Query psy2679
Match_columns 526
No_of_seqs 190 out of 220
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 22:23:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3631|consensus 100.0 3E-118 6E-123 879.6 19.8 337 3-435 1-354 (365)
2 PF04420 CHD5: CHD5-like prote 99.9 1.2E-25 2.6E-30 206.3 3.2 114 400-513 40-159 (161)
3 KOG4253|consensus 99.8 2.5E-19 5.5E-24 166.7 4.2 121 403-523 47-175 (175)
4 KOG0517|consensus 99.6 9.5E-16 2.1E-20 177.3 5.0 132 331-465 33-202 (2473)
5 KOG3631|consensus 99.4 8.3E-14 1.8E-18 139.8 3.2 78 248-326 135-216 (365)
6 PF00307 CH: Calponin homology 99.2 7.9E-11 1.7E-15 96.9 9.9 101 94-230 2-108 (108)
7 cd00014 CH Calponin homology d 99.2 6.3E-11 1.4E-15 97.6 7.4 102 93-230 3-107 (107)
8 smart00033 CH Calponin homolog 99.0 5.8E-10 1.3E-14 90.8 4.2 84 351-435 2-96 (103)
9 cd00014 CH Calponin homology d 98.8 2.1E-09 4.5E-14 88.6 3.6 86 350-435 2-98 (107)
10 PF00307 CH: Calponin homology 98.8 1.1E-08 2.3E-13 84.2 6.9 84 351-435 1-99 (108)
11 KOG0035|consensus 98.5 8.7E-09 1.9E-13 115.9 -1.8 104 330-435 10-122 (890)
12 COG5069 SAC6 Ca2+-binding acti 98.5 2.1E-08 4.5E-13 107.2 -1.5 89 347-435 7-105 (612)
13 KOG0517|consensus 98.4 6E-06 1.3E-10 98.3 15.8 213 93-449 50-307 (2473)
14 smart00033 CH Calponin homolog 98.2 4.3E-06 9.3E-11 68.2 7.7 69 94-162 3-74 (103)
15 KOG0046|consensus 97.4 0.00061 1.3E-08 74.5 8.9 210 85-435 253-486 (627)
16 KOG0046|consensus 93.9 0.047 1E-06 60.3 3.6 95 334-435 255-357 (627)
17 PF11971 CAMSAP_CH: CAMSAP CH 93.4 0.044 9.6E-07 47.0 1.8 70 357-426 1-83 (85)
18 PF11971 CAMSAP_CH: CAMSAP CH 91.4 0.24 5.3E-06 42.5 3.9 69 99-167 1-73 (85)
19 KOG2046|consensus 91.1 1.6 3.5E-05 43.1 9.5 104 90-230 24-130 (193)
20 KOG0516|consensus 89.4 0.11 2.5E-06 60.4 0.1 102 344-445 69-183 (1047)
21 PF01956 DUF106: Integral memb 84.5 3.2 7E-05 38.4 6.8 97 396-513 46-152 (168)
22 KOG0035|consensus 83.6 1.8 3.9E-05 50.7 5.6 208 84-435 19-236 (890)
23 PF05622 HOOK: HOOK protein; 81.4 3.3 7.1E-05 46.7 6.6 70 91-163 7-83 (713)
24 PF06294 DUF1042: Domain of Un 80.4 0.59 1.3E-05 44.0 0.3 78 354-434 1-90 (158)
25 KOG0518|consensus 62.1 4.1 8.9E-05 48.6 1.6 82 352-435 29-120 (1113)
26 COG5069 SAC6 Ca2+-binding acti 57.9 3.1 6.7E-05 46.4 -0.3 81 352-435 382-479 (612)
27 PF06294 DUF1042: Domain of Un 57.7 23 0.00049 33.5 5.5 69 96-166 1-71 (158)
28 PF09301 DUF1970: Domain of un 54.9 6.6 0.00014 35.3 1.3 30 463-492 7-37 (117)
29 KOG4112|consensus 48.1 11 0.00024 34.1 1.6 33 455-487 48-83 (101)
30 COG1523 PulA Type II secretory 35.8 21 0.00046 41.2 1.9 73 342-415 185-280 (697)
31 COG5199 SCP1 Calponin [Cytoske 32.8 1.3E+02 0.0028 29.7 6.2 109 86-229 8-116 (178)
32 KOG0670|consensus 32.2 14 0.0003 42.2 -0.3 79 401-513 544-623 (752)
33 PRK15471 chain length determin 31.8 71 0.0015 33.6 4.8 51 394-444 192-242 (325)
34 TIGR03474 incFII_RepA incFII f 29.5 2.4E+02 0.0053 29.6 7.9 130 217-383 63-193 (275)
35 PRK13750 replication protein; 28.5 2.8E+02 0.0061 29.3 8.2 130 217-383 71-201 (285)
36 PF05890 Ebp2: Eukaryotic rRNA 28.3 96 0.0021 32.0 4.9 56 394-451 81-136 (271)
37 PRK08561 rps15p 30S ribosomal 25.9 96 0.0021 30.0 4.1 75 362-454 40-114 (151)
38 PRK10381 LPS O-antigen length 23.1 1.4E+02 0.003 32.0 5.1 51 395-445 233-285 (377)
39 COG1598 Predicted nuclease of 22.1 1.2E+02 0.0027 25.1 3.6 36 377-412 12-50 (73)
40 cd03202 GST_C_etherase_LigE GS 22.1 1.9E+02 0.0042 25.3 5.0 71 93-165 2-76 (124)
41 PF08743 Nse4_C: Nse4 C-termin 21.5 66 0.0014 27.8 2.0 31 383-414 3-33 (93)
42 KOG3312|consensus 21.1 1.4E+02 0.0029 29.5 4.2 77 431-513 65-150 (186)
43 KOG0532|consensus 21.1 1.1E+02 0.0025 35.5 4.2 78 87-167 572-655 (722)
44 TIGR02904 spore_ysxE spore coa 21.0 3.6E+02 0.0077 27.0 7.3 93 354-447 47-148 (309)
45 PRK00046 murB UDP-N-acetylenol 20.8 31 0.00068 36.4 -0.1 20 494-513 109-128 (334)
46 PF14745 WASH-7_N: WASH comple 20.6 1.9E+02 0.0041 32.4 5.8 83 109-231 214-298 (567)
47 KOG2305|consensus 20.3 59 0.0013 34.1 1.7 59 367-427 13-71 (313)
48 PF12392 DUF3656: Collagenase 20.2 54 0.0012 29.0 1.2 30 358-388 71-103 (122)
No 1
>KOG3631|consensus
Probab=100.00 E-value=2.8e-118 Score=879.63 Aligned_cols=337 Identities=63% Similarity=0.989 Sum_probs=330.4
Q ss_pred CCCCCCCCCCCCCCCCCCCcchhhhhh-cccccccchhhHHHHHHHhhhhhcCCCCCCCCCCC-----cccccccccccc
Q psy2679 3 TLTRPKSPRPPVSAKKDDKDESFWDKI-GTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLA-----PEEYALEENEER 76 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~f~~k~-~tl~r~k~~~e~~~~~~eg~~ai~~~~~p~~~~~~-----p~~~~l~e~e~r 76 (526)
+++|||||+|. .+||+||++|+ |||+||||++|++++|+||++||++|..|...+++ |++..|+|||+|
T Consensus 1 ~~~~~kspt~~-----~~k~~~~~~kl~gtlarkkka~e~~~~qe~g~~~~~~e~~~~~lel~~~v~pp~~~~Leege~r 75 (365)
T KOG3631|consen 1 TLSRPKSPTPD-----EKKDPSFLGKLGGTLARKKKAPEVSHLQEEGANAINPEFSPDLLELPKGVEPPEDTELEEGEKR 75 (365)
T ss_pred CCCCCCCCCCC-----CcCCccHHHhccchhhhcccCcchhhhhhhccccCCCcccchhhhcccCCCCchhhhhhcCCce
Confidence 56899998875 48899999999 69999999999999999999999999999999998 999999999999
Q ss_pred cccCCCCCCCccHHHHHHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHH
Q psy2679 77 SMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVL 156 (526)
Q Consensus 77 ~~~~p~s~~dpk~~el~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl 156 (526)
+|++|+|+.||||+||+++||+|||++|++||||||+||||||||||||||+|||+++||+|+||||||+||||||++||
T Consensus 76 ~yl~p~sr~DpK~~el~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~QkqKLq~Vl 155 (365)
T KOG3631|consen 76 TYLDPTSRKDPKFEELVKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQKQKLQTVL 155 (365)
T ss_pred eccCCccccChhHHHHHHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhccCCCCCC
Q psy2679 157 EAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLP 236 (526)
Q Consensus 157 ~~v~~~l~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f~~~~~lp 236 (526)
|++|+.|++++|+ .||||++||+||++||||||||||.|||||+|||
T Consensus 156 eavnr~L~~~~~q---------------------------------~kWsvdsIh~Kdl~ailhLLVaLa~~frapirlP 202 (365)
T KOG3631|consen 156 EAVNRSLQLPEWQ---------------------------------AKWSVDSIHNKDLVAILHLLVALAKHFRAPIRLP 202 (365)
T ss_pred HHHHHHhcCchhh---------------------------------hccchhhhccchHHHHHHHHHHHHHHcCCCccCC
Confidence 9999999999998 7999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCCccchhhcccccchhhhhhhhhhccCCcceeeEE
Q psy2679 237 ENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTI 316 (526)
Q Consensus 237 ~nv~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 316 (526)
+||+|+|||+| |++|+++++.+
T Consensus 203 dnV~v~Vvvvq----------------------------------------------------------k~~g~lks~~i 224 (365)
T KOG3631|consen 203 DNVQVQVVVVQ----------------------------------------------------------KREGGLKSEKI 224 (365)
T ss_pred CceEEEEEEEE----------------------------------------------------------eccccchHHHH
Confidence 99999999999 89999999999
Q ss_pred EeeecccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCccccccccccccc-----------ceeeec
Q psy2679 317 KEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG-----------GFFVPL 385 (526)
Q Consensus 317 ~e~it~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaDG-----------gyFIpL 385 (526)
.|+||++.+++.++.+||||||||||+|||+++||+++++|||+||+|+|++|+||||||+|| |||+||
T Consensus 225 ~EqlT~~tt~l~~~~~rDaFDtLFd~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL 304 (365)
T KOG3631|consen 225 VEQLTTYTTDLDGRPERDAFDTLFDHAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPL 304 (365)
T ss_pred HHHHhhhhHhhcCCCchhhHHHHHhhCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeec
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccccCCCChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhH
Q psy2679 386 HDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 386 ~~f~LtP~~~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlki 435 (526)
|.|++||.++++|+|||++||++|+|.|+++++.+|+||+|+|+|.|++.
