BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2681
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 81 GMFGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
M GL P IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+
Sbjct: 885 SMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL 944
Query: 140 KNYQGGVILVSHDERLIRETDCELWALE 167
K ++GGVI+++H + E+WA++
Sbjct: 945 KEFEGGVIIITHSAEFTKNLTEEVWAVK 972
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E + +L FG +PI LSGG K ++ALA L N DIL+LDEPTN+LD ++
Sbjct: 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 134 ALAEAIKNYQGGVILVSHDERLIRETDCE-LWALEKKNIRKFNGDFDDYREK 184
L + I +SHD + + CE + E +RK+ G+F ++ +K
Sbjct: 586 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKK 636
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 3 QMCLKLRIAVL--QGLRNPLSFIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP--D 58
Q L RIAV+ G GEL P GE+ RI QH+ H+ D
Sbjct: 695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLD 754
Query: 59 DTPCEYLMKLF 69
TP EY+ F
Sbjct: 755 KTPSEYIQWRF 765
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153
IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++GGVI+++H
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 154 RLIRETDCELWALE 167
+ E+WA++
Sbjct: 953 EFTKNLTEEVWAVK 966
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E + +L FG PI LSGG K ++ALA L N DIL+LDEPTN+LD ++
Sbjct: 520 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA 579
Query: 134 ALAEAIKNYQGGVILVSHDERLIRETDCE-LWALEKKNIRKFNGDFDDYREK 184
L + I +SHD + + CE + E +RK+ G+F ++ +K
Sbjct: 580 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKK 630
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 3 QMCLKLRIAVL--QGLRNPLSFIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP--D 58
Q L RIAV+ G GEL P GE+ RI QH+ H+ D
Sbjct: 689 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLD 748
Query: 59 DTPCEYLMKLF 69
TP EY+ F
Sbjct: 749 KTPSEYIQWRF 759
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153
IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++GGVI+++H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 154 RLIRETDCELWALE 167
+ E+WA++
Sbjct: 959 EFTKNLTEEVWAVK 972
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E + +L FG PI LSGG K ++ALA L N DIL+LDEPTN+LD ++
Sbjct: 526 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 134 ALAEAIKNYQGGVILVSHDERLIRETDCE-LWALEKKNIRKFNGDFDDYREK 184
L + I +SHD + + CE + E +RK+ G+F ++ +K
Sbjct: 586 WLVNYLNTCGITSITISHDSVFL-DNVCEYIINYEGLKLRKYKGNFTEFVKK 636
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 3 QMCLKLRIAVL--QGLRNPLSFIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP--D 58
Q L RIAV+ G GEL P GE+ RI QH+ H+ D
Sbjct: 695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLD 754
Query: 59 DTPCEYLMKLF 69
TP EY+ F
Sbjct: 755 KTPSEYIQWRF 765
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 34 GELRKSPRLR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP 86
GE +K +R IG Q+ + F + E + N P ++ + GL
Sbjct: 68 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 127
Query: 87 --SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 144
S+ +P LSGG+K RVA+A + ++ PDILILDEP LD E L ++ ++
Sbjct: 128 FDSFKDRVPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 145 ---GVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDYREK 184
VIL+SHD E +I D + LEK + F+G ++ EK
Sbjct: 187 LGKTVILISHDIETVINHVD-RVVVLEKGK-KVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 34 GELRKSPRLR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP 86
GE +K +R IG Q+ + F + E + N P ++ + GL
Sbjct: 70 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 129
Query: 87 --SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 144
S+ +P LSGG+K RVA+A + ++ PDILILDEP LD E L ++ ++
Sbjct: 130 FDSFKDRVPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 188
Query: 145 ---GVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDYREK 184
VIL+SHD E +I D + LEK + F+G ++ EK
Sbjct: 189 LGKTVILISHDIETVINHVD-RVVVLEKGK-KVFDGTRMEFLEK 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + NP IL+LDE T+ LD ES + EA+ + G I+++H
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277
Query: 155 LIRETDC 161
+ DC
Sbjct: 1278 TVMNADC 1284
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + NP IL+LDE T+ LD ES + +A+ G I+++H
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614
Query: 155 LIRETD 160
IR D
Sbjct: 615 TIRNAD 620
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 54 HLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARV 105
+LFP T + MK+ P EK+ + L GL AH P LSGGQ RV
