Query psy2677
Match_columns 157
No_of_seqs 239 out of 1234
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:21:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3259|consensus 100.0 3E-40 6.5E-45 231.4 12.2 157 1-157 2-163 (163)
2 PF13616 Rotamase_3: PPIC-type 100.0 5.4E-29 1.2E-33 173.5 9.4 102 45-157 12-115 (117)
3 PTZ00356 peptidyl-prolyl cis-t 100.0 8.5E-28 1.8E-32 167.0 12.7 113 45-157 2-115 (115)
4 PF00639 Rotamase: PPIC-type P 99.9 8.1E-27 1.8E-31 156.8 10.9 94 53-157 1-95 (95)
5 PRK15441 peptidyl-prolyl cis-t 99.9 7.8E-26 1.7E-30 151.6 10.8 89 47-157 3-91 (93)
6 TIGR02933 nifM_nitrog nitrogen 99.9 3.1E-25 6.7E-30 173.5 12.2 102 43-157 118-219 (256)
7 PRK10770 peptidyl-prolyl cis-t 99.9 6.4E-24 1.4E-28 175.8 12.0 104 44-157 151-254 (413)
8 PRK04405 prsA peptidylprolyl i 99.9 5.9E-22 1.3E-26 158.0 10.6 90 46-157 142-235 (298)
9 PRK10770 peptidyl-prolyl cis-t 99.9 3.3E-22 7.2E-27 165.5 9.5 101 45-157 263-364 (413)
10 PRK02998 prsA peptidylprolyl i 99.9 2.2E-21 4.7E-26 153.8 11.0 89 47-157 133-222 (283)
11 PRK03002 prsA peptidylprolyl i 99.9 4.3E-21 9.3E-26 152.2 10.8 89 47-157 135-224 (285)
12 PRK03095 prsA peptidylprolyl i 99.9 4.7E-21 1E-25 152.1 10.8 89 47-157 131-220 (287)
13 KOG3258|consensus 99.8 2.5E-20 5.5E-25 125.0 7.4 92 43-157 34-131 (133)
14 PRK01326 prsA foldase protein 99.8 1.2E-19 2.6E-24 145.5 7.7 87 47-157 144-238 (310)
15 PRK00059 prsA peptidylprolyl i 99.8 4.9E-19 1.1E-23 143.1 10.9 91 45-157 193-286 (336)
16 PRK10788 periplasmic folding c 99.8 1.4E-18 3E-23 150.7 11.8 113 43-157 225-357 (623)
17 PRK12450 foldase protein PrsA; 99.8 4E-18 8.6E-23 136.7 9.8 87 47-157 147-241 (309)
18 TIGR02925 cis_trans_EpsD pepti 99.7 5.9E-18 1.3E-22 130.3 9.5 92 43-157 133-224 (232)
19 COG0760 SurA Parvulin-like pep 99.5 2.1E-15 4.7E-20 118.2 0.4 95 45-157 165-261 (320)
20 PF13145 Rotamase_2: PPIC-type 98.9 2.3E-09 5E-14 73.3 3.7 57 95-156 49-106 (121)
21 PF00397 WW: WW domain; Inter 97.9 4.1E-06 8.8E-11 44.6 1.1 31 6-36 1-31 (31)
22 smart00456 WW Domain with 2 co 97.7 2.7E-05 5.8E-10 41.4 1.8 31 6-37 1-31 (32)
23 cd00201 WW Two conserved trypt 97.1 0.00033 7.2E-09 36.7 1.7 30 7-37 1-30 (31)
24 KOG1891|consensus 96.9 0.00055 1.2E-08 52.2 1.8 39 2-41 90-128 (271)
25 PRK10788 periplasmic folding c 94.1 0.38 8.2E-06 42.3 9.0 69 84-157 391-472 (623)
26 KOG1891|consensus 91.3 0.14 3.1E-06 39.3 2.0 35 4-39 127-161 (271)
27 PF12075 KN_motif: KN motif; 78.4 1 2.2E-05 24.9 0.7 9 144-152 4-12 (39)
28 KOG3209|consensus 75.8 1.5 3.2E-05 39.3 1.4 34 3-37 220-253 (984)
29 KOG3209|consensus 68.9 2.6 5.7E-05 37.8 1.3 37 3-40 266-302 (984)
30 PF02609 Exonuc_VII_S: Exonucl 60.9 21 0.00046 20.8 3.9 31 77-107 2-32 (53)
31 PRK03941 NTPase; Reviewed 53.2 17 0.00036 27.0 3.0 42 83-125 108-150 (174)
32 TIGR00258 inosine/xanthosine t 53.0 18 0.0004 26.5 3.2 42 84-126 104-146 (163)
33 COG1986 Inosine/xanthosine tri 51.8 18 0.00039 26.8 3.0 41 84-125 110-151 (175)
34 KOG4334|consensus 50.8 10 0.00022 32.7 1.7 33 4-37 153-185 (650)
35 TIGR01280 xseB exodeoxyribonuc 49.0 37 0.0008 21.0 3.7 31 77-107 4-34 (67)
36 PRK03114 NTPase; Reviewed 48.2 23 0.0005 26.1 3.1 41 84-125 105-146 (169)
37 PRK05074 inosine/xanthosine tr 47.8 24 0.00052 26.2 3.1 41 84-125 109-150 (173)
38 PF05225 HTH_psq: helix-turn-h 46.5 42 0.00091 18.8 3.4 20 88-107 10-29 (45)
39 PRK14066 exodeoxyribonuclease 45.8 43 0.00094 21.2 3.7 32 76-107 6-37 (75)
40 PRK14063 exodeoxyribonuclease 45.6 43 0.00094 21.2 3.7 33 75-107 6-38 (76)
41 PRK00977 exodeoxyribonuclease 43.8 47 0.001 21.3 3.7 33 75-107 11-43 (80)
42 PRK14068 exodeoxyribonuclease 40.6 58 0.0013 20.7 3.7 33 75-107 7-39 (76)
43 PRK14067 exodeoxyribonuclease 40.3 59 0.0013 20.9 3.7 33 75-107 8-40 (80)
44 PRK14069 exodeoxyribonuclease 39.0 61 0.0013 21.6 3.7 33 75-107 9-41 (95)
45 PRK14064 exodeoxyribonuclease 38.9 64 0.0014 20.4 3.7 33 75-107 7-39 (75)
46 PRK05892 nucleoside diphosphat 37.3 62 0.0013 23.5 3.9 30 125-155 122-154 (158)
47 PF01931 NTPase_I-T: Protein o 34.9 37 0.00081 25.0 2.5 42 84-126 106-148 (168)
48 COG5104 PRP40 Splicing factor 34.8 21 0.00046 30.5 1.2 31 6-37 13-43 (590)
49 PF08332 CaMKII_AD: Calcium/ca 34.3 55 0.0012 23.0 3.1 29 77-107 3-31 (128)
50 PRK13696 hypothetical protein; 32.6 1.1E+02 0.0023 18.8 3.8 24 77-105 10-33 (62)
51 PF04218 CENP-B_N: CENP-B N-te 30.4 68 0.0015 18.6 2.6 21 86-107 15-35 (53)
52 cd01397 HAT_MBD Methyl-CpG bin 29.3 32 0.00069 21.8 1.1 11 4-14 4-14 (73)
53 PF14735 HAUS4: HAUS augmin-li 27.9 1E+02 0.0022 24.0 3.9 14 93-107 208-221 (238)
54 TIGR00370 conserved hypothetic 27.6 26 0.00057 26.5 0.6 12 143-154 165-176 (202)
55 COG3435 Gentisate 1,2-dioxygen 27.4 69 0.0015 26.1 2.9 62 80-154 226-289 (351)
56 COG5104 PRP40 Splicing factor 27.3 35 0.00076 29.2 1.3 30 8-38 56-85 (590)
57 KOG3552|consensus 27.3 21 0.00046 33.4 0.1 28 4-32 18-45 (1298)
58 PF14657 Integrase_AP2: AP2-li 25.7 1E+02 0.0022 17.1 2.8 19 75-93 26-44 (46)
59 PRK01170 phosphopantetheine ad 25.5 79 0.0017 25.8 3.0 42 84-126 257-299 (322)
60 KOG3427|consensus 25.3 37 0.0008 25.9 1.0 39 4-42 6-44 (222)
61 smart00391 MBD Methyl-CpG bind 24.5 43 0.00092 21.3 1.1 12 4-15 6-17 (77)
62 smart00796 AHS1 Allophanate hy 23.7 34 0.00073 25.8 0.6 12 143-154 175-186 (201)
63 COG4679 Phage-related protein 23.6 1.8E+02 0.004 20.1 4.1 37 46-91 78-114 (116)
64 PF00254 FKBP_C: FKBP-type pep 23.3 66 0.0014 20.4 1.9 25 120-144 40-64 (94)
65 PF04255 DUF433: Protein of un 23.2 1.1E+02 0.0025 17.8 2.8 22 84-106 22-43 (56)
66 cd00122 MBD MeCP2, MBD1, MBD2, 23.2 59 0.0013 19.5 1.5 13 3-15 3-15 (62)
67 PF04382 SAB: SAB domain; Int 22.7 57 0.0012 18.9 1.2 16 3-18 31-46 (48)
68 PF02697 DUF217: Uncharacteriz 22.7 1.3E+02 0.0027 18.9 3.0 26 77-106 8-33 (71)
69 PF02682 AHS1: Allophanate hyd 21.5 25 0.00054 26.6 -0.5 63 92-155 109-186 (202)
70 COG1722 XseB Exonuclease VII s 20.9 2E+02 0.0044 18.4 3.7 32 75-106 11-42 (81)
71 cd01396 MeCP2_MBD MeCP2, MBD1, 20.5 62 0.0013 20.5 1.2 11 4-14 5-15 (77)
72 TIGR01462 greA transcription e 20.5 1.5E+02 0.0033 21.1 3.4 30 125-155 118-150 (151)
73 PF04282 DUF438: Family of unk 20.5 1.3E+02 0.0028 18.9 2.7 23 83-106 2-24 (71)
No 1
>KOG3259|consensus
Probab=100.00 E-value=3e-40 Score=231.39 Aligned_cols=157 Identities=66% Similarity=1.082 Sum_probs=148.1
Q ss_pred CCCCCCCcchhhhcccCCCceeeEeeecccccccCCCCCCCC-----CCCCCcEEEEEEEeeccCCCCCCCCCccchhhh
Q psy2677 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA-----SGGPEQVQCSHLLVKHKESRKPYSWRDDNITRS 75 (157)
Q Consensus 1 ~~~~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~ 75 (157)
|+.+.||.+|+++.+++.++.||.|+.|+..||+.|...... ...|++|++.||||+......|++|..++++.+
T Consensus 2 ~~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~~~~~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~s 81 (163)
T KOG3259|consen 2 ADEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGKIGQGEPARVRCSHLLVKHKGSRRPSSWRSENITRS 81 (163)
T ss_pred cccccCCchhheeccccCCCcceeccccchhhccCCCccccccccccCCCccceeEEEEEEccccCCCCcccccccchhh
Confidence 567789999999999999999999999999999999875532 346899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCCCCcHHHHHHHhcCCCCCccccEEeCCeEEEEEE
Q psy2677 76 KEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILR 155 (157)
Q Consensus 76 ~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v 155 (157)
+++|.++|+.+.+.|++|..+|.+||+++|+|+++..|||||+|.+++|-++|+++.|.|++|++|+||.|+.|+|||+-
T Consensus 82 keeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgqMqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R 161 (163)
T KOG3259|consen 82 KEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQMQKPFEDAAFALKVGEMSGIVDTDSGVHIIYR 161 (163)
T ss_pred HHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccccccccccchhhhhhcccccccCceecCCceEEEEe
