BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2671
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 148/472 (31%), Positives = 249/472 (52%), Gaps = 34/472 (7%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
++ GH+ +V V FSP+G+++AS S D TV+ W+ Q + + V + +
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 111
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
T+A + + ++ V + + + Q ++ GH+ +V V FSP+G+++AS
Sbjct: 112 TIA------SASDDKTVKLWNRNGQLLQ---------TLTGHSSSVWGVAFSPDGQTIAS 156
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
S D TV+ W+ Q L GH V +A+SPD + + S + + W+ + Q+
Sbjct: 157 ASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQL 213
Query: 285 GQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTC 344
Q + GH + +++ P + AS+ D +++W+ Q ++ LT H+ SV
Sbjct: 214 LQTLTGHSSSVRGVAFSP-----DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNG 267
Query: 345 IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGG 403
+ + G I SAS D+T+K+W +G + +TL GH+ V +A S D A+
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326
Query: 404 FKYDPANPEE---SSKHALAKYQ-AQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGH 459
K N + + H+ + + A P+G+ + S SDD T+ LWN + + L +TGH
Sbjct: 327 VKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGH 384
Query: 460 QQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVS 519
+ V FSPDG+ IASAS DK++KLW+ R G+ + TL GH +V+ VA+S D + + S
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 520 GSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T+K+WN + ++ Q L GH V V ++PDG+ +AS DK ++LW
Sbjct: 444 ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 146/471 (30%), Positives = 247/471 (52%), Gaps = 34/471 (7%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ H+ +V V FSP+G+++AS S D TV+ W+ Q + ++ V + +T
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 166 LADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASG 225
+A + + ++ V + + + Q ++ GH+ +V V FSP+G+++AS
Sbjct: 72 IA------SASDDKTVKLWNRNGQLLQ---------TLTGHSSSVRGVAFSPDGQTIASA 116
Query: 226 SGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIG 285
S D TV+ W+ Q L GH V +A+SPD + + S + + W+ + Q+
Sbjct: 117 SDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLL 173
Query: 286 QPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCI 345
Q + GH + +++ P + AS+ D +++W+ Q ++ LT H+ SV +
Sbjct: 174 QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGV 227
Query: 346 RWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGF 404
+ G I SAS D+T+K+W +G + +TL GH+ VN +A D A+
Sbjct: 228 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 405 KYDPANP---EESSKHALAKYQ-AQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQ 460
K N + + H+ + + A P+G+ + S SDD T+ LWN + + L +TGH
Sbjct: 287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQHLQTLTGHS 344
Query: 461 QLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSG 520
+ V FSPDG+ IASAS DK++KLW+ R G+ + TL GH +V VA+S D + + S
Sbjct: 345 SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 403
Query: 521 SADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T+K+WN + ++ Q L GH V+ V ++PD + +AS DK ++LW
Sbjct: 404 SDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 146/472 (30%), Positives = 248/472 (52%), Gaps = 34/472 (7%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
++ GH+ +V V FSP+G+++AS S D TV+ W+ Q + ++ V + +
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
T+A + + ++ V + + + Q ++ GH+ +V V FSP+G+++AS
Sbjct: 194 TIA------SASDDKTVKLWNRNGQLLQ---------TLTGHSSSVRGVAFSPDGQTIAS 238
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
S D TV+ W+ Q L GH V +A+ PD + + S + + W+ + Q+
Sbjct: 239 ASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQL 295
Query: 285 GQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTC 344
Q + GH + +++ P + AS+ D +++W+ Q ++ LT H+ SV
Sbjct: 296 LQTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWG 349
Query: 345 IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGG 403
+ + G I SAS D+T+K+W +G + +TL GH+ V +A S D A+
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 404 FKYDPANP---EESSKHALAKYQ-AQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGH 459
K N + + H+ + + A P+ + + S SDD T+ LWN + + L +TGH
Sbjct: 409 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN--RNGQLLQTLTGH 466
Query: 460 QQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVS 519
+ V FSPDG+ IASAS DK++KLW+ R G+ + TL GH +V VA+S D + + S
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525
Query: 520 GSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T+K+WN + ++ Q L GH V+ V ++PDG+ +AS DK ++LW
Sbjct: 526 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 224/431 (51%), Gaps = 33/431 (7%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
++ GH+ +V V FSP+G+++AS S D TV+ W+ Q + + V + +
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
T+A + + ++ V + + + Q ++ GH+ +V V F P+G+++AS
Sbjct: 235 TIA------SASDDKTVKLWNRNGQLLQ---------TLTGHSSSVNGVAFRPDGQTIAS 279
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
S D TV+ W+ Q L GH V +A+SPD + + S + + W+ + G+ +
Sbjct: 280 ASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHL 337
Query: 285 GQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTC 344
Q + GH + +++ P + AS+ D +++W+ Q ++ LT H+ SV
Sbjct: 338 -QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 390
Query: 345 IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGG 403
+ + G I SAS D+T+K+W +G + +TL GH+ V +A S D A+
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 404 FKYDPANPEE----SSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGH 459
K N + + + + A P+G+ + S SDD T+ LWN + + L +TGH
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGH 507
Query: 460 QQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVS 519
+ V FSPDG+ IASAS DK++KLW+ R G+ + TL GH +V+ VA+S D + + S
Sbjct: 508 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Query: 520 GSADSTLKVWN 530
S+D T+K+WN
Sbjct: 567 ASSDKTVKLWN 577
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 179/333 (53%), Gaps = 18/333 (5%)
Query: 244 KCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPF 303
+ E H V +A+SPD + + S + + W+ + Q+ Q + GH + +++ P
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSP- 67
Query: 304 HLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTI 362
+ AS+ D +++W+ Q ++ LT H+ SV + + G I SAS D+T+
Sbjct: 68 ----DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 363 KVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANP---EESSKHAL 419
K+W +G + +TL GH+ V +A S D A+ K N + + H+
Sbjct: 123 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181
Query: 420 AKYQ-AQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASA 478
+ + A P+G+ + S SDD T+ LWN + + L +TGH + V FSPDG+ IASA
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 479 SFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQ 538
S DK++KLW+ R G+ + TL GH +V VA+ D + + S S D T+K+WN + ++ Q
Sbjct: 240 SDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQ 297
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
L GH V+ V ++PDG+ +AS DK ++LW
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 451 KSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAW 510
K R+ H + V FSPDG+ IASAS DK++KLW+ R G+ + TL GH +V+ VA+
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 65
Query: 511 SSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRL 570
S D + + S S D T+K+WN + ++ Q L GH V V ++PDG+ +AS DK ++L
Sbjct: 66 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 571 W 571
W
Sbjct: 125 W 125
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 144
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 205 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 228
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 229 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 288 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
+ S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 182
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 183 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 235
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 236 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 295
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 296 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 88
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 140
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 141 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 255
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 256 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 314 NIIASAALENDKTIKLWKS 332
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 183 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 206
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 207 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA--DSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 75
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 76 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 160
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 161 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 66
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 118
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 119 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 233
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 234 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 292 NIIASAALENDKTIKLWKS 310
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 139
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 200 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 223
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 224 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 283 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 92
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 93 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 177
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 178 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 231 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 291 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 83
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 135
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 136 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 250
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 251 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 309 NIIASAALENDKTIKLWKS 327
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 127
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 188 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 211
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 212 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 80
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 81 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 165
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 166 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 219 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 279 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 71
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 123
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 124 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 238
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 239 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 297 NIIASAALENDKTIKLWKS 315
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 118
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 179 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 202
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 203 ILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA--DSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 71
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 72 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 156
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 157 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 210 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 270 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 62
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 114
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 115 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 229
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 230 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 288 NIIASAALENDKTIKLWKS 306
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 123
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 184 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 207
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 208 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 76
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 77 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 161
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 162 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 215 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 275 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 67
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 119
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 120 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 234
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 235 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 292
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 293 NIIASAALENDKTIKLWKS 311
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 183 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 206
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 207 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA--DSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 75
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 76 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 160
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 161 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 66
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 118
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 119 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 233
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 234 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 292 NIIASAALENDKTIKLWKS 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 189 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 212
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 213 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 79
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
+ S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 166
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 167 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 280 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 72
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 124
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 125 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 239
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 240 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 298 NIIASAALENDKTIKLWKS 316
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 121
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 182 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 205
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 206 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA--DSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 74
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 75 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 159
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 160 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 213 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 273 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 65
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 117
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 118 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 232
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 233 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 290
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 291 NIIASAALENDKTIKLWKS 309
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 189 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 212
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 213 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 81
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 82 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 166
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 167 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 280 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 72
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 124
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 125 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 239
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 240 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 298 NIIASAALENDKTIKLWKS 316
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 153/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 186 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 209
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 210 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 151/338 (44%), Gaps = 49/338 (14%)
Query: 242 LFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWE 301
+F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWS 77
Query: 302 PFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDR 360
S+ D ++IWDV +C++ L H+ V C + S LI S S D
Sbjct: 78 S-----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 361 TIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALA 420
++++W G+ +TL H+ V+ + + D
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD----------------------------- 163
Query: 421 KYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASF 480
G +VS S D +W+ + + ++ V+FSP+G+ I +A+
Sbjct: 164 --------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 481 DKSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIE 537
D ++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 538 QDLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
Q L GH D V + P +AS DK ++LW++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 128/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 121
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ C ++P H++ V +V F+ +G + S S D R
Sbjct: 122 SNLIVSGSFD---ESVRIWDVK-TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 236
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 237 KNEKYCI-FANFSVTGG-KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 295 NIIASAALENDKTIKLWKS 313
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 146
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 207 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 230
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 231 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 290 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 97
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
+ S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 98 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 184
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 185 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 237
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 238 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 297
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 298 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 90
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 142
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 143 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 257
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 258 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 316 NIIASAALENDKTIKLWKS 334
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 189 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 212
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 213 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 79
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
+ S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 166
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 167 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 280 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 408 PANPEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQ 461
P P + K LA + P GE L S S D + +W + K ++GH+
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKL 72
Query: 462 LINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
I+ V +S D ++ SAS DK++K+WD GK + TL+GH V+ ++ S L+VSGS
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D ++++W++KT K + LP H D V AV + DG + S D + R+W
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 124
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 125 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 239
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 240 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 298 NIIASAALENDKTIKLWKS 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LA+ S D ++ W GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 186 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 209
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 210 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L + + +I W + GK + + GHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 78
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 79 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 163
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 164 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++LW++
Sbjct: 277 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLA----------------------------- 126
V+P ++ GH +AV SVKFSPNG LA
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 127 -------------SGSGDTTVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
S S D T++ WDV++ L +G + Y+F N P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 121
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 122 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 236
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 237 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 295 NIIASAALENDKTIKLWKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 152/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 186 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 209
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D L LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 210 ILAATLDNDLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 49/338 (14%)
Query: 242 LFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWE 301
+F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWS 77
Query: 302 PFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDR 360
S+ D ++IWDV +C++ L H+ V C + S LI S S D
Sbjct: 78 S-----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 361 TIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALA 420
++++W G+ +TL H+ V+ + + D
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD----------------------------- 163
Query: 421 KYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASF 480
G +VS S D +W+ + + ++ V+FSP+G+ I +A+
Sbjct: 164 --------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 481 DKSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIE 537
D +KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 538 QDLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
Q L GH D V + P +AS DK ++LW++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 128/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 121
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ C ++P H++ V +V F+ +G + S S D R
Sbjct: 122 SNLIVSGSFD---ESVRIWDVK-TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL-KTYTGH 236
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 237 KNEKYCI-FANFSVTGG-KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK+W++
Sbjct: 295 NIIASAALENDKTIKLWKS 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 186 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 209
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 210 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVW 529
+ + + L+GH V A ++ S + D T+K++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 78
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 79 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 163
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 164 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++L+++
Sbjct: 277 KLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 121
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 122 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 236
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 237 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK++++
Sbjct: 295 NIIASAALENDKTIKLYKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 49/343 (14%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWV 252
V+P ++ GH +AV SVKFSPNG LAS S D ++ W GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 253 LCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
+AWS DS LVS + + WD S+GK + + ++GH ++ ++ P Q
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGV 371
S D ++RIWDV +C++ L +H+ V+ + + G LI S+S D ++W + G
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
+TL D NP S K+ P G+
Sbjct: 186 CLKTL-----------------------------IDDDNPPVS----FVKFS---PNGKY 209
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCV--EFS-PDGRIIASASFDKSIKLWD 488
+++ + D TL LW+ K K L TGH+ C+ FS G+ I S S D + +W+
Sbjct: 210 ILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 489 GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA--DSTLKVW 529
+ + + L+GH V A ++ S + D T+K++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 149/337 (44%), Gaps = 49/337 (14%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
F GH V + +SP+ + L S + +I W + GK + + GHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSS 78
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRT 361
S+ D ++IWDV +C++ L H+ V C + S LI S S D +
Sbjct: 79 -----DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+++W G +TL H+ V+ + + D
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRD------------------------------ 163
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
G +VS S D +W+ + + ++ V+FSP+G+ I +A+ D
Sbjct: 164 -------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWS---SDSRLLVSGSADSTLKVWNMKTKKIEQ 538
++KLWD GK + T GH Y + + + + +VSGS D+ + +WN++TK+I Q
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG--KDKVLRLWQN 573
L GH D V + P +AS DK ++L+++
Sbjct: 277 KLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDT----------------------- 132
V+P ++ GH +AV SVKFSPNG LAS S D
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 133 -------------------TVRFWDVTTQTPLFKCEG-TPYLFYVNETEITKTLADVLPL 172
T++ WDV++ L +G + Y+F N P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----------PQ 121
Query: 173 DTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
L D + ++ V+ +C ++P H++ V +V F+ +G + S S D R
Sbjct: 122 SNLIVSGSFD---ESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 233 FWDVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGH 291
WD + L + V + +SP+ K +++ + + WD S GK + + GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGH 236
Query: 292 KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS- 350
K + + F + + S +D + IW++ + V+ L HT V +
Sbjct: 237 KNEKYCI-FANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 351 GLIYSAS--QDRTIKVWRA 367
+I SA+ D+TIK++++
Sbjct: 295 NIIASAALENDKTIKLFKS 313
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 212/493 (43%), Gaps = 60/493 (12%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ H + V+ FS + +A+ S D V+ WD T + + + VN T
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNK 710
Query: 166 LADVLPLDTLNTEEVVDI--VYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLA 223
++ L L T + + + + + QK+ C ++M GH +V +FSP+ LA
Sbjct: 711 -SNHLLLATGSNDFFLKLWDLNQKE----------CRNTMFGHTNSVNHCRFSPDDELLA 759
Query: 224 SGSGDTTVRFWDVTTQTPLFKCEGHKHW-------------VLCIAWSPDSKQLVSGCKN 270
S S D T+R WDV + + + V C +WS D +++ KN
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPF-HLNHQCRRFASSGKDGAIRIWDVILS 329
V+ +D T + + GH I + P+ HL + + +W++
Sbjct: 820 KVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA------VIALSQYCVELWNIDSR 872
Query: 330 QCVRVLTSHTRSVTCIRWGGSGLIY-SASQDRTIKVW------RASDGVMCRTLEGHAHW 382
V H V + + G + +AS D+TI+VW + S V+ + ++
Sbjct: 873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932
Query: 383 VNTLALSTDYL--MRVEATSTGGFKYDPANPEESSKHALAKYQAQC--PEGEKLVSGSDD 438
T+ L+ D + +++ A TG Y P A+ C P E + G +D
Sbjct: 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPE----------AQVSCCCLSPHLEYVAFGDED 982
Query: 439 FTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL 498
+ + + + GH++ + ++F+ DG+ + S+S D I++W+ + G ++ L
Sbjct: 983 GAIKIIEL-PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FL 1040
Query: 499 RGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEK 558
+ H + V DSRLL S S D T+KVWN+ T +IE+D H V + + D K
Sbjct: 1041 QAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK 1099
Query: 559 VASGGKDKVLRLW 571
+S DK ++W
Sbjct: 1100 FSSTSADKTAKIW 1112
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/505 (21%), Positives = 188/505 (37%), Gaps = 85/505 (16%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNET- 160
C ++M GH +V +FSP+ LAS S D T+R WDV + K F +E
Sbjct: 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSEDP 793
Query: 161 -EITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNG 219
E + + + + ++++ K +F + GH + FSP
Sbjct: 794 PEDVEVIVKCCSW-SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852
Query: 220 RSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSG------------ 267
V W++ ++ + C GH WV + +SPD ++
Sbjct: 853 HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Query: 268 --CKNGVI-----------------HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQ 308
CKN I A D+ G Q+ G ++ L+
Sbjct: 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972
Query: 309 CRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRA 367
A +DGAI+I ++ ++ H ++V I++ G + S+S+D I+VW
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW-- 1030
Query: 368 SDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCP 427
+W TG + + A+ E L
Sbjct: 1031 -------------NW-----------------QTGDYVFLQAHQETVKDFRLL------- 1053
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
+ +L+S S D T+ +WN + T HQ + S D +S S DK+ K+W
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIE-RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 488 DGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK---------IEQ 538
+ + L+GH V A+S D LL +G + +++WN+ + +E+
Sbjct: 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172
Query: 539 DLPGHGDEVYAVDWAPDGEKVASGG 563
HG V V ++PD + + S G
Sbjct: 1173 GTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 40/336 (11%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLV 265
H +AV FS +G+ +AS D T++ + T L + H+ VLC A+S D +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 266 SGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSW--EPFHLNHQCRRFASSGKDGAIRI 323
+ + + WDS+TGK + H + + + + HL A+ D +++
Sbjct: 674 TCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHL-----LLATGSNDFFLKL 727
Query: 324 WDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHW 382
WD+ +C + HT SV R+ L+ S S D T+++W +++
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN----- 782
Query: 383 VNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLF 442
V LS++ DP PE+ + K + +G+K++ + + L
Sbjct: 783 VKRFFLSSE---------------DP--PEDVE--VIVKCCSWSADGDKIIVAAKNKVL- 822
Query: 443 LWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW--DGRIGKFITTLRG 500
L++ TGH I +FSP + A ++LW D R+ + RG
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK--VADCRG 880
Query: 501 HVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
H+ V+ V +S D ++ S D T++VW +TKK+
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKV 914
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 417 HALAKYQAQC--PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI 474
H A Y A C +G+++ S D TL ++ E +K L + H+ + C FS D
Sbjct: 614 HTDAVYHA-CFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSY 671
Query: 475 IASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSR--LLVSGSADSTLKVWNMK 532
IA+ S DK +K+WD GK + T H + V +++ S LL +GS D LK+W++
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 533 TKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
K+ + GH + V ++PD E +AS D LRLW
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 22/284 (7%)
Query: 310 RRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTIKVWRAS 368
+R AS G D ++++ + + + +H V C + I + S D+ +K+W ++
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 369 DGVMCRTLEGHAHWVNTLALS--TDYLMRVEATSTGGFKYDPANPEESSKHALAKYQA-- 424
G + T + H+ VN + +++L+ ++ K N +E +
Sbjct: 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747
Query: 425 QC---PEGEKLVSGSDDFTLFLWN----PEKEKKSLARMTGHQQ--------LINCVEFS 469
C P+ E L S S D TL LW+ E++ ++ R + ++ C +S
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807
Query: 470 PDGRIIASASFDKSIKLWDGRIGKFITTLR-GHVQAVYMVAWSSDSRLLVSGSADSTLKV 528
DG I A+ +K + L+D + + GH + +S L V + +++
Sbjct: 808 ADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 529 WNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
WN+ ++ D GH V+ V ++PDG + D+ +R+W+
Sbjct: 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 40/242 (16%)
Query: 98 PVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV 157
P R SS GH +AV ++F+ +G++L S S D+ ++ W+ T Y+F
Sbjct: 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---------GDYVFLQ 1041
Query: 158 NETEITKTL-----ADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVIS 212
E K + +L T +V +++ R H V+S
Sbjct: 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-----------TGRIERDFTCHQGTVLS 1090
Query: 213 VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGV 272
S + +S S D T + W +PL + +GH V C A+S D L +G NG
Sbjct: 1091 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1150
Query: 273 IHAWDSSTGK--------QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIW 324
I W+ S G+ + + H W+T + + P + S+G G ++ W
Sbjct: 1151 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-----DSKTLVSAG--GYLKWW 1203
Query: 325 DV 326
+V
Sbjct: 1204 NV 1205
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 411 PEESSKHALAKYQAQCPEGEKLVSGSDDFTLFL-WNPEKEKKSLARMT--GHQQLINCVE 467
PE S + AK QA+ EG D L+L W +K K+L+R+ H +
Sbjct: 571 PETSEVYRQAKLQAK-QEG-------DTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHAC 622
Query: 468 FSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLK 527
FS DG+ IAS DK+++++ G+ + ++ H V A+SSD + + SAD +K
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 528 VWNMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASGGKDKVLRLW 571
+W+ T K+ H ++V + +A+G D L+LW
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 212/493 (43%), Gaps = 60/493 (12%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ H + V+ FS + +A+ S D V+ WD T + + + VN T
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNK 717
Query: 166 LADVLPLDTLNTEEVVDI--VYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLA 223
++ L L T + + + + + QK+ C ++M GH +V +FSP+ LA
Sbjct: 718 -SNHLLLATGSNDFFLKLWDLNQKE----------CRNTMFGHTNSVNHCRFSPDDELLA 766
Query: 224 SGSGDTTVRFWDVTTQTPLFKCEGHKHW-------------VLCIAWSPDSKQLVSGCKN 270
S S D T+R WDV + + + V C +WS D +++ KN
Sbjct: 767 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 826
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPF-HLNHQCRRFASSGKDGAIRIWDVILS 329
V+ +D T + + GH I + P+ HL + + +W++
Sbjct: 827 KVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA------VIALSQYCVELWNIDSR 879
Query: 330 QCVRVLTSHTRSVTCIRWGGSGLIY-SASQDRTIKVW------RASDGVMCRTLEGHAHW 382
V H V + + G + +AS D+TI+VW + S V+ + ++
Sbjct: 880 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 939
Query: 383 VNTLALSTDYL--MRVEATSTGGFKYDPANPEESSKHALAKYQAQC--PEGEKLVSGSDD 438
T+ L+ D + +++ A TG Y P A+ C P E + G +D
Sbjct: 940 NETMVLAVDNIRGLQLIAGKTGQIDYLPE----------AQVSCCCLSPHLEYVAFGDED 989
Query: 439 FTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL 498
+ + + + GH++ + ++F+ DG+ + S+S D I++W+ + G ++ L
Sbjct: 990 GAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FL 1047
Query: 499 RGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEK 558
+ H + V DSRLL S S D T+KVWN+ T +IE+D H V + + D K
Sbjct: 1048 QAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK 1106
Query: 559 VASGGKDKVLRLW 571
+S DK ++W
Sbjct: 1107 FSSTSADKTAKIW 1119
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/506 (21%), Positives = 188/506 (37%), Gaps = 85/506 (16%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNET 160
C ++M GH +V +FSP+ LAS S D T+R WDV + K F +E
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 161 --EITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPN 218
E + + + + ++++ K +F + GH + FSP
Sbjct: 800 PPEDVEVIVKCCSW-SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 219 GRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSG----------- 267
V W++ ++ + C GH WV + +SPD ++
Sbjct: 859 DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Query: 268 ---CKNGVI-----------------HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNH 307
CKN I A D+ G Q+ G ++ L+
Sbjct: 919 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 978
Query: 308 QCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWR 366
A +DGAI+I ++ ++ H ++V I++ G + S+S+D I+VW
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW- 1037
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+W TG + + A+ E L
Sbjct: 1038 --------------NW-----------------QTGDYVFLQAHQETVKDFRLL------ 1060
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
+ +L+S S D T+ +WN + T HQ + S D +S S DK+ K+