T Consensus 305 ~~F~Ltp~S~eekv~NVsfAfeLm~D~GL~kp~~rpeDIvN~D~KSTLRv 354 (365)
T KOG3631|consen 305 HHFYLTPNSFEEKVHNVSFAFELMKDGGLEKPKVRPEDIVNKDLKSTLRV 354 (365)
T ss_pred ceeecCCCCHHHHHHHHHHHHHHHHccCcCCCCCChHHhhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886
No 2
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=99.91 E-value=1.2e-25 Score=206.27 Aligned_cols=114 Identities=22% Similarity=0.356 Sum_probs=53.6
Q ss_pred hcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHHHHHHhhHhhhhcccchhhhHHHHHHH-HHHHHHHhhhc
Q psy2679 400 HNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCL-WVLIVAVAFMN 478 (526)
Q Consensus 400 hNVslALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eELEklnks~sa~kskfd~~it~a~~vl-~~l~~~liwwY 478 (526)
+........+++.--+..++|++|+|++|+|++|++||+.+||+++++++++.+++|++.++.+++++ +++.+++.|||
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLRFWY 119 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 33334444444444458899999999999999999999999999999999999999999999999855 67777779999
Q ss_pred cCcceEEeCCCCc-cccccccccC----Cceeechhhhhh
Q psy2679 479 STAPVVRIPQKWM-LPLSYFGYAP----WSIGFTSWMTIK 513 (526)
Q Consensus 479 rk~PVf~LP~gWf-~PLEwlLSfP----GSVSItvWl~Vc 513 (526)
|++|||+||+||| +|+||++||| |+||+++|++||
T Consensus 120 rk~pV~~lp~~~~p~p~~~lLSfP~~~~gaVsi~~W~~ac 159 (161)
T PF04420_consen 120 RKTPVFYLPKGWFPWPFEWLLSFPTAPLGAVSITVWLFAC 159 (161)
T ss_dssp ----------------------------------------
T ss_pred cCceEEEECchhhHHHHHHheecccCCCCceehHHHHHHh
Confidence 9999999999999 5999999999 999999999999
No 3
>KOG4253|consensus
Probab=99.76 E-value=2.5e-19 Score=166.68 Aligned_cols=121 Identities=23% Similarity=0.269 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHHHHHHhhHhhhhcccchhhhHHHHHHHHHHHHH-HhhhccCc
Q psy2679 403 AFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVA-VAFMNSTA 481 (526)
Q Consensus 403 slALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eELEklnks~sa~kskfd~~it~a~~vl~~l~~~-liwwYrk~ 481 (526)
+...++++|..-+...++++|.|++++|+.||+|||..|+|++.+.++++...++|.++.++|++.+...+ ++|.|++.
T Consensus 47 ~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs~n~~~q~~~~K~vlSv~f~vl~~~~~~~~~~K~ss~ 126 (175)
T KOG4253|consen 47 SQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQSKNKTAQAHLHKWVLSVAFYVLKIMYGKTPVYKLSSS 126 (175)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeeecCC
Confidence 34455666666668899999999999999999999999999999999999999999999999988655555 49999999
Q ss_pred ceEEeCCCCcc-ccccccccC----Cceeechhhhhh--hhhheeeeee
Q psy2679 482 PVVRIPQKWML-PLSYFGYAP----WSIGFTSWMTIK--IYYTYMFLIC 523 (526)
Q Consensus 482 PVf~LP~gWf~-PLEwlLSfP----GSVSItvWl~Vc--v~s~~~FLi~ 523 (526)
|++.+|.-|.+ |..|++++| ||||+|||.+|| |++.+.|.++
T Consensus 127 pv~~~Ptf~~~~w~~~~l~~p~~~~gsVsltiW~~a~~kvi~gv~~~~~ 175 (175)
T KOG4253|consen 127 PVTLFPTFVSGVWSQGWLYVPLHALGSVSLTIWVWALMKVINGVEFIVK 175 (175)
T ss_pred ceeeecchhccchhHHHHHHHHHHhCCcchhhhHHHHHHHHhheeeecC
Confidence 99999999998 999999999 999999999999 9988888753
No 4
>KOG0517|consensus
Probab=99.58 E-value=9.5e-16 Score=177.28 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=108.9
Q ss_pred cCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCcccccccccccccceeeeccc----ccc-CCC---ChhhhHhcH
Q psy2679 331 CERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHD----FYL-TPQ---TFEQKVHNV 402 (526)
Q Consensus 331 ~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaDGgyFIpL~~----f~L-tP~---~~~qKLhNV 402 (526)
+||..+-+| +.|+..+||||||+|||+||+++|++|.||++|++||..++-|.+ ..| .|+ +|-|+++||
T Consensus 33 FErsRIKaL---adERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENv 109 (2473)
T KOG0517|consen 33 FERSRIKAL---ADEREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENV 109 (2473)
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhh
Confidence 344444455 679999999999999999999999999999999999977775432 233 354 577999999
Q ss_pred HHHHHHHHHcCCCCCCCCChhhhcccchhhhhH-----------------------HHHHHHHHHHhhHhhh-------h
Q psy2679 403 AFAFQLMQDVGLAKPKARPEDEFAKHARLSRKI-----------------------SALQAQLEKECKLNAE-------S 452 (526)
Q Consensus 403 slALELLqd~GL~k~~IspeDIvagdaKLtlki-----------------------DKL~eELEklnks~sa-------~ 452 (526)
++||+||++..+.+.+|.|+|||+||.+||+|+ --.++-|--+++..|+ .
T Consensus 110 dKaLqFLkeqkVhLEniGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~ 189 (2473)
T KOG0517|consen 110 DKALQFLKEQKVHLENIGSHDIVDGNHRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNIT 189 (2473)
T ss_pred HHHHHHHHhcccccccCCcccccCCcchhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccc
Confidence 999999999999999999999999999999998 2355667778888887 5
Q ss_pred cccchhhhHHHHH
Q psy2679 453 CNKIKTMITSILN 465 (526)
Q Consensus 453 kskfd~~it~a~~ 465 (526)
.++-+|--+.+|.
T Consensus 190 nFTtSWRdGLaFN 202 (2473)
T KOG0517|consen 190 NFTTSWRDGLAFN 202 (2473)
T ss_pred cCccchhcchhHH
Confidence 6677788887776
No 5
>KOG3631|consensus
Probab=99.41 E-value=8.3e-14 Score=139.78 Aligned_cols=78 Identities=55% Similarity=0.793 Sum_probs=65.6
Q ss_pred eccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCCccchhhcccccchhhhhhhhhhccCC----cceeeEEEeeeccc
Q psy2679 248 LDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEG----SLSHRTIKEEITST 323 (526)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~e~it~~ 323 (526)
..||||+|||+||||||.+|+||||..||+|+|+ .||||+|||.|+++.|+||||++-+.= ++-.....+.++-.
T Consensus 135 lev~evtqse~~QkqKLq~Vleavnr~L~~~~~q-~kWsvdsIh~Kdl~ailhLLVaLa~~frapirlPdnV~v~Vvvvq 213 (365)
T KOG3631|consen 135 LEVAEVTQSEIGQKQKLQTVLEAVNRSLQLPEWQ-AKWSVDSIHNKDLVAILHLLVALAKHFRAPIRLPDNVQVQVVVVQ 213 (365)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHhcCchhh-hccchhhhccchHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEE
Confidence 6789999999999999999999999999999997 589999999999999999999997642 34444555666544
Q ss_pred ccc
Q psy2679 324 YDD 326 (526)
Q Consensus 324 ~~~ 326 (526)
...
T Consensus 214 k~~ 216 (365)
T KOG3631|consen 214 KRE 216 (365)
T ss_pred ecc
Confidence 433
No 6
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.22 E-value=7.9e-11 Score=96.86 Aligned_cols=101 Identities=32% Similarity=0.484 Sum_probs=88.9
Q ss_pred HHHHHHHhhhhccc--cccccchhhhhhhhHHHHHHHHHHccCcccccceec---ChHHHHHHHHHHHHHHHHHcCCCCC
Q psy2679 94 FVLIEWINDELADQ--RIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQ---SEEGQKQKLAIVLEAVNKALGLPRW 168 (526)
Q Consensus 94 ~~li~WiN~~L~~~--riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~---s~~~qkqkl~~vl~~v~~~l~~~~~ 168 (526)
+.|+.|||+.|... ..-|.|+.+||.||.+|.+|++++.+..++...+.+ +...++++++.+++++++.+|++..
T Consensus 2 ~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~ 81 (108)
T PF00307_consen 2 KELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPL 81 (108)
T ss_dssp HHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 56899999999988 788999999999999999999999999998888833 5688999999999999998988773
Q ss_pred CCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecc-cCchHHHHHHHHHHHHhcc
Q psy2679 169 SNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIH-SKNLVPILHLLVSLVRHFR 230 (526)
Q Consensus 169 ~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~-~knl~ail~LLVaLa~~f~ 230 (526)
. +.++|+ .+|..++|.+|.+|.++|+
T Consensus 82 ~------------------------------------~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 82 L------------------------------------SPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp S-------------------------------------HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred C------------------------------------CHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 2 578999 9999999999999999985
No 7
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.18 E-value=6.3e-11 Score=97.58 Aligned_cols=102 Identities=28% Similarity=0.447 Sum_probs=89.7
Q ss_pred HHHHHHHHhhhhccccc-cccchhhhhhhhHHHHHHHHHHccCcccccce-ecChHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy2679 93 IFVLIEWINDELADQRI-IVKDLEEDLYDGQILQKLLEKLNQEKLDVPEV-TQSEEGQKQKLAIVLEAVNKALGLPRWSN 170 (526)
Q Consensus 93 ~~~li~WiN~~L~~~ri-iVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev-~~s~~~qkqkl~~vl~~v~~~l~~~~~~~ 170 (526)
.+.+++|||+.+.+... -|.|+.+||.||.+|.+|++.+.+..++.... +.+...++++++.+++++.+ +|++.
T Consensus 3 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~-~gi~~--- 78 (107)
T cd00014 3 KEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEK-LGVPV--- 78 (107)
T ss_pred HHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHH-cCCce---
Confidence 35789999999999997 79999999999999999999999988877776 56668889999999999977 77765
Q ss_pred CcccccccccccchhHHHHHHHHhhCCCcccCCccceeecc-cCchHHHHHHHHHHHHhcc
Q psy2679 171 TKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIH-SKNLVPILHLLVSLVRHFR 230 (526)
Q Consensus 171 ~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~-~knl~ail~LLVaLa~~f~ 230 (526)
..++.++|+ .+|..+++.+|.+|.+||.