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999986
Q ss_pred eC
Q psy2677 156 TA 157 (157)
Q Consensus 156 ~~ 157 (157)
.+
T Consensus 162 ~~ 163 (163)
T KOG3259|consen 162 TA 163 (163)
T ss_pred cC
Confidence 53
No 2
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.96 E-value=5.4e-29 Score=173.52 Aligned_cols=102 Identities=45% Similarity=0.671 Sum_probs=83.6
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCc-hhhcCCCccccc-CC
Q psy2677 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCS-SAKRSGDLGPFG-RG 122 (157)
Q Consensus 45 ~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~-~~~~gG~lg~~~-~~ 122 (157)
.|++|+++||+|+.+.. + ..+.++|++.+++|+++|++| ++|++||++||+|+ ++.+||+|||+. .+
T Consensus 12 ~~~~v~~~~I~i~~~~~-~---------~~~~~~ak~~a~~i~~~l~~G-~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~ 80 (117)
T PF13616_consen 12 APDEVKVSHILIPVPDA-S---------SRSKEEAKKKADSILKQLKSG-ADFAELAKKYSQDPSSAENGGDLGWMSEPS 80 (117)
T ss_dssp E--EEEEEEEEESS---------------------HHHHHHHHHHHHCT-CCHHHHHHHHTSSCGTGGGTTEEEEEETTT
T ss_pred CcCeEEEEEEEEecccc-c---------cchhHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCCcccccCCccccccCCc
Confidence 57899999999997541 1 235678899999999999998 89999999999774 599999999999 99
Q ss_pred CCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 123 TMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 123 ~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
.|+++|.+++|+|++|+||+||+|+.|||||+|++
T Consensus 81 ~~~~~f~~~~~~l~~G~is~~v~s~~G~hIikv~d 115 (117)
T PF13616_consen 81 QLPPEFEEAAFSLKVGEISGPVESPNGYHIIKVTD 115 (117)
T ss_dssp SSSCHHHHHHHHS-TTECTCEEEETTEEEEEEEEE
T ss_pred cccHHHHHHHHcCCCCCCCCeEEECCEEEEEEEEe
Confidence 99999999999999999999999999999999974
No 3
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.95 E-value=8.5e-28 Score=167.03 Aligned_cols=113 Identities=59% Similarity=0.898 Sum_probs=96.5
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCC-ccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCCC
Q psy2677 45 GPEQVQCSHLLVKHKESRKPYSWR-DDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGT 123 (157)
Q Consensus 45 ~~~~~~~~~Ili~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~~ 123 (157)
.|++|+++||||.+.+..+|.+.. .....+.+++|++.++.|+++|++|+.+|+++|++||+++++.+||+|||+..++
T Consensus 2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~ 81 (115)
T PTZ00356 2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ 81 (115)
T ss_pred CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence 579999999999987654332211 1111246788999999999999998449999999999888888999999999999
Q ss_pred CcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 124 MQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 124 l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
|+++|.+++++|++|+||+||+|++|||||++++
T Consensus 82 L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~~ 115 (115)
T PTZ00356 82 MQKPFEDAAFALKVGEISDIVHTDSGVHIILRLA 115 (115)
T ss_pred cCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEcC
Confidence 9999999999999999999999999999999975
No 4
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.94 E-value=8.1e-27 Score=156.84 Aligned_cols=94 Identities=43% Similarity=0.648 Sum_probs=85.5
Q ss_pred EEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhC-CCchhhcCCCcccccCCCCcHHHHHH
Q psy2677 53 HLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS-DCSSAKRSGDLGPFGRGTMQKPFEDA 131 (157)
Q Consensus 53 ~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS-~~~~~~~gG~lg~~~~~~l~~~~~~a 131 (157)
||||+.+.. .+..+++++.+++|+++|++|+.+|+++|++|| +.+++.+||++||+..++|+++|.++
T Consensus 1 HIl~~~~~~-----------~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~ 69 (95)
T PF00639_consen 1 HILVKPPPS-----------DEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKA 69 (95)
T ss_dssp EEEEESTTS-----------CCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHH
T ss_pred CEEEECCCc-----------hhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHH
Confidence 899998752 236788999999999999999544999999999 56899999999999999999999999
Q ss_pred HhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 132 AFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 132 v~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
|++|++|+||.||+|++|||||+|++
T Consensus 70 ~~~l~~Gevs~pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 70 LFALKPGEVSKPIETDNGYHIIKVED 95 (95)
T ss_dssp HHTSTTTSBEEEEEETTEEEEEEEEE
T ss_pred HHhCCCCCcCCCEEECCEEEEEEEEC
Confidence 99999999999999999999999974
No 5
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.93 E-value=7.8e-26 Score=151.60 Aligned_cols=89 Identities=43% Similarity=0.622 Sum_probs=79.8
Q ss_pred CcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCCCCcH
Q psy2677 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQK 126 (157)
Q Consensus 47 ~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~~l~~ 126 (157)
.++.++||++.. + +.++.|+++|++| .+|+++|++||+++++..||+|||+..++|++
T Consensus 3 ~~~~~~~I~~~~-----------------~----~~A~~i~~~l~~g-~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~ 60 (93)
T PRK15441 3 KTAAALHILVKE-----------------E----KLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP 60 (93)
T ss_pred CceEEEEEEECC-----------------H----HHHHHHHHHHHCC-CCHHHHHHHhCCCchhhcCccceeecccccCH
Confidence 578999999972 2 3345666788888 79999999999987778999999999999999
Q ss_pred HHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 127 PFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 127 ~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
+|+++++.|++|++|+||+|++|||||+|++
T Consensus 61 ~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv~~ 91 (93)
T PRK15441 61 AFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 91 (93)
T ss_pred HHHHHHHhCCCCCcCCcEEcCCEEEEEEEEe
Confidence 9999999999999999999999999999985
No 6
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.93 E-value=3.1e-25 Score=173.46 Aligned_cols=102 Identities=31% Similarity=0.460 Sum_probs=90.6
Q ss_pred CCCCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCC
Q psy2677 43 SGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRG 122 (157)
Q Consensus 43 ~~~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~ 122 (157)
+..|..++++||+|+.++. ..+.+++.++.|+++|++|..+|++||++||+++++.+||+|||+..+
T Consensus 118 ~~~~e~~~~~hIli~~~~~-------------~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGdlG~~~~~ 184 (256)
T TIGR02933 118 FKRPEQRLTRHLLLTVNED-------------DREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRG 184 (256)
T ss_pred cCCCCeEEEEEEEEECCcc-------------cHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCccCCcCCC
Confidence 4567888899999997432 235678888899999998746899999999998888999999999999
Q ss_pred CCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 123 TMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 123 ~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
.|+|+|.+++++|++|+||+||+|++|||||+|.+
T Consensus 185 ~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~ 219 (256)
T TIGR02933 185 LLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEA 219 (256)
T ss_pred ccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEee
Confidence 99999999999999999999999999999999974
No 7
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.91 E-value=6.4e-24 Score=175.78 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=93.4
Q ss_pred CCCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCCC
Q psy2677 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGT 123 (157)
Q Consensus 44 ~~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~~ 123 (157)
..+++++++||+|+.+..++ .....+++..++.|+.+|++| .+|+++|++||+++++.+||+|||+..+.
