Query psy2681
Match_columns 211
No_of_seqs 268 out of 1455
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:27:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4E-42 8.8E-47 274.6 16.1 175 3-181 24-223 (240)
2 COG1127 Ttg2A ABC-type transpo 100.0 2.6E-39 5.6E-44 262.0 16.4 177 4-183 31-235 (263)
3 COG1116 TauB ABC-type nitrate/ 100.0 2.3E-39 5E-44 264.5 15.1 162 4-169 26-207 (248)
4 COG1135 AbcC ABC-type metal io 100.0 4.1E-39 8.9E-44 269.0 14.5 172 4-180 29-228 (339)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.4E-38 7.4E-43 260.1 17.5 186 2-191 25-236 (254)
6 COG1125 OpuBA ABC-type proline 100.0 1.4E-38 3.1E-43 259.5 13.9 169 4-175 24-218 (309)
7 COG3638 ABC-type phosphate/pho 100.0 8.4E-39 1.8E-43 258.4 12.4 186 2-192 25-246 (258)
8 COG1124 DppF ABC-type dipeptid 100.0 4.7E-38 1E-42 255.2 16.6 171 4-174 30-223 (252)
9 COG1120 FepC ABC-type cobalami 100.0 2.4E-38 5.2E-43 262.1 15.0 185 4-193 25-239 (258)
10 COG1136 SalX ABC-type antimicr 100.0 3.2E-37 7E-42 250.9 17.2 165 3-171 27-220 (226)
11 COG1131 CcmA ABC-type multidru 100.0 7.5E-37 1.6E-41 260.2 18.7 175 4-183 28-226 (293)
12 COG1118 CysA ABC-type sulfate/ 100.0 3.6E-37 7.7E-42 257.0 15.5 174 4-181 25-225 (345)
13 COG1122 CbiO ABC-type cobalt t 100.0 8.4E-37 1.8E-41 251.6 16.3 176 3-182 26-227 (235)
14 PRK13537 nodulation ABC transp 100.0 4.4E-36 9.5E-41 257.1 18.5 176 3-183 29-227 (306)
15 TIGR01188 drrA daunorubicin re 100.0 4.2E-36 9.2E-41 256.7 18.0 177 2-183 14-213 (302)
16 TIGR02314 ABC_MetN D-methionin 100.0 5.8E-36 1.3E-40 259.5 17.9 174 3-181 27-228 (343)
17 COG4175 ProV ABC-type proline/ 100.0 1.5E-36 3.2E-41 254.1 13.3 167 10-180 56-251 (386)
18 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-35 2.4E-40 245.3 18.3 175 2-181 21-224 (235)
19 COG3840 ThiQ ABC-type thiamine 100.0 1.6E-36 3.4E-41 236.7 12.3 177 2-182 20-218 (231)
20 PRK11650 ugpC glycerol-3-phosp 100.0 8.5E-36 1.9E-40 259.9 18.3 176 3-182 26-223 (356)
21 COG3842 PotA ABC-type spermidi 100.0 3.4E-36 7.4E-41 259.1 14.8 176 4-183 28-226 (352)
22 TIGR01186 proV glycine betaine 100.0 1.4E-35 3.1E-40 258.6 18.5 174 3-181 15-217 (363)
23 COG2884 FtsE Predicted ATPase 100.0 5.5E-36 1.2E-40 234.9 14.1 159 13-174 33-218 (223)
24 COG4555 NatA ABC-type Na+ tran 100.0 3.2E-36 7E-41 238.3 12.8 181 10-194 30-234 (245)
25 COG3839 MalK ABC-type sugar tr 100.0 4.1E-36 8.8E-41 257.4 14.1 170 7-181 29-221 (338)
26 TIGR00960 3a0501s02 Type II (G 100.0 8.5E-36 1.9E-40 242.9 15.1 166 3-171 25-216 (216)
27 PRK13536 nodulation factor exp 100.0 2.2E-35 4.7E-40 255.9 18.3 177 3-183 63-261 (340)
28 TIGR03265 PhnT2 putative 2-ami 100.0 2.4E-35 5.2E-40 256.8 18.3 176 3-182 26-223 (353)
29 PRK11432 fbpC ferric transport 100.0 2.9E-35 6.3E-40 256.1 18.6 176 3-182 28-225 (351)
30 TIGR01288 nodI ATP-binding ABC 100.0 4.2E-35 9.1E-40 250.7 18.4 176 3-182 26-223 (303)
31 cd03259 ABC_Carb_Solutes_like 100.0 3.1E-35 6.7E-40 239.2 16.7 167 3-173 22-211 (213)
32 cd03219 ABC_Mj1267_LivG_branch 100.0 6.2E-35 1.3E-39 240.8 18.0 174 3-181 22-230 (236)
33 cd03226 ABC_cobalt_CbiO_domain 100.0 6.2E-35 1.3E-39 236.2 17.5 167 3-172 22-205 (205)
34 cd03265 ABC_DrrA DrrA is the A 100.0 3.5E-35 7.6E-40 240.1 16.1 174 2-179 21-217 (220)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 6E-35 1.3E-39 255.0 18.5 176 3-182 27-227 (362)
36 PRK10851 sulfate/thiosulfate t 100.0 6.5E-35 1.4E-39 254.1 18.6 175 3-181 24-224 (353)
37 cd03256 ABC_PhnC_transporter A 100.0 7.9E-35 1.7E-39 240.7 18.0 177 3-183 23-234 (241)
38 TIGR03522 GldA_ABC_ATP gliding 100.0 1E-34 2.3E-39 248.0 19.2 177 3-183 24-221 (301)
39 PRK09452 potA putrescine/sperm 100.0 8.2E-35 1.8E-39 255.1 18.8 174 4-182 37-233 (375)
40 PRK11153 metN DL-methionine tr 100.0 9.2E-35 2E-39 252.5 18.6 174 3-181 27-228 (343)
41 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.8E-35 1.9E-39 237.7 17.4 167 3-173 26-214 (220)
42 PRK11000 maltose/maltodextrin 100.0 1E-34 2.2E-39 254.3 18.9 174 3-181 25-221 (369)
43 TIGR02315 ABC_phnC phosphonate 100.0 8.6E-35 1.9E-39 240.9 17.2 176 3-183 24-235 (243)
44 COG0488 Uup ATPase components 100.0 1.3E-34 2.7E-39 262.3 19.6 178 3-185 25-242 (530)
45 cd03268 ABC_BcrA_bacitracin_re 100.0 9.2E-35 2E-39 235.6 16.6 167 3-173 22-206 (208)
46 PRK11607 potG putrescine trans 100.0 1.3E-34 2.8E-39 254.0 18.8 176 3-182 41-238 (377)
47 cd03296 ABC_CysA_sulfate_impor 100.0 1.6E-34 3.6E-39 238.9 18.2 175 3-181 24-224 (239)
48 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-34 2.3E-39 235.7 16.5 169 2-173 19-209 (211)
49 TIGR03415 ABC_choXWV_ATP choli 100.0 1.2E-34 2.5E-39 254.2 17.7 175 2-181 45-252 (382)
50 PRK09536 btuD corrinoid ABC tr 100.0 1.4E-34 2.9E-39 255.4 18.2 183 3-190 25-236 (402)
51 cd03235 ABC_Metallic_Cations A 100.0 1.4E-34 3E-39 235.3 16.5 165 3-169 21-208 (213)
52 PRK10070 glycine betaine trans 100.0 2.6E-34 5.6E-39 253.5 19.4 174 3-181 50-252 (400)
53 PRK15079 oligopeptide ABC tran 100.0 1.8E-34 4E-39 249.4 18.0 176 3-180 43-248 (331)
54 cd03264 ABC_drug_resistance_li 100.0 1.9E-34 4.1E-39 234.2 16.8 166 3-173 22-209 (211)
55 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-34 3.1E-39 235.9 16.2 164 3-171 26-218 (218)
56 PRK11247 ssuB aliphatic sulfon 100.0 2.7E-34 5.8E-39 240.5 18.1 168 3-173 34-214 (257)
57 PRK11144 modC molybdate transp 100.0 2.8E-34 6.1E-39 250.2 18.9 175 3-182 20-217 (352)
58 cd03218 ABC_YhbG The ABC trans 100.0 3.4E-34 7.3E-39 235.8 17.8 176 2-181 21-220 (232)
59 cd03266 ABC_NatA_sodium_export 100.0 1.7E-34 3.8E-39 235.4 15.8 168 3-173 27-216 (218)
60 cd03301 ABC_MalK_N The N-termi 100.0 2.2E-34 4.9E-39 234.0 16.4 168 3-173 22-211 (213)
61 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.5E-34 9.7E-39 240.5 18.7 175 3-182 46-249 (269)
62 cd03258 ABC_MetN_methionine_tr 100.0 3.6E-34 7.7E-39 235.9 17.7 174 3-181 27-228 (233)
63 PRK11308 dppF dipeptide transp 100.0 3.6E-34 7.8E-39 247.2 18.3 176 3-180 37-241 (327)
64 PRK15064 ABC transporter ATP-b 100.0 6.2E-34 1.3E-38 260.0 20.8 179 3-183 341-525 (530)
65 cd03269 ABC_putative_ATPase Th 100.0 2.6E-34 5.6E-39 233.3 16.3 168 3-173 22-208 (210)
66 PRK10636 putative ABC transpor 100.0 3.9E-34 8.3E-39 266.2 19.5 180 3-183 334-517 (638)
67 TIGR02673 FtsE cell division A 100.0 1.8E-34 3.8E-39 234.8 15.1 164 3-170 24-214 (214)
68 PRK11831 putative ABC transpor 100.0 5E-34 1.1E-38 240.2 18.2 176 3-182 29-232 (269)
69 PRK13651 cobalt transporter AT 100.0 3.8E-34 8.3E-39 245.0 17.6 177 2-181 28-252 (305)
70 PRK13637 cbiO cobalt transport 100.0 4.9E-34 1.1E-38 242.4 18.1 177 3-182 29-233 (287)
71 cd03263 ABC_subfamily_A The AB 100.0 2.8E-34 6E-39 234.5 15.6 174 2-179 23-217 (220)
72 PRK11147 ABC transporter ATPas 100.0 6.1E-34 1.3E-38 264.9 19.9 178 3-183 341-528 (635)
73 PRK10771 thiQ thiamine transpo 100.0 8.9E-34 1.9E-38 233.6 18.5 176 3-183 21-219 (232)
74 PRK13647 cbiO cobalt transport 100.0 3.6E-34 7.8E-39 241.7 16.4 177 2-181 26-225 (274)
75 PRK15064 ABC transporter ATP-b 100.0 9.1E-34 2E-38 258.9 20.1 179 2-182 22-241 (530)
76 cd03297 ABC_ModC_molybdenum_tr 100.0 6.2E-34 1.3E-38 231.8 17.0 162 8-173 24-212 (214)
77 cd03225 ABC_cobalt_CbiO_domain 100.0 4E-34 8.6E-39 232.2 15.8 165 3-170 23-211 (211)
78 PRK11264 putative amino-acid A 100.0 1.3E-33 2.8E-38 234.8 19.1 174 3-181 25-231 (250)
79 TIGR02142 modC_ABC molybdenum 100.0 7.2E-34 1.6E-38 247.9 18.3 175 3-182 19-220 (354)
80 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.1E-34 1.3E-38 236.0 17.0 174 3-181 23-223 (242)
81 cd03292 ABC_FtsE_transporter F 100.0 3E-34 6.5E-39 233.3 14.8 166 3-171 23-214 (214)
82 PRK10619 histidine/lysine/argi 100.0 8.4E-34 1.8E-38 237.1 17.9 176 3-181 27-239 (257)
83 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-33 2.5E-38 234.1 18.4 176 3-182 24-230 (242)
84 PRK09493 glnQ glutamine ABC tr 100.0 8.4E-34 1.8E-38 234.8 17.4 175 3-182 23-224 (240)
85 PRK13643 cbiO cobalt transport 100.0 8E-34 1.7E-38 241.2 17.7 177 3-182 28-232 (288)
86 PRK10908 cell division protein 100.0 9.9E-34 2.1E-38 231.8 17.6 166 3-172 24-216 (222)
87 PRK10895 lipopolysaccharide AB 100.0 9E-34 1.9E-38 234.7 17.5 176 2-182 24-225 (241)
88 cd03224 ABC_TM1139_LivF_branch 100.0 7.3E-34 1.6E-38 232.2 16.7 175 3-181 22-219 (222)
89 COG4148 ModC ABC-type molybdat 100.0 8.6E-35 1.9E-39 240.0 11.2 164 13-180 29-215 (352)
90 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-33 2.2E-38 233.8 17.6 175 2-182 22-220 (236)
91 TIGR02211 LolD_lipo_ex lipopro 100.0 1.2E-33 2.6E-38 230.9 17.6 166 3-172 27-220 (221)
92 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-33 6E-38 256.9 22.0 187 3-191 344-539 (552)
93 COG0488 Uup ATPase components 100.0 9.5E-34 2.1E-38 256.6 18.6 178 4-184 345-526 (530)
94 PRK13634 cbiO cobalt transport 100.0 1E-33 2.2E-38 240.8 17.7 176 3-181 29-233 (290)
95 TIGR01187 potA spermidine/putr 100.0 8.3E-34 1.8E-38 244.9 17.2 161 18-182 8-189 (325)
96 TIGR03410 urea_trans_UrtE urea 100.0 1.2E-33 2.5E-38 232.4 17.1 181 3-187 22-225 (230)
97 TIGR01277 thiQ thiamine ABC tr 100.0 1.2E-33 2.6E-38 230.0 17.0 169 2-173 19-209 (213)
98 PRK11629 lolD lipoprotein tran 100.0 9.8E-34 2.1E-38 233.5 16.7 166 3-173 31-225 (233)
99 TIGR01184 ntrCD nitrate transp 100.0 1.4E-33 3.1E-38 232.3 17.5 168 3-173 7-195 (230)
100 COG4152 ABC-type uncharacteriz 100.0 4.3E-34 9.3E-39 232.0 14.1 174 5-183 26-219 (300)
101 cd03262 ABC_HisP_GlnQ_permease 100.0 7.3E-34 1.6E-38 230.9 15.5 165 3-171 22-213 (213)
102 PRK11819 putative ABC transpor 100.0 3.2E-33 7E-38 256.6 21.6 175 4-183 30-250 (556)
103 PRK10584 putative ABC transpor 100.0 1.5E-33 3.3E-38 231.4 17.5 165 3-172 32-225 (228)
104 PRK10575 iron-hydroxamate tran 100.0 1.3E-33 2.8E-38 237.2 17.2 177 2-182 32-236 (265)
105 cd03260 ABC_PstB_phosphate_tra 100.0 9E-34 1.9E-38 232.7 15.9 170 4-178 23-224 (227)
106 PRK11248 tauB taurine transpor 100.0 1.5E-33 3.3E-38 235.6 17.3 168 2-173 22-211 (255)
107 PRK14250 phosphate ABC transpo 100.0 2E-33 4.4E-38 232.9 17.9 175 2-181 24-219 (241)
108 PRK11300 livG leucine/isoleuci 100.0 2E-33 4.3E-38 234.4 17.9 175 3-182 27-242 (255)
109 PRK09984 phosphonate/organopho 100.0 1.6E-33 3.5E-38 236.1 17.4 182 3-189 26-248 (262)
110 PRK11231 fecE iron-dicitrate t 100.0 1.8E-33 3.9E-38 234.9 17.5 177 2-182 23-226 (255)
111 PRK13641 cbiO cobalt transport 100.0 1.7E-33 3.7E-38 239.1 17.5 176 4-182 30-233 (287)
112 cd03237 ABC_RNaseL_inhibitor_d 100.0 5E-33 1.1E-37 231.4 19.9 166 2-171 20-194 (246)
113 PRK11124 artP arginine transpo 100.0 1.2E-33 2.7E-38 234.0 15.9 174 3-181 24-228 (242)
114 TIGR03771 anch_rpt_ABC anchore 100.0 2.7E-33 5.8E-38 229.7 17.4 178 3-183 2-201 (223)
115 TIGR03740 galliderm_ABC gallid 100.0 2.8E-33 6E-38 229.3 17.3 173 3-179 22-209 (223)
116 COG0411 LivG ABC-type branched 100.0 2.8E-33 6E-38 227.5 17.1 175 4-183 27-239 (250)
117 TIGR02769 nickel_nikE nickel i 100.0 2.4E-33 5.3E-38 235.5 17.2 178 3-182 33-239 (265)
118 PRK15093 antimicrobial peptide 100.0 3.7E-33 8.1E-38 241.3 18.8 178 3-181 29-246 (330)
119 TIGR00972 3a0107s01c2 phosphat 100.0 5.1E-33 1.1E-37 231.1 18.6 173 3-181 23-230 (247)
120 PRK15112 antimicrobial peptide 100.0 3.4E-33 7.4E-38 234.9 17.7 179 2-182 34-238 (267)
121 TIGR03005 ectoine_ehuA ectoine 100.0 2.7E-33 5.9E-38 233.4 16.9 176 3-182 22-235 (252)
122 PRK13548 hmuV hemin importer A 100.0 5.4E-33 1.2E-37 232.6 18.7 177 3-183 24-230 (258)
123 COG1123 ATPase components of v 100.0 2.5E-33 5.4E-38 251.2 17.7 175 5-180 315-516 (539)
124 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.3E-33 1.1E-37 255.0 20.3 178 2-183 26-248 (552)
125 PRK09544 znuC high-affinity zi 100.0 4.2E-33 9.1E-38 232.5 17.8 175 3-182 26-208 (251)
126 TIGR03873 F420-0_ABC_ATP propo 100.0 3.6E-33 7.9E-38 233.2 17.4 175 3-182 23-225 (256)
127 PRK13646 cbiO cobalt transport 100.0 2.2E-33 4.8E-38 238.3 16.2 175 4-181 30-233 (286)
128 PRK11819 putative ABC transpor 100.0 9.8E-33 2.1E-37 253.5 21.4 179 4-184 347-534 (556)
129 cd03257 ABC_NikE_OppD_transpor 100.0 6.3E-33 1.4E-37 227.4 18.0 170 3-173 27-226 (228)
130 PRK11022 dppD dipeptide transp 100.0 5.1E-33 1.1E-37 240.0 18.2 176 3-180 29-240 (326)
131 TIGR02770 nickel_nikD nickel i 100.0 7.8E-33 1.7E-37 227.8 18.2 177 3-182 8-214 (230)
132 PRK13631 cbiO cobalt transport 100.0 4.7E-33 1E-37 239.6 17.7 175 3-181 48-263 (320)
133 PRK13649 cbiO cobalt transport 100.0 4.8E-33 1E-37 235.3 17.4 175 3-181 29-232 (280)
134 TIGR01978 sufC FeS assembly AT 100.0 7.4E-33 1.6E-37 229.2 18.1 176 2-182 21-233 (243)
135 PRK10253 iron-enterobactin tra 100.0 6.3E-33 1.4E-37 233.0 17.9 176 3-182 29-232 (265)
136 PRK11701 phnK phosphonate C-P 100.0 5.4E-33 1.2E-37 232.4 17.4 178 2-181 27-239 (258)
137 PRK09473 oppD oligopeptide tra 100.0 6.2E-33 1.4E-37 239.8 18.2 178 3-181 38-249 (330)
138 PRK11614 livF leucine/isoleuci 100.0 4.8E-33 1E-37 229.8 16.4 177 2-182 26-225 (237)
139 PRK10636 putative ABC transpor 100.0 1.5E-32 3.2E-37 255.6 21.4 177 3-183 23-236 (638)
140 PLN03073 ABC transporter F fam 100.0 1.2E-32 2.7E-37 258.2 21.0 181 3-184 531-715 (718)
141 PRK13638 cbiO cobalt transport 100.0 7.1E-33 1.5E-37 233.4 17.5 176 3-181 23-223 (271)
142 PRK15439 autoinducer 2 ABC tra 100.0 7.3E-33 1.6E-37 251.9 18.8 175 3-182 33-228 (510)
143 PRK13650 cbiO cobalt transport 100.0 5.9E-33 1.3E-37 234.9 16.8 175 4-182 30-228 (279)
144 PRK10261 glutathione transport 100.0 5.4E-33 1.2E-37 258.0 18.0 176 3-181 346-551 (623)
145 COG0444 DppD ABC-type dipeptid 100.0 6.7E-33 1.5E-37 233.6 16.8 188 4-192 28-260 (316)
146 PRK13652 cbiO cobalt transport 100.0 1.3E-32 2.8E-37 232.6 18.6 176 3-182 26-226 (277)
147 PRK13636 cbiO cobalt transport 100.0 1E-32 2.2E-37 233.9 17.7 177 3-182 28-230 (283)
148 TIGR03269 met_CoM_red_A2 methy 100.0 9.6E-33 2.1E-37 251.6 18.4 176 2-182 305-516 (520)
149 cd03300 ABC_PotA_N PotA is an 100.0 1.2E-32 2.6E-37 227.0 17.1 176 2-181 21-218 (232)
150 COG1137 YhbG ABC-type (unclass 100.0 5.9E-33 1.3E-37 219.5 14.4 180 6-190 29-236 (243)
151 cd03299 ABC_ModC_like Archeal 100.0 1.6E-32 3.4E-37 226.7 17.6 177 2-182 20-218 (235)
152 PRK13645 cbiO cobalt transport 100.0 1.4E-32 3.1E-37 233.5 17.7 177 2-181 32-238 (289)
153 COG4598 HisP ABC-type histidin 100.0 1.3E-33 2.8E-38 220.4 10.1 173 5-181 30-239 (256)
154 PRK13644 cbiO cobalt transport 100.0 1.2E-32 2.7E-37 232.4 16.8 174 3-181 24-222 (274)
155 PRK13635 cbiO cobalt transport 100.0 1.5E-32 3.2E-37 232.4 17.2 176 2-181 28-227 (279)
156 PRK10762 D-ribose transporter 100.0 1.3E-32 2.7E-37 249.9 17.8 173 3-180 26-227 (501)
157 cd03267 ABC_NatA_like Similar 100.0 2.1E-32 4.6E-37 226.2 17.0 169 3-173 43-234 (236)
158 PRK13639 cbiO cobalt transport 100.0 2.1E-32 4.6E-37 231.0 17.2 177 3-182 24-225 (275)
159 PRK14247 phosphate ABC transpo 100.0 4.7E-32 1E-36 225.6 19.1 176 3-182 25-233 (250)
160 TIGR02323 CP_lyasePhnK phospho 100.0 2.8E-32 6.1E-37 227.3 17.6 177 3-181 25-236 (253)
161 PRK09700 D-allose transporter 100.0 1.3E-32 2.8E-37 250.3 16.9 170 3-174 285-490 (510)
162 PRK09700 D-allose transporter 100.0 1.3E-32 2.8E-37 250.2 16.9 174 3-181 27-232 (510)
163 PRK14273 phosphate ABC transpo 100.0 3.5E-32 7.5E-37 227.0 18.0 176 2-182 28-237 (254)
164 PRK14268 phosphate ABC transpo 100.0 3.4E-32 7.4E-37 227.6 17.9 174 3-181 34-240 (258)
165 PRK10418 nikD nickel transport 100.0 7.4E-32 1.6E-36 225.1 19.7 178 2-181 24-228 (254)
166 PRK10261 glutathione transport 100.0 1.6E-32 3.5E-37 254.9 17.3 178 2-181 37-256 (623)
167 PRK14242 phosphate transporter 100.0 4E-32 8.7E-37 226.4 17.8 173 3-181 28-235 (253)
168 PRK13549 xylose transporter AT 100.0 2.8E-32 6E-37 247.9 18.1 173 3-180 27-229 (506)
169 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-32 4.6E-37 248.9 16.9 176 3-181 285-490 (510)
170 PRK15056 manganese/iron transp 100.0 4.4E-32 9.4E-37 228.7 17.5 177 2-181 28-228 (272)
171 PRK10744 pstB phosphate transp 100.0 5.8E-32 1.2E-36 226.5 18.1 174 3-182 35-243 (260)
172 PRK15134 microcin C ABC transp 100.0 2.9E-32 6.2E-37 249.0 17.7 175 3-181 308-513 (529)
173 COG1117 PstB ABC-type phosphat 100.0 1.9E-33 4E-38 224.4 8.6 167 7-177 33-232 (253)
174 PRK10982 galactose/methyl gala 100.0 5.4E-32 1.2E-36 245.1 19.0 174 3-181 20-221 (491)
175 cd03245 ABCC_bacteriocin_expor 100.0 3.7E-32 8E-37 222.0 15.8 167 3-173 26-218 (220)
176 PRK13633 cobalt transporter AT 100.0 5.6E-32 1.2E-36 229.0 17.4 176 3-182 32-232 (280)
177 PRK11288 araG L-arabinose tran 100.0 2.8E-32 6.1E-37 247.6 16.6 177 3-182 275-484 (501)
178 TIGR00968 3a0106s01 sulfate AB 100.0 7.6E-32 1.6E-36 222.9 17.6 175 3-182 22-219 (237)
179 PRK14267 phosphate ABC transpo 100.0 6.7E-32 1.5E-36 225.0 17.3 175 4-182 27-236 (253)
180 TIGR03269 met_CoM_red_A2 methy 100.0 6.2E-32 1.4E-36 246.3 18.7 178 3-183 22-258 (520)
181 PRK13543 cytochrome c biogenes 100.0 6.6E-32 1.4E-36 220.1 16.7 163 3-168 33-212 (214)
182 PRK11147 ABC transporter ATPas 100.0 1.8E-31 3.9E-36 248.4 21.6 175 3-183 25-243 (635)
183 TIGR02633 xylG D-xylose ABC tr 100.0 7.1E-32 1.5E-36 244.8 18.4 168 3-173 23-221 (500)
184 PRK11288 araG L-arabinose tran 100.0 6.4E-32 1.4E-36 245.3 17.9 166 4-173 27-220 (501)
185 PRK13549 xylose transporter AT 100.0 3.6E-32 7.7E-37 247.2 16.2 176 3-181 284-492 (506)
186 COG4181 Predicted ABC-type tra 100.0 4.5E-32 9.8E-37 210.0 14.2 165 4-172 33-225 (228)
187 PRK14241 phosphate transporter 100.0 1.3E-31 2.9E-36 224.0 18.3 176 2-181 25-240 (258)
188 cd03252 ABCC_Hemolysin The ABC 100.0 1.7E-31 3.7E-36 220.4 18.7 174 3-182 24-224 (237)
189 PRK10762 D-ribose transporter 100.0 6E-32 1.3E-36 245.5 17.3 176 3-181 274-482 (501)
190 PRK13632 cbiO cobalt transport 100.0 9E-32 1.9E-36 226.7 17.1 174 3-181 31-229 (271)
191 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-31 3E-36 219.8 17.8 174 3-182 25-225 (229)
192 PRK14269 phosphate ABC transpo 100.0 1E-31 2.3E-36 223.2 17.2 174 3-181 24-228 (246)
193 COG1123 ATPase components of v 100.0 8.4E-32 1.8E-36 241.3 17.8 178 3-181 31-242 (539)
194 TIGR03608 L_ocin_972_ABC putat 100.0 6E-32 1.3E-36 218.5 15.3 159 3-166 20-206 (206)
195 PRK03695 vitamin B12-transport 100.0 2.1E-31 4.5E-36 221.8 18.7 175 3-182 18-221 (248)
196 PRK10419 nikE nickel transport 100.0 1.2E-31 2.7E-36 225.6 17.4 175 3-180 34-238 (268)
197 PRK13640 cbiO cobalt transport 100.0 1.5E-31 3.2E-36 226.6 17.6 175 3-181 29-230 (282)
198 PRK10247 putative ABC transpor 100.0 8.3E-32 1.8E-36 221.1 15.5 160 2-167 28-211 (225)
199 PRK13648 cbiO cobalt transport 100.0 9.3E-32 2E-36 226.3 16.0 175 4-182 32-230 (269)
200 PRK13538 cytochrome c biogenes 100.0 7.7E-32 1.7E-36 218.1 14.9 162 2-166 22-202 (204)
201 TIGR02633 xylG D-xylose ABC tr 100.0 5.1E-32 1.1E-36 245.8 15.4 169 3-173 282-483 (500)
202 PRK14256 phosphate ABC transpo 100.0 2.6E-31 5.7E-36 221.4 18.4 175 3-181 26-234 (252)
203 PRK14235 phosphate transporter 100.0 2.8E-31 6E-36 223.3 18.6 174 3-181 41-249 (267)
204 PRK14248 phosphate ABC transpo 100.0 2.2E-31 4.9E-36 223.8 18.0 174 3-181 43-250 (268)
205 PRK14239 phosphate transporter 100.0 2.1E-31 4.6E-36 221.8 17.6 174 3-181 27-234 (252)
206 PRK13642 cbiO cobalt transport 100.0 1.9E-31 4E-36 225.5 17.1 176 3-182 29-228 (277)
207 PRK14270 phosphate ABC transpo 100.0 2.7E-31 5.8E-36 221.2 17.8 174 3-181 26-233 (251)
208 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-31 5E-36 217.9 17.1 163 3-167 30-223 (224)
209 cd03251 ABCC_MsbA MsbA is an e 100.0 3.4E-31 7.3E-36 218.2 18.1 174 3-182 24-224 (234)
210 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-31 3.6E-36 225.5 16.6 174 2-182 25-224 (275)
211 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-31 2.7E-36 219.2 15.2 165 3-171 27-219 (220)
212 cd03244 ABCC_MRP_domain2 Domai 100.0 1.8E-31 3.8E-36 218.1 16.0 166 3-173 26-217 (221)
213 cd03231 ABC_CcmA_heme_exporter 100.0 1.9E-31 4.2E-36 215.4 16.0 161 3-166 22-198 (201)
214 cd03234 ABCG_White The White s 100.0 3.3E-31 7.1E-36 217.5 17.2 167 3-173 29-224 (226)
215 PRK14262 phosphate ABC transpo 100.0 3.9E-31 8.5E-36 220.0 17.9 175 3-182 25-233 (250)
216 PRK14254 phosphate ABC transpo 100.0 3.5E-31 7.5E-36 224.7 17.8 175 2-181 60-267 (285)
217 PRK14244 phosphate ABC transpo 100.0 3E-31 6.5E-36 220.9 17.1 173 4-181 28-235 (251)
218 PRK15134 microcin C ABC transp 100.0 2.1E-31 4.6E-36 243.3 17.5 177 3-181 31-244 (529)
219 PRK14275 phosphate ABC transpo 100.0 3.6E-31 7.7E-36 224.8 17.7 174 3-181 61-268 (286)
220 PRK14259 phosphate ABC transpo 100.0 4.4E-31 9.5E-36 222.3 18.0 161 3-168 35-228 (269)
221 PRK14245 phosphate ABC transpo 100.0 4.1E-31 8.9E-36 220.0 17.6 174 3-182 25-233 (250)
222 PRK14246 phosphate ABC transpo 100.0 4.4E-31 9.5E-36 221.0 17.8 175 4-182 33-240 (257)
223 PRK14251 phosphate ABC transpo 100.0 3.3E-31 7.2E-36 220.6 17.0 174 3-181 26-233 (251)
224 PRK14272 phosphate ABC transpo 100.0 6.7E-31 1.4E-35 218.8 18.7 175 3-181 26-234 (252)
225 PRK13547 hmuV hemin importer A 100.0 4.4E-31 9.5E-36 222.7 17.8 175 3-182 23-243 (272)
226 COG0410 LivF ABC-type branched 100.0 2.6E-31 5.6E-36 214.5 15.6 176 3-183 25-226 (237)
227 PRK10938 putative molybdenum t 100.0 1.5E-31 3.2E-36 242.2 16.0 175 3-181 25-222 (490)
228 PRK13409 putative ATPase RIL; 100.0 2.1E-31 4.6E-36 245.5 17.1 162 4-172 362-532 (590)
229 PRK14240 phosphate transporter 100.0 7.4E-31 1.6E-35 218.4 18.7 174 3-181 25-232 (250)
230 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.7E-31 5.9E-36 249.2 17.9 177 2-183 474-673 (686)
231 PRK14274 phosphate ABC transpo 100.0 6E-31 1.3E-35 220.1 18.0 174 4-182 35-242 (259)
232 PRK13546 teichoic acids export 100.0 1.8E-30 3.9E-35 218.1 20.5 176 3-184 46-233 (264)
233 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.5E-31 1.6E-35 212.6 17.6 159 3-173 30-203 (207)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.3E-31 1.6E-35 216.8 17.8 174 3-182 25-225 (238)
235 cd03223 ABCD_peroxisomal_ALDP 100.0 4.7E-31 1E-35 207.3 15.8 140 4-171 24-165 (166)
236 PRK14238 phosphate transporter 100.0 5.4E-31 1.2E-35 222.0 17.2 174 3-181 46-253 (271)
237 KOG0066|consensus 100.0 8.7E-32 1.9E-36 233.8 12.6 190 5-195 611-803 (807)
238 CHL00131 ycf16 sulfate ABC tra 100.0 9.7E-31 2.1E-35 217.8 18.5 174 2-179 28-237 (252)
239 PRK09580 sufC cysteine desulfu 100.0 1.4E-30 3.1E-35 216.2 19.2 175 3-180 23-232 (248)
240 PRK14253 phosphate ABC transpo 100.0 1.1E-30 2.3E-35 217.3 18.2 173 3-181 25-231 (249)
241 PRK14249 phosphate ABC transpo 100.0 1.1E-30 2.4E-35 217.5 18.3 174 3-181 26-233 (251)
242 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.6E-31 1.4E-35 215.7 16.6 167 3-173 44-222 (224)
243 PRK14237 phosphate transporter 100.0 1.5E-30 3.2E-35 218.9 18.4 173 3-181 42-249 (267)
244 cd03253 ABCC_ATM1_transporter 100.0 1E-30 2.2E-35 215.6 17.0 174 3-182 23-223 (236)
245 cd03215 ABC_Carb_Monos_II This 100.0 5.7E-31 1.2E-35 209.5 14.8 143 3-171 22-182 (182)
246 PRK10982 galactose/methyl gala 100.0 6.5E-31 1.4E-35 238.1 17.0 169 3-173 270-471 (491)
247 PRK14243 phosphate transporter 100.0 1.6E-30 3.4E-35 218.4 17.9 174 3-182 32-247 (264)
248 cd03248 ABCC_TAP TAP, the Tran 100.0 5.8E-31 1.3E-35 215.8 14.6 164 3-171 36-226 (226)
249 PRK14255 phosphate ABC transpo 100.0 2E-30 4.4E-35 216.0 18.0 173 3-180 27-233 (252)
250 PRK14263 phosphate ABC transpo 100.0 2.2E-30 4.9E-35 217.2 18.3 176 3-182 30-244 (261)
251 PRK14265 phosphate ABC transpo 100.0 2.3E-30 4.9E-35 218.6 18.3 174 3-181 42-256 (274)
252 PRK10790 putative multidrug tr 100.0 8.3E-31 1.8E-35 242.2 17.0 176 2-182 362-562 (592)
253 TIGR01257 rim_protein retinal- 100.0 1.3E-30 2.8E-35 262.3 19.2 177 3-184 952-1150(2272)
254 COG4161 ArtP ABC-type arginine 100.0 1.2E-31 2.5E-36 206.3 9.0 162 18-183 40-230 (242)
255 cd03250 ABCC_MRP_domain1 Domai 100.0 2.9E-30 6.4E-35 208.7 17.6 161 3-170 27-204 (204)
256 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-30 2.3E-35 246.0 17.3 177 2-183 500-700 (710)
257 PRK14271 phosphate ABC transpo 100.0 2E-30 4.4E-35 219.1 17.3 174 3-182 43-250 (276)
258 TIGR01257 rim_protein retinal- 100.0 1.1E-30 2.4E-35 262.7 18.5 176 4-184 1962-2160(2272)
259 COG2274 SunT ABC-type bacterio 100.0 7.5E-31 1.6E-35 244.6 16.1 174 4-183 496-696 (709)
260 PRK14236 phosphate transporter 100.0 3.6E-30 7.8E-35 217.1 18.5 173 3-181 47-254 (272)
261 cd03230 ABC_DR_subfamily_A Thi 100.0 1.5E-30 3.2E-35 205.6 15.1 137 3-171 22-173 (173)
262 PRK14258 phosphate ABC transpo 100.0 3.5E-30 7.5E-35 215.9 18.2 175 3-182 29-244 (261)
263 COG4525 TauB ABC-type taurine 100.0 3.8E-31 8.1E-36 208.8 11.5 153 18-173 43-215 (259)
264 PRK11174 cysteine/glutathione 100.0 1.7E-30 3.7E-35 239.9 17.1 175 2-183 371-572 (588)
265 PRK14260 phosphate ABC transpo 100.0 3.7E-30 8E-35 215.5 17.5 173 3-181 29-241 (259)
266 cd03290 ABCC_SUR1_N The SUR do 100.0 2.9E-30 6.3E-35 210.7 16.3 163 3-170 23-218 (218)
267 PRK13539 cytochrome c biogenes 100.0 2.4E-30 5.1E-35 209.9 15.4 159 4-167 25-199 (207)
268 PRK14252 phosphate ABC transpo 100.0 6.4E-30 1.4E-34 214.7 18.0 173 3-181 38-247 (265)
269 cd03246 ABCC_Protease_Secretio 100.0 1.9E-30 4.2E-35 204.9 14.0 134 3-171 24-173 (173)
270 PRK14264 phosphate ABC transpo 100.0 6.4E-30 1.4E-34 218.9 18.2 176 2-182 66-288 (305)
271 COG4988 CydD ABC-type transpor 100.0 2.4E-30 5.3E-35 231.5 16.1 173 4-182 344-542 (559)
272 cd03288 ABCC_SUR2 The SUR doma 100.0 6.5E-30 1.4E-34 213.8 17.7 174 3-182 43-242 (257)
273 PRK14261 phosphate ABC transpo 100.0 6.8E-30 1.5E-34 213.0 17.7 174 4-182 29-236 (253)
274 TIGR01166 cbiO cobalt transpor 100.0 9.4E-31 2E-35 209.4 12.0 150 3-155 14-189 (190)
275 PRK14257 phosphate ABC transpo 100.0 7E-30 1.5E-34 220.7 18.2 174 3-181 104-311 (329)
276 cd03214 ABC_Iron-Siderophores_ 100.0 1E-30 2.2E-35 207.7 11.8 151 3-172 21-177 (180)
277 COG4172 ABC-type uncharacteriz 100.0 5.4E-30 1.2E-34 220.6 17.0 175 4-180 310-513 (534)
278 PRK13545 tagH teichoic acids e 100.0 9.4E-30 2E-34 228.9 19.2 175 2-182 45-231 (549)
279 TIGR01189 ccmA heme ABC export 100.0 3.2E-30 7E-35 207.6 14.3 158 2-164 21-196 (198)
280 cd03229 ABC_Class3 This class 100.0 4.2E-30 9.1E-35 203.9 14.5 136 4-170 23-178 (178)
281 PRK11176 lipid transporter ATP 100.0 3.7E-30 8.1E-35 237.3 16.1 177 2-183 364-567 (582)
282 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.5E-29 3.4E-34 214.3 18.4 173 3-182 59-246 (282)
283 PRK15177 Vi polysaccharide exp 100.0 1.3E-29 2.8E-34 206.6 17.1 174 2-182 8-191 (213)
284 PRK14266 phosphate ABC transpo 100.0 9.5E-30 2.1E-34 211.7 16.5 175 3-182 25-233 (250)
285 cd03247 ABCC_cytochrome_bd The 100.0 9.4E-30 2E-34 201.8 15.0 138 4-173 25-176 (178)
286 TIGR03375 type_I_sec_LssB type 100.0 7.9E-30 1.7E-34 239.6 17.1 176 3-183 487-688 (694)
287 TIGR02203 MsbA_lipidA lipid A 100.0 7.2E-30 1.6E-34 234.8 16.1 176 2-182 353-555 (571)
288 PRK10938 putative molybdenum t 100.0 3.7E-30 8E-35 233.1 13.3 170 3-174 282-484 (490)
289 PRK13540 cytochrome c biogenes 100.0 9.7E-30 2.1E-34 205.2 14.3 156 3-162 23-195 (200)
290 PRK11160 cysteine/glutathione 100.0 1.8E-29 3.9E-34 232.6 17.7 175 3-182 362-561 (574)
291 cd03213 ABCG_EPDR ABCG transpo 100.0 2.2E-29 4.8E-34 202.4 15.9 144 4-173 32-192 (194)
292 TIGR01193 bacteriocin_ABC ABC- 100.0 2.1E-29 4.5E-34 237.2 18.1 174 3-182 496-696 (708)
293 cd03233 ABC_PDR_domain1 The pl 100.0 3.1E-29 6.6E-34 202.8 16.5 153 2-173 28-200 (202)
294 COG1129 MglA ABC-type sugar tr 100.0 1.8E-29 3.9E-34 224.9 16.3 167 4-173 31-225 (500)
295 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.7E-29 5.8E-34 202.8 15.8 148 2-177 21-188 (200)
296 cd03228 ABCC_MRP_Like The MRP 100.0 1.7E-29 3.8E-34 199.1 14.1 133 3-170 24-171 (171)
297 TIGR01842 type_I_sec_PrtD type 100.0 3.9E-29 8.5E-34 229.0 18.6 175 2-182 339-541 (544)
298 PRK13657 cyclic beta-1,2-gluca 100.0 3.9E-29 8.5E-34 230.9 18.3 176 2-182 356-557 (588)
299 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-29 5.4E-34 236.8 17.0 176 3-183 503-702 (711)
300 TIGR01192 chvA glucan exporter 100.0 6E-29 1.3E-33 229.7 19.2 176 2-183 356-558 (585)
301 PRK10789 putative multidrug tr 100.0 4.1E-29 9E-34 230.0 17.8 175 2-182 336-537 (569)
302 cd03232 ABC_PDR_domain2 The pl 100.0 3.3E-29 7.1E-34 201.1 14.9 146 3-173 29-190 (192)
303 TIGR01846 type_I_sec_HlyB type 100.0 3E-29 6.5E-34 235.7 16.2 176 2-183 478-680 (694)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.4E-29 1.2E-33 191.3 14.4 121 3-170 22-144 (144)
305 TIGR00954 3a01203 Peroxysomal 100.0 5.4E-29 1.2E-33 232.6 17.4 163 2-169 473-654 (659)
306 PLN03211 ABC transporter G-25; 100.0 6.1E-29 1.3E-33 231.8 17.5 177 3-182 90-295 (659)
307 PRK13541 cytochrome c biogenes 100.0 3.6E-29 7.7E-34 201.2 13.2 153 3-158 22-188 (195)
308 KOG0927|consensus 100.0 1.5E-29 3.3E-34 223.9 11.3 186 4-189 413-602 (614)
309 TIGR02204 MsbA_rel ABC transpo 100.0 7.5E-29 1.6E-33 228.3 16.2 175 2-182 361-562 (576)
310 COG1132 MdlB ABC-type multidru 100.0 1.3E-28 2.8E-33 226.6 17.2 173 4-183 352-552 (567)
311 COG4619 ABC-type uncharacteriz 100.0 1.2E-29 2.6E-34 196.0 8.5 163 6-171 28-212 (223)
312 COG4987 CydC ABC-type transpor 100.0 2.7E-29 5.9E-34 222.5 11.4 175 4-183 361-561 (573)
313 cd03216 ABC_Carb_Monos_I This 100.0 1.8E-28 3.9E-33 192.1 14.1 135 3-172 22-161 (163)
314 COG4559 ABC-type hemin transpo 100.0 1.8E-28 3.8E-33 195.8 13.6 181 7-192 27-240 (259)
315 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.2E-28 6.9E-33 203.5 15.9 161 4-168 23-214 (255)
316 PLN03232 ABC transporter C fam 100.0 2.7E-28 5.8E-33 244.2 16.9 175 2-182 1257-1457(1495)
317 KOG0062|consensus 100.0 1.8E-28 3.9E-33 216.0 13.4 184 5-189 388-575 (582)
318 COG3845 ABC-type uncharacteriz 100.0 2.4E-28 5.3E-33 214.7 14.0 166 4-173 27-220 (501)
319 PRK13409 putative ATPase RIL; 100.0 2.9E-28 6.4E-33 224.7 15.2 161 4-169 96-287 (590)
320 PLN03073 ABC transporter F fam 100.0 1.3E-27 2.9E-32 224.3 19.7 109 75-183 323-431 (718)
321 TIGR02857 CydD thiol reductant 100.0 3.9E-28 8.5E-33 221.6 15.4 161 2-166 343-529 (529)
322 cd03222 ABC_RNaseL_inhibitor T 100.0 1E-27 2.2E-32 190.1 15.7 125 3-172 21-151 (177)
323 PRK10522 multidrug transporter 100.0 4.1E-28 8.9E-33 222.5 15.3 171 2-179 344-535 (547)
324 PRK10535 macrolide transporter 100.0 7.9E-28 1.7E-32 224.4 17.2 166 4-173 31-223 (648)
325 PLN03130 ABC transporter C fam 100.0 5.8E-28 1.3E-32 242.5 17.1 175 2-182 1260-1460(1622)
326 COG4608 AppF ABC-type oligopep 100.0 2.8E-28 6E-33 201.7 12.3 149 5-174 37-191 (268)
327 KOG0055|consensus 100.0 4.9E-28 1.1E-32 231.4 15.6 174 4-183 376-576 (1228)
328 COG4586 ABC-type uncharacteriz 100.0 2.9E-28 6.3E-33 200.8 12.1 178 3-184 46-247 (325)
329 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-27 2.6E-32 222.1 16.9 174 4-181 48-254 (617)
330 COG4604 CeuD ABC-type enteroch 100.0 5.3E-29 1.2E-33 196.8 6.5 182 5-191 25-234 (252)
331 KOG0057|consensus 100.0 7.5E-28 1.6E-32 213.6 14.4 174 4-183 375-574 (591)
332 COG4172 ABC-type uncharacteriz 100.0 1.8E-27 3.8E-32 205.1 15.0 176 3-179 32-243 (534)
333 PTZ00243 ABC transporter; Prov 100.0 2.8E-27 6E-32 237.2 17.7 175 3-182 1332-1532(1560)
334 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.6E-27 3.4E-32 219.0 14.1 166 2-173 363-550 (555)
335 COG1119 ModF ABC-type molybden 99.9 2.2E-28 4.9E-33 199.0 7.5 169 3-173 53-253 (257)
336 PTZ00265 multidrug resistance 99.9 2.5E-27 5.4E-32 236.1 16.4 176 3-182 1190-1451(1466)
337 TIGR00957 MRP_assoc_pro multi 99.9 6E-27 1.3E-31 234.8 18.1 176 2-183 1307-1508(1522)
338 TIGR02868 CydC thiol reductant 99.9 3.3E-27 7.2E-32 215.5 13.3 149 2-153 356-529 (529)
339 COG4107 PhnK ABC-type phosphon 99.9 9.4E-27 2E-31 181.2 13.4 169 5-173 30-232 (258)
340 PTZ00265 multidrug resistance 99.9 7.1E-27 1.5E-31 232.9 15.8 162 3-169 407-655 (1466)
341 TIGR01271 CFTR_protein cystic 99.9 1.6E-26 3.5E-31 231.2 17.3 174 2-182 1240-1439(1490)
342 TIGR00956 3a01205 Pleiotropic 99.9 1.3E-26 2.8E-31 230.6 16.2 171 4-178 786-988 (1394)
343 COG1134 TagH ABC-type polysacc 99.9 8.1E-26 1.8E-30 184.1 16.2 179 4-188 50-241 (249)
344 TIGR01271 CFTR_protein cystic 99.9 4.2E-26 9.2E-31 228.2 17.5 172 3-182 448-635 (1490)
345 TIGR00957 MRP_assoc_pro multi 99.9 4.5E-26 9.6E-31 228.6 17.7 172 3-182 660-849 (1522)
346 COG4674 Uncharacterized ABC-ty 99.9 3E-26 6.6E-31 180.9 12.8 175 3-182 27-234 (249)
347 cd03238 ABC_UvrA The excision 99.9 7.5E-26 1.6E-30 179.3 14.6 135 4-171 18-166 (176)
348 TIGR00956 3a01205 Pleiotropic 99.9 7.5E-26 1.6E-30 225.1 17.7 174 4-181 84-298 (1394)
349 PLN03140 ABC transporter G fam 99.9 5.9E-26 1.3E-30 225.9 16.7 171 4-178 903-1105(1470)
350 COG4167 SapF ABC-type antimicr 99.9 1.2E-25 2.5E-30 176.3 14.6 173 5-177 37-234 (267)
351 KOG0058|consensus 99.9 8.2E-26 1.8E-30 206.3 15.4 174 4-183 491-691 (716)
352 PLN03232 ABC transporter C fam 99.9 8.8E-26 1.9E-30 226.1 16.5 174 3-182 639-827 (1495)
353 COG1101 PhnK ABC-type uncharac 99.9 4.4E-26 9.4E-31 182.4 11.4 167 6-173 31-229 (263)
354 PTZ00243 ABC transporter; Prov 99.9 2E-25 4.3E-30 223.9 18.6 171 4-182 683-869 (1560)
355 PLN03130 ABC transporter C fam 99.9 1.2E-25 2.7E-30 225.8 16.5 173 3-182 639-827 (1622)
356 KOG0059|consensus 99.9 1.3E-25 2.9E-30 215.3 14.1 172 7-183 591-787 (885)
357 PLN03140 ABC transporter G fam 99.9 2.1E-25 4.6E-30 221.9 15.5 173 5-181 189-425 (1470)
358 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.8E-25 8.3E-30 171.8 13.5 120 4-170 22-157 (157)
359 COG4618 ArpD ABC-type protease 99.9 2.8E-25 6.1E-30 195.9 14.0 176 3-183 358-560 (580)
360 cd03270 ABC_UvrA_I The excisio 99.9 2.5E-24 5.4E-29 177.0 18.2 95 77-173 118-224 (226)
361 KOG0062|consensus 99.9 7.6E-26 1.6E-30 199.5 7.1 173 7-187 106-289 (582)
362 KOG0055|consensus 99.9 1.1E-24 2.4E-29 208.5 15.2 173 4-183 1013-1213(1228)
363 COG4133 CcmA ABC-type transpor 99.9 4.4E-24 9.6E-29 167.6 9.1 144 12-158 32-195 (209)
364 cd03278 ABC_SMC_barmotin Barmo 99.9 2.2E-23 4.8E-28 168.1 12.5 146 4-169 20-191 (197)
365 KOG0061|consensus 99.9 2.4E-23 5.1E-28 192.8 14.2 173 4-180 53-257 (613)
366 KOG0054|consensus 99.9 9.8E-23 2.1E-27 198.6 15.8 173 4-183 544-731 (1381)
367 COG4136 ABC-type uncharacteriz 99.9 1.8E-23 3.8E-28 159.3 8.1 157 6-166 27-207 (213)
368 COG1129 MglA ABC-type sugar tr 99.9 1.4E-22 3E-27 181.0 14.1 168 6-173 284-481 (500)
369 cd03271 ABC_UvrA_II The excisi 99.9 1.3E-22 2.9E-27 169.8 13.1 117 56-173 128-257 (261)
370 KOG0927|consensus 99.9 1E-22 2.2E-27 180.7 12.7 108 76-183 201-309 (614)
371 COG1245 Predicted ATPase, RNas 99.9 2E-22 4.4E-27 176.1 14.3 191 5-202 365-569 (591)
372 COG0396 sufC Cysteine desulfur 99.9 2.3E-21 4.9E-26 156.7 17.1 175 5-184 28-234 (251)
373 COG4778 PhnL ABC-type phosphon 99.9 1.3E-23 2.9E-28 162.9 4.0 148 18-167 49-226 (235)
374 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.5E-22 1.2E-26 161.6 11.8 153 9-171 30-211 (213)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.9E-21 4E-26 162.2 9.8 157 9-167 26-242 (251)
376 KOG0054|consensus 99.9 2.1E-21 4.5E-26 189.4 11.5 174 2-181 1161-1360(1381)
377 cd03240 ABC_Rad50 The catalyti 99.8 5.6E-21 1.2E-25 154.8 10.5 147 10-170 24-199 (204)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.8 6.2E-21 1.3E-25 157.9 10.0 75 92-167 154-234 (243)
379 PF00005 ABC_tran: ABC transpo 99.8 2.6E-21 5.6E-26 146.4 4.4 113 4-125 8-137 (137)
380 COG5265 ATM1 ABC-type transpor 99.8 1.2E-20 2.6E-25 163.6 9.0 173 5-182 287-485 (497)
381 COG4138 BtuD ABC-type cobalami 99.8 8.9E-22 1.9E-26 153.5 1.5 186 3-193 21-232 (248)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.6E-21 3.5E-26 158.9 1.3 153 10-169 27-205 (212)
383 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.2E-19 2.7E-24 146.4 10.5 150 6-170 19-192 (198)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.8 7E-20 1.5E-24 152.4 9.0 159 9-168 23-233 (247)
385 TIGR00630 uvra excinuclease AB 99.8 1.8E-19 3.8E-24 172.5 12.9 101 79-181 470-581 (924)
386 KOG0056|consensus 99.8 1.6E-20 3.5E-25 165.5 5.4 172 6-182 563-760 (790)
387 PRK00349 uvrA excinuclease ABC 99.8 1E-18 2.2E-23 167.6 17.9 123 58-182 791-926 (943)
388 PRK00349 uvrA excinuclease ABC 99.8 1.7E-19 3.8E-24 172.9 12.5 102 79-182 472-584 (943)
389 COG4178 ABC-type uncharacteriz 99.8 6.7E-19 1.4E-23 160.3 12.9 160 4-167 416-587 (604)
390 TIGR00630 uvra excinuclease AB 99.8 1.3E-18 2.7E-23 166.7 15.0 104 75-180 807-922 (924)
391 COG3845 ABC-type uncharacteriz 99.8 2.6E-18 5.6E-23 151.7 12.9 167 6-173 283-483 (501)
392 KOG0066|consensus 99.8 1.7E-19 3.6E-24 157.6 3.7 114 74-187 390-503 (807)
393 PRK00635 excinuclease ABC subu 99.8 4.9E-18 1.1E-22 169.7 14.1 102 78-182 791-905 (1809)
394 PRK00635 excinuclease ABC subu 99.8 4.3E-18 9.3E-23 170.2 13.0 101 79-181 459-570 (1809)
395 KOG0065|consensus 99.7 2.2E-18 4.7E-23 166.0 6.4 163 18-183 829-1021(1391)
396 COG4170 SapD ABC-type antimicr 99.7 2.7E-18 5.9E-23 137.7 5.8 132 42-173 89-239 (330)
397 COG1245 Predicted ATPase, RNas 99.7 4.7E-18 1E-22 148.9 7.5 93 75-168 193-288 (591)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.7 2.3E-16 4.9E-21 128.7 8.5 79 92-170 122-211 (213)
399 cd03239 ABC_SMC_head The struc 99.6 1.2E-15 2.5E-20 121.2 10.3 71 97-168 95-172 (178)
400 cd03280 ABC_MutS2 MutS2 homolo 99.6 1.4E-16 3E-21 128.6 4.0 78 93-172 88-169 (200)
401 cd03241 ABC_RecN RecN ATPase i 99.6 9.3E-16 2E-20 129.7 9.1 75 95-170 169-249 (276)
402 KOG0060|consensus 99.6 3.3E-15 7.2E-20 134.1 12.6 155 12-170 465-643 (659)
403 TIGR00618 sbcc exonuclease Sbc 99.6 3.3E-15 7.1E-20 146.4 10.9 78 92-169 946-1036(1042)
404 COG4615 PvdE ABC-type sideroph 99.6 1.9E-16 4E-21 137.0 1.7 166 6-176 348-531 (546)
405 KOG2355|consensus 99.6 8.8E-15 1.9E-19 117.1 9.9 159 12-173 44-228 (291)
406 TIGR00634 recN DNA repair prot 99.6 8.4E-15 1.8E-19 135.1 10.1 75 95-170 439-519 (563)
407 PHA02562 46 endonuclease subun 99.6 1E-14 2.2E-19 134.1 9.6 89 78-171 454-555 (562)
408 cd03227 ABC_Class2 ABC-type Cl 99.6 2.3E-14 4.9E-19 112.0 9.2 73 95-168 76-155 (162)
409 PRK10869 recombination and rep 99.5 4.9E-14 1.1E-18 129.5 10.5 74 95-169 429-508 (553)
410 COG0178 UvrA Excinuclease ATPa 99.5 1.1E-13 2.4E-18 128.5 12.7 107 76-183 802-919 (935)
411 PRK10246 exonuclease subunit S 99.5 1.3E-13 2.9E-18 135.0 10.8 77 92-168 945-1032(1047)
412 PRK03918 chromosome segregatio 99.5 1E-13 2.2E-18 133.7 9.8 76 92-168 784-868 (880)
413 cd03242 ABC_RecF RecF is a rec 99.5 1E-13 2.2E-18 116.9 8.4 77 94-171 181-269 (270)
414 PRK01156 chromosome segregatio 99.5 2E-13 4.3E-18 132.1 10.7 78 93-171 798-888 (895)
415 KOG0064|consensus 99.5 9E-14 1.9E-18 124.0 7.3 142 12-157 512-673 (728)
416 TIGR00606 rad50 rad50. This fa 99.5 1.2E-13 2.7E-18 138.0 8.7 69 93-161 1196-1278(1311)
417 COG2401 ABC-type ATPase fused 99.5 3.5E-13 7.7E-18 117.5 10.1 162 7-171 409-587 (593)
418 KOG0063|consensus 99.5 1.1E-13 2.5E-18 120.8 6.9 147 18-169 379-533 (592)
419 cd03285 ABC_MSH2_euk MutS2 hom 99.4 1.8E-13 3.9E-18 112.3 5.9 91 77-172 74-171 (222)
420 TIGR02168 SMC_prok_B chromosom 99.4 6.1E-13 1.3E-17 130.9 8.6 74 92-166 1085-1164(1179)
421 KOG0065|consensus 99.4 8.2E-13 1.8E-17 128.1 8.7 169 9-180 142-348 (1391)
422 PRK00064 recF recombination pr 99.4 1.7E-12 3.6E-17 113.8 8.8 79 93-171 270-359 (361)
423 TIGR02169 SMC_prok_A chromosom 99.3 4.6E-12 9.9E-17 125.0 8.9 75 93-168 1071-1151(1164)
424 PRK02224 chromosome segregatio 99.3 1.4E-11 3E-16 119.1 8.7 76 93-169 778-869 (880)
425 COG0178 UvrA Excinuclease ATPa 99.2 2.4E-10 5.3E-15 106.6 12.4 104 79-183 464-577 (935)
426 TIGR00611 recf recF protein. A 99.2 7.9E-11 1.7E-15 103.4 8.4 63 95-157 274-345 (365)
427 cd03243 ABC_MutS_homologs The 99.2 9.7E-11 2.1E-15 94.6 7.7 78 93-172 88-169 (202)
428 smart00534 MUTSac ATPase domai 99.1 4.1E-11 8.9E-16 95.6 4.1 78 82-162 48-130 (185)
429 KOG0063|consensus 99.1 2.1E-11 4.5E-16 106.8 2.4 92 76-168 194-288 (592)
430 cd03283 ABC_MutS-like MutS-lik 99.1 2.3E-10 5E-15 92.4 7.8 118 9-159 26-154 (199)
431 cd03282 ABC_MSH4_euk MutS4 hom 99.1 1.9E-10 4.2E-15 93.2 6.6 81 78-160 74-158 (204)
432 cd03281 ABC_MSH5_euk MutS5 hom 99.1 6.9E-10 1.5E-14 90.5 9.4 118 9-160 30-161 (213)
433 COG0419 SbcC ATPase involved i 99.1 5.6E-10 1.2E-14 108.4 10.0 76 92-168 811-897 (908)
434 TIGR02680 conserved hypothetic 99.0 3.7E-10 8E-15 113.2 7.7 62 93-154 1244-1317(1353)
435 PF02463 SMC_N: RecF/RecN/SMC 99.0 5.9E-09 1.3E-13 84.9 11.9 86 73-166 120-211 (220)
436 cd03284 ABC_MutS1 MutS1 homolo 99.0 1.4E-09 3E-14 89.0 7.9 70 101-171 94-170 (216)
437 PRK13695 putative NTPase; Prov 99.0 1.8E-09 3.9E-14 85.1 7.2 95 93-189 75-172 (174)
438 TIGR01069 mutS2 MutS2 family p 98.9 5.8E-10 1.3E-14 106.2 4.6 64 93-157 382-449 (771)
439 PRK14079 recF recombination pr 98.9 2.4E-09 5.2E-14 93.5 8.1 74 95-172 262-344 (349)
440 TIGR02858 spore_III_AA stage I 98.9 4.1E-09 8.8E-14 88.9 6.3 131 10-170 114-259 (270)
441 PRK00409 recombination and DNA 98.8 7.7E-09 1.7E-13 98.8 7.4 82 82-165 377-462 (782)
442 PF13304 AAA_21: AAA domain; P 98.8 1.5E-08 3.2E-13 81.9 7.7 64 93-156 233-302 (303)
443 cd01124 KaiC KaiC is a circadi 98.7 4E-08 8.6E-13 77.6 6.9 75 93-167 68-163 (187)
444 PF13558 SbcCD_C: Putative exo 98.6 5.8E-08 1.3E-12 68.6 5.5 49 93-141 29-90 (90)
445 PTZ00132 GTP-binding nuclear p 98.5 2.1E-07 4.5E-12 75.5 4.8 49 94-142 148-203 (215)
446 cd01128 rho_factor Transcripti 98.4 9.8E-07 2.1E-11 73.7 8.7 75 95-172 128-212 (249)
447 TIGR03185 DNA_S_dndD DNA sulfu 98.2 4.7E-06 1E-10 78.5 7.7 65 93-158 548-619 (650)
448 PRK13830 conjugal transfer pro 98.0 1.2E-05 2.6E-10 77.7 7.6 61 112-172 650-723 (818)
449 cd03286 ABC_MSH6_euk MutS6 hom 98.0 2.2E-05 4.8E-10 64.3 7.4 65 96-160 89-160 (218)
450 COG4637 Predicted ATPase [Gene 98.0 4.5E-05 9.7E-10 65.2 8.8 70 95-164 269-342 (373)
451 PF13175 AAA_15: AAA ATPase do 97.9 2.7E-05 5.9E-10 68.6 7.1 64 92-155 337-414 (415)
452 cd03287 ABC_MSH3_euk MutS3 hom 97.8 7.8E-05 1.7E-09 61.3 7.4 113 12-157 35-158 (222)
453 KOG0962|consensus 97.8 3.7E-05 8E-10 75.7 6.1 65 95-159 1182-1260(1294)
454 PRK06793 fliI flagellum-specif 97.8 0.00017 3.8E-09 64.6 9.8 139 2-172 151-301 (432)
455 PRK06067 flagellar accessory p 97.7 0.00022 4.8E-09 58.6 8.1 73 95-167 99-186 (234)
456 PRK08533 flagellar accessory p 97.6 0.00011 2.3E-09 60.7 5.8 71 96-167 95-184 (230)
457 COG1196 Smc Chromosome segrega 97.6 0.00015 3.3E-09 72.6 7.5 71 93-164 1063-1139(1163)
458 PRK13891 conjugal transfer pro 97.6 0.00017 3.7E-09 70.1 6.9 52 107-158 680-735 (852)
459 COG3910 Predicted ATPase [Gene 97.5 0.00056 1.2E-08 54.7 7.8 79 93-172 126-207 (233)
460 KOG0933|consensus 97.5 6.5E-05 1.4E-09 71.9 2.6 62 93-154 1079-1146(1174)
461 KOG0964|consensus 97.4 8.2E-05 1.8E-09 71.0 2.5 72 94-166 1095-1172(1200)
462 PRK07721 fliI flagellum-specif 97.4 0.00084 1.8E-08 60.5 8.4 147 2-173 153-334 (438)
463 cd01125 repA Hexameric Replica 97.3 0.00023 4.9E-09 58.8 4.2 44 110-154 107-160 (239)
464 PF13166 AAA_13: AAA domain 97.3 0.00097 2.1E-08 63.4 9.0 67 93-159 497-577 (712)
465 cd01120 RecA-like_NTPases RecA 97.1 0.0018 3.9E-08 49.0 7.0 62 96-157 67-141 (165)
466 COG1195 RecF Recombinational D 97.1 0.0017 3.6E-08 56.9 7.2 76 95-171 274-361 (363)
467 PRK05399 DNA mismatch repair p 96.8 0.0045 9.7E-08 60.3 7.7 79 78-161 652-737 (854)
468 PRK13873 conjugal transfer ATP 96.7 0.003 6.5E-08 61.2 6.2 47 111-157 632-682 (811)
469 TIGR02655 circ_KaiC circadian 96.7 9.4E-05 2E-09 67.5 -4.0 76 81-167 101-190 (484)
470 KOG0996|consensus 96.5 0.0023 5E-08 62.5 3.7 74 92-166 1191-1270(1293)
471 PRK13898 type IV secretion sys 96.4 0.0075 1.6E-07 58.4 6.8 49 110-158 638-690 (800)
472 TIGR00152 dephospho-CoA kinase 96.3 0.0019 4.1E-08 51.3 1.8 70 99-170 60-134 (188)
473 COG0497 RecN ATPase involved i 96.2 0.029 6.2E-07 51.8 9.0 73 95-168 430-508 (557)
474 PRK08699 DNA polymerase III su 96.2 0.007 1.5E-07 52.5 4.9 41 118-158 116-158 (325)
475 KOG0018|consensus 96.2 0.0084 1.8E-07 58.3 5.4 74 92-166 1047-1124(1141)
476 cd01131 PilT Pilus retraction 96.0 0.012 2.7E-07 47.2 5.0 56 106-166 66-121 (198)
477 TIGR02788 VirB11 P-type DNA tr 95.7 0.016 3.5E-07 49.8 4.6 77 104-189 208-287 (308)
478 PF13514 AAA_27: AAA domain 95.5 0.039 8.4E-07 55.4 7.2 65 93-157 1022-1096(1111)
479 COG3044 Predicted ATPase of th 94.7 0.26 5.7E-06 44.1 9.2 78 95-172 319-412 (554)
480 PRK14088 dnaA chromosomal repl 94.3 0.099 2.1E-06 47.3 5.9 62 113-174 193-260 (440)
481 COG4913 Uncharacterized protei 94.2 0.24 5.3E-06 47.0 8.1 75 95-169 989-1078(1104)
482 TIGR01070 mutS1 DNA mismatch r 94.1 0.15 3.3E-06 49.8 7.0 63 95-157 650-719 (840)
483 PRK04863 mukB cell division pr 93.7 0.054 1.2E-06 55.7 3.2 60 94-154 1363-1440(1486)
484 cd02023 UMPK Uridine monophosp 93.3 0.078 1.7E-06 42.2 3.1 52 75-130 63-114 (198)
485 smart00382 AAA ATPases associa 93.2 0.8 1.7E-05 32.6 8.2 59 94-152 58-125 (148)