T Consensus 79 --------------------------------~~~~~~Dl~~~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 79 --------------------------------VNFDAEDLVEDGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred --------------------------------eccCHHHHhhCCCceeeHHHHHHHHHhhC
Confidence 135689999 9999999999999999984
No 8
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.95 E-value=5.8e-10 Score=90.81 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhccc-Ccccccccccccccceeeec---------c-ccccCCCChhhhHhcHHHHHHHHHHcCCCCCCC
Q psy2679 351 KKSLITFVNKHLAKV-NLEVTDLDTQFHDGGFFVPL---------H-DFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKA 419 (526)
Q Consensus 351 KkTf~~FVNkHL~Kl-nL~VtDLetqFaDGgyFIpL---------~-~f~LtP~~~~qKLhNVslALELLqd~GL~k~~I 419 (526)
++++++|||++|.+. +..|+|+.++|+||..|+-| . .+...|.++.++++|++.|++++++.|.....+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~ 81 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF 81 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence 578999999999998 59999999999999555532 1 122246678899999999999999999888999
Q ss_pred CChhhhcccchhhhhH
Q psy2679 420 RPEDEFAKHARLSRKI 435 (526)
Q Consensus 420 speDIvagdaKLtlki 435 (526)
+++|+++++ |.++++
T Consensus 82 ~~~Dl~~~~-k~~~~v 96 (103)
T smart00033 82 EPEDLVEGN-KLILGV 96 (103)
T ss_pred CHHHHhhcc-hHHHHH
Confidence 999999999 888765
No 9
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=98.84 E-value=2.1e-09 Score=88.61 Aligned_cols=86 Identities=19% Similarity=0.327 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcccCc-ccccccccccccceeeecc---------ccccCCCChhhhHhcHHHHHHHHHHcCCCCCCC
Q psy2679 350 VKKSLITFVNKHLAKVNL-EVTDLDTQFHDGGFFVPLH---------DFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKA 419 (526)
Q Consensus 350 VKkTf~~FVNkHL~KlnL-~VtDLetqFaDGgyFIpL~---------~f~LtP~~~~qKLhNVslALELLqd~GL~k~~I 419 (526)
+++++++|||.++..-+. .|+|+.++|+||..|+-|. .....|.+..++++|++.+++.+++.|++...+
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~ 81 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNF 81 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceecc
Confidence 578999999999999987 8999999999995555321 122226788899999999999999999988789
Q ss_pred CChhhh-cccchhhhhH
Q psy2679 420 RPEDEF-AKHARLSRKI 435 (526)
Q Consensus 420 speDIv-agdaKLtlki 435 (526)
.++|++ .+|.|..+..
T Consensus 82 ~~~Dl~~~~n~~~vl~~ 98 (107)
T cd00014 82 DAEDLVEDGDEKLVLGL 98 (107)
T ss_pred CHHHHhhCCCceeeHHH
Confidence 999999 9999988654
No 10
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.81 E-value=1.1e-08 Score=84.25 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhccc--Ccccccccccccccceee-------e----ccccccCCCChhhhHhcHHHHHHHHHH-cCCCC
Q psy2679 351 KKSLITFVNKHLAKV--NLEVTDLDTQFHDGGFFV-------P----LHDFYLTPQTFEQKVHNVAFAFQLMQD-VGLAK 416 (526)
Q Consensus 351 KkTf~~FVNkHL~Kl--nL~VtDLetqFaDGgyFI-------p----L~~f~LtP~~~~qKLhNVslALELLqd-~GL~k 416 (526)
++++++|||.||.+. +..|+|+.++|+||..|+ | ......++.+..++.+|++.|++.+++ .|++.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 478999999999998 799999999999994444 2 222211112677999999999999999 89987
Q ss_pred CCCCChhhh-cccchhhhhH
Q psy2679 417 PKARPEDEF-AKHARLSRKI 435 (526)
Q Consensus 417 ~~IspeDIv-agdaKLtlki 435 (526)
.- +++|++ .++.+..+..
T Consensus 81 ~~-~~~dl~~~~~~~~vl~~ 99 (108)
T PF00307_consen 81 LL-SPEDLVEKGDEKSVLSF 99 (108)
T ss_dssp TS--HHHHHSTT-HHHHHHH
T ss_pred CC-CHHHHHHCcCHHHHHHH
Confidence 77 999999 8888887654
No 11
>KOG0035|consensus
Probab=98.54 E-value=8.7e-09 Score=115.92 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=87.3
Q ss_pred ccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhc-ccCcccccccccccccceeeecccc----c----cCCCChhhhHh
Q psy2679 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLA-KVNLEVTDLDTQFHDGGFFVPLHDF----Y----LTPQTFEQKVH 400 (526)
Q Consensus 330 ~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~-KlnL~VtDLetqFaDGgyFIpL~~f----~----LtP~~~~qKLh 400 (526)
+.+.-|++.+|+-+++| ++++||++|||.||+ +.+-++.++|.||+||...+=|..+ . .+..++.||++
T Consensus 10 ~e~~~a~~~~~~~~~e~--~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~~~~~r~hk~E 87 (890)
T KOG0035|consen 10 REEEWAAKFLLTPAWEK--VQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPTRGKMRVHKLE 87 (890)
T ss_pred hhhHHHHHhhcCccHHH--HhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCCCCccchhhhc
Confidence 44556889999766665 678999999999999 9999999999999999554422111 1 22367899999
Q ss_pred cHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhH
Q psy2679 401 NVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 401 NVslALELLqd~GL~k~~IspeDIvagdaKLtlki 435 (526)
||+.|+++....|+++++|.+++|++++.|+++++
T Consensus 88 n~~~~l~~~~sk~v~~~~iga~eivd~n~~~~l~~ 122 (890)
T KOG0035|consen 88 NVNKALVFIESKGVKLVSIGAEEIVDGNLKLTLGL 122 (890)
T ss_pred cccceEEEeccccccccccchhhhcCcchhhhhHH
Confidence 99999999999999999999999999999999985
No 12
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=98.45 E-value=2.1e-08 Score=107.18 Aligned_cols=89 Identities=24% Similarity=0.320 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhcccC-cccccccccccccceee---------eccccccCCCChhhhHhcHHHHHHHHHHcCCCC
Q psy2679 347 LQVVKKSLITFVNKHLAKVN-LEVTDLDTQFHDGGFFV---------PLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAK 416 (526)
Q Consensus 347 l~vVKkTf~~FVNkHL~Kln-L~VtDLetqFaDGgyFI---------pL~~f~LtP~~~~qKLhNVslALELLqd~GL~k 416 (526)
-.+|||||++|+|..|..-+ -++.||++|..||..+. ..++|.-+|.++.|+.+||+.++++.+-.|++.
T Consensus 7 q~vq~ktftkw~nekL~s~~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~kg~~l 86 (612)
T COG5069 7 QKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGKGVKL 86 (612)
T ss_pred HHHhhccchHHHhHHHhhcccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccCCcee
Confidence 45899999999999999855 67999999999996555 367899999999999999999999999999999
Q ss_pred CCCCChhhhcccchhhhhH
Q psy2679 417 PKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 417 ~~IspeDIvagdaKLtlki 435 (526)
.+|.|+|||+|+.|+++|+
T Consensus 87 ~Nigp~divdGn~klilGl 105 (612)
T COG5069 87 FNIGPQDIVDGNPKLILGL 105 (612)
T ss_pred eeeCccccccCchhhhhee
Confidence 9999999999999998886
No 13
>KOG0517|consensus
Probab=98.38 E-value=6e-06 Score=98.29 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=155.8
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHHHHHHH-HcCCCCCCCC
Q psy2679 93 IFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNK-ALGLPRWSNT 171 (526)
Q Consensus 93 ~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl~~v~~-~l~~~~~~~~ 171 (526)
.+....|+|+-|+.-.+=|.||=.||.||..|-+|||.|.|++|.-|-=----.---+|+...|+|+.. ...++.-.
T Consensus 50 KKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEniG-- 127 (2473)
T KOG0517|consen 50 KKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLENIG-- 127 (2473)
T ss_pred HHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccccCC--
Confidence 477899999999998899999999999999999999999999999885433334445777788888763 44444322
Q ss_pred cccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhccCCCCCCCCeEEEEEEEEeccc
Q psy2679 172 KWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVP 251 (526)
Q Consensus 172 ~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f~~~~~lp~nv~v~vv~~~~~~~ 251 (526)
.++|+++|=-=||-|+--+--+|+ ++.|+++
T Consensus 128 -----------------------------------shDIVDGN~rL~LGLIWTIILRFQ----------Iq~I~ie---- 158 (2473)
T KOG0517|consen 128 -----------------------------------SHDIVDGNHRLILGLIWTIILRFQ----------IQDISIE---- 158 (2473)
T ss_pred -----------------------------------cccccCCcchhhHHHHHHHHHhee----------eeeeEee----
Confidence 378899998888888888888886 5666665
Q ss_pred cccchhhhhHHHHHHHHHHHHhhcCCCCCCCCccchhhcccccchhhhhhhhhhccCCcceeeEEEeeecccccccCCcc
Q psy2679 252 EVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRC 331 (526)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~e~it~~~~~~~~~~ 331 (526)
+.+|. -
T Consensus 159 ------------------------------------------------------~edn~--------------------E 164 (2473)
T KOG0517|consen 159 ------------------------------------------------------TEDNR--------------------E 164 (2473)
T ss_pred ------------------------------------------------------cccch--------------------h
Confidence 22220 0
Q ss_pred CCChhhhhhcCCChhHHHHHHHHHHHHHHhhccc-Ccccccccccccccceeee--------ccccc-cCCCChhhhHhc
Q psy2679 332 ERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKV-NLEVTDLDTQFHDGGFFVP--------LHDFY-LTPQTFEQKVHN 401 (526)
Q Consensus 332 ~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~Kl-nL~VtDLetqFaDGgyFIp--------L~~f~-LtP~~~~qKLhN 401 (526)
.| --|.+|+=||-.+=+-- |..|+|.-|..+||.-|=. |-+|. ++ ...-++|
T Consensus 165 ~r---------------SAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~---k~na~~N 226 (2473)
T KOG0517|consen 165 TR---------------SAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLK---KSNALYN 226 (2473)
T ss_pred hh---------------hHHHHHHHHHHhhccCCCCcccccCccchhcchhHHHHHHhcCcchhhhcccC---CCchhhH
Confidence 11 34677889998776543 6889999999999944432 33452 33 3456889
Q ss_pred HHHHHHHHHH-cCCCCCCCCChhhhc--ccchhhhhH-------------------------------HHHHHHHHHHhh
Q psy2679 402 VAFAFQLMQD-VGLAKPKARPEDEFA--KHARLSRKI-------------------------------SALQAQLEKECK 447 (526)
Q Consensus 402 VslALELLqd-~GL~k~~IspeDIva--gdaKLtlki-------------------------------DKL~eELEklnk 447 (526)
++.||+.-.. .|| -.=.+|+||.. -|.|++.-. +||.++||.+..