T Consensus 151 ~~~~~~~~~~I~i~~~~~~s---------~~~~~~~~~~a~~l~~~l~~g-~~F~~lA~~yS~~~~a~~gGdlg~~~~~~ 220 (413)
T PRK10770 151 DASTELNLSHILIPLPENPT---------QDQVDEAESQARSIVDQARNG-ADFGKLAIAYSADQQALKGGQMGWGRIQE 220 (413)
T ss_pred cccceEEEEEEEEeCCCCCC---------HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcccccCCcCCcccccc
Confidence 46789999999999765433 234567788889999999999 79999999999998899999999999999
Q ss_pred CcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 124 MQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 124 l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
||++|.+++|+|++|+||+||+|+.|||||+|.+
T Consensus 221 l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~ 254 (413)
T PRK10770 221 LPGLFAQALSTAKKGDIVGPIRSGVGFHILKVND 254 (413)
T ss_pred ccHHHHHHHHhCCCCCCCCcEECCCceEEEEEee
Confidence 9999999999999999999999999999999974
No 8
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.87 E-value=5.9e-22 Score=157.97 Aligned_cols=90 Identities=32% Similarity=0.541 Sum_probs=76.6
Q ss_pred CCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC-chhhcCCCccccc--CC
Q psy2677 46 PEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC-SSAKRSGDLGPFG--RG 122 (157)
Q Consensus 46 ~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~-~~~~~gG~lg~~~--~~ 122 (157)
+++|+++||+++. ++.| +.+.++|++| .+|+++|++||++ .++.+||+|||+. .+
T Consensus 142 ~~~~~v~hIlv~~-----------------~~~A----~~v~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~ 199 (298)
T PRK04405 142 QPKVTVQHILVSK-----------------KSTA----ETVIKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFDSTDT 199 (298)
T ss_pred hhhEEEEEEEecC-----------------hHHH----HHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccccCCC
Confidence 4689999999973 2334 4456688899 7999999999976 5677999999885 46
Q ss_pred CCcHHHHHHHhcCCCCCcc-ccEEeCCeEEEEEEeC
Q psy2677 123 TMQKPFEDAAFSLKVGEMS-EPVLTESGVHIILRTA 157 (157)
Q Consensus 123 ~l~~~~~~av~~l~~Geis-~pi~t~~G~hIi~v~~ 157 (157)
.|+++|++++++|++|+|| +||+|++|||||+|++
T Consensus 200 ~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~ 235 (298)
T PRK04405 200 TLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIK 235 (298)
T ss_pred CCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEee
Confidence 8999999999999999995 9999999999999973
No 9
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.87 E-value=3.3e-22 Score=165.54 Aligned_cols=101 Identities=30% Similarity=0.437 Sum_probs=89.4
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC-chhhcCCCcccccCCC
Q psy2677 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC-SSAKRSGDLGPFGRGT 123 (157)
Q Consensus 45 ~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~-~~~~~gG~lg~~~~~~ 123 (157)
..++++++||+|++.+. .+.++|++.+++|+++|.+|+.+|+++|++||++ .++.+||+|||+..+.
T Consensus 263 ~~~e~~~~hIli~~~~~------------~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~~~~~~ 330 (413)
T PRK10770 263 SVTEVHARHILLKPSPI------------MTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDI 330 (413)
T ss_pred hHHhhhhhheEECCCCC------------CCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCccCccc
Confidence 34689999999986432 1346788899999999999845999999999987 5788999999999999
Q ss_pred CcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 124 MQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 124 l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
|+|+|.+++++|++|++|+||.|++|||||+|++
T Consensus 331 ~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~ 364 (413)
T PRK10770 331 FDPAFRDALMRLNKGQISAPVHSSFGWHLIELLD 364 (413)
T ss_pred cCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEee
Confidence 9999999999999999999999999999999974
No 10
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.86 E-value=2.2e-21 Score=153.76 Aligned_cols=89 Identities=38% Similarity=0.660 Sum_probs=78.6
Q ss_pred CcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC-chhhcCCCcccccCCCCc
Q psy2677 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC-SSAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 47 ~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~-~~~~~gG~lg~~~~~~l~ 125 (157)
++++++||+|+. +.. ++.++++|++| .+|+++|++||++ .++.+||++||+..+.++
T Consensus 133 ~~~~v~~Ilv~~-----------------e~~----A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~ 190 (283)
T PRK02998 133 PEMKVSHILVKD-----------------EKT----AKEVKEKVNNG-EDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190 (283)
T ss_pred cceEEEEEEeCC-----------------HHH----HHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCCCcCCCcch
Confidence 469999999973 223 35567788999 7999999999987 467789999999999999
Q ss_pred HHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 126 KPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 126 ~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
|+|.+++|+|++|+||+||+|++|||||+|++
T Consensus 191 ~~~~~a~~~Lk~GevS~pi~t~~G~hIikv~~ 222 (283)
T PRK02998 191 KEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTD 222 (283)
T ss_pred HHHHHHHHcCCCCCcCCceEECCEEEEEEEec
Confidence 99999999999999999999999999999974
No 11
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=4.3e-21 Score=152.22 Aligned_cols=89 Identities=44% Similarity=0.692 Sum_probs=78.8
Q ss_pred CcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCc-hhhcCCCcccccCCCCc
Q psy2677 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCS-SAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 47 ~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~-~~~~gG~lg~~~~~~l~ 125 (157)
++++++||+|+. ++.| +.++.+|++| .+|+++|++||.++ ++.+||++||+..+.|+
T Consensus 135 ~~~~~~~Ilv~~-----------------~~~A----~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~ 192 (285)
T PRK03002 135 PEIKASHILVSD-----------------ENEA----KEIKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNSGRMA 192 (285)
T ss_pred cceEEEEEEECC-----------------HHHH----HHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccceeccccCC
Confidence 578999999973 2333 4566788889 79999999999874 67899999999999999
Q ss_pred HHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 126 KPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 126 ~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
|+|.+++++|++|++|+||+|++|||||+|++
T Consensus 193 p~~~~a~~~L~~GevS~pI~t~~G~hIikv~~ 224 (285)
T PRK03002 193 PEFETAAYKLKVGQISNPVKSPNGYHIIKLTD 224 (285)
T ss_pred HHHHHHHHcCCCCCcCCcEEECCEEEEEEEee
Confidence 99999999999999999999999999999974
No 12
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=4.7e-21 Score=152.12 Aligned_cols=89 Identities=46% Similarity=0.733 Sum_probs=78.3
Q ss_pred CcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCc-hhhcCCCcccccCCCCc
Q psy2677 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCS-SAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 47 ~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~-~~~~gG~lg~~~~~~l~ 125 (157)
++++++||+++. +.. ++.++++|++| .+|+++|++||+++ ++.+||++||+..+.|+
T Consensus 131 ~~v~~~hIlv~~-----------------~~~----A~~i~~~l~~G-~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~ 188 (287)
T PRK03095 131 PEIKASHILVKD-----------------EAT----AKKVKEELGQG-KSFEELAKQYSEDTGSKEKGGDLGFFGAGKMV 188 (287)
T ss_pred ccEEEEEEEeCC-----------------HHH----HHHHHHHHHCC-CCHHHHHHHhCCCccccccCCcCceecccccc
Confidence 469999999973 223 34566788889 79999999999874 67789999999999999
Q ss_pred HHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 126 KPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 126 ~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
|+|.+++++|++|+||+||+|++|||||+|++
T Consensus 189 ~~~~~al~~L~~GevS~pi~t~~G~hIikv~~ 220 (287)
T PRK03095 189 KEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTD 220 (287)
T ss_pred HHHHHHHHhCCCCCcCCceEECCEEEEEEEee
Confidence 99999999999999999999999999999974
No 13
>KOG3258|consensus
Probab=99.82 E-value=2.5e-20 Score=125.04 Aligned_cols=92 Identities=37% Similarity=0.656 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCC
Q psy2677 43 SGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRG 122 (157)
Q Consensus 43 ~~~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~ 122 (157)
.....-|.+||||..-. -. +.+..+.|++| ..|.++|.+||+|. +.+||||||+.++
T Consensus 34 kgggtaVKvRHiLCEKq-----------------GK----i~EA~eKLk~G-~~F~evAA~YSEdk-ar~GGDLGW~~RG 90 (133)
T KOG3258|consen 34 KGGGTAVKVRHILCEKQ-----------------GK----INEAMEKLKSG-MKFNEVAAQYSEDK-ARQGGDLGWMTRG 90 (133)
T ss_pred CCCcceEEEEEeeehhh-----------------ch----HHHHHHHHHcc-cchHHHHHHhccCc-cccCCcccceecc
Confidence 45668899999999631 12 33344588899 89999999999987 6789999999999
Q ss_pred CCcHHHHHHHhcCCCC------CccccEEeCCeEEEEEEeC
Q psy2677 123 TMQKPFEDAAFSLKVG------EMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 123 ~l~~~~~~av~~l~~G------eis~pi~t~~G~hIi~v~~ 157 (157)
.|.-+|++++|+|+++ -.+.||+|.+|||||.|++
T Consensus 91 ~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvEG 131 (133)
T KOG3258|consen 91 SMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVEG 131 (133)
T ss_pred ccccchhhhhhcccccccCCccccCCCcccccceEEEEecc
Confidence 9999999999999998 4456778889999999874
