RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2677
(157 letters)
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 218 bits (556), Expect = 3e-74
Identities = 98/162 (60%), Positives = 119/162 (73%), Gaps = 6/162 (3%)
Query: 1 MGDEE-LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA-----EASGGPEQVQCSHL 54
M DEE LP GWEK MSRSSG YY N T SQW+RP+ + G P +V+CSHL
Sbjct: 4 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 63
Query: 55 LVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSG 114
LVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F LAS+FSDCSSAK G
Sbjct: 64 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 123
Query: 115 DLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
DLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 124 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 165
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 206 bits (526), Expect = 2e-69
Identities = 74/173 (42%), Positives = 100/173 (57%), Gaps = 18/173 (10%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT-----------------KPAEASGG 45
LP W R+SRS Y+LN T ES WD P
Sbjct: 5 STGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKNNGYKPLVNE 64
Query: 46 PEQVQCSHLLVKHKESRKPYSWRD-DNITRSKEEAIELVKSYREQINTGKASFGELASKF 104
QV+ SHLL+K+ +SRKP SW+ D I+R+++E+I+++K + E+I +G+ ELA+
Sbjct: 65 DGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTE 124
Query: 105 SDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
SDCSS R GDLG F +G MQ PFE+AAF+L VGE+S + T SGVHI+ RT
Sbjct: 125 SDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD,
small molecule, ppiase, cell cycle, nucleus,
phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens}
PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Length = 123
Score = 176 bits (448), Expect = 3e-58
Identities = 72/113 (63%), Positives = 91/113 (80%)
Query: 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASK 103
G P +V+CSHLLVKH +SR+P SWR + ITR++EEA+EL+ Y ++I +G+ F LAS+
Sbjct: 10 GEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 104 FSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
FSDCSSAK GDLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 70 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1,
phosphorylation; NMR {Arabidopsis thaliana} SCOP:
d.26.1.1
Length = 139
Score = 175 bits (445), Expect = 1e-57
Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 9/143 (6%)
Query: 19 GHHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKPYSWRDDN----ITR 74
G ++ + S P AS +QV+ SH+L+KH+ SR+ SW+D +T
Sbjct: 2 GSSHHHH---HHSSGLVPRGSHMAS--RDQVKASHILIKHQGSRRKASWKDPEGKIILTT 56
Query: 75 SKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFS 134
++E A+E +KS RE I +GKA+F E+A++ SDCSSAKR GDLG FGRG MQKPFE+A ++
Sbjct: 57 TREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYA 116
Query: 135 LKVGEMSEPVLTESGVHIILRTA 157
LKVG++S+ V T+SGVHII RTA
Sbjct: 117 LKVGDISDIVDTDSGVHIIKRTA 139
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase,
lipoprotein, membrane, palmitate, rotamase; NMR
{Staphylococcus aureus}
Length = 111
Score = 142 bits (359), Expect = 7e-45
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKF 104
G + + SH+L+K K + DD + K E I +++++ + FGE+A K
Sbjct: 4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEI------QKEVSKDPSKFGEIAKKE 57
Query: 105 S-DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
S D SAK+ G+LG +G K FE A F LK GE+SE V + G HII
Sbjct: 58 SMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHII 107
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation,
cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1,
cell cycle; NMR {Cenarchaeum symbiosum}
Length = 97
Score = 113 bits (286), Expect = 6e-34
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 23/119 (19%)
Query: 40 AEASGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGE 99
++++CSH+LVK + EA+ + +E++ G FG+
Sbjct: 1 GPMGSMADKIKCSHILVK-----------------KQGEALAV----QERLKAG-EKFGK 38
Query: 100 LASKFS-DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
LA + S D SAKR G LG FGRG M KPFEDAAF L+VGE+SEPV +E G H+I R
Sbjct: 39 LAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, pcsep; 1.82A {Salmonella
enterica subsp}
Length = 110
Score = 106 bits (268), Expect = 5e-31
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 46 PEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS 105