Sbjct: 110 NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRV 168
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERLIRET 159
A+A P I++ DEPT+ LD E + + +K N +++V+H+ RE
Sbjct: 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV 225
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 54 HLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARV 105
+LFP T + MK+ P EK+ + L GL AH P LSGGQ RV
Sbjct: 89 NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRV 147
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERLIRET 159
A+A P I++ DEPT+ LD E + + +K N +++V+H+ RE
Sbjct: 148 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV 204
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
LSGGQK R+++A + LNNP ILILDE T+ LD+ES + EA+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + NP IL+LDE T+ LD ES + A+ + G I+++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 155 LIRETDC 161
+R D
Sbjct: 587 TVRNADV 593
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + P IL+LDE T+ LD ES + EA+ + G I+++H
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 155 LIRETD 160
I+ D
Sbjct: 1232 TIQNAD 1237
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + NP IL+LDE T+ LD ES + A+ + G I+++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 155 LIRETDC 161
+R D
Sbjct: 587 TVRNADV 593
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + P IL+LDE T+ LD ES + EA+ + G I+++H
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 155 LIRETD 160
I+ D
Sbjct: 1232 TIQNAD 1237
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVIL--VS 150
R+LSGGQ+ RVALA + +P +L+LDEP +NLD D+ +K Q GV L VS
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 151 HD 152
HD
Sbjct: 199 HD 200
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 30 TPNKGELRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LG 81
T ++ EL K+ R +IG QH S +F + ++L N P ++ +R+ L
Sbjct: 71 TLSESELTKARR-QIGMIFQHFNLLSSRTVFGN---VALPLELDNTPKDEVKRRVTELLS 126
Query: 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 140
+ GL + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++ E +K
Sbjct: 127 LVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 141 -NYQGG--VILVSHDERLI-RETDC 161
N + G ++L++H+ ++ R DC
Sbjct: 186 INRRLGLTILLITHEMDVVKRICDC 210
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---ID 133
++ L + GL A P+ +LSGGQK R+A+A + + L LDEP + LD S I
Sbjct: 122 KKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF 180
Query: 134 ALAEAIKNYQGGVILVSHDERLIRETD 160
+ E++KN G+ILV+H+ + + D
Sbjct: 181 QVLESLKNEGKGIILVTHELEYLDDMD 207
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVSHD 152
LSGGQ+ RVA+A NNP I++ DEPT LD ++ + + + +K N + G V++V+HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
Query: 153 -------ERLIRETDCELWALEK 168
ER+I D E+ EK
Sbjct: 206 INVARFGERIIYLKDGEVEREEK 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134
+ R L L SYA+ P +LSGGQ+ RVALA P +L+ DEP +D +
Sbjct: 125 RVRELLRFMRLESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 135 LAEAIKNYQG--GV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK-----L 185
L ++ GV + V+HD+ E + L + N+ +F G ++ EK +
Sbjct: 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF-GTPEEVYEKPGTLFV 242
Query: 186 LTSLGEAMVYNPSV 199
+ +GE+ V+ +V
Sbjct: 243 ASFIGESNVWTRAV 256
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 30 TPNKGELRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LG 81
T ++ EL K+ R +IG QH S +F + ++L N P ++ +R+ L
Sbjct: 94 TLSESELTKARR-QIGXIFQHFNLLSSRTVFGN---VALPLELDNTPKDEVKRRVTELLS 149
Query: 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 140
+ GL + P +LSGGQK RVA+A +NP +L+ D+ T+ LD + ++ E +K
Sbjct: 150 LVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 141 -NYQGG--VILVSHDERLI-RETDC 161
N + G ++L++H+ ++ R DC
Sbjct: 209 INRRLGLTILLITHEXDVVKRICDC 233
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 202 TVKNAD-RIIVMEKGKI 217
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 201
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 202 TVKNAD-RIIVMEKGKI 217
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 200 TVKNAD-RIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 206 TVKNAD-RIIVMEKGKI 221
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 30 TPNKGELRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LG 81
T ++ EL K+ R +IG QH S +F + ++L N P ++ +R+ L
Sbjct: 94 TLSESELTKARR-QIGMIFQHFNLLSSRTVFGN---VALPLELDNTPKDEVKRRVTELLS 149
Query: 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 140
+ GL + P +LSGGQK RVA+A +NP +L+ D+ T+ LD + ++ E +K
Sbjct: 150 LVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 141 -NYQGG--VILVSHDERLI-RETDC 161
N + G ++L++H+ ++ R DC