486 PF09818 ABC_ATPase: Predicted 93.0 0.65 1.4E-05 41.9 8.6 78 94-171 320-416 (448)
487 PF00488 MutS_V: MutS domain V 93.0 0.47 1E-05 39.2 7.3 62 96-157 102-170 (235)
488 COG4694 Uncharacterized protei 92.7 0.26 5.6E-06 45.5 5.7 66 94-159 526-603 (758)
489 TIGR02903 spore_lon_C ATP-depe 92.2 0.34 7.3E-06 45.8 6.1 48 76-141 244-291 (615)
490 COG3593 Predicted ATP-dependen 92.2 0.25 5.4E-06 46.1 5.0 54 113-166 300-356 (581)
491 cd00561 CobA_CobO_BtuR ATP:cor 91.9 0.61 1.3E-05 36.3 6.2 64 105-168 84-154 (159)
492 TIGR01420 pilT_fam pilus retra 91.4 0.54 1.2E-05 41.1 6.1 45 105-153 186-230 (343)
493 PRK00454 engB GTP-binding prot 90.1 0.66 1.4E-05 36.3 5.1 62 76-142 127-192 (196)
494 PRK04296 thymidine kinase; Pro 90.1 2.7 6E-05 33.3 8.7 55 112-167 76-140 (190)
495 TIGR03881 KaiC_arch_4 KaiC dom 88.8 0.16 3.5E-06 41.3 0.7 54 114-167 121-188 (229)
496 COG4938 Uncharacterized conser 88.7 0.71 1.5E-05 39.5 4.4 55 105-159 251-308 (374)
497 PTZ00454 26S protease regulato 88.5 1.3 2.9E-05 39.5 6.3 52 106-157 230-298 (398)
498 PRK07414 cob(I)yrinic acid a,c 88.4 1.6 3.4E-05 34.7 6.0 67 103-169 102-175 (178)
499 TIGR03880 KaiC_arch_3 KaiC dom 87.7 1 2.2E-05 36.5 4.7 54 113-167 106-177 (224)
500 PRK12298 obgE GTPase CgtA; Rev 87.6 0.39 8.5E-06 42.8 2.3 68 93-164 255-329 (390)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-42 Score=274.55 Aligned_cols=175 Identities=25% Similarity=0.366 Sum_probs=151.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|+++.+|+-=. ++|||+| +.|+.+|++|+|..++ |+++|+|||+.+ +||.+|+.+|+...
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn--LFPHlTvleNv~la 101 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN--LFPHLTVLENVTLA 101 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccc--ccccchHHHHHHhh
Confidence 456789999995443 5999999 9999999999998754 457999999975 99999999998632
Q ss_pred ----cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 69 ----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 69 ----~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.+.++ +.+.++|+++||.+..+. +|.+|||||||||+|||||+.+|+++|+|||||+|||+...++++.++
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 24443 345678999999998886 789999999999999999999999999999999999999999999988
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|+|+|||++.|+.+++||+++|++|.+++ .|+++++
T Consensus 181 ~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie-~g~p~~~ 223 (240)
T COG1126 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE-EGPPEEF 223 (240)
T ss_pred HHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE-ecCHHHH
Confidence 76 5699999999999999999999999998876 4566554
No 2
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-39 Score=261.98 Aligned_cols=177 Identities=29% Similarity=0.353 Sum_probs=151.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+..|....+|+|=. ++|||+| |.|+++|++|+|+..+ ++++|++||... +|..+||+||+..
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA--LFssltV~eNVaf 108 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA--LFSSLTVFENVAF 108 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc--cccccchhHhhhe
Confidence 34567788888775 5999999 9999999999998643 457999999975 9999999999864
Q ss_pred ----hcCCCHHHH----HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 68 ----LFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 68 ----~~~~~~~~~----~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
....+++.+ ..-|+.+||.....++.|++|||||++|++||||++.+|+++++||||+||||.+...+-++|
T Consensus 109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence 224455444 345889999887334588999999999999999999999999999999999999999999888
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++ +.|+++||||++.+..+||+++++.+|++. +.|+++++.+
T Consensus 189 ~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 189 RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 765 679999999999999999999999999996 6899888764
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=264.46 Aligned_cols=162 Identities=25% Similarity=0.321 Sum_probs=139.9
Q ss_pred ccccCeeeeecCC-C-Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---C
Q psy2681 4 MCLKLRIAVLQGL-R-NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---L 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~-~-~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~---~ 71 (211)
+..|+-+++| |- . ++|||+| ++|+.+|++|+|...+ ...++|+||++. ++|++|+.+|+..... .
T Consensus 26 v~~GEfvsil-GpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~--LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 26 VEKGEFVAIL-GPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA--LLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc--ccchhhHHhhheehhhcccc
Confidence 4567788888 55 3 4999999 9999999999998754 347999999975 9999999999863221 1
Q ss_pred C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC
Q psy2681 72 P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ 143 (211)
Q Consensus 72 ~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~ 143 (211)
+ .+.+.++++.+||.+..++ +|++|||||||||+|||||+.+|++|||||||++||..++..+.+.+.+ .+
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~ 181 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence 1 3457889999999998876 7899999999999999999999999999999999999999888877754 36
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.||++||||++++...+|||++|.++
T Consensus 182 ~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 182 KTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 79999999999999999999999984
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=269.00 Aligned_cols=172 Identities=25% Similarity=0.361 Sum_probs=148.1
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|....+| |.- ++|||+| +.++.+|++|+|..++ |++||++||++. +....||.+|++
T Consensus 29 I~~GeI~GII-G~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn--LLssrTV~~NvA 105 (339)
T COG1135 29 IPKGEIFGII-GYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN--LLSSRTVFENVA 105 (339)
T ss_pred EcCCcEEEEE-cCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccc--ccccchHHhhhh
Confidence 4567778888 663 6999999 9999999999997643 568999999976 788899999986
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.++ .++.++++.+||+++.++ +|.+|||||||||+|||||+.+|++||+|||||+|||++.+.++++|
T Consensus 106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 106 FPLELAGVPKAEIKQRVAELLELVGLSDKADR-YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 42 34443 456789999999988776 78999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++. +.||++|||.|+.+.++|+|+.+|++|++++ .|+..+
T Consensus 185 ~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE-~G~v~~ 228 (339)
T COG1135 185 KDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE-EGTVSE 228 (339)
T ss_pred HHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE-eccHHH
Confidence 754 6799999999999999999999999999986 455433
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-38 Score=260.13 Aligned_cols=186 Identities=26% Similarity=0.303 Sum_probs=150.3
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+++..|.-+.+| |=+ ++|||+| +.|+++|.+|+|.... +.+||||||..........||.+.+...
T Consensus 25 l~v~~G~~~~ii-GPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 25 LSVEKGEITALI-GPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEcCCcEEEEE-CCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 345667777777 665 5999999 9999999999998643 2579999997643344567999988631
Q ss_pred c-----C----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 F-----N----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. + .+.+.+.++|+++|+.++.++ ++.+|||||+|||.|||||+++|++|+|||||+|+|+.++..+.++|
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1 1 124678899999999988875 89999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhhh
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLGE 191 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~~ 191 (211)
+++ +.||++||||+..+..++|+++.|+.+ +. ..|+.++..+ +.+...+.
T Consensus 183 ~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~-~~G~~~~~~~~~~l~~~~g 236 (254)
T COG1121 183 KELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LI-ASGPPEEVLTEENLEKAFG 236 (254)
T ss_pred HHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eE-eccChhhccCHHHHHHHhC
Confidence 876 579999999999999999999988654 43 3677766543 44444443
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=259.51 Aligned_cols=169 Identities=25% Similarity=0.368 Sum_probs=144.4
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+.-|.-..+|+-=. ++||++| |.++++|++|+|..++ |++|||+-|... +||.+|+.+|+...
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig--LFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG--LFPHLTVAENIATVPK 101 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc--cCCCccHHHHHHhhhh
Confidence 44566666773333 4999999 9999999999998653 678999999876 99999999998743
Q ss_pred -cCCCH----HHHHHHHHhCCCCC--ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~--~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.++++ ++++++++.+||+. +.+ ++|++|||||+|||.+||||+.+|+++|+||||++|||.++..+.+.+.+
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYAD-RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhh-cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 34443 45778999999975 555 58899999999999999999999999999999999999999998887754
Q ss_pred ----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeec
Q psy2681 142 ----YQGGVILVSHDERLIRETDCELWALEKKNIRKFN 175 (211)
Q Consensus 142 ----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~ 175 (211)
+++|||+||||++++.+++||+.+|++|+++.+.
T Consensus 181 lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 181 LQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred HHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC
Confidence 4789999999999999999999999999998764
No 7
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-39 Score=258.35 Aligned_cols=186 Identities=25% Similarity=0.348 Sum_probs=162.6
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
|.+-.|+-+.+| |.- ++|||+| +.|+..|++|+|..++ +.++||+||.+. +.+.++|.+|
T Consensus 25 l~I~~GE~VaiI-G~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n--Lv~r~sv~~N 101 (258)
T COG3638 25 LEINQGEMVAII-GPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN--LVPRLSVLEN 101 (258)
T ss_pred EEeCCCcEEEEE-CCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC--cccccHHHHH
Confidence 677889999999 764 6999999 9999999999997543 457999999976 8999999998
Q ss_pred HHhh-----------cCC-C---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 65 LMKL-----------FNL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 65 ~~~~-----------~~~-~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+... +++ + +..+.+.|+++|+.++... +.++|||||+|||+|||||+++|+++|.|||+++|||
T Consensus 102 Vl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp 180 (258)
T COG3638 102 VLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180 (258)
T ss_pred HHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccCh
Confidence 8521 122 1 2345678999999988876 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHHhhhh
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEA 192 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~ 192 (211)
.+.+.+++.|++. +.|+|++.|+++.+.++|+|++.|++|+++ |+|+.+++.++.++.+|..
T Consensus 181 ~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~~~~~~iYg~ 246 (258)
T COG3638 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTDEALDEIYGN 246 (258)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhHHHHHHHhcc
Confidence 9999999999865 579999999999999999999999999996 7999999888888888874
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-38 Score=255.22 Aligned_cols=171 Identities=21% Similarity=0.280 Sum_probs=148.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++.|+...+++-=. ++|||.+ ++|+.+|+.|+|..++ .+.|.+|||+|...+.|..|+.+.+....
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 56788888884333 5999999 9999999999998654 35699999999988999999988776433
Q ss_pred C---C--CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 N---L--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 ~---~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
. . ..+++.++++.+||.....++++.+|||||+||++|||||+.+|++||||||||+||+..+.++++++.+.
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~ 189 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK 189 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH
Confidence 2 2 23457889999999876666789999999999999999999999999999999999999999999999754
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKF 174 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~ 174 (211)
+.|+|+||||+..+..+|||+++|++|++++.
T Consensus 190 ~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 190 ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 56999999999999999999999999999874
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.4e-38 Score=262.09 Aligned_cols=185 Identities=25% Similarity=0.305 Sum_probs=154.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
+..|...++| |=+ ++|||+| ++|+++|.+|+|..++ .++++|+||.+. ..+.+||.|.+...
T Consensus 25 i~~G~i~~ii-GpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~--~~~~~tV~d~V~~GR 101 (258)
T COG1120 25 IPKGEITGIL-GPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS--APFGLTVYELVLLGR 101 (258)
T ss_pred ecCCcEEEEE-CCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC--CCCCcEEeehHhhcC
Confidence 3456778888 655 4999999 9999999999998654 357999999974 46678888877521
Q ss_pred ------cC-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 ------FN-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ------~~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+. .+ .+.+.++|+.+|+.+..++ ++.+|||||||||.|||||+++|++||||||||+||+.++.+++++
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l 180 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-cccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH
Confidence 11 12 2357788999999988875 8999999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCCh-HHHHHHHHHHhhhhh
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF-DDYREKLLTSLGEAM 193 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~-~~~~~~~~~~~~~~~ 193 (211)
++++ +.|||+|+||++.+.++||++++|++|+++. .|.+ +.+.++.++.+|..-
T Consensus 181 l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~evlT~e~l~~Vygv~ 239 (258)
T COG1120 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPEEVLTEENLREVYGVD 239 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcchhcCHHHHHHHhCCc
Confidence 9876 4699999999999999999999999999976 5655 456677788877643
No 10
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-37 Score=250.86 Aligned_cols=165 Identities=28% Similarity=0.389 Sum_probs=140.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|+-+.++ |=- ++|||++ +.|+.+|++|.+.... +..|||+||+.. +.+++|+.||
T Consensus 27 ~i~~Ge~vaI~-GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n--Ll~~ltv~EN 103 (226)
T COG1136 27 EIEAGEFVAIV-GPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN--LLPDLTVLEN 103 (226)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC--CCCCCCHHHH
Confidence 35667788888 543 5999999 9999999999987542 457999999975 8999999999
Q ss_pred HHh---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~---~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.. +.+.. ...+..+++.+|+.+...+++|.+|||||||||+|||||+.+|+++|+||||.+||..+.+.+++
T Consensus 104 v~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 104 VELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred HHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 863 22222 34567789999998776655899999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
++.+. +.|||+||||...+. .|||++.+++|++
T Consensus 184 ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 99765 569999999999886 7899999999985
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.5e-37 Score=260.22 Aligned_cols=175 Identities=31% Similarity=0.429 Sum_probs=149.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
+..|....++ |-+ ++|||+| ++|+++|++|+|...+ ++++||+||++. +++.+|+.|++..
T Consensus 28 i~~Gei~gll-G~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~--~~~~lT~~e~l~~~~~ 104 (293)
T COG1131 28 VEPGEIFGLL-GPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS--LYPELTVRENLEFFAR 104 (293)
T ss_pred EcCCeEEEEE-CCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCC--CCccccHHHHHHHHHH
Confidence 3456667777 555 5999999 9999999999998653 346999999986 8999999998753
Q ss_pred hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.. .+.++++++.+||.+..+ +++++||+||||||+||+||+++|+++||||||+||||.++..++++|+++
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKAN-KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhC-cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 34432 456889999999987554 589999999999999999999999999999999999999999999999876
Q ss_pred --C-CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --Q-GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~-~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+ .||+++||.+++++.+||++++|++|+++. .|+..++..
T Consensus 184 ~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~-~g~~~~l~~ 226 (293)
T COG1131 184 KEGGVTILLSTHILEEAEELCDRVIILNDGKIIA-EGTPEELKE 226 (293)
T ss_pred hCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHH
Confidence 3 599999999999999999999999999975 567766543
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-37 Score=257.01 Aligned_cols=174 Identities=25% Similarity=0.315 Sum_probs=147.8
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|+.+.+.+--. ++|||++ |+|++.|++|.|..+. .++|||+||+.. +|+.+||.+|+++..
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA--LF~HmtVa~NIAFGl 102 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA--LFPHMTVADNIAFGL 102 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh--hcccchHHhhhhhcc
Confidence 45677788884443 5999999 9999999999997543 357999999975 899999999997533
Q ss_pred C---------CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 N---------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 ~---------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. ..+.++.++|+.+.|+...++ ++.+|||||||||++||||+.+|++||||||+++||...+..+...|+
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr 181 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADR-YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 181 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhc-CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH
Confidence 1 123467789999999988775 789999999999999999999999999999999999999888887776
Q ss_pred h----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 N----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ ++.|.++||||.+++.+++||+++|++|+|.. .|++.+.
T Consensus 182 ~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~ev 225 (345)
T COG1118 182 KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDEV 225 (345)
T ss_pred HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHHH
Confidence 5 47799999999999999999999999999965 4666554
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-37 Score=251.58 Aligned_cols=176 Identities=30% Similarity=0.417 Sum_probs=147.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..+..+.++ |-+ ++|||++ ++|+++|++|+|..+. ++++||+||+|..++ ...||.+-+.+
T Consensus 26 ~i~~Ge~~~i~-G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~-~~~tV~~evaf 103 (235)
T COG1122 26 EIEKGERVLLI-GPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAF 103 (235)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccc-ccCcHHHHHhh
Confidence 34567788888 775 5999999 9999999999996432 467999999997554 45577776653
Q ss_pred h---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.+. +++.++++.+|+.+.+++ ++.+|||||||||+||.+|+.+|++||||||||+||+.++..++++++
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccC-CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 2 23333 456789999999988765 899999999999999999999999999999999999999999999998
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||++|||++++..+||++++|++|+++ +.|++.++.
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~ 227 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIF 227 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHh
Confidence 76 359999999999999999999999999996 467765544
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.4e-36 Score=257.08 Aligned_cols=176 Identities=26% Similarity=0.332 Sum_probs=149.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK-- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~-- 67 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|...+ +.++||+||++. +++.+|+.+++..
T Consensus 29 ~i~~Gei~gll-GpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~ 105 (306)
T PRK13537 29 HVQRGECFGLL-GPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN--LDPDFTVRENLLVFG 105 (306)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCc--CCCCCcHHHHHHHHH
Confidence 35667888888 554 5999999 9999999999997643 346999999975 7888999998753
Q ss_pred -hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 68 -LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 68 -~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.++... .++.++++.+++....++ +++.||||||||++||+||+++|+++||||||+|||+.++..++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 106 RYFGLSAAAARALVPPLLEFAKLENKADA-KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhcC-chhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 233332 345678999999876664 78999999999999999999999999999999999999999999999876
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++||+++++.++||++++|++|+++. .|+.+++.+
T Consensus 185 ~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~-~g~~~~l~~ 227 (306)
T PRK13537 185 LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA-EGAPHALIE 227 (306)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 5699999999999999999999999999964 677776643
No 15
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.2e-36 Score=256.71 Aligned_cols=177 Identities=25% Similarity=0.342 Sum_probs=149.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. +++.+|+.+++...
T Consensus 14 ~~i~~Ge~~~l~-G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~ 90 (302)
T TIGR01188 14 FKVREGEVFGFL-GPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--VDEDLTGRENLEMM 90 (302)
T ss_pred EEEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--CCCCCcHHHHHHHH
Confidence 456788889999 554 5999999 9999999999998643 236999999875 78889999987532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
++.. .+++.++++.+|+.+..++ ++.+|||||||||+||+||+++|++|||||||+|||+.++..++++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 91 GRLYGLPKDEAEERAEELLELFELGEAADR-PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169 (302)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhCC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 2322 2346789999999876664 7899999999999999999999999999999999999999999999987
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+ +.|||++||+++++.++||++++|++|+++. .|+.+++..
T Consensus 170 ~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l~~ 213 (302)
T TIGR01188 170 LKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEELKR 213 (302)
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHH
Confidence 5 5699999999999999999999999999874 677766544
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.8e-36 Score=259.53 Aligned_cols=174 Identities=24% Similarity=0.312 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.++.|..+.++ |-. ++|||++ |+|+++|++|+|..++ +++|||+||++. +++..|+.+|+
T Consensus 27 ~i~~Gei~gIi-G~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~--l~~~~tv~eni 103 (343)
T TIGR02314 27 HVPAGQIYGVI-GASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFN--LLSSRTVFGNV 103 (343)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcc--ccccCcHHHHH
Confidence 46778888999 554 5999999 9999999999997542 346999999975 78889999988
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.+. +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..++++
T Consensus 104 ~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l 182 (343)
T TIGR02314 104 ALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 642 22222 346788999999887765 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|++. +.|||++||+++.+.++||++++|++|+++. .|+..++
T Consensus 183 L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v 228 (343)
T TIGR02314 183 LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEI 228 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9764 5799999999999999999999999999975 5666554
No 17
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=254.09 Aligned_cols=167 Identities=25% Similarity=0.384 Sum_probs=141.7
Q ss_pred eeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 10 IAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
|-+|-|+- ++|||++ +.++++|++|+|...+ ++++++|||+.. ++|+.||.+|..+..
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev 133 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEV 133 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceee
Confidence 44455884 5999999 9999999999997542 567999999976 899999999986432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH----
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---- 140 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---- 140 (211)
+.+ .+++.++++.+||+++.++ ++.+|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.
T Consensus 134 ~Gv~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~ 212 (386)
T COG4175 134 QGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212 (386)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 333 3457789999999998886 789999999999999999999999999999999999977766666554
Q ss_pred hcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 141 NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 141 ~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++++||++||||++++.++.+||.+|++|+++. .|++++
T Consensus 213 ~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ-~Gtp~e 251 (386)
T COG4175 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ-VGTPEE 251 (386)
T ss_pred HhCCeEEEEecCHHHHHhccceEEEecCCeEEE-eCCHHH
Confidence 457899999999999999999999999999986 466554
No 18
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=245.27 Aligned_cols=175 Identities=26% Similarity=0.311 Sum_probs=146.1
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 21 ~~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~ 97 (235)
T cd03261 21 LDVRRGEILAII-GPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA--LFDSLTVFEN 97 (235)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc--cCCCCcHHHH
Confidence 356788899999 554 5999999 9999999999997532 235999999874 7788899998
Q ss_pred HHhh---c-CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 65 LMKL---F-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 65 ~~~~---~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
+... . ... ...+.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~ 176 (235)
T cd03261 98 VAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176 (235)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 7532 1 122 2345678999999876654 78999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 177 ~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEEL 224 (235)
T ss_pred HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHH
Confidence 999764 5699999999999999999999999999864 5666544
No 19
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-36 Score=236.74 Aligned_cols=177 Identities=21% Similarity=0.241 Sum_probs=153.0
Q ss_pred ccccccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 2 CQMCLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
|++.+|.+.++++== -++|||++ |+|+..|.+|+|+.++ .+-++++||+++ +|..+||.+|+....
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN--LFaHLtV~qNigLGl~ 97 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN--LFAHLTVAQNIGLGLS 97 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc--cchhhhhhhhhcccCC
Confidence 788899999999333 26999999 9999999999998753 345999999975 999999999985321
Q ss_pred ------CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 ------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 ------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
...++++..++.++|+.++.++ .+.+|||||||||+|||+|+.+.+|++|||||++|||.-+.++..++.+.
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~R-LP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKR-LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhh-CccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 1235667889999999998875 78999999999999999999999999999999999999999999988765
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|++||||+.+.+.+++++++++.+|++. +.|+..++.
T Consensus 177 ~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~ 218 (231)
T COG3840 177 DERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELL 218 (231)
T ss_pred HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHh
Confidence 569999999999999999999999999996 577766654
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-36 Score=259.91 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=148.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
++..|..+.+++--. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~ 103 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYA--LYPHMSVRENMAYGLKI 103 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--ccCCCCHHHHHHhHHhh
Confidence 356788888884443 5999999 9999999999997653 246999999975 899999999986432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.+ ..++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDR-KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2346789999999887765 78999999999999999999999999999999999999999999888754
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..+||++++|++|+++. .|+++++.
T Consensus 183 ~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~~ 223 (356)
T PRK11650 183 RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEVY 223 (356)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHH
Confidence 5799999999999999999999999999975 56766553
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=259.10 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=147.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-- 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~-- 70 (211)
+..|+-+.+++-=. ++||+|+ |+|+..|++|+|..++ ++.||+|||+.. +||.+||.+|+.+...
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA--LFPHltV~~NVafGLk~~ 105 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYA--LFPHMTVEENVAFGLKVR 105 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcc--cCCCCcHHHHhhhhhhhc
Confidence 34556667773333 4999999 9999999999998653 567999999975 9999999999874322
Q ss_pred --CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH----
Q psy2681 71 --LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---- 140 (211)
Q Consensus 71 --~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---- 140 (211)
.. .+++.++++.++++++.++ ++.+|||||||||+|||||+.+|++||||||.++||..-+..+...++
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R-~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhh-ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 12 2367889999999998876 789999999999999999999999999999999999988877766665
Q ss_pred hcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 141 NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 141 ~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.+.|.|+||||.+++..++|||++|++|++.. .|+++++..
T Consensus 185 ~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q-~gtP~eiY~ 226 (352)
T COG3842 185 ELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ-VGTPEEIYE 226 (352)
T ss_pred hcCCeEEEEECCHHHHhhhccceEEccCCceee-cCCHHHHhh
Confidence 457899999999999999999999999999975 577666543
No 22
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.4e-35 Score=258.60 Aligned_cols=174 Identities=25% Similarity=0.360 Sum_probs=147.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..++ +..++|+||++. +++.+|+.+|
T Consensus 15 ~i~~Gei~~l~-G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--l~~~~TV~eN 91 (363)
T TIGR01186 15 AIAKGEIFVIM-GLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--LFPHMTILQN 91 (363)
T ss_pred EEcCCCEEEEE-CCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc--CCCCCCHHHH
Confidence 35678888888 554 5999999 9999999999997543 347999999875 8899999999
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+||+.+.++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~ 170 (363)
T TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD 170 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 8632 2232 2456789999999877765 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.++ +.|||+||||++++.++||++++|++|+++. .|+++++
T Consensus 171 ~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei 217 (363)
T TIGR01186 171 ELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEI 217 (363)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHH
Confidence 98754 5799999999999999999999999999875 5666554
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.5e-36 Score=234.93 Aligned_cols=159 Identities=29% Similarity=0.414 Sum_probs=138.3
Q ss_pred ecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CCC
Q psy2681 13 LQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP 72 (211)
Q Consensus 13 i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~~ 72 (211)
+.|.- ++|||+| |.+..+|++|+|+.+. +++||+|||+.. +.+..|++||++... +.+
T Consensus 33 l~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r--LL~~~tvyeNVA~pL~v~G~~ 110 (223)
T COG2884 33 LTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR--LLPDRTVYENVALPLRVIGKP 110 (223)
T ss_pred EECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc--ccccchHhhhhhhhhhccCCC
Confidence 34653 5999999 9999999999998542 678999999975 889999999987432 222
Q ss_pred ----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 73 ----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 73 ----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
.+++.++|+.+||.+.... .|.+|||||||||+||||++++|++||.||||.+|||.....+++++.++ |.|
T Consensus 111 ~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 111 PREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred HHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence 3456789999999987775 78999999999999999999999999999999999999999999988765 679
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCceeee
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNIRKF 174 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i~~~ 174 (211)
|+++|||.+.+..+..|++.+++|+++..
T Consensus 190 Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 190 VLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred EEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999999999754
No 24
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=238.26 Aligned_cols=181 Identities=26% Similarity=0.371 Sum_probs=150.7
Q ss_pred eeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hcCCCH
Q psy2681 10 IAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY 73 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~~~~ 73 (211)
|.-+.|.+ ++||+++ |++++.|++|.|..++ +++||.++.... +|..+|+.||+.. +++...
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~g--lY~RlT~rEnl~~Fa~L~~l~~ 107 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERG--LYARLTARENLKYFARLNGLSR 107 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcC--hhhhhhHHHHHHHHHHHhhhhh
Confidence 34444776 5999999 9999999999998642 568999996544 8999999998864 344433
Q ss_pred ----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeE
Q psy2681 74 ----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV 146 (211)
Q Consensus 74 ----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ti 146 (211)
.+..++.+.|++.++.++ ++.+||.||||||+|||||+++|++++|||||||||..+...+.+++++. +.+|
T Consensus 108 ~~~kari~~l~k~l~l~~~~~r-Rv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~v 186 (245)
T COG4555 108 KEIKARIAELSKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186 (245)
T ss_pred hHHHHHHHHHHHHhChHHHHHH-HHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEE
Confidence 456678999999999886 78999999999999999999999999999999999999999999999876 5699
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH-HHHHhhhhhh
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK-LLTSLGEAMV 194 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~-~~~~~~~~~~ 194 (211)
|++||++.+++.+||+++++++|.++ +.|+.+.+... ..+.+..+|.
T Consensus 187 iFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~~~~~le~~f~ 234 (245)
T COG4555 187 IFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDARTVLRNLEEIFA 234 (245)
T ss_pred EEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHHhhcCHHHHHH
Confidence 99999999999999999999999997 57888776543 3444444443
No 25
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-36 Score=257.38 Aligned_cols=170 Identities=24% Similarity=0.335 Sum_probs=143.5
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CC
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL 71 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~ 71 (211)
|+-+-++ |=. ++||||| |+|+..|++|+|...+ .+.|++|||+.. +||.+||++|+.... +.
T Consensus 29 Gef~vll-GPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA--LyPhmtV~~Niaf~Lk~~~~ 105 (338)
T COG3839 29 GEFVVLL-GPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA--LYPHMTVYENIAFGLKLRGV 105 (338)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCcc--ccCCCcHHHHhhhhhhhCCC
Confidence 4445555 442 4999999 9999999999998643 457999999975 999999999997432 22
Q ss_pred C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC
Q psy2681 72 P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ 143 (211)
Q Consensus 72 ~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~ 143 (211)
+ .++++++.+.+++++++++ ++.+|||||||||+||||++.+|+++|||||+|+||...+..+...|++ ++
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~ 184 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG 184 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC
Confidence 2 4567889999999999886 7899999999999999999999999999999999999998887777765 46
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|+|+||||..++..++|++++|++|++... |++.++
T Consensus 185 ~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~-g~p~el 221 (338)
T COG3839 185 TTTIYVTHDQVEAMTLADRIVVMNDGRIQQV-GTPLEL 221 (338)
T ss_pred CcEEEEcCCHHHHHhhCCEEEEEeCCeeeec-CChHHH
Confidence 7999999999999999999999999999764 555544
No 26
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.5e-36 Score=242.94 Aligned_cols=166 Identities=26% Similarity=0.382 Sum_probs=140.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~ 102 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR--LLSDRTVYDNVA 102 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc--ccccccHHHHHH
Confidence 466788888884443 5999999 9999999999997643 136899999874 778889999875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 103 FPLRIIGVPPRDANERVSAALEKVGLEGKAHA-LPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 32 1222 2356788999999877664 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+++ +.|||+||||++++..+||++++|++|++
T Consensus 182 ~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 876 57999999999999999999999999864
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.2e-35 Score=255.91 Aligned_cols=177 Identities=25% Similarity=0.285 Sum_probs=149.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
++..|..+.+++--. ++|||++ |+|+++|++|+|..++ +..+||+||++. +++.+|+.+++..
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~~ 140 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN--LDLEFTVRENLLVFGR 140 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc--CCCCCcHHHHHHHHHH
Confidence 467788899994443 5999999 9999999999998643 346999999875 7788999998753
Q ss_pred hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.. ...+.++++.+++.+..++ ++.+|||||||||+||+||+++|+++||||||+|||+.++..++++|+++
T Consensus 141 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~-~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 141 YFGMSTREIEAVIPSLLEFARLESKADA-RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhCC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 23332 2345678999999877665 78999999999999999999999999999999999999999999999875
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++||+++++.++||++++|++|+++ +.|+.+++.+
T Consensus 220 ~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 261 (340)
T PRK13536 220 ARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALID 261 (340)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 579999999999999999999999999986 4677776643
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.4e-35 Score=256.84 Aligned_cols=176 Identities=23% Similarity=0.298 Sum_probs=149.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
++..|..+.+++--. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~ 103 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPNLTVADNIAYGLKN 103 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCcHHHHHHHHHHh
Confidence 456788888884333 5999999 9999999999998643 346999999975 899999999986432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.+ ..++.++++.+||++..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~-~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERK-YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2457789999999987765 78999999999999999999999999999999999999999999988764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..+||++++|++|+++. .|+.+++.
T Consensus 183 ~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~g~~~~~~ 223 (353)
T TIGR03265 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-VGTPQEIY 223 (353)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 56665543
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-35 Score=256.06 Aligned_cols=176 Identities=22% Similarity=0.314 Sum_probs=148.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..+. ++++||+||++. +|+.+|+.+|+....
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA--LFPHMSLGENVGYGLKM 105 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCCHHHHHHHHHhH
Confidence 356678888884443 5999999 9999999999997643 357999999975 899999999987432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.|+++
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r-~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDR-YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2456789999999887765 78999999999999999999999999999999999999999999988754
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..+||++++|++|+++. .|+++++.
T Consensus 185 ~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~ 225 (351)
T PRK11432 185 QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELY 225 (351)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 56766543
No 30
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.2e-35 Score=250.67 Aligned_cols=176 Identities=25% Similarity=0.299 Sum_probs=147.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||++|++. +++.+|+.+++..
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~ 103 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN--LDPEFTVRENLLVFGR 103 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecccc--CCcCCcHHHHHHHHHH
Confidence 467788999994443 5999999 9999999999997643 346999999875 6788999998753
Q ss_pred hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++... ..+.++++.+++.+..++ ++.+|||||||||+||+||+.+|+++||||||+|||+.++..+++.|+++
T Consensus 104 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 104 YFGMSTREIEAVIPSLLEFARLESKADV-RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 222322 245678999999876664 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 183 ~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 223 (303)
T TIGR01288 183 ARGKTILLTTHFMEEAERLCDRLCVLESGRKIA-EGRPHALI 223 (303)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 5799999999999999999999999999864 57766653
No 31
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-35 Score=239.16 Aligned_cols=167 Identities=28% Similarity=0.363 Sum_probs=140.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++...
