BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2680
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q95RI5|FAXC_DROME Failed axon connections OS=Drosophila melanogaster GN=fax PE=2 SV=1
Length = 418
Score = 243 bits (621), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 143/178 (80%), Gaps = 3/178 (1%)
Query: 3 WRTKYPDNVIKGYKVNLQHALGTRIPNGLLNFFFKFNYVRK---GTKKVKAQGIGVHKPE 59
WR KYPDNV+KGYKVNLQHALG R+PN +LNFFFK + RK GTKK+KA GIGVH E
Sbjct: 212 WRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFGRKWFQGTKKLKAHGIGVHSAE 271
Query: 60 EIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLRDYLETT 119
EIEEFGK+DLKVL++ML K FFFG+EPTTLDVVAFA ++Q++ + KD+ +PLRDY+
Sbjct: 272 EIEEFGKDDLKVLSEMLDCKPFFFGDEPTTLDVVAFAVLSQLHYLSKDIAYPLRDYMTEK 331
Query: 120 HSNLVAHINRIKNRCFPDWDDICNNLDLNAHLPKPPPEEKEEKEKEEKKEGDKEAETE 177
NL+ H++R+K++CFPDWD+IC LDLNAH+PKP PE KE KE E+++ +++ TE
Sbjct: 332 CPNLIGHVSRMKDKCFPDWDEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTE 389
>sp|F7E235|FAXC_XENTR Failed axon connections homolog OS=Xenopus tropicalis GN=faxc PE=3
SV=1
Length = 406
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 46 KKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCID 105
+++ QGIG EEI + D++ LA +LGDK + G + +TLD F HIA
Sbjct: 241 REMYGQGIGRFSEEEIYRLMEKDMRSLAGLLGDKKYLMGPKFSTLDATVFGHIANALWGT 300
Query: 106 KDVEFPLRDYLETTHSNLVAHINRIKNRCFPDWDD 140
+ + + NL + RI+ + +P+W D
Sbjct: 301 QGTY--KEEGIAGELINLAMYCERIRRKFWPEWHD 333
>sp|D3ZAT9|FAXC_RAT Failed axon connections homolog OS=Rattus norvegicus GN=Faxc PE=2
SV=1
Length = 409
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 40 YVRKGT--KKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAH 97
++ KG +++ GIG EEI + D++ LA +LGDK + G + +TLD F H
Sbjct: 236 HITKGIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYIMGPKLSTLDATVFGH 295
Query: 98 IAQIYCIDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDW 138
+AQ P R ++ NL + RI+ + +P+W
Sbjct: 296 LAQAMWTLPGTR-PER-LIKGELINLAMYCERIRRKFWPEW 334
>sp|Q3UMF9|FAXC_MOUSE Failed axon connections homolog OS=Mus musculus GN=Faxc PE=2 SV=1
Length = 409
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 40 YVRKGT--KKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAH 97
++ KG +++ GIG EEI + D++ LA +LGDK + G + +TLD F H
Sbjct: 236 HITKGIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYIMGPKLSTLDATVFGH 295
Query: 98 IAQIYCIDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDW 138
+AQ P R ++ NL + RI+ + +P+W
Sbjct: 296 LAQAMWTLPGTR-PER-LIKGELINLAMYCERIRRKFWPEW 334
>sp|Q5TGI0|FAXC_HUMAN Failed axon connections homolog OS=Homo sapiens GN=FAXC PE=2 SV=2
Length = 409
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 40 YVRKGT--KKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAH 97