Sbjct: 209 INRRLGLTILLITHEMDVVKRICDC 233
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A L NP IL+LDE T+ LD E+ + EA+ G V++++H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS 574
Query: 155 LIRETD 160
I+ +
Sbjct: 575 TIKNAN 580
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVSHD 152
LSGGQ+ RVA+A NNP I++ D+PT LD ++ + + + +K N + G V++V+HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 153 -------ERLIRETDCELWALEK 168
ER+I D E+ EK
Sbjct: 206 INVARFGERIIYLKDGEVEREEK 228
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A L NP IL+LDE T+ LD E+ + EA+ G V++++H
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543
Query: 155 LIRETD 160
I+ +
Sbjct: 544 TIKNAN 549
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVIL--VS 150
R+LSG Q+ RVALA + +P +L+LDEP +NLD D+ +K Q GV L VS
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 151 HD 152
HD
Sbjct: 199 HD 200
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 152
LSGGQ+ RVA+A + PD+L++DEP +NLD + A+ IK Q + I V+HD
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 153 E 153
+
Sbjct: 202 Q 202
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 152
LSGGQ+ RVA+A + PD+L++DEP +NLD + A+ IK Q + I V+HD
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 153 E 153
+
Sbjct: 203 Q 203
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI D+ T+ LD ES + + G VI+++H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 206 TVKNAD-RIIVMEKGKI 221
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149
+ DLSGG+ RVA+A L + DI +LDEP+ LD+E A++ AI++ + ++V
Sbjct: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 150 SHDERLIRETDCELWALE 167
HD +I L E
Sbjct: 515 EHDVLMIDYVSDRLIVFE 532
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVS 150
+ LSGG+ RVA+A L DEP++ LDI +A I+ N V++V
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
Query: 151 HD 152
HD
Sbjct: 272 HD 273
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149
+ DLSGG+ RVA+A L + DI +LDEP+ LD+E A++ AI++ + ++V
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 150 SHDERLIRETDCELWALE 167
HD +I L E
Sbjct: 529 EHDVLMIDYVSDRLIVFE 546
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVS 150
+ LSGG+ RVA+A L DEP++ LDI +A I+ N V++V
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
Query: 151 HD 152
HD
Sbjct: 286 HD 287
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
LSGGQ+ RVA+A L + +LILDE T+ LD ES A+ A+ Q V++++H
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 154 RLIRETD 160
I + D
Sbjct: 540 STIEQAD 546
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVSHD 152
LSGGQ+ RVA+A NNP I++ D+PT LD ++ + + + +K N + G V++V+HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 153 -------ERLIRETDCELWALEK 168
ER+I D E+ EK
Sbjct: 206 INVARFGERIIYLKDGEVEREEK 228
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
+SGGQ+ R+A+A L NP IL+LDE T +LD ES + +A+ + G ++++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 155 LIRETDCELWALEKKNI 171
I + D +++ +EK I
Sbjct: 200 TIVDAD-KIYFIEKGQI 215
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 74 EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
EK+ +L M L A ++ P++ LSGG K RV +A L +P +LILDEPT+ LD+ +
Sbjct: 131 EKASEKLRMVRLNPEAVLNSYPLQ-LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLT 189
Query: 132 ----IDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185
I L E K + +I V+HD + E ++ + N+ ++N F ++ L
Sbjct: 190 QAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPL 247
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149
+ +LSGG+ RVA+A L + DI +LDEP+ LD+E A++ AI++ + ++V
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 150 SHD 152
HD
Sbjct: 459 EHD 461
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVS 150
I+ LSGG+ RVA+A L N DEP++ LDI A AI+ V++V
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 151 HD 152
HD
Sbjct: 216 HD 217
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
++ R + GL + P R+LSGGQ+ RVAL + P + ++DEP +NLD +
Sbjct: 118 QRVREVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 134 ALAEAIKNYQG--GV--ILVSHDE 153
+ +K Q GV I V+HD+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQ 200
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A L + ILILDE T+ LD ES A+ A+ Q ++++H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 155 LIRETD 160
I + D
Sbjct: 541 TIEQAD 546
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNYQGG--VILVSHD 152
+LSGG++ RVA+A N P +L DEPT NLD + + + +K +GG +++V+H+
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
Query: 153 ERL 155
L
Sbjct: 200 REL 202
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGGVILVSH 151
LSGGQ+ VALA + P +LILD+ T+ LD S L E+ + Y V+L++
