RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2679
(526 letters)
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 101 bits (252), Expect = 1e-25
Identities = 74/105 (70%), Positives = 83/105 (79%), Gaps = 11/105 (10%)
Query: 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG---------- 379
R ERDAFDTLFDH PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF DG
Sbjct: 3 RHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 62
Query: 380 -GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
G+FVPLH F+LTP +FEQKV NV+FAF+LMQD GL KPK RPED
Sbjct: 63 EGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPED 107
Score = 47.5 bits (113), Expect = 6e-07
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 88 KLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEG 147
KL + LI ++N L + V +LE DG L L+ L + + + +
Sbjct: 19 KLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDS 78
Query: 148 QKQKLAIVLEAVNKALGLPRWSNTKW---SVESIHSKNLVPILHLLVSLAL 195
+QK + V+ A L + + E I + +L L +L +L
Sbjct: 79 FEQK----VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFT 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 1e-15
Identities = 83/505 (16%), Positives = 169/505 (33%), Gaps = 140/505 (27%)
Query: 25 FWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYALEENEE--RSMLEPR 82
FW + L + V E+ Q+ + ID + + + + + R +L+ +
Sbjct: 185 FW--L-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 83 AY-------DDPKLQELI--F-----VLIEWINDELADQ-------RIIVKDLEEDLYDG 121
Y + + + F +L+ ++ D I + L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 122 QILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSK 181
++ LL+ L+ D+P + ++L+I+ E++ GL W N W + ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRD--GLATWDN--W--KHVNCD 353
Query: 182 NLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSV 241
L I+ + S+ L P + + F P + +
Sbjct: 354 KLTTII----------------ESSLN-----VLEPAEYR-----KMFDRLSVFPPSAHI 387
Query: 242 GVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHL 301
+++ L +V +S+ +V + +L + + S SI S ++L
Sbjct: 388 PTILLSLIWFDVIKSDVMV-----VVNKLHKYSL-VEKQPKE--STISIPS------IYL 433
Query: 302 LVSLKKEGSLS-HRTIKE--EITSTYD--DLGMRCERDAFDTLFDHHPDKLQVVKKSLIT 356
+ +K E + HR+I + I T+D DL F + H I
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSH------------IG 478
Query: 357 FVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTF-EQKVHNVAFAFQ-------L 408
HL N+E + T F F+ DF F EQK+ + + A+
Sbjct: 479 H---HLK--NIEHPERMTLFRM--VFL---DF-----RFLEQKIRHDSTAWNASGSILNT 523
Query: 409 MQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLW 468
+Q + KP + R ++A+ L K +++ +
Sbjct: 524 LQQLKFYKPYICD-----NDPKYERLVNAILDFLPK--------IE------ENLICSKY 564
Query: 469 VLIVAVAFMNSTAPVV----RIPQK 489
++ +A M + + Q+
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 47.5 bits (112), Expect = 9e-06
Identities = 72/441 (16%), Positives = 127/441 (28%), Gaps = 133/441 (30%)
Query: 110 IVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVL-----EAVNKALG 164
V + D D + L++E++D +++ +L L E V K +
Sbjct: 29 FVDNF--DCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 165 LPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVS 224
N K+ + I ++ P + + + + ++ + +K V L +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIE-----QRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 225 LVRHFRAPVRL-PENVSVGVVVVQLDVPEVTQSEEGQ----KQKLAI-VLEAVNKALGLP 278
L + L P V++ +G K +A+ V + +
Sbjct: 140 LRQALL---ELRPAK---NVLI------------DGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 279 R---WSNTKWSVESIHS--KNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCER 333
W N K + S + + L +L+ + S IK I S +
Sbjct: 182 FKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS---------IQ 231
Query: 334 DAFDTLFDHHPDKLQVVKKSLITFVN----KHLAKVNLE----VTDLDTQFHDGGFFVPL 385
L P + L+ +N K NL +T Q +
Sbjct: 232 AELRRLLKSKP-----YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ---------V 277
Query: 386 HDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKE 445
DF T + + + + L K+ L + L ++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSL----------LLKY--LDCRPQDLPREV--- 322