Sbjct: 1061 -QDSRLLSWSFDGTVKVWNVITGRIE-RDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 487 WDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK---------IE 537
W + + L+GH V A+S D LL +G + +++WN+ + +E
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1178
Query: 538 QDLPGHGDEVYAVDWAPDGEKVASGG 563
+ HG V V ++PD + + S G
Sbjct: 1179 EGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 145/334 (43%), Gaps = 36/334 (10%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLV 265
H +AV FS +G+ +AS D T++ + T L + H+ VLC A+S D +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 266 SGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWD 325
+ + + WDS+TGK + H + + + NH A+ D +++WD
Sbjct: 681 TCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTN-KSNH--LLLATGSNDFFLKLWD 736
Query: 326 VILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVN 384
+ +C + HT SV R+ L+ S S D T+++W +++ V
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN-----VK 791
Query: 385 TLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLW 444
LS++ DP PE+ + K + +G+K++ + + L L+
Sbjct: 792 RFFLSSE---------------DP--PEDVE--VIVKCCSWSADGDKIIVAAKNKVL-LF 831
Query: 445 NPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW--DGRIGKFITTLRGHV 502
+ TGH I +FSP + A ++LW D R+ + RGH+
Sbjct: 832 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK--VADCRGHL 889
Query: 503 QAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
V+ V +S D ++ S D T++VW +TKK+
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKV 921
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 417 HALAKYQAQC--PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI 474
H A Y A C +G+++ S D TL ++ E +K L + H+ + C FS D
Sbjct: 621 HTDAVYHA-CFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSY 678
Query: 475 IASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSR--LLVSGSADSTLKVWNMK 532
IA+ S DK +K+WD GK + T H + V +++ S LL +GS D LK+W++
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 533 TKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
K+ + GH + V ++PD E +AS D LRLW
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 22/284 (7%)
Query: 310 RRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTIKVWRAS 368
+R AS G D ++++ + + + +H V C + I + S D+ +K+W ++
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 369 DGVMCRTLEGHAHWVNTLALS--TDYLMRVEATSTGGFKYDPANPEESSKHALAKYQA-- 424
G + T + H+ VN + +++L+ ++ K N +E +
Sbjct: 695 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 754
Query: 425 QC---PEGEKLVSGSDDFTLFLWN----PEKEKKSLARMTGHQQ--------LINCVEFS 469
C P+ E L S S D TL LW+ E++ ++ R + ++ C +S
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 814
Query: 470 PDGRIIASASFDKSIKLWDGRIGKFITTLR-GHVQAVYMVAWSSDSRLLVSGSADSTLKV 528
DG I A+ +K + L+D + + GH + +S L V + +++
Sbjct: 815 ADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 529 WNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
WN+ ++ D GH V+ V ++PDG + D+ +R+W+
Sbjct: 874 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 40/242 (16%)
Query: 98 PVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV 157
P R SS GH +AV ++F+ +G++L S S D+ ++ W+ T Y+F
Sbjct: 998 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---------GDYVFLQ 1048
Query: 158 NETEITKTL-----ADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVIS 212
E K + +L T +V +++ R H V+S
Sbjct: 1049 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-----------TGRIERDFTCHQGTVLS 1097
Query: 213 VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGV 272
S + +S S D T + W +PL + +GH V C A+S D L +G NG
Sbjct: 1098 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1157
Query: 273 IHAWDSSTGK--------QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIW 324
I W+ S G+ + + H W+T + + P + S+G G ++ W
Sbjct: 1158 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-----DSKTLVSAG--GYLKWW 1210
Query: 325 DV 326
+V
Sbjct: 1211 NV 1212
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 411 PEESSKHALAKYQAQCPEGEKLVSGSDDFTLFL-WNPEKEKKSLARMT--GHQQLINCVE 467
PE S + AK QA+ EG D L+L W +K K+L+R+ H +
Sbjct: 578 PETSEVYRQAKLQAK-QEG-------DTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHAC 629
Query: 468 FSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLK 527
FS DG+ IAS DK+++++ G+ + ++ H V A+SSD + + SAD +K
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 528 VWNMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASGGKDKVLRLW 571
+W+ T K+ H ++V + +A+G D L+LW
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 150/351 (42%), Gaps = 65/351 (18%)
Query: 243 FKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEP 302
+ GH+ V + + P +VS ++ I WD TG + ++GH + +S
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDIS--- 157
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRT 361
+H + AS D I++WD +C+R + H +V+ + +G I SAS+D+T
Sbjct: 158 --FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
IK+W G +T GH WV + + D
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQD------------------------------ 245
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPD---------- 471
G + S S+D T+ +W K+ A + H+ ++ C+ ++P+
Sbjct: 246 -------GTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEAT 297
Query: 472 ----------GRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS 521
G + S S DK+IK+WD G + TL GH V V + S + ++S +
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357
Query: 522 ADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
D TL+VW+ K K+ + L H V ++D+ V +G D+ +++W+
Sbjct: 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 142/332 (42%), Gaps = 25/332 (7%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
++ GH V V F P + S S D T++ WD T +GH V I++
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAI 321
K L S + I WD G + + M GH ++++S P S+ +D I
Sbjct: 163 KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP-----NGDHIVSASRDKTI 216
Query: 322 RIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHA 380
++W+V CV+ T H V +R G LI S S D+T++VW + L H
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 381 HWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFT 440
H V ++ + + + +TG P G L+SGS D T
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKP-----------------GPFLLSGSRDKT 319
Query: 441 LFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRG 500
+ +W+ L + GH + V F G+ I S + DK++++WD + + + TL
Sbjct: 320 IKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 501 HVQAVYMVAWSSDSRLLVSGSADSTLKVWNMK 532
H V + + + +V+GS D T+KVW +
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 42/283 (14%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
++ GH ++V + F +G+ LAS S D T++ WD F+C T + N + ++
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVS- 199
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
++P N + +V K C + GH E V V+ + +G +AS
Sbjct: 200 ----IMP----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQ--------------------L 264
S D TVR W V T+ + H+H V CI+W+P+S L
Sbjct: 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311
Query: 265 VSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA-SSGKDGAIRI 323
+SG ++ I WD STG + + GH W+ + L H +F S D +R+
Sbjct: 312 LSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV------LFHSGGKFILSCADDKTLRV 364
Query: 324 WDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVW 365
WD +C++ L +H VT + + + + + S D+T+KVW
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 118/299 (39%), Gaps = 32/299 (10%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG-TPYLFYVNETEIT 163
++ GH V V F P + S S D T++ WD T +G T + ++
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLA 223
K LA T+ ++ Q C +M GH V SV PNG +
Sbjct: 163 KLLASCSADMTIK-------LWDFQGF-------ECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 224 SGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQ 283
S S D T++ W+V T + GH+ WV + + D + S + + W +T K+
Sbjct: 209 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KE 267
Query: 284 IGQPMRGHKQWITALSWEPFHLNHQCRR---------------FASSGKDGAIRIWDVIL 328
+R H+ + +SW P S +D I++WDV
Sbjct: 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Query: 329 SQCVRVLTSHTRSVTCIRW-GGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTL 386
C+ L H V + + G I S + D+T++VW + +TL H H+V +L
Sbjct: 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 444 WNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQ 503
W P +K ++GH+ + V F P ++ SAS D +IK+WD G F TL+GH
Sbjct: 94 WIPRPPEKYA--LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 151
Query: 504 AVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGG 563
+V +++ +LL S SAD T+K+W+ + + + + GH V +V P+G+ + S
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 564 KDKVLRLWQ 572
+DK +++W+
Sbjct: 212 RDKTIKMWE 220
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 397 EATSTG--GFKYDPAN--PEESSKHALAKYQAQC------PEGEKLVSGSDDFTLFLWNP 446
E TS G G K DP P K+AL+ +++ P +VS S+D T+ +W+
Sbjct: 78 EFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD- 136
Query: 447 EKEKKSLAR-MTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAV 505
E R + GH + + F G+++AS S D +IKLWD + + I T+ GH V
Sbjct: 137 -YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV 195
Query: 506 YMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKD 565
V+ + +VS S D T+K+W ++T + GH + V V DG +AS D
Sbjct: 196 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255
Query: 566 KVLRLW 571
+ +R+W
Sbjct: 256 QTVRVW 261
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQT---------PLFKC-EGT 151
C + GH E V V+ + +G +AS S D TVR W V T+ + +C
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 152 PYLFYVNETEIT--KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT--RCTSSMPGHA 207
P Y + +E T +T P L + + ++ V+ C ++ GH
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFL-------LSGSRDKTIKMWDVSTGMCLMTLVGHD 338
Query: 208 EAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSG 267
V V F G+ + S + D T+R WD + + H+H+V + + + +V+G
Sbjct: 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398
Query: 268 CKNGVIHAWD 277
+ + W+
Sbjct: 399 SVDQTVKVWE 408
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWD 138
RC ++ H V S+ F + +GS D TV+ W+
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 127/277 (45%), Gaps = 36/277 (12%)
Query: 311 RFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS---GLIYSASQDRTIKVWRA 367
R S D +++W + +C+R L HT V W +I S S DRT+KVW A
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 368 SDGVMCRTLEGHAHWVNTLAL--------STDYLMRVEATSTGGFKYDPANPEESSKHAL 419
G TL GH V + L S D +RV TG H L
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG-----------QCLHVL 235
Query: 420 AKYQA--QCPE--GEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ A +C + G ++VSG+ DF + +W+PE E L + GH + ++F DG +
Sbjct: 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHV 292
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S S D SI++WD G I TL GH + + +LVSG+ADST+K+W++KT +
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQ 350
Query: 536 IEQDLPGHGDEVYAVDWAPDGEK-VASGGKDKVLRLW 571
Q L G AV + V + D ++LW
Sbjct: 351 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 160/344 (46%), Gaps = 65/344 (18%)
Query: 203 MPGHAEAVIS-VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
+ GH + VI+ ++F G + SGS D T++ W T L GH V WS
Sbjct: 114 LKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQM 167
Query: 262 KQ--LVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDG 319
+ ++SG + + W++ TG+ I + GH + + HL+ +R S +D
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCM-----HLHE--KRVVSGSRDA 219
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGH 379
+R+WD+ QC+ VL H +V C+++ G ++ S + D +KVW TL+GH
Sbjct: 220 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGH 278
Query: 380 AHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDF 439
+ V +L +G +VSGS D
Sbjct: 279 TNRVYSLQF---------------------------------------DGIHVVSGSLDT 299
Query: 440 TLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLR 499
++ +W+ E + +TGHQ L + +E + I+ S + D ++K+WD + G+ + TL+
Sbjct: 300 SIRVWDVET-GNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQ 356
Query: 500 G---HVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDL 540
G H AV + ++ + +++ S D T+K+W++KT + ++L
Sbjct: 357 GPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Query: 333 RVLTSHTRSV-TCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNT------ 385
+VL H V TC+++ G+ ++ S S D T+KVW A G RTL GH V +
Sbjct: 112 KVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 386 --LALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFL 443
++ STD ++V TG + S+ + ++ +++VSGS D TL +
Sbjct: 171 IIISGSTDRTLKVWNAETGECIH-TLYGHTSTVRCMHLHE------KRVVSGSRDATLRV 223
Query: 444 WNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQ 503
W+ E + L + GH + CV++ DGR + S ++D +K+WD + TL+GH
Sbjct: 224 WDIET-GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 504 AVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGG 563
VY + + D +VSGS D++++VW+++T L GH ++ + + SG
Sbjct: 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGN 336
Query: 564 KDKVLRLW 571
D +++W
Sbjct: 337 ADSTVKIW 344
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 39/282 (13%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG---TPYLFYV 157
+C ++ GH V S + N + SGS D T++ W+ T + G T ++
Sbjct: 150 KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 158 NETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSP 217
+E + D T V DI +C + GH AV V++
Sbjct: 208 HEKRVVSGSRDA-------TLRVWDI-----------ETGQCLHVLMGHVAAVRCVQY-- 247
Query: 218 NGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
+GR + SG+ D V+ WD T+T L +GH + V + + D +VSG + I WD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Query: 278 SSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVL-- 335
TG I + GH+ + + + L S D ++IWD+ QC++ L
Sbjct: 306 VETGNCI-HTLTGHQSLTSGMELKDNIL-------VSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 336 -TSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTL 376
H +VTC+++ + ++S D T+K+W G R L
Sbjct: 358 PNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 130/566 (22%), Positives = 229/566 (40%), Gaps = 87/566 (15%)
Query: 51 DEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS------ 104
D G YL ++N+ IT L L D VY + + C +
Sbjct: 595 DNGMLYLEWINKKNITN-------LSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQV 647
Query: 105 ----------SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYL 154
+ H + V+ FS + R +A+ S D V+ W+ T + + +
Sbjct: 648 FKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD--EHS 705
Query: 155 FYVNETEITKTLADVLPLDTLNTEEVVDI--VYQKQAVFQVRPVTRCTSSMPGHAEAVIS 212
VN T + +L L T +++ + + + QK+ C ++M GH +V
Sbjct: 706 EQVNCCHFTNSSHHLL-LATGSSDCFLKLWDLNQKE----------CRNTMFGHTNSVNH 754
Query: 213 VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVL--------------CIAWS 258
+FSP+ + LAS S D T++ WD T+ K K + L C +WS
Sbjct: 755 CRFSPDDKLLASCSADGTLKLWDATSANER-KSINVKQFFLNLEDPQEDMEVIVKCCSWS 813
Query: 259 PDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKD 318
D +++ KN + +D T +G+ GH I + P Q +
Sbjct: 814 ADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSP-----QNHLAVVALSQ 867
Query: 319 GAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIY-SASQDRTIKVWRA-----SDGVM 372
+ +W+ V H V + + G + ++S D+TI++W + VM
Sbjct: 868 YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVM 927
Query: 373 CRTLEGHAHWVN-TLALSTDYLMRVEATS--TGGFKYDPANPEESSKHALAKYQAQC--- 426
+ N + L+ D++ R++ + TG Y L + Q C
Sbjct: 928 LKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDY------------LTEAQVSCCCL 975
Query: 427 -PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIK 485
P + + G ++ + + + +R H++ + ++F+ D + + S+S D I+
Sbjct: 976 SPHLQYIAFGDENGAIEILELVNNRIFQSRFQ-HKKTVWHIQFTADEKTLISSSDDAEIQ 1034
Query: 486 LWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGD 545
+W+ ++ K I LRGH + V +SRLL S S D T+KVWN+ T E+D H
Sbjct: 1035 VWNWQLDKCIF-LRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQG 1092
Query: 546 EVYAVDWAPDGEKVASGGKDKVLRLW 571
V + D + D K +S DK ++W
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 109/508 (21%), Positives = 190/508 (37%), Gaps = 90/508 (17%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNET 160
C ++M GH +V +FSP+ + LAS S D T++ WD T+ + F++N
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE--RKSINVKQFFLNLE 797
Query: 161 EITKTLADVLPLDTLNTEEVVDIVYQKQAVF--QVRPVTRCTSSMPGHAEAVISVKFSPN 218
+ + + ++ + + + +V K +F + GH + FSP
Sbjct: 798 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ 857
Query: 219 GRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSG----------- 267
V W+ +++ + C GH WV + +SPD ++
Sbjct: 858 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
Query: 268 ---CKNGVIH-----------------AWDSSTGKQIGQPMRGHKQWITALSWEPFHLNH 307
CKN + A D Q+ G ++T L+
Sbjct: 918 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP 977
Query: 308 QCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-GGSGLIYSASQDRTIKVWR 366
+ A ++GAI I +++ ++ + H ++V I++ + S+S D I+VW
Sbjct: 978 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
C L GH V L
Sbjct: 1038 WQLD-KCIFLRGHQETVKDFRL-------------------------------------- 1058
Query: 427 PEGEKLVSGSDDFTLFLWN---PEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKS 483
+ +L+S S D T+ +WN KEK HQ + + S D +S S DK+
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNIITGNKEKD----FVCHQGTVLSCDISHDATKFSSTSADKT 1114
Query: 484 IKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKI------- 536
K+W + + LRGH V A+S DS LL +G + +++WN+ ++
Sbjct: 1115 AKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPL 1174
Query: 537 -EQDLPGHGDEVYAVDWAPDGEKVASGG 563
E+ HG V + ++PDG+ + S G
Sbjct: 1175 SEEGAATHGGWVTDLCFSPDGKMLISAG 1202
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 125/287 (43%), Gaps = 28/287 (9%)
Query: 310 RRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRAS 368
+R AS G D ++++ + + + +H V C + I + S D+ +K+W +
Sbjct: 634 QRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSM 693
Query: 369 DGVMCRTLEGHAHWVNTLAL--STDYLMRVEATSTGGFKYDPANPEESSKHALAKYQA-- 424
G + T + H+ VN S+ +L+ +S K N +E +
Sbjct: 694 TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVN 753
Query: 425 QC---PEGEKLVSGSDDFTLFLWNP--EKEKKSL------ARMTGHQQ----LINCVEFS 469
C P+ + L S S D TL LW+ E+KS+ + Q+ ++ C +S
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWS 813
Query: 470 PDGRIIASASFDKSIKLWD----GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADST 525
DG I A+ +K I L+D G +G+ T GH + +S + L V +
Sbjct: 814 ADGARIMVAAKNK-IFLFDIHTSGLLGEIHT---GHHSTIQYCDFSPQNHLAVVALSQYC 869
Query: 526 LKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
+++WN ++ D GH V+ V ++PDG + D+ +RLW+
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 411 PEESSKHALAKYQAQCPEGEKLVSGSDDFTLFL-WNPEKEKKSLARMT--GHQQLINCVE 467
PE S + AK QA+ D+ L+L W +K +L+R+ H +
Sbjct: 577 PETSEVYQQAKLQAK--------QEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHAC 628
Query: 468 FSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLK 527
FS DG+ IAS DK+++++ G+ + ++ H V A+S+D R + + S D +K
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 528 VWNMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASGGKDKVLRLW 571
+WN T ++ H ++V + +A+G D L+LW
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 136/337 (40%), Gaps = 58/337 (17%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWD---VTTQTPLFKCEGTPYLFYVNETEITK 164
GH V V FSP+G S + S D T+R W+ V + + + +F NE
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVM--- 942
Query: 165 TLADVLPLDTLNTEEVVD-----IVYQKQAVFQVRPVT---------------------- 197
VL +D + ++++ I Y +A ++
Sbjct: 943 ----VLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVN 998
Query: 198 -RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIA 256
R S H + V ++F+ + ++L S S D ++ W+ +F GH+ V
Sbjct: 999 NRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFR 1057
Query: 257 WSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG 316
+S+ L+S +G + W+ TG + + H+ T LS + ++H +F+S+
Sbjct: 1058 LLKNSR-LLSWSFDGTVKVWNIITGNK-EKDFVCHQG--TVLSCD---ISHDATKFSSTS 1110
Query: 317 KDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRTIKVWRASDGV---M 372
D +IW L + L H V C + S L+ + + I++W S+G +
Sbjct: 1111 ADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Query: 373 CRTL--EG---HAHWVNTLALSTDYLMRVEATSTGGF 404
C L EG H WV L S D M + S GG+
Sbjct: 1171 CAPLSEEGAATHGGWVTDLCFSPDGKMLI---SAGGY 1204
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 100 TRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNE 159
R S H + V ++F+ + ++L S S D ++ W+ L KC +F
Sbjct: 999 NRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN----WQLDKC-----IFLRGH 1049
Query: 160 TEITKTL-----ADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVK 214
E K + +L T +V +I+ + H V+S
Sbjct: 1050 QETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKE-----------KDFVCHQGTVLSCD 1098
Query: 215 FSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIH 274
S + +S S D T + W PL + GH V C A+S DS L +G NG I
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 275 AWDSSTGK--QIGQPMR-----GHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVI 327
W+ S G+ + P+ H W+T L + P + S+G G I+ W+V+
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP-----DGKMLISAG--GYIKWWNVV 1211
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 497 TLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDG 556
+R H AVY +S D + + S AD TL+V+ +T + ++ H DEV ++ D
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 557 EKVASGGKDKVLRLWQN 573
+A+ DK +++W +
Sbjct: 676 RFIATCSVDKKVKIWNS 692
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 34/190 (17%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTT--QTPLFKCEGTPYL---FYVNET 160
+ GH E V + N R L S S D TV+ W++ T + F C L + T
Sbjct: 1046 LRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 161 EITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+ + T AD K A + + GH V FS +
Sbjct: 1105 KFSSTSAD------------------KTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1146
Query: 221 SLASGSGDTTVRFWDVTTQTPLFKC-----EG---HKHWVLCIAWSPDSKQLVSGCKNGV 272
LA+G + +R W+V+ L C EG H WV + +SPD K L+S G
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA--GGY 1204
Query: 273 IHAWDSSTGK 282
I W+ TG+
Sbjct: 1205 IKWWNVVTGE 1214
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 48/271 (17%)
Query: 303 FHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTI 362
+ L + ++ S +D I+IWD +C R+LT HT SV C+++ +I + S D T+
Sbjct: 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTV 195
Query: 363 KVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKY 422
+VW + G M TL H V L +
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGM------------------------------ 225
Query: 423 QAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLAR--MTGHQQLINCVEFSPDGRIIASASF 480
+V+ S D ++ +W+ R + GH+ +N V+F D + I SAS
Sbjct: 226 ---------MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274
Query: 481 DKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDL 540
D++IK+W+ +F+ TL GH + + + + RL+VSGS+D+T+++W+++ + L
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 541 PGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
GH + V + + D +++ SG D +++W
Sbjct: 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 43/310 (13%)
Query: 252 VLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRR 311
V C+ + D +++VSG ++ I WD +T + + + GH + L ++ R
Sbjct: 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQYDE-------RV 185
Query: 312 FASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVW---RAS 368
+ D +R+WDV + + L H +V +R+ +G++ + S+DR+I VW +
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIAVWDMASPT 244
Query: 369 DGVMCRTLEGHAHWVNTLALSTDYL--------MRVEATSTGGFKYDPANPEESSKHALA 420
D + R L GH VN + Y+ ++V TST F K +A
Sbjct: 245 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIA 300
Query: 421 KYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASF 480
Q + +VSGS D T+ LW+ E L + GH++L+ C+ F D + I S ++
Sbjct: 301 CLQYR---DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRF--DNKRIVSGAY 354
Query: 481 DKSIKLWD--------GRIGKF-ITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
D IK+WD G + TL H V+ + + D +VS S D T+ +W+
Sbjct: 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412
Query: 532 KTKKIEQDLP 541
Q P
Sbjct: 413 LNDPAAQAEP 422
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 121/291 (41%), Gaps = 82/291 (28%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETE 161
C + GH +V+ +++ + R + +GS D+TVR WDV
Sbjct: 165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV---------------------- 200
Query: 162 ITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRS 221
NT E+++ ++ H EAV+ ++F N
Sbjct: 201 --------------NTGEMLN-------------------TLIHHCEAVLHLRF--NNGM 225
Query: 222 LASGSGDTTVRFWDVTTQTPLFKCE---GHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDS 278
+ + S D ++ WD+ + T + GH+ V + + D K +VS + I W++
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT 283
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
ST + + + + GHK+ I L + R S D IR+WD+ C+RVL H
Sbjct: 284 STCEFV-RTLNGHKRGIACLQYRD-------RLVVSGSSDNTIRLWDIECGACLRVLEGH 335
Query: 339 TRSVTCIRWGGSGLIYSASQDRTIKVW--------RASDGVMC-RTLEGHA 380
V CIR+ ++ S + D IKVW RA G +C RTL H+
Sbjct: 336 EELVRCIRFDNKRIV-SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 385
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA 522
+ C+++ D + I S D +IK+WD + L GH +V + + D R++++GS+
Sbjct: 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS 191
Query: 523 DSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
DST++VW++ T ++ L H + V + + + + + KD+ + +W
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVW 238
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 117/250 (46%), Gaps = 52/250 (20%)
Query: 335 LTSHTRSVTCIR--WGGSGLIYSASQDRTIKVWRASD-----GVMCRTLEGHAHWVNTLA 387
+ +HT VT I + +I SAS+D++I +W+ + GV R L GH+H+V +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 388 LSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPE 447
LS+D G+ +SGS D L LW+
Sbjct: 438 LSSD-------------------------------------GQFALSGSWDGELRLWD-L 459
Query: 448 KEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL----RGHVQ 503
S R GH + + V FS D R I SAS D++IKLW+ +G+ T+ GH
Sbjct: 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRD 518
Query: 504 AVYMVAWSSDSR--LLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVAS 561
V V +S ++ +VS S D T+KVWN+ K+ L GH V V +PDG AS
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 562 GGKDKVLRLW 571
GGKD V+ LW
Sbjct: 579 GGKDGVVLLW 588
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 81/363 (22%)
Query: 202 SMPGHAEAVISVKFSP--NGRSLASGSGDTTVRFWDVTTQTPLF-----KCEGHKHWVLC 254
+M H + V ++ +P N + S S D ++ W +T + + GH H+V
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 255 IAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFAS 314
+ S D + +SG +G + WD + G + GH + + +++ F L++ R+ S
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVST-RRFVGHTKDVLSVA---FSLDN--RQIVS 489
Query: 315 SGKDGAIRIWDVILSQCVRVLT----SHTRSVTCIRWGGSGL---IYSASQDRTIKVWRA 367
+ +D I++W+ L +C ++ H V+C+R+ + L I SAS D+T+KVW
Sbjct: 490 ASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 368 SDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCP 427
S+ + TL GH +V+T+A+S P
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVS-------------------------------------P 571
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
+G SG D + LW+ + KK + +I+ + FSP+ R A+ + IK+W
Sbjct: 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPN-RYWLCAATEHGIKIW 628
Query: 488 DGRIGKFITTLRGHVQA-----------------VYMVA--WSSDSRLLVSGSADSTLKV 528
D + L+ ++A +Y + WS+D L SG D ++V
Sbjct: 629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
Query: 529 WNM 531
W +
Sbjct: 689 WGI 691
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 50/287 (17%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ GH+ V V S +G+ SGS D +R WD+ G +V T+
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--------GVSTRRFVGHTK---- 473
Query: 166 LADVLPLD-TLNTEEVVDIVYQKQAVFQVRPVTRCTSSMP----GHAEAVISVKFSPNGR 220
DVL + +L+ ++V + + + + C ++ GH + V V+FSPN
Sbjct: 474 --DVLSVAFSLDNRQIVS-ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530
Query: 221 --SLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDS 278
++ S S D TV+ W+++ GH +V +A SPD SG K+GV+ WD
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ GK++ + + I AL + P R + + + I+IWD+ V L
Sbjct: 591 AEGKKL-YSLEANSV-IHALCFSP------NRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Query: 339 TRS-------------------VTCIRWGGSG-LIYSASQDRTIKVW 365
++ T + W G ++S D I+VW
Sbjct: 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 103 TSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTP-YLFYVNETE 161
T GH + V+SV FS + R + S S D T++ W+ + EG + +V+
Sbjct: 465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR 524
Query: 162 ITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCT--SSMPGHAEAVISVKFSPNG 219
+ NT + + +V ++ C S++ GH V +V SP+G
Sbjct: 525 FSP-----------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 220 RSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
ASG D V WD+ L+ E + + + +SP+ L + ++G I WD
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCAATEHG-IKIWD 629
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 32/154 (20%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTP-------- 152
+ S++ GH V +V SP+G ASG D V WD+ L+ E
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Query: 153 ----YLFYVNETEI------TKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSS 202
+L E I +K++ + L +D E D R V CT
Sbjct: 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKAD---NSGPAATKRKVIYCT-- 666
Query: 203 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDV 236
S+ +S +G +L SG D +R W +
Sbjct: 667 ---------SLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 33/245 (13%)
Query: 338 HTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVE 397
HT V C+++ G + ++T +V+R SDG + L
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARL--------------------- 101
Query: 398 ATSTGGFKYDPANPEESSKHALAKY-QAQC--PEGEKLVSGSDDFTLFLWNPEKEKKSLA 454
+ DP N SS + Y ++ C P+G+ L +G++D + +W+ E +K +
Sbjct: 102 -SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVM 159
Query: 455 RMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDS 514
+ GH+Q I +++ P G + S S D+++++WD R G+ TL + D
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219
Query: 515 RLLVSGSADSTLKVWNMKTKKIEQDL-------PGHGDEVYAVDWAPDGEKVASGGKDKV 567
+ + +GS D ++VW+ +T + + L GH D VY+V + DG+ V SG D+
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 568 LRLWQ 572
++LW
Sbjct: 280 VKLWN 284
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 142/367 (38%), Gaps = 75/367 (20%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTT-----------VRFWD--VTTQTP----LFKCEGH 248
H V VKFS +G LA+G TT R D + P
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 249 KHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQ 308
++ + +SPD K L +G ++ +I WD ++I ++GH+Q I +L + P
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFP-----S 176
Query: 309 CRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRA 367
+ S D +RIWD+ QC L+ T G G I + S DR ++VW +
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 368 SDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQ-C 426
G + L+ + E + H + Y
Sbjct: 237 ETGFLVERLD-------------------------------SENESGTGHKDSVYSVVFT 265
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMT-----------GHQQLINCVEFSPDGRII 475
+G+ +VSGS D ++ LWN + T GH+ + V + + I
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 325
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRL------LVSGSADSTLKVW 529
S S D+ + WD + G + L+GH +V VA ++ S L +GS D ++W
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Query: 530 NMKTKKI 536
K KKI
Sbjct: 386 --KYKKI 390
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 139/350 (39%), Gaps = 89/350 (25%)
Query: 242 LFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWE 301
L K H V C+ +S D + L +GC N + S G + + +A + +
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD-----SAANKD 110
Query: 302 PFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRT 361
P +LN SS + I V S + L + ++DR
Sbjct: 111 PENLN------TSSSPSSDLYIRSVCFSPDGKFLAT------------------GAEDRL 146
Query: 362 IKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
I++W + + L+GH + +L DY
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSL----DYF---------------------------- 174
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP-DGRIIASASF 480
P G+KLVSGS D T+ +W+ + SL + + V SP DG+ IA+ S
Sbjct: 175 -----PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAAGSL 227
Query: 481 DKSIKLWDGRIGKFITTL-------RGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
D+++++WD G + L GH +VY V ++ D + +VSGS D ++K+WN++
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 534 KKIEQD------------LPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
+ D GH D V +V + E + SG KD+ + W
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 28/236 (11%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ GH + + S+ + P+G L SGSGD TVR WD+ T +C T + E T
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG----QCSLTLSI------EDGVT 210
Query: 166 LADVLPLD----TLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRS 221
V P D + + V+ + F V + S GH ++V SV F+ +G+S
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 222 LASGSGDTTVRFWDVT-------TQTP-LFKCE----GHKHWVLCIAWSPDSKQLVSGCK 269
+ SGS D +V+ W++ ++TP CE GHK +VL +A + + + ++SG K
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 270 NGVIHAWDSSTGKQIGQPMRGHKQWITALS-WEPFHLNHQCRRFASSGKDGAIRIW 324
+ + WD +G + ++GH+ + +++ L + FA+ D RIW
Sbjct: 331 DRGVLFWDKKSGNPLLM-LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/396 (21%), Positives = 148/396 (37%), Gaps = 90/396 (22%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLAD 168
H V VKFS +G LA+G C T ++ V++ + L+D
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-------------------CNKTTQVYRVSDGSLVARLSD 103
Query: 169 VLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGD 228
+ P TSS P + SV FSP+G+ LA+G+ D
Sbjct: 104 -------------------DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144
Query: 229 TTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPM 288
+R WD+ + + +GH+ + + + P +LVSG + + WD TG+
Sbjct: 145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--CSLT 202
Query: 289 RGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVL-------TSHTRS 341
+ +T ++ P + A+ D A+R+WD V L T H S
Sbjct: 203 LSIEDGVTTVAVSP----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 342 VTCIRWGGSGL-IYSASQDRTIKVW---RASDGVMCRTLEGHAHWVNTLALSTDYLMRVE 397
V + + G + S S DR++K+W A++ +T V + D+++ V
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVA 317
Query: 398 ATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMT 457
T E ++SGS D + W+ +K L +
Sbjct: 318 TTQN---------------------------DEYILSGSKDRGVLFWD-KKSGNPLLMLQ 349
Query: 458 GHQQLI------NCVEFSPDGRIIASASFDKSIKLW 487
GH+ + N P+ + A+ S D ++W
Sbjct: 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 22/151 (14%)
Query: 442 FLWNPEKEKK---SLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL 498
L+NP ++ L + H ++ CV+FS DG +A+ +K+ +++ G + L
Sbjct: 43 ILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL 101
Query: 499 RGHVQA------------------VYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDL 540
A + V +S D + L +G+ D +++W+++ +KI L
Sbjct: 102 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 161
Query: 541 PGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
GH ++Y++D+ P G+K+ SG D+ +R+W
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 45/171 (26%)
Query: 87 VYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLF 146
V+ + F V + S GH ++V SV F+ +G+S+ SGS D +V+ W++
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN----- 287
Query: 147 KCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT-RCTSSMPG 205
N +KT P + C + G
Sbjct: 288 ----------ANNKSDSKT-----------------------------PNSGTCEVTYIG 308
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIA 256
H + V+SV + N + SGS D V FWD + PL +GH++ V+ +A
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 288 MRGHK-QWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIR 346
+RGH IT L +E ++ + D IR++D I + + L+ H V ++
Sbjct: 117 LRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK 169
Query: 347 WGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKY 406
+ G++ S S DRT++VW G EGH V L + KY
Sbjct: 170 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL----------DIVEYKNIKY 219
Query: 407 DPANPEESSKHA--LAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLIN 464
+++ H L K + GE+ D+ L PE+ + + GH +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEE-----HDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 465 CVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADS 524
V S G I+ S S+D ++ +WD K + L GH +Y + + + +S S D+
Sbjct: 275 TV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 525 TLKVWNMKTKKIEQDLPGH 543
T+++W+++ ++ L GH
Sbjct: 333 TIRIWDLENGELXYTLQGH 351
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 203 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLC--IAWSPD 260
+ GH V ++K++ +G L SGS D TVR WD+ EGH V C I +
Sbjct: 158 LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 261 SKQLVSGCKNGVIHAW----DSST---GKQIGQPM---------------RGHKQWITAL 298
K +V+G ++ +H W +SS G++ P+ RGH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 299 SWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHT-RSVTCIRWGGSGLIYSAS 357
S S D + +WDV +C+ +L+ HT R + I SAS
Sbjct: 277 S-------GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEAT-STGGFKYDPANPEESSK 416
D TI++W +G + TL+GH V L LS +L+ A S G+ + + + S
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 417 HA-LAKYQAQCPEGEKLVSGSDD-FTLF 442
H L+ LVSGS++ F ++
Sbjct: 390 HTNLSAITTFYVSDNILVSGSENQFNIY 417
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 35/227 (15%)
Query: 375 TLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPE---ESSKHALAKYQAQCPEGEK 431
TL GH V T D + A YD N + + S H + + G
Sbjct: 116 TLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI--IASASFDKSIKLWDG 489