++ KG +++ GIG EEI + D++ LA +LGDK + G + +TLD F H
Sbjct: 236 HITKGIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYIMGPKLSTLDATVFGH 295
Query: 98 IAQIYCIDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDW 138
+AQ P R ++ NL + RI+ + +P+W
Sbjct: 296 LAQAMWTLPGTR-PER-LIKGELINLAMYCERIRRKFWPEW 334
>sp|O88441|MTX2_MOUSE Metaxin-2 OS=Mus musculus GN=Mtx2 PE=1 SV=1
Length = 263
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLD 91
LN + + +K+KA G G +++ E + L+ LG + +FF ++PT LD
Sbjct: 153 LNHILAYQKQWEVKRKMKAIGWGNKTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTELD 212
Query: 92 VVAFAHIAQIYC---IDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDW 138
+ F H+ I ++ +++Y SNL+A RI+ F DW
Sbjct: 213 ALVFGHLYTILTTQLTSDELSEKVKNY-----SNLLAFCRRIEQHYFEDW 257
>sp|P47802|MTX1_MOUSE Metaxin-1 OS=Mus musculus GN=Mtx1 PE=1 SV=1
Length = 317
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEF-------GKNDLKVLADMLGDKAFFFG 84
LNFF R+ ++++ G HK E EE + L +L+ LG + FFFG
Sbjct: 135 LNFFLPGRMQRQYMERLQLL-CGEHKSENEEELEKELYQEARECLTLLSQRLGSQKFFFG 193
Query: 85 EEPTTLDVVAFAHIAQIYCIDKDVEFP---LRDYLETTHSNLVAHINRIKNRCFP-DWDD 140
+ P +LD F+H+A + + P L+ +L H NL A+ I N FP D D+
Sbjct: 194 DAPASLDAFVFSHLALLL----QAKLPSGKLQAHLRGLH-NLCAYCTHILNLYFPRDGDE 248
Query: 141 ICNNLDLNAHLPKPPPEEKEEKEKEEKKE 169
+ LP+ P E +E+ ++
Sbjct: 249 V--------PLPRQTPAAPETEEEPYRRR 269
>sp|Q27HK4|MTX1_PIG Metaxin-1 OS=Sus scrofa GN=MTX1 PE=2 SV=1
Length = 317
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEF-------GKNDLKVLADMLGDKAFFFG 84
LNFF R+ ++++ G H+PEE EE + L +L+ LG + FFFG
Sbjct: 135 LNFFLPGRMQRQYMERLQLL-CGEHRPEEEEELEKELYQEARECLTLLSQRLGAQKFFFG 193
Query: 85 EEPTTLDVVAFAHIAQIYCIDKDVEFP---LRDYLETTHSNLVAHINRIKNRCFPDWDDI 141
+ P +LD F+++A + + + P L+ +L H NL A+ I + FP W+
Sbjct: 194 DAPASLDAFVFSYLALL----QQAKLPSGKLQAHLRGLH-NLCAYCTHILSLYFP-WE-- 245
Query: 142 CNNLDLNAHLPKP---PPEEKEEKEKEEKK 168
A +P+P P + E+E ++
Sbjct: 246 ------GAEVPRPRQTPASSETEEEPYRRR 269
>sp|Q13505|MTX1_HUMAN Metaxin-1 OS=Homo sapiens GN=MTX1 PE=1 SV=2
Length = 466
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEF-------GKNDLKVLADMLGDKAFFFG 84
LNFF R+ ++++ G H+PE+ EE + L +L+ LG + FFFG
Sbjct: 284 LNFFLPGRMQRQYMERLQLL-TGEHRPEDEEELEKELYREARECLTLLSQRLGSQKFFFG 342
Query: 85 EEPTTLDVVAFAHIAQIYCIDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDWDD 140
+ P +LD F+++A + K L+ +L H NL A+ I + FP WD
Sbjct: 343 DAPASLDAFVFSYLA-LLLQAKLPSGKLQVHLRGLH-NLCAYCTHILSLYFP-WDG 395
>sp|Q4R3I0|MTX1_MACFA Metaxin-1 OS=Macaca fascicularis GN=MTX1 PE=2 SV=1
Length = 317
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEF-------GKNDLKVLADMLGDKAFFFG 84
LNFF R+ ++++ G H PE+ EE + L +L+ LG + FFFG