Sbjct: 154 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ 213
Query: 152 DERLIRETDCELWALEKKNIRKFNGDFDDYREK 184
L+ + D L+ LE IR+ G EK
Sbjct: 214 HLSLVEQADHILF-LEGGAIRE-GGTHQQLMEK 244
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A L + ILILDE T+ LD ES A+ A+ Q ++++H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 155 LIRETD 160
I + D
Sbjct: 541 TIEKAD 546
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI- 132
E++ + L G+ A LSGGQ+ RV++A PD+L+ DEPT+ LD E +
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 133 ------DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 171
LAE K +++V+H+ R + L + I
Sbjct: 191 EVLRIMQQLAEEGKT----MVVVTHEMGFARHVSSHVIFLHQGKI 231
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVIL 148
P LS GQK RVA+A + + P +LILDEPT LD E + L E K +I+
Sbjct: 140 PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 149 VSHD 152
+HD
Sbjct: 200 ATHD 203
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 152
LSGGQ+ RVALA + P +L+ DEP +NLD + IK+ Q + + V+HD
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 153 E 153
+
Sbjct: 194 Q 194
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 152
LSGGQ+ RVA+A + P++L+LDEP +NLD +E L K + V+HD
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 153 E 153
+
Sbjct: 194 Q 194
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-SIDALAEAIK-NYQGGV--ILVS 150
R+LSGGQ+ RVAL + P + + DEP +NLD + + AE K Q GV I V+
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVT 200
Query: 151 HDE 153
HD+
Sbjct: 201 HDQ 203
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
DLS GQ+ +A+ L NP ILILDE T+N+D ++ ++ A+ G I+++H
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRL 550
Query: 154 RLIRETDC 161
I+ D
Sbjct: 551 NTIKNADL 558
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGG++ RVALA + NP IL+LDEP + LD + + E + K + V+ ++HD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 153 E 153
+
Sbjct: 188 Q 188
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDE 153
SGG+K R + ++ + P++ ILDE + LDI+++ +A+ + + + G I+V+H +
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 154 RLI 156
R++
Sbjct: 206 RIL 208
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDE 153
SGG+K R + ++ + P++ ILDE + LDI+++ +A+ + + + G I+V+H +
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 154 RLI 156
R++
Sbjct: 225 RIL 227
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 152
LSGG++ RVALA + P +L+LDEP + +D+++ L E ++ Q ++ V+HD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E R Q+G GL LSGG+K RVA+A L P I++LDE T+ LD +
Sbjct: 178 EGYRTQVGERGLK----------LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 134 ALAEAIKNYQGG--VILVSH 151
A+ ++ I+V+H
Sbjct: 228 AIQASLAKVCANRTTIVVAH 247
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
LSGG++ R+A+A L +P I+I DE T++LD ++ +A+++ + +I+++H
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ LSGGQ+ RVA+ + P + +LDEP +NLD
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVS 150
+ LSGGQ+ RVA+ + P + +LDEP +NLD ++ ++ K +I V+
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 151 HDE 153
HD+
Sbjct: 192 HDQ 194
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
R+ SGGQK R+++A + P +LILD+ T+++D + + + +K Y G
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV-----ILVS 150
+LSGGQK RV+LA +N DI + D+P + +D + E + +G + ILV+
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 151 HDERLIRETDC 161
H + + D
Sbjct: 187 HSMSYLPQVDV 197
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 24/114 (21%)
Query: 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALA 108
P TP + + L ++K+R +L L A + + D LSGG+ RV LA
Sbjct: 85 PFATPVWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138
Query: 109 ELTLN-----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 152
+ L NP +L+LD+P N+LD+ ++D + A+ +++ SHD
Sbjct: 139 AVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDE 153
SGG+K R + +L + P +LDE + LDI+++ +A + +G G ++++H +
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 154 RLI 156
R++
Sbjct: 204 RIL 206
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 24/114 (21%)
Query: 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALA 108
P TP + + L ++K+R +L L A + + D LSGG+ RV LA
Sbjct: 85 PFATPVWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138
Query: 109 ELTLN-----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 152
+ L NP +L+LDEP N+LD+ ++D + A+ ++ SHD
Sbjct: 139 AVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHD 192
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVS 150
+ LSGGQ+ RVA+ + P + +LD+P +NLD ++ ++ K +I V+
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 151 HDE 153