T Consensus 22 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 22 TVEPGEFLALL-GPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA--LFPHLTVAENIAFGLK 98 (213)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchh--hccCCcHHHHHHhHHH
Confidence 35567888888 654 5999999 9999999999997643 236999999875 67788999987532
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.. .+.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 177 (213)
T cd03259 99 LRGVPKAEIRARVRELLELVGLEGLLNR-YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 2346778999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++||++++|++|+++.
T Consensus 178 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 178 RELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 5699999999999999999999999998853
No 32
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.2e-35 Score=240.76 Aligned_cols=174 Identities=28% Similarity=0.371 Sum_probs=145.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++..
T Consensus 22 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~~~l~~ 98 (236)
T cd03219 22 SVRPGEIHGLI-GPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR--LFPELTVLENVMV 98 (236)
T ss_pred EecCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc--cccCCCHHHHHHH
Confidence 46778889999 554 5999999 9999999999997542 235999999875 7888899998753
Q ss_pred hc---CC----------C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 68 LF---NL----------P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 68 ~~---~~----------~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.. .. . .+.+.++++.+|++...++ ++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 177 (236)
T cd03219 99 AAQARTGSGLLLARARREEREARERAEELLERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177 (236)
T ss_pred HHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 21 11 0 2245678999999876664 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++..+||++++|++|+++. .++.+++
T Consensus 178 ~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (236)
T cd03219 178 ETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEV 230 (236)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHHHh
Confidence 999999999765 4699999999999999999999999999864 5665544
No 33
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.2e-35 Score=236.19 Aligned_cols=167 Identities=26% Similarity=0.326 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|..+. +..++|++|++.. .+...|+.+++....
T Consensus 22 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~-~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 22 DLYAGEIIALT-GKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDY-QLFTDSVREELLLGLKE 99 (205)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhh-hhhhccHHHHHhhhhhh
Confidence 35667888888 554 5999999 9999999999997654 2369999998631 233569999885321
Q ss_pred -CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
.....++.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (205)
T cd03226 100 LDAGNEQAETVLKDLDLYALKER-HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178 (205)
T ss_pred cCccHHHHHHHHHHcCCchhcCC-CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 2223467889999999877664 78999999999999999999999999999999999999999999999876 569
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
||++|||++++..+||++++|++|+++
T Consensus 179 ii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 179 VIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999863
No 34
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-35 Score=240.05 Aligned_cols=174 Identities=24% Similarity=0.278 Sum_probs=144.8
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK-- 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~-- 67 (211)
+.++.|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~ 98 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS--VDDELTGWENLYIHA 98 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCcc--ccccCcHHHHHHHHH
Confidence 4567788899994443 5999999 9999999999997643 236999999874 6778899988753
Q ss_pred -hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 68 -LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 68 -~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.++.. .+.+.++++.+++.+..++ ++.+||||||||++||+|++.+|+++||||||+|||+.++..+.+.|.++
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 99 RLYGVPGAERRERIDELLDFVGLLEAADR-LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 22222 2346788999999876654 78999999999999999999999999999999999999999999998764
Q ss_pred ----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 143 ----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 143 ----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
+.|||++|||++++..+|+++++|++|+++. .++.+
T Consensus 178 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 217 (220)
T cd03265 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPE 217 (220)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChH
Confidence 5699999999999999999999999999864 45543
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6e-35 Score=254.96 Aligned_cols=176 Identities=20% Similarity=0.270 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCc--ceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNK--GELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~--G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++ |+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~--l~p~~tv~enl~~~l 104 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYA--LFPHLKVEDNVAFGL 104 (362)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcc--cCCCCcHHHHHHHHH
Confidence 356677888884333 5999999 999999999 9997643 246999999975 899999999986422
Q ss_pred ---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 70 ---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 70 ---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+.+ ..++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 105 RAQKMPKADIAERVADALKLVGLGDAAAH-LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 222 2356789999999987765 88999999999999999999999999999999999999999999988653
Q ss_pred -----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 -----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 -----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 184 ~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~ 227 (362)
T TIGR03258 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALY 227 (362)
T ss_pred HHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 5699999999999999999999999999975 57766554
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.5e-35 Score=254.10 Aligned_cols=175 Identities=26% Similarity=0.293 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+++.|..+.+++--. ++|||++ |+|+++|++|+|..++ ++.++|+||++. +++.+|+.+|+....
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~--l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA--LFRHMTVFDNIAFGLTV 101 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCcHHHHHHhhhhh
Confidence 456788888884443 5999999 9999999999997643 246999999975 889999999986421
Q ss_pred -----CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 -----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 -----~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
..+ .+++.++++.+++++..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 102 LPRRERPNAAAIKAKVTQLLEMVQLAHLADR-YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 112 2356789999999887765 789999999999999999999999999999999999999999999887
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 181 ~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i 224 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQV 224 (353)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 64 5699999999999999999999999999975 5666654
No 37
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-35 Score=240.70 Aligned_cols=177 Identities=23% Similarity=0.284 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~ 100 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN--LIERLSVLENVL 100 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCc--ccccCcHHHHHH
Confidence 456788888884443 5999999 9999999999997542 235999999875 677889999875
Q ss_pred hhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 67 KLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 67 ~~~-----------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
... +. ..+.+.++++.+++....++ ++.+|||||||||+||||++.+|+++||||||+|||+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179 (241)
T ss_pred hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 211 11 12346678999999876654 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 132 IDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 132 ~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+..+.+.|+++ +.|||++|||++++..+||++++|.+|+++. .++.+++.+
T Consensus 180 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 234 (241)
T cd03256 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAELTD 234 (241)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHhhH
Confidence 99999999764 5699999999999999999999999999864 577666543
No 38
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1e-34 Score=248.03 Aligned_cols=177 Identities=25% Similarity=0.375 Sum_probs=150.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|...+ +..+||+||++. +++.+|+.+++..
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~--l~~~~tv~e~l~~~~~ 101 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP--LYLDMYVREYLQFIAG 101 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCC--CCCCCcHHHHHHHHHH
Confidence 456788888884443 5999999 9999999999997643 246999999875 7888999998753
Q ss_pred hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.. .+.+.++++.+|+.+..++ +++.||||||||++||+||+++|+++||||||+|||+.++..+++.|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcC-chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 23333 2456789999999877664 78999999999999999999999999999999999999999999999887
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++||+++++.++||++++|++|+++ +.|+.+++..
T Consensus 181 ~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 181 KDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred CCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 569999999999999999999999999997 4688777644
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.2e-35 Score=255.07 Aligned_cols=174 Identities=23% Similarity=0.324 Sum_probs=147.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+..|..+.++ |-. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 37 i~~Ge~~~Ll-GpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 37 INNGEFLTLL-GPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYA--LFPHMTVFENVAFGLRM 113 (375)
T ss_pred EeCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCCHHHHHHHHHhh
Confidence 4567788888 554 5999999 9999999999997543 346999999975 899999999986422
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.+ ..++.++++.+|+++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQR-KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 222 2346788999999987775 78999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..++|++++|++|+++. .|++.++.
T Consensus 193 ~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~i~ 233 (375)
T PRK09452 193 KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ-DGTPREIY 233 (375)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 46665543
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-35 Score=252.47 Aligned_cols=174 Identities=23% Similarity=0.326 Sum_probs=147.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
++..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ +..+||+||++. +++.+|+.+++
T Consensus 27 ~i~~Gei~~ii-G~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~--l~~~~tv~eni 103 (343)
T PRK11153 27 HIPAGEIFGVI-GASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN--LLSSRTVFDNV 103 (343)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc--cCCCCcHHHHH
Confidence 46778889999 664 5999999 9999999999997542 246999999875 78889999988
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+... +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~ 182 (343)
T PRK11153 104 ALPLELAGTPKAEIKARVTELLELVGLSDKADR-YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 532 23222 346778999999877664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++
T Consensus 183 L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~ 228 (343)
T PRK11153 183 LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEV 228 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9865 5699999999999999999999999999864 5665554
No 41
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-35 Score=237.70 Aligned_cols=167 Identities=26% Similarity=0.307 Sum_probs=141.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++... .+
T Consensus 26 ~i~~G~~~~i~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 26 SVEEGEFVALV-GPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDA--LLPWLTVLDNVALGLELQG 102 (220)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccc--cccCCCHHHHHHHHHHHcC
Confidence 46678888888 554 5999999 9999999999998643 346999999875 67778999987532 22
Q ss_pred CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 71 LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 71 ~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
.. .+.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|+++
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 103 VPKAEARERAEELLELVGLSGFENA-YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 22 2346788999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEe--CCceee
Q psy2681 143 QGGVILVSHDERLIRETDCELWALE--KKNIRK 173 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~--~g~i~~ 173 (211)
+.|||++|||++++..+||++++|+ +|+++.
T Consensus 182 ~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 182 GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 5699999999999999999999999 688764
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=254.33 Aligned_cols=174 Identities=19% Similarity=0.250 Sum_probs=146.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. ++.+||+||++. +++.+|+.+++....
T Consensus 25 ~i~~Ge~~~l~-G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~--l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 25 DIHEGEFVVFV-GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYA--LYPHLSVAENMSFGLK 101 (369)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcc--cCCCCCHHHHHHhHHh
Confidence 45667888888 554 5999999 9999999999997643 246999999975 788999999986421
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~lgL~~~~~~-~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~ 180 (369)
T PRK11000 102 LAGAKKEEINQRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (369)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 222 2346788999999877664 78999999999999999999999999999999999999999999888764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 181 ~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~~~i 221 (369)
T PRK11000 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 221 (369)
T ss_pred HHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 5799999999999999999999999999975 5666654
No 43
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=8.6e-35 Score=240.89 Aligned_cols=176 Identities=24% Similarity=0.304 Sum_probs=145.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++.+|+.+++
T Consensus 24 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l 100 (243)
T TIGR02315 24 NINPGEFVAII-GPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYN--LIERLTVLENV 100 (243)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCc--ccccccHHHHH
Confidence 35677888888 554 5999999 9999999999997542 235999999875 67788999987
Q ss_pred Hhhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 66 MKLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 66 ~~~~-----------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.... +. ..+++.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 179 (243)
T TIGR02315 101 LHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179 (243)
T ss_pred hhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 5211 00 12346778999999876664 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.+
T Consensus 180 ~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 235 (243)
T TIGR02315 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAPSELDD 235 (243)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCHHHhCh
Confidence 999999999765 5699999999999999999999999999864 577665533
No 44
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=262.34 Aligned_cols=178 Identities=35% Similarity=0.623 Sum_probs=153.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---------
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------- 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--------- 70 (211)
.+..|.|+.+| |-+ ++|||+| |+|...|++|+|......+++|++|++. +++..|+.+.+.....
T Consensus 25 ~~~~G~riGLv-G~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 25 TLNPGERIGLV-GRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred eeCCCCEEEEE-CCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cCCCccHHHHHHhhhHHHHHHHHHH
Confidence 35678999999 665 5999999 9999999999999888789999999975 5667788776532100
Q ss_pred ------C----------------------CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeC
Q psy2681 71 ------L----------------------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122 (211)
Q Consensus 71 ------~----------------------~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDE 122 (211)
. .+.++..++..+|+... + +++++||||||.||+||+||+.+|++|||||
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~-~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDE 179 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D-RPVSSLSGGWRRRVALARALLEEPDLLLLDE 179 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c-CchhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 01345567888999876 4 4899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHH
Q psy2681 123 PTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185 (211)
Q Consensus 123 Pt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~ 185 (211)
|||+||.++..|+.++|+++.+|+|+||||.+|+.++|++|+.+++|++..|.|+|+.|.+..
T Consensus 180 PTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 180 PTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred CCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHH
Confidence 999999999999999999998899999999999999999999999999999999999886543
No 45
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.2e-35 Score=235.57 Aligned_cols=167 Identities=29% Similarity=0.383 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||++ ++|+.+|++|+|..+. +..++|++|++. +++..|+.+++...
T Consensus 22 ~i~~G~~~~i~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 98 (208)
T cd03268 22 HVKKGEIYGFL-GPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPG--FYPNLTARENLRLLAR 98 (208)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCc--cCccCcHHHHHHHHHH
Confidence 45677888888 554 5999999 9999999999998754 235999999864 67889999987532
Q ss_pred -cCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC
Q psy2681 69 -FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG 144 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ 144 (211)
+.....++.++++.+++.+..++ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|+++ +.
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 177 (208)
T cd03268 99 LLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI 177 (208)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHhh-hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 23345567889999999876664 78999999999999999999999999999999999999999999999764 57
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|||++|||++++.++||++++|++|+++.
T Consensus 178 tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 178 TVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred EEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999863
No 46
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=254.04 Aligned_cols=176 Identities=22% Similarity=0.316 Sum_probs=146.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
++..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCc--cCCCCCHHHHHHHHHHH
Confidence 456778888884443 5999999 9999999999997643 346999999975 899999999986422
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh---
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--- 141 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~--- 141 (211)
+.+ .+++.++++.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~-~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKR-KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2356788999999887765 7899999999999999999999999999999999999999988866654
Q ss_pred -cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 -YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 -~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+.|+|+||||.+++..++|++++|++|+++. .|+.+++.
T Consensus 198 ~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~~~ 238 (377)
T PRK11607 198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPEEIY 238 (377)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHHHHH
Confidence 46799999999999999999999999999975 56665543
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=238.95 Aligned_cols=175 Identities=25% Similarity=0.279 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~ 101 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYA--LFRHMTVFDNVAFGLRV 101 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCc--ccCCCCHHHHHhhhhhh
Confidence 467788888994443 5999999 9999999999997643 236999999875 67788999987532
Q ss_pred cCC----C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 69 FNL----P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 69 ~~~----~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
... . .+.+.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 102 KPRSERPPEAEIRAKVHELLKLVQLDWLADR-YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred ccccccCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 111 1 1345678999999876654 789999999999999999999999999999999999999999999997
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++.+.++||++++|++|+++. .++.+++
T Consensus 181 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 224 (239)
T cd03296 181 RLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEV 224 (239)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 64 5699999999999999999999999999864 5665554
No 48
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=235.69 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=142.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
+++..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++.+|+.+++.....
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~ 96 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN--LFAHLTVEQNVGLGLS 96 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc--cCCCCcHHHHHhcccc
Confidence 4567788899994443 5999999 9999999999997643 235999999875 6788899998853211
Q ss_pred ----C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 71 ----L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 71 ----~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. ....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKR-LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred cccCccHHHHHHHHHHHHHcCCHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1 13356788999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++||++++|++|+++.
T Consensus 176 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 5699999999999999999999999999853
No 49
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.2e-34 Score=254.19 Aligned_cols=175 Identities=24% Similarity=0.296 Sum_probs=148.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------------CeEEEEEeCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------------RLRIGKFDQHSGEHLFPDD 59 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~ 59 (211)
+++..|....++ |.. ++|||++ |+|+++|++|+|..++ +.+++|+||++. +++..
T Consensus 45 f~i~~Gei~~I~-G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~--l~p~~ 121 (382)
T TIGR03415 45 LDIEEGEICVLM-GLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA--LMPWL 121 (382)
T ss_pred EEEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc--CCCCC
Confidence 456778888888 664 5999999 9999999999997643 136999999975 78889
Q ss_pred CHHHHHHhhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 60 TPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 60 t~~e~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
|+.+|+.... +.. ..++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 122 Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 122 TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 9999986321 222 2356789999999877665 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.+.|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei 252 (382)
T TIGR03415 201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEI 252 (382)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9999998754 5799999999999999999999999999975 5676655
No 50
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=255.40 Aligned_cols=183 Identities=22% Similarity=0.277 Sum_probs=151.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++++||++|++. +++.+|+.+++...
T Consensus 25 ~i~~Geiv~li-GpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~--l~~~~tv~e~v~~~ 101 (402)
T PRK09536 25 SVREGSLVGLV-GPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS--LSFEFDVRQVVEMG 101 (402)
T ss_pred EECCCCEEEEE-CCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC--CCCCCCHHHHHHhc
Confidence 46778889999 655 5999999 9999999999997543 346999999875 67789999987531
Q ss_pred c-------C-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-------N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-------~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. . .. .+.+.++++.+|+.+..++ ++.+||||||||++|||||+++|++|||||||+|||+.++..+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~ 180 (402)
T PRK09536 102 RTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180 (402)
T ss_pred cchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 1 1 11 2356789999999877664 899999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhh
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLG 190 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~ 190 (211)
+|+++ +.|||++|||++++.++|+++++|++|+++. .|+.+++.. ..+...+
T Consensus 181 lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~~~~~l~~~~ 236 (402)
T PRK09536 181 LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVLTADTLRAAF 236 (402)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHhCcHHHHHHh
Confidence 99875 4699999999999999999999999999975 677776543 3444444
No 51
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.4e-34 Score=235.32 Aligned_cols=165 Identities=27% Similarity=0.351 Sum_probs=136.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--- 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--- 70 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++........|+.+++.....
T Consensus 21 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~ 99 (213)
T cd03235 21 EVKPGEFLAIV-GPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHK 99 (213)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccc
Confidence 45678888888 554 5999999 9999999999998765 346999999875211234799998753211
Q ss_pred -----C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 71 -----L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 71 -----~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
. ..+.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 100 GLFRRLSKADKAKVDEALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHHhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 12346778999999866654 78999999999999999999999999999999999999999999999875
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.|||++|||++++.++||++++|++|
T Consensus 179 ~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 179 RREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 469999999999999999999999875
No 52
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=253.48 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=146.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..+||++|++. +++.+|+.++
T Consensus 50 ~i~~Gei~~Lv-G~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~~~Tv~en 126 (400)
T PRK10070 50 AIEEGEIFVIM-GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMPHMTVLDN 126 (400)
T ss_pred EEcCCCEEEEE-CCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCCCCCHHHH
Confidence 56778888888 665 5999999 9999999999997542 136999999875 7888999998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~ 205 (400)
T PRK10070 127 TAFGMELAGINAEERREKALDALRQVGLENYAHS-YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQD 205 (400)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 8632 2222 2346778999999877665 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 206 ~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~~l 252 (400)
T PRK10070 206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPDEI 252 (400)
T ss_pred HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHHHH
Confidence 98754 5699999999999999999999999999864 5665554
No 53
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.8e-34 Score=249.37 Aligned_cols=176 Identities=19% Similarity=0.279 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +.+++|+||++...+++.+|+.+++.
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHH
Confidence 467788899994443 5999999 9999999999997532 24699999997434788899999875
Q ss_pred hh---c--CCCH----HHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 67 KL---F--NLPY----EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 67 ~~---~--~~~~----~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. + +... +.+.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|++||+||||++||+.++..+.
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~-~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~ 201 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 31 1 2232 34567899999954 444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++|+++ +.|+|+||||++++.++||++++|.+|++++ .|+.++
T Consensus 202 ~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~g~~~~ 248 (331)
T PRK15079 202 NLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-LGTYDE 248 (331)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 998764 5699999999999999999999999999975 455544
No 54
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-34 Score=234.22 Aligned_cols=166 Identities=27% Similarity=0.367 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..+ ++.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 22 ~i~~g-~~~i~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~ 97 (211)
T cd03264 22 TLGPG-MYGLL-GPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG--VYPNFTVREFLDYIA 97 (211)
T ss_pred EEcCC-cEEEE-CCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCc--ccccCCHHHHHHHHH
Confidence 34556 77777 664 5999999 9999999999998654 346999999875 67788999887531
Q ss_pred --cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.. .+.+.++++.+|+.+..+. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 98 WLKGIPSKEVKARVDEVLELVNLGDRAKK-KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCHHHHhC-chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 2222 2346778999999876654 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++++++++|++|+++.
T Consensus 177 ~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 4799999999999999999999999998863
No 55
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-34 Score=235.93 Aligned_cols=164 Identities=29% Similarity=0.393 Sum_probs=137.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.++
T Consensus 26 ~i~~G~~~~l~-G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~ 102 (218)
T cd03255 26 SIEKGEFVAIV-GPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN--LLPDLTALEN 102 (218)
T ss_pred EEcCCCEEEEE-cCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc--cCCCCcHHHH
Confidence 35677888888 554 5999999 9999999999997532 236999999875 6788899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+.+.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 181 (218)
T cd03255 103 VELPLLLAGVPKKERRERAEELLERVGLGDRLNH-YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181 (218)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH
Confidence 7532 2222 2356789999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.|+++ +.|||+||||++++. +||++++|++|++
T Consensus 182 ~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 182 LLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99865 469999999999997 9999999999863
No 56
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=240.48 Aligned_cols=168 Identities=26% Similarity=0.270 Sum_probs=142.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY 73 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~ 73 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|.... +..++|++|++. +++..|+.+++.... ....
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR--LLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc--CCCCCcHHHHHHhcccchHH
Confidence 456788888884443 5999999 9999999999997643 346999999874 677789999986422 1124
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEE
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiiv 149 (211)
.++.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||+|
T Consensus 112 ~~~~~~l~~~gl~~~~~~-~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviiv 190 (257)
T PRK11247 112 DAALQALAAVGLADRANE-WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190 (257)
T ss_pred HHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 567789999999876664 78999999999999999999999999999999999999999999998764 5799999
Q ss_pred ecChHHHHhhCCeEEEEeCCceee
Q psy2681 150 SHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|||++++..+|+++++|++|+++.
T Consensus 191 sHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 191 THDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999864
No 57
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=250.22 Aligned_cols=175 Identities=23% Similarity=0.321 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..+. ++.++|+||++. +++.+|+.++
T Consensus 20 ~i~~Ge~~~l~-G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~en 96 (352)
T PRK11144 20 TLPAQGITAIF-GRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR--LFPHYKVRGN 96 (352)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcc--cCCCCcHHHH
Confidence 45678888888 554 5999999 9999999999997432 246999999875 7889999999
Q ss_pred HHhhc-CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 65 LMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 65 ~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.... ....+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|+++
T Consensus 97 l~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 97 LRYGMAKSMVAQFDKIVALLGIEPLLDR-YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred HHhhhhhhhHHHHHHHHHHcCCchhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 86422 2234567889999999877664 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 176 ~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~ 217 (352)
T PRK11144 176 REINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVW 217 (352)
T ss_pred HhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHH
Confidence 5699999999999999999999999999875 56666543
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.4e-34 Score=235.81 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=145.7
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~ 98 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS--IFRKLTVEENILA 98 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc--ccccCcHHHHHHH
Confidence 3567888999994443 5999999 9999999999997542 135999999874 7788899998753
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .... ...+.++++.+|+.+..++ ++.+||||||||++||||++.+|++|||||||+|||+.++..+.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 99 VLEIRGLSKKEREEKLEELLEEFHITHLRKS-KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 2 1222 2345678999999876664 789999999999999999999999999999999999999999999987
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++.+.++|+++++|++|+++. .++.+++
T Consensus 178 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 220 (232)
T cd03218 178 ILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEEI 220 (232)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHHh
Confidence 65 5699999999999999999999999999864 5666554
No 59
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-34 Score=235.41 Aligned_cols=168 Identities=21% Similarity=0.299 Sum_probs=142.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 104 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTG--LYDRLTARENLEYFAG 104 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcc--cCcCCCHHHHHHHHHH
Confidence 456788888884443 5999999 9999999999997643 246999999974 77888999987532
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
++.. ...+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 105 LYGLKGDELTARLEELADRLGMEELLDR-RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhh-hhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 2222 2346779999999876664 78999999999999999999999999999999999999999999999875
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++..+++++++|++|+++.
T Consensus 184 ~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 184 ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 5699999999999999999999999999853
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.2e-34 Score=234.00 Aligned_cols=168 Identities=20% Similarity=0.282 Sum_probs=140.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
.++.|..+.+++.-. ++|||++ ++|+++|++|+|.... +..++|++|++. +++..|+.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA--LYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChh--hccCCCHHHHHHHHHHh
Confidence 356788888994443 5999999 9999999999997542 236999999874 67788999987532
Q ss_pred cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+.. .+.+.++++.+|+.+..+. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDR-KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1222 2345678999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++..+|+++++|++|+++.
T Consensus 179 ~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 179 RLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 5699999999999999999999999999864
No 61
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-34 Score=240.53 Aligned_cols=175 Identities=21% Similarity=0.308 Sum_probs=145.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 46 ~i~~Ge~~~l~-G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~ 122 (269)
T cd03294 46 DVREGEIFVIM-GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA--LLPHRTVLEN 122 (269)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc--cCCCCcHHHH
Confidence 46678888888 554 5999999 9999999999997532 136999999875 6778899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+.+.++++.+|+.+..++ ++.+||||||||++||||++.+|++|||||||+|||+.++..+.+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~ 201 (269)
T cd03294 123 VAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQD 201 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 7532 1222 2346678999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|.++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 202 ~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 249 (269)
T cd03294 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEIL 249 (269)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHH
Confidence 98765 5699999999999999999999999999864 46665543
No 62
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-34 Score=235.92 Aligned_cols=174 Identities=25% Similarity=0.374 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l 103 (233)
T cd03258 27 SVPKGEIFGII-GRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN--LLSSRTVFENV 103 (233)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcc--cCCCCcHHHHH
Confidence 46678888888 554 5999999 9999999999997542 246999999975 67788999987
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.. ...+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (233)
T cd03258 104 ALPLEIAGVPKAEIEERVLELLELVGLEDKADA-YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182 (233)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH
Confidence 532 2222 2346788999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||++||+++++.++||++++|++|+++. .++.+++
T Consensus 183 l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9764 5699999999999999999999999999964 4665543
No 63
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=247.24 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=145.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|.... +.+++|+||++...+++.+++.+++.
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 467788899995443 5999999 9999999999997542 24699999998545788889887764
Q ss_pred h---hc-CCC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 67 K---LF-NLP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 67 ~---~~-~~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .. ... .+++.++++.+||.. ..+ +++.+|||||||||+|||||+.+|++||+||||++||+.++..+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~ 195 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYD-RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhc-CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH
Confidence 2 11 222 235678999999964 444 4889999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+|+++ +.|||+||||+..+.++||++++|.+|++++ .|+.++
T Consensus 196 lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive-~g~~~~ 241 (327)
T PRK11308 196 LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE-KGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 98764 5799999999999999999999999999976 455444
No 64
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=260.02 Aligned_cols=179 Identities=26% Similarity=0.506 Sum_probs=153.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc--CCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSR 77 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~ 77 (211)
+++.|.++.++ |-+ ++|||++ |+|+++|++|+|....+..+||++|++...+++.+|+.+++.... ....+.+.
T Consensus 341 ~i~~Ge~~~l~-G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 419 (530)
T PRK15064 341 LLEAGERLAII-GENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVR 419 (530)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHH
Confidence 56788899999 554 5999999 999999999999988878899999986433556789988875332 12345678
Q ss_pred HHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHH
Q psy2681 78 RQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156 (211)
Q Consensus 78 ~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~ 156 (211)
++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|+++++|||+||||++++
T Consensus 420 ~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 420 GTLGRLLFSQDDIK-KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred HHHHHcCCChhHhc-CcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 899999995 4544 48999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 157 RETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
..+|+++++|++|+++.+.|++.++.+
T Consensus 499 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 499 SSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999766788876643
No 65
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-34 Score=233.26 Aligned_cols=168 Identities=26% Similarity=0.373 Sum_probs=142.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++... .+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc--CCcCCcHHHHHHHHHHHcC
Confidence 456788888884443 5999999 9999999999998764 346999999874 67788999987532 22
Q ss_pred CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C
Q psy2681 71 LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q 143 (211)
Q Consensus 71 ~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~ 143 (211)
.. .+.+.++++.+|+....++ ++.+||||||||++||+|++.+|+++||||||+|||+.++..+.+.|+++ +
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~ 178 (210)
T cd03269 100 LKKEEARRRIDEWLERLELSEYANK-RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178 (210)
T ss_pred CChHHHHHHHHHHHHHcCChHHHhC-cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 22 2346778999999876664 78999999999999999999999999999999999999999999999865 4
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.|||++|||.+++.++|+++++|.+|+++.
T Consensus 179 ~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 179 KTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 699999999999999999999999999864
No 66
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=266.24 Aligned_cols=180 Identities=36% Similarity=0.611 Sum_probs=152.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQ 79 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~ 79 (211)
.+..|.++.+++--. ++|||++ |+|.++|++|+|......++||++|++...+++..++.+++.... ......+.++
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 466789999994443 5999999 999999999999886666899999975323556667777654322 2234567889
Q ss_pred HHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 80 LGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 80 l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
++.|++.. ..+ +++++|||||||||+||++++.+|++|||||||||||+.++..+.+.|.++++|||+||||++++..
T Consensus 414 L~~~~l~~~~~~-~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 414 LGGFGFQGDKVT-EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred HHHcCCChhHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 99999964 444 4899999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hCCeEEEEeCCceeeecCChHHHHH
Q psy2681 159 TDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 159 ~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+|+++++|.+|+++.+.|++++|.+
T Consensus 493 ~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 493 TTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred hCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999778899998854
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.8e-34 Score=234.78 Aligned_cols=164 Identities=29% Similarity=0.390 Sum_probs=138.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++
T Consensus 24 ~i~~G~~~~l~-G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l 100 (214)
T TIGR02673 24 HIRKGEFLFLT-GPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFR--LLPDRTVYENV 100 (214)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChh--hccCCcHHHHH
Confidence 45678888888 554 5999999 9999999999997532 236999999875 67788999887
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.. ...+.++++.+++.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 179 (214)
T TIGR02673 101 ALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 532 1222 2356788999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
|+++ +.|||++|||++++..+||++++|++|+
T Consensus 180 l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 180 LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9865 5799999999999999999999998874
No 68
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5e-34 Score=240.17 Aligned_cols=176 Identities=23% Similarity=0.301 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~ 106 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA--LFTDMNVFDNVA 106 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc--cCCCCCHHHHHH
Confidence 467788899994443 5999999 9999999999997542 235999999864 677889999875
Q ss_pred hh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~-~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. . .... ..+.++++.+|+.+..++ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 107 YPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 31 1 1222 245678999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||+||||++++.++|+++++|++|+++. .|+.+++.
T Consensus 186 l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 232 (269)
T PRK11831 186 ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA-HGSAQALQ 232 (269)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE-eCCHHHHh
Confidence 9865 4699999999999999999999999999864 56666554
No 69
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-34 Score=244.95 Aligned_cols=177 Identities=29% Similarity=0.385 Sum_probs=145.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------------------------------CeEE
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------------------------------RLRI 44 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------------------------------~~~i 44 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|.... +..+
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhce
Confidence 3567788999994443 5999999 9999999999987531 2358
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHhh---cCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCC
Q psy2681 45 GKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPD 116 (211)
Q Consensus 45 g~v~q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~ 116 (211)
||+||++...++ ..|+.+++... .+.. .+++.++++.+||. +..+ +++.+|||||||||+||+||+.+|+
T Consensus 108 g~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGqkqrvalA~aL~~~P~ 185 (305)
T PRK13651 108 GVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-RSPFELSGGQKRRVALAGILAMEPD 185 (305)
T ss_pred EEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CChhhCCHHHHHHHHHHHHHHhCCC
Confidence 999998743344 46999988532 1232 23467889999996 4555 4889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 117 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 117 lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|+..++
T Consensus 186 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~-~g~~~~~ 252 (305)
T PRK13651 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK-DGDTYDI 252 (305)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999765 5799999999999999999999999999864 5666554
No 70
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-34 Score=242.42 Aligned_cols=177 Identities=26% Similarity=0.334 Sum_probs=144.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|...+ +..+||+||++...+ ...|+.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~ 107 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL-FEETIEKDIAF 107 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc-ccccHHHHHHh
Confidence 467888999994443 5999999 9999999999996532 246999999874223 35799998853
Q ss_pred h---cCCCH----HHHHHHHHhCCCC--CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 68 L---FNLPY----EKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 68 ~---~~~~~----~~~~~~l~~~gl~--~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. .+... +.+.++++.+||. +..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~ 186 (287)
T PRK13637 108 GPINLGLSEEEIENRVKRAMNIVGLDYEDYKD-KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK 186 (287)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCCchhhcc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 2 12332 3467889999997 4455 47899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||++|||++++..+||++++|++|+++. .|+..++.
T Consensus 187 l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13637 187 IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVF 233 (287)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9764 5699999999999999999999999999874 57666543
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.8e-34 Score=234.54 Aligned_cols=174 Identities=27% Similarity=0.313 Sum_probs=145.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
|.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~ 100 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA--LFDELTVREHLRFYA 100 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCC--ccccCCHHHHHHHHH
Confidence 4677888899994443 6999999 9999999999997543 235899999864 67788999887532
Q ss_pred --cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+... +.+.++++.+++.+..++ ++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 179 (220)
T cd03263 101 RLKGLPKSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHhC-hhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 22222 346778999999876664 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
+.|||++|||++++.++||++++|++|+++. .++.+
T Consensus 180 ~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 217 (220)
T cd03263 180 RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQ 217 (220)
T ss_pred hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHH
Confidence 3699999999999999999999999999874 45544
No 72
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.1e-34 Score=264.94 Aligned_cols=178 Identities=34% Similarity=0.566 Sum_probs=154.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CC--C--HH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL--P--YE 74 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~--~--~~ 74 (211)
.+..|.++.++ |-+ ++|||++ |+|.++|++|+|.......+||++|++ ..+++.+|+.+++.... .. . ..
T Consensus 341 ~i~~Ge~~~l~-G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~ 418 (635)
T PRK11147 341 QVQRGDKIALI-GPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPR 418 (635)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc-cccCCCCCHHHHHHhhcccccccchHH
Confidence 46788999999 554 5999999 999999999999885555799999975 24778899999886421 11 1 34
Q ss_pred HHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 75 KSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 75 ~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
.+.++++.|++.. ..+ +++++|||||||||+||+|++.+|++|||||||||||+.++..+.++|+++++|||+||||+
T Consensus 419 ~~~~~l~~~~l~~~~~~-~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~ 497 (635)
T PRK11147 419 HVLGYLQDFLFHPKRAM-TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497 (635)
T ss_pred HHHHHHHhcCCCHHHHh-ChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5678899999964 344 48899999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHhhCCeEEEEe-CCceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWALE-KKNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l~-~g~i~~~~g~~~~~~~ 183 (211)
+++..+|++++++. +|++..|.|+|++|.+
T Consensus 498 ~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 498 QFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998 8999999999999954
No 73
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-34 Score=233.59 Aligned_cols=176 Identities=25% Similarity=0.292 Sum_probs=147.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++....
T Consensus 21 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 21 TVERGERVAIL-GPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN--LFSHLTVAQNIGLGLN 97 (232)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccc--cccCCcHHHHHhcccc
Confidence 45678888888 554 5999999 9999999999997643 246999999874 777889999885321
Q ss_pred -C--CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 -N--LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 -~--~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. .. ..++.++++.+|++...++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|.++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLAR-LPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1 11 2346788999999876664 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++|||++++.++|+++++|.+|+++ ..|+.+++..
T Consensus 177 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 177 QERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 569999999999999999999999999986 4677776654
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=241.72 Aligned_cols=177 Identities=23% Similarity=0.280 Sum_probs=145.6
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++.. .+...|+.+++...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~e~l~~~ 104 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDD-QVFSSTVWDDVAFG 104 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhh-hhccCcHHHHHHhh
Confidence 3567888999994443 5999999 9999999999997643 2469999998632 23457999988632
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 105 PVNMGLDKDEVERRVEEALKAVRMWDFRDK-PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 1222 2346778999999876664 7899999999999999999999999999999999999999999999976
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ +.|||++|||++++.++||++++|++|+++. .|+.+.+
T Consensus 184 ~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 184 LHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 5 5799999999999999999999999999875 5665544
No 75
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=258.91 Aligned_cols=179 Identities=28% Similarity=0.450 Sum_probs=150.7
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc----------
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---------- 69 (211)
..+..|.++.+++--. ++|||++ |+|+++|++|+|.......+||++|++. +++.+|+.+++....
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 3567889999994443 5999999 9999999999999876678999999864 677888888764210
Q ss_pred ----C-------------------------CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEE
Q psy2681 70 ----N-------------------------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 120 (211)
Q Consensus 70 ----~-------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllL 120 (211)
. ....++.++++.+|+.....++++.+|||||||||+||+||+.+|++|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlL 179 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLL 179 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 01234567899999976443347899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 121 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 121 DEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
||||++||+.++.++.++|.+.+.|||+||||++++.++||++++|++|+++.+.|+++++.
T Consensus 180 DEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 180 DEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999888899999999999999999999999999865688887664
No 76
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-34 Score=231.77 Aligned_cols=162 Identities=25% Similarity=0.299 Sum_probs=135.6
Q ss_pred CeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
..+.++ |-+ ++|||++ ++|+++|++|+|..+. +..++|++|++. +++.+|+.+++....
T Consensus 24 e~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~ 100 (214)
T cd03297 24 EVTGIF-GASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA--LFPHLNVRENLAFGL 100 (214)
T ss_pred eeEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc--cCCCCCHHHHHHHHH
Confidence 556666 554 5999999 9999999999987532 235999999874 677889999875321
Q ss_pred CC-----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 ~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.. ..+.+.++++.+|+....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (214)
T cd03297 101 KRKRNREDRISVDELLDLLGLDHLLNR-YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179 (214)
T ss_pred hhCCHHHHHHHHHHHHHHcCCHhHhhc-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 11 12356789999999876654 78999999999999999999999999999999999999999999999764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++..+|+++++|++|+++.
T Consensus 180 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 5699999999999999999999999999853
No 77
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4e-34 Score=232.23 Aligned_cols=165 Identities=30% Similarity=0.395 Sum_probs=136.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. ..++..|+.+++...
T Consensus 23 ~i~~G~~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-~~~~~~t~~~~l~~~ 100 (211)
T cd03225 23 TIKKGEFVLIV-GPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD-DQFFGPTVEEEVAFG 100 (211)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChh-hhcCCCcHHHHHHHH
Confidence 45678888888 554 5999999 9999999999997543 246899999863 124567999887532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ...+.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 101 LENLGLPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1222 2346678999999866654 7899999999999999999999999999999999999999999999976
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+ +.|||++|||++++..+||++++|++|+
T Consensus 180 ~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 180 LKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 5 4699999999999999999999999874
No 78
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.3e-33 Score=234.82 Aligned_cols=174 Identities=24% Similarity=0.383 Sum_probs=144.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~t 60 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|
T Consensus 25 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t 101 (250)
T PRK11264 25 EVKPGEVVAII-GPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN--LFPHRT 101 (250)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc--cCCCCC
Confidence 46678888898 554 5999999 9999999999986431 236899999874 677789
Q ss_pred HHHHHHhh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 61 PCEYLMKL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 61 ~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+.+++... .... .+.+.++++.+|+....++ ++.+|||||||||+||||++.+|+++||||||+|||+.++
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 180 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS-YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV 180 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC-ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 99987531 1222 2346678999999876654 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.+.|.++ +.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 181 ~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 231 (250)
T PRK11264 181 GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKAL 231 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999998764 5699999999999999999999999999864 5666654
No 79
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.2e-34 Score=247.87 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=145.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.++
T Consensus 19 ~i~~Gei~~l~-G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~en 95 (354)
T TIGR02142 19 TLPGQGVTAIF-GRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR--LFPHLSVRGN 95 (354)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc--cCCCCcHHHH
Confidence 45667888888 554 5999999 9999999999996432 245999999875 7888999999
Q ss_pred HHhhc-CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 65 LMKLF-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 65 ~~~~~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
+.... ... ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 96 LRYGMKRARPSERRISFERVIELLGIGHLLGR-LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHHHhhccChhHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 86321 111 2346789999999877664 78999999999999999999999999999999999999999999998
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 175 ~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEVW 220 (354)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHh
Confidence 764 5699999999999999999999999999864 56665543
No 80
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-34 Score=235.97 Aligned_cols=174 Identities=26% Similarity=0.386 Sum_probs=145.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 23 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~ 99 (242)
T cd03295 23 EIAKGEFLVLI-GPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG--LFPHMTVEENIALV 99 (242)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc--ccCCCcHHHHHHHH
Confidence 46678888888 554 5999999 9999999999997542 236899999874 77788999987532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCC--ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~--~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.+.. .+.+.++++.+|+.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALVGLDPAEFAD-RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1222 234678899999985 555 478999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++ +.|||++||+.+++.++||++++|++|+++. .++.+++
T Consensus 179 ~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 179 KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 764 5699999999999999999999999999974 4665544
No 81
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3e-34 Score=233.30 Aligned_cols=166 Identities=27% Similarity=0.385 Sum_probs=139.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~l~ 100 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR--LLPDRNVYENVA 100 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch--hccCCcHHHHHH
Confidence 466788889994443 5999999 9999999999997542 235999999875 778889999875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.. .+++.++++.+|+++..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 101 FALEVTGVPPREIRKRVPAALELVGLSHKHRA-LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 32 1222 2346678999999876654 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+++ +.|||++|||++++..+||++++|++|++
T Consensus 180 ~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 180 KKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 865 47999999999999999999999998863
No 82
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.4e-34 Score=237.15 Aligned_cols=176 Identities=23% Similarity=0.345 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHLF 56 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~ 56 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. ++
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~ 104 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LW 104 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcc--cC
Confidence 466788899994443 5999999 9999999999996542 235999999875 67
Q ss_pred CCCCHHHHHHh----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 57 PDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 57 ~~~t~~e~~~~----~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
+.+|+.+++.. ..... ..++.++++.+|+......+++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 105 ~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (257)
T PRK10619 105 SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184 (257)
T ss_pred CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 78899998753 11222 23467889999998754234789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 129 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 129 ~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 185 ~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 99999999998765 5799999999999999999999999999974 5776654
No 83
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-33 Score=234.08 Aligned_cols=176 Identities=22% Similarity=0.303 Sum_probs=146.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.++.|..+.+++.-. ++|||++ |+|.++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT--VFENLTVFENLELA 101 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc--cCCCCCHHHHHHHh
Confidence 456788888884443 6999999 9999999999997543 125999999864 78888999987532
Q ss_pred cC-----------C----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 69 FN-----------L----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 69 ~~-----------~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
.. . ....+.++++.+|+.+..++ ++.+|||||+|||+||||++.+|+++||||||+|||+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~ 180 (242)
T TIGR03411 102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180 (242)
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHH
Confidence 11 1 12346778999999876664 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 134 ALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 134 ~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+.+.|+++ +.|||++||+++++.++|+++++|++|+++. .++.+++.
T Consensus 181 ~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~-~~~~~~~~ 230 (242)
T TIGR03411 181 KTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA-EGSLDQVQ 230 (242)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe-eCCHHHHh
Confidence 999999876 4699999999999999999999999999864 57766654
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.4e-34 Score=234.77 Aligned_cols=175 Identities=24% Similarity=0.314 Sum_probs=145.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.++.|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++.
T Consensus 23 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~ 99 (240)
T PRK09493 23 NIDQGEVVVII-GPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFY--LFPHLTALENVM 99 (240)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccc--cCCCCcHHHHHH
Confidence 35678888888 554 5999999 9999999999997542 235899999864 677889998875
Q ss_pred hh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+.+.++++.+|++...++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 178 (240)
T PRK09493 100 FGPLRVRGASKEEAEKQARELLAKVGLAERAHH-YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178 (240)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 32 1222 2345678999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||++|||++++..+||++++|++|+++. .|+..++.
T Consensus 179 l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (240)
T PRK09493 179 MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLI 224 (240)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHh
Confidence 9765 5799999999999999999999999999874 57766553
No 85
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-34 Score=241.22 Aligned_cols=177 Identities=25% Similarity=0.344 Sum_probs=144.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||++|++...++. .|+.+++
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l 106 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDV 106 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHH
Confidence 466788899994443 5999999 9999999999997542 23589999987433454 5899988
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
... .+.+. ..+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~ 185 (288)
T PRK13643 107 AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185 (288)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH
Confidence 532 12222 34567899999964 444 4889999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 186 ~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 232 (288)
T PRK13643 186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS-CGTPSDVF 232 (288)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 98764 5699999999999999999999999999974 67776643
No 86
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=9.9e-34 Score=231.80 Aligned_cols=166 Identities=25% Similarity=0.316 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++
T Consensus 24 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l 100 (222)
T PRK10908 24 HMRPGEMAFLT-GHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH--LLMDRTVYDNV 100 (222)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcc--ccccccHHHHH
Confidence 45678888888 554 6999999 9999999999997532 236899999874 67788999987
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+... ..+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (222)
T PRK10908 101 AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179 (222)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 532 22222 245678999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
|+++ +.|||++|||++++..+||++++|++|+++
T Consensus 180 l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 180 FEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9865 469999999999999999999999999875
No 87
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-34 Score=234.73 Aligned_cols=176 Identities=19% Similarity=0.296 Sum_probs=146.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++.+|+.+++.
T Consensus 24 l~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~ 100 (241)
T PRK10895 24 LTVNSGEIVGLL-GPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS--IFRRLSVYDNLM 100 (241)
T ss_pred EEEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccccCcHHHHHh
Confidence 356778889999 554 5999999 9999999999997543 246999999874 677889999875
Q ss_pred hhc----CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KLF----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~~----~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... ... ...+.++++.+|+.+..+. ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (241)
T PRK10895 101 AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS-MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179 (241)
T ss_pred hhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc-chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 321 111 2346778999999876554 7899999999999999999999999999999999999999999888
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++++ +.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 180 l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 225 (241)
T PRK10895 180 IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEIL 225 (241)
T ss_pred HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHh
Confidence 8654 5799999999999999999999999999864 57766653
No 88
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.3e-34 Score=232.24 Aligned_cols=175 Identities=24% Similarity=0.344 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.++.|..+.+++.-. ++|||++ ++|+++|++|+|..+. +..++|+||++. +++.+|+.+++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~ 99 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR--IFPELTVEENLLLG 99 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc--cCCCCcHHHHHHHH
Confidence 466788888884443 5999999 9999999999997542 235999999874 77888999987532
Q ss_pred c---CC--CHHHHHHHHHhC-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 F---NL--PYEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 ~---~~--~~~~~~~~l~~~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
. .. ....+.++++.+ ++....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 100 AYARRRAKRKARLERVYELFPRLKERRKQ-LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred hhhcCchhHHHHHHHHHHHHHhhhhhhhC-chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 1 11 123455677887 57665554 78999999999999999999999999999999999999999999999865
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 179 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred HHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 4699999999999999999999999999864 4555443
No 89
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-35 Score=240.02 Aligned_cols=164 Identities=24% Similarity=0.359 Sum_probs=141.8
Q ss_pred ecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-cCCCH
Q psy2681 13 LQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPY 73 (211)
Q Consensus 13 i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~~~~~ 73 (211)
+-|.- ++|||+| |+|+.+|+.|.|..++ +++||||||+.. +||.+||..|+... +....
T Consensus 29 lFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR--LFpH~tVrgNL~YG~~~~~~ 106 (352)
T COG4148 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR--LFPHYTVRGNLRYGMWKSMR 106 (352)
T ss_pred EecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc--cccceEEecchhhhhcccch
Confidence 33553 5999999 9999999999997542 568999999975 99999999998643 23345
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEE
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiiv 149 (211)
....++.+.+|+++.+++ ++..|||||||||+|+|||++.|++|++|||.++||..-+.+++.+|.++ +..|++|
T Consensus 107 ~~fd~iv~lLGI~hLL~R-~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV 185 (352)
T COG4148 107 AQFDQLVALLGIEHLLDR-YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185 (352)
T ss_pred HhHHHHHHHhCcHHHHhh-CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE
Confidence 678889999999998876 78999999999999999999999999999999999999999999988755 5689999
Q ss_pred ecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 150 SHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
||.++++.+.+|++++|++|++.. .|..++
T Consensus 186 SHS~~Ev~RLAd~vV~le~GkV~A-~g~~e~ 215 (352)
T COG4148 186 SHSLDEVLRLADRVVVLENGKVKA-SGPLEE 215 (352)
T ss_pred ecCHHHHHhhhheEEEecCCeEEe-cCcHHH
Confidence 999999999999999999999965 465544
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-33 Score=233.77 Aligned_cols=175 Identities=25% Similarity=0.313 Sum_probs=144.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. ...++|++|++. +++..|+.+++...
T Consensus 22 ~~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~ 98 (236)
T TIGR03864 22 FTVRPGEFVALL-GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT--LDLDLSVRQNLRYH 98 (236)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCC--CcccCcHHHHHHHH
Confidence 457788999999 554 5999999 9999999999997543 136999999864 66788999887532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ...+.++++.+|+....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 99 AALHGLSRAEARERIAALLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 2222 2345678999999876664 7899999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.. ||++++|++|+++. .++.+++.
T Consensus 178 ~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~ 220 (236)
T TIGR03864 178 LCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELR 220 (236)
T ss_pred HHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 4 4699999999999975 99999999999864 56666554
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.2e-33 Score=230.92 Aligned_cols=166 Identities=22% Similarity=0.312 Sum_probs=137.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l 104 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHH--LLPDFTALENV 104 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccc--cCCCCcHHHHH
Confidence 356778888884443 5999999 9999999999997542 146999999864 67788999987
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .... .+.+.++++.+|+++..++ ++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 183 (221)
T TIGR02211 105 AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183 (221)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 531 1222 2346788999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
|+++ +.|||++|||++++.. +|++++|++|+++
T Consensus 184 l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 184 MLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9754 5699999999999865 6999999999874
No 92
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-33 Score=256.88 Aligned_cols=187 Identities=27% Similarity=0.480 Sum_probs=154.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CCC--HH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP--YE 74 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~~--~~ 74 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|.......+||++|++. .+++.+|+.+++.... ... ..