Query: 446 CKLN-------AES---------------CNKIKTMITSILNCL---------WVLIVAV 474
N AES C+K+ T+I S LN L L V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-- 380
Query: 475 AFMNSTAPVVRIPQK-----W 490
F S IP W
Sbjct: 381 -FPPS----AHIPTILLSLIW 396
Score = 47.2 bits (111), Expect = 1e-05
Identities = 63/439 (14%), Positives = 134/439 (30%), Gaps = 107/439 (24%)
Query: 72 ENEERSMLEPRAYDD----PKLQELIFVLIEWI---NDELADQRIIVKDLEEDLYDGQIL 124
++ +S+L D L W E Q+ + + L + Y
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRIN-YKF--- 93
Query: 125 QKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPR----WSNTKWSVESIHS 180
L+ + E+ +T+ Q+ +L + K + R + +E +
Sbjct: 94 --LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPA 150
Query: 181 KNLVPILH--------LLVSLAL---GLPRWSNTK--W-SVESIHSKNLV--PILHLLVS 224
KN++ + + + + K W ++++ +S V + LL
Sbjct: 151 KNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 225 LVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTK 284
+ ++ + N+ + + +Q + + L +VL V +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCL-LVLLNV--------QNAKA 258
Query: 285 WSVESIHSKNLV------PILHLLVSLKKEGSLSHR----TIKE--EITSTYDDLGMRCE 332
W+ ++ K L+ L + SL H T E + Y L R +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQ 316
Query: 333 ---RDAFDTLFDHHPDKLQVVKKSLITFVN-----KH-----LAKV------NLEVTDLD 373
R+ T +P +L ++ +S+ + KH L + LE +
Sbjct: 317 DLPREVLTT----NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 374 TQFHDGGFFVPLHDFYLTPQTF-----EQKVHNVAFAFQLMQDVGLAKP----------- 417
F F P ++ + +V + L +
Sbjct: 373 KMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 418 -----KARPEDEFAKHARL 431
K + E+E+A H +
Sbjct: 431 IYLELKVKLENEYALHRSI 449
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 5e-08
Identities = 58/347 (16%), Positives = 98/347 (28%), Gaps = 104/347 (29%)
Query: 206 SVE-SIHSKNLVP-ILHLLVSLVR-HFRAPVRLP--------ENVSVGVVVVQ-LD--VP 251
S+E + LVP + S ++ F + P E + +V + L
Sbjct: 15 SLEHVL----LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 252 EVTQSEEGQ-KQKLAIVLEAVNKA-LGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEG 309
V S+ GQ Q L + L L N IH+ L L +E
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLE----GN------DIHA--------LAAKLLQEN 112
Query: 310 SLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEV 369
+ KE I + + FD L V
Sbjct: 113 DTTLVKTKELIKNYIT--ARIMAKRPFDK---KSNSAL--------------FRAVGEGN 153
Query: 370 TDLDTQFHDGG------FFVPLHDFYLTPQTFEQKVHNVAFAFQLMQ------------- 410
L F GG +F L D Y T + + F+ + +
Sbjct: 154 AQLVAIF--GGQGNTDDYFEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVF 209
Query: 411 ----DVG--LAKPKARPEDEFAKHARLSRKISAL-Q-AQLEKECKLNAESCNKIKTMITS 462
++ L P P+ ++ +S + + Q A KL + ++++ +
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 463 ILNCLWVLIVAVA---------FMNSTAPVVRIPQKWMLPLSYFGYA 500
L+ AVA F S + + L + G
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-------LFFIGVR 309
Score = 48.1 bits (114), Expect = 7e-06
Identities = 65/357 (18%), Positives = 101/357 (28%), Gaps = 147/357 (41%)
Query: 1 MATLTRPKSPRPPVSAKK--DDKDESFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNP 58
M S +A+ + D F D G I ++ V NP
Sbjct: 1631 MGMDLYKTSK----AAQDVWNRADNHFKDTYGF-----SILDI--VIN----------NP 1669
Query: 59 TNPDL---APEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLE 115
N + + + EN Y +IF E I D I K++
Sbjct: 1670 VNLTIHFGGEKGKRIREN----------YS-----AMIF---ETIVDGKLKTEKIFKEIN 1711
Query: 116 EDL----YDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNT 171
E + + + L + TQ A+ + KA
Sbjct: 1712 EHSTSYTFRSE----------KGLLSATQFTQP--------ALT--LMEKAA-------- 1743
Query: 172 KWSVESIHSKNLVPIL-----H-L-----LVSLALGLPRWSNTKWSVESIHSKNLVPILH 220
E + SK L+P H L L SLA + S+ES
Sbjct: 1744 ---FEDLKSKGLIPADATFAGHSLGEYAALASLADVM--------SIES----------- 1781
Query: 221 LLVSLVRHFR------APVRLPEN--------VSVGVVVVQLDVPEVTQSEEGQKQKLAI 266
LV +V +R A R ++ G V + E ++
Sbjct: 1782 -LVEVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 267 VLEAVN--------------KALGLPRWSNTKWSV-ESIHSKNLVPILHLLVSLKKE 308
++E VN +AL +T +V I + + I+ L SL E