HD+
Sbjct: 192 HDQ 194
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 22/139 (15%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFP--DDTPCEYL-------MKLFNLPYEKSR 77
GE+T ++G + +P +I + + +FP D T +YL + + +E+
Sbjct: 316 GEITADEGSV--TPEKQILSYKP---QRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370
Query: 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
++L + L + DLSGG+ ++ +A D+ +LD+P++ LD+E +A+
Sbjct: 371 KRLNLHRLLES----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426
Query: 138 AIKNY----QGGVILVSHD 152
AIK + ++ HD
Sbjct: 427 AIKRVTRERKAVTFIIDHD 445
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHD 152
LSGG R+ +A L D+ I D+P++ LD+ +A+AI+ VI+V HD
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
LSGGQ+AR++LA + D+ +LD P LD+ + + + E+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
LSGGQ+AR++LA + D+ +LD P LD+ + + + E+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
LSGGQ+AR++LA + D+ +LD P LD+ + + + E+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 97 LSGGQKARVALAELTLNNPD--ILILDEPTNNL---DIESIDALAEAIKNYQGGVILVSH 151
LSGG+ R+ LA + I +LDEPT L D E + + +++ VI+V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 152 DERLIRETD 160
DE +IR D
Sbjct: 525 DEEVIRNAD 533
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 58 DDTPCEYLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTLNNP 115
D T E L N+P K Q L GL P LSGG+ R+ LA EL +
Sbjct: 766 DMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDT 825
Query: 116 --DILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERLIRETD 160
+ ILDEPT L E + L E + + VI++ H+ +I+ D
Sbjct: 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNAD 875
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
LSGGQ+AR++LA + D+ +LD P LD+ + + + E+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 175
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 81 GMFGLPSYAHTIPIRDLSGGQKARVA------LAELTLNNPDILILDEPTNNLDIESIDA 134
G F + + P R LSGG++A ++ LAE+ D +DE ++LD E+ +
Sbjct: 264 GGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEK 323
Query: 135 LAEAIKNYQ---GGVILVSHDERLIRETDCEL 163
+A +K + ++ ++HD D +L
Sbjct: 324 IASVLKELERLNKVIVFITHDREFSEAFDRKL 355
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
LSGGQ+AR++LA + D+ +LD P LD+ + + + E+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 146 --VILVSHDERL 155
VILVSHDE L
Sbjct: 114 PQVILVSHDEEL 125
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 162
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 24/114 (21%)
Query: 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALA 108
P TP + + L ++K+R +L L A + + D LSGG+ RV LA
Sbjct: 85 PFATPVWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138
Query: 109 ELTLN-----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 152
+ L NP +L+LDEP N+LD+ ++D + A+ ++ SHD
Sbjct: 139 AVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHD 192
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 81 GMFGLPSYAHTIPIRDLSGGQKARVA------LAELTLNNPDILILDEPTNNLDIESIDA 134
G F + + P R LSGG++A ++ LAE+ D +DE ++LD E+ +
Sbjct: 264 GGFIIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEK 323
Query: 135 LAEAIKNYQ---GGVILVSHDERLIRETDCEL 163
+A +K + ++ ++HD D +L
Sbjct: 324 IASVLKELERLNKVIVFITHDREFSEAFDRKL 355
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 80 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 139
Query: 146 --VILVSHDERL 155
VILVSHDE L
Sbjct: 140 PQVILVSHDEEL 151
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 304
Query: 146 --VILVSHDERL 155
VILVSHDE L
Sbjct: 305 PQVILVSHDEEL 316
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 85 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 144
Query: 146 --VILVSHDERL 155
VILVSHDE L
Sbjct: 145 PQVILVSHDEEL 156
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 265 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 324
Query: 146 --VILVSHDERL 155
VILVSHDE L
Sbjct: 325 PQVILVSHDEEL 336
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ VALA + P +LILD+ T+ LD
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDQATSALD 188
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 24/114 (21%)
Query: 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALA 108
P TP + + L ++K+R +L L A + + D LSGG+ RV LA
Sbjct: 85 PFATPVWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138
Query: 109 ELTLN-----NP--DILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD 152
+ L NP +L+LD+P +LD+ ++D + A+ +++ SHD
Sbjct: 139 AVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LS G+K RV +A P +LILDEP LD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ VALA + P +LILD T+ LD