+V H+L+K + + ++A ++ I +GK +F A ++S
Sbjct: 6 VTEVHARHILLK------------PSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYS 53
Query: 106 DC-SSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
SA + GDLG F DA L G++S PV + G H+I
Sbjct: 54 QDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 102
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS
peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB:
1jnt_A
Length = 92
Score = 103 bits (260), Expect = 5e-30
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 22/107 (20%)
Query: 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSD 106
+ H+LVK ++ A++L EQI G A FG+LA K S
Sbjct: 2 KTAAALHILVK-----------------EEKLALDL----LEQIKNG-ADFGKLAKKHSI 39
Query: 107 CSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
C S KR GDLG F +G M F+ FS V E + P+ T+ G HII
Sbjct: 40 CPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 86
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase
domain, 11189O3,PSI2., structural genomics; 1.55A
{Novosphingobium aromaticivorans}
Length = 112
Score = 103 bits (259), Expect = 1e-29
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 43 SGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELAS 102
S G E+ + + + E +K + + EQ+ G SF A
Sbjct: 2 SLGTEEYRIGEIFLAATE-------------ENKPQVFANAEKIVEQLKQG-GSFVAYAR 47
Query: 103 KFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
++S+ S+A GDLG + A S+ G+++ PV G I+
Sbjct: 48 QYSEASTAAVGGDLGWIRLAQLPTELATTAASMGPGQLAGPVEIRGGFSIL 98
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR
{Bacillus subtilis}
Length = 93
Score = 101 bits (255), Expect = 3e-29
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 23/113 (20%)
Query: 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKF 104
G +++ SH+LV K+ A E+ K ++ G F +LA ++
Sbjct: 1 GSGKIRASHILVA-----------------DKKTAEEVEK----KLKKG-EKFEDLAKEY 38
Query: 105 SDCSSAKRSGDLGPFGR-GTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
S SSA + GDLG F + G M + F AAF LK GE+S+PV T+ G HII +T
Sbjct: 39 STDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKKT 91
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans
isomerase domain, peptide, complex; 1.30A {Escherichia
coli} SCOP: d.26.1.1 PDB: 2pv2_A
Length = 103
Score = 101 bits (253), Expect = 7e-29
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 48 QVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC 107
++ SH+L+ E+ D + ++ +A +V Q G A FG+LA S
Sbjct: 2 ELNLSHILIPLPENPTS-----DQVNEAESQARAIVD----QARNG-ADFGKLAIAHSAD 51
Query: 108 SSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
A G +G + F A + K G++ P+ + G HI+
Sbjct: 52 QQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHIL 97
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin,
cell inner membrane, cell membrane, membrane, rotamase,
stress response; NMR {Escherichia coli}
Length = 102
Score = 92.7 bits (231), Expect = 1e-25
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 46 PEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS 105
P++ + S + K +++EA ++ ++N G F LA + S
Sbjct: 3 PQRTRYSIIQTK-----------------TEDEAKAVLD----ELNKG-GDFAALAKEKS 40
Query: 106 -DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
D SA+ GD+G T+ ++A K G++S + + G I+
Sbjct: 41 ADIISARNGGDMGWLEDATIPDELKNAGLKEK-GQLSGVIKSSVGFLIV 88
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact;
peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB:
3ui5_A 1fjd_A 1eq3_A
Length = 101
Score = 91.6 bits (228), Expect = 3e-25
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 29/115 (25%)
Query: 45 GPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKF 104
G V+ H+L + + +E E++ +G F E+A+++
Sbjct: 4 GSNAVKVRHILCE-----------------KHGKIMEA----MEKLKSG-MRFNEVAAQY 41
Query: 105 SDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSE------PVLTESGVHII 153
S+ A++ GDLG RG+M PF++AAF+L V M + PV T+ G HII
Sbjct: 42 SEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHII 95
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter
jejuni}
Length = 252
Score = 93.7 bits (233), Expect = 2e-24
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKS-YREQINTGKASFGELAS 102
P +VQ H+LV +++EA +++ + A F ELA
Sbjct: 108 VKPARVQAKHILVA-----------------TEKEAKDIINELKGLKGKELDAKFSELAK 150
