RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2679
(526 letters)
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 88.2 bits (218), Expect = 4e-19
Identities = 57/397 (14%), Positives = 107/397 (26%), Gaps = 95/397 (23%)
Query: 97 IEWINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEG 147
I+ IN LA + + + DG IL KL+ + +D + +
Sbjct: 10 IKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNN 69
Query: 148 QKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSV 207
+ +E N + + S+ +I + +++ L
Sbjct: 70 KPLDNFKCIENNNVVINSAKA-MGGISITNIGAGDILEGREHL----------------- 111
Query: 208 ESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIV 267
IL L+ ++R +++ D ++ L
Sbjct: 112 ----------ILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRW 161
Query: 268 LEAVNKALGLPRW-SNTKWSVESIHSKNLVPILHL----LVSLKKEGSLSHRTIKEEITS 322
KA PR SN V +N +L+ L S + E++
Sbjct: 162 FNYHLKAANWPRTVSNFSKDVSD--GENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQ 219
Query: 323 TYDDLGMRCERDAFD--------------TLFDHHP-----------------DKLQVVK 351
+ L R LF+ HP + +
Sbjct: 220 NAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREA 279
Query: 352 KSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFE--------------- 396
+ ++N V + D DG + +D +TP T
Sbjct: 280 RVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYD-KITPNTVNWKKVNKAPASGDEMM 336
Query: 397 --QKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARL 431
+ V N +A L ++ G + + D L
Sbjct: 337 RFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTL 373
Score = 65.1 bits (158), Expect = 8e-12
Identities = 55/396 (13%), Positives = 112/396 (28%), Gaps = 71/396 (17%)
Query: 65 PEEYALEENEERSML--EPRAYDDPKLQELIFVLIEWINDELADQR--IIVKDLEEDLYD 120
+ + + E L E D +L+ W N L V + +D+ D
Sbjct: 125 LGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSD 184
Query: 121 GQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHS 180
G+ LL +L E + Q+ VL+ K L ++ ++ +
Sbjct: 185 GENYTVLLNQLAPELCSRAPL--QTTDVLQRAEQVLQNAEK-LDCRKYLT----PTAMVA 237
Query: 181 KNLVPILHLLVSLALGLP------------------RWSNTKWSVESIHSKNLV-PILHL 221
N L + L P + V P +H
Sbjct: 238 GNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLNSLDVTPSIHD 297
Query: 222 LVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAI-VLEAVNKALGLPRW 280
+ +R ++ + ++ ++ +V ++ + + +E N A+ L +
Sbjct: 298 FFNNLRDGLILLQAYDKITPN----TVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGK- 352
Query: 281 SNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLF 340
N +S+ I ++ L + K TL
Sbjct: 353 -NQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITK--------------------TLH 391
Query: 341 DHHPDKLQVVKKSLITFVNKHLAK--VNLEVTDL-DTQFHDGGFFVPL----------HD 387
+ ++ + N AK ++ D G F + + ++
Sbjct: 392 SLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYN 451
Query: 388 FYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
T E + N A + + +G PED
Sbjct: 452 LVTDGSTEELAIQNARLAISIARKLGAVI-FILPED 486
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 80.4 bits (198), Expect = 1e-16
Identities = 47/396 (11%), Positives = 103/396 (26%), Gaps = 86/396 (21%)
Query: 99 WINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQK 149
IN L D + L E + DG +L KL+ +D + +
Sbjct: 9 HINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINT---KRV 65
Query: 150 QKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLV-----PILHLLVSLAL--------- 195
E L SV +I +++L +L L+ L
Sbjct: 66 LNPWERNENHTLCLNS--AKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNL 123
Query: 196 -GLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSV---------GVVV 245
P+ + + +P +L+ + + +V
Sbjct: 124 KKTPQLVELLEDSDDVEELLRLPPEKVLLKWMN--FHLKKGGYKKTVSNFSADLKDAQAY 181
Query: 246 VQL-------DVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPI 298
L T + ++ +VL + + R+ + E I +
Sbjct: 182 AFLLNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRY----LTAEEIVEGSSTLN 236