T Consensus 227 L~~AFdvAE~~LGi-a~LLDpEDV~v~~PDEKSIITYV~~YYHyFsKmK~~~v~gKRIgkVl~~lme~ekm~~~YE~Las 305 (2473)
T KOG0517|consen 227 LQHAFDVAEQELGI-AKLLDPEDVNVEQPDEKSIITYVVTYYHYFSKMKQLAVEGKRIGKVLDQLMETEKMIEQYEGLAS 305 (2473)
T ss_pred HHHHHHHHHHHcCc-hhcCCHhhcCccCCCcchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886 477 45678999875 456666433 778888888776
Q ss_pred Hh
Q psy2679 448 LN 449 (526)
Q Consensus 448 s~ 449 (526)
.+
T Consensus 306 dL 307 (2473)
T KOG0517|consen 306 DL 307 (2473)
T ss_pred HH
Confidence 65
No 14
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.24 E-value=4.3e-06 Score=68.16 Aligned_cols=69 Identities=28% Similarity=0.408 Sum_probs=58.9
Q ss_pred HHHHHHHhhhhccc-cccccchhhhhhhhHHHHHHHHHHccCccccccee-cC-hHHHHHHHHHHHHHHHHH
Q psy2679 94 FVLIEWINDELADQ-RIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVT-QS-EEGQKQKLAIVLEAVNKA 162 (526)
Q Consensus 94 ~~li~WiN~~L~~~-riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~-~s-~~~qkqkl~~vl~~v~~~ 162 (526)
+.++.|+|..+... ..-|.|+.+|+.||.+|-+|++.+....++...+. +. ...++++++..++++.+.
T Consensus 3 ~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~ 74 (103)
T smart00033 3 KTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKL 74 (103)
T ss_pred HHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHc
Confidence 56899999999987 47899999999999999999999999888776654 22 356689999999999877
No 15
>KOG0046|consensus
Probab=97.38 E-value=0.00061 Score=74.50 Aligned_cols=210 Identities=21% Similarity=0.326 Sum_probs=136.5
Q ss_pred CCccHHHHH-----HHHHHHHhhhhcccc--ccccchhhhhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHHH
Q psy2679 85 DDPKLQELI-----FVLIEWINDELADQR--IIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLE 157 (526)
Q Consensus 85 ~dpk~~el~-----~~li~WiN~~L~~~r--iiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl~ 157 (526)
++..++||. +.|..|.|-.|+.-. -+|.+..-|+-||..-.+||..++.+.=++.-..-+ +--++-+.||+
T Consensus 253 d~e~lEelm~L~PEkiLLrW~N~HL~kag~~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~--d~l~RA~~vLq 330 (627)
T KOG0046|consen 253 DGETLEELMRLPPEKILLRWMNYHLKKAGWKKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQET--DDLERAELVLQ 330 (627)
T ss_pred CCccHHHHhcCCHHHHHHHHHHHHHHhcccceehhhhhhhhccHHHHHHHHHHhccccCCccccccC--ChHhHHHHHHH
Confidence 444566665 589999999998765 689999999999999999999999988887744444 33444456777
Q ss_pred HHHHHcCCCCCCCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHh-c--cCCCC
Q psy2679 158 AVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRH-F--RAPVR 234 (526)
Q Consensus 158 ~v~~~l~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~-f--~~~~~ 234 (526)
...+. ..+. -=+..+|++++- -|.+|.++| | +|.+.
T Consensus 331 ~Aekl---~Cr~----------------------------------~ltp~dvV~G~~----kLNLAFVA~lFn~~pgL~ 369 (627)
T KOG0046|consen 331 QAEKL---DCRR----------------------------------YLTPTDVVAGNP----KLNLAFVANLFNTHPGLE 369 (627)
T ss_pred HHHhc---CCcc----------------------------------ccCHHHHhcCCc----hhhHHHHHHhcccCCCCC
Confidence 66432 1111 012355555553 244444333 2 22222
Q ss_pred CCCCeEEEEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCCccchhhcccccchhhhhhhhhhccCCcceee
Q psy2679 235 LPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHR 314 (526)
Q Consensus 235 lp~nv~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 314 (526)
.|++-.
T Consensus 370 ~~~~~~-------------------------------------------------------------------------- 375 (627)
T KOG0046|consen 370 KPENEE-------------------------------------------------------------------------- 375 (627)
T ss_pred Cccccc--------------------------------------------------------------------------
Confidence 221110
Q ss_pred EEEeeecccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCcccccccccccccceeeec---------
Q psy2679 315 TIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPL--------- 385 (526)
Q Consensus 315 ~~~e~it~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaDGgyFIpL--------- 385 (526)
..|..|..+ .-.|. -++|..|.|. | -++..|+++..|++||--+.-+
T Consensus 376 -~~e~~~~~~------------------~~~re---er~fr~WmNS-l-gv~p~vn~~f~Dl~dglVllq~~dki~pg~V 431 (627)
T KOG0046|consen 376 -IAEMMTEDE------------------EESRE---ERTFRLWMNS-L-GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSV 431 (627)
T ss_pred -hhcccchhH------------------hHHHH---HHHHHHHHHh-c-CCcHHHHHHHHhhhhhhHHHHHHHHccCCcc
Confidence 011111111 11111 1799999996 2 2457899999999999333321
Q ss_pred --cccccCC---CChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhH
Q psy2679 386 --HDFYLTP---QTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 386 --~~f~LtP---~~~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlki 435 (526)
..-+.+| ..+..|++|-+.|.++.+..+..++.|.-.||++||.+||+.+
T Consensus 432 nwk~vnKp~~~~~~~~kklENcNyav~lGk~~~FSLVgi~G~DI~dGNk~LtLAl 486 (627)
T KOG0046|consen 432 NWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKFSLVGIAGQDIVDGNKTLTLAL 486 (627)
T ss_pred chhhccCCCCcccccHHHhhcchHHHHHHhhcceeeeccccccccccchHhHHHH
Confidence 1123332 2457889999999999999999999999999999999999876
No 16
>KOG0046|consensus
Probab=93.93 E-value=0.047 Score=60.32 Aligned_cols=95 Identities=19% Similarity=0.354 Sum_probs=66.1
Q ss_pred ChhhhhhcCCChhHHHHHHHHHHHHHHhhcccC--ccccccccccccc-ceeeeccc---cccC--CCChhhhHhcHHHH
Q psy2679 334 DAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVN--LEVTDLDTQFHDG-GFFVPLHD---FYLT--PQTFEQKVHNVAFA 405 (526)
Q Consensus 334 d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~Kln--L~VtDLetqFaDG-gyFIpL~~---f~Lt--P~~~~qKLhNVslA 405 (526)
+..+.|....|||+ +++|+|=||++.| -.|++...|+.|| -|+.-|.. -+-. |-...-.++--..-
T Consensus 255 e~lEelm~L~PEki------LLrW~N~HL~kag~~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~d~l~RA~~v 328 (627)
T KOG0046|consen 255 ETLEELMRLPPEKI------LLRWMNYHLKKAGWKKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQETDDLERAELV 328 (627)
T ss_pred ccHHHHhcCCHHHH------HHHHHHHHHHhcccceehhhhhhhhccHHHHHHHHHHhccccCCccccccCChHhHHHHH
Confidence 44578899999975 8999999999999 5589999999999 33332111 1111 22222333333344
Q ss_pred HHHHHHcCCCCCCCCChhhhcccchhhhhH
Q psy2679 406 FQLMQDVGLAKPKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 406 LELLqd~GL~k~~IspeDIvagdaKLtlki 435 (526)
++.-++.|. ++-..|.|+|+|+.|+.+-.
T Consensus 329 Lq~Aekl~C-r~~ltp~dvV~G~~kLNLAF 357 (627)
T KOG0046|consen 329 LQQAEKLDC-RRYLTPTDVVAGNPKLNLAF 357 (627)
T ss_pred HHHHHhcCC-ccccCHHHHhcCCchhhHHH
Confidence 666667777 56678999999999999865
No 17
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=93.42 E-value=0.044 Score=46.96 Aligned_cols=70 Identities=27% Similarity=0.395 Sum_probs=54.6
Q ss_pred HHHHhhcccCccccccccccccc-------ce----eeeccccccCCC-ChhhhHhcHHHHHHHHHHc-CCCCCCCCChh
Q psy2679 357 FVNKHLAKVNLEVTDLDTQFHDG-------GF----FVPLHDFYLTPQ-TFEQKVHNVAFAFQLMQDV-GLAKPKARPED 423 (526)
Q Consensus 357 FVNkHL~KlnL~VtDLetqFaDG-------gy----FIpL~~f~LtP~-~~~qKLhNVslALELLqd~-GL~k~~IspeD 423 (526)
|+|..-.--+.+|.|+.++|+|| .| .||++++.+.|. +-...++|..+..++-.+. |.......++|
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ed 80 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPED 80 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHH
Confidence 34444455678999999999999 33 346777776655 6778899999999998884 89888999999
Q ss_pred hhc
Q psy2679 424 EFA 426 (526)
Q Consensus 424 Iva 426 (526)
++.
T Consensus 81 l~~ 83 (85)
T PF11971_consen 81 LLY 83 (85)
T ss_pred Hhc
Confidence 874
No 18
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=91.44 E-value=0.24 Score=42.47 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=56.4
Q ss_pred HHhhhhccccccccchhhhhhhhHHHHHHHHHHccCcccccceecCh----HHHHHHHHHHHHHHHHHcCCCC
Q psy2679 99 WINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSE----EGQKQKLAIVLEAVNKALGLPR 167 (526)
Q Consensus 99 WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~----~~qkqkl~~vl~~v~~~l~~~~ 167 (526)
|.|..-.....-|+|+-+|+-||.+|..|+-..--..|+..+|.+.+ +--..++..+.++.++.|+...