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LS G K + LA L+ IL+LDEP+ +LD + + +K ++ + R+
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 157 RETDC-ELWALEKKNIRKFNGDFDDY 181
+C + +E+ +R+++ + Y
Sbjct: 216 AMLECDQFLVIEENKVRQYDSILELY 241
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ L GG++ R+A++ +LILDEPT LD E L ++ Y
Sbjct: 50 PLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 109
Query: 146 --VILVSHDERL 155
VILVSHDE L
Sbjct: 110 PQVILVSHDEEL 121
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVS 150
I LSGG+ R A+ + D+ + DEP++ LD++ A+ I++ VI V
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 151 HD 152
HD
Sbjct: 279 HD 280
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 94 IRDLSGGQKARVALAELTLNNP-DILILDEPTNNLDIESIDALAEAIKNY----QGGVIL 148
++ LSGG+ RVA+ L L P DI ++DEP+ LD E ++ I+ + + +
Sbjct: 465 VQHLSGGELQRVAIV-LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
Query: 149 VSHD 152
V HD
Sbjct: 524 VEHD 527
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
LS GQ V + + P+I+ LDEP N+D ++ IK Y ILV+H+
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHE 184
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSH 151
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K + +G ILVS
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203
Query: 152 DERLIRETDCELWALEKKNIRKFNGDFDDYREK 184
L E C+ AL G ++ +E+
Sbjct: 204 HNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 93 PIRDLSGGQKARVALA-EL--TLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGG 145
P LSGG+ RV LA EL N + ILDEPT L ++ I D L + N
Sbjct: 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-T 900
Query: 146 VILVSHDERLIRETD 160
V+++ H+ +I+ D
Sbjct: 901 VLVIEHNLDVIKTAD 915
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQGGVILVSH 151
LSGGQ+ + +A + +++LDEPT+ LD+ + D L + ++ V+ +H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 152 DERLIRETDCELWALEKKNIR 172
+ + L K+N +
Sbjct: 188 QPNQVVAIANKTLLLNKQNFK 208
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 93 PIRDLSGGQKARVALA-EL--TLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGG 145
P LSGG+ RV LA EL N + ILDEPT L ++ I D L + N
Sbjct: 540 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-T 598
Query: 146 VILVSHDERLIRETD 160
V+++ H+ +I+ D
Sbjct: 599 VLVIEHNLDVIKTAD 613
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 93 PIRDLSGGQKARVALA-ELTLNNP--DILILDEPTNNLDIESIDALAEAIK---NYQGGV 146
P LSGG+ RV LA EL + + ILDEPT L + I L I + V
Sbjct: 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTV 919
Query: 147 ILVSHDERLIRETDCELWALE 167
I++ H+ +I+ +D W ++
Sbjct: 920 IVIEHNLDVIKTSD---WIID 937
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 93 PIRDLSGGQKARVALA-EL--TLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGG 145
P LSGG+ RV LA EL N + ILDEPT L ++ I D L + N
Sbjct: 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-T 900
Query: 146 VILVSHDERLIRETD 160
V+++ H+ +I+ D
Sbjct: 901 VLVIEHNLDVIKTAD 915
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 97 LSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSH 151
LS G+ R+ LA +N + +LDEP+ L +AL A++N + G + +V H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 152 DERLIRETD 160
D +IR D
Sbjct: 440 DLDVIRRAD 448
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 91 TIPIRDLSGGQKARVALA-------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
+ I +LSGG++ VAL+ L N + +ILDEPT LD LAE + +
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK 334
Query: 144 G--GVILVSHDERLIRETDCELWALEKKNIRK 173
+I+++H L D + + N+ K
Sbjct: 335 SIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 95 RDLSGGQKARVALAELTLN------NPDILILDEPTNNLDI 129
R LSGG++ RV LA + P L LDEPT+ LD+
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LS GQ+A+++LA + D+ +LD P LD+
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LS GQ+A+++LA + D+ +LD P LD+
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
L+ GQ+ VALA + P +LILD T+ LD
Sbjct: 156 QLAVGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 81 GMFGLPSYAHTIPIRDLSGGQKARVA------LAELTLNNPDILILDEPTNNLDIESIDA 134
G F + + P R LSGG++A ++ LAE+ D +DE ++L E+ +
Sbjct: 281 GGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEK 340
Query: 135 LAEAIK 140
+A +K
Sbjct: 341 IASVLK 346
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEP 123
+LSGGQ V + + NP ++++DEP
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEP 123
+LSGGQ V + + NP ++++DEP
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEP 123
+LSGGQ V + + NP ++++D+P
