BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2677
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 121/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 121/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 5 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 64
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 65 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 124
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 125 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 202 bits (515), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 121/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYANHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 202 bits (515), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 121/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T +QW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 201 bits (512), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LV H +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVAHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEK MSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG QKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQAQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEK MSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 4 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 63
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 64 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 123
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 124 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 165
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEK MSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 5 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 64
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 65 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 124
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 125 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSD SSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDASSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 199 bits (506), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 120/162 (74%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMSRSSG YY N T SQ +RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQAERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 198 bits (504), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 97/162 (59%), Positives = 119/162 (73%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEK MSRSSG YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 5 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 64
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 65 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 124
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG M KPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 125 DLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 117/157 (74%), Gaps = 5/157 (3%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHLLVKHK 59
+LP GWEK MSRSSG YY N T SQW+RP+ + + G P +V+CSHLLVKH
Sbjct: 1 KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHS 60
Query: 60 ESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPF 119
+SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK GDLG F
Sbjct: 61 QSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF 120
Query: 120 GRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 121 SRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 157
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 119/162 (73%), Gaps = 7/162 (4%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMS + G YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMS-ADGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 59
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 60 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 119
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 120 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 161
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 119/162 (73%), Gaps = 8/162 (4%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG-----PEQVQCSHL 54
M DEE LP GWEKRMS +G YY N T SQW+RP+ + + G P +V+CSHL
Sbjct: 1 MADEEKLPPGWEKRMS--NGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 58
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 59 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 118
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 119 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 160
>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
Length = 114
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 91/113 (80%)
Query: 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASK 103
G P +V+CSHLLVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+
Sbjct: 1 GEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQ 60
Query: 104 FSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