Query: 103 KFSDC-SSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEM-SEPVLTESGVHII 153
+ S S + G+LG F + TM KPF DAAF+LK G + + PV T G H+I
Sbjct: 151 EKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVI 203
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 88.8 bits (220), Expect = 6e-22
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 44 GGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASK 103
G + + + + ++ + + + V R+ I +SF +A
Sbjct: 157 GFEIRYRIISIAPE------------NDSIQEENRLYKEVSEIRKSILADPSSFALIAGS 204
Query: 104 FSDCSSAKRS-GDLGPFGRGTMQKPFE---DAAFSLKVGEMSEPVLTESGVHIILRT 156
+ + + G + + K + A L G +SE E + IL+
Sbjct: 205 PRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKI 261
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
periplasmic molecular chaperone, membrane protein
folding, GRAM negative bacteria; 3.00A {Escherichia
coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Length = 408
Score = 79.0 bits (194), Expect = 4e-18
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 71 NITRSKEEAIELVKSYREQINTGKASFGELASKFS-DCSSAKRSGDLGPFGRGTMQKPFE 129
+ + E+A ++ I +GK +F A +FS D SA + GDLG F
Sbjct: 275 SPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFR 334
Query: 130 DAAFSLKVGEMSEPVLTESGVHII 153
DA L G+MS PV + G H+I
Sbjct: 335 DALTRLNKGQMSAPVHSSFGWHLI 358
Score = 71.6 bits (175), Expect = 1e-15
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 76 KEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSL 135
EA ++ +Q G A FG+LA S A G +G + F A +
Sbjct: 172 VNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTA 230
Query: 136 KVGEMSEPVLTESGVHII 153
K G++ P+ + G HI+
Sbjct: 231 KKGDIVGPIRSGVGFHIL 248
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain
group IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 64.9 bits (158), Expect = 3e-15
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKH 58
M + LPAGWE R S S YY N T+ES+W+ P + + +
Sbjct: 3 MVNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPA-------DTDMETLKMYMATY 53
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 54.5 bits (132), Expect = 2e-11
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42
G LP GWE+R+ G YY++ K + WDRP+ P+
Sbjct: 4 GSSGLPPGWEQRVD-QHGRVYYVDHVEKRTTWDRPSGPSSG 43
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 49.4 bits (119), Expect = 2e-09
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
G LP GWE+++ + G YY+N + +QW RP+
Sbjct: 1 GSPPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPS 35
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 48.9 bits (117), Expect = 3e-09
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
G LP GW+ +S G YY+N T E+ W+RP+
Sbjct: 4 GSSGLPPGWQSYLS-PQGRRYYVNTTTNETTWERPS 38
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 48.9 bits (117), Expect = 4e-09
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASG 44
D LP GW + G YY++ T + W P + +SG
Sbjct: 8 EDLPLPPGWSVDWT-MRGRKYYIDHNTNTTHWSHPLESGPSSG 49
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
PDB: 2lb2_A*
Length = 36
Score = 48.3 bits (116), Expect = 5e-09
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
G LP+GWE+R + G YY+N + + W RP
Sbjct: 1 GSPGLPSGWEERKD-AKGRTYYVNHNNRTTTWTRPI 35
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 47.9 bits (115), Expect = 6e-09
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
LP GWE+R+ + G YY++ +T+ + W RPT
Sbjct: 7 LPPGWERRVD-NMGRIYYVDHFTRTTTWQRPT 37
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 48.4 bits (116), Expect = 6e-09
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39
D LPAGWE + SSG Y+ N + + W P K
Sbjct: 5 DDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA 41
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 48.0 bits (115), Expect = 7e-09
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAE 41
LP GWE+R G YY N+ T + W+RPT E
Sbjct: 7 MPLPPGWERRTD-VEGKVYYFNVRTLTTTWERPTIILE 43
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 47.6 bits (114), Expect = 1e-08
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40
+G LP GWE R + ++G Y+++ + +Q+ P A
Sbjct: 3 LGSGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLSA 41
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; BAI1-associated protein 1
(BAP-1); NMR {Homo sapiens}
Length = 49
Score = 47.4 bits (113), Expect = 2e-08
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42