Sbjct: 1840 LVEIVNYNVENQQYVAAGDLRAL------DTVTNVLNFIKLQK-IDIIELQKSLSLE 1889
Score = 44.7 bits (105), Expect = 8e-05
Identities = 63/464 (13%), Positives = 123/464 (26%), Gaps = 159/464 (34%)
Query: 64 APEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQI 123
E +A ++ EP EL+ + +++ + + +D Q+
Sbjct: 44 PTEGFAADD-------EPTT-----PAELVGKFLGYVSSLVEPS-------KVGQFD-QV 83
Query: 124 LQKLLEKLNQEKL---DV----PEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWS-- 174
L L + L D+ ++ Q + K +++ A + + K S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 175 --VESIHSKN-------------------LV-------PILHLLVSLALG-LPRWSNTKW 205
++ N L ++ L+ + L T
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 206 SVESIHSKNL-----------VPILHLLVSLVRHFRAPVRLPENVSVGVVVVQL------ 248
E + ++ L P L+S P+ P + V+QL
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLS------IPISCP-----LIGVIQLAHYVVT 252
Query: 249 ------DVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLL 302
E+ +G ++ AV A +++ W ES ++ + +L
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-----TDS-W--ESFF-VSVRKAITVL 303
Query: 303 VSLKKEGSLSHRT-----IKEEITSTYDDLG------M----RCERDAFDTLFDHHPDKL 347
+ G + + I + M ++ + L
Sbjct: 304 FFI---GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 348 QVVKK---SLI----TFV-----------NKHLAKVNLEVTDLDTQ-----------FHD 378
K+ SL+ V N L K + LD Q F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLD-QSRIPFSERKLKFS- 417
Query: 379 GGF---FVPLHDFYLTP--QTFEQKVHNVAFAFQLMQDVGLAKP 417
F P H L P + + +F + P
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD---IQIP 458
Score = 38.5 bits (89), Expect = 0.007
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 31/139 (22%)
Query: 24 SFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPG----NPTNPDLAPEEYALEENEERSML 79
S + + R +Q + + G NP + + AL+ ER
Sbjct: 1778 SIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER--- 1832
Query: 80 EPRAYDDPKLQELIFVLIEWINDELADQRIIV----KDLEEDLYDGQILQKLLEKLNQEK 135
+ + L+E +N + +Q+ + + L+ + +L + +K
Sbjct: 1833 ---------VGKRTGWLVEIVNYNVENQQYVAAGDLRALDT-------VTNVLNFIKLQK 1876
Query: 136 LDVPE--VTQSEEGQKQKL 152
+D+ E + S E + L
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 48.3 bits (115), Expect = 4e-07
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 88 KLQELIFVLIEWINDELA--DQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSE 145
+ Q+ I+ W N LA + +++DL++D+ DG +L ++++ + EK++
Sbjct: 17 EDQKRIYTD--WANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIED------I 68
Query: 146 EGQKQKLAIVLEAVNKALGLPRWSNTKW---SVESIHSKNLVPILHLLVSLAL 195
G + + ++E ++ L S E I + NL IL L SL+
Sbjct: 69 NGCPKNRSQMIENIDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSR 121
Score = 32.1 bits (73), Expect = 0.15
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 356 TF---VNKHLAKVNLE--VTDLDTQFHDGGFFV---------PLHDFYLTPQTFEQKVHN 401
+ N +LAK + + DL DG + D P+ Q + N
Sbjct: 22 IYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIEN 81
Query: 402 VAFAFQLMQDVGLAKPKARPED 423
+ + G+ E+
Sbjct: 82 IDACLNFLAAKGINIQGLSAEE 103
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 49.9 bits (119), Expect = 6e-07
Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 19/155 (12%)
Query: 65 PEEYALEENEERSMLEPRAYDDP--KLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQ 122
Y +E+ E+ D K Q F W N L ++++EED +G
Sbjct: 4 HHHY-MEQEEDWD--RDLLLDPAWEKQQRKTFT--AWCNSHLRKAGTQIENIEEDFRNGL 58
Query: 123 ILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAI-VLEAVNKALGLPRWSNTKW---SVESI 178
L LLE ++ E+L P+ K K+ + VNKAL K E I
Sbjct: 59 KLMLLLEVISGERLPRPD--------KGKMRFHKIANVNKALDFIASKGVKLVSIGAEEI 110
Query: 179 HSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSK 213
NL L ++ ++ L + +
Sbjct: 111 VDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGL 145
Score = 36.5 bits (84), Expect = 0.014
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 356 TF---VNKHLAKVNLEVTDLDTQFHDGGFFVPLHDF--------YLTPQTFEQKVHNVAF 404
TF N HL K ++ +++ F +G + L + + K+ NV
Sbjct: 31 TFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNK 90
Query: 405 AFQLMQDVGLAKPKARPED 423
A + G+ E+
Sbjct: 91 ALDFIASKGVKLVSIGAEE 109