Query: 299 LHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFV 358
L + + + L + + + + ++ ++
Sbjct: 237 LAFVAQIFH---------------ERNGLNKDGKYAFAEMMT--EDVETCRDERCYRLWI 279
Query: 359 NKHLAKVNLEVTDLDTQFHDG------------GFFVPLHDFYLTPQTFEQKVHNVAFAF 406
N ++ V ++ +G H + +KV N
Sbjct: 280 NSL--GIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVI 337
Query: 407 QLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQL 442
++ + + + D + +L I L QL
Sbjct: 338 KIGKQLKFSLVNVAGNDIVQGNKKL---ILGLLWQL 370
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 57.3 bits (138), Expect = 7e-11
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 84 YDDPKLQELIFVLIEWINDELA-DQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVT 142
Y+ +Q+ F W+N + + + +++L DL DG+ L LLE L +KL + +
Sbjct: 3 YEREDVQKKTFTK--WVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGS 60
Query: 143 QSEEGQKQKLAIVLEAVNKALGLPR---WSNTKWSVESIHSKNLVPILHLLVSLAL 195
VNKAL + + I N L L+ ++ L
Sbjct: 61 TRVHAL--------NNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIIL 108
Score = 41.5 bits (97), Expect = 2e-05
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 348 QVVKKSLITFVNKHLAKVN-LEVTDLDTQFHDG-------GFFVPLHDFYLTPQTFEQKV 399
V KK+ +VN +K + +L + DG T +
Sbjct: 7 DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHAL 66
Query: 400 HNVAFAFQLMQDVGLAKPKARPEDEFAKHARL 431
+NV A +++Q+ + D + +L
Sbjct: 67 NNVNKALRVLQNNNVDLVNIGSTDIVDGNHKL 98
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 54.6 bits (131), Expect = 8e-10
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 88 KLQELIFVLIEWINDELADQRII-----VKDLEEDLYDGQILQKLLEKLNQEKLDVPEVT 142
++Q+ F W+N L + DL EDL DG L LLE L+ + L +
Sbjct: 4 RVQKKTFTK--WVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGR 61
Query: 143 QSEEGQKQKLAIVLEAVNKALGLPR---WSNTKWSVESIHSKNLVPILHLLVSLAL 195
L+ V AL R + I N L L+ ++ L
Sbjct: 62 MRFHK--------LQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIIL 109
Score = 43.4 bits (102), Expect = 5e-06
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 348 QVVKKSLITFVNKHLAK-----VNLEVTDLDTQFHDGGFFVPLHD-------FYLTPQTF 395
+V KK+ +VNKHL K ++DL DG + L + +
Sbjct: 4 RVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMR 63
Query: 396 EQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARL 431
K+ NV A ++ + R +D + +L
Sbjct: 64 FHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKL 99
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 41.9 bits (98), Expect = 2e-05
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 20/101 (19%)
Query: 351 KKSLITFVNKHLAK---------VNLEVTDLDTQFHDG-----------GFFVPLHDFYL 390
K + + ++NK L +N DL DG +
Sbjct: 6 KYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINK 65
Query: 391 TPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARL 431
T N+ A +G ED A L
Sbjct: 66 KKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHL 106
Score = 35.8 bits (82), Expect = 0.003
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 96 LIEWINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEE 146
+ WIN L + DL + + DG +L K++ + +D + + +
Sbjct: 9 FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKL 68
Query: 147 GQKQKLAIVLEAVNKA 162
+ A+N A
Sbjct: 69 TPFIIQENLNLALNSA 84
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 36.9 bits (85), Expect = 0.001
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 17/89 (19%)
Query: 351 KKSLITFVNKHLAKVN-LEVTDLDTQFHDG---------------GFFVPLHDFYLTPQT 394
++ L+ + N HL ++ + D P D ++
Sbjct: 11 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFN 70
Query: 395 FEQKVHNVAFAFQLMQDVGLAKPKARPED 423
+ Q +G + P D
Sbjct: 71 ETDDLKRAESMLQQADKLGC-RQFVTPAD 98
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 33.1 bits (75), Expect = 0.034
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 98 EWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLD-VPEVTQSEEGQKQKLAIVL 156