T Consensus 344 ~i~~Ge~~~l~-G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~ 421 (552)
T TIGR03719 344 KLPPGGIVGVI-GPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREV 421 (552)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchH
Confidence 45678889999 554 5999999 9999999999998855557999999852 3677889999886432 111 23
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
...++++.+|+......+++.+|||||||||+||||++.+|+++||||||+|||+.++..+.++|+++++|||+||||++
T Consensus 422 ~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~ 501 (552)
T TIGR03719 422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRW 501 (552)
T ss_pred HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 45678999999643223478999999999999999999999999999999999999999999999998789999999999
Q ss_pred HHHhhCCeEEEEeC-CceeeecCChHHHHHHHHHHhhh
Q psy2681 155 LIRETDCELWALEK-KNIRKFNGDFDDYREKLLTSLGE 191 (211)
Q Consensus 155 ~~~~~~~~v~~l~~-g~i~~~~g~~~~~~~~~~~~~~~ 191 (211)
++..+|+++++|++ |++..+.|+++++.+...+...+
T Consensus 502 ~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 539 (552)
T TIGR03719 502 FLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGE 539 (552)
T ss_pred HHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999987 57777889998887655555443
No 93
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9.5e-34 Score=256.62 Aligned_cols=178 Identities=40% Similarity=0.678 Sum_probs=159.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQ 79 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~ 79 (211)
+..+.||.+| |-+ ++|||+| |+|...|.+|+|......++||+.|+.. .+.++.|+.+++.... ......++.+
T Consensus 345 i~~g~riaii-G~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~ 422 (530)
T COG0488 345 IDRGDRIAIV-GPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAY 422 (530)
T ss_pred ecCCCEEEEE-CCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh-hcCccCcHHHHHHhhCccccHHHHHHH
Confidence 5678999999 554 5899999 9999999999999888889999999874 3457779999997655 3336778999
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 159 (211)
|..|+++.....++++.||||||.||.||+.++.+|++||||||||+||.+++..+.+.|.++.+|||+||||.+|+.++
T Consensus 423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRV 502 (530)
T ss_pred HHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhh
Confidence 99999987666679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCceeeecCChHHHHHH
Q psy2681 160 DCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 160 ~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
|+++|.+.+ ++..+.|++++|.+.
T Consensus 503 a~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 503 ATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred cceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999998 787888999998764
No 94
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=240.77 Aligned_cols=176 Identities=23% Similarity=0.332 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++...++ ..|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni 107 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDI 107 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHH
Confidence 456788889994443 5999999 9999999999997543 1359999998743344 46999987
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
... .+... +.+.++++.+||. ...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~ 186 (290)
T PRK13634 108 CFGPMNFGVSEEDAKQKAREMIELVGLPEELLA-RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186 (290)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 532 12222 3467789999997 4444 4789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 187 ~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~ 233 (290)
T PRK13634 187 MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL-QGTPREI 233 (290)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 98764 5699999999999999999999999999864 5776654
No 95
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.3e-34 Score=244.88 Aligned_cols=161 Identities=25% Similarity=0.318 Sum_probs=137.2
Q ss_pred Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCC----HHHHHHHH
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQL 80 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~l 80 (211)
++|||++ |+|+++|++|+|..++ ++.++|+||++. +++.+|+.+|+... .+.. ..++.+++
T Consensus 8 GKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 85 (325)
T TIGR01187 8 GKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEAL 85 (325)
T ss_pred CHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 5899999 9999999999997643 236999999875 78889999998632 1222 23467889
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+.+++.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|+|+||||++++
T Consensus 86 ~~~~l~~~~~~-~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~ 164 (325)
T TIGR01187 86 RLVQLEEFADR-KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164 (325)
T ss_pred HHcCCcchhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999877665 78999999999999999999999999999999999999999999998764 57999999999999
Q ss_pred HhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 157 RETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
..+||++++|++|++.. .|+.+++.
T Consensus 165 ~~~~d~i~vl~~G~i~~-~g~~~~~~ 189 (325)
T TIGR01187 165 MTMSDRIAIMRKGKIAQ-IGTPEEIY 189 (325)
T ss_pred HHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999864 56666543
No 96
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-33 Score=232.44 Aligned_cols=181 Identities=23% Similarity=0.301 Sum_probs=145.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE--IFPRLTVEENLLTG 99 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccCCCcHHHHHHHH
Confidence 356788889994443 5999999 9999999999997542 235999999975 67888999987532
Q ss_pred ---cCCC-HHHHHHHHHhCC-CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 ---FNLP-YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 ---~~~~-~~~~~~~l~~~g-l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.. .....++++.++ +....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|.++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 178 (230)
T TIGR03410 100 LAALPRRSRKIPDEIYELFPVLKEMLGR-RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLR 178 (230)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 233466778776 4555554 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLT 187 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~ 187 (211)
+.|||++||+++++..+|++++++++|+++. .++.+++....+.
T Consensus 179 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~~~~~~~ 225 (230)
T TIGR03410 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDELDEDKVR 225 (230)
T ss_pred HcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHcChHHHH
Confidence 5699999999999999999999999999864 5777666443333
No 97
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.2e-33 Score=230.05 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=142.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++....
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN--LFAHLTVRQNIGLGLH 96 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc--cCCCCcHHHHHHhHhh
Confidence 3567788888884443 5999999 9999999999997643 245999999975 778889999875321
Q ss_pred -CC-----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 -NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 -~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.. ....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||++||+.++..+.++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 175 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYLDR-LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHhhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 11 12356778999999876654 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||+|||+.+++..+||++++|++|+++.
T Consensus 176 ~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 176 SERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 5699999999999999999999999999864
No 98
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-34 Score=233.48 Aligned_cols=166 Identities=24% Similarity=0.359 Sum_probs=138.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 31 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~ 107 (233)
T PRK11629 31 SIGEGEMMAIV-GSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH--LLPDFTALEN 107 (233)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc--cCCCCCHHHH
Confidence 45677888888 554 5999999 9999999999997642 135999999874 6778899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (233)
T PRK11629 108 VAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186 (233)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 7531 1222 2346788999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.|+++ +.|||++|||++++..+ +++++|++|+++.
T Consensus 187 ~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 187 LLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99764 46999999999999876 6999999999864
No 99
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.4e-33 Score=232.35 Aligned_cols=168 Identities=22% Similarity=0.211 Sum_probs=140.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC------eEEEEEeCCCCCCCCCCCCHHHHHHhh-----c
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKL-----F 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~t~~e~~~~~-----~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++. ...+|++|++. +++.+|+.+++... .
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHHHHhccc
Confidence 567788889994443 5999999 99999999999986531 23589999875 77888999987532 1
Q ss_pred CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 70 NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 70 ~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
.... ..+.++++.+|+++..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADK-RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 2222 235678999999876654 78999999999999999999999999999999999999999999999764
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++||++++|++|+++.
T Consensus 164 ~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 164 HRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 5699999999999999999999999999864
No 100
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=232.02 Aligned_cols=174 Identities=26% Similarity=0.384 Sum_probs=148.7
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHH---HhhcCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNL 71 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~---~~~~~~ 71 (211)
..|.-..++ |-+ ++||.|+ |.|++.|++|+|++++ +.+|||+|.+.. +++.+|+.+.+ +.+.+.
T Consensus 26 ~~G~i~Gll-G~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG--Ly~k~tv~dql~yla~LkGm 102 (300)
T COG4152 26 PPGEIFGLL-GPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG--LYPKMTVEDQLKYLAELKGM 102 (300)
T ss_pred cCCeEEEee-cCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc--cCccCcHHHHHHHHHHhcCC
Confidence 344555566 555 5999999 9999999999999875 347999999876 99999998855 445566
Q ss_pred CHH----HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC
Q psy2681 72 PYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG 144 (211)
Q Consensus 72 ~~~----~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ 144 (211)
+.. ++..+|+++++..+..+ ++++||.|++||+++..|++++|+++|||||||||||.+.+.+.+.+.++ |.
T Consensus 103 ~~~e~~~~~~~wLer~~i~~~~~~-kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 103 PKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred cHHHHHHHHHHHHHhccccccccc-hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 544 45679999999988775 89999999999999999999999999999999999999999999998765 67
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||++||.|+.++++||+++.|++|+.+. .|+..+.+.
T Consensus 182 tIifSsH~Me~vEeLCD~llmL~kG~~V~-~G~v~~ir~ 219 (300)
T COG4152 182 TIIFSSHRMEHVEELCDRLLMLKKGQTVL-YGTVEDIRR 219 (300)
T ss_pred EEEEecchHHHHHHHhhhhheecCCceEE-eccHHHHHH
Confidence 99999999999999999999999999874 688776554
No 101
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.3e-34 Score=230.85 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=139.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..++.+++.
T Consensus 22 ~i~~G~~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~ 98 (213)
T cd03262 22 TVKKGEVVVII-GPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN--LFPHLTVLENIT 98 (213)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc--cCCCCcHHHHHH
Confidence 46678888888 554 5999999 9999999999997542 235899999875 677889999875
Q ss_pred hh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+.+.++++.+|+....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 177 (213)
T cd03262 99 LAPIKVKGMSKAEAEERALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177 (213)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 32 1222 2345678999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|+++ +.|||++|||++++.++|+++++|++|++
T Consensus 178 l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 178 MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9865 56999999999999999999999999864
No 102
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-33 Score=256.64 Aligned_cols=175 Identities=29% Similarity=0.485 Sum_probs=148.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-----------
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----------- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~----------- 69 (211)
+..|.++.++ |-+ ++|||++ |+|+++|++|+|.......+||++|++. +++.+|+.+++....
T Consensus 30 i~~Ge~~~ii-G~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (556)
T PRK11819 30 FFPGAKIGVL-GLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--LDPEKTVRENVEEGVAEVKAALDRFN 106 (556)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--CCCCCcHHHHHHHhhHHHHHHHHHHH
Confidence 4567888888 554 5999999 9999999999998876678999999975 677889988874210
Q ss_pred ------CCC--------------------------HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy2681 70 ------NLP--------------------------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 117 (211)
Q Consensus 70 ------~~~--------------------------~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~l 117 (211)
... ..++.++++.+|+.. .+ +++++|||||||||+||+|++.+|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~-~~~~~LSgGqkqrv~la~al~~~p~v 184 (556)
T PRK11819 107 EIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD-AKVTKLSGGERRRVALCRLLLEKPDM 184 (556)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc-CchhhcCHHHHHHHHHHHHHhCCCCE
Confidence 000 234566889999964 44 48899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 118 LILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 118 llLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||||||||+||+.++.++.+.|++++.|||+||||++++..+|+++++|++|+++.+.|+++.+.+
T Consensus 185 lLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 185 LLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999999999999999988999999999999999999999999998767888887643
No 103
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-33 Score=231.41 Aligned_cols=165 Identities=25% Similarity=0.260 Sum_probs=138.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.++
T Consensus 32 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--l~~~~tv~~~ 108 (228)
T PRK10584 32 VVKRGETIALI-GESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM--LIPTLNALEN 108 (228)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccc--cCCCcCHHHH
Confidence 56778888888 554 5999999 9999999999997532 136999999875 6778899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .... .+++.++++.+++.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 187 (228)
T PRK10584 109 VELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187 (228)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 7531 1221 2356788999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
.|+++ +.|||++|||.+++.. ||++++|++|+++
T Consensus 188 ~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 188 LLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 99754 5699999999999865 8999999999875
No 104
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=237.17 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=146.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+++.+++...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~ 109 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP--AAEGMTVRELVAIG 109 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC--CCCCccHHHHHHhC
Confidence 4567888999994443 5999999 9999999999997643 235999999864 56778999987532
Q ss_pred c----C----C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F----N----L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~----~----~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. . . ....+.++++.+++.+..++ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 188 (265)
T PRK10575 110 RYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1 0 1 12346778999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+|.++ +.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 189 ~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (265)
T PRK10575 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA-QGTPAELM 236 (265)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHhc
Confidence 98764 5799999999999999999999999999864 56666554
No 105
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=9e-34 Score=232.67 Aligned_cols=170 Identities=22% Similarity=0.256 Sum_probs=140.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcc-----cCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGEL-----TPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~-----~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
+..|..+.++ |-+ ++|||++ |+|+. +|++|+|..++ +..++|++|++. ++ ..|+.
T Consensus 23 i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~ 98 (227)
T cd03260 23 IPKGEITALI-GPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN--PF-PGSIY 98 (227)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch--hc-cccHH
Confidence 5678888888 554 5999999 99999 99999997542 235999999875 56 78999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCCccccCC-CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIP-IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~~~~~~~-~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
+++... .+. . ..++.++++.+|+.+..++++ +.+||||||||++||||++.+|+++||||||+|||+.++.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 987532 121 1 234677899999987655433 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCCh
Q psy2681 134 ALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDF 178 (211)
Q Consensus 134 ~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~ 178 (211)
.+.+.|+++. .|||++|||++++..+||++++|++|+++. .|+.
T Consensus 179 ~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 224 (227)
T cd03260 179 KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPT 224 (227)
T ss_pred HHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCc
Confidence 9999998763 599999999999999999999999999864 3443
No 106
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=235.64 Aligned_cols=168 Identities=23% Similarity=0.273 Sum_probs=141.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~ 69 (211)
+.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ...++|++|++. +++..|+.+++... .
T Consensus 22 ~~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~ 98 (255)
T PRK11248 22 LTLESGELLVVL-GPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG--LLPWRNVQDNVAFGLQLA 98 (255)
T ss_pred EEECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc--cCCCCcHHHHHHhHHHHc
Confidence 356778899999 554 5999999 9999999999998643 235899999874 67788999987532 2
Q ss_pred CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 70 NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 70 ~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
+.. ...+.++++.+|+.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 99 GVEKMQRLEIAHQMLKKVGLEGAEKR-YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 222 2346788999999876654 78999999999999999999999999999999999999999999999765
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeC--Cceee
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEK--KNIRK 173 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~--g~i~~ 173 (211)
+.|||++|||++++..+|+++++|++ |+++.
T Consensus 178 ~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 178 TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 56999999999999999999999984 87754
No 107
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=232.87 Aligned_cols=175 Identities=25% Similarity=0.298 Sum_probs=143.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++ .++.+++...
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~ 100 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPH--LFE-GTVKDNIEYG 100 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCch--hch-hhHHHHHhcc
Confidence 3567788888884443 5999999 9999999999997543 246999999874 554 5888887532
Q ss_pred ---cCCCHHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 ---FNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ---~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+....++.++++.+|+. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 101 PMLKGEKNVDVEYYLSIVGLNKEYAT-RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred hhhcCcHHHHHHHHHHHcCCCHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 122234567889999996 3444 478999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++|||++++.++||++++|++|+++. .++..++
T Consensus 180 ~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 180 KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE-eCCHHHH
Confidence 6799999999999999999999999999875 4555443
No 108
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=234.41 Aligned_cols=175 Identities=23% Similarity=0.347 Sum_probs=144.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|+||++. +++.+|+.+++..
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~ 103 (255)
T PRK11300 27 EVREQEIVSLI-GPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR--LFREMTVIENLLV 103 (255)
T ss_pred EEcCCeEEEEE-CCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc--cCCCCcHHHHHHH
Confidence 45678888888 554 5999999 9999999999997543 124889999875 7888899998753
Q ss_pred hc-------------C-----CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 68 LF-------------N-----LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 68 ~~-------------~-----~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
.. . .. ...+.++++.+|+.+..++ ++.+||||||||++||+|++.+|++|||||||+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 182 (255)
T PRK11300 104 AQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAA 182 (255)
T ss_pred hhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10 0 00 1245678899999876664 789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 126 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||+.++..+.+.|.++ +.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 183 ~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 242 (255)
T PRK11300 183 GLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTPEEIR 242 (255)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe-cCCHHHHh
Confidence 99999999999999754 5699999999999999999999999999864 56766553
No 109
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.6e-33 Score=236.08 Aligned_cols=182 Identities=20% Similarity=0.298 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCC---cceEEecC----------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPN---KGELRKSP----------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~---~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~t 60 (211)
++..|..+.++ |-+ ++|||++ |+|+++|+ +|+|..++ +..++|+||++. +++.+|
T Consensus 26 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t 102 (262)
T PRK09984 26 NIHHGEMVALL-GPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN--LVNRLS 102 (262)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc--cccCCc
Confidence 56788899999 554 5999999 99999986 48886443 125899999875 677889
Q ss_pred HHHHHHhhc-----------CC-C---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 61 PCEYLMKLF-----------NL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 61 ~~e~~~~~~-----------~~-~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
+.+++.... +. . ...+.++++.+|+.+..++ ++.+|||||||||+||||++.+|++|||||||+
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 181 (262)
T PRK09984 103 VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181 (262)
T ss_pred HHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-CccccCHHHHHHHHHHHHHhcCCCEEEecCccc
Confidence 999885321 00 1 2346789999999866654 789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 126 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
|||+.++..+.+.|+++ +.|||++|||++++.++|+++++|.+|+++ ..|+++++.+.....+
T Consensus 182 ~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~~~~~~~ 248 (262)
T PRK09984 182 SLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDNERFDHL 248 (262)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHhccHHHHHH
Confidence 99999999999999865 469999999999999999999999999986 4678777644333333
No 110
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=234.91 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=146.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~i~~~ 100 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL--TPEGITVRELVAYG 100 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCC--CCCCccHHHHHHhc
Confidence 4577888899994443 5999999 9999999999997543 235999999864 66778999987531
Q ss_pred -------cCC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 -------FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 -------~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
++. ....+.++++.+|+....+. ++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (255)
T PRK11231 101 RSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179 (255)
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 111 12346778999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++.++|+++++|++|+++. .++.+++.
T Consensus 180 ~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 226 (255)
T PRK11231 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEVM 226 (255)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHhc
Confidence 99765 5699999999999999999999999999864 56666653
No 111
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=239.09 Aligned_cols=176 Identities=26% Similarity=0.327 Sum_probs=142.8
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++...++ .+|+.+++.
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~ 108 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVE 108 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHH
Confidence 45678888884443 5999999 9999999999997543 1358999998632234 579999875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .... ...+.++++.+|+. ...+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~ 187 (287)
T PRK13641 109 FGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL 187 (287)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 31 2222 23467889999997 4555 48899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||++|||++++.++||++++|++|+++. .|+..++.
T Consensus 188 l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13641 188 FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK-HASPKEIF 233 (287)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9865 4699999999999999999999999999864 56666543
No 112
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5e-33 Score=231.44 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=139.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---CCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LPYEKS 76 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~---~~~~~~ 76 (211)
++++.|..+.+++.-. ++|||++ |+|+++|++|+|..... .++|++|++. .+...|+.+++..... ......
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~ 96 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGTVRDLLSSITKDFYTHPYFK 96 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCCHHHHHHHHhhhccccHHHH
Confidence 3577899999994443 5999999 99999999999987754 7999999864 4567899988753211 112345
Q ss_pred HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecC
Q psy2681 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 152 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd 152 (211)
.++++.+++....++ ++.+|||||||||+||+||+.+|+++||||||++||+.++..+.+.|+++ +.|||+||||
T Consensus 97 ~~~l~~l~l~~~~~~-~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 97 TEIAKPLQIEQILDR-EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHcCCHHHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 678999999876664 78999999999999999999999999999999999999999999999875 5799999999
Q ss_pred hHHHHhhCCeEEEEeCCce
Q psy2681 153 ERLIRETDCELWALEKKNI 171 (211)
Q Consensus 153 ~~~~~~~~~~v~~l~~g~i 171 (211)
++++..+||++++|+++..
T Consensus 176 ~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 176 IIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHhCCEEEEEcCCCe
Confidence 9999999999999976543
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=234.04 Aligned_cols=174 Identities=26% Similarity=0.379 Sum_probs=144.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++.+|+.
T Consensus 24 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~ 100 (242)
T PRK11124 24 DCPQGETLVLL-GPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN--LWPHLTVQ 100 (242)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc--ccCCCcHH
Confidence 35677888888 554 5999999 9999999999997532 235899999875 77888999
Q ss_pred HHHHh----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 63 EYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 63 e~~~~----~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+++.. ..+.. ...+.++++.+|++...++ ++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~ 179 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHH
Confidence 98752 11222 2346778999999876664 789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.+.|+++ +.|+|++|||.+++.++|+++++|.+|+++. .++.+++
T Consensus 180 l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 228 (242)
T PRK11124 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCF 228 (242)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 99999864 5799999999999999999999999999864 5676654
No 114
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.7e-33 Score=229.68 Aligned_cols=178 Identities=21% Similarity=0.273 Sum_probs=144.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC------eEEEEEeCCCCCCCCCCCCHHHHHHhhc-----
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKLF----- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~t~~e~~~~~~----- 69 (211)
++..|..+.+++.-. ++|||++ ++|..+|++|+|..++. ..++|++|++........|+.+++....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 356788899994343 5999999 99999999999987652 4699999987521223478888875321
Q ss_pred --C-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. .. ...+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 11 2346778999999876664 78999999999999999999999999999999999999999999999865
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|+|++|||++++.++||+++++ +|+++ ..++.+++.+
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 469999999999999999999999 78886 4677766543
No 115
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.8e-33 Score=229.30 Aligned_cols=173 Identities=27% Similarity=0.342 Sum_probs=145.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hcC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~ 70 (211)
.+..|..+.+++.-. ++|||++ ++|.++|++|+|..+. ...++|+||++. +++..|+.+++.. ..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~--~~~~~t~~~~~~~~~~~~~ 99 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP--LYENLTARENLKVHTTLLG 99 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC--ccccCCHHHHHHHHHHHcC
Confidence 456788888884443 5999999 9999999999997643 236899999864 6777899998753 223
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
.....+.++++.+|+++..+. ++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tii 178 (223)
T TIGR03740 100 LPDSRIDEVLNIVDLTNTGKK-KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178 (223)
T ss_pred CCHHHHHHHHHHcCCcHHHhh-hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 345677889999999876664 78999999999999999999999999999999999999999999999865 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
++|||++++.++|+++++|++|+++. .++..
T Consensus 179 i~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 209 (223)
T TIGR03740 179 LSSHILSEVQQLADHIGIISEGVLGY-QGKIN 209 (223)
T ss_pred EEcCCHHHHHHhcCEEEEEeCCEEEE-ecChh
Confidence 99999999999999999999999865 45543
No 116
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=227.49 Aligned_cols=175 Identities=26% Similarity=0.361 Sum_probs=150.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+..|..+.+| |=+ ++|||+| |+|.++|++|+|...+ +..++..||.+. +|+.+||.||+.-.
T Consensus 27 v~~Gei~~LI-GPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r--lF~~lTVlENv~va 103 (250)
T COG0411 27 VRPGEIVGLI-GPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR--LFPGLTVLENVAVG 103 (250)
T ss_pred EcCCeEEEEE-CCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc--ccCCCcHHHHHHHH
Confidence 4567888899 655 5999999 9999999999998643 345888899875 89999999998521
Q ss_pred c----------C---C------CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 69 F----------N---L------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 69 ~----------~---~------~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
. . . ..+++.++|+++||.+.++. +.++||+|||+|+.|||||+.+|++|+||||.+||.+
T Consensus 104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~ 182 (250)
T COG0411 104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182 (250)
T ss_pred hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-hhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCH
Confidence 0 0 0 12356779999999998886 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.....+.+.|++. +.||++|.||+..+..+|||++||+.|+++ ..|++++..+
T Consensus 183 ~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV~~ 239 (250)
T COG0411 183 EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEVRN 239 (250)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHHhc
Confidence 9999999999865 369999999999999999999999999986 4899988764
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.4e-33 Score=235.47 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++...+++..|+.+++.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 467788899994443 5999999 9999999999997542 23599999986323566789988874
Q ss_pred h----hcCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 67 K----LFNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 67 ~----~~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ..... ..++.++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||++||+.++..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~ 191 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDAD-KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 2 11222 23567889999996 4444 4789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 192 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 239 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQLL 239 (265)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHHHc
Confidence 98764 5699999999999999999999999999864 56666543
No 118
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-33 Score=241.28 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=143.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc----CCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT----PNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~----p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|+||++...+++.+|+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 456788889994443 5999999 999986 5899997542 136999999986456788888
Q ss_pred HHHHHhh---c---C---CC----HHHHHHHHHhCCCCCcc--ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q psy2681 62 CEYLMKL---F---N---LP----YEKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126 (211)
Q Consensus 62 ~e~~~~~---~---~---~~----~~~~~~~l~~~gl~~~~--~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g 126 (211)
.+++... + + .. ..++.++++.+||.+.. .++++.+|||||||||+|||||+.+|++||+||||++
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 188 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNA 188 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 8776421 1 1 01 23567899999997521 2347899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 127 LDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 127 LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
||+.++..+.++|+++ +.|||+||||++++.++||++++|.+|++++ .|+.+++
T Consensus 189 LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~g~~~~i 246 (330)
T PRK15093 189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-TAPSKEL 246 (330)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999864 5799999999999999999999999999975 4555443
No 119
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.1e-33 Score=231.06 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=143.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|+ +|+|..++ +..++|+||++. +++ .|+
T Consensus 23 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 98 (247)
T TIGR00972 23 DIPKNQVTALI-GPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN--PFP-MSI 98 (247)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc--cCC-CCH
Confidence 46778889999 554 5999999 99999998 99997532 235999999875 666 899
Q ss_pred HHHHHhh---cC-CC----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FN-LP----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~-~~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+ .. .+.+.++++.+|+. +..++ ++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 99 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 177 (247)
T TIGR00972 99 YDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD-SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177 (247)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9987532 12 11 23456789999997 44554 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++|||++.+..+||++++|++|+++. .++.+++
T Consensus 178 ~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (247)
T TIGR00972 178 IATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQI 230 (247)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999875 3699999999999999999999999999864 5666554
No 120
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.4e-33 Score=234.89 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=144.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++--. ++|||++ |+|+++|++|+|..+. +..++|++|++...+++..++.+++...
T Consensus 34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 113 (267)
T PRK15112 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP 113 (267)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence 3566788888994443 5999999 9999999999997542 2359999998743356677887776421
Q ss_pred ---c-CCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 ---F-NLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ---~-~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. ... .+.+.++++.+|+. ...+ +++.+|||||||||+||+|++.+|+++||||||+|||+.++..+.+.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 114 LRLNTDLEPEQREKQIIETLRQVGLLPDHAS-YYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHHh-cCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1 112 23467789999995 4444 478999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++ +.|||++||+++++..+|+++++|++|+++. .++.+++.
T Consensus 193 ~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 238 (267)
T PRK15112 193 LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RGSTADVL 238 (267)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHh
Confidence 764 5699999999999999999999999999864 66666554
No 121
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.7e-33 Score=233.37 Aligned_cols=176 Identities=23% Similarity=0.338 Sum_probs=145.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHLF 56 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~ 56 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|++. ++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~ 99 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN--LF 99 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc--cC
Confidence 567888999994443 5999999 9999999999997532 235999999864 77
Q ss_pred CCCCHHHHHHhh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 57 PDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 57 ~~~t~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
+..|+.+++... .+.. ...+.++++.+|+.+..++ .+.+|||||+||++||||++.+|+++||||||+|||
T Consensus 100 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 100 PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 788999988531 1222 2346778999999876654 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 129 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 129 ~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.++..+.+.|+++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T TIGR03005 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEIF 235 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999998764 5699999999999999999999999999864 56666553
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-33 Score=232.57 Aligned_cols=177 Identities=25% Similarity=0.273 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~ 101 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS--LSFPFTVEEVVAMGR 101 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc--CCCCCCHHHHHHhhh
Confidence 466788888884443 5999999 9999999999997543 235899999865 567789999875421
Q ss_pred ---CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 ---NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL------NNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 ---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~------~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. ....+.++++.+|+.+..++ ++.+|||||||||+|||||+ .+|+++||||||+|||+.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 102 APHGLSRAEDDALVAAALAQVDLAHLAGR-DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred cccCCCcHHHHHHHHHHHHHcCCHhHhcC-CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 12346778999999876664 78999999999999999999 599999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++|+++ +.|||++|||++++.++||++++|++|+++. .++..++..
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 230 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPAEVLT 230 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHHHHhC
Confidence 998754 4699999999999999999999999999864 577666543
No 123
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=251.15 Aligned_cols=175 Identities=23% Similarity=0.274 Sum_probs=147.4
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
..|+...+++.=. ++|||.| |+|+++|++|+|...+ ++++-++||+|...++|.+|+.+.+....
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 4577788885554 5999999 9999999999997643 24688999999988999999998875322
Q ss_pred ---C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 70 ---N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 70 ---~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
. .. ++++.++++++||+.....+++.+||||||||++|||||+.+|++|++|||||.||+..+..+.++|++
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 1 11 234678899999987433458999999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+ +.|.|+||||+.++.++|||+++|.+|++++. |+.+.
T Consensus 475 lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~ 516 (539)
T COG1123 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEK 516 (539)
T ss_pred HHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHH
Confidence 4 67999999999999999999999999999874 55544
No 124
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.3e-33 Score=255.01 Aligned_cols=178 Identities=28% Similarity=0.423 Sum_probs=149.2
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc----------
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---------- 69 (211)
+.+..|.++.+++--. ++|||++ |+|+++|++|+|..+....+||++|++. +++++|+.+++....
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--CCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 4567788999994443 5999999 9999999999998876678999999975 677889998874210
Q ss_pred -------CC--C------------------------HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q psy2681 70 -------NL--P------------------------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 116 (211)
Q Consensus 70 -------~~--~------------------------~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ 116 (211)
.. . ..++.++++.+|+.. .+ +++.+|||||||||+|||||+.+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-~~~~~LSgGqkqrv~la~al~~~p~ 181 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD-ADVTKLSGGERRRVALCRLLLSKPD 181 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc-CchhhcCHHHHHHHHHHHHHhcCCC
Confidence 00 1 023445678888853 34 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 117 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 117 lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+||||||||+||+.++.++.+.|++++.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus 182 lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 182 MLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999999999999999999888999999999999999999999999998767888887543
No 125
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-33 Score=232.51 Aligned_cols=175 Identities=26% Similarity=0.351 Sum_probs=143.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCC--CCHHHHHHhhcCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD--DTPCEYLMKLFNLPYEKSRR 78 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~--~t~~e~~~~~~~~~~~~~~~ 78 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|....+..++|++|++. +++. .++.+++....+...+++.+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY--LDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccc--cccccChhHHHHHhccccccHHHHHH
Confidence 356788888884443 5999999 9999999999999877778999999874 4443 36666653222334556788
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDER 154 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~ 154 (211)
+++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||++|||++
T Consensus 104 ~l~~~gl~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 104 ALKRVQAGHLIDA-PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HHHHcCChHHHhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999876664 78999999999999999999999999999999999999999999998754 579999999999
Q ss_pred HHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 155 LIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++.++|+++++|++ +++ ..|+.+++.
T Consensus 183 ~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 183 LVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 99999999999965 665 456766553
No 126
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.6e-33 Score=233.19 Aligned_cols=175 Identities=21% Similarity=0.228 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 23 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 23 TAPPGSLTGLL-GPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD--TAVPLTVRDVVALG 99 (256)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc--cCCCCCHHHHHHhc
Confidence 45678888888 554 5999999 9999999999997643 235899999874 56778999987532
Q ss_pred c-------CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .. ....+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 178 (256)
T TIGR03873 100 RIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLA 178 (256)
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 1 11 12246778999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (256)
T TIGR03873 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA-AGPPREVL 225 (256)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE-ecCHHHhh
Confidence 99876 5699999999999999999999999999874 57776654
No 127
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=238.25 Aligned_cols=175 Identities=25% Similarity=0.328 Sum_probs=142.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++...+++ .|+.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~ 108 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREII 108 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHH
Confidence 45677888884443 5999999 9999999999997542 23689999986333444 48888885
Q ss_pred hh---cCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+.+.++++.+|+. ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~ 187 (286)
T PRK13646 109 FGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS-QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL 187 (286)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 32 1222 23456889999997 4444 47899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||+||||++++.++||++++|++|+++. .|+..++
T Consensus 188 l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~ 233 (286)
T PRK13646 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS-QTSPKEL 233 (286)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9764 5699999999999999999999999999874 5676654
No 128
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.8e-33 Score=253.45 Aligned_cols=179 Identities=26% Similarity=0.466 Sum_probs=150.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CC--CHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--PYEK 75 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~--~~~~ 75 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.......+||++|++. .+++.+|+.+++.... .. ....
T Consensus 347 i~~Ge~~~l~-G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~ 424 (556)
T PRK11819 347 LPPGGIVGII-GPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIKVGNREIP 424 (556)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-hcCCCCCHHHHHHhhcccccccccHHH
Confidence 4567888898 665 5999999 9999999999998865557999999862 3678889999886321 11 1234
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
...+++.+|+.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.++|.++++|||+||||+++
T Consensus 425 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 504 (556)
T PRK11819 425 SRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWF 504 (556)
T ss_pred HHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 56789999996432234889999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHhhCCeEEEEeC-CceeeecCChHHHHHH
Q psy2681 156 IRETDCELWALEK-KNIRKFNGDFDDYREK 184 (211)
Q Consensus 156 ~~~~~~~v~~l~~-g~i~~~~g~~~~~~~~ 184 (211)
+..+|+++++|++ |++..+.|++.+|.+.
T Consensus 505 ~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 505 LDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999986 6777688998887653
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.3e-33 Score=227.44 Aligned_cols=170 Identities=23% Similarity=0.258 Sum_probs=137.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++...+++.+|+.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 466788888884443 5999999 9999999999997532 23699999987323566789988875
Q ss_pred hh---cCC-C-HH---H-HHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 67 KL---FNL-P-YE---K-SRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 67 ~~---~~~-~-~~---~-~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. ... . .. . +.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN-RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhh-CCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 21 111 1 11 1 23688999995 4445 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|+++ +.|||++|||++.+..+||++++|++|+++.
T Consensus 186 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999764 5699999999999999999999999998853
No 130
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=240.03 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc----CCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT----PNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~----p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
++..|..+.+++--. ++|||++ |+|+++ |++|+|..++ +..++|+||++...+++.+++
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 456788889994443 5999999 999997 4889997543 125999999985457888888
Q ss_pred HHHHHh----hcCCC----HHHHHHHHHhCCCCC---ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 62 CEYLMK----LFNLP----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 62 ~e~~~~----~~~~~----~~~~~~~l~~~gl~~---~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.+++.. ..+.. .+.+.++++.+||.+ ..+ +++.+|||||||||+|||||+.+|++||+||||++||+.
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~-~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~ 187 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLD-VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 765532 11222 234678999999974 234 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++..++++|+++ +.|+|+||||+..+.++||++++|.+|++++ .|+..+
T Consensus 188 ~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive-~g~~~~ 240 (326)
T PRK11022 188 IQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGKAHD 240 (326)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 999999998764 5699999999999999999999999999976 455544
No 131
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.8e-33 Score=227.80 Aligned_cols=177 Identities=22% Similarity=0.248 Sum_probs=143.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC----CcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP----NKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| ++|+|..++ +..++|++|++...+++.+++.+++.
T Consensus 8 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 86 (230)
T TIGR02770 8 SLKRGEVLALV-GESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI 86 (230)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence 45678888888 554 5999999 9999999 899997643 24699999997322456678877654
Q ss_pred hh---cCCC----HHHHHHHHHhCCCC---CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLP---SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~---~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. .+.. .+++.++++.+++. ...+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~ 165 (230)
T TIGR02770 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLK-KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165 (230)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 21 1111 23467889999997 3444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+++ +.|||++||+++++..+||++++|++|+++. .++.+++.
T Consensus 166 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 214 (230)
T TIGR02770 166 KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE-RGTVKEIF 214 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 998764 5699999999999999999999999999864 56666553
No 132
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-33 Score=239.62 Aligned_cols=175 Identities=26% Similarity=0.327 Sum_probs=143.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------------------CeEEEEEeCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------------------RLRIGKFDQHSG 52 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------------------~~~ig~v~q~~~ 52 (211)
++..|..+.++ |-. ++|||++ |+|+++|++|+|...+ +..+||++|++.
T Consensus 48 ~i~~Ge~~~I~-G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 48 TFEKNKIYFII-GNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 45678888999 554 5999999 9999999999997531 235999999874
Q ss_pred CCCCCCCCHHHHHHhh---cCCCH----HHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCC
Q psy2681 53 EHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124 (211)
Q Consensus 53 ~~l~~~~t~~e~~~~~---~~~~~----~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt 124 (211)
..++. .|+.+++... .+.+. ..+.++++.+|+. ...++ ++.+|||||||||+|||||+.+|++|||||||
T Consensus 127 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt 204 (320)
T PRK13631 127 YQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER-SPFGLSGGQKRRVAIAGILAIQPEILIFDEPT 204 (320)
T ss_pred hcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 33554 5899887532 12222 3456789999996 45554 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 125 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 125 ~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 205 sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 263 (320)
T PRK13631 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK-TGTPYEI 263 (320)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999764 5799999999999999999999999999975 5776654
No 133
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-33 Score=235.34 Aligned_cols=175 Identities=26% Similarity=0.337 Sum_probs=141.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++...++. .|+.++
T Consensus 29 ~i~~Ge~~~l~-G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~ 106 (280)
T PRK13649 29 TIEDGSYTAFI-GHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKD 106 (280)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHH
Confidence 46678888888 554 5999999 9999999999997542 23589999986322444 689888
Q ss_pred HHhh---cCCCH----HHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 65 LMKL---FNLPY----EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 65 ~~~~---~~~~~----~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
+... .+... ..+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (280)
T PRK13649 107 VAFGPQNFGVSQEEAEALAREKLALVGISESLFE-KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185 (280)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 7532 22222 23567889999974 444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 186 ~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (280)
T PRK13649 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDI 232 (280)
T ss_pred HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 998765 5799999999999999999999999999864 5666554
No 134
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.4e-33 Score=229.18 Aligned_cols=176 Identities=22% Similarity=0.315 Sum_probs=141.8
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcc--cCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGEL--TPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++..|..+.++ |-+ ++|||++ |+|+. +|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 21 l~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~ 97 (243)
T TIGR01978 21 LTVKKGEIHAIM-GPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE--EIPGVSNLEF 97 (243)
T ss_pred eEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccc--ccCCcCHHHH
Confidence 356778899999 554 5999999 99995 79999997543 123899999875 6788898887
Q ss_pred HHhhc---C-------CC----HHHHHHHHHhCCCCC-ccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 65 LMKLF---N-------LP----YEKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 65 ~~~~~---~-------~~----~~~~~~~l~~~gl~~-~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
+.... . .. .+.+.++++.+|+.. ..+ +++. +|||||||||+|||||+.+|+++||||||++||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 176 (243)
T TIGR01978 98 LRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176 (243)
T ss_pred HHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc-cccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 64211 1 11 134567899999974 444 3666 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChHHHH
Q psy2681 129 IESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 129 ~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.++..+.++|+++ +.|||++|||++++..+ ||++++|++|+++. .|+.+.+.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (243)
T TIGR01978 177 IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVELAK 233 (243)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHHHhc
Confidence 99999999999876 46999999999999998 89999999999864 56665443
No 135
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=232.95 Aligned_cols=176 Identities=23% Similarity=0.229 Sum_probs=145.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|+||++. +++..++.+++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~~~~~~ 106 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT--TPGDITVQELVARGR 106 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCc--CCCCCcHHHHHHhCc
Confidence 456788888884443 5999999 9999999999997643 235999999975 67778999887532
Q ss_pred -cC------CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 -FN------LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 -~~------~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .. ...+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 185 (265)
T PRK10253 107 YPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 10 11 2346778999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|.++ +.|||++|||++++.++||++++|++|+++. .|+..++.
T Consensus 186 L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (265)
T PRK10253 186 LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9764 5699999999999999999999999999864 57766654
No 136
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.4e-33 Score=232.41 Aligned_cols=178 Identities=17% Similarity=0.249 Sum_probs=142.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC--------------------eEEEEEeCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR--------------------LRIGKFDQHSGEHLFPDD 59 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l~~~~ 59 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..... ..++|++|++...+++..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (258)
T PRK11701 27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV 106 (258)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccc
Confidence 3567788899994443 6999999 99999999999975431 248999998743356667
Q ss_pred CHHHHHHhh---cC-CC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 60 TPCEYLMKL---FN-LP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 60 t~~e~~~~~---~~-~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
++.+++... .. .. ...+.++++.+++.. ..+ +++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 107 SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARID-DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHh-CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 777665421 11 11 234567899999964 444 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++..+|+++++|++|+++. .|+.+++
T Consensus 186 ~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 239 (258)
T PRK11701 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE-SGLTDQV 239 (258)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999998754 5699999999999999999999999999964 5665554
No 137
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.2e-33 Score=239.79 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=144.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC---cceEEecC---------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN---KGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~---~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++|+ +|+|..++ +..|+|+||++...+++.+++.
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 356788899994443 5999999 99999996 99997543 1369999999854578888988
Q ss_pred HHHHh---hc-CCCH----HHHHHHHHhCCCCCcc--ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 63 EYLMK---LF-NLPY----EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 63 e~~~~---~~-~~~~----~~~~~~l~~~gl~~~~--~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+++.. .. +... .++.++++.+||.+.. .++++.+|||||+|||+|||||+.+|++||+||||++||+.++
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 76642 11 2222 3466789999997421 1247899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.++|+++ +.|+|+||||+..+.++||++++|.+|++++ .|+.+++
T Consensus 198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive-~g~~~~i 249 (330)
T PRK09473 198 AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME-YGNARDV 249 (330)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999988764 5699999999999999999999999999976 4665543
No 138
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-33 Score=229.84 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=144.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+++..|..+.+++.-. ++|||++ ++|+.+|++|+|..++ +..++|++|++. +++..|+.+++..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~ 103 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR--VFSRMTVEENLAM 103 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc--cCCCCcHHHHHHH
Confidence 4677889999994443 5999999 9999999999997542 235999999864 6777899998853
Q ss_pred hc--CCC---HHHHHHHHHhC-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 68 LF--NLP---YEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 68 ~~--~~~---~~~~~~~l~~~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.. ... ...+.++++.+ ++.+..+. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 104 GGFFAERDQFQERIKWVYELFPRLHERRIQ-RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHHhC-chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 21 111 22345667777 46655554 7899999999999999999999999999999999999999999999876
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 225 (237)
T PRK11614 183 LREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGDALL 225 (237)
T ss_pred HHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHHHHh
Confidence 4 5799999999999999999999999999864 67776654
No 139
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=255.65 Aligned_cols=177 Identities=21% Similarity=0.426 Sum_probs=145.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHh-------------
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK------------- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~------------- 67 (211)
++..|.++.+++.-. ++|||++ |+|.++|++|+|.......++|++|++. .+ ..++.+++..
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~--~~-~~~~~~~v~~~~~~~~~l~~~~~ 99 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP--AL-PQPALEYVIDGDREYRQLEAQLH 99 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--CC-CCCHHHHHHHhhHHHHHHHHHHH
Confidence 467889999994443 5999999 9999999999999877667999999642 11 2343333210
Q ss_pred -------------hc-------CC-CHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 68 -------------LF-------NL-PYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 68 -------------~~-------~~-~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
.. .. ...++.++++.+|+.. ..+ +++.+|||||||||+||+||+.+|++||||||||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~-~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn 178 (638)
T PRK10636 100 DANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE-RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178 (638)
T ss_pred HHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc-CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 00 00 1235677899999973 444 4899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 126 NLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||+.++.++.++|+++++|||+||||++++..+|+++++|++|++..+.|+++.|..
T Consensus 179 ~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 179 HLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999999999989999999999999999999999999999888999887754
No 140
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.2e-32 Score=258.16 Aligned_cols=181 Identities=39% Similarity=0.706 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHh-hcCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRR 78 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~~ 78 (211)
.+..|.++.++ |-+ ++|||++ |+|+++|++|+|....+.++||++|++...+....+....+.. ......+.+.+
T Consensus 531 ~i~~Ge~i~Lv-G~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 609 (718)
T PLN03073 531 GIDLDSRIAMV-GPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 609 (718)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHH
Confidence 45678899999 554 5999999 9999999999999877778999999753222111121112211 12334567888
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
+++.+|+......+++.+|||||||||+||||++.+|++|||||||||||+.++..+.+.|.++++|||+||||++++..
T Consensus 610 ~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~ 689 (718)
T PLN03073 610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG 689 (718)
T ss_pred HHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99999997532234889999999999999999999999999999999999999999999999887799999999999999
Q ss_pred hCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 159 TDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 159 ~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+|+++++|.+|+++.+.|++.+|.+.
T Consensus 690 ~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 690 SVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999997678998887654
No 141
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-33 Score=233.37 Aligned_cols=176 Identities=24% Similarity=0.298 Sum_probs=141.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++.. .+...++.+++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~-~~~~~~~~~~l~~ 101 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQ-QIFYTDIDSDIAF 101 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhh-ccccccHHHHHHH
Confidence 567788899994443 5999999 9999999999997532 1359999998642 2234567766642
Q ss_pred h---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+... ..+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 180 (271)
T PRK13638 102 SLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 (271)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1 22222 235678999999876654 789999999999999999999999999999999999999999999998
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 181 ~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 223 (271)
T PRK13638 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEV 223 (271)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 75 5699999999999999999999999999864 5666554
No 142
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.3e-33 Score=251.93 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. +++.+|+.+++..
T Consensus 33 ~i~~Ge~~~li-G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~ 109 (510)
T PRK15439 33 TLHAGEVHALL-GGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL--LFPNLSVKENILF 109 (510)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCc--cCCCCcHHHHhhc
Confidence 35678888888 554 5999999 9999999999997643 135999999874 7888999998864
Q ss_pred hcCC---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 68 LFNL---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 68 ~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.... ..+++.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (510)
T PRK15439 110 GLPKRQASMQKMKQLLAALGCQLDLDS-SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188 (510)
T ss_pred ccccchHHHHHHHHHHHHcCCCccccC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 2211 13456789999999877664 78999999999999999999999999999999999999999999999765
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 189 ~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 228 (510)
T PRK15439 189 QGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLS 228 (510)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcC
Confidence 5799999999999999999999999999864 67776654
No 143
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-33 Score=234.89 Aligned_cols=175 Identities=23% Similarity=0.287 Sum_probs=142.3
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+..|..+.+++.-. ++|||++ ++|+++|++|+|..++ +..+||++|++. ..++..|+.+++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLE 108 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChH-HhcccccHHHHHHhhHH
Confidence 34677888884332 6999999 9999999999997543 236899999863 245667999988532
Q ss_pred -cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+... +.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 187 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKER-EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR 187 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 12222 346788999999876664 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++|||++.+. .||++++|++|+++. .|+.+++.
T Consensus 188 ~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 188 DDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 569999999999994 799999999999864 57766543
No 144
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=258.05 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.++.|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +.+++|+||++...+++.+|+.+++
T Consensus 346 ~i~~Ge~~~lv-G~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 346 DLWPGETLSLV-GESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 45678888899 554 5999999 9999999999997543 2369999999743478889999987
Q ss_pred Hhh---cCC-C----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 66 MKL---FNL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 66 ~~~---~~~-~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
... .+. . .+++.++++.+||. ...+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~ 503 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 532 122 1 13567899999996 4455 488999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++|+++ +.|||+||||++++.++||++++|.+|+++. .|+..++
T Consensus 504 ~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~-~g~~~~i 551 (623)
T PRK10261 504 NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE-IGPRRAV 551 (623)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 999653 5799999999999999999999999999975 4655543
No 145
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-33 Score=233.59 Aligned_cols=188 Identities=24% Similarity=0.260 Sum_probs=150.0
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc-C----CcceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT-P----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-p----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+..|+.+.+++-=. ++||+.+ |.|+++ | .+|+|..++ .+.|+|+||+|...|+|-+++
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~I 107 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI 107 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhH
Confidence 45677888883333 5999999 999997 3 567776432 347999999998788998888
Q ss_pred HHHHHh----hcCC-C----HHHHHHHHHhCCCCCc--cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 62 CEYLMK----LFNL-P----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 62 ~e~~~~----~~~~-~----~~~~~~~l~~~gl~~~--~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.+.+.. ..+. . .+++.++|+.+|+++. ..+.++.+|||||||||.||.|++.+|++||+||||++||+.
T Consensus 108 g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt 187 (316)
T COG0444 108 GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187 (316)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHH
Confidence 765542 1222 1 2357789999999864 334588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCCh--------HHHHHHHHHHhhhh
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF--------DDYREKLLTSLGEA 192 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~--------~~~~~~~~~~~~~~ 192 (211)
.+.+++++|+++ +.++|+||||+..+.++||||+||..|++++. |+. ..|.+.++..+...
T Consensus 188 ~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 188 VQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHHHHhcCCCChHHHHHHHhCccc
Confidence 999999999764 67999999999999999999999999999874 443 34666777776544
No 146
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=232.59 Aligned_cols=176 Identities=26% Similarity=0.358 Sum_probs=144.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|...+ +..++|++|++...+ ...|+.+++...
T Consensus 26 ~i~~Ge~~~i~-G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~~~l~~~ 103 (277)
T PRK13652 26 IAPRNSRIAVI-GPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFG 103 (277)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccc-ccccHHHHHHhH
Confidence 45678889999 554 5999999 9999999999997543 135899999874223 357899888531
Q ss_pred ---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+... +.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 104 PINLGLDEETVAHRVSSALHMLGLEELRDR-VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12332 245778999999876665 7899999999999999999999999999999999999999999999975
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 183 l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 226 (277)
T PRK13652 183 LPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA-YGTVEEIF 226 (277)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE-ECCHHHHh
Confidence 4 5699999999999999999999999999864 57776653
No 147
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-32 Score=233.92 Aligned_cols=177 Identities=21% Similarity=0.294 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++... +...|+.+++..
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~-~~~~tv~e~l~~ 106 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQ-LFSASVYQDVSF 106 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchh-hccccHHHHHHh
Confidence 467788999994443 5999999 9999999999997543 23599999987422 335789998853
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.+ ...+.++++.+|+.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 107 GAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 2 2222 2346778999999877664 889999999999999999999999999999999999999999999987
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.