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 48.4 bits (115), Expect = 1e-06
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 69 ALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLL 128
A+ E+ + E + +Q+ F W N+ L + +L+ DL DG L LL
Sbjct: 2 AMAPVTEKDLAEDAPWKK--IQQNTFTR--WCNEHLKCVNKRIGNLQTDLSDGLRLIALL 57
Query: 129 EKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKW---SVESIHSKNLVP 185
E L+Q+++ + Q ++ + LE V+ AL + K ++I NL
Sbjct: 58 EVLSQKRMY-RKYHQRPTFRQMQ----LENVSVALEFLDRESIKLVSIDSKAIVDGNLKL 112
Query: 186 ILHLLVSLAL 195
IL L+ +L L
Sbjct: 113 ILGLVWTLIL 122
Score = 40.3 bits (94), Expect = 7e-04
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 356 TF---VNKHLAKVNLEVTDLDTQFHDGGFFVPL----------HDFYLTPQTFEQKVHNV 402
TF N+HL VN + +L T DG + L ++ P + ++ NV
Sbjct: 24 TFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENV 83
Query: 403 AFAFQLMQDVGLAKPKARPED 423
+ A + + + +
Sbjct: 84 SVALEFLDRESIKLVSIDSKA 104
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 46.6 bits (110), Expect = 8e-06
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 51 AIDSPGNPTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRII 110
A S A E+ + E + +Q+ F W N+ L
Sbjct: 11 AGQSAAGAAPGGGVDTRDAEMPATEKDLAEDAPWKK--IQQNTFTR--WCNEHLKCVSKR 66
Query: 111 VKDLEEDLYDGQILQKLLEKLNQEKLDVP 139
+ +L+ DL DG L LLE L+Q+K+
Sbjct: 67 IANLQTDLSDGLRLIALLEVLSQKKMHRK 95
Score = 42.0 bits (98), Expect = 2e-04
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 356 TF---VNKHLAKVNLEVTDLDTQFHDGGFFVPL----------HDFYLTPQTFEQKVHNV 402
TF N+HL V+ + +L T DG + L P + ++ NV
Sbjct: 51 TFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENV 110
Query: 403 AFAFQLMQDVGLAKPKARPED 423
+ A + + + +
Sbjct: 111 SVALEFLDRESIKLVSIDSKA 131
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 45.9 bits (108), Expect = 1e-05
Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 23/161 (14%)
Query: 46 QEGKHAIDSPGNPTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELA 105
Q + + G+ + E + +ER ++Q+ F W+N L
Sbjct: 40 QRSRRSGGGAGSNGSVLDPAERAVIRIADERD----------RVQKKTFTK--WVNKHLI 87
Query: 106 DQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGL 165
+ + DL EDL DG L LLE L+ + L P K L+ V AL
Sbjct: 88 KAQRHISDLYEDLRDGHNLISLLEVLSGDSL--PREKGRMRFHK------LQNVQIALDY 139
Query: 166 PRWSNTKW---SVESIHSKNLVPILHLLVSLALGLPRWSNT 203
R K + I N L L+ ++ L
Sbjct: 140 LRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 180
Score = 45.5 bits (107), Expect = 2e-05
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 304 SLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLA 363
+L + R+ + + + + A + D D++Q KK+ +VNKHL
Sbjct: 31 TLPWNLGKTQRSRRSGGGAGSNGSVLDPAERAVIRIADER-DRVQ--KKTFTKWVNKHLI 87
Query: 364 KVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFE--------QKVHNVAFAFQLMQDVGLA 415
K ++DL DG + L + L+ + K+ NV A ++ +
Sbjct: 88 KAQRHISDLYEDLRDGHNLISLLE-VLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVK 146
Query: 416 KPKARPED 423
R +D
Sbjct: 147 LVNIRNDD 154
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 44.6 bits (105), Expect = 4e-05
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 90 QELIFVLIEWINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDVPE 140
++ FV WIN L + DL + + DG +L K++ + +D
Sbjct: 25 EKYAFV--NWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERA 82
Query: 141 VTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKW---SVESIHSKNLVPILHLLVSLAL 195
+ + + E +N AL E + + +L LL +
Sbjct: 83 INKKKLTPFII----QENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIK 136
Score = 28.8 bits (64), Expect = 4.5
Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 20/93 (21%)
Query: 351 KKSLITFVNKHLAK---------VNLEVTDLDTQFHDG-----------GFFVPLHDFYL 390
K + + ++NK L +N DL DG +
Sbjct: 26 KYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINK 85
Query: 391 TPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
T N+ A +G ED
Sbjct: 86 KKLTPFIIQENLNLALNSASAIGCHVVNIGAED 118
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 44.0 bits (103), Expect = 8e-05
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 39/149 (26%)