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~ 73 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSC 73 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCc
Confidence 55566666667899999999999999999999999999999988544 3336678888899999887654
No 19
>KOG2046|consensus
Probab=91.11 E-value=1.6 Score=43.10 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCccccccee---cChHHHHHHHHHHHHHHHHHcCCC
Q psy2679 90 QELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVT---QSEEGQKQKLAIVLEAVNKALGLP 166 (526)
Q Consensus 90 ~el~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~---~s~~~qkqkl~~vl~~v~~~l~~~ 166 (526)
-|+.+-|.+||-.....+.=+=.|+.+=|-||+||-+|+.+|.. .+.-+. -..=-|.+++...+ ...+.+|++
T Consensus 24 ~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p---~~~~~~~~s~~~f~qmEnIs~Fi-~a~~~ygv~ 99 (193)
T KOG2046|consen 24 DELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYP---GVVKKINESKMAFVQMENISNFI-KAAKKYGVP 99 (193)
T ss_pred HHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCc---CcccccccccccHHHHHHHHHHH-HHHHhcCCC
Confidence 36777899999988666666678999999999999999999987 222222 12235666666555 333556665
Q ss_pred CCCCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhcc
Q psy2679 167 RWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFR 230 (526)
Q Consensus 167 ~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f~ 230 (526)
..+ .-=+++.--+||.-....-|.|||+.-+
T Consensus 100 ~~d---------------------------------~FqtvDLfE~kd~~~V~vtL~aLa~~a~ 130 (193)
T KOG2046|consen 100 EVD---------------------------------LFQTVDLFEGKDMAQVQVTLLALARKAQ 130 (193)
T ss_pred hhh---------------------------------cccccccccCCCHHHHHHHHHHHHHHHh
Confidence 533 2224788889999999999999998754
No 20
>KOG0516|consensus
Probab=89.35 E-value=0.11 Score=60.40 Aligned_cols=102 Identities=18% Similarity=0.072 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHHHHHHhhcccCcccccccccccc--cceeeec----cccc-----cCCCChhhhHhcHHHHHHHHHHc
Q psy2679 344 PDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHD--GGFFVPL----HDFY-----LTPQTFEQKVHNVAFAFQLMQDV 412 (526)
Q Consensus 344 PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaD--GgyFIpL----~~f~-----LtP~~~~qKLhNVslALELLqd~ 412 (526)
|+--.++|++|..|+|+||.++.-+|.|+.+++.+ ..+..-+ ...+ .....+.+.+.||+.++..|++.
T Consensus 69 ~~~~~~~k~~f~~~~~~~l~~~~~~ve~~~~~l~~~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~ 148 (1047)
T KOG0516|consen 69 PKEDLVQKKLFPDWLAKELEKVMKHVEDLYEDLRDLNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKED 148 (1047)
T ss_pred hHHHHHHHhccchhhHHHHHHhccchhHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHH
Confidence 55578999999999999999999999999998775 3221111 1111 11223446799999999999999
Q ss_pred CCCCCC--CCChhhhcccchhhhhHHHHHHHHHHH
Q psy2679 413 GLAKPK--ARPEDEFAKHARLSRKISALQAQLEKE 445 (526)
Q Consensus 413 GL~k~~--IspeDIvagdaKLtlkiDKL~eELEkl 445 (526)
+.+..+ +...++..++.++.++..+..-..-..
T Consensus 149 ~~el~~~~~~~~~~~~~~~~~~l~~~~ei~l~~Q~ 183 (1047)
T KOG0516|consen 149 LAELVNFLIRDAEIKLGNPELGLGLIWEIILHFQY 183 (1047)
T ss_pred HHHHHHhhcccchhhccchhhhhhhHHHHHHHHHH
Confidence 999999 999999999999999886654444333
No 21
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=84.49 E-value=3.2 Score=38.42 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=60.4
Q ss_pred hhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHHHHHHhhHhhhhcccchhhhHHHHHHHH-HHHHHH
Q psy2679 396 EQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLW-VLIVAV 474 (526)
Q Consensus 396 ~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eELEklnks~sa~kskfd~~it~a~~vl~-~l~~~l 474 (526)
..+..|...+.+.+++ +++.+-..++.+...++.+.+++....+.|=.... .+.+ ++...+
T Consensus 46 ~~~~~~~~~~~~~l~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~----~v~~i~i~~wi 107 (168)
T PF01956_consen 46 QKRMKEFQKRYRELRK--------------NGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVT----MVPQIPIFYWI 107 (168)
T ss_pred HHHHHHHHHHHHHHHH--------------cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Confidence 3445667777777776 55556666677777777777777654444332222 2222 333334
Q ss_pred hhhccCcceEEeCCCCcccccccccc-----C----Cceeechhhhhh
Q psy2679 475 AFMNSTAPVVRIPQKWMLPLSYFGYA-----P----WSIGFTSWMTIK 513 (526)
Q Consensus 475 iwwYrk~PVf~LP~gWf~PLEwlLSf-----P----GSVSItvWl~Vc 513 (526)
.|+|...++..+| |||..++-++ + --+|..+|.+.|
T Consensus 108 ~~~f~g~vv~klP---Fpl~~~f~~~~qrgl~~~d~~~~s~i~wYfL~ 152 (168)
T PF01956_consen 108 NYFFSGFVVAKLP---FPLTGRFKSMLQRGLEGLDVSYVSSISWYFLC 152 (168)
T ss_pred HHHhhhcceEEee---ccccHHHhHHhhcCCCCCcccHhHHHHHHHHH
Confidence 6777888998999 6554443212 3 467889999999
No 22
>KOG0035|consensus
Probab=83.59 E-value=1.8 Score=50.73 Aligned_cols=208 Identities=29% Similarity=0.393 Sum_probs=131.5
Q ss_pred CCCccHHHHHH-HHHHHHhhhhc-cccccccchhhhhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHHHHHHH
Q psy2679 84 YDDPKLQELIF-VLIEWINDELA-DQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNK 161 (526)
Q Consensus 84 ~~dpk~~el~~-~li~WiN~~L~-~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl~~v~~ 161 (526)
.-||-.+++.. ..-.|-|+.|. .-+==+-++|+|+-||..|--|+|-..|+.++.|.-. ---.| | ++.+|+
T Consensus 19 ~~~~~~e~~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~~~-~~r~h--k----~En~~~ 91 (890)
T KOG0035|consen 19 LLTPAWEKVQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPTRG-KMRVH--K----LENVNK 91 (890)
T ss_pred hcCccHHHHhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCCCC-ccchh--h----hccccc
Confidence 35677777764 47899999999 5556688999999999999999999999999988654 11111 1 233444
Q ss_pred HcCCCCCCCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhccCCCCCCCCeEE
Q psy2679 162 ALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSV 241 (526)
Q Consensus 162 ~l~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f~~~~~lp~nv~v 241 (526)
+|. -|-+|- -|+..+ -++.|.+.|++.++-++--|-..|- +++
T Consensus 92 ~l~------------~~~sk~------------v~~~~i-----ga~eivd~n~~~~l~~i~tlilr~~----i~~---- 134 (890)
T KOG0035|consen 92 ALV------------FIESKG------------VKLVSI-----GAEEIVDGNLKLTLGLIWTLILRFA----IQD---- 134 (890)
T ss_pred eEE------------Eecccc------------cccccc-----chhhhcCcchhhhhHHHHHhhcccc----ccc----
Confidence 443 332221 111111 2578999999988886666655542 000
Q ss_pred EEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCCccchhhcccccchhhhhhhhhhccCCcceeeEEEeeec
Q psy2679 242 GVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEIT 321 (526)
Q Consensus 242 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~e~it 321 (526)
+.+.. -.+ -++|.| -..++.|
T Consensus 135 -is~~~----------------------e~~---------------------------------a~egll---Lwcq~~T 155 (890)
T KOG0035|consen 135 -ISVEC----------------------ELS---------------------------------AKEGLL---LWCQRKT 155 (890)
T ss_pred -hhhhc----------------------chh---------------------------------hhhhhh---hheeccc
Confidence 00000 000 112211 1122233
Q ss_pred ccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCcccccccccccccceeeec-ccc--ccCC----CC
Q psy2679 322 STYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPL-HDF--YLTP----QT 394 (526)
Q Consensus 322 ~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaDGgyFIpL-~~f--~LtP----~~ 394 (526)
..| + |+.|++..+-..||.-|..+ |.+ .+.| .+
T Consensus 156 a~y---------------------~-------------------~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt 195 (890)
T KOG0035|consen 156 APY---------------------S-------------------NVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLT 195 (890)
T ss_pred CCc---------------------c-------------------ccccccceecccchHHHHHHHHhcChhhhhhhhhcC
Confidence 322 2 88899999999999777754 222 1222 14
Q ss_pred hhhhHhcHHHHHHHHHH-cCCCCCCCCChhhhcccchhhhhH
Q psy2679 395 FEQKVHNVAFAFQLMQD-VGLAKPKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 395 ~~qKLhNVslALELLqd-~GL~k~~IspeDIvagdaKLtlki 435 (526)
...+++|++.|++.-.. .|+ .+.++++|+++-..+..+.+
T Consensus 196 ~~~~~~n~~~A~~iAek~l~i-~r~ld~ed~~~~~~pde~ai 236 (890)
T KOG0035|consen 196 KQDPVENLNLAFDIAEKFLGI-PRLLDAEDIVEAAIPDEKAI 236 (890)
T ss_pred ccchhHHhhhhhhhhhhcCCc-ccccCccccccCCCCchhhh
Confidence 45679999999999998 565 67899999998877666665
No 23
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.40 E-value=3.3 Score=46.73 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCccccccee-----cCh--HHHHHHHHHHHHHHHHHc
Q psy2679 91 ELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVT-----QSE--EGQKQKLAIVLEAVNKAL 163 (526)
Q Consensus 91 el~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~-----~s~--~~qkqkl~~vl~~v~~~l 163 (526)
+|...||.|||+ +. -.-.+.++ +||.||++|.+.+..+...-++-+.+. .+. .--.+||..+++.+-...
T Consensus 7 ~l~~~Lv~Wv~t-f~-~~~~~~~~-~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~yy 83 (713)
T PF05622_consen 7 ELCDSLVTWVQT-FN-LSAPCSSY-EDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKSYY 83 (713)
T ss_dssp HHHHHHHHHHTT-----SS---SH-HHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-CC-CCCCcCCH-HHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 688899999999 32 22335565 499999999999999988776633221 111 225788888888876443
No 24
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=80.41 E-value=0.59 Score=43.98 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=47.7
Q ss_pred HHHHHHHhhcccCccccccccccccc--------cee---eeccccccCCCChhhhHhcHHHH-HHHHHHcCCCCCCCCC
Q psy2679 354 LITFVNKHLAKVNLEVTDLDTQFHDG--------GFF---VPLHDFYLTPQTFEQKVHNVAFA-FQLMQDVGLAKPKARP 421 (526)
Q Consensus 354 f~~FVNkHL~KlnL~VtDLetqFaDG--------gyF---IpL~~f~LtP~~~~qKLhNVslA-LELLqd~GL~k~~Isp 421 (526)
+.+|+|. |. +...+.++..||+|| .|| |-||.|-- -.+...|+.|-+.= ...++..|+...+-..