Sbjct: 135 LNFFLPGRMQRQYMERLELLS-GEHMPEDEEELEKELYREARECLTLLSQRLGSQKFFFG 193
Query: 85 EEPTTLDVVAFAHIAQIYCIDKDVEFP---LRDYLETTHSNLVAHINRIKNRCFPDWDDI 141
+ P +LD F+++A + + P L+ +L H NL A+ I + FP WD
Sbjct: 194 DAPASLDAFVFSYLALLL----QAKLPSGKLQAHLRGLH-NLCAYCTHILSLYFP-WD-- 245
Query: 142 CNNLDLNAHLPKPPPEEKEEKEKEEK 167
A +P PP + E EE+
Sbjct: 246 ------GAEVP-PPRQTPAGPETEEE 264
>sp|O75431|MTX2_HUMAN Metaxin-2 OS=Homo sapiens GN=MTX2 PE=1 SV=1
Length = 263
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLD 91
LN + + +K+KA G G +++ E + L+ LG + +FF ++PT LD
Sbjct: 153 LNHILAYQKQWEVKRKMKAIGWGKKTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTELD 212
Query: 92 VVAFAHIAQIYC---IDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPD 137
+ F H+ I + ++ +++Y SNL+A RI+ F D
Sbjct: 213 ALVFGHLYTILTTQLTNDELSEKVKNY-----SNLLAFCRRIEQHYFED 256
>sp|Q2L969|MTX2_PIG Metaxin-2 OS=Sus scrofa GN=MTX2 PE=2 SV=1
Length = 267
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLD 91
LN + + +K+KA G G +++ E + L+ LG + +FF ++PT LD
Sbjct: 153 LNHILAYQKQWEVKRKMKAIGWGNKTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTELD 212
Query: 92 VVAFAHIAQIYC---IDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPD 137
+ F H+ I + ++ +++Y SNL+A RI+ F D
Sbjct: 213 ALVFGHLYTILTTQLTNDELSEKVKNY-----SNLLAFCRRIEQHYFED 256
>sp|Q2TBS1|MTX1_BOVIN Metaxin-1 OS=Bos taurus GN=MTX1 PE=2 SV=1
Length = 317
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEF-------GKNDLKVLADMLGDKAFFFG 84
LNFF R+ ++++ G H+PE+ EE + L +L+ LG + FFFG
Sbjct: 135 LNFFLPGRMQRQYMERLQLL-CGEHRPEDEEELEKELYQEAQECLTLLSQRLGSQKFFFG 193
Query: 85 EEPTTLDVVAFAHIAQIYCIDKDVEFP---LRDYLETTHSNLVAHINRIKNRCFPDWD 139
+ P +LD F+++A + + + P L+ +L H NL A+ I + FP W+
Sbjct: 194 DAPASLDAFVFSYLALL----QQAKLPSGKLQAHLRGLH-NLCAYCAHILSLYFP-WE 245
>sp|Q4VBW0|MTX3_DANRE Metaxin-3 OS=Danio rerio GN=mtx3 PE=2 SV=2
Length = 313
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 65 GKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLRDYLETTHSNLV 124
K L +L+ LG+ FFFG+ PT+LD F HIA + ++ PL L
Sbjct: 173 AKECLNLLSHRLGNFNFFFGDTPTSLDAFVFGHIAPL------IKAPLPS------GQLQ 220
Query: 125 AHINRIKNRCFPDWDDICNNL 145
H+N++ N C CN +
Sbjct: 221 KHLNQLDNLC-----QFCNTI 236
>sp|Q5HYI7|MTX3_HUMAN Metaxin-3 OS=Homo sapiens GN=MTX3 PE=1 SV=2
Length = 312
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 60 EIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLRDYLETT 119
+I K L +L++ LG FFFG+ P+TLD F +A +Y V FP
Sbjct: 168 QIYRDAKECLNLLSNRLGTSQFFFGDTPSTLDAYVFGFLAPLY----KVRFP-------- 215
Query: 120 HSNLVAHINRIKNRC 134
L H+ ++ N C
Sbjct: 216 KVQLQEHLKQLSNLC 230
>sp|Q9UUA5|MTXL_SCHPO Metaxin-like protein C409.19c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC409.19c PE=3 SV=1