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|3N70|A Chain A, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|B Chain B, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|C Chain C, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|D Chain D, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|E Chain E, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|F Chain F, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|G Chain G, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
pdb|3N70|H Chain H, The Crystal Structure Of The P-Loop Ntpase Domain Of The
Sigma-54 Transport Activator From E. Coli To 2.8a
Length = 145
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 123 PTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKF 174
P N + ALA QGG +++SH E L RE L L+ + R F
Sbjct: 62 PDNAPQLNDFIALA------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPF 107
>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
pdb|3CQ4|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
Length = 376
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 105 VALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNYQGGVILV 149
VAL E+ PDI+ + P N D+ S+D + E I N G+++V
Sbjct: 152 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV-ERIINVAPGIVIV 196
>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
Length = 369
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 105 VALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNYQGGVILV 149
VAL E+ PDI+ + P N D+ S+D + E I N G+++V
Sbjct: 155 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV-ERIINVAPGIVIV 199
>pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
pdb|3CQ6|E Chain E, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum Holo-Form (Plp Covalently Bound )
Length = 369
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 105 VALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNYQGGVILV 149
VAL E+ PDI+ + P N D+ S+D + E I N G+++V
Sbjct: 155 VALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV-ERIINVAPGIVIV 199
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE----AIKNYQGGVILVSH 151
+LSGGQ+ R ALA +P++++LDEP + LD + + E A++ + VSH
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197
Query: 152 DERLIRETDCELWALEKKNIRKFNGDFDDYRE----KLLTSLGEAMVYNPSVAA 201
D + + +++ I + + YR+ +GE +V+ ++ A
Sbjct: 198 DREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNA 251
>pdb|3SQN|A Chain A, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
pdb|3SQN|B Chain B, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
Length = 485
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 105 VALAELTLNNPDILILDEPTNNLDI 129
V L++LTLN DI+I + P ++LD+
Sbjct: 435 VELSQLTLNEADIIISNFPLDHLDL 459
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 35 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-RQLGMFGLPSYAHTIP 93
EL L G +++ E + D E++ LF P K R +QLG
Sbjct: 95 ELTVYENLXXGAYNRKDKEGIKRD---LEWIFSLF--PRLKERLKQLG------------ 137
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSH 151
LSGG++ +A+ + P +L DEP+ L + + E I+ N +G IL+
Sbjct: 138 -GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 152 DERL 155
L
Sbjct: 197 QNAL 200
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 26.9 bits (58), Expect = 8.2, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 50 HSGEHLF----PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG----GQ 101
HSGE F P+D E KLF L Y + G+F + A P + SG G+
Sbjct: 398 HSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGR 457
Query: 102 KARVALAELTLN---NPDI 117
A A L NP+I
Sbjct: 458 IAAKAAVRFILEQKPNPEI 476
>pdb|3BE5|A Chain A, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|B Chain B, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|C Chain C, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|D Chain D, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|A Chain A, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|B Chain B, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|C Chain C, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|D Chain D, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
Length = 297
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 103 ARVALAELTLNNPDILILDEPTNNLDIESIDALAE--AIKNYQGGVILVSHDERLIRETD 160
A + + + PD LI+ EPT N IE ++ +A +I + +GG + + T
Sbjct: 79 ADIDIEAIVAAKPD-LIITEPTRNTPIERLEKIAPTVSIDHLKGGAPEIYRKLAELTGTQ 137
Query: 161 CELWALEKKNIRKFNG 176
+L LE++ + N
Sbjct: 138 SQLAILERRYQAQINA 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,357,222
Number of Sequences: 62578
Number of extensions: 274065
Number of successful extensions: 744
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 141
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)