T Consensus 1 l~~WL~~-l~-ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~-~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i 77 (158)
T PF06294_consen 1 LLKWLQS-LD-LSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSN-GNSVAQKLNNWETLNEKVLKKLGIKLDKEDI 77 (158)
T ss_dssp HHHHHHH-S---S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT----HHHH
T ss_pred ChHHHhc-CC-CCCCCCchHHHcccccHHHHHHHHHCCCCccccccCC-CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4789998 22 445678899999999 333 34566633 35788999999887 8889999998888777
Q ss_pred hhhhcccchhhhh
Q psy2679 422 EDEFAKHARLSRK 434 (526)
Q Consensus 422 eDIvagdaKLtlk 434 (526)
+++.++..-+.-.
T Consensus 78 ~~i~~~~~Gaae~ 90 (158)
T PF06294_consen 78 EGIINCKPGAAES 90 (158)
T ss_dssp HHHHTT-TTTTHH
T ss_pred HHHHhCCCCHHHH
Confidence 8888887765533
No 25
>KOG0518|consensus
Probab=62.12 E-value=4.1 Score=48.61 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhcccCcccccccccccccceeeeccc----------cccCCCChhhhHhcHHHHHHHHHHcCCCCCCCCC
Q psy2679 352 KSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHD----------FYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARP 421 (526)
Q Consensus 352 kTf~~FVNkHL~KlnL~VtDLetqFaDGgyFIpL~~----------f~LtP~~~~qKLhNVslALELLqd~GL~k~~Isp 421 (526)
+.+|.|+--|..+.|.-..+|..+++||..|+.+-. +...|. .|+++||+.|+......+....+|..
T Consensus 29 ~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~~~~~skv~~~~p~--~q~~~~v~~a~~~ft~d~r~~~nigs 106 (1113)
T KOG0518|consen 29 LDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLSAVDTSKVKKKGPG--IQGLHNVREALNKFTVDNRKETNIGS 106 (1113)
T ss_pred CCceEEEEEccccCcceeEEEEecCccccccceeeEEeeccccceeEEecCC--ccCcchhhhhhhhhhhccceeeccCC
Confidence 455667777888999999999999999977775311 122343 69999999999999998899999999
Q ss_pred hhhhcccchhhhhH
Q psy2679 422 EDEFAKHARLSRKI 435 (526)
Q Consensus 422 eDIvagdaKLtlki 435 (526)
.+|++++.|+..+.
T Consensus 107 ~hivd~v~~~~g~~ 120 (1113)
T KOG0518|consen 107 AHIVDHVVKLIGSL 120 (1113)
T ss_pred cccccccccccccc
Confidence 99999999888765
No 26
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=57.85 E-value=3.1 Score=46.39 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcccCccccccccccccc--------ceeeec----cccccCCC-----ChhhhHhcHHHHHHHHHHcCC
Q psy2679 352 KSLITFVNKHLAKVNLEVTDLDTQFHDG--------GFFVPL----HDFYLTPQ-----TFEQKVHNVAFAFQLMQDVGL 414 (526)
Q Consensus 352 kTf~~FVNkHL~KlnL~VtDLetqFaDG--------gyFIpL----~~f~LtP~-----~~~qKLhNVslALELLqd~GL 414 (526)
+.|+=|.|+|- +..+|+|+..|.+|| ..++|+ ..-...|. ++..+++|-+.|.+|=...|+
T Consensus 382 r~~Tf~l~~~~--vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~nyavdlG~~~gf 459 (612)
T COG5069 382 RVFTFWLNSLD--VSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENYAVDLGITEGF 459 (612)
T ss_pred HHHHHHHHHhc--CChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccchhhhhhhhcCe
Confidence 56788888875 678999999999999 333453 12233453 466779999999999999999
Q ss_pred CCCCCCChhhhcccchhhhhH
Q psy2679 415 AKPKARPEDEFAKHARLSRKI 435 (526)
Q Consensus 415 ~k~~IspeDIvagdaKLtlki 435 (526)
....|.--|+.++.- +++..
T Consensus 460 ~~v~ik~le~~~~~r-~k~tl 479 (612)
T COG5069 460 SLVGIKGLEILDGIR-LKLTL 479 (612)
T ss_pred eeeeechhhhhhhhH-HHHHH
Confidence 999999999988764 55443
No 27
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=57.73 E-value=23 Score=33.53 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=38.1
Q ss_pred HHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCcccccceecCh-HHHHH-HHHHHHHHHHHHcCCC
Q psy2679 96 LIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSE-EGQKQ-KLAIVLEAVNKALGLP 166 (526)
Q Consensus 96 li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~-~~qkq-kl~~vl~~v~~~l~~~ 166 (526)
|..|+|+ -+-.+.+++++.|+-||..++.++.+.--..++.-..+.+. ..+|. +-..+=+.+=+.++++
T Consensus 1 l~~WL~~--l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~ 71 (158)
T PF06294_consen 1 LLKWLQS--LDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIK 71 (158)
T ss_dssp HHHHHHH--S--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT--
T ss_pred ChHHHhc--CCCCCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 5789999 55667899999999999999999999987777777766654 33333 3333224444445543
No 28
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=54.89 E-value=6.6 Score=35.27 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhh-hccCcceEEeCCCCcc
Q psy2679 463 ILNCLWVLIVAVAF-MNSTAPVVRIPQKWML 492 (526)
Q Consensus 463 a~~vl~~l~~~liw-wYrk~PVf~LP~gWf~ 492 (526)
+.|+..++..+++| |||..|--.+-++|=.
T Consensus 7 lywvggglvliliwlwfrnrpaaqvasnweg 37 (117)
T PF09301_consen 7 LYWVGGGLVLILIWLWFRNRPAAQVASNWEG 37 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-S-SS-TT--
T ss_pred EeEecCchhhHHHHHHHccChHHHHhhcCCC
Confidence 45677888888877 8999999988999985
No 29
>KOG4112|consensus
Probab=48.08 E-value=11 Score=34.11 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=23.8
Q ss_pred cchhhhHHH--HHHHHHHHHHHhh-hccCcceEEeC
Q psy2679 455 KIKTMITSI--LNCLWVLIVAVAF-MNSTAPVVRIP 487 (526)
Q Consensus 455 kfd~~it~a--~~vl~~l~~~liw-wYrk~PVf~LP 487 (526)
.|++.+.++ -++++++++++.| |||+.|+-|.+
T Consensus 48 qls~tvy~vg~~~v~t~li~LPpwP~y~rn~LkW~~ 83 (101)
T KOG4112|consen 48 QLSVTVYIVGAGFVFTLLITLPPWPWYRRNPLKWAQ 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhcCcccccC
Confidence 444554444 3677888888877 88899988876
No 30
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=35.77 E-value=21 Score=41.21 Aligned_cols=73 Identities=15% Similarity=0.355 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHHHHH----hhcccCcccccc--ccccc-------cc----------ceeeeccccccCCCChhhh
Q psy2679 342 HHPDKLQVVKKSLITFVNK----HLAKVNLEVTDL--DTQFH-------DG----------GFFVPLHDFYLTPQTFEQK 398 (526)
Q Consensus 342 ~~PeKl~vVKkTf~~FVNk----HL~KlnL~VtDL--etqFa-------DG----------gyFIpL~~f~LtP~~~~qK 398 (526)
.+|+.-+..|-||..++-. ||+++|++...| -.+|. .| +||.|=+.|..+|. +..+
T Consensus 185 ~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~-p~~~ 263 (697)
T COG1523 185 LHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPE-PATR 263 (697)
T ss_pred CCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCC-cchH
Confidence 3677777788888888776 999999763332 12222 23 88999899999998 8888
Q ss_pred HhcHHHHHHHHHHcCCC
Q psy2679 399 VHNVAFAFQLMQDVGLA 415 (526)
Q Consensus 399 LhNVslALELLqd~GL~ 415 (526)
+.-.....+.|+++||.
T Consensus 264 i~EfK~mV~~lHkaGI~ 280 (697)
T COG1523 264 IKEFKDMVKALHKAGIE 280 (697)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 98999999999999985
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=32.77 E-value=1.3e+02 Score=29.68 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=78.2
Q ss_pred CccHHHHHHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHHHHHHHHcCC
Q psy2679 86 DPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGL 165 (526)
Q Consensus 86 dpk~~el~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl~~v~~~l~~ 165 (526)
-|---++++..-.||-..|-.+=-.=-||-+-|-||.+|-+.+-+..+-.+...|--+- =-|.+++-..+.+. +.+++
T Consensus 8 ~~~~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~yKeSkmp-FVQmenIs~Fin~~-~k~~v 85 (178)
T COG5199 8 CPGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIKYKESKMP-FVQMENISSFINGL-KKLRV 85 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccceecccCCc-eeeHHHHHHHHHHH-HHhCC
Confidence 45556788899999999998876667899999999999999988776665555443222 23566555444443 45567
Q ss_pred CCCCCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhc
Q psy2679 166 PRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHF 229 (526)
Q Consensus 166 ~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f 229 (526)
|+.. |-|++ +-.-.||+--++.-|-+|.|+-
T Consensus 86 pe~e---------------------------lFQT~------DLFE~kd~~qV~~~l~slSRya 116 (178)
T COG5199 86 PEYE---------------------------LFQTN------DLFEAKDLRQVVICLYSLSRYA 116 (178)
T ss_pred CHHH---------------------------HHHhh------hHHhhcCHHHHHHHHHHHHHHH
Confidence 7643 44554 6667899999999999998875
No 32
>KOG0670|consensus
Probab=32.17 E-value=14 Score=42.25 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHHHHHHhhHhhhhcccchhhhHHHHHHH-HHHHHHHhhhcc
Q psy2679 401 NVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCL-WVLIVAVAFMNS 479 (526)
Q Consensus 401 NVslALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eELEklnks~sa~kskfd~~it~a~~vl-~~l~~~liwwYr 479 (526)
.+=+||++|+..|+.-.-|.|.-|..-..|.++++ +. ++.|.++. +-++.+++.-||
T Consensus 544 QLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKL----------CD------------fGSA~~~~eneitPYLVSRFY 601 (752)
T KOG0670|consen 544 QLFLALKLLKKCGVLHADIKPDNILVNESKNILKL----------CD------------FGSASFASENEITPYLVSRFY 601 (752)
T ss_pred HHHHHHHHHHhcCeeecccCccceEeccCcceeee----------cc------------CccccccccccccHHHHHHhc
Confidence 45689999999999999999999999999998876 21 12222222 445566666667
Q ss_pred CcceEEeCCCCccccccccccCCceeechhhhhh
Q psy2679 480 TAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIK 513 (526)
Q Consensus 480 k~PVf~LP~gWf~PLEwlLSfPGSVSItvWl~Vc 513 (526)
+.| |-++++|=.-+|-.|.+.|
T Consensus 602 RaP------------EIiLG~~yd~~iD~WSvgc 623 (752)
T KOG0670|consen 602 RAP------------EIILGLPYDYPIDTWSVGC 623 (752)
T ss_pred cCc------------ceeecCcccCCccceeece
Confidence 777 4445566566677788888
No 33
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=31.81 E-value=71 Score=33.59 Aligned_cols=51 Identities=12% Similarity=0.269 Sum_probs=45.3
Q ss_pred ChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHHHHH
Q psy2679 394 TFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEK 444 (526)
Q Consensus 394 ~~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eELEk 444 (526)
.++.+++++..|++.-+..||+++.++..+.++.+.-..+|-+.|.+++++
T Consensus 192 ~~~~~I~rL~~AL~IA~aagI~kP~~~~~~~l~~d~~~~lG~~aL~akl~~ 242 (325)
T PRK15471 192 QKDLRIKQIQEALQYANQANITKPQIQQTQDVTQDTLFLLGSEALESMIKH 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCcchHHHhhHHHHHHHHHh
Confidence 356789999999999999999999888777778888999999999999965
No 34
>TIGR03474 incFII_RepA incFII family plasmid replication initiator RepA. Members of this protein are the plasmid replication initiator RepA of incFII (plasmid incompatibility group F-II) plasmids. R1 and R100 are plasmids in this group. Immediately upstream of repA is found tap, a leader peptide of about 24 amino acids, often not assigned as a gene in annotated plasmid sequences. Note that other, non-homologous plasmid replication proteins share the gene symbol (repA) and similar names (plasmid replication protein RepA).