T Consensus 186 ~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 230 (283)
T PRK13636 186 EMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVF 230 (283)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 64 5699999999999999999999999999864 67766643
No 148
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=9.6e-33 Score=251.64 Aligned_cols=176 Identities=27% Similarity=0.360 Sum_probs=145.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec-C-----------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS-P-----------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~-~-----------------~~~ig~v~q~~~~~l~~~~t 60 (211)
+.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+ . +.+++|++|++. +++.+|
T Consensus 305 ~~i~~Ge~~~l~-G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~t 381 (520)
T TIGR03269 305 LEVKEGEIFGIV-GTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRT 381 (520)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCc
Confidence 356778889999 554 5999999 999999999999863 1 135899999864 778899
Q ss_pred HHHHHHhhc--CCC----HHHHHHHHHhCCCCC-----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 61 PCEYLMKLF--NLP----YEKSRRQLGMFGLPS-----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 61 ~~e~~~~~~--~~~----~~~~~~~l~~~gl~~-----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+.+++.... ... ..++.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILD-KYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 999885321 111 234667899999975 344 48899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|+..++.
T Consensus 461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 516 (520)
T TIGR03269 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK-IGDPEEIV 516 (520)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999643 5799999999999999999999999999864 56665543
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-32 Score=226.97 Aligned_cols=176 Identities=25% Similarity=0.336 Sum_probs=146.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
++++.|..+.+++.-. ++|||++ |+|.++|++|+|...+ +..++|++|++. +++.+|+.+++...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYA--LFPHLTVFENIAFGLR 98 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccc--cCCCCcHHHHHHHHHH
Confidence 4678888999994443 6999999 9999999999997642 346999999875 67778998887532
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.. ...+..+++.+|+.+..++ .+.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 177 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANR-KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 2345678999999877665 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++||+++++.++||++++|++|+++. .++.+++
T Consensus 178 ~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~ 218 (232)
T cd03300 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEI 218 (232)
T ss_pred HHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHH
Confidence 5699999999999999999999999999864 5665544
No 150
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=219.52 Aligned_cols=180 Identities=21% Similarity=0.311 Sum_probs=147.8
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.|+-..++ |=+ ++||.|. +.|+++|++|.|..+. +..+||+||+++ .|..+||.+|+.....
T Consensus 29 ~GEiVGLL-GPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S--IFr~LtV~dNi~~vlE 105 (243)
T COG1137 29 SGEIVGLL-GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS--IFRKLTVEDNIMAVLE 105 (243)
T ss_pred CCcEEEEE-CCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch--HhhcCcHHHHHHHHHh
Confidence 34445555 433 5899999 9999999999997542 456999999986 8999999999864321
Q ss_pred C---C------HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 71 L---P------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 71 ~---~------~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
. + ..+.+++|+.|.+.+.++. +..+||||||+|+.|||||+.+|+++||||||+|+||.+...+.++++.
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDS-KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcC-cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 1 1 1235689999999988775 7899999999999999999999999999999999999999888877765
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhh
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLG 190 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~ 190 (211)
+ +..|+|+.|+..+...+|||.+++.+|++. +.|+++++.+ ...++.|
T Consensus 185 L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~n~~Vr~~Y 236 (243)
T COG1137 185 LKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVNNEDVRRVY 236 (243)
T ss_pred HHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhcChhhhhhc
Confidence 4 679999999999999999999999999996 5899887654 4555554
No 151
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-32 Score=226.73 Aligned_cols=177 Identities=22% Similarity=0.279 Sum_probs=146.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+.+..|..+.+++.-. ++|||++ ++|+.+|++|+|..++ +..++|++|++. +++..++.+++....
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~ 97 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYA--LFPHMTVYKNIAYGLK 97 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCc--cCCCccHHHHHHHHHH
Confidence 3466788889994443 5999999 9999999999997643 346999999864 677889998875321
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.. .+.+.++++.+|+.+..++ ++.+|||||+||++||||++.+|++++|||||+|||+.++..+++.|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 176 (235)
T cd03299 98 KRKVDKKEIERKVLEIAEMLGIDHLLNR-KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHHhc-CcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 111 2345678999999876665 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++||+++++.++|+++++|.+|+++. .++.+.+.
T Consensus 177 ~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 218 (235)
T cd03299 177 KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVF 218 (235)
T ss_pred HhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 5699999999999999999999999999874 56665543
No 152
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=233.53 Aligned_cols=177 Identities=23% Similarity=0.277 Sum_probs=141.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +..++|++|++...++ ..|+.+
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e 110 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEK 110 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHHH
Confidence 3567788889984443 5999999 9999999999996432 2358999998632233 358888
Q ss_pred HHHhh---cCCCH----HHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 64 YLMKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 64 ~~~~~---~~~~~----~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
++... .+... +.+.++++.+++. +..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 111 nl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 189 (289)
T PRK13645 111 DIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK-RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189 (289)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 87532 12222 2356788999995 4555 47899999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 136 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 190 ~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (289)
T PRK13645 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEI 238 (289)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9988764 5699999999999999999999999999864 5666554
No 153
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=220.36 Aligned_cols=173 Identities=23% Similarity=0.380 Sum_probs=146.7
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCCCCC
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHLFPD 58 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~ 58 (211)
-.|.+|.||++-. ++||+++ |.-+.+|+.|.|..+. +.+.|+|||+.+ ++..
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FN--LWsH 107 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFN--LWSH 107 (256)
T ss_pred CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcc--hhHH
Confidence 3678999997764 6999999 9999999999997431 335899999875 8899
Q ss_pred CCHHHHHHhh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 59 DTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 59 ~t~~e~~~~~----~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+|+.+|+... .+.++ ++++.+|.++|+.+..+. ++..|||||+||++|||||+.+|+++++|||||+|||+
T Consensus 108 mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~-YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPE 186 (256)
T COG4598 108 MTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA-YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186 (256)
T ss_pred HHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc-CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHH
Confidence 9999998642 23332 456789999999987775 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
-.-+++..++++ +.|+++|||.+.|+..+++.++++++|.+.+ .|+++++
T Consensus 187 lVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qv 239 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQV 239 (256)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHH
Confidence 999988888765 7899999999999999999999999998854 6776553
No 154
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=232.36 Aligned_cols=174 Identities=28% Similarity=0.344 Sum_probs=142.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++.. .+...|+.+++..
T Consensus 24 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~enl~~ 101 (274)
T PRK13644 24 VIKKGEYIGII-GKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPET-QFVGRTVEEDLAF 101 (274)
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhh-hcccchHHHHHHh
Confidence 46678888999 554 5999999 9999999999997542 2359999998742 2455789988753
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.. .+.+.++++.+|+....++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 102 GPENLCLPPIEIRKRVDRALAEIGLEKYRHR-SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 2 1222 2346678999999877664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++.+. .||++++|++|+++. .|+.+++
T Consensus 181 ~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 222 (274)
T PRK13644 181 KLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVL-EGEPENV 222 (274)
T ss_pred HHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEE-ECCHHHH
Confidence 64 569999999999995 699999999999864 5666654
No 155
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-32 Score=232.44 Aligned_cols=176 Identities=24% Similarity=0.320 Sum_probs=144.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+++.|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..+||++|++. .++...|+.+++...
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~ 106 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD-NQFVGATVQDDVAFG 106 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH-HhcccccHHHHHhhh
Confidence 3567888999994443 5999999 9999999999997543 236999999862 245567999988532
Q ss_pred ---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+... +.+.++++.+||.+...+ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQVGMEDFLNR-EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHcCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12222 346788999999877665 7899999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ +.|||++|||++.+.. |+++++|.+|+++. .|+.+++
T Consensus 186 l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~ 227 (279)
T PRK13635 186 LKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILE-EGTPEEI 227 (279)
T ss_pred HHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHH
Confidence 4 5699999999999974 99999999999864 5666554
No 156
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=249.90 Aligned_cols=173 Identities=20% Similarity=0.282 Sum_probs=144.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ +..++|++|++. +++.+|+.+++..
T Consensus 26 ~i~~Ge~~~l~-G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~ 102 (501)
T PRK10762 26 NVYPGRVMALV-GENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELN--LIPQLTIAENIFL 102 (501)
T ss_pred EEcCCeEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchh--ccCCCcHHHHhhh
Confidence 35667888888 554 5999999 9999999999997642 235999999864 7888999998853
Q ss_pred hc------C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 68 LF------N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 68 ~~------~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. . .. ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 181 (501)
T PRK10762 103 GREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDK-LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF 181 (501)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHcCCCCCccC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHH
Confidence 21 1 11 2346788999999877664 78999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++|+++ +.|||+||||++++..+||++++|++|+++. .++..+
T Consensus 182 ~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 227 (501)
T PRK10762 182 RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVAD 227 (501)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCc
Confidence 888765 5699999999999999999999999999864 455443
No 157
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.1e-32 Score=226.17 Aligned_cols=169 Identities=25% Similarity=0.363 Sum_probs=138.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|.... +..++|++|+. ..+++.+|+.+++..
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~tv~e~l~~~~~ 121 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-cccCCCCcHHHHHHHHHH
Confidence 356788888884443 5999999 9999999999997543 23689998542 236778899888742
Q ss_pred hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
..+... ..+.++++.+|+.+..++ ++.+||||||||++||+|++.+|+++||||||+|||+.++..+.++|+++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (236)
T cd03267 122 IYDLPPARFKKRLDELSELLDLEELLDT-PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200 (236)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 222222 235678899999876664 78999999999999999999999999999999999999999999999875
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++||+++++.++||++++|.+|+++.
T Consensus 201 ~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred hcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 4699999999999999999999999998853
No 158
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-32 Score=231.00 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=144.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++...++ ..|+.+++..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~ 102 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAF 102 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHH
Confidence 356788888994443 5999999 9999999999997532 2358999998632233 4688888753
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.. .+.+.++++.+|+.++.++ ++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 103 GPLNLGLSKEEVEKRVKEALKAVGMEGFENK-PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 1 1222 2346678999999877664 889999999999999999999999999999999999999999999998
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 182 ~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (275)
T PRK13639 182 DLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVF 225 (275)
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 75 5699999999999999999999999999874 57766653
No 159
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=225.58 Aligned_cols=176 Identities=22% Similarity=0.204 Sum_probs=142.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++..|+.++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~en 102 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN--PIPNLSIFEN 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc--cCCCCcHHHH
Confidence 456778888884443 5999999 9999974 699997542 246999999874 6778899998
Q ss_pred HHhhc---CC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 65 LMKLF---NL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 65 ~~~~~---~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
+.... .. . .+.+.++++.+|+.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.+
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~ 181 (250)
T PRK14247 103 VALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLD-APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN 181 (250)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 85321 11 1 234567899999853 234 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|+++ +.|||++|||++++.++|+++++|++|+++. .|+.+++.
T Consensus 182 ~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14247 182 TAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE-WGPTREVF 233 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE-ECCHHHHH
Confidence 99999999875 4699999999999999999999999999864 56766553
No 160
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.8e-32 Score=227.31 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=140.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC--------------------eEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR--------------------LRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l~~~~t 60 (211)
++..|..+.+++.-. ++|||++ ++|+.+|++|+|..+.. ..++|++|++...+++..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 467788888984443 5999999 99999999999976421 2489999986423445566
Q ss_pred HHHHHHh----hcCC----CHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 61 PCEYLMK----LFNL----PYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 61 ~~e~~~~----~~~~----~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
+.+++.. .... ....+.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~ 183 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRID-DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhh-cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 6666532 1111 1245678899999963 555 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 132 IDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 132 ~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+..+.++|.+. +.|||+|||+++++..+|+++++|++|+++. .++.+++
T Consensus 184 ~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~ 236 (253)
T TIGR02323 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQV 236 (253)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHH
Confidence 99999988754 5799999999999999999999999999864 4565554
No 161
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=250.31 Aligned_cols=170 Identities=16% Similarity=0.273 Sum_probs=141.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|...+ +..+||++|++. ..+++++|+.+++.
T Consensus 285 ~i~~Ge~~~l~-G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (510)
T PRK09700 285 SVCRGEILGFA-GLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA 363 (510)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence 35678888888 665 5999999 9999999999997643 135899999842 24678899999875
Q ss_pred hhc-----------CC-C----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 67 KLF-----------NL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 67 ~~~-----------~~-~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
... +. . ...+.++++.+|+. +..+ +++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~ 442 (510)
T PRK09700 364 ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDV 442 (510)
T ss_pred cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCcc-CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCH
Confidence 311 10 1 12356889999996 5555 48899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeee
Q psy2681 130 ESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 174 (211)
Q Consensus 130 ~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~ 174 (211)
.++..+.++|+++ +.|||+||||++++.++||++++|++|+++..
T Consensus 443 ~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 443 GAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999765 67999999999999999999999999998653
No 162
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=250.23 Aligned_cols=174 Identities=21% Similarity=0.229 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|...+ +..++|++|++. +++.+|+.+++..
T Consensus 27 ~i~~Ge~~~li-G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~ 103 (510)
T PRK09700 27 TVYPGEIHALL-GENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS--VIDELTVLENLYI 103 (510)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc--ccCCCcHHHHhhh
Confidence 35677888888 554 5999999 9999999999997542 135999999864 6788899998753
Q ss_pred h-------cCC---C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 68 L-------FNL---P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 68 ~-------~~~---~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
. ++. . ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~ 182 (510)
T PRK09700 104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182 (510)
T ss_pred ccccccccccccccCHHHHHHHHHHHHHHcCCCCCccc-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 1 111 1 2346678999999876654 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.++|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 183 ~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 999999765 579999999999999999999999999986 46766654
No 163
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-32 Score=226.96 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=141.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|..+.+++.-. ++|||++ ++|+++| ++|+|..++ +..++|++|++. ++ ..|+
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv 104 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN--PF-LMSI 104 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc--cc-cCcH
Confidence 4567889999994443 5999999 9999987 489987532 235999999875 45 4899
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . .+.+.++++.+++. +..+ +++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 105 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (254)
T PRK14273 105 YDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLN-TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183 (254)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 9988532 111 1 23456778888873 3344 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||++||+++++.++||++++|++|+++. .|+..++.
T Consensus 184 ~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999876 4699999999999999999999999999874 56665543
No 164
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-32 Score=227.63 Aligned_cols=174 Identities=20% Similarity=0.192 Sum_probs=140.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 110 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN--PFP-MSIY 110 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc--cCc-ccHH
Confidence 467788899994443 5999999 9999975 799987532 235999999874 566 8999
Q ss_pred HHHHhh---cCCCH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 63 EYLMKL---FNLPY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 63 e~~~~~---~~~~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
+++... .+... ..+.++++.+++. ...+ +++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 189 (258)
T PRK14268 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLK-SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 988532 22222 2356789999884 2334 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++.+++
T Consensus 190 ~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 240 (258)
T PRK14268 190 TARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQI 240 (258)
T ss_pred HHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999875 4699999999999999999999999999864 5666554
No 165
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.4e-32 Score=225.11 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=142.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccC----CcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTP----NKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++...+.+..++.+++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 103 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR 103 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHH
Confidence 3466788899994443 5999999 9999999 999997643 24699999987422345567766653
Q ss_pred h---hcCC--CHHHHHHHHHhCCCCC---ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 K---LFNL--PYEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~---~~~~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. ..+. ..+.+.++++.+++.+ ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (254)
T PRK10418 104 ETCLALGKPADDATLTAALEAVGLENAARVLK-LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 (254)
T ss_pred HHHHHcCCChHHHHHHHHHHHcCCCChhhhhh-cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 2 1222 2345778999999976 234 47899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||++||+++.+..+||++++|++|+++. .++.+++
T Consensus 183 L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 228 (254)
T PRK10418 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVETL 228 (254)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 8764 5699999999999999999999999999864 5666654
No 166
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=254.92 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=145.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------------------CeEEEEEeCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------------------RLRIGKFDQHSGEH 54 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------------------~~~ig~v~q~~~~~ 54 (211)
+++..|..+.+++--. ++|||++ |+|+++|++|+|.... +..|||++|++...
T Consensus 37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~ 116 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS 116 (623)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence 3567889999994443 5999999 9999999999986421 13599999987434
Q ss_pred CCCCCCHHHHHHhh----cCCCH----HHHHHHHHhCCCCC---ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCC
Q psy2681 55 LFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123 (211)
Q Consensus 55 l~~~~t~~e~~~~~----~~~~~----~~~~~~l~~~gl~~---~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEP 123 (211)
+++.+|+.+++... .+... +++.++++.+||.+ ..+ +++.+|||||||||+||+||+.+|++||||||
T Consensus 117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEP 195 (623)
T PRK10261 117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILS-RYPHQLSGGMRQRVMIAMALSCRPAVLIADEP 195 (623)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHh-CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 67889999988532 12222 35677899999963 344 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 124 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 124 t~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|++||+.++..+.++|+++ +.|||+||||++++.++||++++|++|+++. .|++.++
T Consensus 196 t~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~-~g~~~~~ 256 (623)
T PRK10261 196 TTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE-TGSVEQI 256 (623)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc-cCCHHHh
Confidence 9999999999999998764 5699999999999999999999999999874 5666554
No 167
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-32 Score=226.37 Aligned_cols=173 Identities=21% Similarity=0.267 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.. |++|+|..++ +..++|++|++. +++ .|+
T Consensus 28 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 103 (253)
T PRK14242 28 EFEQNQVTALI-GPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN--PFP-KSI 103 (253)
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC--CCc-CcH
Confidence 46778888898 554 5999999 999864 5899997532 236999999874 565 589
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . .+++.++++.+|+.+ ..+ +++.+|||||||||+||||++.+|+++||||||+|||+
T Consensus 104 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 104 FENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLH-ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9887532 121 1 234567889999853 233 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 235 (253)
T PRK14242 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQI 235 (253)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999999999864 5666554
No 168
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-32 Score=247.92 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=143.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC--CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP--NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| ++|+|..++ +..+||++|++. +++.+|+.+++
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l 103 (506)
T PRK13549 27 KVRAGEIVSLC-GENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA--LVKELSVLENI 103 (506)
T ss_pred EEeCCeEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc--cCCCCcHHHHh
Confidence 45678888898 554 5999999 9999986 899997542 245999999874 77889999988
Q ss_pred Hhhc-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 66 MKLF-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 66 ~~~~-----~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.... . .. .+++.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 182 (506)
T PRK13549 104 FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT-PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182 (506)
T ss_pred hhcccccccCCcCHHHHHHHHHHHHHHcCCCCCccc-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 5321 1 11 2346788999999876664 8899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.++|.++ +.|||++|||++++..+||++++|++|+++. .++.++
T Consensus 183 ~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~ 229 (506)
T PRK13549 183 LDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAAG 229 (506)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-eccccc
Confidence 9999765 5699999999999999999999999999864 455443
No 169
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-32 Score=248.93 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=143.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|+||++. ..+++.+|+.+++.
T Consensus 285 ~i~~Ge~~~l~-G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 285 EVRAGEILGLA-GVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 35678888899 665 5999999 9999999999997643 135899999752 23677888888764
Q ss_pred hh----cC---CC---HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 67 KL----FN---LP---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 67 ~~----~~---~~---~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.. .. .. .+.+.++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l 442 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDI 442 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCcc-CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHH
Confidence 21 01 11 12466889999997 5555 48899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.|+++ +.|||+||||++++.++||++++|++|+++. .++.+++
T Consensus 443 ~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~-~~~~~~~ 490 (510)
T PRK15439 443 YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG-ALTGAAI 490 (510)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEccccC
Confidence 9998865 6799999999999999999999999999874 4444443
No 170
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=228.73 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=138.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-c-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~- 69 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++........++.+++... .
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~ 107 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYG 107 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccc
Confidence 3567888999994443 5999999 9999999999997653 1359999998642111223455554210 0
Q ss_pred -----CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 -----NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 -----~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. ....+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~ 186 (272)
T PRK15056 108 HMGWLRRAKKRDRQIVTAALARVDMVEFRHR-QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186 (272)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11 12345678999999876664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++++.++|++++++ +|+++. .|+.+++
T Consensus 187 ~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 187 ELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 65 569999999999999999998776 898864 5666654
No 171
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=226.50 Aligned_cols=174 Identities=22% Similarity=0.249 Sum_probs=141.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..++ +.+++|++|++. +++ .|+
T Consensus 35 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv 110 (260)
T PRK10744 35 DIAKNQVTAFI-GPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT--PFP-MSI 110 (260)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc--cCc-CcH
Confidence 56678888898 554 6999999 999986 5899986532 246999999874 555 799
Q ss_pred HHHHHhh---c-CCCH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---F-NLPY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~-~~~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... . .... +++.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 111 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~ 189 (260)
T PRK10744 111 YDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLH-QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDP 189 (260)
T ss_pred HHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHh-cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCH
Confidence 9887532 1 1222 3466789999974 2334 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||++||+++.+..+|+++++|++|+++. .|+.+++.
T Consensus 190 ~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (260)
T PRK10744 190 ISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIF 243 (260)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999876 4699999999999999999999999999875 56666543
No 172
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.9e-32 Score=249.01 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+++.|..+.++ |-+ ++|||++ ++|++ |++|+|+.++ +..++|+||++...+++.+|+.+++
T Consensus 308 ~i~~Ge~~~i~-G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLV-GESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 56778889999 554 5999999 99998 5899997543 2358999998632467788999988
Q ss_pred Hhh---cC--CC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 66 MKL---FN--LP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 66 ~~~---~~--~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
... +. .. ...+.++++.+|+.. ..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHH
Confidence 532 11 11 234678899999973 445 48899999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 136 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 465 ~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 513 (529)
T PRK15134 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE-QGDCERV 513 (529)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE-EcCHHHH
Confidence 9999754 5799999999999999999999999999864 5666554
No 173
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=224.41 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=131.4
Q ss_pred cCeeeeecCCC-Ccccccc-ccCcccCCc-----ceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 7 KLRIAVLQGLR-NPLSFIK-PKGELTPNK-----GELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 7 ~~~~~~i~~~~-~~sTLl~-i~G~~~p~~-----G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+-.-++|+==. ++|||++ +..+..... |+|...+ |+++|+|||.|. .|| +++++|+.
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn--PFp-~SIydNVa 109 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN--PFP-MSIYDNVA 109 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC--CCC-chHHHHHH
Confidence 33445663223 4899999 876655544 7776432 668999999986 455 89999987
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.. .+... +.+++.|+...|.+ .+++ ....||||||||+.||||++.+|++||||||||+|||.+...+
T Consensus 110 yG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI 188 (253)
T COG1117 110 YGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI 188 (253)
T ss_pred HhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH
Confidence 42 23322 33566777777753 3333 6778999999999999999999999999999999999999999
Q ss_pred HHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCC
Q psy2681 136 AEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 136 ~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~ 177 (211)
.++|.+++ -||++|||++..+.+++|+.+++..|+++++..+
T Consensus 189 EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 189 EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 99999884 4999999999999999999999999999987433
No 174
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-32 Score=245.14 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=144.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++..
T Consensus 20 ~i~~Ge~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~ 96 (491)
T PRK10982 20 KVRPHSIHALM-GENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN--LVLQRSVMDNMWL 96 (491)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc--cccCCCHHHHhhc
Confidence 45678888888 554 5999999 9999999999997543 235999999874 6788899998753
Q ss_pred hc----C--CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LF----N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~----~--~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.. + .. .+++.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 175 (491)
T PRK10982 97 GRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRA-KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175 (491)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCccC-chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 21 1 11 1246778999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|+++ +.|||++|||++++..+||++++|++|+++. .++..+.
T Consensus 176 ~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 221 (491)
T PRK10982 176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPLAGL 221 (491)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecChhhC
Confidence 99765 5699999999999999999999999999864 4554443
No 175
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.7e-32 Score=221.98 Aligned_cols=167 Identities=26% Similarity=0.371 Sum_probs=135.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++ .|+.+++....
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~ 102 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT--LFY-GTLRDNITLGA 102 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc--ccc-chHHHHhhcCC
Confidence 456778888884343 5999999 9999999999997643 236999999875 454 58888875332
Q ss_pred -CCCHHHHHHHHHhCCCCCccccC----------CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
......+.++++.+++.+..+.. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 103 PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182 (220)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 12344566788888887554431 2469999999999999999999999999999999999999999999
Q ss_pred HHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++. .|||++|||++++ ++||+++++++|+++.
T Consensus 183 l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 183 LRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 98863 5999999999987 6999999999998853
No 176
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-32 Score=228.98 Aligned_cols=176 Identities=22% Similarity=0.273 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+++.-. ++|||++ ++|+++|++|+|..++ +..+||+||++...++ ..++.+++...
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~ 110 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFG 110 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhh
Confidence 456778888885443 5999999 9999999999997542 2368999998742233 45788777532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ...+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 111 PENLGIPPEEIRERVDESLKKVGMYEYRRH-APHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred HhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1222 2346778999999877665 7899999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.. ||++++|++|+++. .|+.+++.
T Consensus 190 l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 190 LNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred HHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 5 5699999999999976 99999999999864 57766654
No 177
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=247.60 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=144.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. ..+++.+|+.+++.
T Consensus 275 ~i~~Ge~~~ii-G~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 353 (501)
T PRK11288 275 SVRAGEIVGLF-GLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353 (501)
T ss_pred EEeCCcEEEEE-cCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence 45678889999 665 5999999 9999999999998643 135899999863 23677889999874
Q ss_pred hhc-------C---CC---HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 67 KLF-------N---LP---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 67 ~~~-------~---~~---~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
... + .. .+.+.++++.+++. +..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 432 (501)
T PRK11288 354 ISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE-QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAK 432 (501)
T ss_pred cccchhhcccccccChHHHHHHHHHHHHhcCcccCCcc-CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHH
Confidence 210 1 01 13467899999994 4555 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
..+.++|.++ +.|||+||||++++.++|+++++|.+|+++. .+..+++.
T Consensus 433 ~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 433 HEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG-ELAREQAT 484 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence 9999998654 6799999999999999999999999999864 45555443
No 178
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.6e-32 Score=222.92 Aligned_cols=175 Identities=25% Similarity=0.333 Sum_probs=145.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
++..|+.+.++ |-+ ++|||++ |+|.++|++|+|..++ +..++|++|++. +++..|+.+++....
T Consensus 22 ~i~~Ge~~~l~-G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~ 98 (237)
T TIGR00968 22 EVPTGSLVALL-GPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA--LFKHLTVRDNIAFGLE 98 (237)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChh--hccCCcHHHHHHhHHH
Confidence 46678888888 554 5999999 9999999999997532 246999999874 677789998875321
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.. .+.+.++++.+++....++ .+.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 177 (237)
T TIGR00968 99 IRKHPKAKIKARVEELLELVQLEGLGDR-YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH 177 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 222 2345678999999866654 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 178 ~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 178 DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred HhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHH
Confidence 5799999999999999999999999999875 56666553
No 179
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-32 Score=225.02 Aligned_cols=175 Identities=21% Similarity=0.186 Sum_probs=141.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ ++|+++| ++|+|..++ +..++|++|++. +++..|+.+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e 104 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN--PFPHLTIYD 104 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc--cCCCCcHHH
Confidence 56788888884443 5999999 9999987 499997532 236999999875 677889999
Q ss_pred HHHhh---cCC--CH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 64 YLMKL---FNL--PY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 64 ~~~~~---~~~--~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
++... .+. .. ..+.++++.+|+.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 105 NVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLN-DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 88532 111 11 24567888898842 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++++..+||++++|++|+++. .|+..++.
T Consensus 184 ~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 184 GTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999876 4699999999999999999999999999974 56665543
No 180
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.2e-32 Score=246.30 Aligned_cols=178 Identities=24% Similarity=0.301 Sum_probs=145.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cCCcceEEecC--------------------------------------
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TPNKGELRKSP-------------------------------------- 40 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p~~G~i~~~~-------------------------------------- 40 (211)
.+..|..+.+++--. ++|||++ |+|++ +|++|+|....
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 456788899994443 5999999 99997 79999987530
Q ss_pred ------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHH
Q psy2681 41 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 107 (211)
Q Consensus 41 ------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~i 107 (211)
+..++|+||++. .+++.+|+.+++... .+.. .+++.++++.+|+++..++ ++.+|||||||||+|
T Consensus 102 ~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrv~i 179 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH-IARDLSGGEKQRVVL 179 (520)
T ss_pred HHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-CcccCCHHHHHHHHH
Confidence 235899999732 367778999887532 2222 2346778999999876664 789999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 108 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||++++|++|+++. .|+++++..
T Consensus 180 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 258 (520)
T TIGR03269 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE-EGTPDEVVA 258 (520)
T ss_pred HHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee-ecCHHHHHH
Confidence 99999999999999999999999999998888754 5699999999999999999999999999864 677776644
No 181
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.6e-32 Score=220.07 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=136.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~ 69 (211)
++..|.++.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++... .
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~ 110 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG--LKADLSTLENLHFLCGLH 110 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc--cccCCcHHHHHHHHHHhc
Confidence 467788898994443 5999999 9999999999997653 235899999864 67778999887532 1
Q ss_pred CC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 NL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 ~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
+. ....+.++++.+++.+..+. ++.+||||||||++||||++.+|+++||||||++||+.++..+.++|.++ +.|
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 111 GRRAKQMPGSALAIVGLAGYEDT-LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred CCcHHHHHHHHHHHcCChhhccC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 22 23456788999999876654 78999999999999999999999999999999999999999999999765 679
Q ss_pred EEEEecChHHHHhhCCeEEEEeC
Q psy2681 146 VILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~ 168 (211)
||++|||++++.++|++++++..
T Consensus 190 iii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 190 ALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999998753
No 182
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.8e-31 Score=248.42 Aligned_cols=175 Identities=27% Similarity=0.485 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHH-------------
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM------------- 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~------------- 66 (211)
++..|.++.++ |-+ ++|||++ |+|.++|++|+|.......++|++|.+. .....++.+++.
T Consensus 25 ~i~~Ge~v~Lv-G~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~--~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 25 HIEDNERVCLV-GRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP--RNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCC--CCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 46678999999 554 5999999 9999999999998876556899988653 112223333210
Q ss_pred -----------------h-------hc---C-CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy2681 67 -----------------K-------LF---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118 (211)
Q Consensus 67 -----------------~-------~~---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ll 118 (211)
. .. . ....++.++++.+|+.. + +++.+|||||||||+||+||+.+|++|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~-~~~~~LSgGekqRv~LAraL~~~P~lL 178 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--D-AALSSLSGGWLRKAALGRALVSNPDVL 178 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--C-CchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 0 00 0 01235677899999963 3 488999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 119 ILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 119 lLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||||||||||+.++.++.++|++++.|||+||||++++..+|+++++|++|+++.+.|+++.|.+
T Consensus 179 LLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 179 LLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999878899887654
No 183
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.1e-32 Score=244.85 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC--CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP--NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..++ +..+||+||++. +++.+|+.+++
T Consensus 23 ~i~~Ge~~~li-G~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l 99 (500)
T TIGR02633 23 EVRPGECVGLC-GENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT--LVPELSVAENI 99 (500)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc--cCCCCcHHHHH
Confidence 35678888888 554 5999999 9999987 799997643 235999999874 67889999987
Q ss_pred Hhhc-----C--CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 66 MKLF-----N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 66 ~~~~-----~--~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.... . .. ..++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 179 (500)
T TIGR02633 100 FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179 (500)
T ss_pred HhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 5321 1 11 13466789999997654344789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.+.|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 180 l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 99998765 5699999999999999999999999999864
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-32 Score=245.26 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=140.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 27 i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~ 103 (501)
T PRK11288 27 CRAGQVHALM-GENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELH--LVPEMTVAENLYLG 103 (501)
T ss_pred EeCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechh--ccCCCCHHHHHHhc
Confidence 4567788888 554 5999999 9999999999997542 246999999864 77888999988632
Q ss_pred c-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 F-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~-----~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. + .. .+++.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++.++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 182 (501)
T PRK11288 104 QLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182 (501)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 1 1 11 2346778999999866554 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 183 l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 183 IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9865 5699999999999999999999999999864
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-32 Score=247.20 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-CCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-PNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..+. +..++|++|++. ..+++++|+.+++
T Consensus 284 ~i~~Ge~~~l~-G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIA-GLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEe-CCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 45678888888 665 5999999 999998 5999998642 234899999863 2367788999987
Q ss_pred Hhh-----cC---CC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 66 MKL-----FN---LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 66 ~~~-----~~---~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
... .. .. .+.+.++++.+++. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 441 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE-LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAK 441 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc-cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHH
Confidence 521 11 11 13467889999996 3555 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.++|.++ +.|||++|||++++.++||++++|.+|+++. .++.+++
T Consensus 442 ~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 492 (506)
T PRK13549 442 YEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG-DLINHNL 492 (506)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EeccccC
Confidence 9999998754 6799999999999999999999999999863 4555544
No 186
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-32 Score=210.05 Aligned_cols=165 Identities=25% Similarity=0.271 Sum_probs=139.5
Q ss_pred ccccCeeeeecCC-CCcccccc-ccCcccCCcceEEec---------------CCeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKS---------------PRLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~---------------~~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..++.+.|++-= -++|||+- ++|+..|++|+|+.. ..+++|+|||... +.|++|..||+.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~--Lip~ltAlENV~ 110 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH--LIPNLTALENVA 110 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee--ccccchhhhhcc
Confidence 3567888888333 35999999 999999999999853 2457999999864 899999999985
Q ss_pred hh---cC----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+ .....+.++|+.+||...... +|.+|||||+|||+||||++..|++||.||||.+||..+-.++.+++
T Consensus 111 lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 111 LPLELRGESSADSRAGAKALLEAVGLGKRLTH-YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189 (228)
T ss_pred chhhhcCCccccHHHHHHHHHHHhCccccccc-CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence 32 22 124457889999999987776 78999999999999999999999999999999999999999999988
Q ss_pred Hh----cCCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 140 KN----YQGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 140 ~~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
-. .+.|+++||||...+.+ |+|++.|.+|+++
T Consensus 190 F~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 190 FALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred HHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 44 46799999999999976 6899999999985
No 187
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=224.00 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=142.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+++..|..+.+++.-. ++|||++ |+|+.+| ++|+|..+. +..++|++|++. +++..|+
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv 102 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN--PFPTMSI 102 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc--cCCCCcH
Confidence 4567889999994443 5999999 9999974 699997532 235999999864 6778899
Q ss_pred HHHHHhh---cCC-CH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-PY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. .. +.+.++++.+|+. ...+ +++.+|||||||||+||||++.+|+++||||||+|||+
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 181 (258)
T PRK14241 103 RDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLD-KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181 (258)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9987532 121 11 2456788889884 2334 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe------CCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE------KKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~------~g~i~~~~g~~~~~ 181 (211)
.++..+.++|+++ +.|||++||+++++.++||++++|+ +|+++. .++..++
T Consensus 182 ~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~~ 240 (258)
T PRK14241 182 ISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEKI 240 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHHH
Confidence 9999999999876 4699999999999999999999997 788864 5666654
No 188
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.7e-31 Score=220.44 Aligned_cols=174 Identities=22% Similarity=0.326 Sum_probs=136.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|++. ++ ..|+.+++....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~ 100 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV--LF-NRSIRDNIALAD 100 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch--hc-cchHHHHhhccC
Confidence 466788888984443 5999999 9999999999997653 246999999874 44 468998885321
Q ss_pred -CCCHHHHH---------HHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSR---------RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
......+. ++++.+ ++....+. ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (237)
T cd03252 101 PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179 (237)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 12222222 233444 44444443 789999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++. .|+++++|++|+++. .++.+++.
T Consensus 180 ~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~ 224 (237)
T cd03252 180 NMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVE-QGSHDELL 224 (237)
T ss_pred HHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-EcCHHHHH
Confidence 99876 469999999999996 599999999999874 56766554
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6e-32 Score=245.46 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=143.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. ..+++.+|+.+++.
T Consensus 274 ~i~~Ge~~~li-G~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 274 TLRKGEILGVS-GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEcCCcEEEEe-cCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 45678888888 554 5999999 9999999999998643 135999999863 23677889998875
Q ss_pred hh----c-C----CC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 67 KL----F-N----LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 67 ~~----~-~----~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
.. . . .. .+++.++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 431 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSME-QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAK 431 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCcc-CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHH
Confidence 31 1 1 11 23467889999995 4555 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.++|+++ +.|||++|||++++..+||++++|++|+++. .++..++
T Consensus 432 ~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 482 (501)
T PRK10762 432 KEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG-EFTREQA 482 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE-EeccccC
Confidence 9999999875 4699999999999999999999999999864 4444443
No 190
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-32 Score=226.71 Aligned_cols=174 Identities=24% Similarity=0.318 Sum_probs=142.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. ..++..|+.+++...
T Consensus 31 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~enl~~~ 108 (271)
T PRK13632 31 EINEGEYVAIL-GHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPD-NQFIGATVEDDIAFG 108 (271)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHH-HhcCcccHHHHHHhH
Confidence 46678888888 554 5999999 9999999999997532 346999999862 135568999987532
Q ss_pred ---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
..... ..+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDYLDK-EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12222 235678999999876665 7899999999999999999999999999999999999999999999986
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ +.|||++||+++.+. .|+++++|++|+++. .|+.+++
T Consensus 188 ~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 229 (271)
T PRK13632 188 LRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEI 229 (271)
T ss_pred HHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHH
Confidence 5 369999999999986 799999999999864 4665554
No 191
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-31 Score=219.82 Aligned_cols=174 Identities=24% Similarity=0.273 Sum_probs=136.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.++.|..+.+++--. ++|||++ |+|+.+|++|+|..+. +..++|++|++. ++.. |+.+++....
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~-tv~~~~~~~~ 101 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF--LFSG-TIMENIRLGR 101 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch--hhhh-HHHHHHhccC
Confidence 467788899994443 5999999 9999999999997643 345999999874 5554 8888876432
Q ss_pred C-CCHHHHHHHHHhC-----------CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 N-LPYEKSRRQLGMF-----------GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ~-~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .....+.+.++.+ ++.....+ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 180 (229)
T cd03254 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGE-NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 (229)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 2 2233344444444 34433333 578999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++||+++++.. |+++++|++|+++. .++.+++.
T Consensus 181 ~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~~~~~~ 225 (229)
T cd03254 181 ALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIE-EGTHDELL 225 (229)
T ss_pred HHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 99876 4699999999999965 99999999999864 56665543
No 192
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-31 Score=223.16 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc---CCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT---PNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~---p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++..|..+.+++.-. ++|||++ ++|+++ |++|+|..++ +..++|+||++. +++ .|+.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--l~~-~tv~eni~ 100 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN--VFV-KSIYENIS 100 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc--ccc-ccHHHHhh
Confidence 456788888884333 5999999 999974 7999997542 346999999875 565 69999875
Q ss_pred hh---cCC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 67 KL---FNL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 67 ~~---~~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
.. .+. . ..++.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~ 179 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSG 179 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 32 111 1 124567899999953 233 367899999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 134 ALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 134 ~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.+.|+++ +.|||++||+++++.++||++++|++|+++. .|+..++
T Consensus 180 ~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 228 (246)
T PRK14269 180 VIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEF 228 (246)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHH
Confidence 999999875 5799999999999999999999999999975 4665554
No 193
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.4e-32 Score=241.34 Aligned_cols=178 Identities=22% Similarity=0.261 Sum_probs=146.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC----cceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN----KGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~----~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|+...+++-=. ++||+.+ +.|++++. +|+|..++ .+.|+|+||+|...+.|-+++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 356788888884333 5999999 99999887 79996542 357999999998777887887
Q ss_pred HHHHHh---hc-CCC----HHHHHHHHHhCCCCCcccc-CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 62 CEYLMK---LF-NLP----YEKSRRQLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 62 ~e~~~~---~~-~~~----~~~~~~~l~~~gl~~~~~~-~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
.+.+.. .. ... .+++.++|+++||++.... +++++|||||||||.||+||+.+|++||+||||++||+..+
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q 190 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 665532 11 122 3456789999999875542 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+++++|+++ +.++|+||||+..+.++|||+++|.+|++++ .|+.+++
T Consensus 191 ~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i 242 (539)
T COG1123 191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEI 242 (539)
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHH
Confidence 9999999865 6799999999999999999999999999986 5666553
No 194
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.98 E-value=6e-32 Score=218.53 Aligned_cols=159 Identities=25% Similarity=0.322 Sum_probs=131.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|...+ +..++|++|++. +++..|+.++
T Consensus 20 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~ 96 (206)
T TIGR03608 20 TIEKGKMYAII-GESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA--LIENETVEEN 96 (206)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh--hccCCcHHHH
Confidence 46778888888 554 5999999 9999999999996532 235999999875 6778899988
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+|+++..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 175 (206)
T TIGR03608 97 LDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-KIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLD 175 (206)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHH
Confidence 7532 1221 2346788999999877664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.|+++ +.|||++||+++.+ ..|+++++|
T Consensus 176 ~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 176 LLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99875 56999999999976 578988764
No 195
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.98 E-value=2.1e-31 Score=221.83 Aligned_cols=175 Identities=20% Similarity=0.243 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+++.|..+.+++.-. ++|||++ ++|+.+ .+|+|..++ +..++|++|++. +++..|+.+++....
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~ 94 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQT--PPFAMPVFQYLTLHQ 94 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCc--cCCCccHHHHHHhcC
Confidence 467788888884443 5999999 999985 589997543 135899999864 566789999876431
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~-------~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
... .+.+.++++.+|+.+..++ ++.+||||||||++||+|++. +|+++||||||+|||+.++..+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~ 173 (248)
T PRK03695 95 PDKTRTEAVASALNEVAEALGLDDKLGR-SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD 173 (248)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhHhcC-CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence 111 2346788999999876654 789999999999999999997 77999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 174 ~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 221 (248)
T PRK03695 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA-SGRRDEVL 221 (248)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 999765 4699999999999999999999999999864 56666553
No 196
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.98 E-value=1.2e-31 Score=225.57 Aligned_cols=175 Identities=23% Similarity=0.295 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++...+++..++.+++
T Consensus 34 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l 112 (268)
T PRK10419 34 SLKSGETVALL-GRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII 112 (268)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence 35667788888 554 5999999 9999999999997542 2369999998743356677888876
Q ss_pred Hhh----cCCC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 66 MKL----FNLP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 66 ~~~----~~~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
... .... ...+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~ 191 (268)
T PRK10419 113 REPLRHLLSLDKAERLARASEMLRAVDLDDSVLD-KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191 (268)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhh-CCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 421 1222 234678999999963 444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+.|+++ +.|||++||+++++.++||++++|++|+++. .|+.++
T Consensus 192 ~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~ 238 (268)
T PRK10419 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE-TQPVGD 238 (268)
T ss_pred HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee-eCChhh
Confidence 988754 5699999999999999999999999999864 455544
No 197
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.5e-31 Score=226.64 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCc---ceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNK---GELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~---G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++..|..+.+++.-. ++|||++ |+|+++|++ |+|..++ +..+||++|++. .+++..|+.+++.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~-~~~~~~tv~enl~ 107 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPD-NQFVGATVGDDVA 107 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHH-HhhccCCHHHHHH
Confidence 356788899994443 5999999 999999987 8987532 246999999873 2456789999885
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+... +.+.++++.+|+.+..++ ++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l 186 (282)
T PRK13640 108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDS-EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI 186 (282)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 32 22222 346778999999877664 78999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++ +.|||++||+++++. .||++++|++|+++. .|+.+++
T Consensus 187 ~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~ 230 (282)
T PRK13640 187 RKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEI 230 (282)
T ss_pred HHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHH
Confidence 764 569999999999995 799999999999975 5666554
No 198
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.98 E-value=8.3e-32 Score=221.06 Aligned_cols=160 Identities=26% Similarity=0.312 Sum_probs=132.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++..
T Consensus 28 ~~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~ 103 (225)
T PRK10247 28 FSLRAGEFKLIT-GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT--LFG-DTVYDNLIF 103 (225)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc--ccc-ccHHHHHHh
Confidence 456778888898 554 5999999 9999999999997553 246899999865 555 599998753
Q ss_pred h---cCC--CHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 68 L---FNL--PYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 68 ~---~~~--~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
. ... ....+.++++.+++.. ..+ +++.+|||||+|||+||||++.+|+++||||||+|||+.++..+.+.|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 104 PWQIRNQQPDPAIFLDDLERFALPDTILT-KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred HHhhcCCChHHHHHHHHHHHcCCChHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 121 2345678999999964 444 47899999999999999999999999999999999999999999998876
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
+ +.|||++|||.+++. .||++++|+
T Consensus 183 ~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 183 YVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 4 569999999999996 699999995
No 199
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.3e-32 Score=226.32 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=141.4
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. .+++..++.+++...
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~~v~~~~~~~~~ 110 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPD-NQFVGSIVKYDVAFGLE 110 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChH-HhcccccHHHHHHhhHH
Confidence 46778888884443 5999999 9999999999998643 235899999863 245667777776422
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.... .+.+.++++.+|+.+..+. ++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 189 (269)
T PRK13648 111 NHAVPYDEMHRRVSEALKQVDMLERADY-EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK 189 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 2345678999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++||+++++.. ||++++|++|+++. .|+.+++.
T Consensus 190 ~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 190 SEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred HhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 5699999999999986 99999999999974 56666543
No 200
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=7.7e-32 Score=218.11 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=135.2
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+++..|..+.+++.-. ++|||++ |+|..+|++|+|..+. +..++|++|.+. +++.+|+.+++....
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG--IKTELTALENLRFYQ 99 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccc--cCcCCcHHHHHHHHH
Confidence 4567788888984443 5999999 9999999999997643 235899999864 677889999875321
Q ss_pred ---C-CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 70 ---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 70 ---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
+ .....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|+++
T Consensus 100 ~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 178 (204)
T PRK13538 100 RLHGPGDDEALWEALAQVGLAGFEDV-PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ 178 (204)
T ss_pred HhcCccHHHHHHHHHHHcCCHHHhhC-ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 2 234567789999999876654 78999999999999999999999999999999999999999999999875
Q ss_pred CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 143 QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
+.|||++|||.+++.....|++.+
T Consensus 179 ~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 179 GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEEecChhhhccCCceEEec
Confidence 579999999999998877777665
No 201
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=5.1e-32 Score=245.75 Aligned_cols=169 Identities=19% Similarity=0.278 Sum_probs=139.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-CcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-NKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~ 65 (211)
++..|..+.++ |-+ ++|||++ |+|+++| ++|+|..+. +.++||++|++. ..+++.+|+.+++
T Consensus 282 ~i~~Ge~~~l~-G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 282 SLRRGEILGVA-GLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EEeCCcEEEEe-CCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 45677888888 665 5999999 9999995 899997643 235899999862 2367888998887
Q ss_pred Hhh----c----CCC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 66 MKL----F----NLP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 66 ~~~----~----~~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
... . ... ...+.++++.+++.. ..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~ 439 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF-LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAK 439 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCcc-CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHH
Confidence 421 1 111 134678899999964 444 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
..+.++|+++ +.|||++|||++++.++||++++|++|+++.
T Consensus 440 ~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 440 YEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999888764 6799999999999999999999999999864
No 202
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.6e-31 Score=221.43 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=141.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+ | ++|+|..++ +..++|+||++. +++..|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~ 103 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN--PFPAMSIY 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC--CCCcCcHH
Confidence 466788888884333 5999999 999986 4 689987432 335999999875 67888999
Q ss_pred HHHHhh---cC-CC----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FN-LP----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~-~~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+ .. .+.+.++++.+++.. ..+ ..+.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~ 182 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 182 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 988532 11 11 134567888999853 233 378999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++||+++++.++||++++|.+|+++. .++.+++
T Consensus 183 ~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14256 183 STLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKI 234 (252)
T ss_pred HHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 5699999999999999999999999999865 4665554
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.8e-31 Score=223.26 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 117 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN--PFP-KSIY 117 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC--CCC-CcHH
Confidence 356788888884443 6999999 9999975 899997532 235899999875 555 4898
Q ss_pred HHHHhh---cCC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 63 EYLMKL---FNL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 63 e~~~~~---~~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+++... .+. . ...+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 118 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 118 ENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 887532 111 1 234567899999953 233 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++|||++++..+|+++++|++|+++. .|+.+++
T Consensus 197 ~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14235 197 IATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKM 249 (267)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999999999874 5665554
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=223.84 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=138.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 119 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN--PFP-KSIY 119 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc--cCc-ccHH
Confidence 356788888994443 5999999 999864 6899996532 236999999875 555 4888
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... ... . ...+.++++.+++. ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~ 198 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH-SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHh-cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHH
Confidence 887532 111 1 12356678888874 2233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 199 ~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 250 (268)
T PRK14248 199 SNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQI 250 (268)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999865 5666554
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.1e-31 Score=221.76 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=138.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cC---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TP---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ |+|+. .| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 103 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN--PFP-MSIY 103 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc--cCc-CcHH
Confidence 467788999994343 5999999 99985 46 489987542 236999999875 555 7999
Q ss_pred HHHHhh---cCCC-----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. ...+.++++.+++.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 182 (252)
T PRK14239 104 ENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 987532 1211 123456788888742 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 183 ~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T PRK14239 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQM 234 (252)
T ss_pred HHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999875 5666554
No 206
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.9e-31 Score=225.48 Aligned_cols=176 Identities=20% Similarity=0.245 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||++|++. .+++..|+.+++...
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPD-NQFVGATVEDDVAFGM 107 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHH-HhhccCCHHHHHHhhH
Confidence 345677888884443 5999999 9999999999997542 346999999863 235567899888532
Q ss_pred --cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+... +.+..+++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 108 ENQGIPREEMIKRVDEALLAVNMLDFKTR-EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 12222 245678999999876654 78999999999999999999999999999999999999999999998754
Q ss_pred ----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++|||++++. .|+++++|++|+++. .|+.+++.
T Consensus 187 ~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 228 (277)
T PRK13642 187 KEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELF 228 (277)
T ss_pred HHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 569999999999997 599999999999864 56666543
No 207
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.7e-31 Score=221.24 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=140.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 102 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN--PFP-MSIY 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC--cCC-CcHH
Confidence 456788888884443 5999999 9999875 789987532 235999999875 565 8999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.++++.+++. +..+ +++.+||+|||||++||||++.+|+++||||||+|||+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14270 103 DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLK-KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPI 181 (251)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 987532 221 1 12356788999874 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++|+++++|++|+++. .++.++.