LVSGS D T+ +W+ +K + GH + C++ I I + S D ++ +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW-- 232
Query: 490 RIGK-------------------------FITTLRGHVQAVYMVAWSSDSRLLVSGSADS 524
++ K F+ LRGH +V V S ++VSGS D+
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDN 290
Query: 525 TLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
TL VW++ K L GH D +Y+ + + ++ S D +R+W
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 439 FTLFLWNPEKEKKSLARMTGHQ-QLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITT 497
F L W K + GH +I C++F D +I A DK I+++D KF+
Sbjct: 100 FILKNWYNPKFVPQRTTLRGHXTSVITCLQF-EDNYVITGAD-DKXIRVYDSINKKFLLQ 157
Query: 498 LRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWA--PD 555
L GH V+ + ++ +LVSGS D T++VW++K GH V +D +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 556 GEKVASGGKDKVLRLWQ 572
+ + +G +D L +W+
Sbjct: 217 IKYIVTGSRDNTLHVWK 233
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 25/252 (9%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ GH V ++K++ +G L SGS D TVR WD+ EG + K
Sbjct: 158 LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 166 LADVLPLDTLNTEEVVDIVYQKQA-----------VFQV-RPVTRCTSSMPGHAEAVISV 213
+ ++ NT V + + VF + GH +V +V
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVI 273
S +G + SGS D T+ WDV L+ GH + + + K+ +S + I
Sbjct: 277 --SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 274 HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVR 333
WD G ++ ++GH + L + S+ DG+IR WD + R
Sbjct: 335 RIWDLENG-ELXYTLQGHTALVGLLRLSD-------KFLVSAAADGSIRGWDA--NDYSR 384
Query: 334 VLTSHTRSVTCI 345
+ H +++ I
Sbjct: 385 KFSYHHTNLSAI 396
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 12/188 (6%)
Query: 102 CTSSMPGHAEAV--ISVKFSPNGRSLASGSGDTTVRFWDVTTQTPL-FKCEGTPYLFYVN 158
CT GH V + + N + + +GS D T+ W + ++ + E Y +
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 159 ETEITKTLADVLPLDTLNTEEV-------VDIVYQKQAVFQVRPVTRCTSSMPGHAEAVI 211
E VL + V V Y + +C + GH + +
Sbjct: 255 TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIY 314
Query: 212 SVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNG 271
S + + S S DTT+R WD+ + +GH V + S K LVS +G
Sbjct: 315 STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADG 372
Query: 272 VIHAWDSS 279
I WD++
Sbjct: 373 SIRGWDAN 380
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG 150
+C + GH + + S + + S S DTT+R WD+ + +G
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQG 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 137/337 (40%), Gaps = 58/337 (17%)
Query: 246 EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI-GQPMRGHKQWITALSWEPFH 304
GH + + W DS+ LVS ++G + WDS T ++ P+R W+ ++ P
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR--SSWVMTCAYAPSG 109
Query: 305 -------LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSAS 357
L++ C + ++G +R+ R L HT ++C R+ I ++S
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRV--------SRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKH 417
D T +W G T GH V +L+L+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---------------------------- 193
Query: 418 ALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
P+ VSG+ D + LW+ +E TGH+ IN + F P+G A+
Sbjct: 194 ---------PDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 478 ASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S D + +L+D R + + T + + V++S RLL++G D VW+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 536 IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH + V + DG VA+G D L++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 15/209 (7%)
Query: 374 RTLEGHAHWVNTLALSTDYLMRVEATSTGGF----KYDP----ANPEESSKHALAKYQAQ 425
RTL GH + + TD + V A+ G Y A P SS Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-- 106
Query: 426 CPEGEKLVSGSDDFTLFLWNPEKEKKSLA---RMTGHQQLINCVEFSPDGRIIASASFDK 482
P G + G D ++N + + ++ + GH ++C F D +I+ S S D
Sbjct: 107 -PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 483 SIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPG 542
+ LWD G+ TT GH V ++ + D+RL VSG+ D++ K+W+++ Q G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 543 HGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
H ++ A+ + P+G A+G D RL+
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 118/310 (38%), Gaps = 43/310 (13%)
Query: 97 RPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQT-----PL-----F 146
R R ++ GH + ++ + + R L S S D + WD T PL
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 147 KCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGH 206
C P YV L ++ + L T E R + + GH
Sbjct: 102 TCAYAPSGNYV----ACGGLDNICSIYNLKTRE---------------GNVRVSRELAGH 142
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS 266
+ +F + + + + SGDTT WD+ T GH V+ ++ +PD++ VS
Sbjct: 143 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 267 GCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
G + WD G Q GH+ I A+ + P FA+ D R++D+
Sbjct: 202 GACDASAKLWDVREG-MCRQTFTGHESDINAICFFP-----NGNAFATGSDDATCRLFDL 255
Query: 327 ILSQCVRVLTSHTRSVTC----IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAH 381
Q ++T ++ C + + SG L+ + D VW A L GH +
Sbjct: 256 RADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 382 WVNTLALSTD 391
V+ L ++ D
Sbjct: 314 RVSCLGVTDD 323
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETE 161
C + GH + ++ F PNG + A+GS D T R +D+ L + +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 162 ITKTLADVLP-LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+K+ +L D N V D + +A + GH V + + +G
Sbjct: 278 FSKSGRLLLAGYDDFNC-NVWDALKADRA-----------GVLAGHDNRVSCLGVTDDGM 325
Query: 221 SLASGSGDTTVRFWD 235
++A+GS D+ ++ W+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLAD 168
H V+S+ +P+ R SG+ D + + WDV C T F +E++I
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQT---FTGHESDINAIC-- 233
Query: 169 VLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC-TSSMPGHAEAVISVKFSPNGRSLASGSG 227
P D + +F +R T S + SV FS +GR L +G
Sbjct: 234 FFPNGNAFATGSDDATCR---LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 228 DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
D WD GH + V C+ + D + +G + + W+
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 531 MKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
M+T++ L GH ++YA+ W D + S +D L +W
Sbjct: 45 MRTRRT---LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 82
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 137/337 (40%), Gaps = 58/337 (17%)
Query: 246 EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI-GQPMRGHKQWITALSWEPFH 304
GH + + W DS+ LVS ++G + WDS T ++ P+R W+ ++ P
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR--SSWVMTCAYAPSG 109
Query: 305 -------LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSAS 357
L++ C + ++G +R+ R L HT ++C R+ I ++S
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRV--------SRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKH 417
D T +W G T GH V +L+L+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---------------------------- 193
Query: 418 ALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
P+ VSG+ D + LW+ +E TGH+ IN + F P+G A+
Sbjct: 194 ---------PDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 478 ASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S D + +L+D R + + T + + V++S RLL++G D VW+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 536 IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH + V + DG VA+G D L++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 15/209 (7%)
Query: 374 RTLEGHAHWVNTLALSTDYLMRVEATSTGGF----KYDP----ANPEESSKHALAKYQAQ 425
RTL GH + + TD + V A+ G Y A P SS Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-- 106
Query: 426 CPEGEKLVSGSDDFTLFLWNPEKEKKSLA---RMTGHQQLINCVEFSPDGRIIASASFDK 482
P G + G D ++N + + ++ + GH ++C F D +I+ S S D
Sbjct: 107 -PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 483 SIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPG 542
+ LWD G+ TT GH V ++ + D+RL VSG+ D++ K+W+++ Q G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 543 HGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
H ++ A+ + P+G A+G D RL+
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 118/310 (38%), Gaps = 43/310 (13%)
Query: 97 RPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQT-----PL-----F 146
R R ++ GH + ++ + + R L S S D + WD T PL
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 147 KCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGH 206
C P YV L ++ + L T E R + + GH
Sbjct: 102 TCAYAPSGNYV----ACGGLDNICSIYNLKTRE---------------GNVRVSRELAGH 142
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS 266
+ +F + + + + SGDTT WD+ T GH V+ ++ +PD++ VS
Sbjct: 143 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 267 GCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
G + WD G Q GH+ I A+ + P FA+ D R++D+
Sbjct: 202 GACDASAKLWDVREG-MCRQTFTGHESDINAICFFP-----NGNAFATGSDDATCRLFDL 255
Query: 327 ILSQCVRVLTSHTRSVTC----IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAH 381
Q ++T ++ C + + SG L+ + D VW A L GH +
Sbjct: 256 RADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 382 WVNTLALSTD 391
V+ L ++ D
Sbjct: 314 RVSCLGVTDD 323
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETE 161
C + GH + ++ F PNG + A+GS D T R +D+ L + +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 162 ITKTLADVLP-LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+K+ +L D N V D + +A + GH V + + +G
Sbjct: 278 FSKSGRLLLAGYDDFNC-NVWDALKADRA-----------GVLAGHDNRVSCLGVTDDGM 325
Query: 221 SLASGSGDTTVRFWD 235
++A+GS D+ ++ W+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLAD 168
H V+S+ +P+ R SG+ D + + WDV C T F +E++I
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQT---FTGHESDINAIC-- 233
Query: 169 VLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC-TSSMPGHAEAVISVKFSPNGRSLASGSG 227
P D + +F +R T S + SV FS +GR L +G
Sbjct: 234 FFPNGNAFATGSDDATCR---LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 228 DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
D WD GH + V C+ + D + +G + + W+
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 531 MKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
M+T++ L GH ++YA+ W D + S +D L +W
Sbjct: 45 MRTRRT---LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 82
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 137/337 (40%), Gaps = 58/337 (17%)
Query: 246 EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI-GQPMRGHKQWITALSWEPFH 304
GH + + W DS+ LVS ++G + WDS T ++ P+R W+ ++ P
Sbjct: 63 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR--SSWVMTCAYAPSG 120
Query: 305 -------LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSAS 357
L++ C + ++G +R+ R L HT ++C R+ I ++S
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRV--------SRELAGHTGYLSCCRFLDDNQIVTSS 172
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKH 417
D T +W G T GH V +L+L+
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---------------------------- 204
Query: 418 ALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
P+ VSG+ D + LW+ +E TGH+ IN + F P+G A+
Sbjct: 205 ---------PDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 478 ASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S D + +L+D R + + T + + V++S RLL++G D VW+
Sbjct: 255 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Query: 536 IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH + V + DG VA+G D L++W
Sbjct: 315 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 15/209 (7%)
Query: 374 RTLEGHAHWVNTLALSTDYLMRVEATSTGGF----KYDP----ANPEESSKHALAKYQAQ 425
RTL GH + + TD + V A+ G Y A P SS Y
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-- 117
Query: 426 CPEGEKLVSGSDDFTLFLWNPEKEKKSLA---RMTGHQQLINCVEFSPDGRIIASASFDK 482
P G + G D ++N + + ++ + GH ++C F D +I+ S S D
Sbjct: 118 -PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 175
Query: 483 SIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPG 542
+ LWD G+ TT GH V ++ + D+RL VSG+ D++ K+W+++ Q G
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 543 HGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
H ++ A+ + P+G A+G D RL+
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLF 264
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 118/310 (38%), Gaps = 43/310 (13%)
Query: 97 RPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQT-----PL-----F 146
R R ++ GH + ++ + + R L S S D + WD T PL
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 112
Query: 147 KCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGH 206
C P YV L ++ + L T E R + + GH
Sbjct: 113 TCAYAPSGNYV----ACGGLDNICSIYNLKTRE---------------GNVRVSRELAGH 153
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS 266
+ +F + + + + SGDTT WD+ T GH V+ ++ +PD++ VS
Sbjct: 154 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 212
Query: 267 GCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
G + WD G Q GH+ I A+ + P FA+ D R++D+
Sbjct: 213 GACDASAKLWDVREG-MCRQTFTGHESDINAICFFP-----NGNAFATGSDDATCRLFDL 266
Query: 327 ILSQCVRVLTSHTRSVTC----IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAH 381
Q ++T ++ C + + SG L+ + D VW A L GH +
Sbjct: 267 RADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 324
Query: 382 WVNTLALSTD 391
V+ L ++ D
Sbjct: 325 RVSCLGVTDD 334
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETE 161
C + GH + ++ F PNG + A+GS D T R +D+ L + +
Sbjct: 229 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 288
Query: 162 ITKTLADVLP-LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+K+ +L D N V D + +A + GH V + + +G
Sbjct: 289 FSKSGRLLLAGYDDFNC-NVWDALKADRA-----------GVLAGHDNRVSCLGVTDDGM 336
Query: 221 SLASGSGDTTVRFWD 235
++A+GS D+ ++ W+
Sbjct: 337 AVATGSWDSFLKIWN 351
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLAD 168
H V+S+ +P+ R SG+ D + + WDV C T F +E++I
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQT---FTGHESDINAIC-- 244
Query: 169 VLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC-TSSMPGHAEAVISVKFSPNGRSLASGSG 227
P D + +F +R T S + SV FS +GR L +G
Sbjct: 245 FFPNGNAFATGSDDATCR---LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 301
Query: 228 DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
D WD GH + V C+ + D + +G + + W+
Sbjct: 302 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 531 MKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
M+T++ L GH ++YA+ W D + S +D L +W
Sbjct: 56 MRTRRT---LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 93
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 288 MRGH-KQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIR 346
+RGH IT L +E ++ + D IR++D I + + L+ H V ++
Sbjct: 117 LRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 169
Query: 347 WGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKY 406
+ G++ S S DRT++VW G EGH V L + KY
Sbjct: 170 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL----------DIVEYKNIKY 219
Query: 407 DPANPEESSKHA--LAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLIN 464
+++ H L K + GE+ D+ L PE+ + + GH +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEE-----HDYPLVFHTPEENPYFVGVLRGHMASVR 274
Query: 465 CVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADS 524
V S G I+ S S+D ++ +WD K + L GH +Y + + + +S S D+
Sbjct: 275 TV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 525 TLKVWNMKTKKIEQDLPGH 543
T+++W+++ ++ L GH
Sbjct: 333 TIRIWDLENGELMYTLQGH 351
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 203 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLC--IAWSPD 260
+ GH V ++K++ +G L SGS D TVR WD+ EGH V C I +
Sbjct: 158 LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 261 SKQLVSGCKNGVIHAW----DSST---GKQIGQPM---------------RGHKQWITAL 298
K +V+G ++ +H W +SS G++ P+ RGH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 299 SWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHT-RSVTCIRWGGSGLIYSAS 357
S S D + +WDV +C+ +L+ HT R + I SAS
Sbjct: 277 S-------GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEAT-STGGFKYDPANPEESSK 416
D TI++W +G + TL+GH V L LS +L+ A S G+ + + + S
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 417 HA-LAKYQAQCPEGEKLVSGSDD-FTLF 442
H L+ LVSGS++ F ++
Sbjct: 390 HTNLSAITTFYVSDNILVSGSENQFNIY 417
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 35/227 (15%)
Query: 375 TLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPE---ESSKHALAKYQAQCPEGEK 431
TL GH V T D + A YD N + + S H + + G
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI--IASASFDKSIKLWDG 489
LVSGS D T+ +W+ +K + GH + C++ I I + S D ++ +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW-- 232
Query: 490 RIGK-------------------------FITTLRGHVQAVYMVAWSSDSRLLVSGSADS 524
++ K F+ LRGH+ +V V S ++VSGS D+
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN 290
Query: 525 TLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
TL VW++ K L GH D +Y+ + + ++ S D +R+W
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 439 FTLFLWNPEKEKKSLARMTGHQ-QLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITT 497
F L W K + GH +I C++F D +I A DK I+++D KF+
Sbjct: 100 FILKNWYNPKFVPQRTTLRGHMTSVITCLQF-EDNYVITGAD-DKMIRVYDSINKKFLLQ 157
Query: 498 LRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWA--PD 555
L GH V+ + ++ +LVSGS D T++VW++K GH V +D +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 556 GEKVASGGKDKVLRLWQ 572
+ + +G +D L +W+
Sbjct: 217 IKYIVTGSRDNTLHVWK 233
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 23/232 (9%)
Query: 106 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKT 165
+ GH V ++K++ +G L SGS D TVR WD+ EG + K
Sbjct: 158 LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 166 LADVLPLDTLNTEEVVDIVYQKQA-----------VFQV-RPVTRCTSSMPGHAEAVISV 213
+ ++ NT V + + VF + GH +V +V
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVI 273
S +G + SGS D T+ WDV L+ GH + + + K+ +S + I
Sbjct: 277 --SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 274 HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWD 325
WD G ++ ++GH + L + S+ DG+IR WD
Sbjct: 335 RIWDLENG-ELMYTLQGHTALVGLLRLSD-------KFLVSAAADGSIRGWD 378
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 14/189 (7%)
Query: 102 CTSSMPGHAEAV--ISVKFSPNGRSLASGSGDTTVRFWDVTTQTPL---FKCEGTPYLFY 156
CT GH V + + N + + +GS D T+ W + ++ + + P +F+
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 157 VNETE------ITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAV 210
E + +A V + + VV Y + +C + GH + +
Sbjct: 255 TPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313
Query: 211 ISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKN 270
S + + S S DTT+R WD+ ++ +GH V + S K LVS +
Sbjct: 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD 371
Query: 271 GVIHAWDSS 279
G I WD++
Sbjct: 372 GSIRGWDAN 380
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG 150
+C + GH + + S + + S S DTT+R WD+ ++ +G
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 137/337 (40%), Gaps = 58/337 (17%)
Query: 246 EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI-GQPMRGHKQWITALSWEPFH 304
GH + + W DS+ L+S ++G + WDS T ++ P+R W+ ++ P
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR--SSWVMTCAYAPSG 109
Query: 305 -------LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSAS 357
L++ C + ++G +R+ R L HT ++C R+ I ++S
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRV--------SRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKH 417
D T +W G T GH V +L+L+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---------------------------- 193
Query: 418 ALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
P+ VSG+ D + LW+ +E TGH+ IN + F P+G A+
Sbjct: 194 ---------PDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 478 ASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S D + +L+D R + + T + + V++S RLL++G D VW+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 536 IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH + V + DG VA+G D L++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 333 RVLTSHTRSVTCIRWG-GSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTD 391
R L H + + WG S L+ SASQD + +W + + + WV T A +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-- 106
Query: 392 YLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKK 451
P G + G D ++N + +
Sbjct: 107 -----------------------------------PSGNYVACGGLDNICSIYNLKTREG 131
Query: 452 SLA---RMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMV 508
++ + GH ++C F D +I+ S S D + LWD G+ TT GH V +
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 509 AWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVL 568
+ + D+RL VSG+ D++ K+W+++ Q GH ++ A+ + P+G A+G D
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 569 RLW 571
RL+
Sbjct: 251 RLF 253
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 118/310 (38%), Gaps = 43/310 (13%)
Query: 97 RPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQT-----PL-----F 146
R R ++ GH + ++ + + R L S S D + WD T PL
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 147 KCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGH 206
C P YV L ++ + L T E R + + GH
Sbjct: 102 TCAYAPSGNYV----ACGGLDNICSIYNLKTRE---------------GNVRVSRELAGH 142
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS 266
+ +F + + + + SGDTT WD+ T GH V+ ++ +PD++ VS
Sbjct: 143 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 267 GCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
G + WD G Q GH+ I A+ + P FA+ D R++D+
Sbjct: 202 GACDASAKLWDVREG-MCRQTFTGHESDINAICFFP-----NGNAFATGSDDATCRLFDL 255
Query: 327 ILSQCVRVLTSHTRSVTC----IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAH 381
Q ++T ++ C + + SG L+ + D VW A L GH +
Sbjct: 256 RADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 382 WVNTLALSTD 391
V+ L ++ D
Sbjct: 314 RVSCLGVTDD 323
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETE 161
C + GH + ++ F PNG + A+GS D T R +D+ L + +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 162 ITKTLADVLP-LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+K+ +L D N V D + +A + GH V + + +G
Sbjct: 278 FSKSGRLLLAGYDDFNC-NVWDALKADRA-----------GVLAGHDNRVSCLGVTDDGM 325
Query: 221 SLASGSGDTTVRFWD 235
++A+GS D+ ++ W+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLAD 168
H V+S+ +P+ R SG+ D + + WDV C T F +E++I
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQT---FTGHESDINAIC-- 233
Query: 169 VLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC-TSSMPGHAEAVISVKFSPNGRSLASGSG 227
P D + +F +R T S + SV FS +GR L +G
Sbjct: 234 FFPNGNAFATGSDDATCR---LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 228 DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
D WD GH + V C+ + D + +G + + W+
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 137/337 (40%), Gaps = 58/337 (17%)
Query: 246 EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI-GQPMRGHKQWITALSWEPFH 304
GH + + W DS+ L+S ++G + WDS T ++ P+R W+ ++ P
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR--SSWVMTCAYAPSG 109
Query: 305 -------LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSAS 357
L++ C + ++G +R+ R L HT ++C R+ I ++S
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRV--------SRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKH 417
D T +W G T GH V +L+L+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---------------------------- 193
Query: 418 ALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
P+ VSG+ D + LW+ +E TGH+ IN + F P+G A+
Sbjct: 194 ---------PDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 478 ASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S D + +L+D R + + T + + V++S RLL++G D VW+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 536 IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH + V + DG VA+G D L++W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 333 RVLTSHTRSVTCIRWG-GSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTD 391
R L H + + WG S L+ SASQD + +W + + + WV T A +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-- 106
Query: 392 YLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKK 451
P G + G D ++N + +
Sbjct: 107 -----------------------------------PSGNYVACGGLDNICSIYNLKTREG 131
Query: 452 SLA---RMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMV 508
++ + GH ++C F D +I+ S S D + LWD G+ TT GH V +
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 509 AWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVL 568
+ + D+RL VSG+ D++ K+W+++ Q GH ++ A+ + P+G A+G D
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 569 RLW 571
RL+
Sbjct: 251 RLF 253
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 118/310 (38%), Gaps = 43/310 (13%)
Query: 97 RPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQT-----PL-----F 146
R R ++ GH + ++ + + R L S S D + WD T PL
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 147 KCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGH 206
C P YV L ++ + L T E R + + GH
Sbjct: 102 TCAYAPSGNYV----ACGGLDNICSIYNLKTRE---------------GNVRVSRELAGH 142
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS 266
+ +F + + + + SGDTT WD+ T GH V+ ++ +PD++ VS
Sbjct: 143 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 267 GCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
G + WD G Q GH+ I A+ + P FA+ D R++D+
Sbjct: 202 GACDASAKLWDVREG-MCRQTFTGHESDINAICFFP-----NGNAFATGSDDATCRLFDL 255
Query: 327 ILSQCVRVLTSHTRSVTC----IRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAH 381
Q ++T ++ C + + SG L+ + D VW A L GH +
Sbjct: 256 RADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 382 WVNTLALSTD 391
V+ L ++ D
Sbjct: 314 RVSCLGVTDD 323
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETE 161
C + GH + ++ F PNG + A+GS D T R +D+ L + +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 162 ITKTLADVLP-LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+K+ +L D N V D + +A + GH V + + +G
Sbjct: 278 FSKSGRLLLAGYDDFNC-NVWDALKADRA-----------GVLAGHDNRVSCLGVTDDGM 325
Query: 221 SLASGSGDTTVRFWD 235
++A+GS D+ ++ W+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLAD 168
H V+S+ +P+ R SG+ D + + WDV C T F +E++I
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQT---FTGHESDINAIC-- 233
Query: 169 VLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC-TSSMPGHAEAVISVKFSPNGRSLASGSG 227
P D + +F +R T S + SV FS +GR L +G
Sbjct: 234 FFPNGNAFATGSDDATCR---LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 228 DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
D WD GH + V C+ + D + +G + + W+
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%)
Query: 425 QCPE-GEKLVSGSDDFTLFLWNPEKEKKSLA--------RMTGHQQLINCVEFSPDGRII 475
Q PE K+VS S D TL W P ++ S R+ GH ++ V S +G
Sbjct: 23 QTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFA 82
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
SAS+D S++LW+ + G+ GH + V VA+S D+R +VSG D+ L+VWN+K +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 536 IEQDLPG-HGDEVYAVDWAP--DGEKVASGGKDKVLRLW 571
+ G H D V V ++P D + SGG D ++++W
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 50/231 (21%)
Query: 353 IYSASQDRTIKVW---------RASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGG 403
+ S S+D+T+ W S G+ R LEGH+ +V+ +ALS +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNN------------ 78
Query: 404 FKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLI 463
G VS S D +L LWN + + + GH + +
Sbjct: 79 -------------------------GNFAVSASWDHSLRLWNLQNGQCQY-KFLGHTKDV 112
Query: 464 NCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRG-HVQAVYMVAWSS--DSRLLVSG 520
V FSPD R I S D ++++W+ + T RG H V V +S D+ ++VSG
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 521 SADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D+ +KVW++ T ++ DL GH + V +V +PDG AS KD V RLW
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 194 RPVTRCTSSMP-----GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGH 248
R + C+ +P GH+ V V S NG S S D ++R W++ +K GH
Sbjct: 49 RHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGH 108
Query: 249 KHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRG-HKQWITALSWEPFHLNH 307
VL +A+SPD++Q+VSG ++ + W+ G+ + RG H W++ + + P +
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP---SL 164
Query: 308 QCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWR 366
S G D +++WD+ + V L HT VT + G L S+ +D ++W
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANP----EESSKH-ALAK 421
+ G + A +N + S + AT G +D N E + +H K
Sbjct: 225 LTKGEALSEMAAGAP-INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKK 283
Query: 422 YQAQC------PEGEKLVSGSDDFTLFLW 444
+C +G L SG D + +W
Sbjct: 284 IVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 114/288 (39%), Gaps = 35/288 (12%)
Query: 97 RPVTRCTSSMP-----GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGT 151
R + C+ +P GH+ V V S NG S S D ++R W++ +K
Sbjct: 49 RHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK---- 104
Query: 152 PYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVI 211
++ T+ ++A N + V V+ V+ T S H + V
Sbjct: 105 ----FLGHTKDVLSVA----FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVS 156
Query: 212 SVKFSP--NGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCK 269
V+FSP + + SG D V+ WD+ T + +GH ++V + SPD S K
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 270 NGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILS 329
+GV WD + G+ + + G I + + P R + + + IRI+D+
Sbjct: 217 DGVARLWDLTKGEALSEMAAGAP--INQICFSPN------RYWMCAATEKGIRIFDLENK 268
Query: 330 QCVRVLTSHTRS-------VTCIRWGGSG-LIYSASQDRTIKVWRASD 369
+ L + I W G +YS D I+VW S+
Sbjct: 269 DIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 61/344 (17%)
Query: 247 GHKHWVLCIAW--SPDSK-QLVSGCKNGVIHAWDSSTGKQ-----IGQPMR---GHKQWI 295
GH+ WV +A +P++ ++VS ++ + +W + + G P R GH ++
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 296 TALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL-IY 354
+ ++ L++ S+ D ++R+W++ QC HT+ V + + I
Sbjct: 71 SDVA-----LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 355 SASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEES 414
S +D ++VW M TL AH TD++ V ++ P+
Sbjct: 126 SGGRDNALRVWNVKGECM-HTLSRGAH--------TDWVSCV--------RFSPS----- 163
Query: 415 SKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI 474
+ +VSG D + +W+ + + + GH + V SPDG +
Sbjct: 164 ------------LDAPVIVSGGWDNLVKVWD-LATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 475 IASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK 534
AS+ D +LWD G+ ++ + + + +S + R + + + +++++++ K
Sbjct: 211 CASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPN-RYWMCAATEKGIRIFDLENK 268
Query: 535 KIEQDL-PGHGD------EVYAVDWAPDGEKVASGGKDKVLRLW 571
I +L P H E ++ W+ DG + SG D V+R+W
Sbjct: 269 DIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 53/336 (15%)
Query: 246 EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDS-STGKQIGQPMRGHKQWITALSWEPFH 304
+GH + VLC+ W D +++VS ++G + WDS +T K+ M W+ A ++ P
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--TWVMACAYAPSG 118
Query: 305 LNHQCRRFASSGKDGAIRIWDVI------LSQCVRVLTSHTRSVTCIRWGGSGL-IYSAS 357
C G D ++ + ++ + + HT ++ + S + I +AS
Sbjct: 119 CAIAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 358 QDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKH 417
D T +W G + ++ GH V L L+ P E+
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLA---------------------PSET--- 209
Query: 418 ALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
G VSG D +W+ + + + H+ +N V + P G AS
Sbjct: 210 -----------GNTFVSGGCDKKAMVWDM-RSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Query: 478 ASFDKSIKLWDGRIGK--FITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
S D + +L+D R + I + + V +S RLL +G D T+ VW++
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 536 IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
L GH + V + +PDG SG D LR+W
Sbjct: 318 RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 27/226 (11%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S+ H + + F+ + + + SGD T WDV + L G
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG------------ 196
Query: 165 TLADVLPLDTLNTEEVVDIVY----QKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
ADVL LD +E V +K V+ +R +C + H V SV++ P+G
Sbjct: 197 --ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGD 253
Query: 221 SLASGSGDTTVRFWDVTT--QTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDS 278
+ ASGS D T R +D+ + ++ E + +S + L +G + I+ WD
Sbjct: 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIW 324
G ++ + GH+ ++ L P F S D +R+W
Sbjct: 314 LKGSRV-SILFGHENRVSTLRVSP-----DGTAFCSGSWDHTLRVW 353
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 20/196 (10%)
Query: 47 LLQQDEGTPYLFYVNETEITKTL----ADVLPLDTLNTEEVVDIVY----QKQAVFQVRP 98
L +GT L+ V ++ ++ ADVL LD +E V +K V+ +R
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 99 VTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVN 158
+C + H V SV++ P+G + ASGS D T R +D+ + +F +
Sbjct: 230 -GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 159 ETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPN 218
+ +L+ L N + V+ V +R S + GH V +++ SP+
Sbjct: 289 SVDF--SLSGRLLFAGYNDYTI--------NVWDVLKGSR-VSILFGHENRVSTLRVSPD 337
Query: 219 GRSLASGSGDTTVRFW 234
G + SGS D T+R W
Sbjct: 338 GTAFCSGSWDHTLRVW 353
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 102/260 (39%), Gaps = 27/260 (10%)
Query: 333 RVLTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTD 391
R L H V C+ W I S+SQD + VW + + WV A
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA---- 113
Query: 392 YLMRVEATSTGGFK---------YDPANPEESSKHALA---KYQAQCP---EGEKLVSGS 436
Y A + GG +D + K ++A Y + C ++++ S
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 437 DDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPD--GRIIASASFDKSIKLWDGRIGKF 494
D T LW+ E + L GH + C++ +P G S DK +WD R G+
Sbjct: 174 GDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 495 ITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVY---AVD 551
+ H V V + SGS D+T ++++++ + E + ++ +VD
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAIYSKESIIFGASSVD 291
Query: 552 WAPDGEKVASGGKDKVLRLW 571
++ G + +G D + +W
Sbjct: 292 FSLSGRLLFAGYNDYTINVW 311
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 491 IGKFIT----TLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDE 546
+G+F+ TL+GH V + W D R +VS S D + VW+ T E +
Sbjct: 49 LGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTW 108
Query: 547 VYAVDWAPDGEKVASGGKDKVLRLW 571
V A +AP G +A GG D ++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVY 133
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 531 MKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQN 573
MKT++ L GHG++V +DW D ++ S +D + +W +
Sbjct: 54 MKTRRT---LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS 93
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 60/176 (34%)
Query: 451 KSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQA-----V 505
K+ + GH + C+++ D R I S+S D + +WD TT + H V
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-----FTTNKEHAVTMPCTWV 109
Query: 506 YMVAWSSDSRLLVSGSADSTLKV------------------------------------- 528
A++ + G D+ V
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI 169
Query: 529 -----------WNMKTKKIEQDLPGHGDEVYAVDWAPD--GEKVASGGKDKVLRLW 571
W++++ ++ Q GHG +V +D AP G SGG DK +W
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 60/345 (17%)
Query: 245 CEGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEP 302
EGH WV +A S L+ S ++ + +W + ++ G P+R K
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------H 64
Query: 303 FHLNHQCRRFA------SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG-SGLIYS 355
H+ C A S+ D +R+WDV + + H V + + +I S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 356 ASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESS 415
S+D+TIKVW G TL GH WV+ + RV P E +
Sbjct: 125 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQV--------RVV-------------PNEKA 162
Query: 416 KHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ ++S +D + WN + + A GH IN + SPDG +I
Sbjct: 163 DD----------DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLI 211
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
ASA D I LW+ K + TL + V+ +A+S + L + +A + +KV+++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269
Query: 536 IEQDL----PGHGD--EVYAVD--WAPDGEKVASGGKDKVLRLWQ 572
+ DL G+ E +AV W+ DG+ + +G D V+R+WQ
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 8/246 (3%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S GH+ V + +G S S D T+R WDV T + GHK V+ + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH-LNHQCRRFASSGKDGA 320
++SG ++ I W + Q + GH W++ + P + S+G D
Sbjct: 120 SMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGH 379
++ W++ Q H ++ + G LI SA +D I +W + TL
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 380 AHWVNTLALSTDYLMRVEATSTG--GFKYDPANPEESSKHALAKY-QAQCPEGEKLVSGS 436
V +LA S + AT+TG F DP + + A Y +A P L +
Sbjct: 238 DE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 437 DDFTLF 442
D TLF
Sbjct: 297 DGQTLF 302
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 72/355 (20%)
Query: 202 SMPGHAEAVISVKFS---PNGRSLASGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVL 253
++ GH V S+ S PN L S S D T+ W +T P+ +GH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 254 CIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA 313
+ D +S + + WD +TG+ Q GHK + ++ ++ +
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETY-QRFVGHKSDVMSVD-----IDKKASMII 123
Query: 314 SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-------GGSGLIYSASQDRTIKVWR 366
S +D I++W I QC+ L H V+ +R S I SA D+ +K W
Sbjct: 124 SGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ + GH +NTL S
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS------------------------------------- 205
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P+G + S D + LWN KK++ ++ ++ + + FSP+ +A+A+ IK+
Sbjct: 206 PDGTLIASAGKDGEIMLWNLA-AKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA-TGIKV 262
Query: 487 WDGRIGKFITTLR----GHVQA----VYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
+ + LR G+ +A +AWS+D + L +G D+ ++VW + T
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 83/240 (34%), Gaps = 68/240 (28%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S GH+ V + +G S S D T+R WDV T G Y +V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--------GETYQRFV------- 104
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