Length = 450
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 42 RKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQI 101
R+ + +A+ I I + L ++ D F FGE+PT+LD + +A+++
Sbjct: 179 RQALLRTQARRI------RISSLARQVYGSLESLISDSKFIFGEKPTSLDCLFYAYLSFH 232
Query: 102 YCIDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDWDDICNNLDL 147
++ + LR L+ L A++ ++ F D +I + L +
Sbjct: 233 AFTNELPQATLRPCLQFNSPKLYAYLKSLRETWFSDDSNILSPLSI 278
>sp|O45503|MTX1_CAEEL Metaxin-1 homolog OS=Caenorhabditis elegans GN=mtx-1 PE=1 SV=1
Length = 312
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLD 91
L+F + Y+ K KK G + E ++E L L+ LGD FF G +PT+LD
Sbjct: 131 LHFPYNLYYLEKRRKKALRLLAGKNDTEILKE-AFMALNTLSTKLGDNKFFCGNKPTSLD 189
Query: 92 VVAFAHIAQIYCIDKDVEFPL-RDYLETTHS---NLVAHINRIKNRCFPDWDD 140
+ F ++A + + PL D L+ S NLV + + + P +D
Sbjct: 190 ALVFGYLAPL------LRVPLPNDRLQVQLSACPNLVRFVETVSSIYLPLGED 236
>sp|A8XWD1|MTX1_CAEBR Metaxin-1 homolog OS=Caenorhabditis briggsae GN=mtx-1 PE=3 SV=1
Length = 312
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 32 LNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLD 91
L+F + Y+ K KK + +G EI + L L+ LGD FF G +PT+LD
Sbjct: 131 LHFPYNLYYLEKRKKKA-LRMLGGKNDTEILKDAFMALNTLSTKLGDNKFFCGNKPTSLD 189
Query: 92 VVAFAHIAQIYCIDKDVEFPL-RDYLETTHS---NLVAHINRIKNRCFPDWDD 140
+ F ++A + + PL D L+ S NLV + + + P +D
Sbjct: 190 ALVFGYLAPL------LRVPLPNDRLQVQLSACPNLVRFVETVSSIYLPLSED 236
>sp|Q3KPT9|MTX3_XENLA Metaxin-3 OS=Xenopus laevis GN=mtx3 PE=2 SV=2
Length = 309
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 60 EIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLRDYLETT 119
+I + K L + ++ LG +FFG PT+LD F +A +Y + +L
Sbjct: 165 QIYKDAKECLNLFSNRLGTAQYFFGSTPTSLDAFVFGFLAPLY----------KAHLHKV 214
Query: 120 HSNLVAHINRIKNRC 134
NL H+ ++ N C
Sbjct: 215 --NLQQHLKQLSNLC 227
>sp|Q9W0P8|MED14_DROME Mediator of RNA polymerase II transcription subunit 14 OS=Drosophila
melanogaster GN=MED14 PE=1 SV=4
Length = 1553
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 125 AHINRIKNRC--FPDWDDICNNLDLNAHLPKPPPEE 158
A N +N+C FP D+ NL L A +P+PPP +
Sbjct: 1467 AEFNAQQNQCTLFPAITDLLTNLQLAAEMPQPPPNQ 1502
>sp|O64471|MTX_ARATH Mitochondrial outer membrane import complex protein METAXIN
OS=Arabidopsis thaliana GN=MTX1 PE=1 SV=1
Length = 315
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 34 FFFKFNYV---RKGTKKVKAQGIGVHKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTL 90
F+K Y+ R G K A+ + ++I + + L+ LG++ F F + P++L
Sbjct: 140 LFYKQTYLAKNRLGITKENAE----QREKQIYKRASEAYEALSTRLGEQKFLFEDRPSSL 195
Query: 91 DVVAFAHIAQIYCIDKDVEFPLRDYLETT---HSNLVAHINRIKN 132
D +HI ++ I P+ L HSNLV + ++K+
Sbjct: 196 DAFLLSHI--LFIIQA---LPVTSVLRCKLLEHSNLVRYAEKLKS 235