T Consensus 182 ~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14270 182 STLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE-FNKTEKI 233 (251)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999875 4666554
No 208
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.98 E-value=2.3e-31 Score=217.95 Aligned_cols=163 Identities=22% Similarity=0.307 Sum_probs=134.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEec--C-----------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKS--P-----------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~--~-----------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..+ . +..++|++|++. +++.+|+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv 107 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR--VIPRVSA 107 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc--cCCCccH
Confidence 567888999995553 5999999 999999999999764 1 135899999875 7788899
Q ss_pred HHHHHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 62 CEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 62 ~e~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.+++... .+.. .+.+.++++.+|+.....++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 108 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 108 LEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 9887531 2222 23456789999997643334789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
+.+.|+++ +.|||++||+.+++..+||+++.+.
T Consensus 188 l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 188 VVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999865 5699999999999999999988763
No 209
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.4e-31 Score=218.21 Aligned_cols=174 Identities=24% Similarity=0.279 Sum_probs=137.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++ .|+.+++....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~ 100 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVF--LFN-DTVAENIAYGR 100 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCe--ecc-ccHHHHhhccC
Confidence 356778888884443 5999999 9999999999997643 235999999874 554 69999885321
Q ss_pred -CCCHHHH---------HHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKS---------RRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
......+ .++++.+ ++....+. ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 179 (234)
T cd03251 101 PGATREEVEEAARAANAHEFIMELPEGYDTVIGE-RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179 (234)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhcccCcceeecc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 1122222 2344444 56555554 689999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++.. ||++++|++|+++. .++.+++.
T Consensus 180 ~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~~ 224 (234)
T cd03251 180 ALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE-RGTHEELL 224 (234)
T ss_pred HHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee-eCCHHHHH
Confidence 99876 5699999999999976 99999999999864 56666553
No 210
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=1.7e-31 Score=225.52 Aligned_cols=174 Identities=21% Similarity=0.246 Sum_probs=144.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ |+|+++ ++|+|..+. +..++|+||++. +|+ .|+.+|+...
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~--lf~-~tv~~nl~~~ 100 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVF--IFS-GTFRKNLDPY 100 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcc--cch-hhHHHHhhhc
Confidence 4678899999994332 5999999 999997 789998653 346999999975 565 5889988533
Q ss_pred cCCCHHHHHHHHHhCCCCCccccCCCCC-----------CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.....+.+.++++.+|+....+. .+.. ||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 101 ~~~~~~~~~~~l~~~gL~~~~~~-~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~ 179 (275)
T cd03289 101 GKWSDEEIWKVAEEVGLKSVIEQ-FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179 (275)
T ss_pred cCCCHHHHHHHHHHcCCHHHHHh-CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHH
Confidence 33456677888999999876654 5555 99999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|||+|||+++.+.. ||++++|++|+++. .|+++++.
T Consensus 180 ~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~-~g~~~~l~ 224 (275)
T cd03289 180 TLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQ-YDSIQKLL 224 (275)
T ss_pred HHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEee-cCCHHHHh
Confidence 99864 5699999999999875 99999999999976 46666544
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.98 E-value=1.2e-31 Score=219.19 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=136.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|....+++.-. ++|||++ |+|.++|++|+|..++ +..++|++|++. +++..|+.+++.
T Consensus 27 ~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~n~~ 104 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN--LLGFLTARQNVQ 104 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChh--hcCCCCHHHHHH
Confidence 356678888884443 5999999 9999999999997542 246999999875 677789998875
Q ss_pred hh---cC-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---FN-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .. .. ...+.++++.+|+.+..+. ++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 183 (220)
T TIGR02982 105 MALELQPNLSYQEARERARAMLEAVGLGDHLDY-YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183 (220)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 32 11 22 2346788999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|+++ +.|||++||+++.. ++||++++|++|++
T Consensus 184 l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 184 MQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 8764 57999999999864 79999999999875
No 212
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.98 E-value=1.8e-31 Score=218.12 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=134.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|..+|++|+|..+. +..++|++|++. +++ .|+.+++...
T Consensus 26 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~ 101 (221)
T cd03244 26 SIKPGEKVGIV-GRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV--LFS-GTIRSNLDPF 101 (221)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc--ccc-chHHHHhCcC
Confidence 35667788888 554 5999999 9999999999997543 346999999875 454 5888887533
Q ss_pred cCCCHHHHHHHHHhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
......++.+.++.+++.+... .+++..||+|||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 181 (221)
T cd03244 102 GEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181 (221)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 2334455666666666654321 136789999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ +.|||++||+.+++.. |+++++|++|+++.
T Consensus 182 l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 182 IREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217 (221)
T ss_pred HHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe
Confidence 9876 4699999999999976 89999999999864
No 213
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=1.9e-31 Score=215.39 Aligned_cols=161 Identities=25% Similarity=0.312 Sum_probs=135.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 99 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPG--IKTTLSVLENLRFWHA 99 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccc--cCCCcCHHHHHHhhcc
Confidence 356788899994443 5999999 9999999999997542 236999999864 6778899998864322
Q ss_pred -CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeE
Q psy2681 71 -LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV 146 (211)
Q Consensus 71 -~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ti 146 (211)
...+.+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|+
T Consensus 100 ~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ti 178 (201)
T cd03231 100 DHSDEQVEEALARVGLNGFEDR-PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV 178 (201)
T ss_pred cccHHHHHHHHHHcCChhhhcC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 234567889999999876654 78999999999999999999999999999999999999999999999765 5799
Q ss_pred EEEecChHHHHhhCCeEEEE
Q psy2681 147 ILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l 166 (211)
|++|||...+..+|++++.+
T Consensus 179 ii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 179 VLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEecCchhhhhccceeEec
Confidence 99999999999999998765
No 214
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.98 E-value=3.3e-31 Score=217.52 Aligned_cols=167 Identities=22% Similarity=0.245 Sum_probs=137.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc---CCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT---PNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~---p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|.... +..++|++|++. +++.+|+.+++...
T Consensus 29 ~i~~Ge~~~l~-G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~ 105 (226)
T cd03234 29 HVESGQVMAIL-GSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI--LLPGLTVRETLTYT 105 (226)
T ss_pred EEcCCeEEEEE-CCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCc--cCcCCcHHHHHHHH
Confidence 35667778888 553 5999999 999999 9999997643 356999999865 67888999988531
Q ss_pred ---cC---CCH----HHHHH-HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 ---FN---LPY----EKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ---~~---~~~----~~~~~-~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.. ... ..+.+ .++.+++....++ .+.+|||||+||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~ 184 (226)
T cd03234 106 AILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184 (226)
T ss_pred HHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 11 111 12334 7888998866654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecCh-HHHHhhCCeEEEEeCCceee
Q psy2681 138 AIKNY---QGGVILVSHDE-RLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~ 173 (211)
.++++ +.|+|++||+. +.+.++||++++|++|+++.
T Consensus 185 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 99765 56999999998 68899999999999999864
No 215
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.9e-31 Score=220.03 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=140.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 101 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT--PFP-MSIY 101 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc--cCc-ccHH
Confidence 567788889994443 5999999 9999874 899987532 246999999875 555 7999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPI 180 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 887532 111 1 123566788888853 234 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++.+..+||++++|++|+++. .|+.+++.
T Consensus 181 ~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14262 181 ATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIV 233 (250)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999876 4699999999999999999999999999974 56666543
No 216
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.5e-31 Score=224.75 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=139.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++. ++
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv 136 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN--PFPK-SI 136 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cCcC-CH
Confidence 3567788999994443 5999999 999987 6899997532 236999999874 5654 88
Q ss_pred HHHHHhh---cCCC---HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 62 CEYLMKL---FNLP---YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 62 ~e~~~~~---~~~~---~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.+++... .+.. ..++.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 137 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~ 215 (285)
T PRK14254 137 YDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLD-SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215 (285)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 8887532 1111 235677899999852 334 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEE-EEeCCceeeecCChHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELW-ALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~-~l~~g~i~~~~g~~~~~ 181 (211)
+..+.+.|+++ +.|||++|||++++..+|++++ +|++|+++. .++..++
T Consensus 216 ~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 216 TSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHH
Confidence 99999999887 4699999999999999999975 569999865 5665554
No 217
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3e-31 Score=220.94 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=138.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|+||++. +++. ++.+
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~~-tv~~ 104 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN--PFPK-SIYD 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc--cccC-CHHH
Confidence 56678888884443 5999999 999986 4799997532 235999999874 5554 8888
Q ss_pred HHHhh---cCC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 64 YLMKL---FNL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 64 ~~~~~---~~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
++... .+. . ...+.++++.+|+.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 105 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~ 183 (251)
T PRK14244 105 NVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 (251)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 87532 121 1 123567899999864 233 368899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++.+++
T Consensus 184 ~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 235 (251)
T PRK14244 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEI 235 (251)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999864 5665554
No 218
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=2.1e-31 Score=243.32 Aligned_cols=177 Identities=19% Similarity=0.216 Sum_probs=141.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC---------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t 60 (211)
.+..|..+.+++--. ++|||++ |+|+++| ++|+|..++ +.++||++|++...+++.++
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~ 110 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT 110 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence 456788899994443 5999999 9999986 799986532 13699999986423556678
Q ss_pred HHHHHHhh----cCCC----HHHHHHHHHhCCCCCc---cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 61 PCEYLMKL----FNLP----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 61 ~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~---~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+.+++... .+.. ..++.++++.+|+.+. .+ +++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~ 189 (529)
T PRK15134 111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLT-DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189 (529)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh-hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 77766421 1222 2356788999999752 34 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|...++
T Consensus 190 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~~~ 244 (529)
T PRK15134 190 SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE-QNRAATL 244 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999764 5799999999999999999999999999864 4555544
No 219
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=224.76 Aligned_cols=174 Identities=20% Similarity=0.234 Sum_probs=139.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~ 137 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN--PFP-KSIF 137 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC--CCc-cCHH
Confidence 467788889994443 5999999 999864 4999987532 236999999975 565 4999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+|+. +..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 138 DNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD-KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPK 216 (286)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 988632 121 1 12345678888873 3344 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 217 ~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~ 268 (286)
T PRK14275 217 ATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQL 268 (286)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 3599999999999999999999999999864 5666554
No 220
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=222.33 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=131.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+
T Consensus 35 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv 110 (269)
T PRK14259 35 DIPRGKVTALI-GPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN--PFP-KSI 110 (269)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc--cch-hhH
Confidence 35678888888 554 5999999 999987 6899997542 235999999874 566 499
Q ss_pred HHHHHhhc---CCC---HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 62 CEYLMKLF---NLP---YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 62 ~e~~~~~~---~~~---~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.+++.... +.. .+.+.++++.+++. +..+ +++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 111 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~ 189 (269)
T PRK14259 111 YENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLN-ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIS 189 (269)
T ss_pred HHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhC-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 99885321 111 23456678888763 2344 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+..+.++|+++ +.|||++|||++++..+||++++|++
T Consensus 190 ~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 190 TLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999876 46999999999999999999999996
No 221
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-31 Score=220.01 Aligned_cols=174 Identities=20% Similarity=0.243 Sum_probs=138.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCc---ccC--CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGE---LTP--NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~---~~p--~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+ .+| ++|+|..++ +..++|++|++. +++ .|+
T Consensus 25 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 100 (250)
T PRK14245 25 EIEEKSVVAFI-GPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN--PFP-KSI 100 (250)
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc--cCc-ccH
Confidence 45678888888 554 5999999 9986 454 589986532 235999999874 555 588
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . ...+.++++.+|+.+ ..+ +++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 101 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 179 (250)
T PRK14245 101 FENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179 (250)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 8887532 111 1 134567889999853 233 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 180 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~-~~~~~~~~ 233 (250)
T PRK14245 180 ISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE-YDDTKKIF 233 (250)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999876 4699999999999999999999999999864 56666553
No 222
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=221.02 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=141.0
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
++.|..+.+++.-. ++|||++ |+|..+|++|+|...+ +..++|++|++. +++..|+.++
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~n 110 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN--PFPHLSIYDN 110 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc--cCCCCcHHHH
Confidence 56788899994443 5999999 9999999987654221 346999999875 6777899988
Q ss_pred HHhhc---CC-CH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 65 LMKLF---NL-PY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 65 ~~~~~---~~-~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+.... +. .. ..+.++++.+++.. ..+ +++..||+|||||++||||++.+|+++||||||+|||+.++
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 111 IAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLN-SPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 75321 11 22 23567889999863 334 37899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 133 DALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 133 ~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
..+.+.|.++ +.|||+|||+++++.++|+++++|++|+++. .|+.+++.
T Consensus 190 ~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 190 QAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred HHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999876 3699999999999999999999999999875 46655543
No 223
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=220.59 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=139.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 102 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT--PFP-FSVY 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc--cCC-CcHH
Confidence 456788888884443 5999999 999987 4799986432 235999999874 554 6999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLD-RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHH
Confidence 987532 121 1 13456788888984 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 182 ~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 182 SSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 5699999999999999999999999999975 4565544
No 224
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.7e-31 Score=218.79 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=139.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++|+ +|+|..++ +..++|++|++. +++..|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~ 103 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN--PFPTMSVF 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc--cCcCCCHH
Confidence 466788889994443 5999999 99999874 79986532 236999999875 67778999
Q ss_pred HHHHhh---cCC-CH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-PY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. .. +.+.++++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 182 (252)
T PRK14272 104 DNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLK-TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182 (252)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 988532 121 12 2234456667653 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++||+++++..+||++++|++|+++. .|+.+++
T Consensus 183 ~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14272 183 STARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE-HGPTDQL 234 (252)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 3799999999999999999999999999864 5666554
No 225
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=4.4e-31 Score=222.74 Aligned_cols=175 Identities=23% Similarity=0.274 Sum_probs=142.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCC--------cceEEecC-----------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPN--------KGELRKSP-----------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~--------~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t 60 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|+ +|+|..++ +..++|++|++. +++..|
T Consensus 23 ~i~~Ge~~~l~-G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~--~~~~~t 99 (272)
T PRK13547 23 RIEPGRVTALL-GRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ--PAFAFS 99 (272)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC--CCCCCc
Confidence 45678888888 554 5999999 99999998 89997643 224899999864 345689
Q ss_pred HHHHHHhhc-C-------C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh---------cCCCeEEE
Q psy2681 61 PCEYLMKLF-N-------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL---------NNPDILIL 120 (211)
Q Consensus 61 ~~e~~~~~~-~-------~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~---------~~p~lllL 120 (211)
+.+++.... . . ..+.+.++++.+|+....++ ++.+|||||||||+|||||+ .+|++|||
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllL 178 (272)
T PRK13547 100 AREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178 (272)
T ss_pred HHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEE
Confidence 999875321 0 0 12345678999999876664 78999999999999999999 59999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 121 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 121 DEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
||||+|||+.++..+.++|+++ +.|||+||||++++.++||++++|++|+++. .++.+++.
T Consensus 179 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (272)
T PRK13547 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGAPADVL 243 (272)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-ecCHHHHc
Confidence 9999999999999999999764 5699999999999999999999999999864 56666553
No 226
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.6e-31 Score=214.48 Aligned_cols=176 Identities=24% Similarity=0.350 Sum_probs=145.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
....|+.+++| |-+ ++|||++ |+|+.+|.+|+|.+.+ +..++||||... +|+.+||.||+..
T Consensus 25 ~v~~Geiv~ll-G~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~--iF~~LTVeENL~~ 101 (237)
T COG0410 25 EVERGEIVALL-GRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR--IFPRLTVEENLLL 101 (237)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc--chhhCcHHHHHhh
Confidence 34567888999 554 5999999 9999999999998643 457999999865 8999999999863
Q ss_pred h-cCCC----HH-HHHHHHHhCC-CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L-FNLP----YE-KSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~-~~~~----~~-~~~~~l~~~g-l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. +... .. ..+++++.|- |.+..+ ++.+.|||||||.++|||||+.+|++|+|||||.||-|.-.+++.+.|+
T Consensus 102 g~~~~~~~~~~~~~~e~v~~lFP~Lker~~-~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 102 GAYARRDKEAQERDLEEVYELFPRLKERRN-QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred hhhcccccccccccHHHHHHHChhHHHHhc-CcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 2 1111 11 1556777775 334444 4789999999999999999999999999999999999999999999998
Q ss_pred hcC----CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 141 NYQ----GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 141 ~~~----~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++ .||++|.++..++.+++||.++|.+|+++ +.|+.+++..
T Consensus 181 ~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred HHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 763 39999999999999999999999999996 5788877654
No 227
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.5e-31 Score=242.21 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=141.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCC-C-----CCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLF-P-----DDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~-~-----~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|.... +..++|++|++...++ + .+++.
T Consensus 25 ~i~~Ge~~~li-G~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 103 (490)
T PRK10938 25 TLNAGDSWAFV-GANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA 103 (490)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence 45678888888 554 5999999 9999999999997532 1248999998642121 1 35666
Q ss_pred HHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 63 e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+++.... ...+++.++++.+|+++..++ ++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|+++
T Consensus 104 ~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 104 EIIQDEV-KDPARCEQLAQQFGITALLDR-RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred Hhcccch-hHHHHHHHHHHHcCCHhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 6653211 123457789999999876654 88999999999999999999999999999999999999999999999876
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++|||++++.++||++++|++|+++. .|+.+++
T Consensus 182 ~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 222 (490)
T PRK10938 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGEREEI 222 (490)
T ss_pred HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 5699999999999999999999999999864 5666654
No 228
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=2.1e-31 Score=245.52 Aligned_cols=162 Identities=27% Similarity=0.349 Sum_probs=138.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CC-CHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL-PYEKSRR 78 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~-~~~~~~~ 78 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|... ..++|++|++. +++..|+.+++.... .. ......+
T Consensus 362 i~~Geiv~l~-G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~ 436 (590)
T PRK13409 362 IYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSE 436 (590)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHH
Confidence 4678888999 554 5999999 999999999999875 47999999865 567889999876421 11 2234678
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDER 154 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~ 154 (211)
+++.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++
T Consensus 437 ~L~~l~l~~~~~~-~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 437 IIKPLQLERLLDK-NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HHHHCCCHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999999876654 89999999999999999999999999999999999999999999999875 579999999999
Q ss_pred HHHhhCCeEEEEeCCcee
Q psy2681 155 LIRETDCELWALEKKNIR 172 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~ 172 (211)
++..+||++++|++ ++.
T Consensus 516 ~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 516 MIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHhCCEEEEEcC-cce
Confidence 99999999999965 554
No 229
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.4e-31 Score=218.37 Aligned_cols=174 Identities=21% Similarity=0.226 Sum_probs=138.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~ 101 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN--PFP-MSIY 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc--cCc-ccHH
Confidence 456788888884343 5999999 9998763 689997542 235999999874 565 7898
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 102 ~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14240 102 DNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLK-KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPI 180 (250)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHh-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 887532 221 1 23456678888874 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++.+..+|+++++|++|+++. .++.+++
T Consensus 181 ~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (250)
T PRK14240 181 STLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDL 232 (250)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999975 4665554
No 230
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=2.7e-31 Score=249.17 Aligned_cols=177 Identities=21% Similarity=0.302 Sum_probs=147.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||+| ++|+++|++|+|..++ ++.+||++|++. +| ..|+.+|+...
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~~~ 550 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR--LM-SGSIFENIAGG 550 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCc--cC-cccHHHHHhcC
Confidence 3567899999995554 5999999 9999999999998653 457999999985 54 46899999754
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
...+.+++.++++..|+.+.... .....||||||||++||||++++|+++|||||||+||+.+.+.+.+.
T Consensus 551 ~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~ 630 (686)
T TIGR03797 551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES 630 (686)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 33567778888888877643221 12357999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|++.+.|+|+|||+++.+.. +|++++|++|++++ .|+.+++.+
T Consensus 631 L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll~ 673 (686)
T TIGR03797 631 LERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELMA 673 (686)
T ss_pred HHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99988899999999999865 79999999999975 688776543
No 231
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-31 Score=220.14 Aligned_cols=174 Identities=23% Similarity=0.265 Sum_probs=139.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ |+|+++ | ++|+|..++ +..++|++|++. +++. ++.+
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~-tv~e 111 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN--PFPQ-SIFD 111 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc--cccc-CHHH
Confidence 56788899994443 5999999 999987 3 589986432 235999999875 5554 8988
Q ss_pred HHHhh---cCC-CH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 64 YLMKL---FNL-PY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 64 ~~~~~---~~~-~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
++... .+. .. .++.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.+
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 190 (259)
T PRK14274 112 NVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVS 190 (259)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 87532 121 21 23556788888853 233 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|.++ +.|||++|||++.+.++||++++|++|+++. .|+.+++.
T Consensus 191 ~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 242 (259)
T PRK14274 191 TRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMF 242 (259)
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 99999999876 4699999999999999999999999999975 57766653
No 232
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=218.14 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCHH---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE--- 74 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~~--- 74 (211)
++..|.++.+++.-. ++|||++ |+|+++|++|+|..+. .+++++|.+. +.+.+|+.+++... .+....
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g--~~~~~~~~~~--~~~~~tv~enl~~~~~~~~~~~~~~~ 121 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--EVSVIAISAG--LSGQLTGIENIEFKMLCMGFKRKEIK 121 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC--EEeEEecccC--CCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 566788999994443 5999999 9999999999998765 3567777653 56678898887521 233322
Q ss_pred -HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 75 -KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 75 -~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
.+..+++.+++.+..+. ++.+|||||+||++||+|++.+|++|||||||+|||+.++..+.+.|.++ +.|||++|
T Consensus 122 ~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 122 AMTPKIIEFSELGEFIYQ-PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHcCCchhhcC-CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 23457888899876664 78999999999999999999999999999999999999999999998765 57999999
Q ss_pred cChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
|+++++..+|+++++|++|+++. .|+.+++...
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~~~ 233 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLKD-YGELDDVLPK 233 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEEE-eCCHHHHHHH
Confidence 99999999999999999999874 5777665543
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=7.5e-31 Score=212.58 Aligned_cols=159 Identities=19% Similarity=0.243 Sum_probs=129.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++....
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~~~l~~~~ 106 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT--LFS-GTIRSNLDPFD 106 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc--ccC-ccHHHHhcccC
Confidence 456788888884443 5999999 9999999999998643 346999999974 555 58999885332
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVI 147 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tii 147 (211)
......+.+.++ + . +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.++|+++ +.|+|
T Consensus 107 ~~~~~~~~~~l~---~----~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii 178 (207)
T cd03369 107 EYSDEEIYGALR---V----S-EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTIL 178 (207)
T ss_pred CCCHHHHHHHhh---c----c-CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 233333444444 2 3 367899999999999999999999999999999999999999999999876 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceee
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++||+.+.+.. ||++++|++|++..
T Consensus 179 i~th~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 179 TIAHRLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred EEeCCHHHHhh-CCEEEEEECCEEEe
Confidence 99999999976 89999999999864
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=7.3e-31 Score=216.82 Aligned_cols=174 Identities=26% Similarity=0.315 Sum_probs=135.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++ .|+.+++....
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~ 101 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV--LFD-GTIAENIRYGK 101 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh--hhh-hhHHHHhhccC
Confidence 456788889994443 5999999 9999999999997643 235999999874 454 58888875321
Q ss_pred -CCCHHHHHHHHH---------hC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLG---------MF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~---------~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
........+.++ .+ ++.....+ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~ 180 (238)
T cd03249 102 PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180 (238)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhhccccceeecc-CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 112222222232 22 34333443 678999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++. .||++++|++|+++. .++.+++.
T Consensus 181 ~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~ 225 (238)
T cd03249 181 ALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE-QGTHDELM 225 (238)
T ss_pred HHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99875 469999999999997 799999999999864 56665554
No 235
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=4.7e-31 Score=207.28 Aligned_cols=140 Identities=26% Similarity=0.235 Sum_probs=121.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
+..|.++.+++.-. ++|||++ ++|+++|++|+|.......++|++|++. + +..|+.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~-~~~tv~~nl~~~------------- 87 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--L-PLGTLREQLIYP------------- 87 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--c-ccccHHHHhhcc-------------
Confidence 45778888884443 5999999 9999999999999887788999999874 3 356888886421
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 161 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 161 (211)
++.+||||||||++||||++.+|+++||||||++||+.++..+.+.+++++.|+|++|||.+.+ ..||
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d 155 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHD 155 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCC
Confidence 2478999999999999999999999999999999999999999999999888999999999876 5899
Q ss_pred eEEEEeCCce
Q psy2681 162 ELWALEKKNI 171 (211)
Q Consensus 162 ~v~~l~~g~i 171 (211)
++++|++++.
T Consensus 156 ~i~~l~~~~~ 165 (166)
T cd03223 156 RVLDLDGEGG 165 (166)
T ss_pred EEEEEcCCCC
Confidence 9999988763
No 236
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-31 Score=222.00 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=137.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 122 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN--PFP-KSIY 122 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc--ccc-ccHH
Confidence 356788899994332 5999999 999987 6999997542 235999999875 555 5999
Q ss_pred HHHHhh---cCCC-H----HHHHHHHHhCCC----CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-Y----EKSRRQLGMFGL----PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-~----~~~~~~l~~~gl----~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. . ..+.++++.+++ .+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 123 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~ 201 (271)
T PRK14238 123 DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLH-DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPI 201 (271)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 987532 1221 1 123455666643 33344 378999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 202 ~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~ 253 (271)
T PRK14238 202 STLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKI 253 (271)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999975 4666554
No 237
>KOG0066|consensus
Probab=99.97 E-value=8.7e-32 Score=233.81 Aligned_cols=190 Identities=63% Similarity=1.022 Sum_probs=177.5
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
-..-||+|+ |-+ +.|||++ +.|.+.|+.|+.+.+.+.+||++.|+....+....|..+|+...++++.+.+++.|.
T Consensus 611 DmdSRiaIV-GPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG 689 (807)
T KOG0066|consen 611 DMDSRIAIV-GPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG 689 (807)
T ss_pred cccceeEEE-CCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence 345689999 554 6999999 999999999999999999999999988777888999999999999999999999999
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 161 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 161 (211)
.|||....+.-++..|||||+.||++|-.-+..|++||||||||+||+++...+.+.|+++++.||+||||-.++.+..|
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDC 769 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCc
Confidence 99999888877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCceeeecCChHHHHHHHHHHhhhhhhc
Q psy2681 162 ELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVY 195 (211)
Q Consensus 162 ~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~ 195 (211)
..||+++.+|-.+.|++++|+.+.++.+.++++.
T Consensus 770 ~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv~vs 803 (807)
T KOG0066|consen 770 NLWVVENQGIDEIDGDFEDYKKEVLDALGEVLVS 803 (807)
T ss_pred eEEEEccCChhhccccHHHHHHHHHHHHHHHhhC
Confidence 9999999999888999999999999999987754
No 238
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=9.7e-31 Score=217.80 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=138.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCc--ccCCcceEEecC-----------C-eEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGE--LTPNKGELRKSP-----------R-LRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~--~~p~~G~i~~~~-----------~-~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+++..|..+.+++.-. ++|||++ |+|+ ++|++|+|.... + ..++|++|++. +++..++.+++
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~~l 105 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI--EIPGVSNADFL 105 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccc--ccccccHHHHH
Confidence 5677888999994443 5999999 9998 579999997532 1 14788999864 67777888776
Q ss_pred HhhcC----------CC----HHHHHHHHHhCCCCC-ccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 66 MKLFN----------LP----YEKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 66 ~~~~~----------~~----~~~~~~~l~~~gl~~-~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
..... .. ...+.++++.+|+.. ..++ ++. .|||||||||+||||++.+|+++||||||+|||+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 184 (252)
T CHL00131 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR-NVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184 (252)
T ss_pred HHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc-ccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 42210 01 123567899999973 4444 666 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChH
Q psy2681 130 ESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 130 ~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~ 179 (211)
.++..+.+.|+++ +.|||++|||++++... ||++++|++|+++. .|+.+
T Consensus 185 ~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 9999999999865 57999999999999886 89999999999864 56554
No 239
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=1.4e-30 Score=216.24 Aligned_cols=175 Identities=19% Similarity=0.266 Sum_probs=134.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++..|..+.+++.-. ++|||++ |+|+. +|++|+|..++ +..++|++|++. +++..+..++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~~~ 100 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV--EIPGVSNQFFLQ 100 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch--hccchhHHHHHH
Confidence 567788899994443 5999999 99995 69999997543 135999999864 455555444332
Q ss_pred hh------c-C---CC----HHHHHHHHHhCCCCCccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 67 KL------F-N---LP----YEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 67 ~~------~-~---~~----~~~~~~~l~~~gl~~~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.. . . .. ...+.++++.+++.+....+++. +|||||||||+||||++.+|+++||||||+|||+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~ 180 (248)
T PRK09580 101 TALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180 (248)
T ss_pred HhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 11 0 0 01 12346788889995322333554 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChHH
Q psy2681 132 IDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 132 ~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+..+.+.|+++ +.|||++|||++++... ++++++|++|+++. .|+++.
T Consensus 181 ~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~-~g~~~~ 232 (248)
T PRK09580 181 LKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTL 232 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE-eCCHHH
Confidence 99999988764 57999999999999887 89999999999864 677663
No 240
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=217.33 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=138.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 25 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 100 (249)
T PRK14253 25 PIPARQVTALI-GPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN--PFP-MSIY 100 (249)
T ss_pred EecCCCEEEEE-CCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC--cCc-ccHH
Confidence 45678888888 554 5999999 9999986 589887532 235999999875 565 7998
Q ss_pred HHHHhh---cCCC-H----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-Y----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. . +.+.++++.+++.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 179 (249)
T PRK14253 101 ENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179 (249)
T ss_pred HHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 887532 1211 1 23456778888743 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++||+++++..+|+++++|++|+++. .|+.+++
T Consensus 180 ~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 180 ATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999875 5666554
No 241
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=217.50 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=139.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|+ +|+|..+. +..++|++|++. +++ .|+.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 102 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN--PFP-KSIF 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc--cCc-CcHH
Confidence 466788888884443 5999999 99999997 59886431 346999999975 555 4888
Q ss_pred HHHHhh---cCCC-----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. .+.+.++++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (251)
T PRK14249 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181 (251)
T ss_pred HHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 887532 1211 12345567778864 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++|||++++.++||++++|++|+++. .++..++
T Consensus 182 ~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14249 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEI 233 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999865 4666554
No 242
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=6.6e-31 Score=215.70 Aligned_cols=167 Identities=25% Similarity=0.289 Sum_probs=134.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCH----
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY---- 73 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~---- 73 (211)
.+..|..+.+++.-. ++|||++ ++|+++|++|+|..+... +.+.... ..+++..|+.+++... ++...
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~~tv~enl~~~~~~~~~~~~~~~ 120 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPELTGRENIYLNGRLLGLSRKEID 120 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 456788888884443 5999999 999999999999876532 2222111 2256678998887532 22222
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
+.+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|||++|
T Consensus 121 ~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~s 199 (224)
T cd03220 121 EKIDEIIEFSELGDFIDL-PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS 199 (224)
T ss_pred HHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 235678899999876664 78999999999999999999999999999999999999999999998765 46999999
Q ss_pred cChHHHHhhCCeEEEEeCCceee
Q psy2681 151 HDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+.+++..+++++++|++|+++.
T Consensus 200 H~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 200 HDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999853
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=218.88 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=139.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..++ +..++|+||++. +++ .|+
T Consensus 42 ~i~~Ge~~~I~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 117 (267)
T PRK14237 42 QFEKNKITALI-GPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN--PFA-KSI 117 (267)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc--ccc-ccH
Confidence 35678888898 554 5999999 999986 5899986432 335999999864 555 599
Q ss_pred HHHHHhhc---CC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKLF---NL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~~---~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++.... +. . ...+.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 118 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 118 YENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH-KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99886321 11 1 133556788888842 344 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.++|+++ +.|||++||+++++.++||++++|++|+++. .|+..++
T Consensus 197 ~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14237 197 ISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNI 249 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999999999975 5666554
No 244
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-30 Score=215.58 Aligned_cols=174 Identities=22% Similarity=0.261 Sum_probs=135.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..+. +..++|++|++. ++ ..|+.+++....
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~ 99 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV--LF-NDTIGYNIRYGR 99 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh--hh-cchHHHHHhhcC
Confidence 466788889984443 5999999 9999999999997643 235999999974 55 468998885422
Q ss_pred -CCCHHHHHHHHHhC-----------CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMF-----------GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
......+...++.+ ++...... ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~ 178 (236)
T cd03253 100 PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE-RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178 (236)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 22222333333333 33333333 578999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|.++ +.|||++||+.+++.. |+++++|++|+++. .++.+++.
T Consensus 179 ~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~-~~~~~~~~ 223 (236)
T cd03253 179 ALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVE-RGTHEELL 223 (236)
T ss_pred HHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEe-eCCHHHHh
Confidence 99766 5699999999999975 99999999999864 56665554
No 245
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=5.7e-31 Score=209.52 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=121.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~~ 67 (211)
.++.|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. ..+++..|+.+++..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 567788889994443 5999999 9999999999997542 236999999853 236777888888743
Q ss_pred hcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG 144 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ 144 (211)
... ||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.
T Consensus 102 ~~~--------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 155 (182)
T cd03215 102 SSL--------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155 (182)
T ss_pred Hhh--------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 210 9999999999999999999999999999999999999999999865 56
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|+|++||+++++.++|+++++|++|++
T Consensus 156 tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 156 AVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999864
No 246
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=238.11 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=136.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHH--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEY-- 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~-- 64 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. ..+++++++.++
T Consensus 270 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 348 (491)
T PRK10982 270 DLHKGEILGIA-GLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL 348 (491)
T ss_pred EEeCCcEEEEe-cCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence 56778899999 665 5999999 9999999999998653 123899999853 235666766544
Q ss_pred ---HHhh---cCC-C----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 65 ---LMKL---FNL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 65 ---~~~~---~~~-~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+... ++. . ...+.++++.+++. +..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~ 427 (491)
T PRK10982 349 ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHR-TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAK 427 (491)
T ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcc-cccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHH
Confidence 2211 111 1 23456789999995 3444 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
..++++|.++ +.|||++|||++++.++||++++|.+|+++.
T Consensus 428 ~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 428 FEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 9999988654 6799999999999999999999999999874
No 247
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=218.38 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=137.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.. |++|+|..+. +..++|++|++. +++ .|+
T Consensus 32 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 107 (264)
T PRK14243 32 DIPKNQITAFI-GPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN--PFP-KSI 107 (264)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc--ccc-ccH
Confidence 35678889999 554 5999999 999876 4799987532 235999999874 555 488
Q ss_pred HHHHHhhc---CCC---HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 62 CEYLMKLF---NLP---YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 62 ~e~~~~~~---~~~---~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.+++.... ... .+.+..+++.+++.. ..+ +++.+||||||||++||||++.+|++|||||||+|||+.+
T Consensus 108 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 186 (264)
T PRK14243 108 YDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLK-QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIS 186 (264)
T ss_pred HHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 88875321 111 233455677777742 233 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe---------CCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~---------~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|.++ +.|||++||+++++.++||++++|+ +|+++. .|+..++.
T Consensus 187 ~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~~~~~ 247 (264)
T PRK14243 187 TLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDRTEKIF 247 (264)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCCHHHHH
Confidence 99999999876 3699999999999999999999998 788864 56766653
No 248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=5.8e-31 Score=215.84 Aligned_cols=164 Identities=21% Similarity=0.313 Sum_probs=132.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++....
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~~nl~~~~ 112 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV--LFA-RSLQDNIAYGL 112 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccH--HHh-hhHHHHhcccc
Confidence 456788888884443 5999999 9999999999997643 246999999874 554 58888875321
Q ss_pred C-CCHH---------HHHHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 N-LPYE---------KSRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ~-~~~~---------~~~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .... .+.++++.+ |+...... ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 191 (226)
T cd03248 113 QSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191 (226)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 1111 124567777 78766654 689999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.|+++ +.|||++|||++++.. ||++++|++|++
T Consensus 192 ~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 192 ALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 99876 3699999999999965 999999998863
No 249
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=216.00 Aligned_cols=173 Identities=22% Similarity=0.256 Sum_probs=136.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.++.|..+.+++.-. ++|||++ |+|+.+ | ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 103 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN--PFP-FSIY 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc--cCC-CcHH
Confidence 456788899994443 5999999 999865 5 589986432 236999999875 565 6888
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.+.++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~ 182 (252)
T PRK14255 104 ENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH-ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 887532 121 1 12345567777763 2333 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++..+.+.|+++ +.|||++|||++++.++|+++++|++|+++.+ ++..+
T Consensus 183 ~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 233 (252)
T PRK14255 183 SSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF-ADTKQ 233 (252)
T ss_pred HHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999876 46999999999999999999999999999753 54433
No 250
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=217.18 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=141.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.++.|..+.+++.-. ++|||++ |+|+++| ++|+|..+. +..++|++|++. ++ ..|+.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv~ 106 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN--PF-SMSIF 106 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc--cc-cccHH
Confidence 467888999994443 5999999 9999986 799986532 235999999975 45 58999
Q ss_pred HHHHhhc---CC---CHHHHHHHHHhCCCCCcc---ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 63 EYLMKLF---NL---PYEKSRRQLGMFGLPSYA---HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 63 e~~~~~~---~~---~~~~~~~~l~~~gl~~~~---~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
+++.... .. ....+.++++.+++.... ..+++.+|||||+||++||||++.+|+++||||||+|||+.++.
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~ 186 (261)
T PRK14263 107 DNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATR 186 (261)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 9885321 11 123567789999985321 12367899999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe--------CCceeeecCChHHHH
Q psy2681 134 ALAEAIKNY--QGGVILVSHDERLIRETDCELWALE--------KKNIRKFNGDFDDYR 182 (211)
Q Consensus 134 ~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~--------~g~i~~~~g~~~~~~ 182 (211)
.+.+.|+++ +.|||++||+++++.++||++++|+ +|+++. .|+.+++.
T Consensus 187 ~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~~~~~ 244 (261)
T PRK14263 187 RVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPTAQIF 244 (261)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCHHHHH
Confidence 999999876 4699999999999999999999996 788865 56766553
No 251
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=218.55 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=137.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.++.|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|+||++. +++ .++.
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~ 118 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN--PFP-KSIY 118 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc--ccc-ccHH
Confidence 467788999994443 5999999 9999863 589987532 246999999875 555 4888
Q ss_pred HHHHhhc---CC---CHHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 63 EYLMKLF---NL---PYEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 63 e~~~~~~---~~---~~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+++.... .. ..+.+.++++.+++. +..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 119 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~ 197 (274)
T PRK14265 119 ENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK-EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197 (274)
T ss_pred HHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 8875321 11 122345677888763 2333 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe---------CCceeeecCChHHH
Q psy2681 133 DALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~---------~g~i~~~~g~~~~~ 181 (211)
..+.++|+++ +.|||++|||++++.++||++++|+ +|+++. .|+..++
T Consensus 198 ~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~~~~ 256 (274)
T PRK14265 198 RQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPTEQM 256 (274)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eCCHHHH
Confidence 9999999876 4699999999999999999999997 788864 5776654
No 252
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=8.3e-31 Score=242.19 Aligned_cols=176 Identities=22% Similarity=0.252 Sum_probs=145.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +.+++|++|++. +|+ .|+.+|+...
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~--lF~-~Ti~~NI~~~ 438 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV--VLA-DTFLANVTLG 438 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCc--ccc-chHHHHHHhC
Confidence 3567899999994443 6999999 9999999999998653 457999999985 555 4899998755
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
...+++++.++++.+|+.+...+ .....||||||||++||||++.+|+++||||||++||+.+.+.+.+.
T Consensus 439 ~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~ 518 (592)
T PRK10790 439 RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518 (592)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 45566777788887776532211 12357999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ ++|+|+|||+++.+.. +|++++|++|+++. .|+.+++.
T Consensus 519 l~~~~~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~-~G~~~~L~ 562 (592)
T PRK10790 519 LAAVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAVE-QGTHQQLL 562 (592)
T ss_pred HHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEEE-EcCHHHHH
Confidence 9876 5799999999988875 79999999999975 67877654
No 253
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.3e-30 Score=262.29 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=149.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.++ |.+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+++...
T Consensus 952 ~I~~Gei~aLL-G~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~--L~~~LTV~E~L~f~~ 1028 (2272)
T TIGR01257 952 TFYENQITAFL-GHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNI--LFHHLTVAEHILFYA 1028 (2272)
T ss_pred EEcCCcEEEEE-CCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCc--CCCCCCHHHHHHHHH
Confidence 34566777788 665 5999999 9999999999997643 346999999875 78899999988532
Q ss_pred --cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.. .+++.++++.+||.+..++ ++++|||||||||+||+||+.+|+++||||||+|||+.+++.++++|++.
T Consensus 1029 ~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1029 QLKGRSWEEAQLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 2322 2346789999999887765 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.|||++|||++++..+|||+++|++|+++. .|+...++++
T Consensus 1108 ~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~-~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1108 RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC-SGTPLFLKNC 1150 (2272)
T ss_pred hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHHh
Confidence 5699999999999999999999999999864 6777766543
No 254
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=206.34 Aligned_cols=162 Identities=28% Similarity=0.400 Sum_probs=138.8
Q ss_pred Ccccccc-ccCcccCCcceEEec-----------------CCeEEEEEeCCCCCCCCCCCCHHHHHHhh----cCCCH--
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKS-----------------PRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY-- 73 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~-----------------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~----~~~~~-- 73 (211)
++|||++ +.=+..|.+|+.... .++.+|++||... ++|.+||.+|+... .+.++
T Consensus 40 gkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~--lwphltv~enlieap~kv~gl~~~q 117 (242)
T COG4161 40 GKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN--LWPHLTVQENLIEAPCRVLGLSKDQ 117 (242)
T ss_pred chHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc--cCchhHHHHHHHhhhHHHhCCCHHH
Confidence 5899999 888889999998642 1457999999864 89999999998532 23433
Q ss_pred --HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 74 --EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 74 --~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
.++.++|+++.+.++.++ .+-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++ |.|-++
T Consensus 118 a~~~a~ellkrlrl~~~adr-~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvi 196 (242)
T COG4161 118 ALARAEKLLKRLRLKPYADR-YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVI 196 (242)
T ss_pred HHHHHHHHHHHhcccccccc-CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEE
Confidence 345689999999998886 77899999999999999999999999999999999999999999999887 569999
Q ss_pred EecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||..+.+.+.+.+++.|++|++++ .|+.+-+.+
T Consensus 197 vthev~va~k~as~vvyme~g~ive-~g~a~~ft~ 230 (242)
T COG4161 197 VTHEVEVARKTASRVVYMENGHIVE-QGDASCFTE 230 (242)
T ss_pred EEeehhHHHhhhhheEeeecCeeEe-ecchhhccC
Confidence 9999999999999999999999986 577665543
No 255
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.9e-30 Score=208.67 Aligned_cols=161 Identities=22% Similarity=0.249 Sum_probs=127.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +++|++|++. ++ ..|+.+++............+.+
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~ 101 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVI 101 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHH
Confidence 567788888884443 5999999 9999999999998876 7999999975 45 56999988643222233333334
Q ss_pred HhCCC-----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HHHhc---CCe
Q psy2681 81 GMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNY---QGG 145 (211)
Q Consensus 81 ~~~gl-----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~---~~t 145 (211)
+.+++ +..... ++.+||+|||||++||||++.+|+++||||||++||+.+++.+.+ ++.+. +.|
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~-~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~t 180 (204)
T cd03250 102 KACALEPDLEILPDGDLTEIGE-KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180 (204)
T ss_pred HHcCcHHHHHhccCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCE
Confidence 44333 223333 578999999999999999999999999999999999999999987 45433 469
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 146 VILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
||++||+++.+.. ++++++|++|+
T Consensus 181 vi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 181 RILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 9999999999987 99999999874
No 256
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=1e-30 Score=246.04 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=145.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ ++.+||++|++. +| +.|+.+|+...
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTi~eNi~l~ 576 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIF--LF-EGTVRDNLTLW 576 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCCh--hh-hccHHHHhhCC
Confidence 4577899999995553 5999999 9999999999998653 567999999975 44 56999999643
Q ss_pred c-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ..+.+++.++++..++.+...+ .....||||||||++||||++++|+++|||||||+||+.+...+.+
T Consensus 577 ~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~ 656 (710)
T TIGR03796 577 DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656 (710)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHH
Confidence 2 3456677777777666432211 1346799999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|++.+.|+|+|||+++.+.. +|++++|++|+++. .|+.+++.+
T Consensus 657 ~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~-~G~~~~Ll~ 700 (710)
T TIGR03796 657 NLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQ-RGTHEELWA 700 (710)
T ss_pred HHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEE-ecCHHHHHH
Confidence 999888899999999999865 89999999999975 688776643
No 257
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=219.11 Aligned_cols=174 Identities=21% Similarity=0.281 Sum_probs=140.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| ++|+|..+. +..++|++|++. +++ .|+.
T Consensus 43 ~i~~Ge~~~I~-G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~ 118 (276)
T PRK14271 43 GFPARAVTSLM-GPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN--PFP-MSIM 118 (276)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc--cCC-ccHH
Confidence 45677888888 554 5999999 9999985 699987532 236999999875 566 7999
Q ss_pred HHHHhh---cC-CCHH----HHHHHHHhCCCCCc----cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FN-LPYE----KSRRQLGMFGLPSY----AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~-~~~~----~~~~~l~~~gl~~~----~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .. .... .+.++++.+++... .+ +.+.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 119 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~ 197 (276)
T PRK14271 119 DNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPT 197 (276)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 887532 11 1222 24567888998642 33 468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++..++.
T Consensus 198 ~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 250 (276)
T PRK14271 198 TTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLF 250 (276)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999876 4699999999999999999999999999875 56666554
No 258
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.1e-30 Score=262.72 Aligned_cols=176 Identities=22% Similarity=0.261 Sum_probs=148.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.|++..
T Consensus 1962 I~~GEi~gLL-G~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~--L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257 1962 VRPGECFGLL-GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDA--IDDLLTGREHLYLYAR 2038 (2272)
T ss_pred EcCCcEEEEE-CCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEecccc--CCCCCCHHHHHHHHHH
Confidence 4567778888 665 5999999 9999999999998643 246999999865 7888999998753
Q ss_pred hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.+. +.+.++++.+||.+..++ ++++|||||||||+||+||+.+|+++||||||+|||+.+++.+++.|++.
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk-~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGLSLYADR-LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 233332 235678999999877764 88999999999999999999999999999999999999999999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.|||++||++++++.+||++++|.+|+++. .|+..+++++
T Consensus 2118 ~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~-~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2118 REGRAVVLTSHSMEECEALCTRLAIMVKGAFQC-LGTIQHLKSK 2160 (2272)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHHH
Confidence 5699999999999999999999999999864 6777766543
No 259
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=7.5e-31 Score=244.60 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=142.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+..|.++.+++.-. ++|||+| ++|+++|..|+|..++ |++||||+|++. ...-|+.||+....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~---Lf~gSI~eNi~l~~p 572 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF---LFSGSIRENIALGNP 572 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch---hhcCcHHHHHhcCCC
Confidence 46789999996665 5999999 9999999999998653 678999999974 45568999987543
Q ss_pred CCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+.+++.+++...|..+ .... .-..||||||||++||||++++|++||||||||+||+.+.+.+.+.
T Consensus 573 ~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~ 651 (709)
T COG2274 573 EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651 (709)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH
Confidence 334455655555554432 2222 3567999999999999999999999999999999999999999999
Q ss_pred HHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.++. .|+|+|||....+. .||++++|++|++++ .|+.+++..
T Consensus 652 L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~-~gs~~ell~ 696 (709)
T COG2274 652 LLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE-QGSHEELLA 696 (709)
T ss_pred HHHHhcCCeEEEEEccchHhh-hccEEEEccCCceec-cCCHHHHHH
Confidence 99884 79999999999986 569999999999975 788877654
No 260
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=217.07 Aligned_cols=173 Identities=24% Similarity=0.265 Sum_probs=139.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++. |+
T Consensus 47 ~i~~Ge~~~I~-G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv 122 (272)
T PRK14236 47 RIPKNRVTAFI-GPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN--PFPK-SI 122 (272)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc--cCcc-cH
Confidence 45678888888 554 5999999 999987 4899987432 346999999874 5664 89
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . .+.+.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 123 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~ 201 (272)
T PRK14236 123 YENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLH-ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201 (272)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 8887532 221 1 133567788888853 333 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++||+++++.++|+++++|++|+++. .|+..++
T Consensus 202 ~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 254 (272)
T PRK14236 202 ISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTL 254 (272)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHH
Confidence 9999999999876 4699999999999999999999999999864 5666554
No 261
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-30 Score=205.57 Aligned_cols=137 Identities=31% Similarity=0.386 Sum_probs=119.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.+..|..+.+++.-. ++|||++ ++|..+|++|+|..+. +..++|++|++. +++..++.+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~---- 95 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS--LYENLTVRENLK---- 95 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--cccCCcHHHHhh----
Confidence 456788888884443 5999999 9999999999997543 246899999875 677788887762
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|
T Consensus 96 --------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 149 (173)
T cd03230 96 --------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149 (173)
T ss_pred --------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999999999999999875 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCce
Q psy2681 148 LVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
++|||.+++..+|+++++|++|++
T Consensus 150 i~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 150 LSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999998863
No 262
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=215.89 Aligned_cols=175 Identities=18% Similarity=0.193 Sum_probs=139.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ ++|+.+|+ +|+|..+. +..++|++|++. +++ .|+.
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~ 105 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN--LFP-MSVY 105 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc--cCc-ccHH
Confidence 456788889994443 5999999 99999985 78775421 235999999864 566 7998
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.++++.+++.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~ 184 (261)
T PRK14258 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIH-KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184 (261)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 887532 121 1 123567888998743 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeC-----CceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK-----KNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~-----g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++ |+++. .++.+++.