GH V+SV + S
Sbjct: 105 ----------------------------------------GHKSDVMSVDIDKKASMIIS 124
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSP------DSKQLVSGCKNGVIHAWDS 278
GS D T++ W + Q L GH WV + P DS ++S + ++ AW+
Sbjct: 125 GSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ QI GH I L+ P AS+GKDG I +W++ + + L++
Sbjct: 184 NQ-FQIEADFIGHNSNINTLTASP-----DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV----NETEIT 163
GH + ++ SP+G +AS D + W++ + ++ +F + N +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEA----VISVKFSPNG 219
A + + +L+ + +VD +RP G+++A +S+ +S +G
Sbjct: 254 AATATGIKVFSLDPQYLVD---------DLRP------EFAGYSKAAEPHAVSLAWSADG 298
Query: 220 RSLASGSGDTTVRFWDVTT 238
++L +G D +R W V T
Sbjct: 299 QTLFAGYTDNVIRVWQVMT 317
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 60/345 (17%)
Query: 245 CEGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEP 302
EGH WV +A S L+ S ++ + +W + ++ G P+R K
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------H 64
Query: 303 FHLNHQCRRFA------SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG-SGLIYS 355
H+ C A S+ D +R+WDV + + H V + + +I S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 356 ASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESS 415
S+D+TIKVW G TL GH WV+ + RV P E +
Sbjct: 125 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQV--------RVV-------------PNEKA 162
Query: 416 KHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ ++S +D + WN + + A GH IN + SPDG +I
Sbjct: 163 DD----------DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLI 211
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
ASA D I LW+ K + TL + V+ +A+S + L + +A + +KV+++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269
Query: 536 IEQDL----PGH--GDEVYAVD--WAPDGEKVASGGKDKVLRLWQ 572
+ DL G+ E +AV W+ DG+ + +G D V+R+WQ
Sbjct: 270 LVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 98/246 (39%), Gaps = 8/246 (3%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S GH+ V + +G S S D T+R WDV T + GHK V+ + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH-LNHQCRRFASSGKDGA 320
++SG ++ I W + Q + GH W++ + P + S+G D
Sbjct: 120 SMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGH 379
++ W++ Q H ++ + G LI SA +D I +W + TL
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 380 AHWVNTLALSTDYLMRVEATSTG--GFKYDPANPEESSKHALAKYQAQC-PEGEKLVSGS 436
V +LA S + AT+TG F DP + + A Y A P L +
Sbjct: 238 DE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSA 296
Query: 437 DDFTLF 442
D TLF
Sbjct: 297 DGQTLF 302
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 72/355 (20%)
Query: 202 SMPGHAEAVISVKFS---PNGRSLASGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVL 253
++ GH V S+ S PN L S S D T+ W +T P+ +GH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 254 CIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA 313
+ D +S + + WD +TG+ Q GHK + ++ ++ +
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETY-QRFVGHKSDVMSVD-----IDKKASMII 123
Query: 314 SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-------GGSGLIYSASQDRTIKVWR 366
S +D I++W I QC+ L H V+ +R S I SA D+ +K W
Sbjct: 124 SGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ + GH +NTL S
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS------------------------------------- 205
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P+G + S D + LWN KK++ ++ ++ + + FSP+ +A+A+ IK+
Sbjct: 206 PDGTLIASAGKDGEIMLWNLA-AKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA-TGIKV 262
Query: 487 WDGRIGKFITTLR----GHVQA----VYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
+ + LR G+ A +AWS+D + L +G D+ ++VW + T
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 83/240 (34%), Gaps = 68/240 (28%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S GH+ V + +G S S D T+R WDV T G Y +V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--------GETYQRFV------- 104
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
GH V+SV + S
Sbjct: 105 ----------------------------------------GHKSDVMSVDIDKKASMIIS 124
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSP------DSKQLVSGCKNGVIHAWDS 278
GS D T++ W + Q L GH WV + P DS ++S + ++ AW+
Sbjct: 125 GSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ QI GH I L+ P AS+GKDG I +W++ + + L++
Sbjct: 184 NQ-FQIEADFIGHNSNINTLTASP-----DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV----NETEIT 163
GH + ++ SP+G +AS D + W++ + ++ +F + N +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRP-VTRCTSSMPGHAEAVISVKFSPNGRSL 222
A + + +L+ + +VD +RP +++ HA +S+ +S +G++L
Sbjct: 254 AATATGIKVFSLDPQYLVD---------DLRPEFAGYSAAAEPHA---VSLAWSADGQTL 301
Query: 223 ASGSGDTTVRFWDVTT 238
+G D +R W V T
Sbjct: 302 FAGYTDNVIRVWQVMT 317
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 60/345 (17%)
Query: 245 CEGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEP 302
EGH WV +A S L+ S ++ + +W + ++ G P+R K
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------H 64
Query: 303 FHLNHQCRRFA------SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG-SGLIYS 355
H+ C A S+ D +R+WDV + + H V + + +I S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 356 ASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESS 415
S+D+TIKVW G TL GH WV+ + RV P E +
Sbjct: 125 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQV--------RVV-------------PNEKA 162
Query: 416 KHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ ++S +D + WN + + A GH IN + SPDG +I
Sbjct: 163 DD----------DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLI 211
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
ASA D I LW+ K + TL + V+ +A+S + L + +A + +KV+++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269
Query: 536 IEQDL----PGHGD--EVYAVD--WAPDGEKVASGGKDKVLRLWQ 572
+ DL G+ E +AV W+ DG+ + +G D V+R+WQ
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 8/246 (3%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S GH+ V + +G S S D T+R WDV T + GHK V+ + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH-LNHQCRRFASSGKDGA 320
++SG ++ I W + Q + GH W++ + P + S+G D
Sbjct: 120 SMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGH 379
++ W++ Q H ++ + G LI SA +D I +W + TL
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 380 AHWVNTLALSTDYLMRVEATSTG--GFKYDPANPEESSKHALAKY-QAQCPEGEKLVSGS 436
V +LA S + AT+TG F DP + + A Y +A P L +
Sbjct: 238 DE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 437 DDFTLF 442
D TLF
Sbjct: 297 DGQTLF 302
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 72/355 (20%)
Query: 202 SMPGHAEAVISVKFS---PNGRSLASGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVL 253
++ GH V S+ S PN L S S D T+ W +T P+ +GH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 254 CIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA 313
+ D +S + + WD +TG+ Q GHK + ++ ++ +
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETY-QRFVGHKSDVMSVD-----IDKKASMII 123
Query: 314 SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-------GGSGLIYSASQDRTIKVWR 366
S +D I++W I QC+ L H V+ +R S I SA D+ +K W
Sbjct: 124 SGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ + GH +NTL S
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS------------------------------------- 205
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P+G + S D + LWN KK++ ++ ++ + + FSP+ +A+A+ IK+
Sbjct: 206 PDGTLIASAGKDGEIMLWNLA-AKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA-TGIKV 262
Query: 487 WDGRIGKFITTLR----GHVQA----VYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
+ + LR G+ +A +AWS+D + L +G D+ ++VW + T
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 83/240 (34%), Gaps = 68/240 (28%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S GH+ V + +G S S D T+R WDV T G Y +V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--------GETYQRFV------- 104
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
GH V+SV + S
Sbjct: 105 ----------------------------------------GHKSDVMSVDIDKKASMIIS 124
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSP------DSKQLVSGCKNGVIHAWDS 278
GS D T++ W + Q L GH WV + P DS ++S + ++ AW+
Sbjct: 125 GSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ QI GH I L+ P AS+GKDG I +W++ + + L++
Sbjct: 184 NQ-FQIEADFIGHNSNINTLTASP-----DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV----NETEIT 163
GH + ++ SP+G +AS D + W++ + ++ +F + N +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEA----VISVKFSPNG 219
A + + +L+ + +VD +RP G+++A +S+ +S +G
Sbjct: 254 AATATGIKVFSLDPQYLVD---------DLRP------EFAGYSKAAEPHAVSLAWSADG 298
Query: 220 RSLASGSGDTTVRFWDVTT 238
++L +G D +R W V T
Sbjct: 299 QTLFAGYTDNVIRVWQVMT 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 60/345 (17%)
Query: 245 CEGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEP 302
EGH WV +A S L+ S ++ + +W + ++ G P+R K
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------H 58
Query: 303 FHLNHQCRRFA------SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG-SGLIYS 355
H+ C A S+ D +R+WDV + + H V + + +I S
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 356 ASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESS 415
S+D+TIKVW G TL GH WV+ + RV P E +
Sbjct: 119 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQV--------RVV-------------PNEKA 156
Query: 416 KHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ ++S +D + WN + + A GH IN + SPDG +I
Sbjct: 157 DD----------DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLI 205
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
ASA D I LW+ K + TL + V+ +A+S + L + +A + +KV+++ +
Sbjct: 206 ASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 263
Query: 536 IEQDL----PGHGD--EVYAVD--WAPDGEKVASGGKDKVLRLWQ 572
+ DL G+ E +AV W+ DG+ + +G D V+R+WQ
Sbjct: 264 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 8/246 (3%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S GH+ V + +G S S D T+R WDV T + GHK V+ + +
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 113
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH-LNHQCRRFASSGKDGA 320
++SG ++ I W + Q + GH W++ + P + S+G D
Sbjct: 114 SMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGH 379
++ W++ Q H ++ + G LI SA +D I +W + TL
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 380 AHWVNTLALSTDYLMRVEATSTG--GFKYDPANPEESSKHALAKY-QAQCPEGEKLVSGS 436
V +LA S + AT+TG F DP + + A Y +A P L +
Sbjct: 232 DE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 290
Query: 437 DDFTLF 442
D TLF
Sbjct: 291 DGQTLF 296
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 72/355 (20%)
Query: 202 SMPGHAEAVISVKFS---PNGRSLASGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVL 253
++ GH V S+ S PN L S S D T+ W +T P+ +GH H V
Sbjct: 6 TLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 63
Query: 254 CIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA 313
+ D +S + + WD +TG+ Q GHK + ++ ++ +
Sbjct: 64 DCTLTADGAYALSASWDKTLRLWDVATGETY-QRFVGHKSDVMSVD-----IDKKASMII 117
Query: 314 SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-------GGSGLIYSASQDRTIKVWR 366
S +D I++W I QC+ L H V+ +R S I SA D+ +K W
Sbjct: 118 SGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ + GH +NTL S
Sbjct: 177 LNQFQIEADFIGHNSNINTLTAS------------------------------------- 199
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P+G + S D + LWN KK++ ++ ++ + + FSP+ +A+A+ IK+
Sbjct: 200 PDGTLIASAGKDGEIMLWNLA-AKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA-TGIKV 256
Query: 487 WDGRIGKFITTLR----GHVQA----VYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
+ + LR G+ +A +AWS+D + L +G D+ ++VW + T
Sbjct: 257 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 83/240 (34%), Gaps = 68/240 (28%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S GH+ V + +G S S D T+R WDV T G Y +V
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--------GETYQRFV------- 98
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
GH V+SV + S
Sbjct: 99 ----------------------------------------GHKSDVMSVDIDKKASMIIS 118
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSP------DSKQLVSGCKNGVIHAWDS 278
GS D T++ W + Q L GH WV + P DS ++S + ++ AW+
Sbjct: 119 GSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ QI GH I L+ P AS+GKDG I +W++ + + L++
Sbjct: 178 NQ-FQIEADFIGHNSNINTLTASP-----DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV----NETEIT 163
GH + ++ SP+G +AS D + W++ + ++ +F + N +
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 247
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEA----VISVKFSPNG 219
A + + +L+ + +VD +RP G+++A +S+ +S +G
Sbjct: 248 AATATGIKVFSLDPQYLVD---------DLRP------EFAGYSKAAEPHAVSLAWSADG 292
Query: 220 RSLASGSGDTTVRFWDVTT 238
++L +G D +R W V T
Sbjct: 293 QTLFAGYTDNVIRVWQVMT 311
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 147/345 (42%), Gaps = 60/345 (17%)
Query: 245 CEGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEP 302
EGH WV +A S L+ S ++ + +W + ++ G P+R K
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------H 64
Query: 303 FHLNHQCRRFA------SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG-SGLIYS 355
H+ C A S+ D +R+WDV + + H V + + +I S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 356 ASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESS 415
S+D+TIKVW G TL GH WV+ + + P E +
Sbjct: 125 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVV---------------------PNEKA 162
Query: 416 KHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ ++S +D + WN + + A GH IN + SPDG +I
Sbjct: 163 DD----------DSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLI 211
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
ASA D I LW+ K + TL + V+ +A+S + L + +A + +KV+++ +
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269
Query: 536 IEQDL----PGHGD--EVYAVD--WAPDGEKVASGGKDKVLRLWQ 572
+ DL G+ E +AV W+ DG+ + +G D V+R+WQ
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 8/246 (3%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S GH+ V + +G S S D T+R WDV T + GHK V+ + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH-LNHQCRRFASSGKDGA 320
++SG ++ I W + Q + GH W++ + P + S+G D
Sbjct: 120 SMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGH 379
++ W++ Q H ++ + G LI SA +D I +W + TL
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 380 AHWVNTLALSTDYLMRVEATSTG--GFKYDPANPEESSKHALAKY-QAQCPEGEKLVSGS 436
V +LA S + AT+TG F DP + + A Y +A P L +
Sbjct: 238 DE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 437 DDFTLF 442
D TLF
Sbjct: 297 DGQTLF 302
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 139/351 (39%), Gaps = 72/351 (20%)
Query: 202 SMPGHAEAVISVKFS---PNGRSLASGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVL 253
++ GH V S+ S PN L S S D T+ W +T P+ +GH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 254 CIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA 313
+ D +S + + WD +TG+ Q GHK + ++ ++ +
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETY-QRFVGHKSDVMSVD-----IDKKASMII 123
Query: 314 SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-------GGSGLIYSASQDRTIKVWR 366
S +D I++W I QC+ L H V+ +R S I SA D+ +K W
Sbjct: 124 SGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ + GH +NTL S
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS------------------------------------- 205
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P+G + S D + LWN KK++ ++ ++ + + FSP+ +A+A+ IK+
Sbjct: 206 PDGTLIASAGKDGEIMLWNLA-AKKAMYTLSAQDEVFS-LAFSPNRYWLAAATA-TGIKV 262
Query: 487 WDGRIGKFITTLR----GHVQA----VYMVAWSSDSRLLVSGSADSTLKVW 529
+ + LR G+ +A +AWS+D + L +G D+ ++VW
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 83/240 (34%), Gaps = 68/240 (28%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S GH+ V + +G S S D T+R WDV T G Y +V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--------GETYQRFV------- 104
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
GH V+SV + S
Sbjct: 105 ----------------------------------------GHKSDVMSVDIDKKASMIIS 124
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSP------DSKQLVSGCKNGVIHAWDS 278
GS D T++ W + Q L GH WV + P DS ++S + ++ AW+
Sbjct: 125 GSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ QI GH I L+ P AS+GKDG I +W++ + + L++
Sbjct: 184 NQ-FQIEADFIGHNSNINTLTASP-----DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV----NETEIT 163
GH + ++ SP+G +AS D + W++ + ++ +F + N +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEA----VISVKFSPNG 219
A + + +L+ + +VD +RP G+++A +S+ +S +G
Sbjct: 254 AATATGIKVFSLDPQYLVD---------DLRP------EFAGYSKAAEPHAVSLAWSADG 298
Query: 220 RSLASGSGDTTVRFW 234
++L +G D +R W
Sbjct: 299 QTLFAGYTDNVIRVW 313
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 150/392 (38%), Gaps = 92/392 (23%)
Query: 203 MPGHAEA-VISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC---EGHKHWVLCIAWS 258
+P H ++ + ++P G LAS GD +R W + + K EGH+ V +AWS
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 259 PDSKQLVSGCKNGVIHAWDSSTGK-QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGK 317
P L S + W + + + GH+ + +++W P A+ +
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-----NLLATCSR 125
Query: 318 DGAIRIWDVILS---QCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRAS--DGV 371
D ++ +W+V +CV VL SHT+ V + W S L+ SAS D T+K++R D V
Sbjct: 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185
Query: 372 MCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEK 431
C TLEGH V +LA P G++
Sbjct: 186 CCATLEGHESTVWSLAFD-------------------------------------PSGQR 208
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRI 491
L S SDD T+ +W + G++Q + C P
Sbjct: 209 LASCSDDRTVRIWR--------QYLPGNEQGVACSGSDPS-------------------- 240
Query: 492 GKFITTLRG-HVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQD---------LP 541
K I TL G H + +Y +AW + L + D ++V+ Q
Sbjct: 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300
Query: 542 GHGDEVYAVDWAP-DGEKVASGGKDKVLRLWQ 572
H +V V W P + +AS D + W+
Sbjct: 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 98/255 (38%), Gaps = 50/255 (19%)
Query: 101 RCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC-----EGTPYLF 155
C +++ GH V SV ++P+G LA+ S D +V W+V + ++C T +
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVK 154
Query: 156 YVNETEITKTLADVLPLDT--LNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISV 213
+V + LA DT L EE D V C +++ GH V S+
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWV--------------CCATLEGHESTVWSL 200
Query: 214 KFSPNGRSLASGSGDTTVRFWD-----------VTTQTPLFKC-----EGHKHWVLCIAW 257
F P+G+ LAS S D TVR W + P +KC H + IAW
Sbjct: 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 258 SPDSKQLVSGCKNGVIHAWDSSTGKQIGQPM--------RGHKQWITALSWEPFHLNHQC 309
+ L + C + I + QP + H Q + ++W P
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG--- 317
Query: 310 RRFASSGKDGAIRIW 324
AS DG + W
Sbjct: 318 -LLASCSDDGEVAFW 331
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 41/286 (14%)
Query: 106 MPGHAEA-VISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
+P H ++ + ++P G LAS GD +R W + + K L ++ + K
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRK 66
Query: 165 TLADVLP--LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSL 222
L + + + I + Q F+ C +++ GH V SV ++P+G L
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFE------CVTTLEGHENEVKSVAWAPSGNLL 120
Query: 223 ASGSGDTTVRFWDVTTQTPLFKC----EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDS 278
A+ S D +V W+V + ++C H V + W P + L S + + +
Sbjct: 121 ATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 279 STGKQI-GQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILS-------- 329
+ + GH+ + +L+++P +R AS D +RIW L
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSG-----QRLASCSDDRTVRIWRQYLPGNEQGVAC 234
Query: 330 -------QCVRVLTS-HTRSVTCIRWGG-SGLIYSASQDRTIKVWR 366
+C+ L+ H+R++ I W +G + +A D I+V++
Sbjct: 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 67/347 (19%)
Query: 246 EGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAW----DSSTGKQIGQPMRGHKQWITALSW 300
+GH WV IA +P ++ S ++ I W D + + +RGH +++ +
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-- 92
Query: 301 EPFHLNHQCRRFASSGK-DGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL-IYSASQ 358
+ +FA SG DG +R+WD+ R HT+ V + + I S S+
Sbjct: 93 ----VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 359 DRTIKVWRASDGVMCRTL--EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSK 416
D+TIK+W + GV T+ E H+ WV+ + F + +NP
Sbjct: 149 DKTIKLWN-TLGVCKYTVQDESHSEWVSCVR----------------FSPNSSNP----- 186
Query: 417 HALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIA 476
+VS D + +WN K + GH +N V SPDG + A
Sbjct: 187 --------------IIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCA 231
Query: 477 SASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK 534
S D LWD GK + TL G + A+ S +R + + ++K+W+++ K
Sbjct: 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF----SPNRYWLCAATGPSIKIWDLEGK 287
Query: 535 KIEQDL---------PGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
I +L + ++ W+ DG+ + +G D ++R+WQ
Sbjct: 288 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 145/351 (41%), Gaps = 69/351 (19%)
Query: 202 SMPGHAEAVISVKFSPNGRSLA-SGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVLCI 255
++ GH V + +P + S S D T+ W +T P GH H+V +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 256 AWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASS 315
S D + +SG +G + WD +TG + GH + + +++ + R+ S
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVSG 146
Query: 316 GKDGAIRIWDVILSQCVRVLT--SHTRSVTCIRWGGSG---LIYSASQDRTIKVWRASDG 370
+D I++W+ L C + SH+ V+C+R+ + +I S D+ +KVW ++
Sbjct: 147 SRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 371 VMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGE 430
+ GH ++NT+ +S P+G
Sbjct: 206 KLKTNHIGHTGYLNTVTVS-------------------------------------PDGS 228
Query: 431 KLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGR 490
SG D LW+ E K L + G +IN + FSP+ R A+ SIK+WD
Sbjct: 229 LCASGGKDGQAMLWDLN-EGKHLYTLDG-GDIINALCFSPN-RYWLCAATGPSIKIWDLE 285
Query: 491 IGKFI----------TTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
GK I T+ + +AWS+D + L +G D+ ++VW +
Sbjct: 286 -GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 32/278 (11%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
++ GH+ V V S +G+ SGS D T+R WD+TT GT +V T+
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--------GTTTRRFVGHTKDVL 132
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRS--L 222
++A + N + V + ++ V + T H+E V V+FSPN + +
Sbjct: 133 SVA----FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188
Query: 223 ASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGK 282
S D V+ W++ GH ++ + SPD SG K+G WD + GK
Sbjct: 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Query: 283 QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWD----VILSQCVR-VLTS 337
+ G I AL + P R + + +I+IWD +I+ + + V+++
Sbjct: 249 HLYTLDGGDI--INALCFSPN------RYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300
Query: 338 HTRS----VTCIRWGGSG-LIYSASQDRTIKVWRASDG 370
+++ T + W G +++ D ++VW+ + G
Sbjct: 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 60/345 (17%)
Query: 245 CEGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEP 302
EGH WV +A S L+ S ++ + +W + ++ G P+R K
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------H 64
Query: 303 FHLNHQCRRFA------SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG-SGLIYS 355
H+ C A S+ D +R+WDV + + H V + + I S
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 356 ASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESS 415
S+D+TIKVW G TL GH WV+ +RV P E +
Sbjct: 125 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQ--------VRVV-------------PNEKA 162
Query: 416 KHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRII 475
+ ++S +D + WN + + A GH IN + SPDG +I
Sbjct: 163 DD----------DSVTIISAGNDKXVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLI 211
Query: 476 ASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKK 535
ASA D I LW+ K TL + V+ +A+S + L + +A + +KV+++ +
Sbjct: 212 ASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269
Query: 536 IEQDL----PGHGD--EVYAVD--WAPDGEKVASGGKDKVLRLWQ 572
+ DL G+ E +AV W+ DG+ + +G D V+R+WQ
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 98/246 (39%), Gaps = 8/246 (3%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S GH+ V + +G S S D T+R WDV T + GHK V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKA 119
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH-LNHQCRRFASSGKDGA 320
++SG ++ I W + Q + GH W++ + P + S+G D
Sbjct: 120 SXIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGH 379
++ W++ Q H ++ + G LI SA +D I +W + TL
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 380 AHWVNTLALSTDYLMRVEATSTG--GFKYDPANPEESSKHALAKY-QAQCPEGEKLVSGS 436
V +LA S + AT+TG F DP + + A Y +A P L +
Sbjct: 238 DE-VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 437 DDFTLF 442
D TLF
Sbjct: 297 DGQTLF 302
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 72/355 (20%)
Query: 202 SMPGHAEAVISVKFS---PNGRSLASGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVL 253
++ GH V S+ S PN L S S D T+ W +T P+ +GH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 254 CIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFA 313
+ D +S + + WD +TG+ Q GHK + ++ ++ +
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETY-QRFVGHKSDVXSVD-----IDKKASXII 123
Query: 314 SSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRW-------GGSGLIYSASQDRTIKVWR 366
S +D I++W I QC+ L H V+ +R S I SA D+ +K W
Sbjct: 124 SGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ + GH +NTL S
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS------------------------------------- 205
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P+G + S D + LWN KK+ ++ ++ + + FSP+ +A+A+ IK+
Sbjct: 206 PDGTLIASAGKDGEIXLWNLA-AKKAXYTLSAQDEVFS-LAFSPNRYWLAAATA-TGIKV 262
Query: 487 WDGRIGKFITTLR----GHVQA----VYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
+ + LR G+ +A +AWS+D + L +G D+ ++VW + T
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 80/240 (33%), Gaps = 68/240 (28%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S GH+ V + +G S S D T+R WDV T G Y +V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--------GETYQRFV------- 104
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLAS 224
GH V SV + S
Sbjct: 105 ----------------------------------------GHKSDVXSVDIDKKASXIIS 124
Query: 225 GSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSP------DSKQLVSGCKNGVIHAWDS 278
GS D T++ W + Q L GH WV + P DS ++S + + AW+
Sbjct: 125 GSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Query: 279 STGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSH 338
+ QI GH I L+ P AS+GKDG I +W++ + L++
Sbjct: 184 NQ-FQIEADFIGHNSNINTLTASP-----DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYV----NETEIT 163
GH + ++ SP+G +AS D + W++ + + +F + N +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLA 253
Query: 164 KTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEA----VISVKFSPNG 219
A + + +L+ + +VD +RP G+++A +S+ +S +G
Sbjct: 254 AATATGIKVFSLDPQYLVD---------DLRP------EFAGYSKAAEPHAVSLAWSADG 298
Query: 220 RSLASGSGDTTVRFWDVTT 238
++L +G D +R W V T
Sbjct: 299 QTLFAGYTDNVIRVWQVXT 317
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 67/347 (19%)
Query: 246 EGHKHWVLCIAWSPDSKQLV-SGCKNGVIHAW----DSSTGKQIGQPMRGHKQWITALSW 300
+GH WV IA +P ++ S ++ I W D + + +RGH +++ +
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-- 69
Query: 301 EPFHLNHQCRRFASSGK-DGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL-IYSASQ 358
+ +FA SG DG +R+WD+ R HT+ V + + I S S+
Sbjct: 70 ----VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 359 DRTIKVWRASDGVMCRTL--EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSK 416
D+TIK+W + GV T+ E H+ WV+ + F + +NP
Sbjct: 126 DKTIKLWN-TLGVCKYTVQDESHSEWVSCVR----------------FSPNSSNP----- 163
Query: 417 HALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIA 476
+VS D + +WN K + GH +N V SPDG + A
Sbjct: 164 --------------IIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCA 208
Query: 477 SASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK 534
S D LWD GK + TL G + A+ S +R + + ++K+W+++ K
Sbjct: 209 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF----SPNRYWLCAATGPSIKIWDLEGK 264
Query: 535 KIEQDL---------PGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
I +L + ++ W+ DG+ + +G D ++R+WQ
Sbjct: 265 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 145/351 (41%), Gaps = 69/351 (19%)
Query: 202 SMPGHAEAVISVKFSPNGRSLA-SGSGDTTVRFWDVTTQ-----TPLFKCEGHKHWVLCI 255
++ GH V + +P + S S D T+ W +T P GH H+V +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 256 AWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASS 315
S D + +SG +G + WD +TG + GH + + +++ + R+ S
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVSG 123
Query: 316 GKDGAIRIWDVILSQCVRVLT--SHTRSVTCIRWGGSG---LIYSASQDRTIKVWRASDG 370
+D I++W+ L C + SH+ V+C+R+ + +I S D+ +KVW ++
Sbjct: 124 SRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 371 VMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGE 430
+ GH ++NT+ +S P+G
Sbjct: 183 KLKTNHIGHTGYLNTVTVS-------------------------------------PDGS 205
Query: 431 KLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGR 490
SG D LW+ E K L + G +IN + FSP+ R A+ SIK+WD
Sbjct: 206 LCASGGKDGQAMLWDLN-EGKHLYTLDG-GDIINALCFSPN-RYWLCAATGPSIKIWDLE 262
Query: 491 IGKFI----------TTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
GK I T+ + +AWS+D + L +G D+ ++VW +
Sbjct: 263 -GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 32/278 (11%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
++ GH+ V V S +G+ SGS D T+R WD+TT GT +V T+
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--------GTTTRRFVGHTKDVL 109
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRS--L 222
++A + N + V + ++ V + T H+E V V+FSPN + +
Sbjct: 110 SVA----FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 165
Query: 223 ASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGK 282
S D V+ W++ GH ++ + SPD SG K+G WD + GK
Sbjct: 166 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Query: 283 QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWD----VILSQCVR-VLTS 337
+ G I AL + P R + + +I+IWD +I+ + + V+++
Sbjct: 226 HLYTLDGGDI--INALCFSPN------RYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 277
Query: 338 HTRS----VTCIRWGGSG-LIYSASQDRTIKVWRASDG 370
+++ T + W G +++ D ++VW+ + G
Sbjct: 278 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 28/266 (10%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPY----LFYVNET 160
S+ GH V+SV S AS S D +R WD+ + + P L + ++
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 161 EITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
+ T V ++ E + S+ + ++S+ +SP+G+
Sbjct: 135 QYLATGTHVGKVNIFGVES-----------------GKKEYSLDTRGKFILSIAYSPDGK 177
Query: 221 SLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSST 280
LASG+ D + +D+ T L EGH + + +SPDS+ LV+ +G I +D
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 281 GKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTR 340
G + GH W+ +++ P F SS D ++++WDV CV H
Sbjct: 238 ANLAG-TLSGHASWVLNVAFCP-----DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291
Query: 341 SVTCIRWGGSG-LIYSASQDRTIKVW 365
V +++ G+G I S D+ I ++
Sbjct: 292 QVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 6/222 (2%)
Query: 355 SASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGG---FKYDPANP 411
S+S D I++W +G ++++ TLA S D T G F +
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156
Query: 412 EES--SKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFS 469
E S ++ A P+G+ L SG+ D + +++ K L + GH I + FS
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFS 215
Query: 470 PDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
PD +++ +AS D IK++D + TL GH V VA+ D VS S+D ++KVW
Sbjct: 216 PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
Query: 530 NMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
++ T+ H D+V+ V + +G K+ S G D+ + ++
Sbjct: 276 DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
S+ GH V+SV S AS S D +R WD+ + + +A+SPDS
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 262 KQLVSGCKNGVIHAWDSSTGK-QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGA 320
+ L +G G ++ + +GK + RG ++I ++++ P + AS DG
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSP-----DGKYLASGAIDGI 187
Query: 321 IRIWDVILSQCVRVLTSHTRSVTCIRWG-GSGLIYSASQDRTIKVWRASDGVMCRTLEGH 379
I I+D+ + + L H + + + S L+ +AS D IK++ + TL GH
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 380 AHWVNTLALSTD 391
A WV +A D
Sbjct: 248 ASWVLNVAFCPD 259
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 89/179 (49%), Gaps = 1/179 (0%)
Query: 394 MRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSL 453
+ + T+ G + + + ++A + E +V+GS D + +W E+ L
Sbjct: 13 LYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL 72
Query: 454 A-RMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSS 512
+ GHQ + V+ S I AS+S D I+LWD GK I ++ + +A+S
Sbjct: 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Query: 513 DSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
DS+ L +G+ + ++ +++ K E L G + ++ ++PDG+ +ASG D ++ ++
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPY----LFYVNET 160
S+ + ++S+ +SP+G+ LASG+ D + +D+ T L EG L + ++
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 161 EITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGR 220
++ T +D + ++ D+ + A ++ GHA V++V F P+
Sbjct: 219 QLLVTASDDGYI------KIYDVQHANLA-----------GTLSGHASWVLNVAFCPDDT 261
Query: 221 SLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWD 277
S S D +V+ WDV T+T + H+ V + ++ + ++VS + IH +D
Sbjct: 262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 120/283 (42%), Gaps = 48/283 (16%)
Query: 210 VISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCK 269
V SVK+S +G L+ G G+ V +DV +QT L GH+ V C++W + L SG +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR 194
Query: 270 NGVIHAWDSSTGK-QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVIL 328
+G IH D QIG ++GH + L+W L + AS G D ++IWD
Sbjct: 195 SGAIHHHDVRIANHQIGT-LQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 329 SQCVRVLTSHTRSVTCIRWG--GSGLIYS--ASQDRTIKVWRASDGVMCRTLEGHAHWVN 384
S T+H +V + W S L+ + + D+ I W A+ G T++ + V
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VT 307
Query: 385 TLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLW 444
+L S E ST GF + + S L K Q P
Sbjct: 308 SLIWSP---HSKEIMSTHGFPDNNLSIWSYSSSGLTK-QVDIP----------------- 346
Query: 445 NPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
H + SPDGRI+++A+ D+++K W
Sbjct: 347 -------------AHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 31/267 (11%)
Query: 113 VISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLADVLPL 172
V SVK+S +G L+ G G+ V +DV +QT L G + L
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH------------QARVGCLSW 184
Query: 173 DTLNTEEVVDIVYQKQAVFQ--VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTT 230
+ V+ + A+ VR ++ GH+ V + + +G LASG D
Sbjct: 185 N----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240
Query: 231 VRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS---GCKNGVIHAWDSSTGKQIGQP 287
V+ WD + P F H V +AW P L++ G + IH W+++TG ++
Sbjct: 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300
Query: 288 MRGHKQWITALSWEPFHLNHQCRRFASSG-KDGAIRIWDVI---LSQCVRVLTSHTRSVT 343
G + +T+L W P H ++ G D + IW L++ V + TR +
Sbjct: 301 DAGSQ--VTSLIWSP----HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354
Query: 344 CIRWGGSGLIYSASQDRTIKVWRASDG 370
++ +A+ D +K WR DG
Sbjct: 355 SALSPDGRILSTAASDENLKFWRVYDG 381
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 118/311 (37%), Gaps = 59/311 (18%)
Query: 273 IHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCV 332
++ W++ +G ++ ++ W +H + +G + I+DV +
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKW-----SHDGSFLSVGLGNGLVDIYDVESQTKL 169
Query: 333 RVLTSHTRSVTCIRWG----GSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLAL 388
R + H V C+ W SG A +++ G TL+GH+ V LA
Sbjct: 170 RTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIG----TLQGHSSEVCGLAW 225
Query: 389 STDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEK 448
+D G +L SG +D + +W+
Sbjct: 226 RSD-------------------------------------GLQLASGGNDNVVQIWDARS 248
Query: 449 EKKSLARMTGHQQLINCVEFSP-DGRIIASA--SFDKSIKLWDGRIGKFITTLRGHVQAV 505
+ T H + V + P ++A+ + DK I W+ G + T+ Q
Sbjct: 249 SIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 506 YMVAWSSDSRLLVS--GSADSTLKVWNMKTKKIEQ--DLPGHGDEVYAVDWAPDGEKVAS 561
++ WS S+ ++S G D+ L +W+ + + + D+P H V +PDG +++
Sbjct: 308 SLI-WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366
Query: 562 GGKDKVLRLWQ 572
D+ L+ W+
Sbjct: 367 AASDENLKFWR 377
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 109/291 (37%), Gaps = 58/291 (19%)
Query: 251 WVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCR 310
+V + WS D L G NG++ +D + ++ + M GH+ + LSW R
Sbjct: 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL-RTMAGHQARVGCLSWN--------R 186
Query: 311 RFASSG-KDGAIRIWDV-ILSQCVRVLTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWRA 367
SSG + GAI DV I + + L H+ V + W GL + S D +++W A
Sbjct: 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
Query: 368 SDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCP 427
+ T H +A K A CP
Sbjct: 247 RSSIPKFTKTNH-------------------------------------NAAVKAVAWCP 269
Query: 428 EGEKLVS---GSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGR-IIASASF-DK 482
L++ G+ D + WN + G Q + + +SP + I+++ F D
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDN 327
Query: 483 SIKLWDGRIGKFI--TTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
++ +W + H V A S D R+L + ++D LK W +
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 85/239 (35%), Gaps = 71/239 (29%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLF 155
VR ++ GH+ V + + +G LASG D V+ WD + P F
Sbjct: 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF--------- 253
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKF 215
TKT H AV +V +
Sbjct: 254 -------TKT---------------------------------------NHNAAVKAVAW 267
Query: 216 SP-NGRSLASGSG--DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS--GCKN 270
