RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2680
         (178 letters)



>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
           {Crab-eating macaque (Macaca fascicularis) [TaxId:
           9541]}
          Length = 161

 Score = 29.8 bits (67), Expect = 0.11
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 72  LADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLRDYLETTHSNLVAHINRIK 131
           +A +  D+ F  G++P   D+  +  +  +  +D   +          H+++     R++
Sbjct: 103 VAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDL-------MQHTHIQPWYLRVE 155

Query: 132 N 132
            
Sbjct: 156 R 156


>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1
           (clic1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 149

 Score = 29.3 bits (65), Expect = 0.17
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 8/78 (10%)

Query: 56  HKPEEIEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFAHIAQIYCIDKDVEFPLRDY 115
             PE ++E          + +  + F  G E T  D         ++ +    +      
Sbjct: 56  PLPEGVDE-----TSAEDEGVSQRKFLDGNELTLADCNLLPK---LHIVQVVCKKYRGFT 107

Query: 116 LETTHSNLVAHINRIKNR 133
           +      +  +++    R
Sbjct: 108 IPEAFRGVHRYLSNAYAR 125


>d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 108

 Score = 24.2 bits (52), Expect = 5.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 61  IEEFGKNDLKVLADMLGDKAFFFGEEPTTLDVVAFA 96
           I+ F  N+   LAD L D   F   EP  L  V  A
Sbjct: 72  IDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIA 107


>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli
           [TaxId: 562]}
          Length = 149

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 135 FPDWDDICNNL-DLNAHLPKPPPEEKEEKEK 164
              W+D    L  L   LP  P E K + ++
Sbjct: 27  LTQWEDKYRQLIMLGKQLPALPDELKAQAKE 57


>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
          Length = 144

 Score = 24.4 bits (53), Expect = 6.7
 Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 135 FPDWDDICNNL-DLNAHLPKPPPEEKEEKEK 164
             +W++    + +L   LP+   E++  +  
Sbjct: 15  CANWEEKYLYIIELGQRLPELRDEDRSPQNS 45


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 24.3 bits (53), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 129 RIKNRCFPDWDDICNNLDLNAHLPKPPPEEK 159
           ++K R  P+  DI  NL  +A +P  P   K
Sbjct: 164 KLKRRVNPE--DIVLNLSKDAPVPPAPEGHK 192


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 714,778
Number of extensions: 33928
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 14
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)