T Consensus 185 ~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~~ 244 (261)
T PRK14258 185 ASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLTKKIF 244 (261)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE-eCCHHHHH
Confidence 999999998763 57999999999999999999999999 88864 57766653
No 263
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.8e-31 Score=208.81 Aligned_cols=153 Identities=25% Similarity=0.345 Sum_probs=131.5
Q ss_pred Ccccccc-ccCcccCCcceEEecCC------eEEEEEeCCCCCCCCCCCCHHHHHHh---hcCCCH----HHHHHHHHhC
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMF 83 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~~~~----~~~~~~l~~~ 83 (211)
++|||++ ++|+++|+.|+|..+.+ ..-|.|||++. +.|++|+.+|+.. ..+..+ +.+.+.+..+
T Consensus 43 GKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~V 120 (259)
T COG4525 43 GKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120 (259)
T ss_pred cHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4899999 99999999999987653 35799999976 8999999999864 234432 3467889999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChHHHHhh
Q psy2681 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRET 159 (211)
Q Consensus 84 gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~ 159 (211)
||.+..++ ++.+|||||||||.|||||+.+|++|+||||+++||.-+++.+.++|.+ .++.+++||||++++.-+
T Consensus 121 gL~~~~~~-~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 121 GLEGAEHK-YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred Cccccccc-ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 99987764 8999999999999999999999999999999999999999998888754 377999999999999999
Q ss_pred CCeEEEEeC--Cceee
Q psy2681 160 DCELWALEK--KNIRK 173 (211)
Q Consensus 160 ~~~v~~l~~--g~i~~ 173 (211)
++++++|.. |+++.
T Consensus 200 atrLvvlsp~pgRvv~ 215 (259)
T COG4525 200 ATRLVVLSPGPGRVVE 215 (259)
T ss_pred hheeEEecCCCceeeE
Confidence 999999985 45543
No 264
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=1.7e-30 Score=239.88 Aligned_cols=175 Identities=23% Similarity=0.293 Sum_probs=142.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ +.|++ |++|+|..++ ++.|+|++|++. +| +.|+.+|+...
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--LF-~~TI~eNI~~g 446 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ--LP-HGTLRDNVLLG 446 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCc--CC-CcCHHHHhhcC
Confidence 3467889999995443 6999999 99999 9999998654 457999999985 55 46999998754
Q ss_pred -cCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.+.+++++.++++..++.+ .... ....||||||||++||||++.+|+++|||||||+||+++.+.+.
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2356677777666665532 2222 34579999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. ++|+|+|||+++.+.. +|++++|++|++++ .|+.+++.+
T Consensus 526 ~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G~~~eL~~ 572 (588)
T PRK11174 526 QALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QGDYAELSQ 572 (588)
T ss_pred HHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cCCHHHHHh
Confidence 999876 5799999999998865 79999999999975 688777653
No 265
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=215.46 Aligned_cols=173 Identities=21% Similarity=0.194 Sum_probs=138.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..+. +..++|++|++. +++ .|+
T Consensus 29 ~i~~Ge~~~l~-G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv 104 (259)
T PRK14260 29 DIYRNKVTAII-GPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN--PFP-MSI 104 (259)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc--cCC-ccH
Confidence 34567888888 554 5999999 9999885 489887542 235999999875 565 899
Q ss_pred HHHHHhh---cC-CC----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FN-LP----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~-~~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+ .. .+.+.++++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 105 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 105 YENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLN-KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP 183 (259)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9987532 11 12 12356778888874 2344 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe-----CCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE-----KKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~-----~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++||+++++.++||++++|+ +|+++. .|+..++
T Consensus 184 ~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~ 241 (259)
T PRK14260 184 IATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQI 241 (259)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999997 488864 5676654
No 266
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=2.9e-30 Score=210.70 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=127.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.++.|..+.+++.-. ++|||++ |+|+++|++|+|.... +..++|++|++. ++ +.|+.+++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~t~~~nl 99 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW--LL-NATVEENI 99 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc--cc-cccHHHHH
Confidence 467788889994443 5999999 9999999999997532 245999999874 45 57888888
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCc-----------cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 66 MKLFNLPYEKSRRQLGMFGLPSY-----------AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
............++++.+++.+. .. .++..|||||||||+||||++.+|+++||||||++||+.++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 178 (218)
T cd03290 100 TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178 (218)
T ss_pred hhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHH
Confidence 64322233344556666665321 22 3678999999999999999999999999999999999999998
Q ss_pred HHH--HHHh---cCCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 135 LAE--AIKN---YQGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 135 l~~--~l~~---~~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+.+ +++. .+.|+|++||+.+.+. .||++++|++|.
T Consensus 179 l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 179 LMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 887 4443 3579999999999985 689999998873
No 267
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.4e-30 Score=209.90 Aligned_cols=159 Identities=27% Similarity=0.300 Sum_probs=131.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
+..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|.+. +++..|+.+++... .+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~ 102 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA--MKPALTVAENLEFWAAFLG 102 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCc--CCCCCcHHHHHHHHHHhcC
Confidence 45678888884443 5999999 9999999999997653 235899998754 56778999987532 22
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
.....+.++++.+|+....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 181 (207)
T PRK13539 103 GEELDIAAALEAVGLAPLAH-LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181 (207)
T ss_pred CcHHHHHHHHHHcCCHHHHc-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 33456788999999986554 488999999999999999999999999999999999999999999999865 57999
Q ss_pred EEecChHHHHhhCCeEEEEe
Q psy2681 148 LVSHDERLIRETDCELWALE 167 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~ 167 (211)
++||+.+++.. ++++.+.
T Consensus 182 i~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 182 AATHIPLGLPG--ARELDLG 199 (207)
T ss_pred EEeCCchhhcc--CcEEeec
Confidence 99999999986 7877664
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=214.67 Aligned_cols=173 Identities=23% Similarity=0.263 Sum_probs=138.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC---------------CeEEEEEeCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDD 59 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~ 59 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++.
T Consensus 38 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~- 113 (265)
T PRK14252 38 MVHEKQVTALI-GPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN--PFPK- 113 (265)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc--CCcc-
Confidence 45678888898 554 5999999 9999875 789987531 235899999875 5664
Q ss_pred CHHHHHHhh---cCCC-----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 60 TPCEYLMKL---FNLP-----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 60 t~~e~~~~~---~~~~-----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
|+.+++... .+.. .+.+.++++.+++. +..+ +++.+|||||+||++||||++.+|+++||||||+||
T Consensus 114 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gL 192 (265)
T PRK14252 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLG-DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSAL 192 (265)
T ss_pred hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 888887532 1211 23456677788764 2333 478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 128 DIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 128 D~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+.++..+.+.|+++ +.|||+|||+++++.++|+++++|++|+++. .|+.+++
T Consensus 193 D~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 193 DPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999876 3699999999999999999999999999975 4665554
No 269
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=1.9e-30 Score=204.89 Aligned_cols=134 Identities=28% Similarity=0.443 Sum_probs=114.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~l---- 96 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE--LFS-GSIAENI---- 96 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc--ccc-CcHHHHC----
Confidence 456678888884443 5999999 9999999999997643 346899999874 555 4777664
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeE
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV 146 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ti 146 (211)
||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.||
T Consensus 97 ---------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 149 (173)
T cd03246 97 ---------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149 (173)
T ss_pred ---------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999999999999999765 4699
Q ss_pred EEEecChHHHHhhCCeEEEEeCCce
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|++|||++++. .|+++++|++|++
T Consensus 150 i~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 150 IVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEEeCCHHHHH-hCCEEEEEECCCC
Confidence 99999999985 7999999999864
No 270
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=218.91 Aligned_cols=176 Identities=20% Similarity=0.210 Sum_probs=139.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+
T Consensus 66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv 142 (305)
T PRK14264 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN--PFP-KSI 142 (305)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc--ccc-ccH
Confidence 3567788888984443 5999999 999986 6899997542 236999999874 555 589
Q ss_pred HHHHHhhc---------------CCC-----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy2681 62 CEYLMKLF---------------NLP-----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDI 117 (211)
Q Consensus 62 ~e~~~~~~---------------~~~-----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~l 117 (211)
.+++.... ... .+.+.++++.+++. +..+ +++.+|||||||||+|||||+.+|++
T Consensus 143 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~l 221 (305)
T PRK14264 143 RENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEV 221 (305)
T ss_pred HHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc-CccccCCHHHHHHHHHHHHHhcCCCE
Confidence 98876321 010 23356778888874 2334 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeE-EEEeCCceeeecCChHHHH
Q psy2681 118 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-WALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 118 llLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v-~~l~~g~i~~~~g~~~~~~ 182 (211)
|||||||+|||+.++..+.++|+++ +.|||++|||++++..+|+++ ++|++|+++. .|+.+++.
T Consensus 222 LLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~-~g~~~~~~ 288 (305)
T PRK14264 222 ILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE-YDDTDKIF 288 (305)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE-eCCHHHHH
Confidence 9999999999999999999999876 469999999999999999997 5679999875 56766553
No 271
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=231.52 Aligned_cols=173 Identities=25% Similarity=0.349 Sum_probs=143.2
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|.++.++ |-. ++|||++ ++|+.+|++|+|+.++ +++++|++|+|. + ..-|+.||+....
T Consensus 344 ~~~g~~talv-G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~--l-f~gTireNi~l~~ 419 (559)
T COG4988 344 IKAGQLTALV-GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY--L-FAGTIRENILLAR 419 (559)
T ss_pred ecCCcEEEEE-CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc--c-ccccHHHHhhccC
Confidence 4567888898 553 5999999 9999999999998763 467999999985 4 4468899986443
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc-----CCC----CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT-----IPI----RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~-----~~~----~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
+.+++.+.+++++.|+.+...+ ..+ ..|||||+|||++||||+.+++++|+||||+|||.++...+.+.|
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l 499 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHH
Confidence 3567788888888877653331 123 449999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+. ++|+|++||++..+.. +|+|++|++|+++. .|+.+++.
T Consensus 500 ~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~-~g~~~~L~ 542 (559)
T COG4988 500 QELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVE-QGTHEELS 542 (559)
T ss_pred HHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceec-cCCHHHHh
Confidence 876 5799999999999976 59999999999975 67777653
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=6.5e-30 Score=213.79 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=135.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++ .|+.+++....
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~ 119 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPI--LFS-GSIRFNLDPEC 119 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCc--ccc-cHHHHhcCcCC
Confidence 456788888994443 5999999 9999999999997542 346999999874 554 47777764221
Q ss_pred CCCHHHHHH---------HHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRR---------QLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~---------~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
......+.+ .++.+ |++..... ++.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 198 (257)
T cd03288 120 KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198 (257)
T ss_pred CCCHHHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 112222333 33333 45444443 5789999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.++ +.|||++||+++.+.. |+++++|++|+++. .|+.+++.
T Consensus 199 l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~-~g~~~~~~ 242 (257)
T cd03288 199 VMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE-CDTPENLL 242 (257)
T ss_pred HHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE-eCCHHHHH
Confidence 9875 5799999999999986 99999999999874 57766654
No 273
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-30 Score=213.02 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=137.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ |+|+.. | ++|+|..++ +..++|++|++. +++ .|+.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e 105 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN--PFP-KSIYE 105 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc--cCc-ccHHH
Confidence 55677888884443 5999999 999875 3 489886432 235999999875 565 49999
Q ss_pred HHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 64 YLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 64 ~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
++... .+. . ...+.++++.+++.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.+
T Consensus 106 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 184 (253)
T PRK14261 106 NVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIA 184 (253)
T ss_pred HHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 87532 111 1 123556788888742 234 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|+++ +.|||++||+++++.++||++++|++|+++. .|+..++.
T Consensus 185 ~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14261 185 TAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE-FDKTTQIF 236 (253)
T ss_pred HHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE-cCCHHHHH
Confidence 99999999876 4699999999999999999999999999864 56665543
No 274
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=9.4e-31 Score=209.37 Aligned_cols=150 Identities=27% Similarity=0.386 Sum_probs=122.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++...++ ..|+.+++.
T Consensus 14 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~ 91 (190)
T TIGR01166 14 AAERGEVLALL-GANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVA 91 (190)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHH
Confidence 56788889888 554 5999999 9999999999997532 2358999998632234 468888875
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+... +.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 170 (190)
T TIGR01166 92 FGPLNLGLSEAEVERRVREALTAVGASGLRER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170 (190)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 32 22222 345678999999876664 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHH
Q psy2681 140 KNY---QGGVILVSHDERL 155 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~ 155 (211)
+++ +.|||++|||+++
T Consensus 171 ~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 171 RRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHcCCEEEEEeecccc
Confidence 875 5699999999875
No 275
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7e-30 Score=220.67 Aligned_cols=174 Identities=20% Similarity=0.205 Sum_probs=140.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEec-------------CCeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKS-------------PRLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~-------------~~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|.++.+++.-. ++|||++ |+|+.. |++|+|..+ .+..++|+||++. ++ ..|+.
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~--~~-~~ti~ 180 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT--PF-EMSIF 180 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cC-CCcHH
Confidence 466788999994443 5999999 999986 579998642 1346999999975 44 47999
Q ss_pred HHHHhhc---CCCHH-----HHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKLF---NLPYE-----KSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~~---~~~~~-----~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+|+.... +.... .+.++++.+++.+ ... +++.+||||||||++||||++.+|++|||||||++||+.
T Consensus 181 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~ 259 (329)
T PRK14257 181 DNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259 (329)
T ss_pred HHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 9986321 12221 2456788888742 334 378999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+...+.+.|+++ +.|||+|||+++.+.++||++++|++|++++ .|++.++
T Consensus 260 ~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~~l 311 (329)
T PRK14257 260 ATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETKTI 311 (329)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999976 5777665
No 276
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=1e-30 Score=207.73 Aligned_cols=151 Identities=28% Similarity=0.404 Sum_probs=118.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+.. .+ .+ ..+. .....+.. +.+++
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~-~~---~~-----~~~~-~~~~~i~~--------~~q~l 82 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK-DL---AS-----LSPK-ELARKIAY--------VPQAL 82 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-EC---Cc-----CCHH-HHHHHHhH--------HHHHH
Confidence 355678888884443 5999999 99999999999987542 11 00 0000 00111110 11288
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|+|++||+++++
T Consensus 83 ~~~gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 83 ELLGLAHLADR-PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHcCCHhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 88999876654 78999999999999999999999999999999999999999999999765 46999999999999
Q ss_pred HhhCCeEEEEeCCcee
Q psy2681 157 RETDCELWALEKKNIR 172 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~ 172 (211)
.++||++++|++|+++
T Consensus 162 ~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 162 ARYADRVILLKDGRIV 177 (180)
T ss_pred HHhCCEEEEEECCEEE
Confidence 9999999999999875
No 277
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=220.58 Aligned_cols=175 Identities=19% Similarity=0.259 Sum_probs=145.0
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
++.|.-+.+++-=. ++|||=. +.+++++. |+|...+ +.++-.|||+|+-++.|.+|+.+.+..
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~E 388 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhh
Confidence 35566677773333 5899988 89998776 8887432 457899999998889999999887753
Q ss_pred h---c--CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 68 L---F--NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 68 ~---~--~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. . ..+ .+++.++|+.+||+....++++.++|||||||++||||++.+|++++||||||+||...+.++.++
T Consensus 389 GL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 389 GLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH
Confidence 2 1 122 345778999999987666678999999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
|+++ +.+.++||||+..+..+|++++||++|++++ .|+.++
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE-~G~~~~ 513 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE-QGPTEA 513 (534)
T ss_pred HHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee-eCCHHH
Confidence 9865 5699999999999999999999999999986 465544
No 278
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=9.4e-30 Score=228.88 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=140.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCHH--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE-- 74 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~~-- 74 (211)
+.++.|..+.+++.-. ++|||++ |+|+++|++|+|..+... .++.+.+ .+.+.+|+.+++... .+....
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~--~~i~~~~--~l~~~lTV~EnL~l~~~~~~~~~~e~ 120 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA--ALIAISS--GLNGQLTGIENIELKGLMMGLTKEKI 120 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe--eeEEecc--ccCCCCcHHHHHHhhhhhcCCCHHHH
Confidence 3567888999994443 5999999 999999999999876532 2233332 256678999987531 223222
Q ss_pred --HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 75 --KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 75 --~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
.+.++++.+++.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++
T Consensus 121 ~e~i~elLe~lgL~~~ld~-~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIV 199 (549)
T PRK13545 121 KEIIPEIIEFADIGKFIYQ-PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFI 199 (549)
T ss_pred HHHHHHHHHHcCChhHhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34568899999876664 78999999999999999999999999999999999999999999999765 5799999
Q ss_pred ecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||++++..+||++++|.+|+++. .|+.+++.
T Consensus 200 SHdl~~i~~l~DrIivL~~GkIv~-~G~~~el~ 231 (549)
T PRK13545 200 SHSLSQVKSFCTKALWLHYGQVKE-YGDIKEVV 231 (549)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999864 56665543
No 279
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=3.2e-30 Score=207.62 Aligned_cols=158 Identities=26% Similarity=0.332 Sum_probs=128.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+++..|..+.+++.-. ++|||++ |+|.++|++|+|..+. +..++|++|++. +++..|+.+++....
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~ 98 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG--LKPELSALENLHFWA 98 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcc--cccCCcHHHHHHHHH
Confidence 3567788999994332 6999999 9999999999997643 246899999764 677789999875321
Q ss_pred ---CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C
Q psy2681 70 ---NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q 143 (211)
Q Consensus 70 ---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~ 143 (211)
......+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 177 (198)
T TIGR01189 99 AIHGGAQRTIEDALAAVGLTGFEDL-PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177 (198)
T ss_pred HHcCCcHHHHHHHHHHcCCHHHhcC-ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 2223457789999999876654 78999999999999999999999999999999999999999999999875 5
Q ss_pred CeEEEEecChHHHHhhCCeEE
Q psy2681 144 GGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~ 164 (211)
.|||++||+...+. |++++
T Consensus 178 ~tii~~sH~~~~~~--~~~~~ 196 (198)
T TIGR01189 178 GIVLLTTHQDLGLV--EAREL 196 (198)
T ss_pred CEEEEEEccccccc--ceEEe
Confidence 79999999986553 35554
No 280
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.2e-30 Score=203.86 Aligned_cols=136 Identities=32% Similarity=0.379 Sum_probs=116.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
++.|..+.++ |-+ ++|||++ ++|+++|++|+|..+. +..++|++|++. +++..|+.+++..
T Consensus 23 i~~G~~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~ 99 (178)
T cd03229 23 IEAGEIVALL-GPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA--LFPHLTVLENIAL 99 (178)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc--cCCCCCHHHheee
Confidence 4677888888 554 6999999 9999999999997432 236899999875 6677788776531
Q ss_pred hcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q 143 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~ 143 (211)
. ||||||||++||||++.+|+++||||||+|||+.++..+.++|+++ +
T Consensus 100 ~----------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 151 (178)
T cd03229 100 G----------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151 (178)
T ss_pred c----------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 9999999999999999999999999999999999999999999765 4
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
.|+|++|||++++..+||++++|++|+
T Consensus 152 ~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 799999999999999999999998874
No 281
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=237.29 Aligned_cols=177 Identities=23% Similarity=0.257 Sum_probs=143.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ |+|+++|++|+|..++ +..++|+||++. +| +.|+.+|+...
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~ 440 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVH--LF-NDTIANNIAYA 440 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCce--ee-cchHHHHHhcC
Confidence 3567889999995554 5999999 9999999999998653 357999999975 45 46899999743
Q ss_pred c--CCCHHHHHHHHHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+++++.++++..|+.+... . ....+||||||||++||||++++|+++||||||++||+++...+.
T Consensus 441 ~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~ 520 (582)
T PRK11176 441 RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 (582)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence 2 245677777777777543211 1 123569999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 521 ~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e-~g~~~~l~~ 567 (582)
T PRK11176 521 AALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVE-RGTHAELLA 567 (582)
T ss_pred HHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 999876 479999999998875 589999999999975 677776543
No 282
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=1.5e-29 Score=214.26 Aligned_cols=173 Identities=22% Similarity=0.262 Sum_probs=133.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|.++.+++.-. ++|||++ |+|+++|++|+|..+. .++|++|++. +++ .++.+++............+.+
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~l 133 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSW--IMP-GTIKENIIFGVSYDEYRYKSVV 133 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccc--ccc-cCHHHHhhcccccCHHHHHHHH
Confidence 467788999995543 5999999 9999999999998765 6999999864 555 4888887532222222333444
Q ss_pred HhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeEE
Q psy2681 81 GMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~tii 147 (211)
+.+++.+... ..++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+ ..+ +.|||
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIi 213 (282)
T cd03291 134 KACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRI 213 (282)
T ss_pred HHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 5455432111 1245799999999999999999999999999999999999999998754 433 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++||+++++. .|+++++|++|+++. .|+..++.
T Consensus 214 iisH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 246 (282)
T cd03291 214 LVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (282)
T ss_pred EEeCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999985 799999999999864 56666554
No 283
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1.3e-29 Score=206.64 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=136.8
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE-ecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE 74 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~-~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~~ 74 (211)
+.++.+..+.++ |-+ ++|||++ |+|+++|++|+|. .... .+ .+.+.+ .+++.+|+.+++... ++....
T Consensus 8 ~~i~~Ge~~~l~-G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~-~~-~~~~~~--~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 8 FVMGYHEHIGIL-AAPGSGKTTLTRLLCGLDAPDEGDFIGLRGD-AL-PLGANS--FILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCccCCCCCEEEecCc-ee-cccccc--ccCCcCcHHHHHHHHHHHcCCCHH
Confidence 467889999999 554 5999999 9999999999996 4432 11 122333 367888999988532 233333
Q ss_pred HH-HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh-c-CCeEEEEec
Q psy2681 75 KS-RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-Y-QGGVILVSH 151 (211)
Q Consensus 75 ~~-~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~-~~tiiivsH 151 (211)
.. ..+.+.++++...++ ++.+||+|||||++||||++.+|+++||||||+++|+.++..+.+.+.+ . +.|+|++||
T Consensus 83 ~~~~~~~~~~~l~~~~~~-~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTD-RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHhChhHHhhc-hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 33 334466778766554 7899999999999999999999999999999999999999999998754 3 468999999
Q ss_pred ChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 152 DERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++.++..+||++++|++|+++ +.++..+.+
T Consensus 162 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 191 (213)
T PRK15177 162 NPRLIKEHCHAFGVLLHGKIT-MCEDLAQAT 191 (213)
T ss_pred CHHHHHHhcCeeEEEECCeEE-EeCCHHHHH
Confidence 999999999999999999986 467766554
No 284
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.5e-30 Score=211.70 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=139.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ |+|+.. |++|+|..++ +..++|+||++. +++ .++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~ 101 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN--PFP-KSIF 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc--cCc-chHH
Confidence 456778888884443 6999999 999864 4899987432 235999999875 565 4888
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+|+.. ..+ +++.+||+|||||++||||++.+|+++||||||+|||+.
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~ 180 (250)
T PRK14266 102 DNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180 (250)
T ss_pred HHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHH
Confidence 887532 111 1 133566788888743 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.++|+++ +.|||++||+++++..+|+++++|++|+++. .|+.+++.
T Consensus 181 ~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14266 181 STTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE-SGLTDQIF 233 (250)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE-eCCHHHHH
Confidence 999999999875 4699999999999999999999999999864 57776653
No 285
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=9.4e-30 Score=201.78 Aligned_cols=138 Identities=28% Similarity=0.357 Sum_probs=117.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
+..|..+.+++.-. ++|||++ ++|+.+|++|+|..+. +..++|++|++. +++ .|+.+++
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~i------ 95 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--LFD-TTLRNNL------ 95 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe--eec-ccHHHhh------
Confidence 45677888884443 5999999 9999999999997654 245899999864 443 5776664
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILV 149 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiiv 149 (211)
+.+||+|||||++||||++.+|+++||||||++||+.++..+.+.|.++ +.|||++
T Consensus 96 ----------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~ 153 (178)
T cd03247 96 ----------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153 (178)
T ss_pred ----------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5689999999999999999999999999999999999999999999876 5699999
Q ss_pred ecChHHHHhhCCeEEEEeCCceee
Q psy2681 150 SHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
||+.+++. .|+++++|++|+++.
T Consensus 154 sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 154 THHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred ecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999996 689999999999863
No 286
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=7.9e-30 Score=239.60 Aligned_cols=176 Identities=26% Similarity=0.355 Sum_probs=143.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +| +.|+.+|+....
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~--lf-~~TI~eNi~~~~ 563 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR--LF-YGTLRDNIALGA 563 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChh--hh-hhhHHHHHhCCC
Confidence 467789999995554 5999999 9999999999998653 457999999985 44 469999997443
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+.+++.++++..++.+.... .....||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 564 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~ 643 (694)
T TIGR03375 564 PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 3456777777777765432211 13457999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|+|+|||+++.+. .||++++|++|++++ .|+.+++.+
T Consensus 644 l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e-~G~~~eLl~ 688 (694)
T TIGR03375 644 LKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVA-DGPKDQVLE 688 (694)
T ss_pred HHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEe-eCCHHHHHH
Confidence 9876 579999999999885 689999999999975 678776543
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=7.2e-30 Score=234.77 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=143.6
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. + .+.|+.+|+...
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l-f~~Ti~~Ni~~~ 429 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV--L-FNDTIANNIAYG 429 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc--c-ccccHHHHHhcC
Confidence 5677899999995553 6999999 9999999999998654 456999999985 4 456999998744
Q ss_pred c--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.++++.+|+.+...+ ..-..||||||||++||||++.+|++++|||||++||+.+.+.+.
T Consensus 430 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~ 509 (571)
T TIGR02203 430 RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509 (571)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 2 3567777788888776532221 023469999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|.+. ++|+|+|||+...+. .||+++++++|+++. .|+.+++.
T Consensus 510 ~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~-~g~~~~l~ 555 (571)
T TIGR02203 510 AALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVE-RGTHNELL 555 (571)
T ss_pred HHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEe-eCCHHHHH
Confidence 999886 479999999998874 589999999999875 57766553
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.7e-30 Score=233.10 Aligned_cols=170 Identities=17% Similarity=0.237 Sum_probs=133.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|..+| ++|+|..++ +..++|++|++........++.+++.
T Consensus 282 ~i~~Ge~~~i~-G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 282 QVNPGEHWQIV-GPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 35678888888 554 5999999 9998765 699987542 23599999986411112345655543
Q ss_pred hh-c------C-CC---HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 67 KL-F------N-LP---YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 67 ~~-~------~-~~---~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.. . . .. .+.+.++++.+|+.+ ..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 439 (490)
T PRK10938 361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-APFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQL 439 (490)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHH
Confidence 21 1 1 11 235678999999986 555 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---C-CeEEEEecChHHHHh-hCCeEEEEeCCceeee
Q psy2681 135 LAEAIKNY---Q-GGVILVSHDERLIRE-TDCELWALEKKNIRKF 174 (211)
Q Consensus 135 l~~~l~~~---~-~tiiivsHd~~~~~~-~~~~v~~l~~g~i~~~ 174 (211)
+.++|+++ + .|||+||||++++.+ +|+++++|++|+++.+
T Consensus 440 l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 440 VRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999875 3 369999999999987 5899999999998654
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=9.7e-30 Score=205.22 Aligned_cols=156 Identities=24% Similarity=0.247 Sum_probs=128.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++..|+.+++....
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSG--INPYLTLRENCLYDIH 100 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccc--cCcCCCHHHHHHHHHh
Confidence 456788888884332 6999999 9999999999997643 236999999864 667889999876321
Q ss_pred -CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
......+.++++.+++....+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~t 179 (200)
T PRK13540 101 FSPGAVGITELCRLFSLEHLID-YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179 (200)
T ss_pred cCcchHHHHHHHHHcCCchhhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCE
Confidence 112345778999999976555 478999999999999999999999999999999999999999999999864 569
Q ss_pred EEEEecChHHHHhhCCe
Q psy2681 146 VILVSHDERLIRETDCE 162 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~ 162 (211)
||++||+..++.. +|.
T Consensus 180 iii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 180 VLLTSHQDLPLNK-ADY 195 (200)
T ss_pred EEEEeCCchhccc-cch
Confidence 9999999999866 454
No 290
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=1.8e-29 Score=232.62 Aligned_cols=175 Identities=23% Similarity=0.316 Sum_probs=145.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +|. .|+.+|+....
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~~ 438 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH--LFS-ATLRDNLLLAA 438 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch--hhc-ccHHHHhhcCC
Confidence 466788999995443 5999999 9999999999998653 346999999975 554 68999986432
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc---------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT---------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
..+.+++.++++.+++.+...+ .....||||||||++||||++.+|+++||||||++||+.+...+.+.|
T Consensus 439 ~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l 518 (574)
T PRK11160 439 PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518 (574)
T ss_pred CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3467778888999988754332 134679999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+. ++|+|+|||+++.+.. +|++++|++|++++ .|+.+++.
T Consensus 519 ~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~-~g~~~~l~ 561 (574)
T PRK11160 519 AEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIE-QGTHQELL 561 (574)
T ss_pred HHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 876 5799999999999865 89999999999975 57776654
No 291
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=2.2e-29 Score=202.40 Aligned_cols=144 Identities=28% Similarity=0.288 Sum_probs=121.1
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcc--cCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGEL--TPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~--~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
+..|..+.++ |-+ ++|||++ |+|+. +|++|+|..+. +..++|++|++. +++.+|+.+++....
T Consensus 32 i~~Ge~~~l~-G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~i~~~~- 107 (194)
T cd03213 32 AKPGELTAIM-GPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDI--LHPTLTVRETLMFAA- 107 (194)
T ss_pred EcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCccc--CCCCCcHHHHHHHHH-
Confidence 4566777888 554 6999999 99999 99999997642 346999999864 677889988774210
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
. ..+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|
T Consensus 108 -----------~-----------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 165 (194)
T cd03213 108 -----------K-----------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165 (194)
T ss_pred -----------H-----------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 0189999999999999999999999999999999999999999999875 46999
Q ss_pred EEecChH-HHHhhCCeEEEEeCCceee
Q psy2681 148 LVSHDER-LIRETDCELWALEKKNIRK 173 (211)
Q Consensus 148 ivsHd~~-~~~~~~~~v~~l~~g~i~~ 173 (211)
++|||++ .+..+||++++|++|+++.
T Consensus 166 i~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 166 CSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred EEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 9999996 7888999999999999853
No 292
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=2.1e-29 Score=237.22 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=142.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|.++.+++.-. ++|||++ ++|++.|++|+|..++ +..+||++|++. +| +.|+.+|+...
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~l~~ 572 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPY--IF-SGSILENLLLGA 572 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCce--eh-hHHHHHHHhccC
Confidence 467789999995553 6999999 9999999999998754 457999999985 55 45999999754
Q ss_pred -cCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...+.+++.++++..++.+ .... ....||||||||++||||++++|+++||||||++||+.+...+.
T Consensus 573 ~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~ 651 (708)
T TIGR01193 573 KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651 (708)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHH
Confidence 2345667777777666532 2222 34679999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY-QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~-~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|.+. +.|+|+|||+++.+. .+|++++|++|+++. .|+.+++.
T Consensus 652 ~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~-~G~~~~L~ 696 (708)
T TIGR01193 652 NNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE-QGSHDELL 696 (708)
T ss_pred HHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 999876 579999999999885 589999999999975 68877654
No 293
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.1e-29 Score=202.78 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=124.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCccc---CCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELT---PNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~---p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+++..|..+.+++.-. ++|||++ ++|+++ |++|+|..+. +..++|++|++. +++.+|+.+++.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~ 105 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDV--HFPTLTVRETLD 105 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccc--cCCCCcHHHHHh
Confidence 4677888899994443 5999999 999999 8999987532 346999999864 677889999875
Q ss_pred hhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 67 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 67 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
.... . . .+ +++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 106 ~~~~-----~----~-------~~-~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 168 (202)
T cd03233 106 FALR-----C----K-------GN-EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168 (202)
T ss_pred hhhh-----h----c-------cc-cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 3211 0 0 23 367899999999999999999999999999999999999999999999865
Q ss_pred CCeEEEE-ecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 QGGVILV-SHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ~~tiiiv-sHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|+|++ +|+.+.+.+.||++++|++|+++.
T Consensus 169 ~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 169 KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 3465555 556788889999999999999863
No 294
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=224.94 Aligned_cols=167 Identities=22% Similarity=0.254 Sum_probs=142.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|+.+++++... ++|||+| |+|.++|++|+|..++ ...|+.++|+.. +.|++||.||+....
T Consensus 31 v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~--L~p~LsVaeNifLgr 108 (500)
T COG1129 31 VRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS--LVPNLSVAENIFLGR 108 (500)
T ss_pred EeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh--ccCCccHHHHhhccc
Confidence 45688899994443 5999999 9999999999998653 236999999976 899999999985211
Q ss_pred ------C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 ------N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ------~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+ .+ ...+.++|+.+|+....+ .++.+||.||||.|+||||+..+++++||||||++|+....+.++++
T Consensus 109 e~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~-~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ 187 (500)
T COG1129 109 EPTRRFGLIDRKAMRRRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL 187 (500)
T ss_pred ccccCCCccCHHHHHHHHHHHHHHcCCCCChh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1 12 234677899999864444 48999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++ |.+||+|||.++++.++|||+.||.+|+.+.
T Consensus 188 ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 188 IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9876 5699999999999999999999999999864
No 295
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=2.7e-29 Score=202.78 Aligned_cols=148 Identities=27% Similarity=0.342 Sum_probs=121.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCc--ccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGE--LTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~--~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+++..|..+.+++.-. ++|||++ |+|. .+|++|+|..+. +..++|++|++. +++..++.+++
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~~~~~~l 98 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP--EIPGVKNADFL 98 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh--hccCccHHHHH
Confidence 4567788888884443 5999999 9999 479999997542 224999999864 56666665543
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 66 MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
++...+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.++
T Consensus 99 -------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~ 153 (200)
T cd03217 99 -------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153 (200)
T ss_pred -------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 1133689999999999999999999999999999999999999999999875
Q ss_pred CCeEEEEecChHHHHh-hCCeEEEEeCCceeeecCC
Q psy2681 143 QGGVILVSHDERLIRE-TDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~-~~~~v~~l~~g~i~~~~g~ 177 (211)
+.|||++||+++.+.+ ++|++++|++|++.. .+.
T Consensus 154 ~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~-~~~ 188 (200)
T cd03217 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK-SGD 188 (200)
T ss_pred CCEEEEEecCHHHHHHhhCCEEEEEECCEEEE-Ecc
Confidence 5699999999999988 799999999999865 453
No 296
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-29 Score=199.08 Aligned_cols=133 Identities=30% Similarity=0.400 Sum_probs=113.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+.+|++|++..+. +..++|++|++. +++ .++.+++
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~--~~~-~t~~e~l---- 96 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF--LFS-GTIRENI---- 96 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch--hcc-chHHHHh----
Confidence 456788888884443 5999999 9999999999997643 235899999864 444 4776654
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVI 147 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tii 147 (211)
||+||||||+||||++.+|+++||||||+|||+.++..+.++|+++ +.|||
T Consensus 97 ---------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii 149 (171)
T cd03228 97 ---------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVI 149 (171)
T ss_pred ---------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999876 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCc
Q psy2681 148 LVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
++|||++++.. ||++++|++|+
T Consensus 150 ~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 150 VIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999987 99999998874
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=3.9e-29 Score=229.04 Aligned_cols=175 Identities=27% Similarity=0.369 Sum_probs=139.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|.++|++|+|..++ +..++|++|++. +++ .|+.+|+...
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~ 415 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE--LFP-GTVAENIARF 415 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc--ccc-ccHHHHHhcc
Confidence 4567889999995554 5999999 9999999999997653 347999999975 555 4899998633
Q ss_pred c-CCCHHHHHHHHH---------hC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLG---------MF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~---------~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.+.++ .+ |++..... ....||||||||++||||++.+|+++||||||++||+.+...+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~ 494 (544)
T TIGR01842 416 GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494 (544)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHH
Confidence 2 234444444444 33 44443333 56789999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|.+. +.|+|++||+.+.+ +.||++++|++|+++. .|+.+++.
T Consensus 495 ~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~-~g~~~~l~ 541 (544)
T TIGR01842 495 NAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIAR-FGERDEVL 541 (544)
T ss_pred HHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEe-eCCHHHHh
Confidence 999875 47999999999976 4689999999999975 67766553
No 298
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=3.9e-29 Score=230.92 Aligned_cols=176 Identities=22% Similarity=0.323 Sum_probs=141.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +| +.|+.+|+...
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~~Ni~~~ 432 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG--LF-NRSIEDNIRVG 432 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc--cc-cccHHHHHhcC
Confidence 3567789999995543 6999999 9999999999998653 457999999985 55 46899998744
Q ss_pred c-CCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~-------~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. +.+++++.++++.+++.+.. +. .....||||||||++||||++++|+++||||||++||+.+...+.+
T Consensus 433 ~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~ 512 (588)
T PRK13657 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKA 512 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 2 34566666666666653211 11 1235699999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|.+. ++|+|+|||+.+.+. .+|++++|++|+++. .|+.+++.
T Consensus 513 ~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~-~g~~~~l~ 557 (588)
T PRK13657 513 ALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVE-SGSFDELV 557 (588)
T ss_pred HHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEE-eCCHHHHH
Confidence 99876 579999999998875 589999999999975 57766553
No 299
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.96 E-value=2.5e-29 Score=236.77 Aligned_cols=176 Identities=21% Similarity=0.246 Sum_probs=140.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
++..|.++.+++.-. ++|||++ +.|+++|++|+|..++ +.+++|++|++. +| +.|+.+|+...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lF-~gTIreNI~~g~ 579 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV--LF-SGSVRENIAYGL 579 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc--cc-ccCHHHHHhcCC
Confidence 466889999994443 6999999 9999999999998654 457999999985 44 57999999743
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.+.+++++.++++..++.+...+ .....||||||||++||||++++|+++||||||++||+++...+.+.
T Consensus 580 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~ 659 (711)
T TIGR00958 580 TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES 659 (711)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh
Confidence 23456677777777766432211 12357999999999999999999999999999999999999999983
Q ss_pred HHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
....++|+|+|||+++.+. .+|+|++|++|++++ .|+.+++.+
T Consensus 660 ~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive-~Gt~~eL~~ 702 (711)
T TIGR00958 660 RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVE-MGTHKQLME 702 (711)
T ss_pred hccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEE-eeCHHHHHh
Confidence 3233579999999999886 479999999999975 688776543
No 300
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=6e-29 Score=229.66 Aligned_cols=176 Identities=21% Similarity=0.281 Sum_probs=139.8
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++.-. ++|||++ ++|.++|++|+|..++ +..++|++|++. ++ ..|+.+|+...
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~ 432 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG--LF-NRSIRENIRLG 432 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc--cC-cccHHHHHhcC
Confidence 4577889999994333 6999999 9999999999997643 347999999975 55 46899998643
Q ss_pred c-CCCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.+.++..+ ++..... ....||||||||++|||||+.+|+++||||||++||+.+.+.+.
T Consensus 433 ~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~ 511 (585)
T TIGR01192 433 REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511 (585)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 2 234455544444433 3333333 46789999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. +.|+|+|||+++.+. .+|++++|++|+++. .|+.+++.+
T Consensus 512 ~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 558 (585)
T TIGR01192 512 NAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIE-KGSFQELIQ 558 (585)
T ss_pred HHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEE-ECCHHHHHH
Confidence 999876 579999999999995 589999999999975 677766643
No 301
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=4.1e-29 Score=230.04 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=141.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +|. .|+.+|+...
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~ 412 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF--LFS-DTVANNIALG 412 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe--ecc-ccHHHHHhcC
Confidence 4567888999995554 5999999 9999999999998653 356999999975 554 5999998643
Q ss_pred -cCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...+.+++.++++..++.+ .... ....||||||||++||||++.+|+++||||||++||+.+...+.
T Consensus 413 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~ 491 (569)
T PRK10789 413 RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL 491 (569)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHH
Confidence 2345566666666666542 2222 34679999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+++ +.|+|++||+++.+. .+|++++|++|+++. .|+.+++.
T Consensus 492 ~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 537 (569)
T PRK10789 492 HNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQ-RGNHDQLA 537 (569)
T ss_pred HHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEE-ecCHHHHH
Confidence 999875 579999999998886 589999999999975 67776654
No 302
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.3e-29 Score=201.05 Aligned_cols=146 Identities=22% Similarity=0.193 Sum_probs=120.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
++..|..+.+++.-. ++|||++ |+|.. +|++|++..+. +..++|++|++. +++..|+.+++....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~-- 104 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDV--HSPNLTVREALRFSA-- 104 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCc--cccCCcHHHHHHHHH--
Confidence 355677888884443 5999999 99986 48999998653 346999999864 677889999875210
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
.+ .+|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|||+
T Consensus 105 -------~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 105 -------LL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred -------HH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 00 089999999999999999999999999999999999999999999865 579999
Q ss_pred EecChH-HHHhhCCeEEEEeC-Cceee
Q psy2681 149 VSHDER-LIRETDCELWALEK-KNIRK 173 (211)
Q Consensus 149 vsHd~~-~~~~~~~~v~~l~~-g~i~~ 173 (211)
+||+++ .+...||++++|++ |+++.
T Consensus 164 vtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 164 TIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred EEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 999998 47888999999998 88763
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=3e-29 Score=235.67 Aligned_cols=176 Identities=24% Similarity=0.317 Sum_probs=143.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. ++ +.|+.+|+...
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~--lf-~~ti~eNi~~~ 554 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV--LF-SRSIRDNIALC 554 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe--eh-hhhHHHHHhcC
Confidence 4678899999995553 6999999 9999999999998653 356999999975 44 46899998643
Q ss_pred c-CCCHHHHHHHHHhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.++++..++. ..... ....||||||||++||||++.+|+++||||||++||+.+...+.
T Consensus 555 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~ 633 (694)
T TIGR01846 555 NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHH
Confidence 2 34556666666665543 22222 35689999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. +.|+|++||+++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 634 ~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~-~g~~~~l~~ 680 (694)
T TIGR01846 634 RNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE-SGRHEELLA 680 (694)
T ss_pred HHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEE-eCCHHHHHH
Confidence 999876 5799999999999865 89999999999975 677776543
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=5.4e-29 Score=191.34 Aligned_cols=121 Identities=44% Similarity=0.699 Sum_probs=111.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|....+++.-. ++|||++ ++|+.+|++|+|..+....++|++|
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------------------------------- 70 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------------------------------- 70 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------------------------------
Confidence 456778888884443 5999999 9999999999999887778899887
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 160 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 160 (211)
||+||+||++||||++.+|+++||||||++||+.++..+.+.+++++.|+|++||+.+++..+|
T Consensus 71 ----------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~ 134 (144)
T cd03221 71 ----------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVA 134 (144)
T ss_pred ----------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CeEEEEeCCc
Q psy2681 161 CELWALEKKN 170 (211)
Q Consensus 161 ~~v~~l~~g~ 170 (211)
+++++|++|+
T Consensus 135 d~v~~l~~g~ 144 (144)
T cd03221 135 TKIIELEDGK 144 (144)
T ss_pred CEEEEEeCCC
Confidence 9999999885
No 305
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=5.4e-29 Score=232.58 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=137.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc--------CC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--------NL 71 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--------~~ 71 (211)
+.+..|..+.+++.-. ++|||++ ++|+.+|++|++....+.+++|++|++. +++. |+.+++.... +.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~ 549 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY--MTLG-TLRDQIIYPDSSEDMKRRGL 549 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC--CCCc-CHHHHHhcCCChhhhhccCC
Confidence 3567888999994443 5999999 9999999999998877778999999975 5555 9999986321 22
Q ss_pred CHHHHHHHHHhCCCCCccccCC---------CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIP---------IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~---------~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
..+++.++++.+++.+..++ + ..+||||||||++||||++++|+++||||||++||+.+...+.+.+++.
T Consensus 550 ~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~ 628 (659)
T TIGR00954 550 SDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF 628 (659)
T ss_pred CHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 45667788999999765443 3 3689999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 143 QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.|+|+|||+++.+ +.||++++|+.+
T Consensus 629 ~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 629 GITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred CCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 88999999999987 578999999643
No 306
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=6.1e-29 Score=231.76 Aligned_cols=177 Identities=24% Similarity=0.277 Sum_probs=143.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC--cceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN--KGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~--~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.+++.-. ++|||++ |+|..+|+ +|+|..++ ++++||++|++. +++.+|+.|++....
T Consensus 90 ~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~a~~ 167 (659)
T PLN03211 90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI--LYPHLTVRETLVFCSLL 167 (659)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccc--cCCcCCHHHHHHHHHHh
Confidence 456778888884443 5999999 99999885 89998654 246999999864 788899999875321
Q ss_pred ----CCCH----HHHHHHHHhCCCCCccc----cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 ----NLPY----EKSRRQLGMFGLPSYAH----TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ----~~~~----~~~~~~l~~~gl~~~~~----~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.... +.++++++.+||.+..+ ++.++.|||||||||+||++|+.+|+++||||||+|||+.++..+.+
T Consensus 168 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~ 247 (659)
T PLN03211 168 RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247 (659)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHH
Confidence 1122 23567899999976543 23567899999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChH-HHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~-~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++||+++ .+.+.+|++++|++|+++ +.|+.++..
T Consensus 248 ~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~ 295 (659)
T PLN03211 248 TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAM 295 (659)
T ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHH
Confidence 99865 579999999998 588899999999999986 467765543
No 307
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.6e-29 Score=201.16 Aligned_cols=153 Identities=24% Similarity=0.206 Sum_probs=126.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC--C
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--~ 71 (211)
.+..|.++.+++.-. ++|||++ ++|+.+|++|+|..++ ...++|++|++. +++..|+.+++..... .
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG--LKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC--CCccCCHHHHHHHHHHhcc
Confidence 456788889994443 5999999 9999999999998654 234899998764 5677899998854221 1
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN---YQGGVIL 148 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~---~~~tiii 148 (211)
....+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++ .+.|+|+
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 178 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDE-KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLL 178 (195)
T ss_pred cHHHHHHHHHHcCCHhhhcc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 23456778899999876654 7899999999999999999999999999999999999999999999864 3579999
Q ss_pred EecChHHHHh
Q psy2681 149 VSHDERLIRE 158 (211)
Q Consensus 149 vsHd~~~~~~ 158 (211)
+||+.+.+..
T Consensus 179 ~sh~~~~i~~ 188 (195)
T PRK13541 179 SSHLESSIKS 188 (195)
T ss_pred EeCCccccch
Confidence 9999998875
No 308
>KOG0927|consensus
Probab=99.96 E-value=1.5e-29 Score=223.93 Aligned_cols=186 Identities=39% Similarity=0.671 Sum_probs=163.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC--CCHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQ 79 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--~~~~~~~~~ 79 (211)
+.++.|+++++=.. +.|||+| ++|.+.|..|.++.....+++++.|+....+.-+.+..++....+. ...+.++.+
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~i 492 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI 492 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHH
Confidence 45778999994333 4899999 9999999999999877777888888766556667788888876554 455678899
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 159 (211)
+.+|||.......++++||+|||.||.+|+.++.+|.+|+|||||||||.++...+.+.|+++.++||+||||..++..+
T Consensus 493 lgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 493 LGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV 572 (614)
T ss_pred HHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHH
Confidence 99999997766779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 160 DCELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 160 ~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
++++|+..++.+..|+|++..|.....++.
T Consensus 573 aeEi~~c~~~~~~~~~G~i~~yk~~l~~~~ 602 (614)
T KOG0927|consen 573 AEEIWVCENGTVTKWDGDIEIYKEHLKKKR 602 (614)
T ss_pred HHHhHhhccCceeecCccHHHHHHHHHHHH
Confidence 999999999999999999999887665554
No 309
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.96 E-value=7.5e-29 Score=228.34 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=141.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|+||++. ..+.|+.+|+...
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~---lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV---LFAASVMENIRYG 437 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc---cccccHHHHHhcC
Confidence 4577899999995553 6999999 9999999999998653 346999999975 3456899998643
Q ss_pred c-CCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.++++.+|+.+ .... ....||||||||++||||++.+|+++||||||++||+.+.+.+.
T Consensus 438 ~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~ 516 (576)
T TIGR02204 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516 (576)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHH
Confidence 2 234566777777766542 1112 34579999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|++. +.|+|+|||+.+.+. .+|+++++++|+++. .|+.+++.
T Consensus 517 ~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~-~g~~~~l~ 562 (576)
T TIGR02204 517 QALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVA-QGTHAELI 562 (576)
T ss_pred HHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEe-eecHHHHH
Confidence 999876 579999999998875 589999999999975 57766543
No 310
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=1.3e-28 Score=226.61 Aligned_cols=173 Identities=27% Similarity=0.345 Sum_probs=140.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|.++.++ |-. ++||+++ +.|++.|++|+|..++ +.+++|++|++. +|. .|+.+|+....
T Consensus 352 i~~Ge~vaiV-G~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~--LF~-~TI~~NI~~g~ 427 (567)
T COG1132 352 IEPGEKVAIV-GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL--LFS-GTIRENIALGR 427 (567)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce--eec-ccHHHHHhcCC
Confidence 5678899988 554 5999999 9999999999998743 567999999975 665 78999997543
Q ss_pred C-CCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 N-LPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ~-~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .+++++.++++..+ ++..... ....||||||||++||||++.+|++++||||||+||+.+...+.+
T Consensus 428 ~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 2 45566665555543 3333322 345799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+.+. ++|+|+|+|.+..+.. +|+|++|++|++++ .|+.+++..