P LA+G G D + FW+ T + + V + WSP SK+++S G +
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPD 326
Query: 271 GVIHAWD-SSTG--KQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
+ W SS+G KQ+ P + +ALS + R +++ D ++ W V
Sbjct: 327 NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD-------GRILSTAASDENLKFWRV 378
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 353 IYSASQDRTIKVWR-ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANP 411
+ S S D T+K+W ++ + +T EGH H+V +A NP
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF---------------------NP 150
Query: 412 EESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP- 470
++ S A SG D T+ +W+ + + TG ++ +N V++ P
Sbjct: 151 KDPSTFA---------------SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 471 -DGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
D + +AS D +IK+WD + + TL GH+ V + +++SGS D TLK+W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 530 NMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASG 562
N T K+E+ L + + + P G K +ASG
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 389 STDYLMRVEATSTGGFKYD-PANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPE 447
S D+ +RV +TG D A+P+ + A P ++SGSDD T+ LWN E
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPD------YIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 448 KEKKSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWD-GRIGKFITTLRGHVQAV 505
GH+ + CV F+P D AS D+++K+W G+ T G + V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 506 YMVAWSS--DSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGG 563
V + D +++ S D T+K+W+ +TK L GH V + P + SG
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 564 KDKVLRLWQN 573
+D L++W +
Sbjct: 248 EDGTLKIWNS 257
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC-EGHKHWVLCIAWSP-DSK 262
H + + S+ P + SGS D TV+ W+ L + EGH+H+V+C+A++P D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 263 QLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIR 322
SGC + + W G ++ + + + P ++ D I+
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL---PDKPYMITASDDLTIK 211
Query: 323 IWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTIKVWRASDGVMCRTL 376
IWD CV L H +V+ + + +I S S+D T+K+W +S + +TL
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 102/279 (36%), Gaps = 49/279 (17%)
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVI 273
KF + GS D +R ++ T + E H ++ IA P ++SG + +
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 274 HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVR 333
W+ + Q GH+ ++ +++ P FAS D +++W + S
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 334 VLTS-HTRSVTCIRW---GGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALS 389
LT+ R V + + + +AS D TIK+W TLEGH
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--------- 228
Query: 390 TDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKE 449
S + A + P ++SGS+D TL +WN
Sbjct: 229 -------------------------SNVSFAVFHPTLP---IIISGSEDGTLKIWNSSTY 260
Query: 450 KKSLARMTGHQQLINCVEFSPDGR--IIASASFDKSIKL 486
K G ++ C+ P GR IAS FD +
Sbjct: 261 KVEKTLNVGLERSW-CIATHPTGRKNYIASG-FDNGFTV 297
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 105 SMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKC-----EGTPYLFYVN 158
+ GH V+ V F+P S ASG D TV+ W + TP F G Y+ Y
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY- 193
Query: 159 ETEITKTLADVLPLDTLNTEEVVDIV-YQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSP 217
L D + T + + + I YQ ++ C +++ GH V F P
Sbjct: 194 ------PLPDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHP 238
Query: 218 NGRSLASGSGDTTVRFWDVTTQTPLFKCEG------HKHWVLCIAWSPDSKQ--LVSGCK 269
+ SGS D T++ W+ +T +K E + W CIA P ++ + SG
Sbjct: 239 TLPIIISGSEDGTLKIWNSST----YKVEKTLNVGLERSW--CIATHPTGRKNYIASGFD 292
Query: 270 NG 271
NG
Sbjct: 293 NG 294
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 475 IASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK 534
I S D I++++ G+ + H + +A ++SGS D T+K+WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 535 -KIEQDLPGHGDEVYAVDWAP-DGEKVASGGKDKVLRLW 571
+EQ GH V V + P D ASG D+ +++W
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 47/110 (42%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA 522
+ ++F P + + + ++LW+ + +++ V + + ++ GS
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 523 DSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
D ++V+N T + D H D + ++ P V SG D ++LW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGT 151
C +++ GH V F P + SGS D T++ W+ +T +K E T
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----YKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 353 IYSASQDRTIKVWR-ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANP 411
+ S S D T+K+W ++ + +T EGH H+V +A NP
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF---------------------NP 150
Query: 412 EESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP- 470
++ S A SG D T+ +W+ + + TG ++ +N V++ P
Sbjct: 151 KDPSTFA---------------SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 471 -DGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
D + +AS D +IK+WD + + TL GH+ V + +++SGS D TLK+W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 530 NMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASG 562
N T K+E+ L + + + P G K +ASG
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 389 STDYLMRVEATSTGGFKYD-PANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPE 447
S D+ +RV +TG D A+P+ + A P ++SGSDD T+ LWN E
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPD------YIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 448 KEKKSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWD-GRIGKFITTLRGHVQAV 505
GH+ + CV F+P D AS D+++K+W G+ T G + V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 506 YMVAWSS--DSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGG 563
V + D +++ S D T+K+W+ +TK L GH V + P + SG
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 564 KDKVLRLWQN 573
+D L++W +
Sbjct: 248 EDGTLKIWNS 257
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC-EGHKHWVLCIAWSP-DSK 262
H + + S+ P + SGS D TV+ W+ L + EGH+H+V+C+A++P D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 263 QLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIR 322
SGC + + W G ++ + + + P ++ D I+
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL---PDKPYMITASDDLTIK 211
Query: 323 IWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTIKVWRASDGVMCRTL 376
IWD CV L H +V+ + + +I S S+D T+K+W +S + +TL
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 102/279 (36%), Gaps = 49/279 (17%)
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVI 273
KF + GS D +R ++ T + E H ++ IA P ++SG + +
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 274 HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVR 333
W+ + Q GH+ ++ +++ P FAS D +++W + S
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 334 VLTS-HTRSVTCIRW---GGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALS 389
LT+ R V + + + +AS D TIK+W TLEGH
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--------- 228
Query: 390 TDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKE 449
S + A + P ++SGS+D TL +WN
Sbjct: 229 -------------------------SNVSFAVFHPTLP---IIISGSEDGTLKIWNSSTY 260
Query: 450 KKSLARMTGHQQLINCVEFSPDGR--IIASASFDKSIKL 486
K G ++ C+ P GR IAS FD +
Sbjct: 261 KVEKTLNVGLERSW-CIATHPTGRKNYIASG-FDNGFTV 297
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 105 SMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKC-----EGTPYLFYVN 158
+ GH V+ V F+P S ASG D TV+ W + TP F G Y+ Y
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY- 193
Query: 159 ETEITKTLADVLPLDTLNTEEVVDIV-YQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSP 217
L D + T + + + I YQ ++ C +++ GH V F P
Sbjct: 194 ------PLPDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHP 238
Query: 218 NGRSLASGSGDTTVRFWDVTTQTPLFKCEG------HKHWVLCIAWSPDSKQ--LVSGCK 269
+ SGS D T++ W+ +T +K E + W CIA P ++ + SG
Sbjct: 239 TLPIIISGSEDGTLKIWNSST----YKVEKTLNVGLERSW--CIATHPTGRKNYIASGFD 292
Query: 270 NG 271
NG
Sbjct: 293 NG 294
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 475 IASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK 534
I S D I++++ G+ + H + +A ++SGS D T+K+WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 535 -KIEQDLPGHGDEVYAVDWAP-DGEKVASGGKDKVLRLW 571
+EQ GH V V + P D ASG D+ +++W
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 47/110 (42%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA 522
+ ++F P + + + ++LW+ + +++ V + + ++ GS
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 523 DSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
D ++V+N T + D H D + ++ P V SG D ++LW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGT 151
C +++ GH V F P + SGS D T++ W+ +T +K E T
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----YKVEKT 265
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 114/292 (39%), Gaps = 54/292 (18%)
Query: 204 PGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQ 263
PG E + SV + G LA G+ V+ WDV Q L H V ++W +S
Sbjct: 146 PG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 201
Query: 264 LVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRI 323
L SG ++G IH D + + GH Q + L W P R AS G D + +
Sbjct: 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNV 256
Query: 324 WDVILSQC----VRVLTSHTRSVTCIRWG--GSGLIYS--ASQDRTIKVWRASDGVMCRT 375
W + ++ T H +V + W S ++ + + DR I++W G
Sbjct: 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316
Query: 376 LEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSG 435
++ H+ + L + P E S H A+ Q
Sbjct: 317 VDAHSQVCSIL-------------------WSPHYKELISGHGFAQNQ------------ 345
Query: 436 SDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
L +W K +A + GH + + SPDG +ASA+ D++++LW
Sbjct: 346 -----LVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 118/273 (43%), Gaps = 22/273 (8%)
Query: 318 DGAIRIWDVILSQCVRVLT-----SHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVM 372
D ++ +W +++L + SV I+ G + ++S + +++W
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQQQKR 181
Query: 373 CRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC-----P 427
R + H+ V +L+ ++ Y++ + S +D E Q C P
Sbjct: 182 LRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKS---LARMTGHQQLINCVEFSP-DGRIIASA--SFD 481
+G L SG +D + +W + L T HQ + V + P ++A+ + D
Sbjct: 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVWNMKTKKIEQD 539
+ I++W+ G ++ + H Q V + WS + L+SG A + L +W T +
Sbjct: 301 RHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 359
Query: 540 LPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH V ++ +PDG VAS D+ LRLW+
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 106/273 (38%), Gaps = 39/273 (14%)
Query: 107 PGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL 166
PG E + SV + G LA G+ V+ WDV Q L +T
Sbjct: 146 PG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMTSHS 189
Query: 167 ADVLPLD----TLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSL 222
A V L L++ ++ VR +++ GH++ V ++++P+GR L
Sbjct: 190 ARVGSLSWNSYILSSGSRSGHIHH----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 245
Query: 223 ASGSGDTTVRFWDVTTQ----TPLFKCEGHKHWVLCIAWSPDSKQLVS---GCKNGVIHA 275
ASG D V W PL H+ V +AW P +++ G + I
Sbjct: 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305
Query: 276 WDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG-KDGAIRIWDVILSQCVRV 334
W+ +G + + H Q + ++ W P H + G + IW V
Sbjct: 306 WNVCSGACL-SAVDAHSQ-VCSILWSP----HYKELISGHGFAQNQLVIWKYPTMAKVAE 359
Query: 335 LTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWR 366
L HT V + G + SA+ D T+++WR
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 49/197 (24%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG--TPY 153
VR +++ GH++ V ++++P+GR LASG D V W P EG P
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------PSAPGEGGWVPL 269
Query: 154 LFYVNETEITKTLA------DVLP--------------------LDTLNTE-EVVDIVY- 185
+ K +A +VL L ++ +V I++
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329
Query: 186 -------------QKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
Q Q V P + + GH V+S+ SP+G ++AS + D T+R
Sbjct: 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389
Query: 233 FWDVTTQTPLFKCEGHK 249
W P + E K
Sbjct: 390 LWRCFELDPARRREREK 406
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 89 QKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC 148
Q Q V P + + GH V+S+ SP+G ++AS + D T+R W P +
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402
Query: 149 E 149
E
Sbjct: 403 E 403
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 114/292 (39%), Gaps = 54/292 (18%)
Query: 204 PGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQ 263
PG E + SV + G LA G+ V+ WDV Q L H V ++W +S
Sbjct: 157 PG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 212
Query: 264 LVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRI 323
L SG ++G IH D + + GH Q + L W P R AS G D + +
Sbjct: 213 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNV 267
Query: 324 WDVILSQC----VRVLTSHTRSVTCIRWG--GSGLIYS--ASQDRTIKVWRASDGVMCRT 375
W + ++ T H +V + W S ++ + + DR I++W G
Sbjct: 268 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 327
Query: 376 LEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSG 435
++ H+ + L + P E S H A+ Q
Sbjct: 328 VDAHSQVCSIL-------------------WSPHYKELISGHGFAQNQ------------ 356
Query: 436 SDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
L +W K +A + GH + + SPDG +ASA+ D++++LW
Sbjct: 357 -----LVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 118/273 (43%), Gaps = 22/273 (8%)
Query: 318 DGAIRIWDVILSQCVRVLT-----SHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVM 372
D ++ +W +++L + SV I+ G + ++S + +++W
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQQQKR 192
Query: 373 CRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC-----P 427
R + H+ V +L+ ++ Y++ + S +D E Q C P
Sbjct: 193 LRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 251
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKS---LARMTGHQQLINCVEFSP-DGRIIASA--SFD 481
+G L SG +D + +W + L T HQ + V + P ++A+ + D
Sbjct: 252 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 311
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVWNMKTKKIEQD 539
+ I++W+ G ++ + H Q V + WS + L+SG A + L +W T +
Sbjct: 312 RHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 370
Query: 540 LPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH V ++ +PDG VAS D+ LRLW+
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 106/273 (38%), Gaps = 39/273 (14%)
Query: 107 PGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL 166
PG E + SV + G LA G+ V+ WDV Q L +T
Sbjct: 157 PG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMTSHS 200
Query: 167 ADVLPLD----TLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSL 222
A V L L++ ++ VR +++ GH++ V ++++P+GR L
Sbjct: 201 ARVGSLSWNSYILSSGSRSGHIHH----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 256
Query: 223 ASGSGDTTVRFWDVTTQ----TPLFKCEGHKHWVLCIAWSPDSKQLVS---GCKNGVIHA 275
ASG D V W PL H+ V +AW P +++ G + I
Sbjct: 257 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 316
Query: 276 WDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG-KDGAIRIWDVILSQCVRV 334
W+ +G + + H Q + ++ W P H + G + IW V
Sbjct: 317 WNVCSGACL-SAVDAHSQ-VCSILWSP----HYKELISGHGFAQNQLVIWKYPTMAKVAE 370
Query: 335 LTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWR 366
L HT V + G + SA+ D T+++WR
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 49/197 (24%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG--TPY 153
VR +++ GH++ V ++++P+GR LASG D V W P EG P
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------PSAPGEGGWVPL 280
Query: 154 LFYVNETEITKTLA------DVLP--------------------LDTLNTE-EVVDIVY- 185
+ K +A +VL L ++ +V I++
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 340
Query: 186 -------------QKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVR 232
Q Q V P + + GH V+S+ SP+G ++AS + D T+R
Sbjct: 341 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 400
Query: 233 FWDVTTQTPLFKCEGHK 249
W P + E K
Sbjct: 401 LWRCFELDPARRREREK 417
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 89 QKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC 148
Q Q V P + + GH V+S+ SP+G ++AS + D T+R W P +
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 413
Query: 149 E 149
E
Sbjct: 414 E 414
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 114/292 (39%), Gaps = 54/292 (18%)
Query: 204 PGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQ 263
PG E + SV + G LA G+ V+ WDV Q L H V ++W +S
Sbjct: 66 PG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121
Query: 264 LVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRI 323
L SG ++G IH D + + GH Q + L W P R AS G D + +
Sbjct: 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNV 176
Query: 324 WDVILSQC----VRVLTSHTRSVTCIRWG--GSGLIYS--ASQDRTIKVWRASDGVMCRT 375
W + ++ T H +V + W S ++ + + DR I++W G
Sbjct: 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236
Query: 376 LEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSG 435
++ H+ + L + P E S H A+ Q
Sbjct: 237 VDAHSQVCSIL-------------------WSPHYKELISGHGFAQNQ------------ 265
Query: 436 SDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
L +W K +A + GH + + SPDG +ASA+ D++++LW
Sbjct: 266 -----LVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 118/273 (43%), Gaps = 22/273 (8%)
Query: 318 DGAIRIWDVILSQCVRVLT-----SHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVM 372
D ++ +W +++L + SV I+ G + ++S + +++W
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQQQKR 101
Query: 373 CRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC-----P 427
R + H+ V +L+ ++ Y++ + S +D E Q C P
Sbjct: 102 LRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKS---LARMTGHQQLINCVEFSP-DGRIIASA--SFD 481
+G L SG +D + +W + L T HQ + V + P ++A+ + D
Sbjct: 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
Query: 482 KSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGS--ADSTLKVWNMKTKKIEQD 539
+ I++W+ G ++ + H Q V + WS + L+SG A + L +W T +
Sbjct: 221 RHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 279
Query: 540 LPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
L GH V ++ +PDG VAS D+ LRLW+
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 106/273 (38%), Gaps = 39/273 (14%)
Query: 107 PGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL 166
PG E + SV + G LA G+ V+ WDV Q L +T
Sbjct: 66 PG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMTSHS 109
Query: 167 ADVLPLD----TLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSL 222
A V L L++ ++ VR +++ GH++ V ++++P+GR L
Sbjct: 110 ARVGSLSWNSYILSSGSRSGHIHHHD----VRVAEHHVATLSGHSQEVCGLRWAPDGRHL 165
Query: 223 ASGSGDTTVRFWDVTTQ----TPLFKCEGHKHWVLCIAWSPDSKQLVS---GCKNGVIHA 275
ASG D V W PL H+ V +AW P +++ G + I
Sbjct: 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225
Query: 276 WDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG-KDGAIRIWDVILSQCVRV 334
W+ +G + + H Q + ++ W P H + G + IW V
Sbjct: 226 WNVCSGACL-SAVDAHSQ-VCSILWSP----HYKELISGHGFAQNQLVIWKYPTMAKVAE 279
Query: 335 LTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWR 366
L HT V + G + SA+ D T+++WR
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 59/232 (25%)
Query: 96 VRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLF 155
VR +++ GH++ V ++++P+GR LASG D V W P EG
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------PSAPGEG----- 184
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKF 215
+PL T + G +AV +
Sbjct: 185 ------------GWVPLQTFTQHQ-------------------------GAVKAVAWCPW 207
Query: 216 SPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSG---CKNGV 272
N + G+ D +R W+V + L + H V I WSP K+L+SG +N +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQL 266
Query: 273 IHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIW 324
+ W T ++ + ++GH + +L+ P AS+ D +R+W
Sbjct: 267 V-IWKYPTMAKVAE-LKGHTSRVLSLTMSP-----DGATVASAAADETLRLW 311
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 89 QKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFW 137
Q Q V P + + GH V+S+ SP+G ++AS + D T+R W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 23/239 (9%)
Query: 354 YSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEE 413
YS +Q RT + +D V CRTL+GH+ V +L + + V A+ G + N
Sbjct: 40 YSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDG--RLIVWNALT 97
Query: 414 SSK-HAL---AKYQAQC---PEGEKLVSGSDDFTLFLWNPEKEKKSLARM------TGHQ 460
S K HA+ + +C P G+ + G D ++N + M TGH+
Sbjct: 98 SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK 157
Query: 461 QLINCVEFSPDGRI-IASASFDKSIKLWDGRIGKFITTL-----RGHVQAVYMVAWSS-D 513
+ ++ PD + + S D++ LWD G+ I+ GH V ++ +S +
Sbjct: 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217
Query: 514 SRLLVSGSADSTLKVWNMK-TKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
+ + +SGS D+T+++W+++ T + + GH ++ +V + PDG++ +G D RL+
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 146/372 (39%), Gaps = 72/372 (19%)
Query: 227 GDTTVRFWDVTTQTPLFKC---EGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQ 283
G T V F T L C +GH V + W+P+ +VS ++G + W++ T ++
Sbjct: 45 GRTAVSF----NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 284 IGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQC--------VRVL 335
++ H W+ ++ P N Q A G D A I++ + SQ RVL
Sbjct: 101 T-HAIKLHCPWVMECAFAP---NGQ--SVACGGLDSACSIFN-LSSQADRDGNMPVSRVL 153
Query: 336 TSHTRSVTCIRW--GGSGLIYSASQDRTIKVWRASDGVMCRTLEGH---AHWVNTLALST 390
T H + ++ + + S D+T +W + G H + L+LS
Sbjct: 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213
Query: 391 DYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEK 450
+ L +SGS D T+ LW+
Sbjct: 214 NSL----------------------------------NANMFISGSCDTTVRLWDLRITS 239
Query: 451 KSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLR-------GHVQ 503
+++ GH+ IN V+F PDG+ + S D + +L+D R G + +
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 504 AVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDL----PGHGDEVYAVDWAPDGEKV 559
V VA+S RLL +G ++ VW+ ++ +L H + + + DG +
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 560 ASGGKDKVLRLW 571
+G DK L++W
Sbjct: 360 CTGSWDKNLKIW 371
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/356 (20%), Positives = 138/356 (38%), Gaps = 67/356 (18%)
Query: 199 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWS 258
C ++ GH+ V S+ ++P + S S D + W+ T + H WV+ A++
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 259 PDSKQLVSGCKNGVIHAWDSST------GKQIGQPMRGHKQWITALSWEPFHLNHQCRRF 312
P+ + + G + ++ S+ + + + GHK + ++ + P + + R
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP---DQETRLI 174
Query: 313 ASSGKDGAIRIWDVILSQCVRVLTS-----HTRSVTCIRWG--GSGLIYSASQDRTIKVW 365
SG D +WDV Q + + S HT V + + + S S D T+++W
Sbjct: 175 TGSG-DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 366 --RASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQ 423
R + + RT GH +N++
Sbjct: 234 DLRITSRAV-RTYHGHEGDINSVKFF---------------------------------- 258
Query: 424 AQCPEGEKLVSGSDDFTLFLWNP------EKEKKSLARMTGHQQLINCVEFSPDGRIIAS 477
P+G++ +GSDD T L++ + + R ++ V FS GR++ +
Sbjct: 259 ---PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315
Query: 478 ASFDKSIKLWDGRIGKFITTL----RGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
+ +WD + + + L H + + SSD L +GS D LK+W
Sbjct: 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 98 PVTRCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKCEGTPYLFY 156
PV+R + GH S ++ P+ + L +GSGD T WDVTT G +
Sbjct: 148 PVSRV---LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--------GQRISIF 196
Query: 157 VNETEITKTLADVLPL--DTLNTEEVVDIVYQKQA-VFQVRPVTRCTSSMPGHAEAVISV 213
+E T ADVL L ++LN + ++ +R +R + GH + SV
Sbjct: 197 GSEFPSGHT-ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTT--QTPLFKCEGHKH-----WVLCIAWSPDSKQLVS 266
KF P+G+ +GS D T R +D+ T Q ++ E ++ V +A+S + L +
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315
Query: 267 GCKNGVIHAWDSSTGKQI---GQPMRGHKQWITAL 298
G NG + WD+ + + G H+ I+ L
Sbjct: 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 70 ADVLPL--DTLNTEEVVDIVYQKQA-VFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLA 126
ADVL L ++LN + ++ +R +R + GH + SVKF P+G+
Sbjct: 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265
Query: 127 SGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLA---------------DVLP 171
+GS D T R +D+ T L P NE I ++A D
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDR-NDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324
Query: 172 LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTV 231
DTL E V+++ + + H + + S +G +L +GS D +
Sbjct: 325 WDTLLAEMVLNLGTLQNS----------------HEGRISCLGLSSDGSALCTGSWDKNL 368
Query: 232 RFW 234
+ W
Sbjct: 369 KIW 371
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 353 IYSASQDRTIKVWR-ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANP 411
+ S S D T+K+W ++ + +T EGH H+V +A NP
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF---------------------NP 150
Query: 412 EESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP- 470
++ S A SG D T+ +W+ + + TG ++ +N V++ P
Sbjct: 151 KDPSTFA---------------SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 471 -DGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
D + +AS D +IK+WD + + TL GH+ V + +++SGS D TLK+W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 530 NMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASG 562
N T K+E+ L + + + P G K +ASG
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Query: 389 STDYLMRVEATSTGGFKYD-PANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPE 447
S D+ +RV +TG D A+P+ + A P ++SGSDD T+ LWN E
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPD------YIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 448 KEKKSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWD-GRIGKFITTLRGHVQAV 505
GH+ + CV F+P D AS D+++K+W G+ T G + V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 506 YMVAWSS--DSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGG 563
V + D +++ S D T+K+W+ +TK L GH V + P + SG
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 564 KDKVLRLWQ 572
+D L++W
Sbjct: 248 EDGTLKIWN 256
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 191 FQVRPVTRCTSS----MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC- 245
F++R T H + + S+ P + SGS D TV+ W+ L +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 246 EGHKHWVLCIAWSP-DSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH 304
EGH+H+V+C+A++P D SGC + + W G ++ + + + P
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 305 LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTIK 363
++ D I+IWD CV L H +V+ + + +I S S+D T+K
Sbjct: 196 --PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 364 VWRASDGVMCRTL 376
+W +S + +TL
Sbjct: 254 IWNSSTYKVEKTL 266
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 102/279 (36%), Gaps = 49/279 (17%)
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVI 273
KF + GS D +R ++ T + E H ++ IA P ++SG + +
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 274 HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVR 333
W+ + Q GH+ ++ +++ P FAS D +++W + S
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 334 VLTS-HTRSVTCIRW---GGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALS 389
LT+ R V + + + +AS D TIK+W TLEGH
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--------- 228
Query: 390 TDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKE 449
S + A + P ++SGS+D TL +WN
Sbjct: 229 -------------------------SNVSFAVFHPTLP---IIISGSEDGTLKIWNSSTY 260
Query: 450 KKSLARMTGHQQLINCVEFSPDGR--IIASASFDKSIKL 486
K G ++ C+ P GR IAS FD +
Sbjct: 261 KVEKTLNVGLERSW-CIATHPTGRKNYIASG-FDNGFTV 297
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 105 SMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKC-----EGTPYLFYVN 158
+ GH V+ V F+P S ASG D TV+ W + TP F G Y+ Y
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY- 193
Query: 159 ETEITKTLADVLPLDTLNTEEVVDI-VYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSP 217
L D + T + + + I YQ ++ C +++ GH V F P
Sbjct: 194 ------PLPDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHP 238
Query: 218 NGRSLASGSGDTTVRFWDVTTQTPLFKCEG------HKHWVLCIAWSPDSKQ--LVSGCK 269
+ SGS D T++ W+ +T +K E + W CIA P ++ + SG
Sbjct: 239 TLPIIISGSEDGTLKIWNSST----YKVEKTLNVGLERSW--CIATHPTGRKNYIASGFD 292
Query: 270 NG 271
NG
Sbjct: 293 NG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 443 LWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHV 502
LWN E + + + + + + +F I S D I++++ G+ + H
Sbjct: 39 LWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97
Query: 503 QAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK-KIEQDLPGHGDEVYAVDWAP-DGEKVA 560
+ +A ++SGS D T+K+WN + +EQ GH V V + P D A
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157
Query: 561 SGGKDKVLRLW 571
SG D+ +++W
Sbjct: 158 SGCLDRTVKVW 168
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 47/110 (42%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA 522
+ ++F P + + + ++LW+ + +++ V + + ++ GS
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 523 DSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
D ++V+N T + D H D + ++ P V SG D ++LW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGT 151
C +++ GH V F P + SGS D T++ W+ +T +K E T
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----YKVEKT 265
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 353 IYSASQDRTIKVWR-ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANP 411
+ S S D T+K+W ++ + +T EGH H+V +A NP
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF---------------------NP 150
Query: 412 EESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP- 470
++ S A SG D T+ +W+ + + TG ++ +N V++ P
Sbjct: 151 KDPSTFA---------------SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 471 -DGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
D + +AS D +IK+WD + + TL GH+ V + +++SGS D TLK+W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 530 NMKTKKIEQDLPGHGDEVYAVDWAPDGEK--VASG 562
N T K+E+ L + + + P G K +ASG
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Query: 389 STDYLMRVEATSTGGFKYD-PANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPE 447
S D+ +RV +TG D A+P+ + A P ++SGSDD T+ LWN E
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPD------YIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 448 KEKKSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWD-GRIGKFITTLRGHVQAV 505
GH+ + CV F+P D AS D+++K+W G+ T G + V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 506 YMVAWSS--DSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGG 563
V + D +++ S D T+K+W+ +TK L GH V + P + SG
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 564 KDKVLRLWQ 572
+D L++W
Sbjct: 248 EDGTLKIWN 256
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 191 FQVRPVTRCTSS----MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC- 245
F++R T H + + S+ P + SGS D TV+ W+ L +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 246 EGHKHWVLCIAWSP-DSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFH 304
EGH+H+V+C+A++P D SGC + + W G ++ + + + P
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 305 LNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTIK 363
++ D I+IWD CV L H +V+ + + +I S S+D T+K
Sbjct: 196 --PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 364 VWRASDGVMCRTL 376
+W +S + +TL
Sbjct: 254 IWNSSTYKVEKTL 266
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 101/277 (36%), Gaps = 49/277 (17%)
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVI 273
KF + GS D +R ++ T + E H ++ IA P ++SG + +
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 274 HAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVR 333
W+ + Q GH+ ++ +++ P FAS D +++W + S
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 334 VLTS-HTRSVTCIRW---GGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALS 389
LT+ R V + + + +AS D TIK+W TLEGH
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--------- 228
Query: 390 TDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKE 449
S + A + P ++SGS+D TL +WN
Sbjct: 229 -------------------------SNVSFAVFHPTLP---IIISGSEDGTLKIWNSSTY 260
Query: 450 KKSLARMTGHQQLINCVEFSPDGR--IIASASFDKSI 484
K G ++ C+ P GR IAS FD
Sbjct: 261 KVEKTLNVGLERSW-CIATHPTGRKNYIASG-FDNGF 295
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 105 SMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKC-----EGTPYLFYVN 158
+ GH V+ V F+P S ASG D TV+ W + TP F G Y+ Y
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY- 193
Query: 159 ETEITKTLADVLPLDTLNTEEVVDI-VYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSP 217
L D + T + + + I YQ ++ C +++ GH V F P
Sbjct: 194 ------PLPDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHP 238
Query: 218 NGRSLASGSGDTTVRFWDVTTQTPLFKCEG------HKHWVLCIAWSPDSKQ--LVSGCK 269
+ SGS D T++ W+ +T +K E + W CIA P ++ + SG
Sbjct: 239 TLPIIISGSEDGTLKIWNSST----YKVEKTLNVGLERSW--CIATHPTGRKNYIASGFD 292
Query: 270 NG 271
NG
Sbjct: 293 NG 294
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 475 IASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTK 534
I S D I++++ G+ + H + +A ++SGS D T+K+WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 535 -KIEQDLPGHGDEVYAVDWAP-DGEKVASGGKDKVLRLW 571
+EQ GH V V + P D ASG D+ +++W
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 47/110 (42%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSA 522
+ ++F P + + + +++W+ + +++ V + + ++ GS
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 523 DSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
D ++V+N T + D H D + ++ P V SG D ++LW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGT 151
C +++ GH V F P + SGS D T++ W+ +T +K E T
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----YKVEKT 265
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 124/503 (24%), Positives = 203/503 (40%), Gaps = 71/503 (14%)
Query: 105 SMPGHAEAVISVKFSPNGR-SLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEIT 163
++ G A A+ SV F P+ + SGS D TV + EG P+ F E T
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF-----------EGPPFKFKSTFGEHT 190
Query: 164 KTLADVL--PLDTLNTEEVVD---IVYQ-----KQAVFQVRPVTRCTSSMPGHAEAVISV 213
K + V P +L D ++Y K VF+ + H+ +V +
Sbjct: 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-----AHSGSVFGL 245
Query: 214 KFSPNGRSLASGSGDTTVRFWDVTT-----QTPL-FKCEGHKHWVLCIAWSPDSKQLVSG 267
+SP+G +AS S D T++ W+V T P+ + E + L I W+ + LVS
Sbjct: 246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ---LGIIWT--KQALVSI 300
Query: 268 CKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVI 327
NG I+ + G I Q GH + ITALS + S+ +G I WD+
Sbjct: 301 SANGFINFVNPELG-SIDQVRYGHNKAITALSSSA-----DGKTLFSADAEGHINSWDIS 354
Query: 328 LSQCVRVLTS-HTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNT- 385
RV H +T I+ G +++ S D +KV A G + + A+ +++
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG-GSGVDSSKAVANKLSSQ 413
Query: 386 ---LALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC----PEGEKLVSGSDD 438
LA+S D + V A +K+ Y + C + + + G D
Sbjct: 414 PLGLAVSADGDIAVAAC----YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469
Query: 439 FTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGK----- 493
+ ++ S + H I V FS +G + + D+S K+ +
Sbjct: 470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT--DQSRKVIPYSVANNFELA 527
Query: 494 FITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHG----DEVYA 549
+ H V V+WS D+ L +GS D+++ VWNM K + + G V +
Sbjct: 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNS 586
Query: 550 VDWAPDGEKVASGGKDKVLRLWQ 572
V W + + S G+D ++ W
Sbjct: 587 VIWLNE-TTIVSAGQDSNIKFWN 608
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 452 SLARMTGHQQLINCVEFSPDG--RIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVA 509
S +TG + +N V+F P RII S S D ++ +++G KF +T H + V+ V
Sbjct: 139 SNGNLTGQARAMNSVDFKPSRPFRII-SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197
Query: 510 WSSDSRLLVSGSADSTLKVWN----MKTKKIEQDL---PGHGDEVYAVDWAPDGEKVASG 562
++ D L S D T+ ++N KT E D H V+ + W+PDG K+AS
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 563 GKDKVLRLWQ 572
DK +++W
Sbjct: 258 SADKTIKIWN 267
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 132/347 (38%), Gaps = 52/347 (14%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFK--CEGHKHWVLCIAWSPDSKQ 263
H+ K SP+G ASG VR WD T T + K V I+W +SK+
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 264 L--VSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAI 321
+ V + H + TG G + G + + ++ ++P + R S D +
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGN-LTGQARAMNSVDFKP----SRPFRIISGSDDNTV 172
Query: 322 RIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHA 380
I++ + HT+ V +R+ G L S D TI ++ DG
Sbjct: 173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---------- 222
Query: 381 HWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQ-CPEGEKLVSGSDDF 439
T TG F+ D ++ H+ + + P+G K+ S S D
Sbjct: 223 ------------------TKTGVFEDDSL---KNVAHSGSVFGLTWSPDGTKIASASADK 261
Query: 440 TLFLWN-----PEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKF 494
T+ +WN EK R+ Q I + + + S S + I + +G
Sbjct: 262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-----QALVSISANGFINFVNPELGSI 316
Query: 495 ITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLP 541
GH +A+ ++ S+D + L S A+ + W++ T + P
Sbjct: 317 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 363
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 53/198 (26%)
Query: 424 AQCPEGEKL--VSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFD 481
P G+K+ +G+ +T+ P T H + SP G AS
Sbjct: 25 GNTPAGDKIQYCNGTSVYTV----PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80
Query: 482 KSIKLWDGRIGKFI--TTLRGHVQAVYMVAWSSDSR------------------------ 515
++++WD I TT+ V ++W S+S+
Sbjct: 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 140
Query: 516 ---------------------LLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAP 554
++SGS D+T+ ++ K + H V++V + P
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 555 DGEKVASGGKDKVLRLWQ 572
DG AS G D + L+
Sbjct: 201 DGSLFASTGGDGTIVLYN 218
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 105/264 (39%), Gaps = 65/264 (24%)