+ ELPAGWEK YY++ +++Q++ P+ P+
Sbjct: 11 ELELPAGWEKIED-PVYGIYYVDHINRKTQYENPSGPSSG 49
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 46.0 bits (110), Expect = 3e-08
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
+ LP GWE+ M+ G YY+N K + W P
Sbjct: 3 MEGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDP 36
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
{Campylobacter jejuni}
Length = 252
Score = 49.5 bits (118), Expect = 6e-08
Identities = 6/94 (6%), Positives = 21/94 (22%), Gaps = 8/94 (8%)
Query: 68 RDDNITRSKEEAIELVKSYREQINTGK--------ASFGELASKFSDCSSAKRSGDLGPF 119
S + A + + +++ ++ + +
Sbjct: 108 SMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNASL 167
Query: 120 GRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
+ VG S + ++G +
Sbjct: 168 NTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELY 201
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 47.3 bits (112), Expect = 6e-08
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42
ELP GWE + + G ++++ ++ + + P P +
Sbjct: 70 RLELPRGWEIKTDQQ-GKSFFVDHNSRATTFIDPRIPLQN 108
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 57
Score = 45.9 bits (109), Expect = 6e-08
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGP 46
LP WE + +G Y+++ TK + W P + GP
Sbjct: 14 PLPENWEMAYT-ENGEVYFIDHNTKTTSWLDPRCLNKQQSGP 54
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 45.4 bits (108), Expect = 8e-08
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42
LP GWE R + +G ++++ TK + W+ P A
Sbjct: 9 EQGFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRLKIPA 48
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 44.9 bits (107), Expect = 1e-07
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE R++ +G ++++ TK + W+ P
Sbjct: 6 QSFLPPGWEMRIA-PNGRPFFIDHNTKTTTWEDP 38
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 49
Score = 44.9 bits (106), Expect = 1e-07
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEA 42
E LP GWE+ S G YY++ K +Q+ P+ P+
Sbjct: 11 REGLPPGWERVESSEFG-TYYVDHTNKRAQYRHPSGPSSG 49
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 44.2 bits (105), Expect = 2e-07
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
+E LP W +++ +G ++++ ++ + W P
Sbjct: 7 EEEPLPPRWSMQVA-PNGRTFFIDHASRRTTWIDP 40
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex;
NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB:
2op7_A
Length = 53
Score = 44.3 bits (105), Expect = 2e-07
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
+ LP GWE R + ++G ++++ T+ + ++ P
Sbjct: 16 EGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDP 48
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY
motif, liddle syndrome, proline-rich, ligase; NMR
{Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A
2joc_A*
Length = 50
Score = 44.2 bits (105), Expect = 2e-07
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE+R + G +++N K++QW+ P
Sbjct: 8 DLGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDP 41
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 44.5 bits (105), Expect = 4e-07
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQ 48
LP GWEK++ S Y++N + +QW+ P + +
Sbjct: 9 ALGPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQGQEVSLINE 54
Score = 40.6 bits (95), Expect = 1e-05
Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
+ + LP GWE R + ++G ++++ T+ + ++ P
Sbjct: 52 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDP 86
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka,
transcription; NMR {Oryzias latipes}
Length = 46
Score = 43.4 bits (103), Expect = 4e-07
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAE 41
LP GWE+ ++ G YY+N K + W P
Sbjct: 8 ASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRLETR 46
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR
{} SCOP: k.22.1.1
Length = 37
Score = 42.9 bits (102), Expect = 5e-07
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40
LP GW++ + +G YY N TK S W P +
Sbjct: 2 MGLPPGWDEYKT-HNGKTYYYNHNTKTSTWTDPRMSS 37
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 44.5 bits (105), Expect = 5e-07
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39
+LP G+E+R + G Y+L+ T S W P P
Sbjct: 6 SPPDLPEGYEQRTT-QQGQVYFLHTQTGVSTWHDPRVP 42
Score = 43.7 bits (103), Expect = 1e-06
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPA 40