+WI + L E+ L +G +L L++K +KL + + + + L
Sbjct: 18 KWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFL 77
Query: 157 EAVNKALGLPRWSNTKWSVESIH-SKNLVPILHLLVSLAL 195
+ + +GLP + + I+ KNL +++ + +L+
Sbjct: 78 DFI-HGIGLPE--IFHFELTDIYEGKNLPKVIYCIHALSY 114
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli
[TaxId: 562]}
Length = 240
Score = 33.4 bits (76), Expect = 0.050
Identities = 14/134 (10%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 65 PEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQIL 124
++ +E ++ R + + + L + + + + ++ + YD + +
Sbjct: 121 IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADR-YDAKAV 179
Query: 125 QKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLV 184
++ L + + + ++ E K + + + V+ I ++
Sbjct: 180 KERLAMMTPQNARIWYISPKEPHNKTA---------------YFVDAPYQVDKISAQTFA 224
Query: 185 PILHLLVSLALGLP 198
+AL LP
Sbjct: 225 DWQKKAADIALSLP 238
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 31.5 bits (71), Expect = 0.075
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 351 KKSLITFVNKHLAKVNLEVTDL---DTQFHDGGFF-----------VPLHDFYLTPQTFE 396
++ +VN+ L++ + D + T +
Sbjct: 9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTED 68
Query: 397 QKVHNVAFAFQLMQDVGLAKPKARPED 423
K +N +A + + +G + A PED
Sbjct: 69 DKHNNAKYAVSMARRIGA-RVYALPED 94
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 30.3 bits (68), Expect = 0.15
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 351 KKSLITFVNKHLAKV-NLEVTDLDTQFHDGGFFVPL------HDFYLTPQTFEQKVHNVA 403
K +L+ + A N+ + + T + DG F L +N+
Sbjct: 4 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQ 63
Query: 404 FAFQLMQDVGLAKPKARPEDE 424
AF L + PED
Sbjct: 64 NAFNLAEQHLGLTKLLDPEDI 84
>d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 27.9 bits (62), Expect = 2.0
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 62 DLAPEEYALEENEERSMLEPRAYDDP----------KLQELIFVLIEWIN-DELADQRII 110
D + L E + P L+E ++ + E + I
Sbjct: 62 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI 121
Query: 111 VKDLEEDLYDGQILQKLLEKLNQEKLD 137
V+ L EDL D +QK LE+L QE++
Sbjct: 122 VRSLYEDLEDHPNVQKDLERLTQERIA 148
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 27.7 bits (61), Expect = 3.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 242 GVVVVQLDVPEVTQSEEGQKQKLAIV-LEAVNKALGLPRWSNTKW 285
G+ V Q E + Q +V E + +G N +
Sbjct: 302 GLFVAQNG--ENIDHGQKANQNFKMVPWERIADKIGFHPQVNKQV 344
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli
[TaxId: 562]}
Length = 133
Score = 26.7 bits (59), Expect = 3.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 229 FRAPVRLPENVSVGVVVVQLDVPEVTQS 256
P+ + +GVV + L++ VTQ
Sbjct: 103 VFTPIYDENHKQIGVVAIGLELSRVTQQ 130
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 26.1 bits (57), Expect = 6.6
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 96 LIEWIN----DELADQRIIVKDLEEDLYDGQILQKLLEKL 131
L+EWI ++ + L +G IL KL+ L
Sbjct: 14 LVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSL 53
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 8.7
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 36/130 (27%)
Query: 25 FWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYA-------------LE 71
+ +L KK I + +E+ ++ ++ D E + +
Sbjct: 108 GESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT 167
Query: 72 ENEERSMLEPRAYDDPKLQELIFVLIEWINDE----------------LADQRIIVKDLE 115
+ M EP A P L IF + + + D + V
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID-HLYV---- 222
Query: 116 EDLYDGQILQ 125
+++GQI+
Sbjct: 223 --MFNGQIIA 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,960,903
Number of extensions: 92554
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 29
Length of query: 526
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 437
Effective length of database: 1,185,626
Effective search space: 518118562
Effective search space used: 518118562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)