Query: 334 VLTSHTRSVTCIRWG-------GSGLIYSASQDRTIKVWRASD-------GVMCRTLEGH 379
+L H+ VT I G S ++ S S+D+T+ +W+ + G+ + L GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 380 AHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDF 439
H+V+ LALS Q C +S S D
Sbjct: 76 NHFVSDLALS---------------------------------QENCFA----ISSSWDK 98
Query: 440 TLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITT 497
TL LW+ + + R GHQ + V FSPD R I SA ++ IKLW+ G
Sbjct: 99 TLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 498 LRGHVQAVYMVAWSSDSR----------LLVSGSADSTLKVWNMKTKKIEQDLPGHGDEV 547
H V V +S + S D LKVWN + I H V
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHESNV 216
Query: 548 YAVDWAPDGEKVASGGKDKVLRLW 571
+ +P+G+ +A+GGKDK L +W
Sbjct: 217 NHLSISPNGKYIATGGKDKKLLIW 240
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Query: 423 QAQCPEGEKLVSGSDDFTLFLWNPEKEKKS------LARMTGHQQLINCVEFSPDGRIIA 476
Q + + L+SGS D T+ +W +E+++ +TGH ++ + S +
Sbjct: 33 QKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92
Query: 477 SASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM--KTK 534
S+S+DK+++LWD R G GH VY VA+S D+R ++S A+ +K+WN+ + K
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 535 KIEQDLPGHGDEVYAVDWAP---DGEKV-------ASGGKDKVLRLWQ 572
+ H D V V ++P KV AS G D L++W
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 202 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDS 261
++ GH V + S S S D T+R WD+ T T + GH+ V +A+SPD+
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 262 KQLVSGCKNGVIHAWDS-STGKQIGQPMRGHKQWITALSWEPFHLNHQ-----CRRFASS 315
+Q++S I W+ K H W++ + + P + FAS
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 316 GKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVW 365
G DG +++W+ Q +H +V + +G I + +D+ + +W
Sbjct: 191 GWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 93/244 (38%), Gaps = 39/244 (15%)
Query: 106 MPGHAEAVISV------KFSPNGRSLASGSGDTTVRFWDV--TTQTPLFKCEGTPYLFYV 157
+ GH++ V S+ K + + L SGS D TV W + Q F G P+
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF---GIPHKALT 73
Query: 158 NETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--SMPGHAEAVISVKF 215
LA L+ E I ++ + T+ GH V SV F
Sbjct: 74 GHNHFVSDLA-------LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 216 SPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKH--WVLCIAWSPDSKQ---------- 263
SP+ R + S + ++ W++ + E H WV C+ +SP K
Sbjct: 127 SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 264 LVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRI 323
S +G + W+ T QI + H+ + LS P + A+ GKD + I
Sbjct: 187 FASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISP-----NGKYIATGGKDKKLLI 239
Query: 324 WDVI 327
WD++
Sbjct: 240 WDIL 243
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/352 (20%), Positives = 134/352 (38%), Gaps = 63/352 (17%)
Query: 246 EGHKHWVLCIAW------SPDSKQLVSGCKNGVIHAWDSSTGKQIG------QPMRGHKQ 293
EGH WV I + DS L+SG ++ + W +Q G + + GH
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77
Query: 294 WITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL- 352
+++ L+ L+ + SS D +R+WD+ + H V + +
Sbjct: 78 FVSDLA-----LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 353 IYSASQDRTIKVWRASDGVMCRTLE--GHAHWVNTLALSTDYLMRVEATSTGGFKYDPAN 410
I SA +R IK+W + E H+ WV+ + +Y P
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV------------------RYSPIM 174
Query: 411 PEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP 470
+ A Y S D L +WN + + + H+ +N + SP
Sbjct: 175 KSANKVQPFAPY---------FASVGWDGRLKVWNTNFQIRYTFK--AHESNVNHLSISP 223
Query: 471 DGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWN 530
+G+ IA+ DK + +WD + + +A++ + + G+ D +K++N
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFN 282
Query: 531 MKTKK------IEQD-------LPGHGDEVYAVDWAPDGEKVASGGKDKVLR 569
+ T+ IE + G + ++ W G+K+ +G D V+R
Sbjct: 283 LMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 10/169 (5%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG---TPYLFYVNETEITK 164
GH V SV FSP+ R + S + ++ W++ + E + ++ V + I K
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 165 TLADVLPLDTLNTEEVVDIVYQK-QAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLA 223
+ V P D + FQ+R + H V + SPNG+ +A
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIR------YTFKAHESNVNHLSISPNGKYIA 229
Query: 224 SGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGV 272
+G D + WD+ T + + IA++P + + G GV
Sbjct: 230 TGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGV 278
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 115/287 (40%), Gaps = 40/287 (13%)
Query: 275 AWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRV 334
A +S+GK Q +T L+W +H + ++G +R+W+ + V
Sbjct: 99 ALSASSGKTTNQ--------VTCLAW-----SHDGNSIVTGVENGELRLWNKT-GALLNV 144
Query: 335 LTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYL 393
L H + ++W G I S + +W G + +
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV--------------------M 184
Query: 394 MRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSL 453
E TGG N E S + + +K V +F++ EK
Sbjct: 185 QHFELKETGG---SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQI-TEKTPT 240
Query: 454 ARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSD 513
++ GH I+ +EF+ +++ SAS D ++++W G G GH Q++ +W D
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD 300
Query: 514 SRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVA 560
+ ++S S D ++++W++K + G ++A + DG+K A
Sbjct: 301 DK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA 346
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 97/245 (39%), Gaps = 22/245 (8%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPL----FKCEGTPYLFYVNETEITK 164
H ++SVK++ +G + S + W+V + T + K G + N +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC-TSSMPGHAEAVISVKFSPNGRSLA 223
DV +D ++ I K A+F + + T + GH + ++F+ + L
Sbjct: 208 LGVDVEWVD----DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263
Query: 224 SGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQ 283
S S D T+R W GH ++ +W D K ++S +G + W
Sbjct: 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTL 322
Query: 284 IGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVT 343
+ + + + ++ +++A + DG + ++D ++ L S +RS+
Sbjct: 323 LALSI------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYD------LKKLNSKSRSLY 370
Query: 344 CIRWG 348
R G
Sbjct: 371 GNRDG 375
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 30/149 (20%)
Query: 437 DDFTLFLWNP-------EKEKKSLARMTGHQQLINCVEFSPDGR------IIASASFDKS 483
D+ WNP EK S+AR L VE +G+ IIA +
Sbjct: 46 DNIVSSTWNPLDESILAYGEKNSVAR------LARIVETDQEGKKYWKLTIIAELRHPFA 99
Query: 484 IKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGH 543
+ G+ +T L AWS D +V+G + L++WN KT + L H
Sbjct: 100 LSASSGKTTNQVTCL----------AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFH 148
Query: 544 GDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
+ +V W DG + S + V LW
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWN 177
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLW 487
+G +V+G ++ L LWN K L + H+ I V+++ DG I S + LW
Sbjct: 119 DGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176
Query: 488 DGRIGKFITTLR---------------GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMK 532
+ G + G V W D + ++ G + V+ +
Sbjct: 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF-VYQIT 235
Query: 533 TKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
K L GH + +++ + + S D LR+W
Sbjct: 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 432 LVSGSDDFTLFLWN----PEKEKKSLAR--MTGHQQLINCVEFSP-DGRIIASASFDKSI 484
L+S SDD T+ LW+ P++ + A+ TGH ++ V + + S + D+ +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 485 KLWDGR---IGKFITTLRGHVQAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIE-QD 539
+WD R K T+ H V ++++ S +L +GSAD T+ +W+++ K++
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 540 LPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
H DE++ V W+P E + AS G D+ L +W
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 51/260 (19%)
Query: 335 LTSHTRSVTCIRWGGS--GLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDY 392
L H + + W + G + SAS D TI +W + +T
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN--------------------ATPK 218
Query: 393 LMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKS 452
RV + F A E+ + H L + S +DD L +W+ S
Sbjct: 219 EHRV-IDAKNIFTGHTAVVEDVAWHLLHE--------SLFGSVADDQKLMIWDTRNNNTS 269
Query: 453 LARMT--GHQQLINCVEFSPDGR-IIASASFDKSIKLWDGRIGKF-ITTLRGHVQAVYMV 508
T H +NC+ F+P I+A+ S DK++ LWD R K + + H ++ V
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 509 AWS-SDSRLLVSGSADSTLKVWNMKTKKIEQ------DLP--------GHGDEVYAVDWA 553
WS + +L S D L VW++ EQ D P GH ++ W
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Query: 554 PDGE-KVASGGKDKVLRLWQ 572
P+ + S +D ++++WQ
Sbjct: 390 PNEPWIICSVSEDNIMQVWQ 409
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 27/238 (11%)
Query: 108 GHAEAVISVKFSPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL 166
GH + + ++PN L S S D T+ WD+ + +F T + + +
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDV 239
Query: 167 ADVLPLDTLNTEEVVDIVYQKQAVFQVRP--VTRCTSSMPGHAEAVISVKFSPNGRS-LA 223
A L ++L D QK ++ R ++ + ++ H V + F+P LA
Sbjct: 240 AWHLLHESLFGSVADD---QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 224 SGSGDTTVRFWDV-TTQTPLFKCEGHKHWVLCIAWSPDSKQ-LVSGCKNGVIHAWD---- 277
+GS D TV WD+ + L E HK + + WSP ++ L S + +H WD
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 278 ----SSTGKQIGQP-----MRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
S+ + G P GH I+ SW P ++ S +D +++W +
Sbjct: 357 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 432 LVSGSDDFTLFLWN----PEKEKKSLAR--MTGHQQLINCVEFSP-DGRIIASASFDKSI 484
L+S SDD T+ LW+ P++ + A+ TGH ++ V + + S + D+ +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 485 KLWDGR---IGKFITTLRGHVQAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIE-QD 539
+WD R K T+ H V ++++ S +L +GSAD T+ +W+++ K++
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 540 LPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
H DE++ V W+P E + AS G D+ L +W
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 51/260 (19%)
Query: 335 LTSHTRSVTCIRWGGS--GLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDY 392
L H + + W + G + SAS D TI +W + +T
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN--------------------ATPK 216
Query: 393 LMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKS 452
RV + F A E+ + H L + S +DD L +W+ S
Sbjct: 217 EHRV-IDAKNIFTGHTAVVEDVAWHLLHE--------SLFGSVADDQKLMIWDTRNNNTS 267
Query: 453 LARMT--GHQQLINCVEFSPDGR-IIASASFDKSIKLWDGRIGKF-ITTLRGHVQAVYMV 508
T H +NC+ F+P I+A+ S DK++ LWD R K + + H ++ V
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 509 AWS-SDSRLLVSGSADSTLKVWNMKTKKIEQ------DLP--------GHGDEVYAVDWA 553
WS + +L S D L VW++ EQ D P GH ++ W
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Query: 554 PDGE-KVASGGKDKVLRLWQ 572
P+ + S +D ++++WQ
Sbjct: 388 PNEPWIICSVSEDNIMQVWQ 407
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 27/238 (11%)
Query: 108 GHAEAVISVKFSPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL 166
GH + + ++PN L S S D T+ WD+ + +F T + + +
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDV 237
Query: 167 ADVLPLDTLNTEEVVDIVYQKQAVFQVRP--VTRCTSSMPGHAEAVISVKFSPNGRS-LA 223
A L ++L D QK ++ R ++ + ++ H V + F+P LA
Sbjct: 238 AWHLLHESLFGSVADD---QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 224 SGSGDTTVRFWDV-TTQTPLFKCEGHKHWVLCIAWSPDSKQ-LVSGCKNGVIHAWD---- 277
+GS D TV WD+ + L E HK + + WSP ++ L S + +H WD
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 278 ----SSTGKQIGQP-----MRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
S+ + G P GH I+ SW P ++ S +D +++W +
Sbjct: 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWIICSVSEDNIMQVWQM 408
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 389 STDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEK 448
STD +++ + F E + K A+ + A P L +GS D T+ +W E+
Sbjct: 31 STDRKIKLVSVKYDDFTLIDVLDETAHKKAI-RSVAWRPHTSLLAAGSFDSTVSIWAKEE 89
Query: 449 ------EKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWD----GRIGKFITTL 498
E LA + GH+ + V +S DG +A+ S DKS+ +W+ G + I+ L
Sbjct: 90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149
Query: 499 RGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIE--QDLPGHGDEVYAVDWAPDG 556
+ H Q V V W LL S S D T+++W E L GH V W+ D
Sbjct: 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDF 205
Query: 557 EK------VASGGKDKVLRLWQ 572
+K + SG D +R+W+
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWK 227
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 172 LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTV 231
L T +T+ + +V K F + V T+ H +A+ SV + P+ LA+GS D+TV
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETA----HKKAIRSVAWRPHTSLLAAGSFDSTV 82
Query: 232 RFW------DVTTQTPLFK-CEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDS-STGKQ 283
W D T + L EGH++ V +AWS D L + ++ + W++ +G++
Sbjct: 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142
Query: 284 IG--QPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILS--QCVRVLTSHT 339
++ H Q + + W P ASS D +RIW +CV VL H
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSE-----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHE 197
Query: 340 RSVTCIRWGGSGLIY---SASQDRTIKVWR 366
+V + + ++ S S D T++VW+
Sbjct: 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 431 KLVS-GSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDG 489
KLVS DDFTL + T H++ I V + P ++A+ SFD ++ +W
Sbjct: 37 KLVSVKYDDFTLI---------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87
Query: 490 RIG-------KFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQD--- 539
+ + GH V VAWS+D L + S D ++ +W E +
Sbjct: 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147
Query: 540 -LPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQN 573
L H +V V W P +AS D +R+W++
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 459 HQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKF----ITTLRGHVQAVYMVAWSSDS 514
+++ I +FS I+A+ S D+ IKL + F + H +A+ VAW +
Sbjct: 13 YKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT 70
Query: 515 RLLVSGSADSTLKVWNMKT---KKIEQDL----PGHGDEVYAVDWAPDGEKVASGGKDKV 567
LL +GS DST+ +W + + E DL GH +EV V W+ DG +A+ +DK
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 568 LRLWQ 572
+ +W+
Sbjct: 131 VWIWE 135
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 109/310 (35%), Gaps = 69/310 (22%)
Query: 75 LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTV 134
L T +T+ + +V K F + V T+ H +A+ SV + P+ LA+GS D+TV
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETA----HKKAIRSVAWRPHTSLLAAGSFDSTV 82
Query: 135 RFWDVTTQTPLFKCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVR 194
W EE D ++ +
Sbjct: 83 SIW--------------------------------------AKEESADRTFEMDLL---- 100
Query: 195 PVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC----EGHKH 250
+ + GH V V +S +G LA+ S D +V W+ ++C + H
Sbjct: 101 ------AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 251 WVLCIAWSPDSKQLVSGCKNGVIHAW-DSSTGKQIGQPMRGHKQWITALSWEPFHLNHQC 309
V + W P L S + + W D + + GH+ + + F
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS---SDFDKTEGV 211
Query: 310 RRFASSGKDGAIRIWDVILSQ--------CVRVLTS-HTRSVTCIRWGGSGLIYSASQDR 360
R S D +R+W + C +L H R V + WG +GLI S D
Sbjct: 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG 271
Query: 361 TIKVWRASDG 370
+ V+ DG
Sbjct: 272 VLAVYEEVDG 281
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 432 LVSGSDDFTLFLWN----PEKEKKSLAR--MTGHQQLINCVEFSP-DGRIIASASFDKSI 484
L+S SDD T+ LW+ P++ + A+ TGH ++ V + + S + D+ +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 485 KLWDGR---IGKFITTLRGHVQAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIE-QD 539
+WD R K T+ H V ++++ S +L +GSAD T+ +W+++ K++
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 540 LPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
H DE++ V W+P E + AS G D+ L +W
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 51/260 (19%)
Query: 335 LTSHTRSVTCIRWGGS--GLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDY 392
L H + + W + G + SAS D TI +W + +T
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN--------------------ATPK 220
Query: 393 LMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKS 452
RV + F A E+ + H L + S +DD L +W+ S
Sbjct: 221 EHRV-IDAKNIFTGHTAVVEDVAWHLLHE--------SLFGSVADDQKLMIWDTRNNNTS 271
Query: 453 LARMT--GHQQLINCVEFSPDGR-IIASASFDKSIKLWDGRIGKF-ITTLRGHVQAVYMV 508
T H +NC+ F+P I+A+ S DK++ LWD R K + + H ++ V
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 509 AWS-SDSRLLVSGSADSTLKVWNMKTKKIEQ------DLP--------GHGDEVYAVDWA 553
WS + +L S D L VW++ EQ D P GH ++ W
Sbjct: 332 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Query: 554 PDGE-KVASGGKDKVLRLWQ 572
P+ + S +D ++++WQ
Sbjct: 392 PNEPWIICSVSEDNIMQVWQ 411
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 27/240 (11%)
Query: 106 MPGHAEAVISVKFSPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
+ GH + + ++PN L S S D T+ WD+ + +F T + +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVE 239
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRP--VTRCTSSMPGHAEAVISVKFSPNGRS- 221
+A L ++L D QK ++ R ++ + ++ H V + F+P
Sbjct: 240 DVAWHLLHESLFGSVADD---QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 222 LASGSGDTTVRFWDVTT-QTPLFKCEGHKHWVLCIAWSPDSKQ-LVSGCKNGVIHAWD-- 277
LA+GS D TV WD+ + L E HK + + WSP ++ L S + +H WD
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 278 ------SSTGKQIGQP-----MRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
S+ + G P GH I+ SW P ++ S +D +++W +
Sbjct: 357 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWIICSVSEDNIMQVWQM 412
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 432 LVSGSDDFTLFLWN----PEKEKKSLAR--MTGHQQLINCVEFSP-DGRIIASASFDKSI 484
L+S SDD T+ LW+ P++ K A+ TGH ++ V + + S + D+ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 485 KLWDGR---IGKFITTLRGHVQAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIE-QD 539
+WD R K ++ H V ++++ S +L +GSAD T+ +W+++ K++
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 540 LPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
H DE++ V W+P E + AS G D+ L +W
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 51/260 (19%)
Query: 335 LTSHTRSVTCIRWGG--SGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDY 392
L H + + W SG + SAS D TI +W S EG V+ + T +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDIS----AVPKEGKV--VDAKTIFTGH 226
Query: 393 LMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEK-- 450
V E+ S H L + S +DD L +W+
Sbjct: 227 TAVV---------------EDVSWHLLHE--------SLFGSVADDQKLMIWDTRSNNTS 263
Query: 451 KSLARMTGHQQLINCVEFSPDGR-IIASASFDKSIKLWDGRIGKF-ITTLRGHVQAVYMV 508
K + H +NC+ F+P I+A+ S DK++ LWD R K + + H ++ V
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 509 AWSSDSR-LLVSGSADSTLKVWNMKTKKIEQ------DLP--------GHGDEVYAVDWA 553
WS + +L S D L VW++ EQ D P GH ++ W
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
Query: 554 PDGE-KVASGGKDKVLRLWQ 572
P+ + S +D ++++WQ
Sbjct: 384 PNEPWVICSVSEDNIMQVWQ 403
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 101/250 (40%), Gaps = 29/250 (11%)
Query: 98 PVTRCTSSMP--GHAEAVISVKFSPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYL 154
P C + GH + + ++PN L S S D T+ WD++ K +
Sbjct: 163 PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 155 FYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRP--VTRCTSSMPGHAEAVIS 212
F T + + ++ L ++L D QK ++ R ++ + S+ H V
Sbjct: 223 F-TGHTAVVEDVSWHLLHESLFGSVADD---QKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 213 VKFSPNGRS-LASGSGDTTVRFWDV-TTQTPLFKCEGHKHWVLCIAWSPDSKQ-LVSGCK 269
+ F+P LA+GS D TV WD+ + L E HK + + WSP ++ L S
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 270 NGVIHAWD--------SSTGKQIGQP-----MRGHKQWITALSWEPFHLNHQCRRFASSG 316
+ ++ WD S + G P GH I+ SW P ++ S
Sbjct: 339 DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWVICSVS 394
Query: 317 KDGAIRIWDV 326
+D +++W +
Sbjct: 395 EDNIMQVWQM 404
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 25/204 (12%)
Query: 189 AVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSL-ASGSGDTTVRFWDV---TTQTPLFK 244
AV + V + GH V V + SL S + D + WD T P
Sbjct: 209 AVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHS 268
Query: 245 CEGHKHWVLCIAWSPDSK-QLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPF 303
+ H V C++++P S+ L +G + + WD K HK I + W P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP- 327
Query: 304 HLNHQCRRFASSGKDGAIRIWDVIL--------------SQCVRVLTSHTRSVTCIRWGG 349
H ASSG D + +WD+ + + + HT ++ W
Sbjct: 328 ---HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384
Query: 350 SG--LIYSASQDRTIKVWRASDGV 371
+ +I S S+D ++VW+ ++ +
Sbjct: 385 NEPWVICSVSEDNIMQVWQMAENI 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 432 LVSGSDDFTLFLWN----PEKEK--KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSI 484
L+S SDD T+ LW+ P++ K + A TGH ++ V + + S + D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 485 KLWDGR---IGKFITTLRGHVQAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIE-QD 539
+WD R K + H V ++++ S +L +GSAD T+ +W+++ K++
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 540 LPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
H DE++ V W+P E + AS G D+ L +W
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 103/260 (39%), Gaps = 51/260 (19%)
Query: 335 LTSHTRSVTCIRWGG--SGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDY 392
L H + + W SG + SAS D T+ +W + G EG V+ A+ T +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPK----EGKI--VDAKAIFTGH 228
Query: 393 LMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKE--K 450
V E+ + H L + S +DD L +W+
Sbjct: 229 SAVV---------------EDVAWHLLHE--------SLFGSVADDQKLXIWDTRSNTTS 265
Query: 451 KSLARMTGHQQLINCVEFSPDGR-IIASASFDKSIKLWDGRIGKF-ITTLRGHVQAVYMV 508
K + H +NC+ F+P I+A+ S DK++ LWD R K + T H ++ V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 509 AWS-SDSRLLVSGSADSTLKVWNMKTKKIEQ------DLP--------GHGDEVYAVDWA 553
WS + +L S D L VW++ EQ D P GH ++ W
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
Query: 554 PDGEKV-ASGGKDKVLRLWQ 572
P+ V S +D + ++WQ
Sbjct: 386 PNEPWVICSVSEDNIXQIWQ 405
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 25/188 (13%)
Query: 205 GHAEAVISVKFSPNGRSL-ASGSGDTTVRFWDV---TTQTPLFKCEGHKHWVLCIAWSPD 260
GH+ V V + SL S + D + WD TT P + H V C++++P
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 261 SK-QLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDG 319
S+ L +G + + WD K HK I + W P H ASSG D
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP----HNETILASSGTDR 342
Query: 320 AIRIWDVIL--------------SQCVRVLTSHTRSVTCIRWGGSG--LIYSASQDRTIK 363
+ +WD+ + + + HT ++ W + +I S S+D +
Sbjct: 343 RLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402
Query: 364 VWRASDGV 371
+W+ ++ +
Sbjct: 403 IWQXAENI 410
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 96/248 (38%), Gaps = 29/248 (11%)
Query: 98 PVTRCTSSMP--GHAEAVISVKFSPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYL 154
P C + GH + + ++ N L S S D TV WD+ K +
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 155 FYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSS--MPGHAEAVIS 212
F + + + +A L ++L D QK ++ R T S + H V
Sbjct: 225 F-TGHSAVVEDVAWHLLHESLFGSVADD---QKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 213 VKFSPNGRS-LASGSGDTTVRFWDV-TTQTPLFKCEGHKHWVLCIAWSPDSKQ-LVSGCK 269
+ F+P LA+GS D TV WD+ + L E HK + + WSP ++ L S
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 270 NGVIHAWD--------SSTGKQIGQP-----MRGHKQWITALSWEPFHLNHQCRRFASSG 316
+ ++ WD S+ + G P GH I+ SW P ++ S
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWVICSVS 396
Query: 317 KDGAIRIW 324
+D +IW
Sbjct: 397 EDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 432 LVSGSDDFTLFLWN----PEKEK--KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSI 484
L+S SDD T+ LW+ P++ K + A TGH ++ V + + S + D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 485 KLWDGR---IGKFITTLRGHVQAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIE-QD 539
+WD R K + H V ++++ S +L +GSAD T+ +W+++ K++
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 540 LPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
H DE++ V W+P E + AS G D+ L +W
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 51/260 (19%)
Query: 335 LTSHTRSVTCIRWGG--SGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDY 392
L H + + W SG + SAS D T+ +W + G EG V+ A+ T +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPK----EGKI--VDAKAIFTGH 228
Query: 393 LMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKS 452
V E+ + H L + S +DD L +W+ S
Sbjct: 229 SAVV---------------EDVAWHLLHE--------SLFGSVADDQKLMIWDTRSNTTS 265
Query: 453 LAR--MTGHQQLINCVEFSPDGR-IIASASFDKSIKLWDGRIGKF-ITTLRGHVQAVYMV 508
+ H +NC+ F+P I+A+ S DK++ LWD R K + T H ++ V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 509 AWS-SDSRLLVSGSADSTLKVWNMKTKKIEQ------DLP--------GHGDEVYAVDWA 553
WS + +L S D L VW++ EQ D P GH ++ W
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
Query: 554 PDGE-KVASGGKDKVLRLWQ 572
P+ + S +D ++++WQ
Sbjct: 386 PNEPWVICSVSEDNIMQIWQ 405
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 29/250 (11%)
Query: 98 PVTRCTSSMP--GHAEAVISVKFSPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYL 154
P C + GH + + ++ N L S S D TV WD+ K +
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 155 FYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSS--MPGHAEAVIS 212
F + + + +A L ++L D QK ++ R T S + H V
Sbjct: 225 F-TGHSAVVEDVAWHLLHESLFGSVADD---QKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 213 VKFSPNGRS-LASGSGDTTVRFWDV-TTQTPLFKCEGHKHWVLCIAWSPDSKQ-LVSGCK 269
+ F+P LA+GS D TV WD+ + L E HK + + WSP ++ L S
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 270 NGVIHAWD--------SSTGKQIGQP-----MRGHKQWITALSWEPFHLNHQCRRFASSG 316
+ ++ WD S+ + G P GH I+ SW P ++ S
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWVICSVS 396
Query: 317 KDGAIRIWDV 326
+D ++IW +
Sbjct: 397 EDNIMQIWQM 406
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTLR-------GHV 502
K++ + GH + + + P + +IAS S D ++ +W+ G + LR GH
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 503 QAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIEQDLPG--HGDEVYAVDWAPDGEKV 559
+ V +VAW ++ +L+S D+ + VW++ T L H D +Y+VDW+ DG +
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 560 ASGGKDKVLRL 570
+ +DK +R+
Sbjct: 192 CTSCRDKRVRV 202
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 205 GHAEAVISVKFSP-NGRSLASGSGDTTVRFWDV-------TTQTPLFKCEGHKHWVLCIA 256
GH V+ + + P N +ASGS D TV W++ + P+ EGH V +A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 257 WSPDSKQ--LVSGCKNGVIHAWDSSTGKQI 284
W P ++ L +GC N VI WD TG +
Sbjct: 139 WHPTAQNVLLSAGCDN-VILVWDVGTGAAV 167
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 489 GRIGKFITTLRGHVQAVYMVAWSS-DSRLLVSGSADSTLKVWN-------MKTKKIEQDL 540
GR+ K + + GH V +AW + ++ SGS D T+ VW + ++ L
Sbjct: 68 GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 541 PGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
GH V V W P + V S G D V+ +W
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 61/228 (26%)
Query: 332 VRVLTSHTRSVTCIRW--GGSGLIYSASQDRTIKVWRASDGVMCR-------TLEGHAHW 382
V ++ HT V I W +I S S+D T+ VW DG + TLEGH
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 383 VNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLF 442
V +A H A+ L+S D +
Sbjct: 134 VGIVAW----------------------------HPTAQ--------NVLLSAGCDNVIL 157
Query: 443 LWNPEKEKKSLARMTG-HQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL-RG 500
+W+ L H I V++S DG +I ++ DK +++ + R G + R
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217
Query: 501 H-----VQAVYMVAWSSDSRLLVSG---SADSTLKVWNMKTKKIEQDL 540
H V AV++ S+ ++L +G ++ + +W+ TK +E+ L
Sbjct: 218 HEGTRPVHAVFV----SEGKILTTGFSRMSERQVALWD--TKHLEEPL 259
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKC--EGHK 249
V P+ ++ GH + V V + P ++ L S D + WDV T + + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 250 HWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHK 292
+ + WS D + + C++ + + G + + R H+
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 38/232 (16%)
Query: 203 MPGHAEAVIS--VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG-----HKH--WVL 253
+ GH++ + + +K S RS+ G D +V F+ Q P FK HK +V
Sbjct: 156 VSGHSQRINACHLKQSRPMRSMTVGD-DGSVVFY----QGPPFKFSASDRTHHKQGSFVR 210
Query: 254 CIAWSPDSKQLV-SGCKNGVIHAWDSSTGKQIG------QPMRGHKQWITALSWEPFHLN 306
+ +SPDS + V + + I +D +G+ + +P++G I ALSW L+
Sbjct: 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG---IFALSW----LD 263
Query: 307 HQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG----GSGLIYSASQDRTI 362
Q +FA+ G D IR+WDV S+CV+ T + + + G G+G I S S D T+
Sbjct: 264 SQ--KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 363 KVWRASDGVMCRTLEGHAHWVNTLA----LSTDYLMRVEATSTGGFKYDPAN 410
+ + +T+ GH + L +S Y R+ S+ D +N
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN 373
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 437 DDFTLFLWNPEKEKKSLARMTGHQQ--LINCVEFSPD-GRIIASASFDKSIKLWDGRIGK 493
DD ++ + K S + T H+Q + VEFSPD G + + D+ I +DG+ G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 494 FITTLRGHVQ----AVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQ 538
F+ + + ++ ++W DS+ + AD+T++VW++ T K Q
Sbjct: 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ 288
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/344 (19%), Positives = 138/344 (40%), Gaps = 56/344 (16%)
Query: 211 ISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKN 270
+ V + NGR + S S D T+ F+++ L GH + + +P L+SG +
Sbjct: 302 VGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYD 356
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVI--- 327
G I W SS+ Q H I +L N + + ++S D +++ +
Sbjct: 357 GRIMEWSSSSMHQ------DHSNLIVSLD------NSKAQEYSSISWDDTLKVNGITKHE 404
Query: 328 LSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLA 387
+V +++ T + + D + + ++ G + +++ ++ + ++
Sbjct: 405 FGSQPKVASANNDGFTAV----------LTNDDDLLILQSFTGDIIKSVRLNSPG-SAVS 453
Query: 388 LSTDYL---------MRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDD 438
LS +Y+ ++V S +D P A Y + P + +G
Sbjct: 454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP----LRAKPSYISISPSETYIAAGDVM 509
Query: 439 FTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGR----------IIASASFDKSIKLWD 488
+ L++ + + +R IN + + P + ++A+ S D +I ++
Sbjct: 510 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569
Query: 489 -GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
R K I L H V + W + S L+ SG AD+ +K WN+
Sbjct: 570 VKRPMKIIKALNAHKDGVNNLLWETPSTLVSSG-ADACIKRWNV 612
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 428 EGEKLV---SGSDDFTLFL-WNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASF--D 481
EG +L G D+F +F+ W+ SL ++GH Q IN R + S + D
Sbjct: 127 EGRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQRINACHLK-QSRPMRSMTVGDD 182
Query: 482 KSIKLWDGRIGKFITTLRGHVQA---VYMVAWSSDS-RLLVSGSADSTLKVWNMKT---- 533
S+ + G KF + R H + V V +S DS +++ +D + ++ K+
Sbjct: 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242
Query: 534 KKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
K IE D ++A+ W D +K A+ G D +R+W
Sbjct: 243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW 279
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTLR-------GHV 502
K++ + GH + + + P + +IAS S D ++ +W+ G + LR GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 503 QAVYMVAWSSDSR-LLVSGSADSTLKVWNMKTKKIEQDLPG--HGDEVYAVDWAPDGEKV 559
+ V +VAW ++ +L+S D+ + VW++ T L H D +Y+VDW+ DG +
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 560 ASGGKDKVLRL 570
+ +DK +R+
Sbjct: 192 CTSCRDKRVRV 202
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 205 GHAEAVISVKFSP-NGRSLASGSGDTTVRFWDV-------TTQTPLFKCEGHKHWVLCIA 256
GH V+ + + P N +ASGS D TV W++ + P+ EGH V +A
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 257 WSPDSKQ-LVSGCKNGVIHAWDSSTGKQI 284
W P ++ L+S + VI WD TG +
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 247 GHKHWVLCIAWSPDSKQLV-SGCKNGVIHAWDSSTGKQIGQPMR-------GHKQWITAL 298
GH VL IAW P + ++ SG ++ + W+ G + P+R GH + + +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLV-LPLREPVITLEGHTKRVGIV 137
Query: 299 SWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCVRVLTS--HTRSVTCIRWGGSG-LIYS 355
+W P N S+G D I +WDV V L H ++ + W G LI +
Sbjct: 138 AWHPTAQN----VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Query: 356 ASQDRTIKVWRASDGVM 372
+ +D+ ++V G +
Sbjct: 194 SCRDKRVRVIEPRKGTV 210
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 489 GRIGKFITTLRGHVQAVYMVAWSS-DSRLLVSGSADSTLKVWN-------MKTKKIEQDL 540
GR+ K + + GH V +AW + ++ SGS D T+ VW + ++ L
Sbjct: 68 GRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 541 PGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
GH V V W P + V S G D V+ +W
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW 159
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 61/228 (26%)
Query: 332 VRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASDGVMCR-------TLEGHAHW 382
V ++ HT V I W +I S S+D T+ VW DG + TLEGH
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 383 VNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLF 442
V +A H A+ L+S D +
Sbjct: 134 VGIVAW----------------------------HPTAQ--------NVLLSAGXDNVIL 157
Query: 443 LWNPEKEKKSLARMTG-HQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL-RG 500
+W+ L H I V++S DG +I ++ DK +++ + R G + R
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217
Query: 501 H-----VQAVYMVAWSSDSRLLVSG---SADSTLKVWNMKTKKIEQDL 540
H V AV++ S+ ++L +G ++ + +W+ TK +E+ L
Sbjct: 218 HEGTRPVHAVFV----SEGKILTTGFSRMSERQVALWD--TKHLEEPL 259
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 193 VRPVTRCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQTPLFKC--EGHK 249
V P+ ++ GH + V V + P ++ L S D + WDV T + + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 250 HWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHK 292
+ + WS D + + C++ + + G + + R H+
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSL-ARMTGHQQLINCVEFSPDGRIIASASFDKSIK 485
P+G L+ G + TL +W+ + A +T + SPD ++ S D +I
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 486 LWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKT-KKIEQDLPGHG 544
+WD + +GH + S+D L +G D+T++ W+++ ++++Q
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFT 224
Query: 545 DEVYAVDWAPDGEKVASG 562
+++++ + P GE +A G
Sbjct: 225 SQIFSLGYCPTGEWLAVG 242
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSG 520
I + PDG + ++ +WD + L A Y +A S DS++ S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 521 SADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
+D + VW++ + + + GH D +D + DG K+ +GG D +R W
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 109 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVT---TQTPLFKCEGTPYLFYVNETEITKT 165
H E V +V S R + +G G V+ WD++ ++P+ + + Y+ ++
Sbjct: 50 HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 166 LADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASG 225
++ +T + D+ P R + + A A ++ SP+ + S
Sbjct: 109 GCTLIVGGEASTLSIWDLA---------APTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 226 SGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQIG 285
D + WD+ QT + + +GH CI S D +L +G + + +WD G+Q+
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 286 Q 286
Q
Sbjct: 220 Q 220
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 119/333 (35%), Gaps = 54/333 (16%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVT---TQTPL--FKCEGHKHWVLCIAWSPD 260
H E V +V S R + +G G V+ WD++ ++P+ C +++ PD
Sbjct: 50 HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 261 SKQLVSGCKNGVIHAWD-SSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDG 319
L+ G + + WD ++ +I + AL+ P + S DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWRASDGVMCRTLEG 378
I +WD+ VR HT +CI G +++ D T++ W +G R L+
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQ 220
Query: 379 HAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDD 438
H +L CP GE L G +
Sbjct: 221 HDFTSQIFSL-----------------------------------GYCPTGEWLAVGMES 245
Query: 439 FTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTL 498
+ + + K K + H+ + ++F+ G+ S D + W G I
Sbjct: 246 SNVEVLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303
Query: 499 RGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
+ +V S D + +V+GS D V+ +
Sbjct: 304 K-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLA 167
GH + + S +G L +G D TVR WD+ L + + T +F + + LA
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240
Query: 168 DVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSG 227
+ +++ N EV+ + K +Q+ H V+S+KF+ G+ S
Sbjct: 241 --VGMESSNV-EVLHV--NKPDKYQLHL----------HESCVLSLKFAYCGKWFVSTGK 285
Query: 228 DTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSG 267
D + W +F+ + VL S D K +V+G
Sbjct: 286 DNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTG 324
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 34/207 (16%)
Query: 203 MPGHAEAVIS--VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEG-----HKH--WVL 253
+ GH++ + + +K S RS G D +V F+ Q P FK HK +V
Sbjct: 156 VSGHSQRINACHLKQSRPXRSXTVGD-DGSVVFY----QGPPFKFSASDRTHHKQGSFVR 210
Query: 254 CIAWSPDSKQLV-SGCKNGVIHAWDSSTGKQIG------QPMRGHKQWITALSWEPFHLN 306
+ +SPDS + V + + I +D +G+ + +P++G I ALSW L+
Sbjct: 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG---IFALSW----LD 263
Query: 307 HQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG----GSGLIYSASQDRTI 362
Q +FA+ G D IR+WDV S+CV+ T + + + G G+G I S S D T+
Sbjct: 264 SQ--KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 363 KVWRASDGVMCRTLEGHAHWVNTLALS 389
+ + +T+ GH + L ++
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVN 348
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 437 DDFTLFLWNPEKEKKSLARMTGHQQ--LINCVEFSPD-GRIIASASFDKSIKLWDGRIGK 493
DD ++ + K S + T H+Q + VEFSPD G + + D+ I +DG+ G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 494 FITTLRGHVQ----AVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQ 538
F+ + + ++ ++W DS+ + AD+T++VW++ T K Q
Sbjct: 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ 288