No 14
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.80 E-value=1.2e-19 Score=145.45 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=72.5
Q ss_pred CcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHh-cChhhHHHHHHhhCCCchhhcCCCcccccC-CCC
Q psy2677 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQIN-TGKASFGELASKFSDCSSAKRSGDLGPFGR-GTM 124 (157)
Q Consensus 47 ~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~-~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~-~~l 124 (157)
++++++||++. +++.| +.+.++|+ .| ++|++||++||. ++.+||+|||+.. +.|
T Consensus 144 ~~~~~~~I~~~-----------------~~~~A----~~i~~~l~~~G-~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l 199 (310)
T PRK01326 144 PEVTAQIIRLD-----------------NEDKA----KSVLEEAKAEG-ADFAQIAKENTT--TKEKKGEYKFDSGSTNV 199 (310)
T ss_pred ccccchhhhHh-----------------hhHHH----HHHHHHHHhCC-CCHHHHHHHhCc--ccccCCcccccCCCCcc
Confidence 45788998875 23444 44556887 58 799999999998 6678999999987 579
Q ss_pred cHHHHHHHhcCCCCCccccEEe------CCeEEEEEEeC
Q psy2677 125 QKPFEDAAFSLKVGEMSEPVLT------ESGVHIILRTA 157 (157)
Q Consensus 125 ~~~~~~av~~l~~Geis~pi~t------~~G~hIi~v~~ 157 (157)
|++|.+++|+|++|+||+||+| .+|||||+|.+
T Consensus 200 ~~~~~~a~~~Lk~GevS~pv~t~~~~~~~~GyhIikv~~ 238 (310)
T PRK01326 200 PEQVKKAAFALDEDGVSDVISVLDPTAYQSKYYIVKVTK 238 (310)
T ss_pred cHHHHHHHHcCCCCCcCCceecCCCCcCCceEEEEEEec
Confidence 9999999999999999999987 67999999974
No 15
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.79 E-value=4.9e-19 Score=143.10 Aligned_cols=91 Identities=35% Similarity=0.563 Sum_probs=80.4
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC-chhhcCCCcccccC--
Q psy2677 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC-SSAKRSGDLGPFGR-- 121 (157)
Q Consensus 45 ~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~-~~~~~gG~lg~~~~-- 121 (157)
.|.+++++||+++. ++. ++++++++++| .+|+++|++||++ .++.+||++||+..
T Consensus 193 ~p~~~~v~~I~~~~-----------------~~~----a~~~~~~l~~g-~~F~~la~~~s~~~~~~~~~g~lg~~~~~~ 250 (336)
T PRK00059 193 KPNTMHLAHILVKT-----------------EDE----AKKVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDVPYSD 250 (336)
T ss_pred CcceEEEEEEEecC-----------------HHH----HHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccccccccc
Confidence 68899999999973 223 45566788899 6999999999987 67889999999998
Q ss_pred CCCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 122 GTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 122 ~~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
+.++|+|.++++.|++|+||+||++++|||||+|++
T Consensus 251 ~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~ 286 (336)
T PRK00059 251 SGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIK 286 (336)
T ss_pred CccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEe
Confidence 789999999999999999999999999999999974
No 16
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.78 E-value=1.4e-18 Score=150.69 Aligned_cols=113 Identities=22% Similarity=0.290 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEEEeeccCCCCCCCCCccchhhhHH-------------------HHHHHHHHHHHHHhcChhhHHHHHHh
Q psy2677 43 SGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKE-------------------EAIELVKSYREQINTGKASFGELASK 103 (157)
Q Consensus 43 ~~~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~-------------------~A~~~~~~i~~~l~~g~~~F~~lA~~ 103 (157)
|..|++++++||+|+..........+++++..--+ .+++.++.++++|++| ++|+++|++
T Consensus 225 f~~pe~~~i~yi~l~~~~~~~~~~vt~~ei~~~y~~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G-~~F~~lA~~ 303 (623)
T PRK10788 225 FMAPEQFKVSYIKLDAATMQQKITVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKG-ADFATLAKE 303 (623)
T ss_pred cCCcceEEEEEEEechhhhcCCCCCCHHHHHHHHHHHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 67899999999999865432222222111100000 1244567788899999 799999999
Q ss_pred hCCC-chhhcCCCcccccCCCCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 104 FSDC-SSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 104 yS~~-~~~~~gG~lg~~~~~~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
||++ .++.+||+|||+.++.|+++|.++++ +++|+||+||+|++|||||+|++
T Consensus 304 ~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs~pv~t~~G~~Iikv~~ 357 (623)
T PRK10788 304 KSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDD 357 (623)
T ss_pred hCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcCCcEEECCeEEEEEEEe
Confidence 9987 58899999999999999999999988 68899999999999999999974
No 17
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.76 E-value=4e-18 Score=136.66 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=70.5
Q ss_pred CcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHh-cChhhHHHHHHhhCCCchhhcCCCcccccC-CCC
Q psy2677 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQIN-TGKASFGELASKFSDCSSAKRSGDLGPFGR-GTM 124 (157)
Q Consensus 47 ~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~-~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~-~~l 124 (157)
++++++||++. +++.|++ ++++|+ .| ++|++||++||.++ .+||++||... +.|
T Consensus 147 ~~~~~~~I~~~-----------------~~~~A~~----i~~~l~~~G-~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l 202 (309)
T PRK12450 147 PTMTAEIMQFE-----------------KEEDAKA----ALEAVKAEG-ADFAAIAKEKTIAA--DKKTTYTFDSGETTL 202 (309)
T ss_pred ccceeEEEEeC-----------------CHHHHHH----HHHHHHhcC-CCHHHHHHHhCCCc--ccCCcccccCCCCCC
Confidence 47899999885 2345544 445776 47 79999999999864 36889998754 579
Q ss_pred cHHHHHHHhcCCCCCccc------cEEeCCeEEEEEEeC
Q psy2677 125 QKPFEDAAFSLKVGEMSE------PVLTESGVHIILRTA 157 (157)
Q Consensus 125 ~~~~~~av~~l~~Geis~------pi~t~~G~hIi~v~~ 157 (157)
+|+|.+++|+|++|+||+ ||+|++|||||+|++
T Consensus 203 ~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~ 241 (309)
T PRK12450 203 PAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTK 241 (309)
T ss_pred CHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEec
Confidence 999999999999999998 557899999999974
No 18
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.75 E-value=5.9e-18 Score=130.27 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=77.8
Q ss_pred CCCCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCC
Q psy2677 43 SGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRG 122 (157)
Q Consensus 43 ~~~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~ 122 (157)
+..+.+|+++||+|+.+ .. .++++++++++| .+|.++|+.+++.+. ..+|++||++.+
T Consensus 133 f~~~~~~~~~hIlv~~~----------------~~----~a~~~~~~l~~g-~~f~~la~~~~~~~~-~~~~~~~~~~~~ 190 (232)
T TIGR02925 133 FAERKLYNLQEIALPPD----------------ME----LLDELRAMVENG-KPLEDILAWLKAKNV-PFNASSAARPAE 190 (232)
T ss_pred cCCCceEEEEEEEecCC----------------hh----HHHHHHHHHhcC-CCHHHHHHHhhhcCc-ccccccccCchh
Confidence 55789999999999832 12 235566788888 799999999986433 457889999999
Q ss_pred CCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 123 TMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 123 ~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
+||++|.+++++|++|+|| ||+|++|||||+|.+
T Consensus 191 ~l~~~~~~a~~~l~~G~is-~v~s~~G~hiikv~~ 224 (232)
T TIGR02925 191 QLPAEILAVLAKLKPGAPL-VVQGPNNVLILVLAD 224 (232)
T ss_pred hCCHHHHHHHHhCCCCCeE-EeecCCceEEEEEec
Confidence 9999999999999999999 899999999999974
No 19
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.1e-15 Score=118.25 Aligned_cols=95 Identities=40% Similarity=0.502 Sum_probs=74.2
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHh-cChhhHHHHHHhhCCCchhh-cCCCcccccCC
Q psy2677 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQIN-TGKASFGELASKFSDCSSAK-RSGDLGPFGRG 122 (157)
Q Consensus 45 ~~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~-~g~~~F~~lA~~yS~~~~~~-~gG~lg~~~~~ 122 (157)
..++++.+||+++.. ..|++....+..... .+ .+|.++|++||.++... .||++||...+
T Consensus 165 ~~~~~~~~~i~~~~~-----------------~~a~~~~~~~~~~~~~~~-~~f~~~a~~~s~~~~~~~~g~~~~~~~~~ 226 (320)
T COG0760 165 KVTEVQARHILVKAE-----------------AKAKEALALLKKGVREAK-ADFAELAKKQSEDPSSKNGGGLLGWNKKG 226 (320)
T ss_pred HHHHHhhcccccCch-----------------HhHHHHHHHHHhcccccc-CCHHHHHHHcCCCcccccCCccccccCcc
Confidence 358999999999843 333333322211111 23 69999999999887666 47788889999
Q ss_pred CCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEeC
Q psy2677 123 TMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157 (157)
Q Consensus 123 ~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~~ 157 (157)
.|+|+|.++++.+++|++|.||+|.+|||||+|++
T Consensus 227 ~~~p~f~~a~~~~~~g~~~~pv~t~~g~~ii~v~~ 261 (320)
T COG0760 227 QLVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEK 261 (320)
T ss_pred ccChHHHHHHHhccCcccccccccchHHHHHHHHh
Confidence 99999999999999999999999999999998863
No 20
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=98.85 E-value=2.3e-09 Score=73.31 Aligned_cols=57 Identities=35% Similarity=0.541 Sum_probs=44.1
Q ss_pred hhHHHHHHhhCCCchhhcCCCcccccC-CCCcHHHHHHHhcCCCCCccccEEeCCeEEEEEEe
Q psy2677 95 ASFGELASKFSDCSSAKRSGDLGPFGR-GTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156 (157)
Q Consensus 95 ~~F~~lA~~yS~~~~~~~gG~lg~~~~-~~l~~~~~~av~~l~~Geis~pi~t~~G~hIi~v~ 156 (157)
.+|..++..++... .++++... ..|+++|.+++|.|++|++|+||++++|||||+|.