FSDCSSAK GDLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 61 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 113
>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
Length = 123
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 91/113 (80%)
Query: 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASK 103
G P +V+CSHLLVKH +SR+P SWR + ITR++EEA+EL+ Y ++I +G+ F LAS+
Sbjct: 10 GEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 104 FSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
FSDCSSAK GDLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 70 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 91/113 (80%)
Query: 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASK 103
G P +V+CSHLLVKH +SR+P SWR + ITR++EEA+EL+ Y ++I +G+ F LAS+
Sbjct: 10 GEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 104 FSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
FSDCSSAK GDLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 70 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122
>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
Length = 177
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 103/172 (59%), Gaps = 22/172 (12%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT-------------------KPAEASGGP 46
LP W R+SRS Y+LN T ES WD P KP G
Sbjct: 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKNNGYKPLVNEDG- 66
Query: 47 EQVQCSHLLVKHKESRKPYSWRD-DNITRSKEEAIELVKSYREQINTGKASFGELASKFS 105
QV+ SHLL+K+ +SRKP SW+ D I+R+++E+I+++K + E+I +G+ ELA+ S
Sbjct: 67 -QVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTES 125
Query: 106 DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
DCSS R GDLG F +G MQ PFE+AAF+L VGE+S + T SGVHI+ RT
Sbjct: 126 DCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177
>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
Length = 139
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 4/115 (3%)
Query: 47 EQVQCSHLLVKHKESRKPYSWRDDN----ITRSKEEAIELVKSYREQINTGKASFGELAS 102
+QV+ SH+L+KH+ SR+ SW+D +T ++E A+E +KS RE I +GKA+F E+A+
Sbjct: 25 DQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVAT 84
Query: 103 KFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
+ SDCSSAKR GDLG FGRG MQKPFE+A ++LKVG++S+ V T+SGVHII RTA
Sbjct: 85 RVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 139
>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1
Length = 115
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 47 EQVQCSHLLVKHKESRKPYSWR--DDNITRSKEEAIELVKSYREQINTGKASFGELASKF 104
E+++ +HLLVK SR P S R D + E+AI+ ++ + ++I +G+ SF E AS+
Sbjct: 3 EKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQR 62
Query: 105 SDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
SDC S GDLG F G M KPFEDA +LK+G++S V T+SG+HII R A
Sbjct: 63 SDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRLA 115
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 23/112 (20%)
Query: 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS- 105
++++CSH+LVK + EA+ + +E++ G+ FG+LA + S
Sbjct: 8 DKIKCSHILVK-----------------KQGEAL----AVQERLKAGE-KFGKLAKELSI 45
Query: 106 DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
D SAKR G LG FGRG M KPFEDAAF L+VGE+SEPV +E G H+I R
Sbjct: 46 DGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKF 104
G + + SH+L+K K + DD + K E I +++++ + FGE+A K
Sbjct: 4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEI------QKEVSKDPSKFGEIAKKE 57
Query: 105 S-DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
S D SAK+ G+LG +G K FE A F LK GE+SE V + G HII
Sbjct: 58 SMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHII 107
>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
Length = 92
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 76 KEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSL 135
KEE + L EQI G A FG+LA K S C S KR GDLG F +G M F+ FS
Sbjct: 12 KEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSC 68
Query: 136 KVGEMSEPVLTESGVHII 153
V E + P+ T+ G HII
Sbjct: 69 PVLEPTGPLHTQFGYHII 86
>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
Length = 93
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 97 FGELASKFSDCSSAKRSGDLGPFGR-GTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILR 155
F +LA ++S SSA + GDLG F + G M + F AAF LK GE+S+PV T+ G HII +
Sbjct: 31 FEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKK 90
Query: 156 T 156
T
Sbjct: 91 T 91
>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
Cj1289 Are Two Structurally-Related Sura-Like Chaperones
In The Human Pathogen Campylobacter Jejuni
Length = 252
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 95 ASFGELASKFS-DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEM-SEPVLTESGVHI 152
A F ELA + S D S + G+LG F + TM KPF DAAF+LK G + + PV T G H+
Sbjct: 143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHV 202
Query: 153 ILR 155
IL+
Sbjct: 203 ILK 205
>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