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 428 EGEKLV---SGSDDFTLFL-WNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASF--D 481
EG +L G D+F +F+ W+ SL ++GH Q IN R S + D
Sbjct: 127 EGRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQRINACHLK-QSRPXRSXTVGDD 182
Query: 482 KSIKLWDGRIGKFITTLRGHVQA---VYMVAWSSDS-RLLVSGSADSTLKVWNMKT---- 533
S+ + G KF + R H + V V +S DS +++ +D + ++ K+
Sbjct: 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242
Query: 534 KKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
K IE D ++A+ W D +K A+ G D +R+W
Sbjct: 243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 136/341 (39%), Gaps = 50/341 (14%)
Query: 211 ISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKN 270
+ V + NGR + S S D T+ F+++ L GH + + +P L+SG +
Sbjct: 302 VGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYD 356
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQ 330
G I W SS+ Q H I +L N + + ++S D +++ + +
Sbjct: 357 GRIXEWSSSSXHQ------DHSNLIVSLD------NSKAQEYSSISWDDTLKVNGITKHE 404
Query: 331 CVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALST 390
S + + G + D + + ++ G + +++ ++ + ++LS
Sbjct: 405 ----FGSQPKVASA---NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG-SAVSLSQ 456
Query: 391 DYL---------MRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGEKLVSGSDDFTL 441
+Y+ ++V S +D P A Y + P + +G +
Sbjct: 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTP----LRAKPSYISISPSETYIAAGDVXGKI 512
Query: 442 FLWNPEKEKKSLARMTGHQQLINCVEFSPDGR----------IIASASFDKSIKLWD-GR 490
L++ + + +R IN + + P + ++A+ S D +I ++ R
Sbjct: 513 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572
Query: 491 IGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNM 531
K I L H V + W + S L+ SG AD+ +K WN+
Sbjct: 573 PXKIIKALNAHKDGVNNLLWETPSTLVSSG-ADACIKRWNV 612
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLV 265
H + V +V +G SGS D ++ WD+ Q L H V C+A SP +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 266 SGC-KNGVIHAWDSSTGK---QIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAI 321
C ++ I WD+ K QIG G+ T+L+W P Q F ++G +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLP--TSLAWHP----QQSEVFVFGDENGTV 239
Query: 322 RIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYS 355
+ D + CV H++ VT GL++S
Sbjct: 240 SLVDTKSTSCVLSSAVHSQCVT-------GLVFS 266
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 104 SSMPGHAEAVISVKFSPNGRSL-ASGSGDTTVRFWDVTTQTPLFK--CEGTPYL-----F 155
SS HA V V SP+ S+ S S D + WD P + C YL +
Sbjct: 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKF 215
+ ++E+ + D T +VD T C S H++ V + F
Sbjct: 223 HPQQSEV------FVFGDENGTVSLVDTKS-----------TSCVLSSAVHSQCVTGLVF 265
Query: 216 SPNGRS-LASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVS--GCKNGV 272
SP+ LAS S D ++ D ++ + LF+ + H+ +V WSP + L++ G + V
Sbjct: 266 SPHSVPFLASLSEDCSLAVLD-SSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324
Query: 273 IH 274
+H
Sbjct: 325 VH 326
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 404 FKYDPANPEESSKHALAKYQAQCPE----GEK-LVSGSDDFTLFLWN-PEKEKKSLARMT 457
FK A P E A + +A + GE+ ++ SD + LW E E +++
Sbjct: 63 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC 122
Query: 458 G--HQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSS-DS 514
H +++ V G S S D IK+WD +++ R H V VA S
Sbjct: 123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 515 RLLVSGSADSTLKVWNMKTKK 535
+ +S S D+ + +W+ + K
Sbjct: 183 SVFLSCSEDNRILLWDTRCPK 203
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 473 RIIASASFDKSIKLWDGR------IGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTL 526
R I AS +++LW+ + KF H V V+ S VSGS D +
Sbjct: 94 RGILVASDSGAVELWELDENETLIVSKFCK--YEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 527 KVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
KVW++ + + H +V V +P + V S +D + LW
Sbjct: 152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 25/221 (11%)
Query: 310 RRFASSGKDGAIRIWDV------ILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIK 363
R + GA+ +W++ I+S+ + S + G+ + S S+D IK
Sbjct: 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV-SGSKDICIK 152
Query: 364 VWRASDGVMCRTLEGHAHWVNTLALST--DYLMRVEATSTGGFKYDPANPEESSK----- 416
VW + V+ + HA V +A S D + + +D P+ +S+
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212
Query: 417 -----HALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPD 471
+LA + Q E V G ++ T+ L + K + H Q + + FSP
Sbjct: 213 PGYLPTSLAWHPQQ---SEVFVFGDENGTVSLVD-TKSTSCVLSSAVHSQCVTGLVFSPH 268
Query: 472 G-RIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWS 511
+AS S D S+ + D + + + + H V WS
Sbjct: 269 SVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWS 308
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGK--FITTLRGHVQAVYMVAWSSD- 513
T H+ +I+ + G +A+ S D+S+K++D R G I LRGH V+ VAW+
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 514 -SRLLVSGSADSTLKVWNMKTKKIEQ--DLPGHGDEVYAVDWAPD--GEKVASGGKDKVL 568
+L S S D + +W + E+ + GH V +V WAP G +A G D +
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Query: 569 RL 570
L
Sbjct: 130 SL 131
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKSL-ARMTGHQQLINCVEFSPD--GRIIASASFDKSIK 485
G +L + S D ++ +++ + L A + GH+ + V ++ G I+AS S+D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 486 LWDGRIGKFITTLR--GHVQAVYMVAWSSDSR--LLVSGSADSTLKVWNM------KTKK 535
+W G + + GH +V V W+ +L GS+D + + + KK
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 536 IEQDLPGHGDEVYAVDWAP-----------DGEK------VASGGKDKVLRLWQ 572
I H AV WAP G+K ASGG D +++LW+
Sbjct: 145 INN---AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 108/296 (36%), Gaps = 54/296 (18%)
Query: 305 LNHQCRRFASSGKDGAIRIWDVILSQCVRV--LTSHTRSVTCIRWGG---SGLIYSASQD 359
+++ R A+ D +++I+DV + + L H V + W ++ S S D
Sbjct: 21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80
Query: 360 RTIKVWRASDGVMCRTLE--GHAHWVNTLALST-DYLMRVEATSTGGFKYDPANPEESSK 416
R + +WR +G ++ E GH VN++ + DY + + S+ G
Sbjct: 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI----------- 129
Query: 417 HALAKYQAQCPEGEKLVSGSDDF--TLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI 474
+L Y + K ++ + W P SL Q+ F
Sbjct: 130 -SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF------ 182
Query: 475 IASASFDKSIKLW----DGRIGKFITTLRGHVQAVYMVAW--------------SSDSRL 516
AS D IKLW DG+ K L H V VAW S D R+
Sbjct: 183 -ASGGCDNLIKLWKEEEDGQW-KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240
Query: 517 LVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
+ D++ W+ K L D V+ V W+ +A G D + LW+
Sbjct: 241 FIWTCDDASSNTWSPKL------LHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 19/229 (8%)
Query: 353 IYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDP--AN 410
+ S S+D T+++W D + + ++N++ ++ + + P A
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 411 PEESSKHALAKYQAQ-CP---EGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLI--- 463
E + L +Q C + ++SGS D T +W KE + + H +
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW---KEGSLVYNLQAHNASVWDA 148
Query: 464 NCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRG-HVQAVYMVAWSSDSRLLVSGSA 522
V FS + + ASA DK+IKLW K I T G H V +A D +S S
Sbjct: 149 KVVSFSENKFLTASA--DKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHF-ISCSN 203
Query: 523 DSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
D +K+ + T + + GH VY + P+G+ + S G+D+ +R+W
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 430 EKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDG 489
K ++ S D T+ LW +K K+ + + H ++ + DG I S S D IKL D
Sbjct: 156 NKFLTASADKTIKLWQNDKVIKTFSGI--HNDVVRHLAVVDDGHFI-SCSNDGLIKLVDX 212
Query: 490 RIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYA 549
G + T GH VY + + + VS D T+++W+ + ++Q + +++
Sbjct: 213 HTGDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIWSKENGSLKQVITLPAISIWS 271
Query: 550 VDWAPDGEKVASGGKDKVLRLW 571
VD +G+ + G D ++R++
Sbjct: 272 VDCXSNGDIIV-GSSDNLVRIF 292
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 311 RFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDG 370
F S DG I++ D +R H V CI+ +G I S +DRT+++W +G
Sbjct: 197 HFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG 256
Query: 371 VMCRTL 376
+ + +
Sbjct: 257 SLKQVI 262
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 431 KLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIK---LW 487
K+ S S D T+ LW+ + + TG Q +N V + + ++ D I L+
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 488 DGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEV 547
+ TL GH V +++ +++SGS D T KVW K + +L H V
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVW--KEGSLVYNLQAHNASV 145
Query: 548 YAVDWAPDGE-KVASGGKDKVLRLWQN 573
+ E K + DK ++LWQN
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQN 172
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 11/153 (7%)
Query: 213 VKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGV 272
V FS N + S D T++ W F H V +A D +S +G+
Sbjct: 151 VSFSEN--KFLTASADKTIKLWQNDKVIKTFSGI-HNDVVRHLA-VVDDGHFISCSNDGL 206
Query: 273 IHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQCV 332
I D TG + + GH+ ++ + P S G+D +RIW
Sbjct: 207 IKLVDXHTGDVL-RTYEGHESFVYCIKLLP------NGDIVSCGEDRTVRIWSKENGSLK 259
Query: 333 RVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVW 365
+V+T S+ + +G I S D ++++
Sbjct: 260 QVITLPAISIWSVDCXSNGDIIVGSSDNLVRIF 292
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKK----------SLARMTG--HQQLINCVEFSP-DGRI 474
EG ++SG D + L++ E + S+ R H+ + V++ P D +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 475 IASASFDKSIKLWD------GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKV 528
S+SFDK++K+WD + F T+ H +M S+ L+ G+ +++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH----HMSPVSTKHCLVAVGTRGPKVQL 170
Query: 529 WNMKTKKIEQDLPGHGDEVYAVDWAPDGEKV-ASGGKDKVLRLW 571
++K+ L GH E+ AV W+P + + A+ D ++LW
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 142/343 (41%), Gaps = 46/343 (13%)
Query: 187 KQAVFQVRPVTRCTSSMPG-HAEAVISVKFSPNGRSL-ASGSGDTTVRFWDVTT-QTP-L 242
+Q+ + + V P H +V +V++ P+ + S S D T++ WD T QT +
Sbjct: 78 RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
Query: 243 FKCEGHKHWVLCIAWSPDSKQ---LVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALS 299
F E V SP S + + G + + D +G ++GH+Q I A+S
Sbjct: 138 FNFE---ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVS 193
Query: 300 WEPFHLNHQCRRFASSGKDGAIRIWDV-ILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQ 358
W P + A++ D +++WDV S C+ L H S + SA+
Sbjct: 194 WSPRYD----YILATASADSRVKLWDVRRASGCLITLDQHNGK-------KSQAVESANT 242
Query: 359 DRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTG-GFKYDPANPEESSKH 417
KV +C T +G ++ L + TD MR+ +S G + +SK
Sbjct: 243 AHNGKV-----NGLCFTSDG----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293
Query: 418 ALAKYQAQCPEGEKLV---SGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRI 474
L K+ C + V GS +++ E+ + + GH + ++C F + +
Sbjct: 294 GL-KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ----ITMLKGHYKTVDCCVFQSNFQE 348
Query: 475 IASASFDKSIKLWDGRIGKFI-----TTLRGHVQAVYMVAWSS 512
+ S S D +I W + + + TT + + + AWSS
Sbjct: 349 LYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSS 391
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 109/304 (35%), Gaps = 88/304 (28%)
Query: 289 RGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQ------CVRVLT------ 336
R H I L EP + R S G DG I ++D+ S C V +
Sbjct: 40 RIHGGGINTLDIEPV----EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95
Query: 337 -SHTRSVTCIRW--GGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYL 393
H SV ++W +G+ S+S D+T+KVW +T L T +
Sbjct: 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW------------------DTNTLQTADV 137
Query: 394 MRVEATSTGGFKYDPANPEESSKHALAKYQAQCPEGE--KLVSGSDDFTLFLWNPEKEKK 451
E T Y S+KH L + P+ + L SGS L
Sbjct: 138 FNFEETV-----YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL---------- 182
Query: 452 SLARMTGHQQLINCVEFSPD-GRIIASASFDKSIKLWD-GRIGKFITTLRGHVQAVYMVA 509
GH+Q I V +SP I+A+AS D +KLWD R + TL H
Sbjct: 183 -----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN------- 230
Query: 510 WSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLR 569
K++ +E H +V + + DG + + G D +R
Sbjct: 231 --------------------GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 570 LWQN 573
LW +
Sbjct: 271 LWNS 274
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/356 (18%), Positives = 130/356 (36%), Gaps = 68/356 (19%)
Query: 206 HAEAVISVKFSP-NGRSLASGSGDTTVRFWDV--TTQTPLFKCEG-----------HKHW 251
H + ++ P GR + SG D + +D+ +++ + C+ H++
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 252 VLCIAWSP-DSKQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCR 310
V + W P D+ S + + WD++T + + ++ + + P H
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--ADVFNFEETVYSHHMSPVSTKHCLV 159
Query: 311 RFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGG--SGLIYSASQDRTIKVW--R 366
+ G +++ D+ C +L H + + + W ++ +AS D +K+W R
Sbjct: 160 AVGTRGP--KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 367 ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ G + TL+ H G K ++ +
Sbjct: 218 RASGCLI-TLDQH----------------------NGKKSQAVESANTAHNGKVNGLCFT 254
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARM--------TGHQQLINC-----VEFSPDGR 473
+G L++ D + LWN + +L G + ++C F P G
Sbjct: 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314
Query: 474 IIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVW 529
IA ++ G+ IT L+GH + V + S+ + L SGS D + W
Sbjct: 315 TIA---------VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 122/303 (40%), Gaps = 46/303 (15%)
Query: 90 KQAVFQVRPVTRCTSSMPG-HAEAVISVKFSPNGRSL-ASGSGDTTVRFWDVTT-QTP-L 145
+Q+ + + V P H +V +V++ P+ + S S D T++ WD T QT +
Sbjct: 78 RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
Query: 146 FKCEGTPYLFYVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPG 205
F E T Y +++ P+ T + V K + ++ + C+ + G
Sbjct: 138 FNFEETVYSHHMS------------PVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQG 184
Query: 206 HAEAVISVKFSPN-GRSLASGSGDTTVRFWDV----------------TTQTPLFKCEGH 248
H + +++V +SP LA+ S D+ V+ WDV +Q H
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244
Query: 249 KHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGK----QIGQPMRGHKQWITALSWEPFH 304
V + ++ D L++ + + W+SS G+ G+ K+ + F
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL------KFT 298
Query: 305 LNHQC-RRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS-GLIYSASQDRTI 362
++ C F I ++ V + + +L H ++V C + + +YS S+D I
Sbjct: 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358
Query: 363 KVW 365
W
Sbjct: 359 LAW 361
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 47/77 (61%)
Query: 455 RMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDS 514
++TGH++ + V+++ +G ++ S S D S +W G+ + TL GH ++ + +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 515 RLLVSGSADSTLKVWNM 531
+ V+GSAD ++K+W++
Sbjct: 87 KYCVTGSADYSIKLWDV 103
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 116/327 (35%), Gaps = 56/327 (17%)
Query: 203 MPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSK 262
+ GH + VK++ G L S S D++ W L +GH + I +K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 263 QLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKD---- 318
V+G + I WD S G+ + W + + + + C + + D
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVA-------TWKSPVPVKRVEFS-PCGNYFLAILDNVMK 139
Query: 319 --GAIRIWDVILSQCVRVLTSHTR-------------SVTCIRWGGSG-LIYSASQDRTI 362
G+I I+++ LT + + T W G I + +D I
Sbjct: 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199
Query: 363 KVWRASDGV-MCRTLEGHAHWVNTLALSTDYLMRVEAT-STGGFKYDPANPEESSKHALA 420
+ S+ +++ H ++ + S D + ++ T F D S+ L
Sbjct: 200 SKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV-----STLQVLK 254
Query: 421 KYQAQCPEGEKLVSGSDDFTLFLWNPEKE---------------------KKSLARMTGH 459
KY+ CP +++ +F + E + ++ + R+ GH
Sbjct: 255 KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314
Query: 460 QQLINCVEFSPDGRIIASASFDKSIKL 486
+N V SP G AS D I+L
Sbjct: 315 FGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/314 (18%), Positives = 121/314 (38%), Gaps = 78/314 (24%)
Query: 335 LTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLAL----- 388
LT H R +T +++ G L++S S+D + VW + +G TL+GH + ++ +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 389 -----STDYLMRVEATSTGG-------------FKYDPA-------------NP------ 411
S DY +++ S G ++ P NP
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 412 ---EESSKHALAKYQAQ-------------------CPEGEKLVSGSDDFTLFLWNPEKE 449
+S+ H L K + +G+ +++G D + ++
Sbjct: 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207
Query: 450 KKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFI----------TTLR 499
+ + + H++ I+ ++FSPD ++S D + L D + + T +
Sbjct: 208 YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVI 267
Query: 500 GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDL---PGHGDEVYAVDWAPDG 556
++ ++ +++ + + SA+ K E+++ GH + V +P G
Sbjct: 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327
Query: 557 EKVASGGKDKVLRL 570
ASGG+D +RL
Sbjct: 328 TSYASGGEDGFIRL 341
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 498 LRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGE 557
L GH + + V ++ + LL S S DS+ VW + L GH ++++D +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 558 KVASGGKDKVLRLW 571
+G D ++LW
Sbjct: 88 YCVTGSADYSIKLW 101
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITK 164
S+ H +++ ++FSP+ + S DT DV+T L K E L T +
Sbjct: 213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL----NTAVIT 268
Query: 165 TLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVTRC----TSSMPGHAEAVISVKFSPNGR 220
L + + L + V + F+ R + + GH + +V SP G
Sbjct: 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328
Query: 221 SLASGSGDTTVRF 233
S ASG D +R
Sbjct: 329 SYASGGEDGFIRL 341
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 500 GHVQAVYMVAWS-SDSRLLVSGSADSTLKVWNMKTK---KIEQDLPGHGDEVYAVDWAPD 555
GH A+ + + D LL+S S D L++WN++T I + GH DEV + D+
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 556 GEKVASGGKDKVLRLWQ 572
GEK+ S G D L+LW+
Sbjct: 209 GEKIMSCGMDHSLKLWR 225
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 107/276 (38%), Gaps = 36/276 (13%)
Query: 101 RCTSSMP-GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC--EGTPYLF-- 155
+C +S+ H + + V+F+ S GD V + + L++C +G L
Sbjct: 44 KCVNSLKEDHNQPLFGVQFN-----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 98
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT-RCTSSMPGHAEAVISVK 214
YV+ D+ + ++ + + + + P+T +C GH A+ +K
Sbjct: 99 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 215 FSPNGRS-LASGSGDTTVRFWDVTTQT--PLF-KCEGHKHWVLCIAWSPDSKQLVSGCKN 270
F P + L S S D +R W++ T T +F EGH+ VL + ++++S +
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 218
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDVILSQ 330
+ W ++ + + + ++ N R F S I D
Sbjct: 219 HSLKLWRINSKRMMNAIKESYD----------YNPNKTNRPFISQ----KIHFPDFSTRD 264
Query: 331 CVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWR 366
H V C+RW G LI S S + I W+
Sbjct: 265 I------HRNYVDCVRWLGD-LILSKSCENAIVCWK 293
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTL---RGHVQAVY 506
+ + GH IN ++F P D ++ S S D +++LW+ + + GH V
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 507 MVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
+ ++S D +LK+W + +K++
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 312 FASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASD 369
A +G G IRI + I QC++ H ++ +++ L+ S S+D +++W
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Query: 370 GVMCRTL---EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ EGH V LS DY + E + G H+L ++
Sbjct: 184 DTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGM-----------DHSLKLWRINS 228
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKK----------SLARMTGHQQLINCVEFSPDGRIIA 476
+ S D+ NP K + + H+ ++CV + G +I
Sbjct: 229 KRMMNAIKESYDY-----NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 281
Query: 477 SASFDKSIKLWD-GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSAD-STLKVWNMK 532
S S + +I W G++ I ++ S+S + + G D S +W M+
Sbjct: 282 SKSCENAIVCWKPGKMEDDIDKIK-----------PSESNVTILGRFDYSQCDIWYMR 328
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 96 VRPVT-RCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQT 143
+ P+T +C GH A+ +KF P + L S S D +R W++ T T
Sbjct: 136 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 185
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 500 GHVQAVYMVAWS-SDSRLLVSGSADSTLKVWNMKTK---KIEQDLPGHGDEVYAVDWAPD 555
GH A+ + + D LL+S S D L++WN++T I + GH DEV + D+
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 556 GEKVASGGKDKVLRLWQ 572
GEK+ S G D L+LW+
Sbjct: 172 GEKIMSCGMDHSLKLWR 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 42/279 (15%)
Query: 101 RCTSSMP-GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC--EGTPYLF-- 155
+C +S+ H + + V+F+ S GD V + + L++C +G L
Sbjct: 7 KCVNSLKEDHNQPLFGVQFN-----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT-RCTSSMPGHAEAVISVK 214
YV+ D+ + ++ + + + + P+T +C GH A+ +K
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 215 FSPNGRS-LASGSGDTTVRFWDVTTQT--PLF-KCEGHKHWVLCIAWSPDSKQLVSGCKN 270
F P + L S S D +R W++ T T +F EGH+ VL + ++++S +
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG---KDGAIRIWDVI 327
+ W ++ + + + ++ N R F S D + R D+
Sbjct: 182 HSLKLWRINSKRMMNAIKESYD----------YNPNKTNRPFISQKIHFPDFSTR--DI- 228
Query: 328 LSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWR 366
H V C+RW G LI S S + I W+
Sbjct: 229 ----------HRNYVDCVRWLGD-LILSKSCENAIVCWK 256
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTL---RGHVQAVY 506
+ + GH IN ++F P D ++ S S D +++LW+ + + GH V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 507 MVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
+ ++S D +LK+W + +K++
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 312 FASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASD 369
A +G G IRI + I QC++ H ++ +++ L+ S S+D +++W
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 370 GVMCRTL---EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ EGH V LS DY + E + G H+L ++
Sbjct: 147 DTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGM-----------DHSLKLWRINS 191
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKK----------SLARMTGHQQLINCVEFSPDGRIIA 476
+ S D+ NP K + + H+ ++CV + G +I
Sbjct: 192 KRMMNAIKESYDY-----NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 244
Query: 477 SASFDKSIKLWD-GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSAD-STLKVWNMK 532
S S + +I W G++ I ++ S+S + + G D S +W M+
Sbjct: 245 SKSCENAIVCWKPGKMEDDIDKIK-----------PSESNVTILGRFDYSQCDIWYMR 291
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 96 VRPVT-RCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQT 143
+ P+T +C GH A+ +KF P + L S S D +R W++ T T
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 500 GHVQAVYMVAWS-SDSRLLVSGSADSTLKVWNMKTK---KIEQDLPGHGDEVYAVDWAPD 555
GH A+ + + D LL+S S D L++WN++T I + GH DEV + D+
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 556 GEKVASGGKDKVLRLWQ 572
GEK+ S G D L+LW+
Sbjct: 172 GEKIMSCGMDHSLKLWR 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 42/279 (15%)
Query: 101 RCTSSMP-GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC--EGTPYLF-- 155
+C +S+ H + + V+F+ S GD V + + L++C +G L
Sbjct: 7 KCVNSLKEDHNQPLFGVQFN-----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT-RCTSSMPGHAEAVISVK 214
YV+ D+ + ++ + + + + P+T +C GH A+ +K
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 215 FSPNGRS-LASGSGDTTVRFWDVTTQT--PLF-KCEGHKHWVLCIAWSPDSKQLVSGCKN 270
F P + L S S D +R W++ T T +F EGH+ VL + ++++S +
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG---KDGAIRIWDVI 327
+ W ++ + + + ++ N R F S D + R D+
Sbjct: 182 HSLKLWRINSKRMMNAIKESYD----------YNPNKTNRPFISQKIHFPDFSTR--DI- 228
Query: 328 LSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWR 366
H V C+RW G LI S S + I W+
Sbjct: 229 ----------HRNYVDCVRWLGD-LILSKSCENAIVCWK 256
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTL---RGHVQAVY 506
+ + GH IN ++F P D ++ S S D +++LW+ + + GH V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 507 MVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
+ ++S D +LK+W + +K++
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 312 FASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASD 369
A +G G IRI + I QC++ H ++ +++ L+ S S+D +++W
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 370 GVMCRTL---EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ EGH V LS DY + E + G H+L ++
Sbjct: 147 DTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGM-----------DHSLKLWRINS 191
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKK----------SLARMTGHQQLINCVEFSPDGRIIA 476
+ S D+ NP K + + H+ ++CV + G +I
Sbjct: 192 KRMMNAIKESYDY-----NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 244
Query: 477 SASFDKSIKLWD-GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSAD-STLKVWNMK 532
S S + +I W G++ I ++ S+S + + G D S +W M+
Sbjct: 245 SKSCENAIVCWKPGKMEDDIDKIK-----------PSESNVTILGRFDYSQCDIWYMR 291
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 96 VRPVT-RCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQT 143
+ P+T +C GH A+ +KF P + L S S D +R W++ T T
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 500 GHVQAVYMVAWS-SDSRLLVSGSADSTLKVWNMKTK---KIEQDLPGHGDEVYAVDWAPD 555
GH A+ + + D LL+S S D L++WN++T I + GH DEV + D+
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 556 GEKVASGGKDKVLRLWQ 572
GEK+ S G D L+LW+
Sbjct: 173 GEKIMSCGMDHSLKLWR 189
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 42/279 (15%)
Query: 101 RCTSSMP-GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC--EGTPYLF-- 155
+C +S+ H + + V+F+ S GD V + + L++C +G L
Sbjct: 8 KCVNSLKEDHNQPLFGVQFN-----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 62
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT-RCTSSMPGHAEAVISVK 214
YV+ D+ + ++ + + + + P+T +C GH A+ +K
Sbjct: 63 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 215 FSPNGRS-LASGSGDTTVRFWDVTTQT--PLF-KCEGHKHWVLCIAWSPDSKQLVSGCKN 270
F P + L S S D +R W++ T T +F EGH+ VL + ++++S +
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG---KDGAIRIWDVI 327
+ W ++ + + + ++ N R F S D + R D+
Sbjct: 183 HSLKLWRINSKRMMNAIKESYD----------YNPNKTNRPFISQKIHFPDFSTR--DI- 229
Query: 328 LSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWR 366
H V C+RW G LI S S + I W+
Sbjct: 230 ----------HRNYVDCVRWLGD-LILSKSCENAIVCWK 257
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTL---RGHVQAVY 506
+ + GH IN ++F P D ++ S S D +++LW+ + + GH V
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 507 MVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
+ ++S D +LK+W + +K++
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 312 FASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASD 369
A +G G IRI + I QC++ H ++ +++ L+ S S+D +++W
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Query: 370 GVMCRTL---EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ EGH V LS DY + E + G H+L ++
Sbjct: 148 DTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGM-----------DHSLKLWRINS 192
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKK----------SLARMTGHQQLINCVEFSPDGRIIA 476
+ S D+ NP K + + H+ ++CV + G +I
Sbjct: 193 KRMMNAIKESYDY-----NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245
Query: 477 SASFDKSIKLWD-GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSAD-STLKVWNMK 532
S S + +I W G++ I ++ S+S + + G D S +W M+
Sbjct: 246 SKSCENAIVCWKPGKMEDDIDKIK-----------PSESNVTILGRFDYSQCDIWYMR 292
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 96 VRPVT-RCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQT 143
+ P+T +C GH A+ +KF P + L S S D +R W++ T T
Sbjct: 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 500 GHVQAVYMVAWS-SDSRLLVSGSADSTLKVWNMKTK---KIEQDLPGHGDEVYAVDWAPD 555
GH A+ + + D LL+S S D L++WN++T I + GH DEV + D+
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 556 GEKVASGGKDKVLRLWQ 572
GEK+ S G D L+LW+
Sbjct: 168 GEKIMSCGMDHSLKLWR 184
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 88/417 (21%), Positives = 153/417 (36%), Gaps = 90/417 (21%)
Query: 101 RCTSSMP-GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKC--EGTPYLF-- 155
+C +S+ H + + V+F+ S GD V + + L++C +G L
Sbjct: 3 KCVNSLKEDHNQPLFGVQFN-----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 57
Query: 156 YVNETEITKTLADVLPLDTLNTEEVVDIVYQKQAVFQVRPVT-RCTSSMPGHAEAVISVK 214
YV+ D+ + ++ + + + + P+T +C GH A+ +K
Sbjct: 58 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 117
Query: 215 FSPNGRS-LASGSGDTTVRFWDVTTQT--PLF-KCEGHKHWVLCIAWSPDSKQLVSGCKN 270
F P + L S S D +R W++ T T +F EGH+ VL + ++++S +
Sbjct: 118 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 177
Query: 271 GVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSG---KDGAIRIWDVI 327
+ W ++ + + + ++ N R F S D + R D+
Sbjct: 178 HSLKLWRINSKRMMNAIKESYD----------YNPNKTNRPFISQKIHFPDFSTR--DI- 224
Query: 328 LSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLA 387
H V C+RW G LI S S + I W+ G M +
Sbjct: 225 ----------HRNYVDCVRWLGD-LILSKSCENAIVCWKP--GKMEDDI----------- 260
Query: 388 LSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQ-AQCPE----------GEKLVSGS 436
D P ES+ L ++ +QC + L G+
Sbjct: 261 -------------------DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 301
Query: 437 DDFTLFLWNPEKEKKSLAR---MTGHQ--QLINCVEFSPDGRIIASASFDKSIKLWD 488
L++W+ E E A+ +T H+ I FS D I+ + D SI WD
Sbjct: 302 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 358
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 451 KSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKLWDGRIGKFITTL---RGHVQAVY 506
+ + GH IN ++F P D ++ S S D +++LW+ + + GH V
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 507 MVAWSSDSRLLVSGSADSTLKVWNMKTKKI 536
+ ++S D +LK+W + +K++
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 312 FASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASD 369
A +G G IRI + I QC++ H ++ +++ L+ S S+D +++W
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
Query: 370 GVMCRTL---EGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAKYQAQC 426
+ EGH V LS DY + E + G H+L ++
Sbjct: 143 DTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGM-----------DHSLKLWRINS 187
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKK----------SLARMTGHQQLINCVEFSPDGRIIA 476
+ S D+ NP K + + H+ ++CV + G +I
Sbjct: 188 KRMMNAIKESYDY-----NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 240
Query: 477 SASFDKSIKLWD-GRIGKFITTLRGHVQAVYMVAWSSDSRLLVSGSAD-STLKVWNMK 532
S S + +I W G++ I ++ S+S + + G D S +W M+
Sbjct: 241 SKSCENAIVCWKPGKMEDDIDKIK-----------PSESNVTILGRFDYSQCDIWYMR 287
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 96 VRPVT-RCTSSMPGHAEAVISVKFSPNGRS-LASGSGDTTVRFWDVTTQT 143
+ P+T +C GH A+ +KF P + L S S D +R W++ T T
Sbjct: 95 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 144
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 463 INCVEFSPD---GRIIASASFDKSIKLWDGR-IGKFITTLRG-HVQAVYMVAWSSDSRLL 517
I C+ FSP G + + S+ ++ W+ + G+ I + H V V WS D +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 518 VSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDW--APDGEKVASGGKDKVLRLW 571
+ S D T K+W++ + + Q + H V + W AP+ V +G DK L+ W
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKSLARMTG-HQQLINCVEFSPDGRIIASASFDKSIKLW 487
G L++GS + W + +++ + H + V +S DG + +AS DK+ K+W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 488 DGRIGKFITTLRGHVQAVYMVAW--SSDSRLLVSGSADSTLKVWNMKT 533
D + I + H V + W + + +++GS D TLK W+ ++
Sbjct: 114 DLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 39/195 (20%)
Query: 119 SPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLADVL-PLDTLNT 177
+PN + +GS D T++FWD + P+ + P Y ADV+ P+ + T
Sbjct: 138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LPERCYC---------ADVIYPMAVVAT 187
Query: 178 EEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVK---FSPNGRSLASGSGDTTVRFW 234
E IVYQ + Q R S + V K P G +L S G + +
Sbjct: 188 AERGLIVYQLEN--QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY- 244
Query: 235 DVTTQTPL-----FKCEGHK----------HWVLCIAWSPDSKQLVSGCKNGVIHAWDS- 278
+ P FKC + V IA+ P L + +G WD
Sbjct: 245 -INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303
Query: 279 -----STGKQIGQPM 288
T +Q+ QP+
Sbjct: 304 ARTKLKTSEQLDQPI 318
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 208 EAVISVKFSPN---GRSLASGSGDTTVRFWDV--TTQTPLFKCEGHKHWVLCIAWSPDSK 262
+++ + FSP G L +GS VR W+V + QT + H VL + WS D
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 263 QLVSGCKNGVIHAWDSSTGK--QIGQPMRGHKQWITALSW--EPFHLNHQCRRFASSGKD 318
++ + + WD S+ + QI Q H + + W P N+ C + D
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAP---NYSC--VMTGSWD 150
Query: 319 GAIRIWDVILSQCVRVL 335
++ WD S + VL
Sbjct: 151 KTLKFWDTRSSNPMMVL 167
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 308 QCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWR 366
Q RRF +G I++ D + + +H +T +++ SG + S+SQD +K+W
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 367 ASDGVMCRTLEGHAHWVNTLAL 388
DG RTL GH V +A+
Sbjct: 165 VKDGSNPRTLIGHRATVTDIAI 186
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 29/179 (16%)
Query: 121 NGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL--ADVLPLDT---- 174
N R + +G G+T F V + + +G +LF + +K L AD +DT
Sbjct: 49 NSRGVDAGKGNT---FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQ 105
Query: 175 -----LNTEE----VVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASG 225
L T E V+D + Q R + + H + +KF P+G +L S
Sbjct: 106 MRRFILGTTEGDIKVLDSNFNLQ-----REIDQA------HVSEITKLKFFPSGEALISS 154
Query: 226 SGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
S D ++ W V + GH+ V IA + ++S +G I W+ TG I
Sbjct: 155 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P GE L+S S D L +W+ K+ + + GH+ + + GR + SAS D +I+L
Sbjct: 146 PSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Query: 487 WDGRIGKFITTLR 499
W+ G I T
Sbjct: 205 WECGTGTTIHTFN 217
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 458 GHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLL 517
H I ++F P G + S+S D +K+W + G TL GH V +A R +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 518 VSGSADSTLKVWNMKT 533
+S S D T+++W T
Sbjct: 194 LSASLDGTIRLWECGT 209
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAI 321
++ + G G I DS+ Q + + H IT L + P SS +D +
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQ-REIDQAHVSEITKLKFFP-----SGEALISSSQDMQL 160
Query: 322 RIWDVILSQCVRVLTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWRASDGVMCRTL---E 377
+IW V R L H +VT I G + SAS D TI++W G T E
Sbjct: 161 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 220
Query: 378 GHAHWVNTLAL 388
VN++AL
Sbjct: 221 NPHDGVNSIAL 231
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 454 ARMTGHQQLINCVEFSPDGRIIASASF------------------DKSIKLWDGRIGKFI 495
AR+ GH L N + +++ A + + IK+ D
Sbjct: 71 ARLDGHDFLFNTI-IRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 129
Query: 496 TTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPD 555
+ HV + + + L+S S D LK+W++K + L GH V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 556 GEKVASGGKDKVLRLWQ 572
G V S D +RLW+
Sbjct: 190 GRNVLSASLDGTIRLWE 206
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPL 145
++ GH V + GR++ S S D T+R W+ T T +
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDV 139
H + +KF P+G +L S S D ++ W V
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 308 QCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSG-LIYSASQDRTIKVWR 366
Q RRF +G I++ D + + +H +T +++ SG + S+SQD +K+W
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 367 ASDGVMCRTLEGHAHWVNTLAL 388
DG RTL GH V +A+
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAI 189
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 29/179 (16%)
Query: 121 NGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTL--ADVLPLDT---- 174
N R + +G G+T F V + + +G +LF + +K L AD +DT
Sbjct: 52 NSRGVDAGKGNT---FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQ 108
Query: 175 -----LNTEE----VVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASG 225
L T E V+D + Q R + + H + +KF P+G +L S
Sbjct: 109 MRRFILGTTEGDIKVLDSNFNLQ-----REIDQA------HVSEITKLKFFPSGEALISS 157
Query: 226 SGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
S D ++ W V + GH+ V IA + ++S +G I W+ TG I
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 427 PEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKSIKL 486
P GE L+S S D L +W+ K+ + + GH+ + + GR + SAS D +I+L
Sbjct: 149 PSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Query: 487 WDGRIGKFITTLR 499
W+ G I T
Sbjct: 208 WECGTGTTIHTFN 220
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 458 GHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRLL 517
H I ++F P G + S+S D +K+W + G TL GH V +A R +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 518 VSGSADSTLKVWNMKT 533
+S S D T+++W T
Sbjct: 197 LSASLDGTIRLWECGT 212
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 262 KQLVSGCKNGVIHAWDSSTGKQIGQPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAI 321
++ + G G I DS+ Q + + H IT L + P SS +D +
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQ-REIDQAHVSEITKLKFFP-----SGEALISSSQDMQL 163
Query: 322 RIWDVILSQCVRVLTSHTRSVTCIRWGGSGL-IYSASQDRTIKVWRASDGVMCRTL---E 377
+IW V R L H +VT I G + SAS D TI++W G T E
Sbjct: 164 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223
Query: 378 GHAHWVNTLAL 388
VN++AL
Sbjct: 224 NPHDGVNSIAL 234
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 454 ARMTGHQQLINCVEFSPDGRIIASASF------------------DKSIKLWDGRIGKFI 495
AR+ GH L N + +++ A + + IK+ D
Sbjct: 74 ARLDGHDFLFNTI-IRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132
Query: 496 TTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPD 555
+ HV + + + L+S S D LK+W++K + L GH V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 556 GEKVASGGKDKVLRLWQ 572
G V S D +RLW+
Sbjct: 193 GRNVLSASLDGTIRLWE 209
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 105 SMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPL 145
++ GH V + GR++ S S D T+R W+ T T +