Query: 90 QELIFVLIEWINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDVPE 140
+ F+ + IN LA + + + DG IL KL+ + +D
Sbjct: 13 ERREFI--KHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERV 70
Query: 141 VTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRW 200
+ + + +E N + S +++ ++ I
Sbjct: 71 LNKQRNNKPLDNFKCIENNNVVI---------NSAKAMGGISITNI-------------- 107
Query: 201 SNTKWSVESIHSKNLVPILHLLVSLVRHF 229
I IL L+ ++R
Sbjct: 108 -----GAGDILEGREHLILGLVWQIIRRG 131
Score = 41.3 bits (96), Expect = 6e-04
Identities = 53/359 (14%), Positives = 106/359 (29%), Gaps = 61/359 (16%)
Query: 96 LIEWINDEL--ADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLA 153
L+ W N L A+ V + +D+ DG+ LL +L E + ++ Q+
Sbjct: 166 LLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTD--VLQRAE 223
Query: 154 IVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSK 213
VL+ K L ++ + ++ + N L + L P +
Sbjct: 224 QVLQNAEK-LDCRKYL----TPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEP 278
Query: 214 NLVPILHLLVSLVRHFRAPVRLP------ENVSVGVVVVQL---------DVPEVTQSEE 258
+ P N+ G++++Q + +V ++
Sbjct: 279 FDAEGEREARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPA 338
Query: 259 GQKQKLAI-VLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIK 317
+ + +E N A+ L + N +S+ I ++ +GS +
Sbjct: 339 SGDEMMRFKAVENCNYAVDLGK--NQGFSLVGIQGADIT-----------DGSRTL---- 381
Query: 318 EEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVT---DLDT 374
T + + TL + ++ + N AK D
Sbjct: 382 -----TLALVWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDP 436
Query: 375 QFHDGGFFVPLHDFY----------LTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
G F + + T E + N A + + +G PED
Sbjct: 437 SISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAVI-FILPED 494
Score = 28.9 bits (64), Expect = 4.3
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 25/98 (25%)
Query: 351 KKSLITFVNKHLAK---------VNLEVTDLDTQFHDGGFFVPL---------------H 386
++ I +N LA +N E + Q DG L
Sbjct: 14 RREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNK 73
Query: 387 DFYLTPQTFEQKVHNVAFAFQLMQDVGLAK-PKARPED 423
P + + N + +G D
Sbjct: 74 QRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGD 111
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 43.5 bits (102), Expect = 1e-04
Identities = 41/384 (10%), Positives = 95/384 (24%), Gaps = 77/384 (20%)
Query: 88 KLQELIFVLIEWINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDV 138
+ ++ FV + IN L D + L E + DG +L KL+ +D
Sbjct: 6 QSEKGPFV--QHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDE 63
Query: 139 PEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKW---SVESIHSKNLVPILHLLVSLAL 195
+ + E L + + + +L L+ L
Sbjct: 64 RAINT---KRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIK 120
Query: 196 ----------GLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENV------ 239
P+ + + +P +L+ + + V
Sbjct: 121 IQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSAD 180
Query: 240 -SVGVVVVQL-------DVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIH 291
L T + ++ +VL + + R+ + E I
Sbjct: 181 LKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRYL----TAEEIV 235
Query: 292 SKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVK 351
+ S + ++ G+ + + +
Sbjct: 236 EGS-----------------STLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDE 278
Query: 352 KSLITFVNKHLAKVNLEVTDLDTQFHDG-----------GFFVPLHDFYLTPQTFE-QKV 399
+ ++N ++ V ++ +G V P +KV
Sbjct: 279 RCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKV 336
Query: 400 HNVAFAFQLMQDVGLAKPKARPED 423
N ++ + + + D
Sbjct: 337 ENCNQVIKIGKQLKFSLVNVAGND 360
Score = 37.8 bits (87), Expect = 0.009
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 99 WINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEA 158
WIN D V ++ ED+ +G IL ++L+K++ ++ ++ + +E
Sbjct: 284 WINSLGIDSY--VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRK---VEN 338
Query: 159 VNKALGLPRWSNTKWSVESIHSKNLV 184
N+ + + K+S+ ++ ++V
Sbjct: 339 CNQVIKI--GKQLKFSLVNVAGNDIV 362
Score = 35.1 bits (80), Expect = 0.057
Identities = 52/366 (14%), Positives = 116/366 (31%), Gaps = 55/366 (15%)