Length = 96
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 88 EQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTE 147
E++ +G F E+A+++S+ A++ GDLG RG+M PF++AAF+L V M +PV T+
Sbjct: 21 EKLKSG-MRFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTD 78
Query: 148 S------GVHIIL 154
G HII+
Sbjct: 79 PPVKTKFGYHIIM 91
>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14
pdb|3UI5|A Chain A, Crystal Structure Of Human Parvulin 14
pdb|3UI6|A Chain A, 0.89 A Resolution Crystal Structure Of Human Parvulin 14
In Complex With Oxidized Dtt
Length = 101
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 88 EQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTE 147
E++ +G F E+A+++S+ A++ GDLG RG+M PF++AAF+L V M +PV T+
Sbjct: 26 EKLKSG-MRFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTD 83
Query: 148 S------GVHIIL 154
G HII+
Sbjct: 84 PPVKTKFGYHIIM 96
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Cdc25 Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Human Tau Phosphothreonine Peptide
Length = 39
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
+LP GWEKRMSRSSG YY N T SQW+RP+
Sbjct: 1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 88 EQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTE 147
E++ +G F E+A+++S+ A++ GDLG RG+M PF++AAF+L V M +PV T+
Sbjct: 29 EKLKSG-MRFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTD 86
Query: 148 S------GVHIIL 154
G HII+
Sbjct: 87 PPVKTKFGYHIIM 99
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A
Human Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
+LP GWEKRMSRSSG YY N T SQW+RP+
Sbjct: 1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
+LP GWEKRMSRSSG YY N T SQW+RP+
Sbjct: 3 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 35
>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 48 QVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS-D 106
+V H+L+K P D R K E I I +GK +F A +FS D
Sbjct: 264 EVHARHILLK------PSPIMTDEQARVKLEQIA------ADIKSGKTTFAAAAKEFSQD 311
Query: 107 CSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
SA + GDLG F DA L G+MS PV + G H+I
Sbjct: 312 PGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 358
>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
pdb|4G2P|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 110
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 48 QVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS-D 106
+V H+L+K P +D R K E I I +GK +F A ++S D
Sbjct: 8 EVHARHILLK------PSPIXNDQQARLKLEEIA------ADIKSGKTTFAAAAKEYSQD 55
Query: 107 CSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
SA + GDLG F DA L G++S PV + G H+I
Sbjct: 56 PGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 102
>pdb|2JV4|A Chain A, Structure Characterisation Of Pina Ww Domain And
Comparison With Other Group Iv Ww Domains, Pin1 And
Ess1
Length = 54
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
M + LPAGWE R S S YY N T+ES+W+ P
Sbjct: 3 MVNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
Homolog E3 Ubiquitin Protein Ligase (Itch)
Length = 43
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42
G LP GWE+R+ + G YY++ K + WDRP+ P+
Sbjct: 4 GSSGLPPGWEQRVDQH-GRVYYVDHVEKRTTWDRPSGPSSG 43
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
The Interaction Between Aip4ww2domain And Py Motif
Length = 39
Score = 34.7 bits (78), Expect = 0.020, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
LP GWE+R+ + G YY++ +T+ + W RPT
Sbjct: 7 LPPGWERRVD-NMGRIYYVDHFTRTTTWQRPT 37
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 34.7 bits (78), Expect = 0.023, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
LP GWE+R + G YY N+ T + W+RPT
Sbjct: 9 LPPGWERR-TDVEGKVYYFNVRTLTTTWERPT 39
>pdb|2KBU|A Chain A, Nmr Solution Structure Of Pin1 Ww Domain Mutant With
Beta Turn Mimic At Position 12
Length = 31
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
+LP GWEKRMS YY N T SQ++RP+
Sbjct: 1 KLPPGWEKRMSXRV---YYFNHITNASQFERPS 30
>pdb|2JX8|A Chain A, Solution Structure Of Hpcif1 Ww Domain
Length = 52
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
+ +E + AGWEK SR YY N +T +S W+ P
Sbjct: 6 LPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPV 42
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site
Within The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40
LP+GWE R++ ++ Y+++ TK + WD P P+
Sbjct: 9 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPS 42
>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex
With A Human Smad1 Doubly-Phosphorilated Derived
Peptide
Length = 40
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
M D LPAGWE + SSG Y+LN + + W P K
Sbjct: 3 MEDVPLPAGWEMAKT-SSGQRYFLNHIDQTTTWQDPRK 39
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
Virus Latent Membrane Protein 2a Derived Peptide
Eeppppyed
pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
Length = 37
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWEKR + S+G Y++N T+ +QW+ P