T Consensus 49 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~s~~i~~~~~~~v~~v~ 106 (121)
T PF13145_consen 49 EDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEVSGPIESGNGYYVVKVK 106 (121)
T ss_dssp HHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-EEEEEEETTEEEEEEEE
T ss_pred chHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCeeeeEEECCEEEEEEEE
Confidence 68999998887542 33445444 45889999999999999999999999999999986
No 21
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=97.92 E-value=4.1e-06 Score=44.57 Aligned_cols=31 Identities=55% Similarity=1.067 Sum_probs=27.6
Q ss_pred CCcchhhhcccCCCceeeEeeecccccccCC
Q psy2677 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36 (157)
Q Consensus 6 ~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~ 36 (157)
||++|+...+...++.||.|+.+..++|+.|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 7999998887347999999999999999876
No 22
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=97.67 E-value=2.7e-05 Score=41.42 Aligned_cols=31 Identities=52% Similarity=1.096 Sum_probs=28.3
Q ss_pred CCcchhhhcccCCCceeeEeeecccccccCCC
Q psy2677 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37 (157)
Q Consensus 6 ~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~ 37 (157)
||.+|++..+.. ++.||+|+.++.++|+.|.
T Consensus 1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence 799999999955 9999999999999999885
No 23
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.09 E-value=0.00033 Score=36.67 Aligned_cols=30 Identities=50% Similarity=1.063 Sum_probs=27.0
Q ss_pred CcchhhhcccCCCceeeEeeecccccccCCC
Q psy2677 7 PAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37 (157)
Q Consensus 7 p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~ 37 (157)
|.+|++..+.. ++.||+|+.++.++|+.|.
T Consensus 1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence 78999999955 9999999999999999885
No 24
>KOG1891|consensus
Probab=96.86 E-value=0.00055 Score=52.20 Aligned_cols=39 Identities=26% Similarity=0.728 Sum_probs=34.7
Q ss_pred CCCCCCcchhhhcccCCCceeeEeeecccccccCCCCCCC
Q psy2677 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAE 41 (157)
Q Consensus 2 ~~~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~~~~~ 41 (157)
+|-|||+||+..++ -.|+-|||+|.+.+++|.+|++-+.
T Consensus 90 edlPLPpgWav~~T-~~grkYYIDHn~~tTHW~HPlerEg 128 (271)
T KOG1891|consen 90 EDLPLPPGWAVEFT-TEGRKYYIDHNNRTTHWVHPLEREG 128 (271)
T ss_pred ccCCCCCCcceeeE-ecCceeEeecCCCcccccChhhhcc
Confidence 46789999999888 8899999999999999999997653
No 25
>PRK10788 periplasmic folding chaperone; Provisional
Probab=94.14 E-value=0.38 Score=42.31 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=42.5
Q ss_pred HHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCCCC-----cHHHHHHHhcC-------CCCCccccEEeC-CeE
Q psy2677 84 KSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTM-----QKPFEDAAFSL-------KVGEMSEPVLTE-SGV 150 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~~l-----~~~~~~av~~l-------~~Geis~pi~t~-~G~ 150 (157)
+.+...+..++.+|+++|+...-.- ...+|+.++.. .+.+..++|+. ++|..|++|..+ .||
T Consensus 391 ~~l~~~~~~~~~~l~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~aF~~~v~~~~~~~g~~s~~i~~~~~~~ 465 (623)
T PRK10788 391 QKVSDAASNDNESLASAEQAAGVKA-----VQTGWFSRDNVPAELNFKPVAQAIFNGGLVGENGAPGSNSDVITVDGDRA 465 (623)
T ss_pred HHHHHHHhhCccchHHHHHHcCCeE-----EEcCCcCCCCCccccCCHHHHHHHcChHhhhccccCCCCCCCEEEcCCEE
Confidence 3343334333357888888754221 11124444322 25688999984 479999999875 579
Q ss_pred EEEEEeC
Q psy2677 151 HIILRTA 157 (157)
Q Consensus 151 hIi~v~~ 157 (157)
+|++|.+
T Consensus 466 ~vv~v~~ 472 (623)
T PRK10788 466 FVLRISE 472 (623)
T ss_pred EEEEEcc
Confidence 9999864
No 26
>KOG1891|consensus
Probab=91.28 E-value=0.14 Score=39.32 Aligned_cols=35 Identities=31% Similarity=0.671 Sum_probs=28.7
Q ss_pred CCCCcchhhhcccCCCceeeEeeecccccccCCCCC
Q psy2677 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39 (157)
Q Consensus 4 ~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~~~ 39 (157)
|-||+||++.++ +.--.||.|+-++.+|..+||-.
T Consensus 127 EgLppGW~rv~s-~e~GtyY~~~~~k~tQy~HPc~~ 161 (271)
T KOG1891|consen 127 EGLPPGWKRVFS-PEKGTYYYHEEMKRTQYEHPCIS 161 (271)
T ss_pred ccCCcchhhccc-cccceeeeecccchhhhcCCCCC
Confidence 559999999999 55555677999999999999854
No 27
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=78.36 E-value=1 Score=24.89 Aligned_cols=9 Identities=56% Similarity=0.600 Sum_probs=8.2
Q ss_pred EEeCCeEEE
Q psy2677 144 VLTESGVHI 152 (157)
Q Consensus 144 i~t~~G~hI 152 (157)
|+|++||||
T Consensus 4 v~tPYGyhi 12 (39)
T PF12075_consen 4 VETPYGYHI 12 (39)
T ss_pred ccCCcceee
Confidence 689999998
No 28
>KOG3209|consensus
Probab=75.84 E-value=1.5 Score=39.30 Aligned_cols=34 Identities=29% Similarity=0.660 Sum_probs=30.2
Q ss_pred CCCCCcchhhhcccCCCceeeEeeecccccccCCC
Q psy2677 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37 (157)
Q Consensus 3 ~~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~ 37 (157)
+++||+-|+-..+ ..+..|+++|.++.+.|..|.
T Consensus 220 ~gplp~nwemayt-e~gevyfiDhntkttswLdpr 253 (984)
T KOG3209|consen 220 LGPLPHNWEMAYT-EQGEVYFIDHNTKTTSWLDPR 253 (984)
T ss_pred cCCCCccceEeEe-ecCeeEeeecccccceecChh
Confidence 5789999987666 799999999999999999876
No 29
>KOG3209|consensus
Probab=68.89 E-value=2.6 Score=37.84 Aligned_cols=37 Identities=38% Similarity=0.689 Sum_probs=30.7
Q ss_pred CCCCCcchhhhcccCCCceeeEeeecccccccCCCCCC
Q psy2677 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40 (157)
Q Consensus 3 ~~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~~~~ 40 (157)
|.+||++|++-.. .....||+.|++..+++..++-.+
T Consensus 266 d~elPygWeki~d-piYg~yyvdHiN~~sq~enpvlea 302 (984)
T KOG3209|consen 266 DQELPYGWEKIED-PIYGTYYVDHINRKSQYENPVLEA 302 (984)
T ss_pred cccccccccccCC-ccceeEEecccchhhhhccchhhc
Confidence 5679999998777 667788889999999988888654
No 30
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=60.92 E-value=21 Score=20.79 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 77 EEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 77 ~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+++...+++|.++|.+|..+.++..+.|...