Query: 85 DDPKLQELIFVLIEWINDELAD--QRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVT 142
++ VL++W+N L + V + DL D Q LL L E D +
Sbjct: 146 EELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLD 205
Query: 143 QSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSN 202
+ ++ +VL + + R+ + E I + L + + +
Sbjct: 206 AKD--PLERAELVLSHAER-MNCKRYL----TAEEIVEGSSTLNLAFVAQIFHERNGLNK 258
Query: 203 TKWSVESIHSKNLVPILHLLVSLVRHFRA-----PVR-LPENVSVGVVVVQL-DV--PEV 253
+ V + V + E+V G +++++ D P
Sbjct: 259 DGKYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSS 318
Query: 254 TQSEEGQKQKLAI---VLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGS 310
+ K + + +E N+ + + K+S+ ++ ++V +G+
Sbjct: 319 VNWKHASKPPIKMPFRKVENCNQVIKI--GKQLKFSLVNVAGNDIV-----------QGN 365
Query: 311 LSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKV--NLE 368
MR ++ ++++ N+ + + L+
Sbjct: 366 KKL-------ILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQ 418
Query: 369 VTDL-DTQFHDGGFFVPLHDFY---------LTPQ-TFEQKVHNVAFAFQLMQDVGLAKP 417
+ D G FF+ L +T T ++K N + + + +G +
Sbjct: 419 IESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSV- 477
Query: 418 KARPED 423
PED
Sbjct: 478 FLLPED 483
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 41.5 bits (97), Expect = 3e-04
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 99 WINDELADQR-----IIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLA 153
W+N L + DL EDL DG L LLE L+ + L +K ++
Sbjct: 20 WVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR---------EKGRMR 70
Query: 154 I-VLEAVNKALGLPRWSNTKW---SVESIHSKNLVPILHLLVSLALGLPRWSNTK 204
L+ V AL R K + I N L L+ ++ L
Sbjct: 71 FHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQV 125
Score = 36.1 bits (83), Expect = 0.017
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 356 TF---VNKHLAK-----VNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFE--------QKV 399
TF VNKHL K ++DL DG + L + L+ + K+
Sbjct: 16 TFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLE-VLSGDSLPREKGRMRFHKL 74
Query: 400 HNVAFAFQLMQDVGLAKPKARPED 423
NV A ++ + R +D
Sbjct: 75 QNVQIALDYLRHRQVKLVNIRNDD 98
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 39.6 bits (92), Expect = 0.002
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 19/132 (14%)
Query: 88 KLQELIFVLIEWINDELADQRII-VKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEE 146
+Q+ F W+N + + +++L DL DG+ L LLE L +KL
Sbjct: 15 DVQKKTFTK--WVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-------- 64
Query: 147 GQKQKLAIV-LEAVNKALGL---PRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSN 202
+K + L VNKAL + I N L L+ ++ L W
Sbjct: 65 -EKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIIL---HWQV 120
Query: 203 TKWSVESIHSKN 214
+
Sbjct: 121 KNVMKNIMAGLQ 132
Score = 37.6 bits (87), Expect = 0.005
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 336 FDTLFDHHPDKLQVVKKSLITFVNKHLAKVNL-EVTDLDTQFHDGGFFVPLHDFYLTPQT 394
+ + ++ V KK+ +VN +K + +L + DG + L + LT Q
Sbjct: 3 WWEEVEDSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEG-LTGQK 61
Query: 395 FE--------QKVHNVAFAFQLMQDVGLAKPKARPED 423
++NV A +++Q+ + D
Sbjct: 62 LPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTD 98
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 40.3 bits (93), Expect = 0.002
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 99 WINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAI-VLE 157
W N L ++++EED DG L LLE ++ E+L PE + K+ + +
Sbjct: 16 WCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE--------RGKMRVHKIS 67
Query: 158 AVNKALGLPRWSNTKW---SVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKN 214
VNKAL K E I N+ L ++ ++ L R++ SVE +K
Sbjct: 68 NVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIIL---RFAIQDISVEETSAKE 124
Score = 35.3 bits (80), Expect = 0.059
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 356 TF---VNKHLAKVNLEVTDLDTQFHDGGFFVPLHD--------FYLTPQTFEQKVHNVAF 404
TF N HL K ++ +++ F DG + L + + K+ NV
Sbjct: 12 TFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNK 71
Query: 405 AFQLMQDVGLAKPKARPED 423
A + G+ E+