Sbjct: 6 LPPGWEKR-TDSNGRVYFVNHNTRITQWEDP 35
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
Length = 37
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWEKR + S+G Y++N T+ QW+ P
Sbjct: 6 LPPGWEKR-TDSNGRVYFVNHNTRIXQWEDP 35
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
G LP GWE+++ + G YY+N + +QW RP+
Sbjct: 1 GSPPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPS 35
>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex
With A Phosphorylated Human Smad1 Derived Peptide
pdb|2LTW|A Chain A, Yap Ww1 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
D LPAGWE + SSG Y+LN + + W P K
Sbjct: 1 DVPLPAGWEMAKT-SSGQRYFLNHIDQTTTWQDPRK 35
>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2
pdb|1K9R|A Chain A, Yap65 Ww Domain Complexed To Acetyl-Plppy
Length = 40
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
D LPAGWE + SSG Y+LN + + W P K
Sbjct: 6 DVPLPAGWEMAKT-SSGQRYFLNHIDQTTTWQDPRK 40
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
G LP+GWE+R + G YY+N + + W RP
Sbjct: 1 GSPGLPSGWEERKD-AKGRTYYVNHNNRTTTWTRP 34
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 30.8 bits (68), Expect = 0.34, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE+R + + G +++N K++QW+ P
Sbjct: 12 LPPGWEER-THTDGRVFFINHNIKKTQWEDP 41
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In
Complex With A Phosphorylated Ptpy Motif Derived From
Human Smad3
Length = 35
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP+GWE+R + G YY+N + + W RP
Sbjct: 2 LPSGWEERKD-AKGRTYYVNHNNRTTTWTRP 31
>pdb|2E45|A Chain A, Solution Structure Of Fe65 Ww Domain
Length = 55
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
D +LPAGW R+ +SG YY +I T +QW+ P +
Sbjct: 17 DSDLPAGW-MRVQDTSG-TYYWHIPTGTTQWEPPGR 50
>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid
Mutant
Length = 41
Score = 30.0 bits (66), Expect = 0.57, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 3 DEELPAGWEKRMSRSS-GHHYYLNIYTKESQWDRPTK 38
D LPAGWE M+++S G Y+LN + + W P K
Sbjct: 6 DVPLPAGWE--MAKTSXGQRYFLNHIDQTTTWQDPRK 40
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived
Peptide
Length = 34
Score = 30.0 bits (66), Expect = 0.62, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP+GWE+R + G YY+N + + W RP
Sbjct: 3 LPSGWEERKD-AKGRTYYVNHNNRTTTWTRP 32
>pdb|2ZAJ|A Chain A, Solution Structure Of The Short-Isoform Of The Second Ww
Domain From The Human Membrane-Associated Guanylate
Kinase, Ww And Pdz Domain-Containing Protein 1 (Magi-1)
Length = 49
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40
ELPAGWEK G YY++ +++Q++ P+ P+
Sbjct: 13 ELPAGWEKIEDPVYG-IYYVDHINRKTQYENPSGPS 47
>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg
Peptide
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
D LPAGWE + SSG Y+ N + + W P K
Sbjct: 6 DVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRK 40
>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7
Py Motif Containing Peptide
Length = 90
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHL 54
+LP G+E+R ++ G Y+L+ T S W P P + S + C L
Sbjct: 9 DLPEGYEQRTTQQ-GQVYFLHTQTGVSTWHDPRVPRDLS----NINCEEL 53
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 28.1 bits (61), Expect = 2.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE+ M++ G YY+N K + W P
Sbjct: 3 LPDGWEQAMTQ-DGEIYYINHKNKTTSWLDP 32
>pdb|2DK1|A Chain A, Solution Structure Of Ww Domain In Ww Domain Binding
Protein 4 (Wbp-4)
Length = 50
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 17 SSGHHYYLNIYTKESQWDRP 36
S G+HYY ++ + SQW++P
Sbjct: 15 SEGYHYYYDLISGASQWEKP 34
>pdb|2KGJ|A Chain A, Solution Structure Of Parvulin Domain Of Ppid From E.Coli
Length = 102
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 73 TRSKEEAIELVKSYREQINTGKASFGELAS-KFSDCSSAKRSGDLGPFGRGTMQKPFEDA 131
T++++EA K+ +++N G F LA K +D SA+ GD+G T+ ++A
Sbjct: 13 TKTEDEA----KAVLDELNKG-GDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNA 67
Query: 132 AFSLKVGEMSEPVLTESGVHII 153
K G++S + + G I+
Sbjct: 68 GLKEK-GQLSGVIKSSVGFLIV 88
>pdb|2HO2|A Chain A, Structure Of Human Fe65-Ww Domain In Complex With Hmena
Peptide.
pdb|2IDH|A Chain A, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|B Chain B, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|C Chain C, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|D Chain D, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|E Chain E, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|F Chain F, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|G Chain G, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|H Chain H, Crystal Structure Of Human Fe65 Ww Domain
pdb|2OEI|A Chain A, Crystal Structure Of Human Fe65-Ww Domain In Complex
With Human Mena Peptide
Length = 38
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
+LPAGW R+ +SG YY +I T +QW+ P +
Sbjct: 3 DLPAGW-MRVQDTSG-TYYWHIPTGTTQWEPPGR 34
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
Complex With A Human Smad1 Derived Peptide