Probab=29.46 E-value=2.4e+02 Score=29.58 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeEEEEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCC-ccchhhcccccc
Q psy2679 217 PILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNT-KWSVESIHSKNL 295 (526)
Q Consensus 217 ail~LLVaLa~~f~~~~~lp~nv~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 295 (526)
|+=-++.||+.||.+-- -++..-+|-+....||..-|.. +=|+.-
T Consensus 63 Ai~A~lqAMlyh~Ni~S----------------------------~~V~aSIeqLadeCGLST~S~aGnkSITR------ 108 (275)
T TIGR03474 63 AIDALLQGMCFHYDPLA----------------------------NRVQRSITNLAIECGLATESKSGNLSITR------ 108 (275)
T ss_pred HHHHHHHHHHHHcCchh----------------------------hHHHHHHHHHHHHhCCcccCcCCCchhHH------
Confidence 55568899999997311 1345567888888999887654 222211
Q ss_pred hhhhhhhhhhccCCcceeeEEEeeecccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCccccccccc
Q psy2679 296 VPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQ 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~g~l~~~~~~e~it~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetq 375 (526)
.--++--+-.=|-++.+++-..++++|-. ..-.=...|=.||+..+.|+...|+.=+.|.|+.|.+-|++--.|+..
T Consensus 109 --ASR~I~fLEpmGfI~cek~wD~~~g~yiP-k~I~lTplFF~l~gis~~~l~~A~~qql~W~Nk~l~kkGl~pltl~Ea 185 (275)
T TIGR03474 109 --ATRALTFLSELGLITYQTEYDPQIGCNIP-TDITFTPALFSALDVSEVAVAAARRSRVEWENKQRKKQGLDTLEMDEL 185 (275)
T ss_pred --HHHHHHHHHhcCceeeeeecchhhhccCC-ceeEecHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 11122223445888888887777766542 222334567889999999999999999999999999999998888888
Q ss_pred ccccceee
Q psy2679 376 FHDGGFFV 383 (526)
Q Consensus 376 FaDGgyFI 383 (526)
.+..-.|+
T Consensus 186 i~~aw~~~ 193 (275)
T TIGR03474 186 IAKAWRFV 193 (275)
T ss_pred HHHHHHHH
Confidence 87774444
No 35
>PRK13750 replication protein; Provisional
Probab=28.52 E-value=2.8e+02 Score=29.30 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeEEEEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCC-ccchhhcccccc
Q psy2679 217 PILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNT-KWSVESIHSKNL 295 (526)
Q Consensus 217 ail~LLVaLa~~f~~~~~lp~nv~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 295 (526)
|+=-++.||+.||.+-- -++..-+|-+....||..-|.. +=|+.-
T Consensus 71 Ai~A~lqaMlyh~Ni~S----------------------------~~V~aSIeqLadeCGLST~S~aGnkSITR------ 116 (285)
T PRK13750 71 AIDALLQGLCFHYDPLA----------------------------NRVQCSITTLAIECGLATESAAGKLSITR------ 116 (285)
T ss_pred HHHHHHHHHHHHcCcch----------------------------hHHHHHHHHHHHHhCCcccCcCCCcchHH------
Confidence 55568899999997311 1345567888888999887654 222211
Q ss_pred hhhhhhhhhhccCCcceeeEEEeeecccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCccccccccc
Q psy2679 296 VPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQ 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~g~l~~~~~~e~it~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetq 375 (526)
.--++--+-.=|-++.+++...++++|-- ..-.=...|=.||+..+.|+...|+.=+.|.|+.|.+-|++--.|+..
T Consensus 117 --ASR~I~fLEpmGfI~cek~wD~~~g~yiP-k~I~lTplFF~l~gIs~~kl~~A~~qql~W~Nk~l~kkGl~pltl~Ea 193 (285)
T PRK13750 117 --ATRALTFLAELGLITYQTEYDPLIGCYIP-TDITFTPALFAALDVSEVAVAAARRSRVEWENRQRKKQGLDTLGMDEL 193 (285)
T ss_pred --HHHHHHHHHhcCceeeeeeccchhhcccC-cceeecHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 11122223445888888887777766642 222334568889999999999999999999999999999998888888
Q ss_pred ccccceee
Q psy2679 376 FHDGGFFV 383 (526)
Q Consensus 376 FaDGgyFI 383 (526)
.+..-.|+
T Consensus 194 i~~aw~~~ 201 (285)
T PRK13750 194 IAKAWRFV 201 (285)
T ss_pred HHHHHHHH
Confidence 77774444
No 36
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=28.31 E-value=96 Score=32.05 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=47.6
Q ss_pred ChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHHHHHHhhHhhh
Q psy2679 394 TFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAE 451 (526)
Q Consensus 394 ~~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eELEklnks~sa 451 (526)
+..|-+++|..|+..|++.|| +-.+|.|-|+.=+|.---|.|..+.|....+.+.+
T Consensus 81 Fy~qAl~av~~a~~~L~~~gi--p~~RP~DYfAEMvKSD~HM~KVr~kLl~~~~~ie~ 136 (271)
T PF05890_consen 81 FYKQALEAVKEARPRLKKLGI--PFKRPDDYFAEMVKSDEHMEKVRQKLLKEQKRIEA 136 (271)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CccCCCcchHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999997 55689999999999999999988888777666654
No 37
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=25.92 E-value=96 Score=30.03 Aligned_cols=75 Identities=24% Similarity=0.278 Sum_probs=48.2
Q ss_pred hcccCcccccccccccccceeeeccccccCCCChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhHHHHHHH
Q psy2679 362 LAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQ 441 (526)
Q Consensus 362 L~KlnL~VtDLetqFaDGgyFIpL~~f~LtP~~~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlkiDKL~eE 441 (526)
|+|-|++=.-+-.-++|- |=||.-..-.. . .-.+.|++.|+. + -=|||.++ |+.+++.+.+-
T Consensus 40 lakkG~~pSqIG~~LRD~-~gip~Vk~vtG-----~------ki~~iLk~~gl~-p-~iPEDL~~----L~~ri~~L~~H 101 (151)
T PRK08561 40 LAKQGYSPSMIGIILRDQ-YGIPDVKLITG-----K------KITEILEENGLA-P-EIPEDLRN----LIKKAVNLRKH 101 (151)
T ss_pred HHHCCCCHHHhhhhHhhc-cCCCceeeecc-----c------hHHHHHHHcCCC-C-CCcHHHHH----HHHHHHHHHHH
Confidence 566676655555555554 33554333221 1 236788888872 3 34899986 78889999999
Q ss_pred HHHHhhHhhhhcc
Q psy2679 442 LEKECKLNAESCN 454 (526)
Q Consensus 442 LEklnks~sa~ks 454 (526)
|+...+...+.+.
T Consensus 102 L~~nkKD~~skRg 114 (151)
T PRK08561 102 LEENPKDLHNKRG 114 (151)
T ss_pred HHhCCCcchhHHH
Confidence 9998887655443
No 38
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=23.11 E-value=1.4e+02 Score=32.00 Aligned_cols=51 Identities=14% Similarity=0.352 Sum_probs=42.6
Q ss_pred hhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchh--hhhHHHHHHHHHHH
Q psy2679 395 FEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARL--SRKISALQAQLEKE 445 (526)
Q Consensus 395 ~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKL--tlkiDKL~eELEkl 445 (526)
++.+++.+..|++.-+..||+++..+..+.+..+.-. .+|-+.|.++++..
T Consensus 233 ~~~~i~rl~~AL~IA~aagI~kp~~~~~~~~~d~~~f~i~lG~~aL~akl~~~ 285 (377)
T PRK10381 233 LDANIQRLNYSLSIANAAGIKKPVYSNGQAVKDDPDFSIALGADGLERKLEIE 285 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCccchHhhcHHHHHHHHHHH
Confidence 5567899999999999999999999877888554444 89999999999833
No 39
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=22.14 E-value=1.2e+02 Score=25.06 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=29.5
Q ss_pred cccceeee---ccccccCCCChhhhHhcHHHHHHHHHHc
Q psy2679 377 HDGGFFVP---LHDFYLTPQTFEQKVHNVAFAFQLMQDV 412 (526)
Q Consensus 377 aDGgyFIp---L~~f~LtP~~~~qKLhNVslALELLqd~ 412 (526)
.||+|++. |..++..-.+.++-+.|..-|+++.-+.
T Consensus 12 ~dg~y~~~~Pdlpgc~s~G~T~eea~~n~~eai~l~~e~ 50 (73)
T COG1598 12 EDGGYVASVPDLPGCHSQGETLEEALQNAKEAIELHLEA 50 (73)
T ss_pred CCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 89999885 4556777789999999999999987763
No 40
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.06 E-value=1.9e+02 Score=25.26 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhcccc--ccccchhh--hhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHHHHHHHHcCC
Q psy2679 93 IFVLIEWINDELADQR--IIVKDLEE--DLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGL 165 (526)
Q Consensus 93 ~~~li~WiN~~L~~~r--iiVkdl~e--DLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl~~v~~~l~~ 165 (526)
.+.+..|.++++...- +++.++-+ |-.+-.-.++=-+++-|..+ +++....+..+++++..|+.+++.|+-
T Consensus 2 ~~~~~~w~~~~l~~~~~~l~~~~~~~~~~~~~~~~F~~~R~~~~g~~l--e~~~~~~~~~~~~~~~~l~~l~~~L~~ 76 (124)
T cd03202 2 ARFIERWSNTTLVPGLFPLIVPDIHDLLDPPDQAYFRQSREKRFGRSL--EEVAAGREAALANFRAALEPLRATLKG 76 (124)
T ss_pred cHHHHHHHHHHHhhhhhhhhHhhHHhhCChhhHHHHHHHHHHHhCCCH--HHHCcchHHHHHHHHHHHHHHHHHHcC
Confidence 4567799999988765 56666533 22334444444456656433 667777789999999999999999954
No 41
>PF08743 Nse4_C: Nse4 C-terminal; InterPro: IPR014854 Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1 [].