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg 32 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEG 32 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3567788999999999888999998888753
No 31
>PRK03941 NTPase; Reviewed
Probab=53.21 E-value=17 Score=27.01 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=34.9
Q ss_pred HHHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCc
Q psy2677 83 VKSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 83 ~~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~ 125 (157)
=..+.++|.+| ..+.++..++.. ...+.++|-+|.++.+.+.
T Consensus 108 P~~v~~~i~~G-~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~vt 150 (174)
T PRK03941 108 PPLVVEEVLKG-KEVGDVMSELTGIKELGRKIGAIGFLSRGMLD 150 (174)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHhCCCCcCcCCceEEEecCCcee
Confidence 35566688899 799999999874 6888999999999998775
No 32
>TIGR00258 inosine/xanthosine triphosphatase.
Probab=53.02 E-value=18 Score=26.51 Aligned_cols=42 Identities=17% Similarity=0.420 Sum_probs=34.7
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCcH
Q psy2677 84 KSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQK 126 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~~ 126 (157)
..+..+|++| ..+.++..++.. ...+.++|-+|.++.+.+..
T Consensus 104 ~~v~~~i~~G-~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~v~R 146 (163)
T TIGR00258 104 KVVVEKVLEG-EEVGPVMEEYTGIDEIGRKEGAIGYLTAGKLTR 146 (163)
T ss_pred HHHHHHHHcC-CcHHHHHHHHhCCCCcCCCCceEEEecCCcccH
Confidence 4556688899 799999999884 68889999999999988753
No 33
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=51.77 E-value=18 Score=26.81 Aligned_cols=41 Identities=17% Similarity=0.448 Sum_probs=34.4
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCc
Q psy2677 84 KSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~ 125 (157)
..+..++.+| ..|.+++.+|+. +....+.|-+|.++.+.+.
T Consensus 110 ~~v~~~vl~G-~ElG~v~~~~~g~~~ig~~~GaIG~lT~g~lt 151 (175)
T COG1986 110 PRVLEEVLQG-KELGEVMEEYTGIDEIGRKEGAIGVLTNGKLT 151 (175)
T ss_pred HHHHHHHHcc-ccHHHHHHHHcCCCCcCcccceEEEeeCCeee
Confidence 4456688899 799999999995 5778889999999998875
No 34
>KOG4334|consensus
Probab=50.76 E-value=10 Score=32.75 Aligned_cols=33 Identities=36% Similarity=0.647 Sum_probs=24.4
Q ss_pred CCCCcchhhhcccCCCceeeEeeecccccccCCC
Q psy2677 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37 (157)
Q Consensus 4 ~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~ 37 (157)
++||+||.-..- ..|--.|++..|++-.|-.|+
T Consensus 153 epLPeGW~~i~H-nSGmPvylHr~tRVvt~SrPY 185 (650)
T KOG4334|consen 153 EPLPEGWTVISH-NSGMPVYLHRFTRVVTHSRPY 185 (650)
T ss_pred CcCCCceEEEee-cCCCceEEeeeeeeEeccCce
Confidence 689999976666 455556668888887777665
No 35
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=48.96 E-value=37 Score=20.95 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 77 EEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 77 ~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+++.+.+++|.++|.+|..+.++..+.|...
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~Leesl~lyeeG 34 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLALEEALNLFERG 34 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5678889999999999988999998888764
No 36
>PRK03114 NTPase; Reviewed
Probab=48.20 E-value=23 Score=26.13 Aligned_cols=41 Identities=15% Similarity=0.408 Sum_probs=34.0
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCc
Q psy2677 84 KSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~ 125 (157)
..+..+|.+| ..+.++..++.. ...+.++|-+|.++.+.+.
T Consensus 105 ~~v~~~i~~G-~ELG~vmd~~~g~~ni~~~~GaIG~LT~g~vt 146 (169)
T PRK03114 105 DDFLAPLEAG-KELSEVMEEYVQRKDIRSHEGAIGIFTDGYVD 146 (169)
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 4555678889 799999999884 6788999999999998774
No 37
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=47.79 E-value=24 Score=26.15 Aligned_cols=41 Identities=15% Similarity=0.382 Sum_probs=34.2
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCc
Q psy2677 84 KSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQ 125 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~ 125 (157)
..+..+|.+| ..+.++..++.. ...+.++|-+|.++.+.+.
T Consensus 109 ~~v~~~i~~G-~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~vt 150 (173)
T PRK05074 109 AVVLEALRQG-EELGDVMDRLFGTDNIKQKGGAIGLLTAGKLT 150 (173)
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 4566688899 799999999874 6788899999999998775
No 38
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=46.48 E-value=42 Score=18.85 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHhcChhhHHHHHHhhCCC
Q psy2677 88 EQINTGKASFGELASKFSDC 107 (157)
Q Consensus 88 ~~l~~g~~~F~~lA~~yS~~ 107 (157)
..+++|+.++..+|++|.-+
T Consensus 10 ~~v~~g~~S~r~AA~~ygVp 29 (45)
T PF05225_consen 10 EAVKNGKMSIRKAAKKYGVP 29 (45)
T ss_dssp HHHHTTSS-HHHHHHHHT--
T ss_pred HHHHhCCCCHHHHHHHHCcC
Confidence 35667768999999999865
No 39
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=45.81 E-value=43 Score=21.22 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 76 KEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 76 ~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
=++|...+++|.++|.+|..+.++..+.|..+
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG 37 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEG 37 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46788899999999999988899998888764
No 40
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=45.61 E-value=43 Score=21.23 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+=+++...++.|.++|.+|..+.++..+.|..+
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG 38 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKEG 38 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 347888999999999999988999999988864
No 41
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=43.84 E-value=47 Score=21.27 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+=++|.+.+++|.++|.+|..+.++..+.|...
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg 43 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFERG 43 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 457899999999999999988999998888764
No 42
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=40.55 E-value=58 Score=20.68 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+=+++.+.++.|.++|.+|..+.++..+.|-.+
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG 39 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRG 39 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357888999999999999988899988888754
No 43
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=40.29 E-value=59 Score=20.89 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+=+++.+.+++|.++|.+|..+.++..+.|...
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG 40 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEG 40 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 457889999999999999988999999998864
No 44
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.98 E-value=61 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+=++|.+.+++|.++|.+|..+.++..+.|-..
T Consensus 9 sFEeal~~LEeIV~~LEsgdl~LEesl~lyeeG 41 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQDFSLEESLKAYERG 41 (95)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 457889999999999999988888888888754
No 45
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.95 E-value=64 Score=20.42 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
+=+++.+.++.|.++|.+|..+.++..+.|-..
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G 39 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKG 39 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 457889999999999999988888888888754
No 46
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=37.31 E-value=62 Score=23.45 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=23.8
Q ss_pred cHHHHHHHhcCCCCCccccEEeCCe---EEEEEE
Q psy2677 125 QKPFEDAAFSLKVGEMSEPVLTESG---VHIILR 155 (157)
Q Consensus 125 ~~~~~~av~~l~~Geis~pi~t~~G---~hIi~v 155 (157)
..++.+++.+.++|+... +.++.| |.|+.+
T Consensus 122 ~SPlG~ALlGk~vGD~v~-v~~p~g~~~~eI~~I 154 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVT-YSTPQGPAQVELLAV 154 (158)
T ss_pred CCHHHHHHhCCCCCCEEE-EEcCCCcEEEEEEEE
Confidence 357999999999999865 678877 666655
No 47
>PF01931 NTPase_I-T: Protein of unknown function DUF84; InterPro: IPR002786 This is a family of prokaryotic proteins of unknown function.; PDB: 1U5W_E 1ZNO_B 1ZWY_D 1U14_A.
Probab=34.91 E-value=37 Score=24.96 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=32.2
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCcH
Q psy2677 84 KSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQK 126 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~~ 126 (157)
..+...|++| ....++..+|.. ...+.++|-+|.++.+.+..
T Consensus 106 ~~v~~~i~~G-~ELg~v~d~~~g~~~i~~~~GaiG~LT~g~v~R 148 (168)
T PF01931_consen 106 PEVAEEILEG-KELGEVMDELFGRKNIGQKEGAIGILTNGRVTR 148 (168)
T ss_dssp HHHHHHHTTT---HHHHHHHHHTHTTGGGTTHHHHHHTTTSS-H
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcccCCceEEEecCCcccH
Confidence 4556688888 799999999885 57788999999999998753
No 48
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=34.77 E-value=21 Score=30.48 Aligned_cols=31 Identities=32% Similarity=0.736 Sum_probs=25.8
Q ss_pred CCcchhhhcccCCCceeeEeeecccccccCCC
Q psy2677 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37 (157)
Q Consensus 6 ~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~ 37 (157)
.-+.|+.--+ ..|+.||.|..|+-+.|++|.
