RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2677
(157 letters)
>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 117 bits (294), Expect = 2e-35
Identities = 73/117 (62%), Positives = 91/117 (77%)
Query: 40 AEASGGPEQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGE 99
G P +V+CSHLLVKH +SR+P SWR + ITR+KEEA+EL+ Y ++I +G+ F
Sbjct: 2 KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFES 61
Query: 100 LASKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRT 156
LAS+FSDCSSAK GDLG F RG MQKPFEDA+F+L+ GEMS PV T+SG+HIILRT
Sbjct: 62 LASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 118
>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 113 bits (284), Expect = 6e-34
Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 4/116 (3%)
Query: 46 PEQVQCSHLLVKHKESRKPYSWRDDN----ITRSKEEAIELVKSYREQINTGKASFGELA 101
+QV+ SH+L+KH+ SR+ SW+D +T ++E A+E +KS RE I +GKA+F E+A
Sbjct: 5 RDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVA 64
Query: 102 SKFSDCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHIILRTA 157
++ SDCSSAKR GDLG FGRG MQKPFE+A ++LKVG++S+ V T+SGVHII RTA
Sbjct: 65 TRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 120
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains
{Escherichia coli [TaxId: 562]}
Length = 108
Score = 72.1 bits (176), Expect = 7e-18
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFS- 105
+V H+L+K + E+A ++ I +GK +F A +FS
Sbjct: 5 TEVHARHILLKPSP------------IMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 52
Query: 106 DCSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
D SA + GDLG F DA L G+MS PV + G H+I
Sbjct: 53 DPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 100
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
[TaxId: 562]}
Length = 92
Score = 67.0 bits (163), Expect = 5e-16
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 22/107 (20%)
Query: 47 EQVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSD 106
+ H+LVK ++ A++L EQI G A FG+LA K S
Sbjct: 2 KTAAALHILVK-----------------EEKLALDL----LEQIKNG-ADFGKLAKKHSI 39
Query: 107 CSSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
C S KR GDLG F +G M F+ FS V E + P+ T+ G HII
Sbjct: 40 CPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 86
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains
{Escherichia coli [TaxId: 562]}
Length = 103
Score = 61.0 bits (147), Expect = 1e-13
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 48 QVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC 107
++ SH+L+ E+ EA ++ +Q G A FG+LA S
Sbjct: 2 ELNLSHILIPLPENPTS---------DQVNEAESQARAIVDQARNG-ADFGKLAIAHSAD 51
Query: 108 SSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSEPVLTESGVHII 153
A G +G + F A + K G++ P+ + G HI+
Sbjct: 52 QQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHIL 97
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
[TaxId: 9606]}
Length = 96
Score = 60.1 bits (145), Expect = 2e-13
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 29/112 (25%)
Query: 48 QVQCSHLLVKHKESRKPYSWRDDNITRSKEEAIELVKSYREQINTGKASFGELASKFSDC 107
V+ H+L + + +E E++ +G F E+A+++S+
Sbjct: 2 AVKVRHILCE-----------------KHGKIMEA----MEKLKSG-MRFNEVAAQYSED 39
Query: 108 SSAKRSGDLGPFGRGTMQKPFEDAAFSLKVGEMSE------PVLTESGVHII 153
+ + G RG+M PF++AAF+L V M + PV T+ G HII
Sbjct: 40 KARQGGDL-GWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHII 90
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 57.0 bits (138), Expect = 7e-13
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
+LP GWEKRMSRSSG YY N T SQW+RP+
Sbjct: 1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 48.2 bits (115), Expect = 2e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKP 39
D LPAGWE + SSG Y+ N + + W P K
Sbjct: 6 DVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA 41
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 47.8 bits (114), Expect = 4e-09
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 DEELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTKPAEASGG 45
LP GWE+R + G +++N K++QW+ P A G
Sbjct: 9 LGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRMQNVAITG 50
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 45.1 bits (107), Expect = 4e-08
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWEK++ S Y++N + +QW+ P
Sbjct: 12 PLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDP 42
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 44.2 bits (105), Expect = 6e-08
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
LP GWE R + ++G ++++ T+ + ++ P
Sbjct: 3 LPPGWEIRYT-AAGERFFVDHNTRRTTFEDP 32
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 37.8 bits (88), Expect = 2e-05
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 6 LPAGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
+ W + + + G YY N T ES W++P
Sbjct: 4 AVSEWTEYKT-ADGKTYYYNNRTLESTWEKP 33
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 35.6 bits (82), Expect = 1e-04
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 9 GWEKRMSRSSGHHYYLNIYTKESQWDRPT 37
GW+ + + G YY N T+E+ W P
Sbjct: 15 GWKAAKT-ADGKVYYYNPTTRETSWTIPA 42
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 29
Score = 32.4 bits (74), Expect = 0.002
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 17 SSGHHYYLNIYTKESQWDRP 36
+SG YY N TK+S W++P
Sbjct: 10 ASGRIYYYNTLTKKSTWEKP 29
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 32.5 bits (74), Expect = 0.002
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 8 AGWEKRMSRSSGHHYYLNIYTKESQWDRP 36
W + ++ S G+HYY ++ + SQW++P
Sbjct: 1 GRWVEGIT-SEGYHYYYDLISGASQWEKP 28
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein
HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.0 bits (73), Expect = 0.002
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 17 SSGHHYYLNIYTKESQWDRP 36
G YY N TK+S W++P
Sbjct: 9 PDGRTYYYNTETKQSTWEKP 28
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor
protein-binding family B member 1, APBB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.5 bits (66), Expect = 0.020
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 5 ELPAGWEKRMSRSSGHHYYLNIYTKESQWDRPTK 38
+LPAGW + + +SG YY +I T +QW+ P +
Sbjct: 2 DLPAGWMR-VQDTSGT-YYWHIPTGTTQWEPPGR 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.380
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,213
Number of extensions: 23837
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 20
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.8 bits)