Probab=21.48 E-value=66 Score=27.76 Aligned_cols=31 Identities=29% Similarity=0.665 Sum_probs=24.3
Q ss_pred eeccccccCCCChhhhHhcHHHHHHHHHHcCC
Q psy2679 383 VPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGL 414 (526)
Q Consensus 383 IpL~~f~LtP~~~~qKLhNVslALELLqd~GL 414 (526)
|++.+|.+.|.++.|.++|+ +.+.+|-..|.
T Consensus 3 i~~~~fvinP~SFsqTVENi-F~lSFLVkdG~ 33 (93)
T PF08743_consen 3 IDLFEFVINPKSFSQTVENI-FYLSFLVKDGR 33 (93)
T ss_pred cchhhheeCcchHHHHHHHH-HHHHHHHhcCe
Confidence 56788999999999999999 55566655444
No 42
>KOG3312|consensus
Probab=21.13 E-value=1.4e+02 Score=29.51 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHhhHhhhhcccchhhhHHHHHHHHHHHHHHhhhccCcceEEeCCCCccccccccccC-----C---
Q psy2679 431 LSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAP-----W--- 502 (526)
Q Consensus 431 LtlkiDKL~eELEklnks~sa~kskfd~~it~a~~vl~~l~~~liwwYrk~PVf~LP~gWf~PLEwlLSfP-----G--- 502 (526)
.+++++.-.+.|+..|+.++ .++++..+-+++ +++++.-.+...|--.-|--|| |.|+.|+-.+- |
T Consensus 65 ~kkKieR~Ee~LK~~nRDlS--l~kmKsmfaigl-~ftal~~~fNSiFeGrVVAkLP---F~Pis~iqglSHRnL~GdD~ 138 (186)
T KOG3312|consen 65 KKKKIERVEEKLKNNNRDLS--LFKMKSMFAIGL-AFTALLGMFNSIFEGRVVAKLP---FTPISIIQGLSHRNLKGDDM 138 (186)
T ss_pred HHHHHHHHHHHHhccccchH--HHHHHHHHHHHH-HHHHHHHHHHhhhcceeEEecC---CcchHHHhcccccCCCCCCc
Confidence 45677877888876666554 444444444332 2233333333445556677888 78999987776 2
Q ss_pred -ceeechhhhhh
Q psy2679 503 -SIGFTSWMTIK 513 (526)
Q Consensus 503 -SVSItvWl~Vc 513 (526)
-.|..+-...|
T Consensus 139 TDCSfiFLYiLC 150 (186)
T KOG3312|consen 139 TDCSFIFLYILC 150 (186)
T ss_pred cchHHHHHHHHH
Confidence 34455555555
No 43
>KOG0532|consensus
Probab=21.12 E-value=1.1e+02 Score=35.54 Aligned_cols=78 Identities=28% Similarity=0.415 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHcc---Ccccccceec---ChHHHHHHHHHHHHHHH
Q psy2679 87 PKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQ---EKLDVPEVTQ---SEEGQKQKLAIVLEAVN 160 (526)
Q Consensus 87 pk~~el~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~---~kl~v~ev~~---s~~~qkqkl~~vl~~v~ 160 (526)
+.=+||+..|-.=|-..|+- -.=-||-..|-||+||-||..++-- .-+.||--+- |-..-|++++-.||+-
T Consensus 572 ~eE~eL~~QLRk~iEtRLk~--sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaC- 648 (722)
T KOG0532|consen 572 REEKELMLQLRKLIETRLKV--SLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEAC- 648 (722)
T ss_pred hHHHHHHHHHHHHHHHHhcc--cCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHH-
Confidence 33457777776666555542 2345899999999999999999854 3334443322 3345589999999987
Q ss_pred HHcCCCC
Q psy2679 161 KALGLPR 167 (526)
Q Consensus 161 ~~l~~~~ 167 (526)
|.+|+|+
T Consensus 649 RkiGVpE 655 (722)
T KOG0532|consen 649 RKIGVPE 655 (722)
T ss_pred HHcCCCh
Confidence 4567766
No 44
>TIGR02904 spore_ysxE spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.
Probab=21.02 E-value=3.6e+02 Score=26.96 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHHHhhcccCcccccccccccccceeeeccc--cccCC-------CChhhhHhcHHHHHHHHHHcCCCCCCCCChhh
Q psy2679 354 LITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHD--FYLTP-------QTFEQKVHNVAFAFQLMQDVGLAKPKARPEDE 424 (526)
Q Consensus 354 f~~FVNkHL~KlnL~VtDLetqFaDGgyFIpL~~--f~LtP-------~~~~qKLhNVslALELLqd~GL~k~~IspeDI 424 (526)
+.... .||.+.|....+---.=.||.+++.... |.+.| ..+.+.+.++..+|-.|+..+..-......++
T Consensus 47 ~~~~~-~~L~~~G~~~~~~~~~t~~G~~~~~~~~~~~~L~~wi~G~~~~~~~~~~~~~~~~LA~lH~~~~~~~~~~~~~~ 125 (309)
T TIGR02904 47 FVSQI-QVLSEKGFSRIVPVYPTKDGSYYLFHGHFLYYLMPWLDIERNEERNYQHESMFQELALLHRKTVKTERVTEEEL 125 (309)
T ss_pred HHHHH-HHHHHcCCCcCCceeecCCCCeeeEECCEEEEEeCCcccccccCCHHHHHHHHHHHHHHHHhhhCCCcccHhHH
Confidence 33333 6999999864333322367766554433 34442 22335578888899999988775444333333
Q ss_pred hcccchhhhhHHHHHHHHHHHhh
Q psy2679 425 FAKHARLSRKISALQAQLEKECK 447 (526)
Q Consensus 425 vagdaKLtlkiDKL~eELEklnk 447 (526)
-....+..+...+..+++....+
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~~ 148 (309)
T TIGR02904 126 KKHYERTLSRWENIPEGLEEFIV 148 (309)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333444444444544443
No 45
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.82 E-value=31 Score=36.41 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=18.9
Q ss_pred cccccccCCceeechhhhhh
Q psy2679 494 LSYFGYAPWSIGFTSWMTIK 513 (526)
Q Consensus 494 LEwlLSfPGSVSItvWl~Vc 513 (526)
+||+..+||+||.+++|-|-
T Consensus 109 lE~l~gIPGTVGGAv~mNaG 128 (334)
T PRK00046 109 LENLALIPGTVGAAPIQNIG 128 (334)
T ss_pred hHHhcCCCcchhHHHHhcCC
Confidence 89999999999999999886
No 46
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=20.58 E-value=1.9e+02 Score=32.44 Aligned_cols=83 Identities=29% Similarity=0.415 Sum_probs=51.7
Q ss_pred ccccchhhhhhhhHHHHHHHHHHccC--cccccceecChHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccchhH
Q psy2679 109 IIVKDLEEDLYDGQILQKLLEKLNQE--KLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPI 186 (526)
Q Consensus 109 iiVkdl~eDLyDG~vL~~Llekl~~~--kl~v~ev~~s~~~qkqkl~~vl~~v~~~l~~~~~~~~~~~~~~i~~k~~~~~ 186 (526)
-.+.+||+.|.||.+++.++|...+. .++|..-..=.+.=...+...+..+.+.++-+.
T Consensus 214 ~ll~~le~~ll~g~iF~~~~eq~fd~~~~~~v~~n~~l~eef~~~l~~~~~~~e~~l~~~~------------------- 274 (567)
T PF14745_consen 214 KLLADLEGQLLDGNIFQRCLEQLFDDKGQVSVSKNKRLSEEFAAYLKELLEELEAKLGEPK------------------- 274 (567)
T ss_pred HHHHHHHHHhhcchHHHHHHHHhcccccceeccccHHHHHHHHHHHHHHHHHHHhhcCCcc-------------------
Confidence 35778999999999999999999873 222222111113334455555555555553222
Q ss_pred HHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhccC
Q psy2679 187 LHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRA 231 (526)
Q Consensus 187 ~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f~~ 231 (526)
+.-..++++.++.|.|-..++|++
T Consensus 275 ---------------------e~~~r~~~igl~~L~vl~~~Lf~~ 298 (567)
T PF14745_consen 275 ---------------------ELDDRKDFIGLCGLYVLHYHLFPS 298 (567)
T ss_pred ---------------------ccccHHHHHHHHHHHHHHHHHccc
Confidence 234455777777777777777775
No 47
>KOG2305|consensus
Probab=20.27 E-value=59 Score=34.08 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=47.6
Q ss_pred cccccccccccccceeeeccccccCCCChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcc
Q psy2679 367 LEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAK 427 (526)
Q Consensus 367 L~VtDLetqFaDGgyFIpL~~f~LtP~~~~qKLhNVslALELLqd~GL~k~~IspeDIvag 427 (526)
+.-.|-..-|+.|||-|-||+ ..+..-.--++|+.+-+..|++.|+.+.++++++-++.
T Consensus 13 l~g~~WAmlFAs~GyqVqlYD--I~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~ 71 (313)
T KOG2305|consen 13 LVGSSWAMLFASSGYQVQLYD--ILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLAL 71 (313)
T ss_pred cccchHHHHHhccCceEEEee--ccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHH
Confidence 334556677999999998755 45555666799999999999999999999999987764
No 48
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=20.22 E-value=54 Score=28.98 Aligned_cols=30 Identities=27% Similarity=0.754 Sum_probs=23.6
Q ss_pred HHHhhcccC---cccccccccccccceeeecccc
Q psy2679 358 VNKHLAKVN---LEVTDLDTQFHDGGFFVPLHDF 388 (526)
Q Consensus 358 VNkHL~Kln---L~VtDLetqFaDGgyFIpL~~f 388 (526)
+.++|.|+| ..+.+++.+ -||+.|||+..-
T Consensus 71 i~~ql~KlG~T~F~~~~i~i~-~~~~lFlP~s~L 103 (122)
T PF12392_consen 71 IRKQLSKLGNTPFELENIEID-LDEGLFLPISEL 103 (122)
T ss_pred HHHHHHhhCCCcEEEEEEEEE-cCCCEEEEHHHH
Confidence 467888888 668899988 488899997654
Done!