LP GWE R + ++G Y+++ + +Q+ P A
Sbjct: 51 EELGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLSA 89
>2yse_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI-1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 43.4 bits (102), Expect = 7e-07
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEAS 43
+ ELPAGWEK YY++ +++Q++ P A+
Sbjct: 11 ELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVLEAKRK 50
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 41.8 bits (99), Expect = 2e-06
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
G LP GWE R + G Y+++ + + + P
Sbjct: 4 GSSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDP 37
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 41.5 bits (98), Expect = 2e-06
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 1 MGDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
G LP GWE+ + + G Y++N T+ + W P
Sbjct: 3 SGSSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHP 37
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 40.3 bits (94), Expect = 1e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAE 41
GW+ + + G YY N T+E+ W P +
Sbjct: 41 RENGWKAAKT-ADGKVYYYNPTTRETSWTIPAFEKK 75
Score = 36.8 bits (85), Expect = 3e-04
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 8 AGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
+ W++ +SG YY N TK+S W++P
Sbjct: 2 SIWKEAKD-ASGRIYYYNTLTKKSTWEKP 29
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11,
protein binding; NMR {Homo sapiens}
Length = 92
Score = 40.4 bits (94), Expect = 2e-05
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRK 63
+ W + S G YY N TK+S W++P + +C K +
Sbjct: 10 SGAKSMWTEHKS-PDGRTYYYNTETKQSTWEKP-DDLKTPAEQLLSKCPWKEYKSDSGKT 67
Query: 64 PY 65
Y
Sbjct: 68 YY 69
Score = 34.3 bits (78), Expect = 0.004
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 10 WEKRMSRSSGHHYYLNIYTKESQWDRP 36
W++ S SG YY N TKES+W +P
Sbjct: 57 WKEYKS-DSGKTYYYNSQTKESRWAKP 82
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis;
NMR {Homo sapiens}
Length = 54
Score = 38.6 bits (90), Expect = 3e-05
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQ 48
+LP GWE+ + G ++++ K + + P P +
Sbjct: 11 DLPYGWEQETDEN-GQVFFVDHINKRTTYLDPRLAFTVDDNPTK 53
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo
sapiens} SCOP: b.72.1.1
Length = 55
Score = 38.6 bits (89), Expect = 4e-05
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39
D +LPAGW + + + YY +I T +QW+ P +
Sbjct: 16 TDSDLPAGWMRV--QDTSGTYYWHIPTGTTQWEPPGRA 51
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 37.3 bits (86), Expect = 8e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
LP GW K + YY ++ + +QW RPT
Sbjct: 5 SSGGLPPGWRKI--HDAAGTYYWHVPSGSTQWQRPT 38
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 36.6 bits (84), Expect = 3e-04
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRK 63
+ W + ++ S G+HYY ++ + SQW++P + + V+ + ++
Sbjct: 1 DPSKGRWVEGIT-SEGYHYYYDLISGASQWEKP-EGFQGDLKKTAVKTVWVEGLSEDGFT 58
Query: 64 PY 65
Y
Sbjct: 59 YY 60
Score = 33.1 bits (75), Expect = 0.005
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 17 SSGHHYYLNIYTKESQWDRP 36
G YY N T ES+W++P
Sbjct: 54 EDGFTYYYNTETGESRWEKP 73
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein
fragment, WW domain, triple-standed beta-sheet,
alpha-helix, nucleus, phosphorylation; NMR {Homo
sapiens}
Length = 52
Score = 35.4 bits (81), Expect = 5e-04
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39
+E + AGWEK SR YY N +T +S W+ P
Sbjct: 8 EELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 33.5 bits (76), Expect = 0.002
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 2 GDEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
G W + ++ S G+HYY ++ + SQW++P
Sbjct: 1 GSSGSSGRWVEGIT-SEGYHYYYDLISGASQWEKP 34
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 32.9 bits (75), Expect = 0.004
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 19 GHHYYLNIYTKESQWDRP 36
G YY N T+ES W +P
Sbjct: 20 GKVYYYNARTRESAWTKP 37
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1;
WW domain, beta sheet, Fe65, protein binding; 1.33A
{Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 32.4 bits (73), Expect = 0.006
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39
+LPAGW + + + YY +I T +QW+ P +
Sbjct: 3 DLPAGWMR--VQDTSGTYYWHIPTGTTQWEPPGRA 35