>sp|Q9HE00|MTX1_SCHPO Metaxin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mtx1 PE=3 SV=1
Length = 271
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 59 EEIEEFGKNDLKVLADMLG-DKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLR-DYL 116
+ I E L+++LG DK FF E P+ LDV FAH A+I PL+ D L
Sbjct: 186 DAILEDASKAFSALSELLGSDKWFFNNESPSFLDVSLFAH-AEIIN-----HLPLKNDQL 239
Query: 117 ET---THSNLVAHINRIK 131
+ TH NL R++
Sbjct: 240 KVVLGTHKNLTDLTTRVR 257
>sp|P30713|GSTT2_RAT Glutathione S-transferase theta-2 OS=Rattus norvegicus GN=Gstt2
PE=1 SV=3
Length = 244
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 47 KVKAQGIGVHKPEEIEEFGKNDLKVLA------DMLGDKAFFFGEEPTTLDVVAFAHIAQ 100
KV IGV PEE E +N + VLA L D+AF G++ T D+++ + Q
Sbjct: 117 KVLGPLIGVQVPEEKVERNRNSM-VLALQRLEDKFLRDRAFIAGQQVTLADLMSLEELIQ 175
Query: 101 IYCIDKDVEFPLRDYLETTHSNLVAHINRIKNRCFPDWDDICNNLDLNAH--LPKPPPE 157
+ ++ F R L + A + C + I + L A LP PPPE
Sbjct: 176 PVALGCNL-FEGRPQLTAWRERVEAFLG--AELCQEAHNPIMSVLGQAAKKTLPVPPPE 231
>sp|Q09X27|RPOC2_MORIN DNA-directed RNA polymerase subunit beta'' OS=Morus indica GN=rpoC2
PE=3 SV=1
Length = 1389
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 29 NGLLNFFFKFNYVRKGTKKVKAQGIGVH---KPEEIEEFGK-NDLKVLADMLGDKAFFFG 84
N +L +F Y RKG+ K IG+H K E++ E+G + K D+ FF
Sbjct: 617 NSILAYFDDLQYRRKGSGITKYGAIGLHSILKKEDLIEYGGVKEFKPKYQTKVDQFFFIP 676
Query: 85 EE 86
EE
Sbjct: 677 EE 678
>sp|Q974T8|DPO4_SULTO DNA polymerase IV OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=dbh PE=3 SV=2
Length = 351
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 47 KVKAQGIGVHKPEEIEEFGKN 67
+VK G+GV KPEEIEEF K+
Sbjct: 157 RVKPNGLGVVKPEEIEEFIKS 177
>sp|Q9C8M3|GSTUS_ARATH Glutathione S-transferase U28 OS=Arabidopsis thaliana GN=GSTU28
PE=3 SV=1
Length = 224
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 28 PNGLLNFFFKFNYVRKGTKKVKAQGIGVHKPEEIEEFGKND----LKVLADMLGDKAFFF 83
P F +Y K + I +K E +E GK + LKVL LGDK++F
Sbjct: 92 PQSRATARFWADYADKTISFEGGRKIWGNKKGEEQEKGKKEFLESLKVLEAELGDKSYFG 151
Query: 84 GEEPTTLDVVAFAHIAQIYCIDKDVEFPL 112
GE +D+ + Y ++K +F +
Sbjct: 152 GETFGYVDITLVPFYSWFYALEKCGDFSV 180
>sp|A3GG12|CLU_PICST Clustered mitochondria protein homolog OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=CLU1 PE=3 SV=2
Length = 1242
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 143 NNLDLNAHLPKPPPEEKEEKEKEEKKEGDKEAE 175
N L LNA + EEK+ EK EK E D+++E
Sbjct: 151 NELTLNAVKERENQEEKDRNEKSEKDEKDEKSE 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,759,977
Number of Sequences: 539616
Number of extensions: 3517328
Number of successful extensions: 32513
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 30573
Number of HSP's gapped (non-prelim): 1609
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)