Length = 38
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE+ M++ G YY+N K + W P
Sbjct: 7 LPDGWEQAMTQ-DGEIYYINHKNKTTSWLDP 36
>pdb|2FIQ|A Chain A, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|B Chain B, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|C Chain C, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|D Chain D, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
Length = 420
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 64 PYSWRDDNITRSKEEAIELVKSY 86
P W+ +N+ + E+++ELVK+Y
Sbjct: 91 PNCWQQENVDAAXEKSVELVKAY 113
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 17 SSGHHYYLNIYTKESQWDRP 36
S G+HYY ++ + SQW++P
Sbjct: 13 SEGYHYYYDLISGASQWEKP 32
>pdb|2YSE|A Chain A, Solution Structure Of The Second Ww Domain From The
Human Membrane-Associated Guanylate Kinase, Ww And Pdz
Domain- Containing Protein 1. Magi-1
Length = 60
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
ELPAGWEK G YY++ +++Q++ P
Sbjct: 13 ELPAGWEKIEDPVYG-IYYVDHINRKTQYENPV 44
>pdb|2DWV|A Chain A, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
pdb|2DWV|B Chain B, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
Length = 49
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40
E LP GWE+ S G YY++ K +Q+ P+ P+
Sbjct: 12 EGLPPGWERVESSEFG-TYYVDHTNKRAQYRHPSGPS 47
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From
HypaFBP11
Length = 92
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 12 KRMSRSSGHHYYLNIYTKESQWDRP 36
K SG YY N TKES+W +P
Sbjct: 58 KEYKSDSGKTYYYNSQTKESRWAKP 82
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 17 SSGHHYYLNIYTKESQWDRP 36
+SG YY N TK+S W++P
Sbjct: 10 ASGRIYYYNTLTKKSTWEKP 29
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 76 KEEAIELVKSYREQINTGKASFGELASKFSDCSSAKR 112
KEE + V+ R+Q + KA+ GE A CSS KR
Sbjct: 6 KEELVAAVEDVRKQGDLMKAAAGEFAD--DPCSSVKR 40
>pdb|3LJ5|A Chain A, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|B Chain B, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|C Chain C, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|D Chain D, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|E Chain E, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|F Chain F, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|G Chain G, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|H Chain H, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|I Chain I, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|J Chain J, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|K Chain K, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|L Chain L, Full Length Bacteriophage P22 Portal Protein
Length = 725
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 8 AGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKES 61
AG+E + + YYL T E+ D PT+P PE Q + +++ S
Sbjct: 357 AGFEHMYDGNDDYPYYLLNRTDENSGDLPTQPLAYYENPEVPQANAYMLEAATS 410
>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly
Phosphorylated Human Smad3 Derived Peptide
Length = 44
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE R++ +G ++ + TK + W+ P
Sbjct: 8 LPPGWEMRIA-PNGRPFFYDHNTKTTTWEDP 37
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 23 YLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKPYS---WRDDNITRSKEEA 79
Y N K + +P KP + GP +H + H PYS W + N E
Sbjct: 552 YQNHMGKNRMFTKPGKPTRPNQGP-----AHFELHHYAGNVPYSITGWLEKNKDPINENV 606
Query: 80 IELVKSYRE 88
+ L+ + +E
Sbjct: 607 VALLGASKE 615
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 23 YLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKPYS---WRDDNITRSKEEA 79
Y N K + +P KP + GP +H + H PYS W + N E
Sbjct: 552 YQNHMGKNRMFTKPGKPTRPNQGP-----AHFELHHYAGNVPYSITGWLEKNKDPINENV 606
Query: 80 IELVKSYRE 88
+ L+ + +E
Sbjct: 607 VALLGASKE 615
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 23 YLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKPYS---WRDDNITRSKEEA 79
Y N K + +P KP + GP +H + H PYS W + N E
Sbjct: 552 YQNHMGKNRMFTKPGKPTRPNQGP-----AHFELHHYAGNVPYSITGWLEKNKDPINENV 606
Query: 80 IELVKSYRE 88
+ L+ + +E
Sbjct: 607 VALLGASKE 615
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 23 YLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKPYS---WRDDNITRSKEEA 79
Y N K + +P KP + GP +H + H PYS W + N E
Sbjct: 548 YQNHMGKNRMFTKPGKPTRPNQGP-----AHFELHHYAGNVPYSITGWLEKNKDPINENV 602
Query: 80 IELVKSYRE 88
+ L+ + +E
Sbjct: 603 VALLGASKE 611
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 23 YLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKPYS---WRDDNITRSKEEA 79
Y N K + +P KP + GP +H + H PYS W + N E
Sbjct: 547 YQNHMGKNRMFTKPGKPTRPNQGP-----AHFELHHYAGNVPYSITGWLEKNKDPINENV 601
Query: 80 IELVKSYRE 88
+ L+ + +E
Sbjct: 602 VALLGASKE 610
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,150,554
Number of Sequences: 62578
Number of extensions: 201787
Number of successful extensions: 570
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 93
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)