T Consensus 13 ~~s~w~e~k~-~dgRiYYYN~~T~kS~weKPk 43 (590)
T COG5104 13 ARSEWEELKA-PDGRIYYYNKRTGKSSWEKPK 43 (590)
T ss_pred HHHHHHHhhC-CCCceEEEecccccccccChH
Confidence 4456876555 889999999999999999994
No 49
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=34.26 E-value=55 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHhhCCC
Q psy2677 77 EEAIELVKSYREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 77 ~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
++..++.+.+.+.|..| |++..++.|..+
T Consensus 3 ~eI~~l~~~w~~ai~tg--D~~~~~~ly~~d 31 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTG--DPETYAKLYAPD 31 (128)
T ss_dssp HHHHHHHHHHHHHHHHT---HHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHhhhcCCC
Confidence 45566678888899998 899999999965
No 50
>PRK13696 hypothetical protein; Provisional
Probab=32.60 E-value=1.1e+02 Score=18.79 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHhhC
Q psy2677 77 EEAIELVKSYREQINTGKASFGELASKFS 105 (157)
Q Consensus 77 ~~A~~~~~~i~~~l~~g~~~F~~lA~~yS 105 (157)
+++.+.+. ..+.| .+|.++.+++-
T Consensus 10 dd~Y~~L~----~kk~~-~SFSevi~~L~ 33 (62)
T PRK13696 10 DDVYEKLL----EIKGD-KSFSEVIRELI 33 (62)
T ss_pred HHHHHHHH----HHhCC-CCHHHHHHHHH
Confidence 44555554 55566 79999999987
No 51
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=30.41 E-value=68 Score=18.59 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=15.1
Q ss_pred HHHHHhcChhhHHHHHHhhCCC
Q psy2677 86 YREQINTGKASFGELASKFSDC 107 (157)
Q Consensus 86 i~~~l~~g~~~F~~lA~~yS~~ 107 (157)
|...+..| .+..++|++|.-.
T Consensus 15 iI~~~e~g-~s~~~ia~~fgv~ 35 (53)
T PF04218_consen 15 IIKRLEEG-ESKRDIAREFGVS 35 (53)
T ss_dssp HHHHHHCT-T-HHHHHHHHT--
T ss_pred HHHHHHcC-CCHHHHHHHhCCC
Confidence 44578899 6999999999854
No 52
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=29.26 E-value=32 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=8.1
Q ss_pred CCCCcchhhhc
Q psy2677 4 EELPAGWEKRM 14 (157)
Q Consensus 4 ~~~p~~w~~~~ 14 (157)
-|||+||+...
T Consensus 4 ~Pl~~GW~Re~ 14 (73)
T cd01397 4 VPLELGWRRET 14 (73)
T ss_pred CCCCCCceeEE
Confidence 47999997544
No 53
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=27.87 E-value=1e+02 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=12.0
Q ss_pred ChhhHHHHHHhhCCC
Q psy2677 93 GKASFGELASKFSDC 107 (157)
Q Consensus 93 g~~~F~~lA~~yS~~ 107 (157)
| .+|.++|++|.+-
T Consensus 208 g-~~F~~ivreY~~l 221 (238)
T PF14735_consen 208 G-PEFEEIVREYTDL 221 (238)
T ss_pred c-HhHHHHHHHHHHH
Confidence 5 6999999999863
No 54
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=27.63 E-value=26 Score=26.52 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=10.1
Q ss_pred cEEeCCeEEEEE
Q psy2677 143 PVLTESGVHIIL 154 (157)
Q Consensus 143 pi~t~~G~hIi~ 154 (157)
|+.++.|||||=
T Consensus 165 p~~sPGGW~iIG 176 (202)
T TIGR00370 165 PISTPGGWQLIG 176 (202)
T ss_pred ccCCCCcceEee
Confidence 678999999983
No 55
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.36 E-value=69 Score=26.15 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHhhCCCchhhcCCCcccccCCCCcHHHHHHHhcCCCCCccccEEeCC--eEEEEE
Q psy2677 80 IELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTES--GVHIIL 154 (157)
Q Consensus 80 ~~~~~~i~~~l~~g~~~F~~lA~~yS~~~~~~~gG~lg~~~~~~l~~~~~~av~~l~~Geis~pi~t~~--G~hIi~ 154 (157)
++.|+.|. ++..+ ..|+-.+.+|++..+ ||.. .+.+.....-|++|-.+.+.++-+ =||+++
T Consensus 226 ~eAL~~la-~~e~~-dp~dG~~~ryvNP~T---Gg~~--------mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~e 289 (351)
T COG3435 226 REALERLA-RLEEP-DPFDGYKMRYVNPVT---GGYA--------MPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVE 289 (351)
T ss_pred HHHHHHHH-hccCC-CCCCcceEEEecCCC---CCCc--------CchHHHHHHhcCCcccCCceeccCCEEEEEEe
Confidence 34444443 55556 689999999998643 5543 267888888999999999987543 366664
No 56
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=27.35 E-value=35 Score=29.22 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=26.5
Q ss_pred cchhhhcccCCCceeeEeeecccccccCCCC
Q psy2677 8 AGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38 (157)
Q Consensus 8 ~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~~ 38 (157)
.+|....+ ..|.-||.|..|+.+.|..|-.
T Consensus 56 ~~Wke~~T-adGkvyyyN~~TREs~W~iP~e 85 (590)
T COG5104 56 DPWKECRT-ADGKVYYYNSITRESRWKIPPE 85 (590)
T ss_pred hhHHHHhh-cCCceEEecCccccccccCChh
Confidence 57887777 7899999999999999998875
No 57
>KOG3552|consensus
Probab=27.28 E-value=21 Score=33.36 Aligned_cols=28 Identities=43% Similarity=0.872 Sum_probs=20.9
Q ss_pred CCCCcchhhhcccCCCceeeEeeeccccc
Q psy2677 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQ 32 (157)
Q Consensus 4 ~~~p~~w~~~~~~~~~~~y~~n~~~~~~~ 32 (157)
++|+++|+...+ +.++.||+|+..+...
T Consensus 18 ~~v~~~~~r~~d-sk~r~~y~~~~~~~~~ 45 (1298)
T KOG3552|consen 18 EELSYGWERAID-SKGRSYYINHLNKTTT 45 (1298)
T ss_pred cccchHHHHhhh-cccchhHHhhcCCccC
Confidence 568999987666 7888888888665543
No 58
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=25.68 E-value=1e+02 Score=17.11 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q psy2677 75 SKEEAIELVKSYREQINTG 93 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g 93 (157)
++.+|+..+.++...+.+|
T Consensus 26 TkkeA~~~~~~~~~~~~~g 44 (46)
T PF14657_consen 26 TKKEAEKALAKIEAELENG 44 (46)
T ss_pred cHHHHHHHHHHHHHHHHcC
Confidence 5778888888888888776
No 59
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=25.48 E-value=79 Score=25.84 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=34.5
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC-CchhhcCCCcccccCCCCcH
Q psy2677 84 KSYREQINTGKASFGELASKFSD-CSSAKRSGDLGPFGRGTMQK 126 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~-~~~~~~gG~lg~~~~~~l~~ 126 (157)
..+...|.+| ....++..++.. ...+.++|-+|.++.+.+..
T Consensus 257 ~~v~~~i~~G-~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~v~R 299 (322)
T PRK01170 257 DKIIDMIKRG-MEVSDAYEKYSGIKDIDKKMGIIGKISKGKIRR 299 (322)
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcCCCCceEEEecCCceeH
Confidence 4556688899 689999999884 68889999999999988753
No 60
>KOG3427|consensus
Probab=25.33 E-value=37 Score=25.86 Aligned_cols=39 Identities=36% Similarity=0.699 Sum_probs=33.6
Q ss_pred CCCCcchhhhcccCCCceeeEeeecccccccCCCCCCCC
Q psy2677 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42 (157)
Q Consensus 4 ~~~p~~w~~~~~~~~~~~y~~n~~~~~~~~~~~~~~~~~ 42 (157)
..||..|.+....+++..||-|..+--..|..|..|-+.