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 32.0 bits (73), Expect = 0.007
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 19 GHHYYLNIYTKESQWDRP 36
G YY N T ES W++P
Sbjct: 16 GKTYYYNNRTLESTWEKP 33
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 34.3 bits (78), Expect = 0.009
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 4 EELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
+ WE+ +S + YY+N T+ + WD P
Sbjct: 10 TSVQGPWERAIS-PNKVPYYINHETQTTCWDHPKM 43
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 31.8 bits (72), Expect = 0.009
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 19 GHHYYLNIYTKESQWDRP 36
G YY N TK+S W++P
Sbjct: 22 GRTYYYNTETKQSTWEKP 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.14
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 17/75 (22%)
Query: 77 EEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLK 136
E +E+V YR G + S + P G + F A
Sbjct: 1780 ESLVEVVF-YR-----GMT-MQVAVPRDELGRSNYGMIAINP---GRVAASFSQEALQYV 1829
Query: 137 V-------GEMSEPV 144
V G + E V
Sbjct: 1830 VERVGKRTGWLVEIV 1844
Score = 28.5 bits (63), Expect = 1.1
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 51/144 (35%)
Query: 20 HHYYLNIYTKESQWDRPTKPAEASGGPEQVQCSHLLVKHKESRKP-YS---WRD-----D 70
H + L PA + + + +++ K+ + P Y D
Sbjct: 428 HSHLL-------------VPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 71 NITRSKEEAIELVKSYREQINTGKASFGELASKFSDCSSAKRSGDLGPFGRGTMQKPFED 130
+I+ + I R + + + A+ D FG G
Sbjct: 474 SISERIVDCI-----IRLPVKWETTTQFK-ATHILD------------FGPGG------- 508
Query: 131 AAFSLKVGEMSEPVLTESGVHIIL 154
+ +G ++ +GV +I+
Sbjct: 509 ---ASGLGVLTHRNKDGTGVRVIV 529
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 0.93
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 19/89 (21%)
Query: 37 TKPAEASGGPEQVQCSHLLVKHKESRKP-YSWRDDNITRSKEEAIELVK--------SYR 87
+ + PE ++ K +E ++ D ++E E K
Sbjct: 75 AQADRLTQEPESIR------KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 88 EQINTGKASFGELASKFSDCSSAKRSGDL 116
EQ+ K + F + D+
Sbjct: 129 EQVEKNKINNRIADKAF----YQQPDADI 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.4
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 26/108 (24%)
Query: 62 RKPYSWRDDNI---TRSKEEAIELVKSYREQINTGKASF-------GELASKFSDC-SSA 110
R Y + I R + R+++ F + K
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 111 KRSGDL---GPFGRG------------TMQKPFEDAAFSLKVGEMSEP 143
+ + ++ G G G +Q + F L + + P
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 27.9 bits (63), Expect = 1.5
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 10/32 (31%)
Query: 114 GDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVL 145
G +G FG F L +PVL
Sbjct: 38 GGIGGFG----------GLFDLSALGYRQPVL 59
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 27.9 bits (63), Expect = 1.5
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 10/32 (31%)
Query: 114 GDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVL 145
G LG FG F L + EPVL
Sbjct: 36 GGLGGFG----------GMFDLSKFALEEPVL 57
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.5 bits (55), Expect = 3.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 19 GHHYYLNIYTKESQWDRP 36
++ N T+ S WDRP
Sbjct: 30 ERVFFYNPTTRLSMWDRP 47
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 26.7 bits (60), Expect = 3.9
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 10/32 (31%)
Query: 114 GDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVL 145
DLG F F LK +P+L
Sbjct: 8 VDLGGFA----------GLFDLKAAGFKDPLL 29
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 26.5 bits (59), Expect = 3.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASG 44
LP+GWE R+ ++ Y+++ TK + WD P P+
Sbjct: 9 LPSGWEMRL-TNTARVYFVDHNTKTTTWDDPRLPSSLDQ 46
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled
dodecamer, hyperthermophilic; 2.24A {Pyrococcus
horikoshii} PDB: 2cf4_A
Length = 332
Score = 25.3 bits (56), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 53 HLLVKHKESRKPYSWRDDNI---TRSKEEAIELVK 84
HL + + W D I SKEEA+ELVK
Sbjct: 116 HLS--LERDKSVIPWYDLVIDIGAESKEEALELVK 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.380
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,381,361
Number of extensions: 125091
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 75
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)