Sbjct: 72 ALDFIASKGVKLVSIGAEE 90
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 33.0 bits (75), Expect = 0.14
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 47 EGKHAIDSPGNPTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELAD 106
+ + + + + ++ +AYD + +WI + L
Sbjct: 15 DVNVGLSRLQSQAGAPVGTKGSNTRLAAKQ-RETLQAYDYLCRVDE---AKKWIEECLGT 70
Query: 107 QRIIVKDLEEDLYDGQILQKLLEKLNQEKL-DVPEVTQSEEGQKQKLAIVLEAVNKALGL 165
E+ L +G +L L++K +KL + + + + L+ + +GL
Sbjct: 71 DLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFI-HGIGL 129
Query: 166 PR 167
P
Sbjct: 130 PE 131
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction,
receptor complex, hydrolase, TR protein, ADP binding,
coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae}
PDB: 3zs8_C
Length = 84
Score = 30.9 bits (69), Expect = 0.19
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 422 EDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSI 463
+D +AK + +RK+ +L ++ + + +
Sbjct: 42 QDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 83
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 32.2 bits (73), Expect = 0.26
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 72 ENEERSMLEPRAYD-DPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEK 130
E + + AY+ L+E W+ L + +LEE L +G L KL
Sbjct: 9 EEMDERRRQNVAYEYLCHLEEAK----RWMEACLGEDLPPTTELEEGLRNGVYLAKLGNF 64
Query: 131 LNQEKLDVPEV 141
+ + + + ++
Sbjct: 65 FSPKVVSLKKI 75
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 31.9 bits (72), Expect = 0.27
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 82 RAYD-DPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPE 140
AY+ L+E W+ L + +LEE L +G L KL + + + + +
Sbjct: 41 VAYEYLCHLEEAK----RWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKK 96
Query: 141 V 141
+
Sbjct: 97 I 97
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion,
ATP binding, membrane PR binding; HET: ADP; 4.50A
{Saccharomyces cerevisiae}
Length = 94
Score = 30.5 bits (68), Expect = 0.30
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 422 EDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSI 463
+D +AK + +RK+ +L ++ + + +
Sbjct: 52 QDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 93
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex,
TA-protein biogenesis, GET PA hydrolase-transport
protein complex; 3.30A {Saccharomyces cerevisiae}
Length = 93
Score = 30.1 bits (67), Expect = 0.43
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 422 EDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSI 463
+D +AK + +RK+ +L ++ + + +
Sbjct: 45 QDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 31.7 bits (72), Expect = 0.67
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 84 YDDPKLQELIFVLIEWINDELADQRIIV-KDLEEDLYDGQILQKLLEKLNQEKLDVPEVT 142
P +E + I +++ + +IV D+ E++ Q + LE +
Sbjct: 50 PWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEI--SQDFKSPLENDPNRPHILYTGP 107
Query: 143 QSEEGQKQKLAIVL 156
+ + + L + L
Sbjct: 108 EQDIVNRTDLLVTL 121
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 30.2 bits (68), Expect = 0.96
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 82 RAYD-DPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKL-DVP 139
+AYD ++ E +WI + L E+ L +G +L L++K +KL +
Sbjct: 5 QAYDYLCRVDEAK----KWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIF 60
Query: 140 EVTQSEEGQKQKLAIVLEAVNKALGLPR 167
+ + + L+ + +GLP
Sbjct: 61 YSNELQFRHSDNINKFLDFI-HGIGLPE 87
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex,
TA-protein biogenesis, GET PA hydrolase-transport
protein complex; 3.00A {Saccharomyces cerevisiae} PDB:
3sjc_C
Length = 65
Score = 28.2 bits (62), Expect = 1.1
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 422 EDEFAKHARLSRKISALQAQLEK 444
+D +AK + +RK+ +L ++
Sbjct: 28 QDNYAKWTKNNRKLDSLDKEINN 50
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper
transfer, oxidoreductase-metal transport complex; 1.16A
{Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A
1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A
2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A
3aww_A 3awx_A 3awy_A ...