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/310 (19%), Positives = 110/310 (35%), Gaps = 62/310 (20%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLF--KCEGHKHWVLCIAWS-PDS 261
H E + G+ LA+ S D T++ ++V +T GH+ V + W+ P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 262 KQLVSGCK-NGVIHAWDSSTGKQIGQPMRG-HKQWITALSWEPFHLNHQCRRFASSGKDG 319
+++ C +G + W G+ + H + ++ W P +S GK
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL--------------IYSASQDRTIKVW 365
+ + + + ++ +H V W + + + D +K+W
Sbjct: 127 VVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 366 R----ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+ A V+ TLEGH+ WV +A S L+R
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-------------------------- 219
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKE----KKSLARMTGHQQLINCVEFSPDGRIIAS 477
L S S D T +W + E KK+L + ++ +S G ++A
Sbjct: 220 --------SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 478 ASFDKSIKLW 487
+ D + LW
Sbjct: 272 SGGDNKVTLW 281
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITTLRGHVQAVYMVAWSSDS 514
H +LI+ G+ +A+ S DK+IK+++ G K I TL GH V+ V W+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 515 --RLLVSGSADSTLKVWNMKTKKIEQDL--PGHGDEVYAVDWAP 554
+L S S D + +W + + Q H V +V WAP
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKS-LARMTGHQQLINCVEFSPD--GRIIASASFDKSIK 485
G L S S D + +W E + S +A H +N V+++P G ++ AS D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 486 LWDGRIGKFIT--TLRGHVQAVYMVAWS-------------SDSRLLVSGSADSTLKVW- 529
+ + + + + H V +W+ +SR V+G AD+ +K+W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 530 ---NMKTKKIEQDLPGHGDEVYAVDWAPD---GEKVASGGKDKVLRLW 571
+ +T +E L GH D V V W+P +AS +D+ +W
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 106/301 (35%), Gaps = 68/301 (22%)
Query: 305 LNHQCRRFASSGKDGAIRIWDVI--LSQCVRVLTSHTRSVTCIRWGG---SGLIYSASQD 359
L++ +R A+ D I+I++V + + LT H V + W ++ S S D
Sbjct: 17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 360 RTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHAL 419
+ +W+ +G W + +A+ + V + +Y P
Sbjct: 77 GKVLIWKEENG----------RW-SQIAVHAVHSASVNSVQWAPHEYGPL---------- 115
Query: 420 AKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP--------- 470
LV+ SD + E S + H +N ++P
Sbjct: 116 -----------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 471 ----DGRIIASASFDKSIKLW----DGRIGKFITTLRGHVQAVYMVAWSSDSRL---LVS 519
+ R + D +K+W D + +TL GH V VAWS L L S
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 520 GSADSTLKVWNM--------KTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T +W KT E+ P D ++ W+ G +A G D + LW
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
Query: 572 Q 572
+
Sbjct: 282 K 282
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 495 ITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMK--TKKIEQDLPGHGDEVYAVDW 552
+ H + ++ + L + S+D T+K++ ++ T K+ L GH V+ VDW
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 553 APD--GEKVASGGKDKVLRLWQ 572
A G +AS D + +W+
Sbjct: 62 AHPKFGTILASCSYDGKVLIWK 83
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/310 (19%), Positives = 111/310 (35%), Gaps = 62/310 (20%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTP--LFKCEGHKHWVLCIAWS-PDS 261
H E + G+ LA+ S D T++ ++V +T + GH+ V + W+ P
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 262 KQLVSGCK-NGVIHAWDSSTGKQIGQPMRG-HKQWITALSWEPFHLNHQCRRFASSGKDG 319
+++ C +G + W G+ + H + ++ W P +S GK
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL--------------IYSASQDRTIKVW 365
+ + + + ++ +H V W + + + D +K+W
Sbjct: 129 VVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
Query: 366 R----ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+ A V+ TLEGH+ WV +A S L+R
Sbjct: 188 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-------------------------- 221
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKE----KKSLARMTGHQQLINCVEFSPDGRIIAS 477
L S S D T +W + E KK+L + ++ +S G ++A
Sbjct: 222 --------SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273
Query: 478 ASFDKSIKLW 487
+ D + LW
Sbjct: 274 SGGDNKVTLW 283
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITTLRGHVQAVYMVAWSSD- 513
H +LI+ G+ +A+ S DK+IK+++ G K I TL GH V+ V W+
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 514 -SRLLVSGSADSTLKVWNMKTKKIEQDL--PGHGDEVYAVDWAP 554
+L S S D + +W + + Q H V +V WAP
Sbjct: 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKS-LARMTGHQQLINCVEFSPD--GRIIASASFDKSIK 485
G L S S D + +W E + S +A H +N V+++P G ++ AS D +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 486 LWDGRIGKFIT--TLRGHVQAVYMVAWS-------------SDSRLLVSGSADSTLKVW- 529
+ + + + + H V +W+ +SR V+G AD+ +K+W
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188
Query: 530 ---NMKTKKIEQDLPGHGDEVYAVDWAPD---GEKVASGGKDKVLRLW 571
+ +T +E L GH D V V W+P +AS +D+ +W
Sbjct: 189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 105/301 (34%), Gaps = 68/301 (22%)
Query: 305 LNHQCRRFASSGKDGAIRIWDVI--LSQCVRVLTSHTRSVTCIRWGG---SGLIYSASQD 359
L++ +R A+ D I+I++V + + LT H V + W ++ S S D
Sbjct: 19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 360 RTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHAL 419
+ +W+ +G + +A+ + V + +Y P
Sbjct: 79 GKVLIWKEENGRWSQ-----------IAVHAVHSASVNSVQWAPHEYGPL---------- 117
Query: 420 AKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP--------- 470
LV+ SD + E S + H +N ++P
Sbjct: 118 -----------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166
Query: 471 ----DGRIIASASFDKSIKLW----DGRIGKFITTLRGHVQAVYMVAWSSDSRL---LVS 519
+ R + D +K+W D + +TL GH V VAWS L L S
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 520 GSADSTLKVWNM--------KTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T +W KT E+ P D ++ W+ G +A G D + LW
Sbjct: 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 283
Query: 572 Q 572
+
Sbjct: 284 K 284
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 492 GKFITTLRGHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMK--TKKIEQDLPGHGDEVYA 549
G + H + ++ + L + S+D T+K++ ++ T K+ L GH V+
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 550 VDWAPD--GEKVASGGKDKVLRLWQ 572
VDWA G +AS D + +W+
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWK 85
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/310 (19%), Positives = 110/310 (35%), Gaps = 62/310 (20%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLF--KCEGHKHWVLCIAWS-PDS 261
H E + G+ LA+ S D T++ ++V +T GH+ V + W+ P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 262 KQLVSGCK-NGVIHAWDSSTGKQIGQPMRG-HKQWITALSWEPFHLNHQCRRFASSGKDG 319
+++ C +G + W G+ + H + ++ W P +S GK
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL--------------IYSASQDRTIKVW 365
+ + + + ++ +H V W + + + D +K+W
Sbjct: 127 VVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 366 R----ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+ A V+ TLEGH+ WV +A S L+R
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-------------------------- 219
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKE----KKSLARMTGHQQLINCVEFSPDGRIIAS 477
L S S D T +W + E KK+L + ++ +S G ++A
Sbjct: 220 --------SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 478 ASFDKSIKLW 487
+ D + LW
Sbjct: 272 SGGDNKVTLW 281
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITTLRGHVQAVYMVAWSSD- 513
H +LI+ G+ +A+ S DK+IK+++ G K I TL GH V+ V W+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 514 -SRLLVSGSADSTLKVWNMKTKKIEQDL--PGHGDEVYAVDWAP 554
+L S S D + +W + + Q H V +V WAP
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKS-LARMTGHQQLINCVEFSPD--GRIIASASFDKSIK 485
G L S S D + +W E + S +A H +N V+++P G ++ AS D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 486 LWD----GRIGKFITTLRGHVQAVYMVAWS-------------SDSRLLVSGSADSTLKV 528
+ + G I + H V +W+ +SR V+G AD+ +K+
Sbjct: 127 VVEFKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 529 W----NMKTKKIEQDLPGHGDEVYAVDWAPD---GEKVASGGKDKVLRLW 571
W + +T +E L GH D V V W+P +AS +D+ +W
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 105/301 (34%), Gaps = 68/301 (22%)
Query: 305 LNHQCRRFASSGKDGAIRIWDVI--LSQCVRVLTSHTRSVTCIRWGG---SGLIYSASQD 359
L++ +R A+ D I+I++V + + LT H V + W ++ S S D
Sbjct: 17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 360 RTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHAL 419
+ +W+ +G + +A+ + V + +Y P
Sbjct: 77 GKVLIWKEENGRWSQ-----------IAVHAVHSASVNSVQWAPHEYGPL---------- 115
Query: 420 AKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP--------- 470
LV+ SD + E S + H +N ++P
Sbjct: 116 -----------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 471 ----DGRIIASASFDKSIKLW----DGRIGKFITTLRGHVQAVYMVAWSSDSRL---LVS 519
+ R + D +K+W D + +TL GH V VAWS L L S
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 520 GSADSTLKVWNM--------KTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T +W KT E+ P D ++ W+ G +A G D + LW
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
Query: 572 Q 572
+
Sbjct: 282 K 282
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/310 (18%), Positives = 110/310 (35%), Gaps = 62/310 (20%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLF--KCEGHKHWVLCIAWS-PDS 261
H E + G+ +A+ S D T++ ++V +T GH+ V + W+ P
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 262 KQLVSGCK-NGVIHAWDSSTGKQIGQPMRG-HKQWITALSWEPFHLNHQCRRFASSGKDG 319
+++ C +G + W G+ + H + ++ W P +S GK
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL--------------IYSASQDRTIKVW 365
+ + + + ++ +H V W + + + D +K+W
Sbjct: 127 VVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 366 R----ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+ A V+ TLEGH+ WV +A S L+R
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-------------------------- 219
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKE----KKSLARMTGHQQLINCVEFSPDGRIIAS 477
+ S S D T +W + E KK+L + ++ +S G ++A
Sbjct: 220 --------SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 478 ASFDKSIKLW 487
+ D + LW
Sbjct: 272 SGGDNKVTLW 281
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITTLRGHVQAVYMVAWSSD- 513
H ++I+ G+ +A+ S DK+IK+++ G K I TL GH V+ V W+
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 514 -SRLLVSGSADSTLKVWNMKTKKIEQDL--PGHGDEVYAVDWAP 554
+L S S D + +W + + Q H V +V WAP
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKS-LARMTGHQQLINCVEFSPD--GRIIASASFDKSIK 485
G L S S D + +W E + S +A H +N V+++P G ++ AS D +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 486 LWD----GRIGKFITTLRGHVQAVYMVAWS-------------SDSRLLVSGSADSTLKV 528
+ + G I + H V +W+ +SR V+G AD+ +K+
Sbjct: 127 VVEFKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 529 W----NMKTKKIEQDLPGHGDEVYAVDWAPD---GEKVASGGKDKVLRLW 571
W + +T +E L GH D V V W+P +AS +D+ +W
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 105/301 (34%), Gaps = 68/301 (22%)
Query: 305 LNHQCRRFASSGKDGAIRIWDVI--LSQCVRVLTSHTRSVTCIRWGG---SGLIYSASQD 359
+++ +R A+ D I+I++V + + LT H V + W ++ S S D
Sbjct: 17 MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 360 RTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHAL 419
+ +W+ +G + +A+ + V + +Y P
Sbjct: 77 GKVMIWKEENGRWSQ-----------IAVHAVHSASVNSVQWAPHEYGPM---------- 115
Query: 420 AKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP--------- 470
LV+ SD + E S + H +N ++P
Sbjct: 116 -----------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 471 ----DGRIIASASFDKSIKLW----DGRIGKFITTLRGHVQAVYMVAWSSDSRL---LVS 519
+ R + D +K+W D + +TL GH V VAWS L + S
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 520 GSADSTLKVWNM--------KTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
S D T +W KT E+ P D ++ W+ G +A G D + LW
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
Query: 572 Q 572
+
Sbjct: 282 K 282
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 457 TGHQQLINCVEFSPDGRI-IASAS---FDKSIKLWDGRIGK--FITTLRGHVQAVYMVAW 510
+G +Q ++ VE+ P +A+A+ D SI +WD R T +GH + + + W
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
Query: 511 -SSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDG 556
D LL+S D+T+ +WN ++ + P G+ + +AP+
Sbjct: 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA 317
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 426 CPEGEKLV-SGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPDG-RIIASASFDKS 483
C + E L+ S D T+ LWNPE ++ L++ +F+P+ + A ASFD
Sbjct: 271 CHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329
Query: 484 IKL 486
I++
Sbjct: 330 IEV 332
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 103/281 (36%), Gaps = 66/281 (23%)
Query: 74 PLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--------------------SMPGHAEAV 113
P D+ + + V D+VY F R V C+S S H ++
Sbjct: 3 PFDSGHDDLVHDVVYD----FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 58
Query: 114 ISVKF-SPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLADVLP 171
+++ + SP GR +AS S D TV+ W+ +C G +
Sbjct: 59 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQE--ECSGRRWN----------------K 100
Query: 172 LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTV 231
L TLN K +++ V+ P H ++ + L + +
Sbjct: 101 LCTLND--------SKGSLYSVKFA-------PAHLGLKLACLGNDGILRLYDALEPSDL 145
Query: 232 RFWDVTTQTPLFKCEGHKHWV--LCIAWSPD----SKQLVSGCKNGVIHAWDSSTGKQIG 285
R W +T++ + H C++W P K VS + +I+ +
Sbjct: 146 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 205
Query: 286 QPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
+ GHK I ++SW P + + A+ KDG IRI+ +
Sbjct: 206 AKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKI 245
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 66/291 (22%)
Query: 337 SHTRSVTCIRWGG---SGLIYSASQDRTIKVWRA--------------------SDGVMC 373
+H S+ I W +I SAS D+T+K+W S G +
Sbjct: 53 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY 112
Query: 374 RTLEGHAHWVNTLA-LSTDYLMRVEATSTGGFKYDPANPEE----------------SSK 416
AH LA L D ++R+ YD P + +
Sbjct: 113 SVKFAPAHLGLKLACLGNDGILRL---------YDALEPSDLRSWTLTSEMKVLSIPPAN 163
Query: 417 HALAKY-QAQCPEG---EKL-VSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPD 471
H + + + CP EKL VS + ++ + + A++ GH+ LI + ++P
Sbjct: 164 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 223
Query: 472 -GR---IIASASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADST 525
GR +IA+ D I+++ +I + ++ L + M S+D + G +DS
Sbjct: 224 IGRWYQLIATGCKDGRIRIF--KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSN 281
Query: 526 LKVWNMKTKKIEQDL----PGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
+ ++ +L H EV++V W G ++S G D +RLW+
Sbjct: 282 TEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 332
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 134/379 (35%), Gaps = 112/379 (29%)
Query: 171 PLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--------------------SMPGHAEAV 210
P D+ + + V D+VY F R V C+S S H ++
Sbjct: 3 PFDSGHDDLVHDVVYD----FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 58
Query: 211 ISVKF-SPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLC-----------IAW 257
+++ + SP GR +AS S D TV+ W+ +C G + LC + +
Sbjct: 59 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQE--ECSGRRWNKLCTLNDSKGSLYSVKF 116
Query: 258 SPDSKQLVSGC--KNGVIHAWDS------------STGKQIGQPMRGHKQWITALSWEPF 303
+P L C +G++ +D+ S K + P H Q LSW P
Sbjct: 117 APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 176
Query: 304 HLNHQCRRFASS----------GKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS--- 350
+ + + A S GKDG + + L H + I W S
Sbjct: 177 RFSPE--KLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSISWAPSIGR 226
Query: 351 --GLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDP 408
LI + +D I++++ ++ + E N S D M + S
Sbjct: 227 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD------- 279
Query: 409 ANPEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEF 468
+N EE K + Q +L+S DD +W+ V +
Sbjct: 280 SNTEE-------KAELQSNLQVELLSEHDDHNGEVWS--------------------VSW 312
Query: 469 SPDGRIIASASFDKSIKLW 487
+ G I++SA D ++LW
Sbjct: 313 NLTGTILSSAGDDGKVRLW 331
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 500 GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLP----GHGDEVYAVDWA-P 554
GH V+ V + R + + S+D +KV+ + +L H + A+DWA P
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 555 D-GEKVASGGKDKVLRLWQ 572
+ G +AS DK ++LW+
Sbjct: 67 EYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 103/281 (36%), Gaps = 66/281 (23%)
Query: 74 PLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--------------------SMPGHAEAV 113
P D+ + + V D+VY F R V C+S S H ++
Sbjct: 5 PFDSGHDDLVHDVVYD----FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 60
Query: 114 ISVKF-SPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLADVLP 171
+++ + SP GR +AS S D TV+ W+ +C G +
Sbjct: 61 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQE--ECSGRRWN----------------K 102
Query: 172 LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTV 231
L TLN K +++ V+ P H ++ + L + +
Sbjct: 103 LCTLND--------SKGSLYSVKFA-------PAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 232 RFWDVTTQTPLFKCEGHKHWV--LCIAWSPD----SKQLVSGCKNGVIHAWDSSTGKQIG 285
R W +T++ + H C++W P K VS + +I+ +
Sbjct: 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207
Query: 286 QPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
+ GHK I ++SW P + + A+ KDG IRI+ +
Sbjct: 208 AKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKI 247
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 66/291 (22%)
Query: 337 SHTRSVTCIRWGG---SGLIYSASQDRTIKVWRA--------------------SDGVMC 373
+H S+ I W +I SAS D+T+K+W S G +
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY 114
Query: 374 RTLEGHAHWVNTLA-LSTDYLMRVEATSTGGFKYDPANPEE----------------SSK 416
AH LA L D ++R+ YD P + +
Sbjct: 115 SVKFAPAHLGLKLACLGNDGILRL---------YDALEPSDLRSWTLTSEMKVLSIPPAN 165
Query: 417 HALAKY-QAQCPE---GEKL-VSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPD 471
H + + + CP EKL VS + ++ + + A++ GH+ LI + ++P
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 472 -GR---IIASASFDKSIKLWDGRIGKFITTLRGH--VQAVYMVAWSSDSRLLVSGSADST 525
GR +IA+ D I+++ +I + ++ L + M S+D + G +DS
Sbjct: 226 IGRWYQLIATGCKDGRIRIF--KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSN 283
Query: 526 LKVWNMKTKKIEQDL----PGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
+ ++ +L H EV++V W G ++S G D +RLW+
Sbjct: 284 TEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 133/377 (35%), Gaps = 108/377 (28%)
Query: 171 PLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--------------------SMPGHAEAV 210
P D+ + + V D+VY F R V C+S S H ++
Sbjct: 5 PFDSGHDDLVHDVVYD----FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 60
Query: 211 ISVKF-SPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLC-----------IAW 257
+++ + SP GR +AS S D TV+ W+ +C G + LC + +
Sbjct: 61 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQE--ECSGRRWNKLCTLNDSKGSLYSVKF 118
Query: 258 SPDSKQLVSGC--KNGVIHAWDS------------STGKQIGQPMRGHKQWITALSWEPF 303
+P L C +G++ +D+ S K + P H Q LSW P
Sbjct: 119 APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178
Query: 304 HLNHQCRRFAS--------SGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS----- 350
+ + ++ GKDG + + L H + I W S
Sbjct: 179 RFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSISWAPSIGRWY 230
Query: 351 GLIYSASQDRTIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPAN 410
LI + +D I++++ ++ + E N S D M + S +N
Sbjct: 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD-------SN 283
Query: 411 PEESSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP 470
EE K + Q +L+S DD +W+ V ++
Sbjct: 284 TEE-------KAELQSNLQVELLSEHDDHNGEVWS--------------------VSWNL 316
Query: 471 DGRIIASASFDKSIKLW 487
G I++SA D ++LW
Sbjct: 317 TGTILSSAGDDGKVRLW 333
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 500 GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLP----GHGDEVYAVDWA-P 554
GH V+ V + R + + S+D +KV+ + +L H + A+DWA P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 555 D-GEKVASGGKDKVLRLWQ 572
+ G +AS DK ++LW+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 103/281 (36%), Gaps = 66/281 (23%)
Query: 74 PLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--------------------SMPGHAEAV 113
P D+ + + V D+VY F R V C+S S H ++
Sbjct: 5 PFDSGHDDLVHDVVYD----FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 60
Query: 114 ISVKF-SPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLADVLP 171
+++ + SP GR +AS S D TV+ W+ +C G +
Sbjct: 61 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQE--ECSGRRWN----------------K 102
Query: 172 LDTLNTEEVVDIVYQKQAVFQVRPVTRCTSSMPGHAEAVISVKFSPNGRSLASGSGDTTV 231
L TLN K +++ V+ P H ++ + L + +
Sbjct: 103 LCTLND--------SKGSLYSVK-------FAPAHLGLKLACLGNDGILRLYDALEPSDL 147
Query: 232 RFWDVTTQTPLFKCEGHKHWV--LCIAWSPD----SKQLVSGCKNGVIHAWDSSTGKQIG 285
R W +T++ + H C++W P K VS + +I+ +
Sbjct: 148 RSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207
Query: 286 QPMRGHKQWITALSWEPFHLNHQCRRFASSGKDGAIRIWDV 326
+ GHK I ++SW P + + A+ KDG IRI+ +
Sbjct: 208 AKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKI 247
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 500 GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLP----GHGDEVYAVDWA-P 554
GH V+ V + R + + S+D +KV+ + +L H + A+DWA P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 555 D-GEKVASGGKDKVLRLWQ 572
+ G +AS DK ++LW+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 469 SPD-GRIIASASFDKSIKLWD---------GRIGKFITTLRGHVQAVYMVAWS 511
SP+ GRIIASAS+DK++KLW+ GR + TL ++Y V ++
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 66/291 (22%)
Query: 337 SHTRSVTCIRWGG---SGLIYSASQDRTIKVWRA--------------------SDGVMC 373
+H S+ I W +I SAS D+T+K+W S G +
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY 114
Query: 374 RTLEGHAHWVNTLA-LSTDYLMRVEATSTGGFKYDPANPEE----------------SSK 416
AH LA L D ++R+ YD P + +
Sbjct: 115 SVKFAPAHLGLKLACLGNDGILRL---------YDALEPSDLRSWTLTSEXKVLSIPPAN 165
Query: 417 HALAKY-QAQCPE---GEKL-VSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSPD 471
H + + + CP EKL VS + ++ + + A++ GH+ LI + ++P
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 472 -GR---IIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAW--SSDSRLLVSGSADST 525
GR +IA+ D I+++ +I + ++ L + S+D G +DS
Sbjct: 226 IGRWYQLIATGCKDGRIRIF--KITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSN 283
Query: 526 LKVWNMKTKKIEQDL----PGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
+ ++ +L H EV++V W G ++S G D +RLW+
Sbjct: 284 TEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 74/261 (28%)
Query: 171 PLDTLNTEEVVDIVYQKQAVFQVRPVTRCTS--------------------SMPGHAEAV 210
P D+ + + V D+VY F R V C+S S H ++
Sbjct: 5 PFDSGHDDLVHDVVYD----FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 60
Query: 211 ISVKF-SPN-GRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLC-----------IAW 257
+++ + SP GR +AS S D TV+ W+ +C G + LC + +
Sbjct: 61 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQE--ECSGRRWNKLCTLNDSKGSLYSVKF 118
Query: 258 SPDSKQLVSGC--KNGVIHAWDS------------STGKQIGQPMRGHKQWITALSWEPF 303
+P L C +G++ +D+ S K + P H Q LSW P
Sbjct: 119 APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPS 178
Query: 304 HLNHQCRRFAS--------SGKDGAIRIWDVILSQCVRVLTSHTRSVTCIRWGGS----- 350
+ + ++ GKDG + + L H + I W S
Sbjct: 179 RFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRSISWAPSIGRWY 230
Query: 351 GLIYSASQDRTIKVWRASDGV 371
LI + +D I++++ ++ +
Sbjct: 231 QLIATGCKDGRIRIFKITEKL 251
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 206 HAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGHKHWVLCIAWSPDSKQLV 265
H + V ++ +G SG D +V+ WD++ + L H V C+A P +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 266 SGC-KNGVIHAWDSSTGKQIGQPMRGHKQWI-TALSWEPFHLNHQCRRFASSGKDGAIRI 323
C ++G I WD+ K + I T+++W P + FA + G + +
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP----EKDDTFACGDETGNVSL 253
Query: 324 WDVILSQCVRVLTSHTRSVTCIRWG--GSGLIYSASQDRTIKVWRASDGVMCRTLEGHAH 381
++ + H++++T + + S + S S+D T+ V A + R L H
Sbjct: 254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HRD 312
Query: 382 WVNTLALS 389
+V +A S
Sbjct: 313 FVTGVAWS 320
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 428 EGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP-DGRIIASASFDKSIKL 486
+G + VSG DF++ +W+ +K L H +NCV P I S D I L
Sbjct: 150 DGTQAVSGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 487 WDGRIGKFITTL 498
WD R K T +
Sbjct: 209 WDTRKPKPATRI 220
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 501 HVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEVYAVDWAPDGEKV- 559
H V ++ SD VSG D ++KVW++ K + + H EV V P + +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 560 ASGGKDKVLRLW 571
S G+D + LW
Sbjct: 198 LSCGEDGRILLW 209
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/310 (19%), Positives = 111/310 (35%), Gaps = 62/310 (20%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTP--LFKCEGHKHWVLCIAWS-PDS 261
H E + G+ A+ S D T++ ++V +T + GH+ V + W+ P
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 262 KQLVSGCK-NGVIHAWDSSTGKQIGQPMRG-HKQWITALSWEPFHLNHQCRRFASSGKDG 319
+++ C +G + W G+ + H + ++ W P +S GK
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS 126
Query: 320 AIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGL--------------IYSASQDRTIKVW 365
+ + + + ++ +H V W + + + D +K+W
Sbjct: 127 VVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 366 R----ASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALAK 421
+ A V+ TLEGH+ WV +A S L+R
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-------------------------S 220
Query: 422 YQAQCPEGEKLVSGSDDFTLFLWNPEKE----KKSLARMTGHQQLINCVEFSPDGRIIAS 477
Y A S S D T +W + E KK+L + ++ +S G ++A
Sbjct: 221 YXA---------SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 478 ASFDKSIKLW 487
+ D + LW
Sbjct: 272 SGGDNKVTLW 281
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 429 GEKLVSGSDDFTLFLWNPEKEKKS-LARMTGHQQLINCVEFSPD--GRIIASASFDKSIK 485
G L S S D + +W E + S +A H +N V+++P G + AS D +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS 126
Query: 486 LWDGRIGKFIT--TLRGHVQAVYMVAWS-------------SDSRLLVSGSADSTLKVW- 529
+ + + + + H V +W+ +SR V+G AD+ +K+W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 530 ---NMKTKKIEQDLPGHGDEVYAVDWAP 554
+ +T +E L GH D V V W+P
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWD--GRIGKFITTLRGHVQAVYMVAWSSD- 513
H + I+ G+ A+ S DK+IK+++ G K I TL GH V+ V W+
Sbjct: 6 NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 514 -SRLLVSGSADSTLKVWNMKTKKIEQDL--PGHGDEVYAVDWAP 554
+L S S D + +W + + Q H V +V WAP
Sbjct: 66 FGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 103/300 (34%), Gaps = 68/300 (22%)
Query: 306 NHQCRRFASSGKDGAIRIWDVI--LSQCVRVLTSHTRSVTCIRWGG---SGLIYSASQDR 360
++ +R A+ D I+I++V + + LT H V + W ++ S S D
Sbjct: 18 DYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77
Query: 361 TIKVWRASDGVMCRTLEGHAHWVNTLALSTDYLMRVEATSTGGFKYDPANPEESSKHALA 420
+ +W+ +G + +A+ + V + +Y P
Sbjct: 78 KVXIWKEENGRWSQ-----------IAVHAVHSASVNSVQWAPHEYGPX----------- 115
Query: 421 KYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINCVEFSP---------- 470
LV+ SD + E S + H +N ++P
Sbjct: 116 ----------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 471 ---DGRIIASASFDKSIKLW----DGRIGKFITTLRGHVQAVYMVAWSSDSRL---LVSG 520
+ R + D +K+W D + +TL GH V VAWS L S
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASV 225
Query: 521 SADSTLKVWNM--------KTKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLWQ 572
S D T +W KT E+ P D ++ W+ G +A G D + LW+
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWK 282
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 27/157 (17%)
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCE------GHKHWVLCIAWSPD 260
++ SV S G +A+G + TV+ +++T PL+ E + + + + +SP
Sbjct: 196 SQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 254
Query: 261 SKQLVSGCKN---GVIHAWDSSTGKQIG---------QPMRG---HKQWITALSWEPFHL 305
L + G I +++ G++IG Q G H W+ +LS+
Sbjct: 255 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF----- 309
Query: 306 NHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSV 342
N S+G DG +R WDV + + L H +
Sbjct: 310 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 446 PEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKS---IKLWDGRIGKFITTLR--- 499
P +S M + I V+FSP G ++A A S I L++ G+ I +L
Sbjct: 229 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 288
Query: 500 ----------GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEV 547
H V ++++ L S D L+ W++KTK+ L H D++
Sbjct: 289 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLA 167
H+ V+S+ F+ +G +L S D +RFWDV T+ + T + ++ EI +
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-----TTLNMHCDDIEIEE--- 350
Query: 168 DVLPL----DTLNTEEVVDIVYQKQA 189
D+L + D+L V D+ + K+
Sbjct: 351 DILAVDEHGDSLAEPGVFDVKFLKKG 376
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQ 239
H+ V+S+ F+ +G +L S D +RFWDV T+
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 333
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 193 VRPVTRCTS--SMPGHAEAVISVKFSPNGRSLASGSGDTTV------------RFWDVTT 238
+RP+ S SM ++ ++ SVKFSP G LA + R ++
Sbjct: 227 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 286
Query: 239 QTPLFKCE----GHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
T + H WV+ ++++ + L S +G + WD T ++I
Sbjct: 287 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 336
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 27/157 (17%)
Query: 207 AEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCE------GHKHWVLCIAWSPD 260
++ SV S G +A+G + TV+ +++T PL+ E + + + + +SP
Sbjct: 186 SQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244
Query: 261 SKQLVSGCKN---GVIHAWDSSTGKQIG---------QPMRG---HKQWITALSWEPFHL 305
L + G I +++ G++IG Q G H W+ +LS+
Sbjct: 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF----- 299
Query: 306 NHQCRRFASSGKDGAIRIWDVILSQCVRVLTSHTRSV 342
N S+G DG +R WDV + + L H +
Sbjct: 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 446 PEKEKKSLARMTGHQQLINCVEFSPDGRIIASASFDKS---IKLWDGRIGKFITTLR--- 499
P +S M + I V+FSP G ++A A S I L++ G+ I +L
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278
Query: 500 ----------GHVQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQDLPGHGDEV 547
H V ++++ L S D L+ W++KTK+ L H D++
Sbjct: 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 108 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQTPLFKCEGTPYLFYVNETEITKTLA 167
H+ V+S+ F+ +G +L S D +RFWDV T+ + T + ++ EI +
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-----TTLNMHCDDIEIEE--- 340
Query: 168 DVLPL----DTLNTEEVVDIVYQKQA 189
D+L + D+L V D+ + K+
Sbjct: 341 DILAVDEHGDSLAEPGVFDVKFLKKG 366
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 205 GHAEAVISVKFSPNGRSLASGSGDTTVRFWDVTTQ 239
H+ V+S+ F+ +G +L S D +RFWDV T+
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 193 VRPVTRCTS--SMPGHAEAVISVKFSPNGRSLASGSGDTTV------------RFWDVTT 238
+RP+ S SM ++ ++ SVKFSP G LA + R ++
Sbjct: 217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 276
Query: 239 QTPLFKCE----GHKHWVLCIAWSPDSKQLVSGCKNGVIHAWDSSTGKQI 284
T + H WV+ ++++ + L S +G + WD T ++I
Sbjct: 277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITT--LRGHVQAVYMVAWSSDSRLLVSG 520
I+C ++ D IA + + +++ K++ L+ H V V W+ DS +V+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 521 SADSTLKVWNMKTKKIEQDLP--GHGDEVYAVDWAPDGEKVASGGKDKVLRL 570
D VW +K + + L V WAP+ +K A G +V+ +
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 502 VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQ--DLPGHGDEVYAVDWAPDGEKV 559
V+ + AW+ D + + + ++ K Q +L H +V VDWAPD ++
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 67
Query: 560 ASGGKDKVLRLW 571
+ G D+ +W
Sbjct: 68 VTCGTDRNAYVW 79
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 459 HQQLINCVEFSPDGRIIASASFDKSIKLW--DGRIGKFITTLRGHVQAVYMVAWSSDSRL 516
H + V+++PD I + D++ +W GR K + +A V W+ + +
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 517 LVSGSADSTLKVWNMK-------TKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLR 569
GS + + + K I++ + V ++DW P+ +A+G D R
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIR---STVLSLDWHPNSVLLAAGSCDFKCR 167
Query: 570 LW 571
++
Sbjct: 168 IF 169
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 463 INCVEFSPDGRIIASASFDKSIKLWDGRIGKFITT--LRGHVQAVYMVAWSSDSRLLVSG 520
I+C ++ D IA + + +++ K++ L+ H V + W+ DS +V+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 521 SADSTLKVWNMKTKKIEQDLP--GHGDEVYAVDWAPDGEKVASGGKDKVLRL 570
D VW +K + + L V WAP+ +K A G +V+ +
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 502 VQAVYMVAWSSDSRLLVSGSADSTLKVWNMKTKKIEQ--DLPGHGDEVYAVDWAPDGEKV 559
V+ + AW+ D + + + ++ K Q +L H +V +DWAPD ++
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRI 67
Query: 560 ASGGKDKVLRLW 571
+ G D+ +W
Sbjct: 68 VTCGTDRNAYVW 79
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 459 HQQLINCVEFSPDGRIIASASFDKSIKLW--DGRIGKFITTLRGHVQAVYMVAWSSDSRL 516
H + ++++PD I + D++ +W GR K + +A V W+ + +
Sbjct: 51 HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 517 LVSGSADSTLKVWNMK-------TKKIEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLR 569
GS + + + K I++ + V ++DW P+ +A+G D R
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIR---STVLSLDWHPNSVLLAAGSCDFKCR 167
Query: 570 LW 571
++
Sbjct: 168 IF 169
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 400 STGGFKYDPANPEE---SSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARM 456
S G K++P N + SS + Q ++ + SD ++ + + S +
Sbjct: 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRL 516
TG + N + + DG+ +LW+ R+ K T HV W
Sbjct: 226 TG-DNVGNVILLNMDGK-----------ELWNLRMHKKKVT---HVALNPCCDW-----F 265
Query: 517 LVSGSADSTLKVWNMKTKK----IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
L + S D T+K+W+++ + LP H V A ++PDG ++ + + +R++
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 206 HAEAVISVKFSPNGR-SLASGSGDTTVRFWD---VTTQTPLFKCEGHKHWVLCIAWSPDS 261
H + V V +P LA+ S D TV+ WD V + H+H V +SPD
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 262 KQLVSGCKNGVIHA-----WDSSTGKQIGQPMRGHKQWITAL--SWEP 302
+L++ + I WD G I P R H Q +T + +W P
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLG-LIPHPHR-HFQHLTPIKAAWHP 354
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 400 STGGFKYDPANPEE---SSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARM 456
S G K++P N + SS + Q ++ + SD ++ + + S +
Sbjct: 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRL 516
TG + N + + DG+ +LW+ R+ K T HV W
Sbjct: 226 TG-DNVGNVILLNMDGK-----------ELWNLRMHKKKVT---HVALNPCCDW-----F 265
Query: 517 LVSGSADSTLKVWNMKTKK----IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
L + S D T+K+W+++ + LP H V A ++PDG ++ + + +R++
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 206 HAEAVISVKFSPNGR-SLASGSGDTTVRFWD---VTTQTPLFKCEGHKHWVLCIAWSPDS 261
H + V V +P LA+ S D TV+ WD V + H+H V +SPD
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 262 KQLVSGCKNGVIHA-----WDSSTGKQIGQPMRGHKQWITAL--SWEP 302
+L++ + I WD G I P R H Q +T + +W P
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLG-LIPHPHR-HFQHLTPIKAAWHP 354
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 400 STGGFKYDPANPEE---SSKHALAKYQAQCPEGEKLVSGSDDFTLFLWNPEKEKKSLARM 456
S G K++P N + SS + Q ++ + SD ++ + + S +
Sbjct: 167 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 226
Query: 457 TGHQQLINCVEFSPDGRIIASASFDKSIKLWDGRIGKFITTLRGHVQAVYMVAWSSDSRL 516
TG + N + + DG+ +LW+ R+ K T HV W
Sbjct: 227 TG-DNVGNVILLNMDGK-----------ELWNLRMHKKKVT---HVALNPCCDW-----F 266
Query: 517 LVSGSADSTLKVWNMKTKK----IEQDLPGHGDEVYAVDWAPDGEKVASGGKDKVLRLW 571
L + S D T+K+W+++ + LP H V A ++PDG ++ + + +R++
Sbjct: 267 LATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 206 HAEAVISVKFSPNGR-SLASGSGDTTVRFWD---VTTQTPLFKCEGHKHWVLCIAWSPDS 261
H + V V +P LA+ S D TV+ WD V + H+H V +SPD
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 262 KQLVSGCKNGVIHA-----WDSSTGKQIGQPMRGHKQWITAL--SWEP 302
+L++ + I WD G I P R H Q +T + +W P
Sbjct: 310 ARLLTTDQKSEIRVYSASQWDCPLG-LIPHPHR-HFQHLTPIKAAWHP 355
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 102 CTSSMPGHAEAVISVKFSPNGRSLASGSGDTTVRFWDV-TTQTPLFKCEGTPYLFYVNET 160
T++MPG A + + P G +R + QTPL K G P L T
Sbjct: 250 ATATMPGRAVYDYTARLDPQG-----------LRGKRIGLLQTPLLKYRGMPPLIEQAAT 298
Query: 161 EITKTLADVLPLDTLN 176
E+ + A V+P++ N
Sbjct: 299 ELRRAGAVVVPVELPN 314
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 488 DGRIGKFITTLRGHVQAVYMVAWSSDSRL----------LVSGSADSTLKVWNMKTKKIE 537
DGRI F H +AV + + S L +++ ++ LK+W+ + + E
Sbjct: 169 DGRINLFRAD---HKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNE 225
Query: 538 --QDLPGHGDEV--YAVDWAPDGEKV-ASGGKDKVLRLW 571
Q L GD V + VD P+ + V A+GG+D +L +W
Sbjct: 226 PSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 432 LVSGSDDFTLFLWNPEKEKKSLARMTGHQQLINC---------VEFSPDGRIIASASFDK 482
L +G L +WN E + + + GH+++IN E +P+ I + S D
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE---IVTGSRDG 139
Query: 483 SIKLWDGRIGKFITTLRGHVQA---------VYMVAWSSDSRLLVSGSADSTLKVWNMKT 533
++K+WD R VQ + A++ + R++ +G + +K+++++
Sbjct: 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 319 GAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDG 370
GA R+WD +LS+ +V +G Y+ ++ RT+ +W A G
Sbjct: 650 GAFRVWDSVLSE---------EAVLAFEYG-----YATAEPRTLTIWEAQFG 687
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 319 GAIRIWDVILSQCVRVLTSHTRSVTCIRWGGSGLIYSASQDRTIKVWRASDG 370
GA R+WD +LS+ +V +G Y+ ++ RT+ +W A G
Sbjct: 650 GAFRVWDSVLSE---------EAVLAFEYG-----YATAEPRTLTIWEAQFG 687
>pdb|1EMY|A Chain A, Crystal Structure Of Asian Elephant (Elephas Maximus)
Cyano- Met Myoglobin At 1.78 Angstroms Resolution. Phe
29 (B10) Accounts For Its Unusual Ligand Binding
Properties
Length = 153
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 517 LVSGSADSTLKVWNMKTKKIEQDLPGHGDEVY 548
L G + LK W K+E D+PGHG+ V+
Sbjct: 2 LSDGEWELVLKTWG----KVEADIPGHGETVF 29
>pdb|3RGK|A Chain A, Crystal Structure Of Human Myoglobin Mutant K45r
Length = 153
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 517 LVSGSADSTLKVWNMKTKKIEQDLPGHGDEV 547
L G L VW K+E D+PGHG EV
Sbjct: 2 LSDGEWQLVLNVWG----KVEADIPGHGQEV 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,192,415
Number of Sequences: 62578
Number of extensions: 751918
Number of successful extensions: 4219
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 952
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)