BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2679
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EDL|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDN|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|G Chain G, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|H Chain H, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|I Chain I, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|J Chain J, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
Length = 133
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 84/105 (80%), Gaps = 11/105 (10%)
Query: 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG---------- 379
R ERDAFDTLFDH PDKL VVKKSLITFVNKHL K+NLEVT+L+TQF DG
Sbjct: 5 RFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 64
Query: 380 -GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
+FVPLH FYLTP++F+QKVHNV+FAF+LM D GL KPKARPED
Sbjct: 65 EDYFVPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPED 109
>pdb|2VZC|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin
pdb|2VZC|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin
pdb|2VZD|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin In Complex With Paxillin Ld1
Motif
pdb|2VZD|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin In Complex With Paxillin Ld1
Motif
pdb|2VZG|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha-Parvin In Complex With Paxillin Ld2
Motif
pdb|2VZI|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha-Parvin In Complex With Paxillin Ld4
Motif
Length = 131
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 83/105 (79%), Gaps = 11/105 (10%)
Query: 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG---------- 379
R ERDAFDTLFDH PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF DG
Sbjct: 3 RHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 62
Query: 380 -GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
G+FVPLH F+LTP +FEQKV NV+FAF+LMQD GL KPK RPED
Sbjct: 63 EGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPED 107
>pdb|2K2R|A Chain A, The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 COMPLEX
Length = 129
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 83/105 (79%), Gaps = 11/105 (10%)
Query: 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG---------- 379
R ERDAFDTLFDH PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF DG
Sbjct: 1 RHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 60
Query: 380 -GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
G+FVPLH F+LTP +FEQKV NV+FAF+LMQD GL KPK RPED
Sbjct: 61 EGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPED 105
>pdb|3KMW|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 129
Score = 146 bits (368), Expect = 4e-35, Method: Composition-based stats.
Identities = 71/101 (70%), Positives = 80/101 (79%), Gaps = 11/101 (10%)
Query: 334 DAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG-----------GFF 382
DAFDTLFDH PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF DG G+F
Sbjct: 5 DAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYF 64
Query: 383 VPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
VPLH F+LTP +FEQKV NV+FAF+LMQD GL KPK RPED
Sbjct: 65 VPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPED 105
>pdb|3KMU|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 129
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 78/101 (77%), Gaps = 11/101 (10%)
Query: 334 DAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHD-----------GGFF 382
DAFDTLFDH PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF D G+F
Sbjct: 5 DAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLXGLLEGYF 64
Query: 383 VPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
VPLH F+LTP +FEQKV NV+FAF+L QD GL KPK RPED
Sbjct: 65 VPLHSFFLTPDSFEQKVLNVSFAFELXQDGGLEKPKPRPED 105
>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycob Smegmatis
Length = 263
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 312 SHRTIKEEITSTYD---DLGMRCERDAFDTLFDHH 343
+ R +K+ I ++ GMR ERDAF +FD H
Sbjct: 209 AGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTH 243
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 348 QVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPL 385
+V KK+ +VNKHL K ++DL DG + L
Sbjct: 72 RVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISL 109
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 394 TFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARL--SRKISALQAQLEKECKLN 449
TF+ K +A+ + + L P+A PED FAK A L ++ + AL Q+ E K++
Sbjct: 287 TFDAKGELLAYKGEAL----LMTPEAAPEDFFAKEALLAYAQPVMALMQQVIAEAKVD 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,856,908
Number of Sequences: 62578
Number of extensions: 565053
Number of successful extensions: 1289
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 10
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)