Length = 281
Score = 30.1 bits (67), Expect = 1.7
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 357 FVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAF 406
FV H + + + H F+P H +L FEQ + +V +
Sbjct: 34 FVRTHNEFIMSDTDSGERTGHRSPSFLPWHRRFLL--DFEQALQSVDSSV 81
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 87 PKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEE 146
P+ + L WI + I + + L DG IL +L+ KL +
Sbjct: 2 PQTERQ---LRVWIEGATGRR--IGDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNW 56
Query: 147 GQKQKLAIVLEAVNKALGLPR 167
+ + + L A+ K G+
Sbjct: 57 HKLENIGNFLRAI-KHYGVKP 76
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.8
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 34 RKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYALEENE--ERSMLEPRAYDDPKLQE 91
++KR++E+ + + DL EE+ ++E E++ + R D Q+
Sbjct: 94 QRKRLQELDAASKVMEQEWREKA---KKDL--EEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.0
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 19/47 (40%)
Query: 35 KKRIKEVQEVEQEGK-HAIDSPGNPTNPDLAPEEYALEENEERSMLE 80
K+ +K++ + K +A D AP AL + +E
Sbjct: 19 KQALKKL---QASLKLYA---------DDSAP---ALAIK---ATME 47
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 28.8 bits (65), Expect = 4.8
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 97 IEWINDELADQRIIVKDLEEDLYDGQILQKLLEKL-----NQEKLDVPEVTQSEEGQKQK 151
IE++ E+ D + IL K +K Q+ + + G
Sbjct: 131 IEFLEREI------------DYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVN 178
Query: 152 LAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVS 192
V EA++K L LP TKWS + + V+
Sbjct: 179 ENDVWEAMHK-LNLPE-DPTKWSQDDLL---AFASEIRRVN 214
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 28.7 bits (65), Expect = 5.1
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 32/108 (29%)
Query: 80 EPRAYDDPKLQELIFVLIEWINDE-----------------LADQRIIVKDLEEDLYDGQ 122
EP A DP I L+ + E D + V + +G+
Sbjct: 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCD-NVFV------MKEGR 221
Query: 123 ILQ--------KLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKA 162
++ E + + L +P + E K+K V + +++
Sbjct: 222 VILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEG 269
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 26.7 bits (60), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 233 VRLPENVSVGVVVVQL 248
V +PEN VG V+QL
Sbjct: 21 VHIPENAPVGTSVIQL 36
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: APC; 2.80A {Aquifex aeolicus}
SCOP: a.173.1.1 d.218.1.4
Length = 390
Score = 27.8 bits (62), Expect = 9.3
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 83 AYDDPKLQELIF-VLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEV 141
+ +L+E I L + +L +++L++ G+ L + +E+L +E ++ ++
Sbjct: 328 LMLEEELKEKIKLYLEKLRKVKLPK--EKIEELKKQGLKGKELGERIEELKREIMNKIKL 385
Query: 142 TQSEE 146
+ E
Sbjct: 386 AAALE 390
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 26.7 bits (60), Expect = 9.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 233 VRLPENVSVGVVVVQL 248
L EN + G ++QL
Sbjct: 21 ADLAENSAPGTPILQL 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,061,162
Number of extensions: 484621
Number of successful extensions: 1114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 66
Length of query: 526
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 428
Effective length of database: 3,965,535
Effective search space: 1697248980
Effective search space used: 1697248980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)