T Consensus 6 ~rlp~~w~kv~~~s~~~~y~wn~~td~v~w~sp~~P~~~ 44 (222)
T KOG3427|consen 6 QRLPKLWTKVFDASPGSEYIWNIITDNVDWDSPSGPYPY 44 (222)
T ss_pred hcCCchhHhhcccccchhhhhhcccccccccCCCCCccc
Confidence 458999999999999999999999988889988876543
No 61
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=24.55 E-value=43 Score=21.25 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=8.7
Q ss_pred CCCCcchhhhcc
Q psy2677 4 EELPAGWEKRMS 15 (157)
Q Consensus 4 ~~~p~~w~~~~~ 15 (157)
-|||.||.+..-
T Consensus 6 ~Plp~GW~R~~~ 17 (77)
T smart00391 6 LPLPCGWRRETK 17 (77)
T ss_pred CCCCCCcEEEEE
Confidence 469999975554
No 62
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=23.73 E-value=34 Score=25.84 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=10.0
Q ss_pred cEEeCCeEEEEE
Q psy2677 143 PVLTESGVHIIL 154 (157)
Q Consensus 143 pi~t~~G~hIi~ 154 (157)
|..++.||+||=
T Consensus 175 p~~SPGGW~iIG 186 (201)
T smart00796 175 PLESPGGWQLIG 186 (201)
T ss_pred CCCCCCcceEee
Confidence 567999999984
No 63
>COG4679 Phage-related protein [Function unknown]
Probab=23.56 E-value=1.8e+02 Score=20.07 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCcEEEEEEEeeccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHh
Q psy2677 46 PEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQIN 91 (157)
Q Consensus 46 ~~~~~~~~Ili~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~~~l~ 91 (157)
.+.|-+-|+|-+-.+..+ ..+.+-|+.+..++.++++
T Consensus 78 ~~~vyvLH~FqKKTqkTp---------k~d~~la~rRykdl~~rl~ 114 (116)
T COG4679 78 DEAVYVLHCFQKKTQKTP---------KRDIDLAKRRYKDLKRRLK 114 (116)
T ss_pred cceEEeehhhHHhccCCc---------hHHHHHHHHHHHHHHHHhh
Confidence 378888899887554322 3456777877777777754
No 64
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=23.26 E-value=66 Score=20.37 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=20.5
Q ss_pred cCCCCcHHHHHHHhcCCCCCccccE
Q psy2677 120 GRGTMQKPFEDAAFSLKVGEMSEPV 144 (157)
Q Consensus 120 ~~~~l~~~~~~av~~l~~Geis~pi 144 (157)
..+.+.+.|+.++..|++|+....+
T Consensus 40 g~~~~i~g~e~al~~m~~Ge~~~~~ 64 (94)
T PF00254_consen 40 GSGQVIPGLEEALIGMKVGEKREFY 64 (94)
T ss_dssp TSSSSSHHHHHHHTTSBTTEEEEEE
T ss_pred ccCccccchhhhcccccCCCEeeeE
Confidence 3456889999999999999987543
No 65
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.25 E-value=1.1e+02 Score=17.76 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=15.4
Q ss_pred HHHHHHHhcChhhHHHHHHhhCC
Q psy2677 84 KSYREQINTGKASFGELASKFSD 106 (157)
Q Consensus 84 ~~i~~~l~~g~~~F~~lA~~yS~ 106 (157)
..|...+..| .+.++++..|-.
T Consensus 22 ~~i~~~~~~G-~s~eeI~~~yp~ 43 (56)
T PF04255_consen 22 RDILDLLAAG-ESPEEIAEDYPS 43 (56)
T ss_dssp HHHHHHHHTT---HHHHHHHSTT
T ss_pred HHHHHHHHcC-CCHHHHHHHCCC
Confidence 3445577788 899999999974
No 66
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=23.18 E-value=59 Score=19.47 Aligned_cols=13 Identities=31% Similarity=1.043 Sum_probs=9.1
Q ss_pred CCCCCcchhhhcc
Q psy2677 3 DEELPAGWEKRMS 15 (157)
Q Consensus 3 ~~~~p~~w~~~~~ 15 (157)
.-|+|.||.+..-
T Consensus 3 ~~P~p~GW~R~~~ 15 (62)
T cd00122 3 RDPLPPGWKRELV 15 (62)
T ss_pred CCCCCCCeEEEEE
Confidence 4578999965443
No 67
>PF04382 SAB: SAB domain; InterPro: IPR007477 This presumed domain is found in proteins containing FERM domains IPR000299 from INTERPRO. This domain is found to bind to both spectrin and actin, hence the name SAB (Spectrin and Actin Binding) domain.; GO: 0008092 cytoskeletal protein binding, 0030866 cortical actin cytoskeleton organization, 0005856 cytoskeleton
Probab=22.73 E-value=57 Score=18.87 Aligned_cols=16 Identities=50% Similarity=0.823 Sum_probs=12.3
Q ss_pred CCCCCcchhhhcccCC
Q psy2677 3 DEELPAGWEKRMSRSS 18 (157)
Q Consensus 3 ~~~~p~~w~~~~~~~~ 18 (157)
..+.|.-|++|.+.+.
T Consensus 31 ~~~~~~EweKRLssSP 46 (48)
T PF04382_consen 31 PEPRPREWEKRLSSSP 46 (48)
T ss_pred CCCCCCccccccCCCC
Confidence 3568899999998654
No 68
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.65 E-value=1.3e+02 Score=18.87 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHhhCC
Q psy2677 77 EEAIELVKSYREQINTGKASFGELASKFSD 106 (157)
Q Consensus 77 ~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~ 106 (157)
++|...|. .++.++.+|.++..++-.
T Consensus 8 devY~rL~----~~K~~~eSFSdvI~rli~ 33 (71)
T PF02697_consen 8 DEVYERLK----KLKREDESFSDVIERLIE 33 (71)
T ss_pred HHHHHHHH----HHhcCCCCHHHHHHHHHh
Confidence 56777776 445334899999999865
No 69
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=21.51 E-value=25 Score=26.57 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=31.0
Q ss_pred cChhhHHHHHHhhCCCc-hhhcCCCc-ccccCCCCcHHHHH-----HHhcCCCCCcc--------ccEEeCCeEEEEEE
Q psy2677 92 TGKASFGELASKFSDCS-SAKRSGDL-GPFGRGTMQKPFED-----AAFSLKVGEMS--------EPVLTESGVHIILR 155 (157)
Q Consensus 92 ~g~~~F~~lA~~yS~~~-~~~~gG~l-g~~~~~~l~~~~~~-----av~~l~~Geis--------~pi~t~~G~hIi~v 155 (157)
.| .+-+++.+.++... .-.--|-+ |+-..+.|++.+.- -=...+.|.|. =|..++.|||||=.
T Consensus 109 ~g-ls~~evi~~H~~~~y~V~~iGF~PGfpYL~gld~~l~~PR~~~PR~~vPaGSV~Iag~qtgIYP~~sPGGW~iIGr 186 (202)
T PF02682_consen 109 NG-LSVEEVIRLHSSAEYRVYMIGFAPGFPYLGGLDPRLAVPRRSTPRTRVPAGSVGIAGRQTGIYPQESPGGWQIIGR 186 (202)
T ss_dssp HT-S-HHHHHHHHHTS-EEEEEECSSTTEEEEECSSGGG-B---SS-EEEE-TTEEEEEBTEEEEESSSEEE-SEEEEE
T ss_pred hC-cCHHHHHHHHHcCchHhhccCcccCcHhhcccCcccCCCCCCCCCccCCCCEEEEccceEEEEecCCCCcceEEee
Confidence 35 67899999998642 22222322 33334455555411 11122345442 25578999999843
No 70
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=20.87 E-value=2e+02 Score=18.43 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhcChhhHHHHHHhhCC
Q psy2677 75 SKEEAIELVKSYREQINTGKASFGELASKFSD 106 (157)
Q Consensus 75 ~~~~A~~~~~~i~~~l~~g~~~F~~lA~~yS~ 106 (157)
+-+++.+.+++|..+|.+|..+.++.-+.|-.
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~er 42 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALKEFER 42 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 46788999999999999997777777666654
No 71
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=20.50 E-value=62 Score=20.52 Aligned_cols=11 Identities=36% Similarity=1.202 Sum_probs=8.0
Q ss_pred CCCCcchhhhc
Q psy2677 4 EELPAGWEKRM 14 (157)
Q Consensus 4 ~~~p~~w~~~~ 14 (157)
-.||+||.+..
T Consensus 5 ~~lp~GW~r~~ 15 (77)
T cd01396 5 PRLPPGWKREL 15 (77)
T ss_pred CCCCCCCEEEE
Confidence 35999997554
No 72
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=20.48 E-value=1.5e+02 Score=21.05 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=23.5
Q ss_pred cHHHHHHHhcCCCCCccccEEeCCe---EEEEEE
Q psy2677 125 QKPFEDAAFSLKVGEMSEPVLTESG---VHIILR 155 (157)
Q Consensus 125 ~~~~~~av~~l~~Geis~pi~t~~G---~hIi~v 155 (157)
..++..++.+.++|+... +.++.| |.|+.|
T Consensus 118 ~SPlG~ALlG~~~Gd~v~-v~~p~g~~~~~I~~I 150 (151)
T TIGR01462 118 DSPLGKALIGKKVGDVVE-VQTPKGEKEYEILKI 150 (151)
T ss_pred CCHHHHHHcCCCCCCEEE-EEeCCCcEEEEEEEE
Confidence 467999999999999964 677777 666654
No 73
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.45 E-value=1.3e+02 Score=18.87 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=17.4
Q ss_pred HHHHHHHHhcChhhHHHHHHhhCC
Q psy2677 83 VKSYREQINTGKASFGELASKFSD 106 (157)
Q Consensus 83 ~~~i~~~l~~g~~~F~~lA~~yS~ 106 (157)
+.+|..+|.+| .+++++=++|.+
T Consensus 2 LK~ii~~Lh~G-~~~e~vk~~F~~ 24 (71)
T PF04282_consen 2 LKEIIKRLHEG-EDPEEVKEEFKK 24 (71)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHH
Confidence 45667788888 688888777764
Done!