RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2669
(166 letters)
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 109 bits (273), Expect = 6e-29
Identities = 64/130 (49%), Positives = 90/130 (69%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
M ++T + YDY+ VS+G+IT+P +DD EE TD A DILGF+ +EK +YK+T +VMH
Sbjct: 253 MLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHY 312
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G +KFKQ+ REEQAEPDGTE D+ + L+G++S +L L PR+ VGNE VT+G V++
Sbjct: 313 GNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRVGVGNEAVTKGETVSE 372
Query: 121 QAFDILGFTK 130
+ K
Sbjct: 373 VHNSVGALAK 382
Score = 52.8 bits (126), Expect = 2e-09
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 83 DRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITAS 142
+ + LL + Y + + I V + + A DILGF+ +EK +YK+T +
Sbjct: 249 ELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGA 308
Query: 143 VMHMGGMKFKQRGREEQAEPDGT 165
VMH G +KFKQ+ REEQAEPDGT
Sbjct: 309 VMHYGNLKFKQKQREEQAEPDGT 331
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 107 bits (268), Expect = 3e-28
Identities = 66/130 (50%), Positives = 95/130 (73%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
+ ++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HM
Sbjct: 251 VMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHM 310
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 311 GEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 370
Query: 121 QAFDILGFTK 130
+ K
Sbjct: 371 VVNSVGALAK 380
Score = 52.4 bits (125), Expect = 3e-09
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 87 KLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHM 146
+L LY+ + + + V N + + +AFDILGFTKEEK++++K TAS++HM
Sbjct: 251 VMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHM 310
Query: 147 GGMKFKQRGREEQAEPDGTE 166
G MKFKQR REEQAE DGT
Sbjct: 311 GEMKFKQRPREEQAESDGTA 330
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 99.0 bits (246), Expect = 2e-25
Identities = 39/128 (30%), Positives = 67/128 (52%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 226 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 285
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
+ FK+ +QA +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 286 IVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQAD 345
Query: 123 FDILGFTK 130
F I K
Sbjct: 346 FAIEALAK 353
Score = 46.7 bits (110), Expect = 3e-07
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA
Sbjct: 257 LEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 303
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 97.5 bits (242), Expect = 9e-25
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
L Y G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+
Sbjct: 248 ALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHL 307
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G +KF++ E D T + S + GV+ L L++PRI G + V Q NV +
Sbjct: 308 GNIKFEKGAGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEK 366
Score = 52.0 bits (124), Expect = 5e-09
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 281 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTA 327
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 94.4 bits (234), Expect = 9e-24
Identities = 30/127 (23%), Positives = 54/127 (42%)
Query: 4 LTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGM 63
L N Y +Y G I G+DD +E T QA +LG + + +++I A ++H+G +
Sbjct: 217 LGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNV 276
Query: 64 KFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAF 123
+F R + A P + L+GVD +++ L ++ E + +
Sbjct: 277 EFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAIN 336
Query: 124 DILGFTK 130
K
Sbjct: 337 ARDALAK 343
Score = 49.8 bits (118), Expect = 3e-08
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 77 DGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENV 136
+ + LG + YT + G + + N +QA +LG + + +
Sbjct: 205 ASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNT-RQACTLLGISDSYQMGI 263
Query: 137 YKITASVMHMGGMKFKQRGREEQAEPDGT 165
++I A ++H+G ++F R + A P
Sbjct: 264 FRILAGILHLGNVEFASRDSDSCAIPPKH 292
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 92.8 bits (230), Expect = 4e-23
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 1 MCMLTNDIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMH 59
LT + Y + + + +DD EF++ +A + LG + ++ ++++I A+++H
Sbjct: 208 ELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILH 267
Query: 60 MGGMKFKQRGREE----QAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGN----EF 111
+G + F + + + T+ + L D Q L L I G
Sbjct: 268 IGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSV 327
Query: 112 VTQGRNVNQQAFDILGFTK 130
++ + NQ A+ K
Sbjct: 328 ISVPMDCNQAAYSRDALAK 346
Score = 48.9 bits (116), Expect = 6e-08
Identities = 8/43 (18%), Positives = 24/43 (55%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEP 162
+A + LG + ++ ++++I A+++H+G + F + +
Sbjct: 242 VKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTT 284
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 24.7 bits (52), Expect = 8.0
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
+ ++ + Y + K+ E L+ + Y + + H
Sbjct: 245 VLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG-----PKNNLKKYNLFSVSNHY 299
Query: 61 GGM 63
GG+
Sbjct: 300 GGL 302
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.374
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,661
Number of extensions: 25747
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 16
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)