T Consensus 507 ~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e-~G~h~eLl~ 552 (567)
T COG1132 507 ALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE-RGTHEELLA 552 (567)
T ss_pred HHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEE-ecCHHHHHH
Confidence 99754 4599999999999987 89999999999875 688877654
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=196.05 Aligned_cols=163 Identities=26% Similarity=0.315 Sum_probs=139.6
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--- 69 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--- 69 (211)
.|++|.+++=-. ++|||+| ++-++.|++|++.+.+ +.+|+|+.|.|. +|++ ||.+|+...+
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa--Lfg~-tVeDNlifP~~~r 104 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA--LFGD-TVEDNLIFPWQIR 104 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc--cccc-chhhccccchHHh
Confidence 577888883333 5999999 9999999999997643 557999999986 6664 7788875433
Q ss_pred --CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C
Q psy2681 70 --NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q 143 (211)
Q Consensus 70 --~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~ 143 (211)
..++..+..++++|++.+....+++.+||||||||++|+|.|..-|++|+|||||++||+.+++.+.++|.++ .
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 3356678889999999887767789999999999999999999999999999999999999999999999876 4
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.+++.||||.+.+.+.++++|-+..|.+
T Consensus 185 vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 185 VAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEEEEecChHHHhhhhheEEEeccCcc
Confidence 6999999999999999999999988865
No 312
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-29 Score=222.53 Aligned_cols=175 Identities=22% Similarity=0.299 Sum_probs=145.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-c
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~ 69 (211)
+..|+++++++.=. ++|||++ +.|...|++|+|..++ +..+++++|.+. +| .-|+.+|+... .
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h--lF-~~Tlr~NL~lA~~ 437 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVH--LF-SGTLRDNLRLANP 437 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchH--HH-HHHHHHHHhhcCC
Confidence 56789999994443 5999999 9999999999998654 336899999864 44 45888888643 3
Q ss_pred CCCHHHHHHHHHhCCCCCccccC----------CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
+.+++++.++++++||++..... --..||||||||++|||+|+++.+++||||||.|||+.+.+++++.+
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll 517 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH
Confidence 45678888999999987544332 23579999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+. ++|+|+|||++..++. +|+|++|++|++++ .|++.++..
T Consensus 518 ~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 518 FEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred HHHhcCCeEEEEecccccHhh-cCEEEEEECCeeee-cCCHHhhhc
Confidence 765 6799999999999975 59999999999975 788877654
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.8e-28 Score=192.06 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=105.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+.. .+ . ..+..+.. -
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~-~~-----------~-~~~~~~~~--------------~ 74 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK-EV-----------S-FASPRDAR--------------R 74 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-EC-----------C-cCCHHHHH--------------h
Confidence 456778888884443 6999999 99999999999976531 00 0 00110000 0
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIR 157 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 157 (211)
..++ .+.+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|++|||++++.
T Consensus 75 ~~i~--------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 75 AGIA--------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCeE--------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 0011 11239999999999999999999999999999999999999999999876 569999999999999
Q ss_pred hhCCeEEEEeCCcee
Q psy2681 158 ETDCELWALEKKNIR 172 (211)
Q Consensus 158 ~~~~~v~~l~~g~i~ 172 (211)
++|+++++|++|+++
T Consensus 147 ~~~d~~~~l~~g~i~ 161 (163)
T cd03216 147 EIADRVTVLRDGRVV 161 (163)
T ss_pred HhCCEEEEEECCEEE
Confidence 999999999999875
No 314
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=195.77 Aligned_cols=181 Identities=26% Similarity=0.303 Sum_probs=145.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F 69 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~ 69 (211)
|+...+| |=+ ++|||+| ++|.+.|++|++..+. .++-+.+||+.. +.+..++.|.+... +
T Consensus 27 Gev~ail-GPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 27 GEVLAIL-GPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS--LAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred CcEEEEE-CCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc--cccceEHHHHHHhccccc
Confidence 5566677 555 5999999 9999999999998653 235688999865 55667888877521 1
Q ss_pred --CCC--HHH--HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 --NLP--YEK--SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 --~~~--~~~--~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.. +.. +..+|...++..+..+ ...+|||||||||.+||.|++ ++++|+||||||+||+..+..+++
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R-~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~ 182 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGR-DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR 182 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhcc-chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHH
Confidence 111 222 5678999999887765 678999999999999999974 445899999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH-HHHHHHHHhhhh
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLTSLGEA 192 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~-~~~~~~~~~~~~ 192 (211)
+.+++ +..|+.|-||++.+..+|||+++|.+|+++. .|++.+ +..+.++..|..
T Consensus 183 laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~vlt~Etl~~vyg~ 240 (259)
T COG4559 183 LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDVLTDETLERVYGA 240 (259)
T ss_pred HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHhcCHHHHHHHhCC
Confidence 99877 5699999999999999999999999999975 677655 556777777654
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=3.2e-28 Score=203.55 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=126.8
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEE-----------ecC-------------CeEEEEEeCCCCCCCCC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELR-----------KSP-------------RLRIGKFDQHSGEHLFP 57 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~~~l~~ 57 (211)
+..|..+.+++.-. ++|||++ ++|+++|++|+|+ ... ...++|++|... +++
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 100 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVD--LIP 100 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhc--cCc
Confidence 35677888884333 5999999 9999999999995 111 113678888754 344
Q ss_pred CCCHHHHHHhhcC--CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 58 DDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 58 ~~t~~e~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.++.+++..... .....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||++||+.++..+
T Consensus 101 -~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l 178 (255)
T cd03236 101 -KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR-NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178 (255)
T ss_pred -hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence 344444432211 113456789999999876654 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
.+.|+++ +.|||++|||++++..+||++++|++
T Consensus 179 ~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 179 ARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 9998765 57999999999999999999999954
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=2.7e-28 Score=244.16 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=144.8
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|+++|++|+|..++ +.+++|+||+|. +|. -|+.+|+..
T Consensus 1257 l~I~~GekvaIV-G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~--LF~-gTIr~NL~~ 1332 (1495)
T PLN03232 1257 FFVSPSEKVGVV-GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV--LFS-GTVRFNIDP 1332 (1495)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe--eeC-ccHHHHcCC
Confidence 457789999999 553 5999999 9999999999998653 567999999985 565 599999864
Q ss_pred hcCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++..++.+...+ .....||||||||++|||||+++|++||||||||+||+++...+.+
T Consensus 1333 ~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~ 1412 (1495)
T PLN03232 1333 FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR 1412 (1495)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 334566777777777766432211 1335799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|+|+|+|.++.+.. ||+|++|++|++++ .|+++++.
T Consensus 1413 ~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl 1457 (1495)
T PLN03232 1413 TIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELL 1457 (1495)
T ss_pred HHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 99875 5799999999999976 79999999999987 47776654
No 317
>KOG0062|consensus
Probab=99.96 E-value=1.8e-28 Score=216.03 Aligned_cols=184 Identities=42% Similarity=0.655 Sum_probs=156.5
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-cCCCHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQL 80 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~l 80 (211)
+.-.||+++ |=+ ..||++| +.|...|..|.+...++.+++|++|..-..+....+..++.... .+..++.++..+
T Consensus 388 e~~sRi~~v-g~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl 466 (582)
T KOG0062|consen 388 ESDSRISRV-GENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHL 466 (582)
T ss_pred chhhhhhee-ccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHH
Confidence 344577777 443 5899999 89999999999999999999999998653333333445555443 356788899999
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 160 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 160 (211)
..||++......++..||||||-||+||.+...+|.+|+||||||+||.++...+...|+.+++.||+||||.+++..+|
T Consensus 467 ~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c 546 (582)
T KOG0062|consen 467 GSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLC 546 (582)
T ss_pred HhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcC
Confidence 99999876655578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 161 CELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 161 ~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
..+|+.++|++..+.|...++++.....+
T Consensus 547 ~E~Wvve~g~vt~ieg~~~~yKkl~~~e~ 575 (582)
T KOG0062|consen 547 KELWVVEDGKVTPIEGGIDKYKKLLGAEL 575 (582)
T ss_pred ceeEEEcCCcEEeeeccHHHHHHHHHHHH
Confidence 99999999999999999988877554444
No 318
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=214.71 Aligned_cols=166 Identities=25% Similarity=0.353 Sum_probs=143.6
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+..|+-+.++ |=+ ++|||.+ +.|.++|++|+|.+++ +..||+|+|++. +++.+||.||+...
T Consensus 27 v~~GeIHaLL-GENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~--Lv~~lTV~ENiiLg 103 (501)
T COG3845 27 VKKGEIHALL-GENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM--LVPTLTVAENIILG 103 (501)
T ss_pred ecCCcEEEEe-ccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc--cccccchhhhhhhc
Confidence 4567788888 554 5999999 9999999999998654 346999999976 89999999998632
Q ss_pred cC------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FN------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+ .+++.++.+++||+-..+. ++.+||-|+||||.|.+||..+|++|||||||+-|-|...+.|++.
T Consensus 104 ~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~-~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~ 182 (501)
T COG3845 104 LEPSKGGLIDRRQARARIKELSERYGLPVDPDA-KVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI 182 (501)
T ss_pred CccccccccCHHHHHHHHHHHHHHhCCCCCccc-eeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 21 12 3456788999999876665 8999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++ |+|||+|||-+.++.++|||+.+|..|+++.
T Consensus 183 l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 183 LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 8866 6799999999999999999999999999753
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2.9e-28 Score=224.73 Aligned_cols=161 Identities=25% Similarity=0.302 Sum_probs=130.1
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE-----------ecC-------------CeEEEEEeCCCC--CC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR-----------KSP-------------RLRIGKFDQHSG--EH 54 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~--~~ 54 (211)
+..|..+.++ |-+ ++|||+| |+|+++|++|+|. ..+ ..++++.+|... +.
T Consensus 96 i~~Gev~gLv-G~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 96 PKEGKVTGIL-GPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 3457788888 665 5999999 9999999999986 211 124566666532 11
Q ss_pred CCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 55 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 55 l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
++ ..|+.+++... .....+.++++.+|+....++ ++.+|||||||||+||+||+.+|+++||||||++||+.++.+
T Consensus 175 ~~-~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~-~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~ 250 (590)
T PRK13409 175 VF-KGKVRELLKKV--DERGKLDEVVERLGLENILDR-DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLN 250 (590)
T ss_pred hh-cchHHHHHHhh--hHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 22 23777777532 123467889999999876664 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 135 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 135 l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.++|+++ +.|||+||||++++..++|++++|.++
T Consensus 251 l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 251 VARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999877 789999999999999999999999764
No 320
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.3e-27 Score=224.27 Aligned_cols=109 Identities=26% Similarity=0.497 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
++.+++..+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++.|||+||||++
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45567888888643334578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 155 LIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++..+|+++++|++|++..+.|+++.+..
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999878898876543
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.96 E-value=3.9e-28 Score=221.63 Aligned_cols=161 Identities=28% Similarity=0.335 Sum_probs=131.8
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
|++..|.++.+++.-. ++|||++ ++|+++|++|+|..++ ++.++|++|++. +| +.|+.+|+...
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ti~~Ni~~~ 419 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF--LF-AGTIAENIRLA 419 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc--cc-CcCHHHHHhcc
Confidence 5677899999994443 5999999 9999999999997653 346999999985 55 46999998643
Q ss_pred c-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ..+++++.++++..++.+...+ .....||||||||++||||++.+|+++||||||++||+.+.+.+.+
T Consensus 420 ~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~ 499 (529)
T TIGR02857 420 RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499 (529)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2 3456677778887777542221 1346799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.+.+. +.|+|+|||+++.+. .||++++|
T Consensus 500 ~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 500 ALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99876 579999999999985 58998864
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1e-27 Score=190.15 Aligned_cols=125 Identities=25% Similarity=0.249 Sum_probs=109.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..+..+.+++.-. ++|||++ ++|+++|++|+|..+. ..++|++|++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~---------------------------- 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-ITPVYKPQYID---------------------------- 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-EEEEEEcccCC----------------------------
Confidence 456788899994443 5999999 9999999999998765 35888887531
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
||||||||++||||++.+|+++||||||++||+.++..+.+.+.++ +.|||++|||++++
T Consensus 72 ----------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 72 ----------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred ----------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999765 37999999999999
Q ss_pred HhhCCeEEEEeCCcee
Q psy2681 157 RETDCELWALEKKNIR 172 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~ 172 (211)
..+|+++++|+++..+
T Consensus 136 ~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 136 DYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHhCCEEEEEcCCCcc
Confidence 9999999999887553
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=4.1e-28 Score=222.49 Aligned_cols=171 Identities=17% Similarity=0.124 Sum_probs=134.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +|. .|+.++ .
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~n---~ 417 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH--LFD-QLLGPE---G 417 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh--HHH-Hhhccc---c
Confidence 4567888999994443 6999999 9999999999997643 357999999974 443 344444 1
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc--C--CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh---
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT--I--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--- 141 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~--~--~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~--- 141 (211)
...+.+.+.++++.+++...... . ....||||||||++||||++.+|+++||||||++||+.+...+.+.+.+
T Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~ 497 (547)
T PRK10522 418 KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ 497 (547)
T ss_pred CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 12335567788889888754321 0 1358999999999999999999999999999999999999999888753
Q ss_pred -cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 142 -YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 142 -~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
.+.|+|+|||+++.+. .+|++++|++|++++..++..
T Consensus 498 ~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 498 EMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred hCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 2679999999998765 689999999999987766543
No 324
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.95 E-value=7.9e-28 Score=224.40 Aligned_cols=166 Identities=21% Similarity=0.278 Sum_probs=138.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|+.+.+++.-. ++|||++ |+|+.+|++|++..+. +..++|++|++. +++..++.+++.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~ 108 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH--LLSHLTAAQNVE 108 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc--cCCCCCHHHHHH
Confidence 56788888884443 5999999 9999999999997542 236999999874 788889988875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.. .+++.++++.+|+.+..+. ++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll 187 (648)
T PRK10535 109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL 187 (648)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 31 1222 2346778999999876654 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+++ +.|+|++||+.+.+. .||++++|++|+++.
T Consensus 188 ~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 188 HQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVR 223 (648)
T ss_pred HHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEe
Confidence 765 569999999999886 699999999999865
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=5.8e-28 Score=242.51 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=143.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|++.|++|+|..++ |.+++++||+|. +|. -|+.+|+..
T Consensus 1260 ~~I~~GekVaIV-GrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~--LF~-GTIreNLd~ 1335 (1622)
T PLN03130 1260 FEISPSEKVGIV-GRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV--LFS-GTVRFNLDP 1335 (1622)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc--ccc-ccHHHHhCc
Confidence 456789999999 553 5999999 9999999999998653 567999999985 554 599999864
Q ss_pred hcCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++..++.+...+ .....||||||||++|||||+.+|++||||||||+||.++...+.+
T Consensus 1336 ~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~ 1415 (1622)
T PLN03130 1336 FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415 (1622)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 434566777777777666432211 1235799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|+|+|+|.++.+.. ||+|++|++|++++ .|+++++.
T Consensus 1416 ~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl 1460 (1622)
T PLN03130 1416 TIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLL 1460 (1622)
T ss_pred HHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHH
Confidence 99875 5799999999999976 69999999999986 46665543
No 326
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.8e-28 Score=201.69 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=122.8
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
..|.-+.+++-=. ++||+-| +.|+++|++|+|...+... ..++ .....+++.++|+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i-------------~~~~--------~~~~~~~v~elL~~ 95 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI-------------TKLS--------KEERRERVLELLEK 95 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-------------hhcc--------hhHHHHHHHHHHHH
Confidence 4566677773333 5999999 9999999999998764320 0111 01123568889999
Q ss_pred CCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHh
Q psy2681 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRE 158 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 158 (211)
+|+......+++++|||||+||++|||||+.+|+++++|||+|+||...+.++.+++.++ +.|.+++|||+..+..
T Consensus 96 Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 96 VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 999774445689999999999999999999999999999999999999999999999765 6799999999999999
Q ss_pred hCCeEEEEeCCceeee
Q psy2681 159 TDCELWALEKKNIRKF 174 (211)
Q Consensus 159 ~~~~v~~l~~g~i~~~ 174 (211)
+|||+.+|..|++++.
T Consensus 176 isdri~VMy~G~iVE~ 191 (268)
T COG4608 176 ISDRIAVMYLGKIVEI 191 (268)
T ss_pred hcccEEEEecCceeEe
Confidence 9999999999999874
No 327
>KOG0055|consensus
Probab=99.95 E-value=4.9e-28 Score=231.38 Aligned_cols=174 Identities=25% Similarity=0.272 Sum_probs=138.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+..|.-+.+++.=. ++||+++ +.+++.|++|+|..++ +.+||.|.|+|- ....|+.||+....
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv---lF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV---LFATTIRENIRYGKP 452 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh---hhcccHHHHHhcCCC
Confidence 34567788885554 5999999 9999999999998653 557999999984 55689999997443
Q ss_pred CCCHHHHHHHHHhCCC-----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+.+++.++.+..+. +..... +-.+||||||||++|||||+.+|++|||||||++||+++...+.+.
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence 3345555554443332 222222 2346999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|.|+|+|++..+.+ +|++++|++|++++ .|+.+++..
T Consensus 532 Ld~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi~ 576 (1228)
T KOG0055|consen 532 LDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELIA 576 (1228)
T ss_pred HHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHHh
Confidence 9876 6799999999999987 89999999999986 677776544
No 328
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.9e-28 Score=200.77 Aligned_cols=178 Identities=25% Similarity=0.392 Sum_probs=138.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCC----------eEEEEEeCCCCCCCCCCCCHHH---HHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPCE---YLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~t~~e---~~~ 66 (211)
++-.|.+...+ |-+ ++||++| ++|.+.|++|.|..++. +++++++-.. .++..++.+.+ ...
T Consensus 46 ~IP~G~ivgfl-GaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk-~ql~Wdlp~~ds~~v~~ 123 (325)
T COG4586 46 EIPKGEIVGFL-GANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK-LQLWWDLPALDSLEVLK 123 (325)
T ss_pred ecCCCcEEEEE-cCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhh-heeeeechhhhhHHHHH
Confidence 34567777777 665 5999999 99999999999987531 1344443221 12333333322 222
Q ss_pred hhcCCCHH----HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 67 KLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 67 ~~~~~~~~----~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
..+..+.. +...+.+.+++++.... ++..||-|||.|+.||.+|+++|++|+|||||-|||+.++..+.++++++
T Consensus 124 ~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~-~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 124 LIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred HHHhCCHHHHHHHHHHHHHHhcchhhhhh-hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 34455443 44567788899887775 89999999999999999999999999999999999999999999999876
Q ss_pred ----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 143 ----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 143 ----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.||+++||+++.+...|+||+.++.|+++ |+|+..++.+.
T Consensus 203 n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~ 247 (325)
T COG4586 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQ 247 (325)
T ss_pred HHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHH
Confidence 469999999999999999999999999996 78998876553
No 329
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.95 E-value=1.2e-27 Score=222.14 Aligned_cols=174 Identities=22% Similarity=0.236 Sum_probs=142.4
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCC---cceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPN---KGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+..|..+.+++.-. ++|||++ |+|..+|. +|+|..++ ++.+||++|++. +++.+|+.|++....
T Consensus 48 i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~--~~~~lTV~e~l~f~~~ 125 (617)
T TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL--FIPTLTVREHLMFQAH 125 (617)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccc--cCccCcHHHHHHHHHh
Confidence 45677788885554 5999999 99999885 79998654 236899999875 788999999886321
Q ss_pred -C----CC----HHHHHHHHHhCCCCCccccCCCC------CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 70 -N----LP----YEKSRRQLGMFGLPSYAHTIPIR------DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 70 -~----~~----~~~~~~~l~~~gl~~~~~~~~~~------~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
. .. ...+.++++.+|+.+..++ +++ .|||||||||+||++|+.+|++++|||||+|||+.+...
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t-~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~ 204 (617)
T TIGR00955 126 LRMPRRVTKKEKRERVDEVLQALGLRKCANT-RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204 (617)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCchhcCcC-ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHH
Confidence 1 11 2346789999999876665 554 599999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChH-HHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 135 LAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~-~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.+.|++. +.|||+++|++. .+.+.+|++++|++|+++ +.|+.++.
T Consensus 205 l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~ 254 (617)
T TIGR00955 205 VVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQA 254 (617)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHH
Confidence 99999875 579999999995 778899999999999986 46776654
No 330
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.3e-29 Score=196.82 Aligned_cols=182 Identities=18% Similarity=0.265 Sum_probs=149.0
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
..|-.-++| |=+ ++|||+. ++.++++++|+|+..+ .++++.+-|.+. +...+||.+.+.+.
T Consensus 25 ~~g~iTs~I-GPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~--i~~rlTV~dLv~FGRf 101 (252)
T COG4604 25 PKGGITSII-GPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENH--INSRLTVRDLVGFGRF 101 (252)
T ss_pred cCCceeEEE-CCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhch--hhheeEHHHHhhcCCC
Confidence 344445667 554 5999999 8999999999998653 235677778754 67788998887532
Q ss_pred -c--C-C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 -F--N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 -~--~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+ + . +...+.++++.++|++..++ +..+||||||||..||+.++++.+.++||||.|+||......+++.|++
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dr-yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDR-YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHH-hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHH
Confidence 1 1 1 23457889999999987775 8999999999999999999999999999999999999999888888864
Q ss_pred ----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhhh
Q psy2681 142 ----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLGE 191 (211)
Q Consensus 142 ----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~~ 191 (211)
+++||++|-||++++..++|.++.|++|+++. .|++++..+ +.++.++.
T Consensus 181 la~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~-~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK-QGSPDEIIQPEILSEIYD 234 (252)
T ss_pred HHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe-cCCHHHhcCHHHHHHHhc
Confidence 58999999999999999999999999999975 788877654 67777765
No 331
>KOG0057|consensus
Probab=99.95 E-value=7.5e-28 Score=213.62 Aligned_cols=174 Identities=22% Similarity=0.233 Sum_probs=144.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-c
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~ 69 (211)
+.+|.++++++.-. ++||++| +.+... .+|+|..++ |+.|||+||+.. + .+.|+..|+... .
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~--L-FndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV--L-FNDTILYNIKYGNP 450 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc--c-cchhHHHHhhcCCC
Confidence 56899999996665 5999999 999988 899998653 567999999864 4 456889998643 2
Q ss_pred CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
..+.+++.+..+++|+.+...+ .+-..|||||||||+||||++.+|+++++|||||+||.++...+.+.+
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i 530 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence 3457788888899888653322 134579999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+. ++|+|+|-|+++.+.. ||+|+++++|++.+ .|+.+++..
T Consensus 531 ~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e-~gth~ell~ 574 (591)
T KOG0057|consen 531 MDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKE-YGTHSELLA 574 (591)
T ss_pred HHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEE-eccHHHHhh
Confidence 874 5799999999999976 59999999999976 477766554
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=205.11 Aligned_cols=176 Identities=23% Similarity=0.296 Sum_probs=135.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC---------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t 60 (211)
|+.+|+.+++++-=. ++|-..+ +.|+++. -+|+|...+ ..+|+++||+|..+++|-.|
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 567888999984333 2343334 5555532 256665432 24799999999877888777
Q ss_pred HHHHHH----hhcCCC----HHHHHHHHHhCCCCCc--cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 61 PCEYLM----KLFNLP----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 61 ~~e~~~----~~~~~~----~~~~~~~l~~~gl~~~--~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+...+. ...+.+ +.++.++|+.+|+.+. ..+.++.+|||||||||.||+||+.+|++||.||||++||+.
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVt 191 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVT 191 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhh
Confidence 655443 222333 3456689999999752 223478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
.+.+++++|+++ +.++++||||+..+.+++|||+||.+|.+++ .|...
T Consensus 192 vQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~ 243 (534)
T COG4172 192 VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTE 243 (534)
T ss_pred hHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHH
Confidence 999999999865 6799999999999999999999999999986 44443
No 333
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=2.8e-27 Score=237.18 Aligned_cols=175 Identities=14% Similarity=0.190 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++.=. ++|||++ +.|+++|++|+|..++ +..++|+||+|. +|. -|+.+|+....
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~--LF~-gTIreNIdp~~ 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPV--LFD-GTVRQNVDPFL 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCc--ccc-ccHHHHhCccc
Confidence 467899999994443 5999999 9999999999998653 567999999985 555 59999996433
Q ss_pred CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN-PDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~-p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+++++.++++..++.+.... .....||||||||++|||||+++ |++||||||||+||+++...+.+.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4567788888888887643211 12357999999999999999995 899999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|++. +.|+|+|+|.++.+.. ||+|++|++|++++ .|+++++.
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE-~Gt~~eLl 1532 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAE-MGSPRELV 1532 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 9875 5799999999999865 69999999999986 57777664
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.95 E-value=1.6e-27 Score=219.00 Aligned_cols=166 Identities=19% Similarity=0.164 Sum_probs=131.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++.-. ++|||++ ++|.++|++|+|..++ +..++|++|++. +|. .|+.++. .
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~n~--~ 437 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH--LFD-DLIGPDE--G 437 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh--hhh-hhhhccc--c
Confidence 3567888999995553 5999999 9999999999997643 346999999874 444 3455553 1
Q ss_pred cCCCHHHHHHHHHhCCCCCccccC-----CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-H--
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-K-- 140 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~-- 140 (211)
.....+++.++++.+++.+..... ....||||||||++||||++.+|+++||||||++||+.+.+.+.+.+ +
T Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 438 EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 223456677889999987644321 23579999999999999999999999999999999999999997754 2
Q ss_pred -hcCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 141 -NYQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 141 -~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
..++|+|+|||+++.+ +.||++++|++|++++
T Consensus 518 ~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 518 KRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVK 550 (555)
T ss_pred HhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEE
Confidence 2368999999999876 4789999999999864
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=199.03 Aligned_cols=169 Identities=22% Similarity=0.384 Sum_probs=137.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec------------CCeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS------------PRLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~------------~~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
|+..|.+-.++ |.+ ++|||++ ++|...|++|.+... .+++||++.......+.+..++.+.+..
T Consensus 53 ~V~~ge~W~I~-G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlS 131 (257)
T COG1119 53 QVNPGEHWAIV-GPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLS 131 (257)
T ss_pred eecCCCcEEEE-CCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeee
Confidence 67788888888 776 5999999 999999999988642 1567899865433234455566665431
Q ss_pred -------hc--CCC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 68 -------LF--NLP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 68 -------~~--~~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.+ ..+ ..++..+++.+|+.+..++ +..+||-||||||.|||||+.+|++|||||||+|||..+++.+
T Consensus 132 g~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~l 210 (257)
T COG1119 132 GFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210 (257)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHcchhhhccC-chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 12 122 2356778999999987764 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 136 AEAIKNY-----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 136 ~~~l~~~-----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.+.|.+. +.++|+|||+.+++....++++.+.+|+++.
T Consensus 211 l~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999876 2489999999999999999999999999863
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=2.5e-27 Score=236.15 Aligned_cols=176 Identities=21% Similarity=0.246 Sum_probs=142.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-------------------------------------------------
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP------------------------------------------------- 31 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p------------------------------------------------- 31 (211)
.+..|..+.+++.=. ++|||++ |.|++.|
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 466788999994433 5999999 9999998
Q ss_pred -----CcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCHHHHHHHHHhCCCCCcc-----
Q psy2681 32 -----NKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA----- 89 (211)
Q Consensus 32 -----~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~l~~~gl~~~~----- 89 (211)
++|+|..++ +..||||+|+|. +| +.|+.||+.... ..+.+++.++++..++.+..
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--LF-~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--LF-NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 589997653 567999999985 54 679999997542 34567777777777664322
Q ss_pred --cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhC
Q psy2681 90 --HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETD 160 (211)
Q Consensus 90 --~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~ 160 (211)
+. .....||||||||++|||||+.+|++||||||||+||+++.+.+.+.|.+. +.|+|+|||.+..+. .|
T Consensus 1347 GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~a 1425 (1466)
T PTZ00265 1347 KYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK-RS 1425 (1466)
T ss_pred ccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH-hC
Confidence 11 134579999999999999999999999999999999999999999999875 569999999999986 47
Q ss_pred CeEEEEeC----CceeeecCChHHHH
Q psy2681 161 CELWALEK----KNIRKFNGDFDDYR 182 (211)
Q Consensus 161 ~~v~~l~~----g~i~~~~g~~~~~~ 182 (211)
|+|++|++ |+++...|+.+++.
T Consensus 1426 D~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1426 DKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999 88654468877764
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=6e-27 Score=234.80 Aligned_cols=176 Identities=20% Similarity=0.234 Sum_probs=144.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|++.|++|+|..++ |.+++++||+|. +|. -|+.+|+..
T Consensus 1307 ~~I~~GekiaIV-GrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~--LF~-gTIr~NLdp 1382 (1522)
T TIGR00957 1307 VTIHGGEKVGIV-GRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPV--LFS-GSLRMNLDP 1382 (1522)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCc--ccC-ccHHHHcCc
Confidence 356789999999 554 6999999 9999999999998653 567999999985 565 599999863
Q ss_pred hcCCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~-------~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++..++.+.. +. .....||||||||++||||++.+|++|||||||++||+++...+.+
T Consensus 1383 ~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~ 1462 (1522)
T TIGR00957 1383 FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS 1462 (1522)
T ss_pred ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 3345677777788777664321 11 1235699999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|++. +.|+|+|+|+++.+.. +|+|++|++|++++ .|+++++.+
T Consensus 1463 ~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1463 TIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred HHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99875 5699999999999976 59999999999987 577777654
No 338
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=3.3e-27 Score=215.54 Aligned_cols=149 Identities=30% Similarity=0.368 Sum_probs=122.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
+.+..|.++.+++.-. ++|||++ +.|+++|++|+|..++ +..++|++|++. +| +.|+.+|+...
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~--lF-~~TI~eNI~~g~ 432 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAH--LF-DTTVRDNLRLGR 432 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcc--cc-cccHHHHHhccC
Confidence 3567889999995443 6999999 9999999999998765 357999999985 44 56999998753
Q ss_pred cCCCHHHHHHHHHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
...+++++.++++..++.+... . ..-..||||||||++||||++.+|+++|||||||+||+++...+.+.
T Consensus 433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~ 512 (529)
T TIGR02868 433 PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLED 512 (529)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2346777888888887754222 1 12356999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecCh
Q psy2681 139 IKNY--QGGVILVSHDE 153 (211)
Q Consensus 139 l~~~--~~tiiivsHd~ 153 (211)
+.+. +.|+|+|||++
T Consensus 513 l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 513 LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEEecCC
Confidence 9876 57999999974
No 339
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.4e-27 Score=181.21 Aligned_cols=169 Identities=20% Similarity=0.272 Sum_probs=134.9
Q ss_pred cccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC--------------------CeEEEEEeCCCCCCCCCC----
Q psy2681 5 CLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP--------------------RLRIGKFDQHSGEHLFPD---- 58 (211)
Q Consensus 5 ~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~--------------------~~~ig~v~q~~~~~l~~~---- 58 (211)
--|+++.+++-- -++|||++ |+|-+.|+.|+|.... +...|++.|+|.+.+-..
T Consensus 30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 30 YPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred cCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence 357778888433 35999999 9999999999996421 346899999986443322
Q ss_pred CCHHHHHHh----hcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 59 DTPCEYLMK----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 59 ~t~~e~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
-++.|-++. .|+.-+..+..+++++.++...-...+..+||||+||++|||-|.+.|+++++||||.|||+..+..
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHH
Confidence 234444432 2344456677899999997533333678999999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++++. ++.++++||||+..+.-.++|.++|+.|++++
T Consensus 190 LLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9998865 46799999999999999999999999999875
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=7.1e-27 Score=232.91 Aligned_cols=162 Identities=23% Similarity=0.318 Sum_probs=131.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec-C-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS-P-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~-~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..+ . +..|||++|++. +|. .|+.+|+..
T Consensus 407 ~i~~Ge~vaIv-G~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~--LF~-~TI~eNI~~ 482 (1466)
T PTZ00265 407 TLTEGKTYAFV-GESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPL--LFS-NSIKNNIKY 482 (1466)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEeccccc--chh-ccHHHHHHh
Confidence 45678889999 554 5999999 999999999999873 1 346999999975 665 599999864
Q ss_pred hc----------------------------------------------------------CCCHHHHHHHHHhCCCCCcc
Q psy2681 68 LF----------------------------------------------------------NLPYEKSRRQLGMFGLPSYA 89 (211)
Q Consensus 68 ~~----------------------------------------------------------~~~~~~~~~~l~~~gl~~~~ 89 (211)
.. ....+++.++++.+++.+..
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i 562 (1466)
T PTZ00265 483 SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFV 562 (1466)
T ss_pred cCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHH
Confidence 21 01234566677777765431
Q ss_pred c----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHH
Q psy2681 90 H----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERL 155 (211)
Q Consensus 90 ~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 155 (211)
. ......||||||||++||||++.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++.
T Consensus 563 ~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 563 SALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred HhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 1 1256789999999999999999999999999999999999999999999876 4699999999999
Q ss_pred HHhhCCeEEEEeCC
Q psy2681 156 IRETDCELWALEKK 169 (211)
Q Consensus 156 ~~~~~~~v~~l~~g 169 (211)
+ +.||++++|++|
T Consensus 643 i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 643 I-RYANTIFVLSNR 655 (1466)
T ss_pred H-HhCCEEEEEeCC
Confidence 8 579999999886
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=1.6e-26 Score=231.20 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=143.0
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
|.+..|.++.++ |-. ++|||++ +.|++. .+|+|..++ +.+++|+||+|. +|. -|+.+|+.-
T Consensus 1240 ~~I~~GekvaIv-GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~--LF~-GTIR~NLdp 1314 (1490)
T TIGR01271 1240 FSVEGGQRVGLL-GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF--IFS-GTFRKNLDP 1314 (1490)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc--cCc-cCHHHHhCc
Confidence 467889999999 553 6999999 999986 799997653 567999999985 555 599999954
Q ss_pred hcCCCHHHHHHHHHhCCCCCccccC------C----CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHTI------P----IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~~------~----~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++.+++.+...+. . -..||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 1315 ~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~ 1394 (1490)
T TIGR01271 1315 YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394 (1490)
T ss_pred ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3344677888888888875432211 1 23699999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|||+|||.++.+.. +|+|++|++|+++++ |++.++.
T Consensus 1395 ~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271 1395 TLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred HHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHH
Confidence 99875 5699999999999876 799999999999874 6666554
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=1.3e-26 Score=230.58 Aligned_cols=171 Identities=19% Similarity=0.247 Sum_probs=137.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc---CCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT---PNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~---p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
+..|..+.+++.-. ++|||++ |+|..+ |++|+|..++ ++.+||++|++. +++.+|+.|++...
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~--~~~~~Tv~E~L~~~a~l 863 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL--HLPTSTVRESLRFSAYL 863 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeeccccc--CCCCCCHHHHHHHHHHh
Confidence 45667788884333 5999999 999987 7889998654 346899999864 67889999988632
Q ss_pred c---CCCH----HHHHHHHHhCCCCCccccCCCC----CCChHHHHHHHHHHHHhcCCC-eEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F---NLPY----EKSRRQLGMFGLPSYAHTIPIR----DLSGGQKARVALAELTLNNPD-ILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~---~~~~----~~~~~~l~~~gl~~~~~~~~~~----~LSgG~kqRv~iaral~~~p~-lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+. +.++++++.+|+.+..++ .++ .|||||||||+||++|+.+|+ +|||||||+|||+.+...+.
T Consensus 864 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 864 RQPKSVSKSEKMEYVEEVIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhCCC-eeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 1 1122 346789999999877664 565 799999999999999999997 99999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHH-HHhhCCeEEEEeCC-ceeeecCCh
Q psy2681 137 EAIKNY---QGGVILVSHDERL-IRETDCELWALEKK-NIRKFNGDF 178 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~-~~~~~~~v~~l~~g-~i~~~~g~~ 178 (211)
+.|+++ +.|||++||+++. +.+.+|++++|.+| +++ +.|+.
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 999875 5699999999986 45678999999998 765 44554
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=8.1e-26 Score=184.09 Aligned_cols=179 Identities=22% Similarity=0.311 Sum_probs=147.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHH---hhcCCCH----
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPY---- 73 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~---~~~~~~~---- 73 (211)
+..|.++.+| |.+ ++|||+| |+|.++|++|+|..++ +++++..-. ..+.+++|..+|+. ...+...
T Consensus 50 i~~Ge~vGii-G~NGaGKSTLlkliaGi~~Pt~G~v~v~G--~v~~li~lg-~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 50 IYKGERVGII-GHNGAGKSTLLKLIAGIYKPTSGKVKVTG--KVAPLIELG-AGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred EeCCCEEEEE-CCCCCcHHHHHHHHhCccCCCCceEEEcc--eEehhhhcc-cCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 5678999999 776 5999999 9999999999998865 455444332 34678899999875 2345544
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
+.++++.+.-+|.++.+. |++.||.||+-|++++.|...+|++||+||-.+--|+.-++.-.+.+.++ +.|||+||
T Consensus 126 ~~~~eIieFaELG~fi~~-PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VS 204 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQ-PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS 204 (249)
T ss_pred HHHHHHHHHHHHHHHhhC-chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 345678888888888875 99999999999999999999999999999999999999888877777665 57999999
Q ss_pred cChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHH
Q psy2681 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTS 188 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~ 188 (211)
||+..+.++||++++|++|++. +.|+.++..+.+.+.
T Consensus 205 Hd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 205 HDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAYEED 241 (249)
T ss_pred CCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHHHHh
Confidence 9999999999999999999996 468887765544333
No 344
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=4.2e-26 Score=228.24 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=132.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ .++|++|++. +++ .|+.+|+.........+..+++
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~~-~Ti~eNI~~g~~~~~~~~~~~~ 522 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSW--IMP-GTIKDNIIFGLSYDEYRYTSVI 522 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCc--cCC-ccHHHHHHhccccchHHHHHHH
Confidence 345677788885553 5999999 9999999999998765 6999999975 555 5999998743222222233333
Q ss_pred HhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHhc--CCeE
Q psy2681 81 GMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNY--QGGV 146 (211)
Q Consensus 81 ~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~--~~ti 146 (211)
+..++.+ .... +...||||||||++||||++.+|+++||||||++||+.+...+.+. +... +.|+
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tv 601 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR 601 (1490)
T ss_pred HHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeE
Confidence 3222211 1222 4678999999999999999999999999999999999999999974 5443 5799
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+|||+++.+.. ||++++|++|+++. .|+++++.
T Consensus 602 ilvtH~~~~~~~-ad~ii~l~~g~i~~-~g~~~~l~ 635 (1490)
T TIGR01271 602 ILVTSKLEHLKK-ADKILLLHEGVCYF-YGTFSELQ 635 (1490)
T ss_pred EEEeCChHHHHh-CCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999875 89999999999864 67776654
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=4.5e-26 Score=228.57 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=135.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|..+.+++.-. ++|||++ +.|+++|++|+|..++ .++|++|++. ++ +.|+.+|+......+.++..+++
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l~-~~Ti~eNI~~g~~~~~~~~~~~~ 734 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAW--IQ-NDSLRENILFGKALNEKYYQQVL 734 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCcc--cc-CCcHHHHhhcCCccCHHHHHHHH
Confidence 456788888885554 5999999 9999999999998765 6999999975 44 57999998743333334334333
Q ss_pred HhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh-----cCC
Q psy2681 81 GMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-----YQG 144 (211)
Q Consensus 81 ~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-----~~~ 144 (211)
+..++. ..... +..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+ .++
T Consensus 735 ~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~ 813 (1522)
T TIGR00957 735 EACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK 813 (1522)
T ss_pred HHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCC
Confidence 332221 12233 5678999999999999999999999999999999999999999998853 146
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+|+|||+++.+.. +|++++|++|+++. .|+++++.
T Consensus 814 tvIlvTH~~~~l~~-~D~ii~l~~G~i~~-~g~~~~l~ 849 (1522)
T TIGR00957 814 TRILVTHGISYLPQ-VDVIIVMSGGKISE-MGSYQELL 849 (1522)
T ss_pred EEEEEeCChhhhhh-CCEEEEecCCeEEe-eCCHHHHH
Confidence 99999999999876 89999999999864 67776654
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3e-26 Score=180.94 Aligned_cols=175 Identities=23% Similarity=0.326 Sum_probs=148.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++--|+...+| |=+ ++||++. |+|..+|+.|++.... +..||--||.|. .|.++||++|+.
T Consensus 27 ~v~~Gelr~lI-GpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~Pt--Vfe~ltV~eNLe 103 (249)
T COG4674 27 SVDPGELRVLI-GPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPT--VFENLTVRENLE 103 (249)
T ss_pred EecCCeEEEEE-CCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCe--ehhhccHHHHHH
Confidence 45567778888 655 5999999 9999999999997543 346888899886 899999999985
Q ss_pred hhcC------------C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 67 KLFN------------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 67 ~~~~------------~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
...+ . .+.+++++|...||.+..+. ....||.||||++.|++.++++|++|++|||++|+--..
T Consensus 104 lA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~E 182 (249)
T COG4674 104 LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182 (249)
T ss_pred HHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHH
Confidence 2211 1 13467889999999988775 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.....++|+.+. .+|++|.|||.|+..++++|-+|+.|.+.. .|+.+++.
T Consensus 183 t~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~-EGsld~v~ 234 (249)
T COG4674 183 TEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA-EGSLDEVQ 234 (249)
T ss_pred HHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee-cccHHHhh
Confidence 999999999874 499999999999999999999999999864 78877664
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.5e-26 Score=179.30 Aligned_cols=135 Identities=24% Similarity=0.280 Sum_probs=107.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCe------EEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRL------RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 75 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~------~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~ 75 (211)
+..|.++.+++--. ++|||++ +. +++|++...... .++|++|
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q-------------------------- 67 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ-------------------------- 67 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH--------------------------
Confidence 45678888884443 5999999 74 368888654221 1222222
Q ss_pred HHHHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 76 SRRQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 76 ~~~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
.++++.+++... .+ +++.+||||||||++||||++.+ |+++||||||++||+.++..+.+.|+++ +.|||++
T Consensus 68 -~~~l~~~~L~~~~~~-~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv 145 (176)
T cd03238 68 -LQFLIDVGLGYLTLG-QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145 (176)
T ss_pred -HHHHHHcCCCccccC-CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 357888998753 44 47899999999999999999999 9999999999999999999999998764 6799999
Q ss_pred ecChHHHHhhCCeEEEEeCCce
Q psy2681 150 SHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i 171 (211)
||+++++ ..||++++|.+|..
T Consensus 146 SH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 146 EHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred eCCHHHH-HhCCEEEEECCCCC
Confidence 9999997 57999999988754
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=7.5e-26 Score=225.11 Aligned_cols=174 Identities=20% Similarity=0.155 Sum_probs=138.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcc----cCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGEL----TPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~----~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|..+.++ |-. ++|||+| |+|.. +|++|+|..++ +..++|++|++. +++.+|+.|++.
T Consensus 84 i~~Ge~~aIl-G~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~--~~~~lTV~E~l~ 160 (1394)
T TIGR00956 84 IKPGELTVVL-GRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV--HFPHLTVGETLD 160 (1394)
T ss_pred EECCEEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc--cCCCCCHHHHHH
Confidence 3456667777 554 5999999 99986 57899998653 235999999864 788999999875
Q ss_pred hh---c-------CCCHH----H-HHHHHHhCCCCCcccc----CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 67 KL---F-------NLPYE----K-SRRQLGMFGLPSYAHT----IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 67 ~~---~-------~~~~~----~-~~~~l~~~gl~~~~~~----~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
.. . +...+ + .+.+++.+||.+..++ ..++.|||||||||+||++|+.+|++++|||||+||
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgL 240 (1394)
T TIGR00956 161 FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGL 240 (1394)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 32 1 11221 2 2457899999876553 135789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc----CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 128 DIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 128 D~~~~~~l~~~l~~~----~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+.++..+.+.|+++ +.|||+++|+. +.+.+.+|++++|.+|+++ +.|+.++.
T Consensus 241 D~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~ 298 (1394)
T TIGR00956 241 DSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKA 298 (1394)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHH
Confidence 999999999999764 56999999996 7888999999999999986 46776554
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=5.9e-26 Score=225.92 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=136.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccC--CcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTP--NKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p--~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+..|..+.+++.-. ++|||++ |+|..++ .+|+|..++ ++.+||++|++. +++.+|+.|++....
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~l 980 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI--HSPQVTVRESLIYSAFL 980 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHh
Confidence 34566777773333 5999999 9998763 689987653 245899999864 788899999885321
Q ss_pred ----CCCH----HHHHHHHHhCCCCCccccCCC-----CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 ----NLPY----EKSRRQLGMFGLPSYAHTIPI-----RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 ----~~~~----~~~~~~l~~~gl~~~~~~~~~-----~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
..+. +.++++++.+||.+..+. .+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.
T Consensus 981 r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~-~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 981 RLPKEVSKEEKMMFVDEVMELVELDNLKDA-IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCChhHhCC-ccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 1122 236789999999876654 44 589999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChH-HHHhhCCeEEEEeC-CceeeecCCh
Q psy2681 137 EAIKNY---QGGVILVSHDER-LIRETDCELWALEK-KNIRKFNGDF 178 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~-~~~~~~~~v~~l~~-g~i~~~~g~~ 178 (211)
+.|+++ +.|||++||+++ .+.+.+|++++|.+ |+++ +.|+.
T Consensus 1060 ~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~G~~ 1105 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YSGPL 1105 (1470)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EECCc
Confidence 999875 579999999998 46788999999997 6665 45654
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.2e-25 Score=176.31 Aligned_cols=173 Identities=21% Similarity=0.219 Sum_probs=142.7
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+.|--+++|+... ++|||.| ++|.++|++|+|..+. .+.|-++||+|+..+.|.+++.+.+....
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l 116 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL 116 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh
Confidence 5677789995443 5999999 9999999999998653 35789999999877888887766553211
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+. .+++.+-|.++||-..-.+.++..||.||||||++||||+.+|+++|.||..++||...+.++.+++.++
T Consensus 117 ~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 117 NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred cccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 222 2456678999998554444578999999999999999999999999999999999999999999887654
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCC
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~ 177 (211)
|.+.|+|+.++-.+..++|.|+||+.|+++++..+
T Consensus 197 ek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 67999999999999999999999999999885433
No 351
>KOG0058|consensus
Probab=99.94 E-value=8.2e-26 Score=206.31 Aligned_cols=174 Identities=26% Similarity=0.326 Sum_probs=136.7
Q ss_pred ccccCeeeeecCC--CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGL--RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~--~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|...+++ |- .++||+.+ +-.++.|++|+|..++ +++||+|.|+|- +| .-|+.||+....
T Consensus 491 i~pGe~vALV-GPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv--LF-s~sI~eNI~YG~ 566 (716)
T KOG0058|consen 491 IRPGEVVALV-GPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV--LF-SGSIRENIAYGL 566 (716)
T ss_pred eCCCCEEEEE-CCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce--ee-cccHHHHHhcCC
Confidence 3467788888 55 36999999 9999999999998653 568999999985 44 468899997432
Q ss_pred -CCCHHHHHHHHHhCC-------CCCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFG-------LPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~g-------l~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+.+++..+.++.+ +++-.+. .+-.+||||||||+||||||+.+|.+|||||.||+||.++...+.+.
T Consensus 567 ~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 567 DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 334555544433322 2222221 14468999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|||+|.|.+..+++ +|+|+++++|++++ .|+.+++.+
T Consensus 647 L~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 647 LDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred HHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhh
Confidence 9765 5799999999999975 59999999999976 677776654
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=8.8e-26 Score=226.14 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=137.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|.++.+++.-. ++|||++ |.|.++|++|.+.. .+..++|++|+|. ++ +.|+.+|+......+.++..+++
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~--Lf-~gTIreNI~fg~~~~~e~~~~vl 714 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSW--IF-NATVRENILFGSDFESERYWRAI 714 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCccc--cc-cccHHHHhhcCCccCHHHHHHHH
Confidence 456788888995554 5999999 99999999987643 3457999999985 44 56999999755445667777777
Q ss_pred HhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHhc--CCeEE
Q psy2681 81 GMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~--~~tii 147 (211)
+..++.+.... .....||||||||++||||+..+|+++|||||||+||+.+.+.+.+. +... ++|+|
T Consensus 715 ~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~I 794 (1495)
T PLN03232 715 DVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794 (1495)
T ss_pred HHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEE
Confidence 76665432211 12356999999999999999999999999999999999998877654 4432 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+|||+++.+. .+|+|++|++|+++. .|+++++.
T Consensus 795 lvTH~~~~l~-~aD~Ii~L~~G~i~~-~Gt~~eL~ 827 (1495)
T PLN03232 795 LVTNQLHFLP-LMDRIILVSEGMIKE-EGTFAELS 827 (1495)
T ss_pred EEECChhhHH-hCCEEEEEeCCEEEE-ecCHHHHH
Confidence 9999999875 579999999999975 67877654
No 353
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4.4e-26 Score=182.43 Aligned_cols=167 Identities=23% Similarity=0.242 Sum_probs=133.2
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--- 69 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--- 69 (211)
.+.=+-+|+... ++|||++ ++|.+.|++|+|.... ...++-|||+|.....+.+|+.||+....
T Consensus 31 ~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg 110 (263)
T COG1101 31 EGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110 (263)
T ss_pred CCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC
Confidence 344456774443 5999999 9999999999997643 12467789999877889999999986321
Q ss_pred ---CCC-------HHHHHHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 ---NLP-------YEKSRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ---~~~-------~~~~~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.. .+...+.+..+ ||+..+.. ++.-|||||||-++++.|.+++|++|+|||-|++|||.....+++
T Consensus 111 ~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~-~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~ 189 (263)
T COG1101 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME 189 (263)
T ss_pred cccccchhhhHHHHHHHHHHHhhcccchhhhhcC-hhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHH
Confidence 111 12234455555 45666665 789999999999999999999999999999999999999988876
Q ss_pred HH----HhcCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 138 AI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 138 ~l----~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.= .+.+.|.+||||+++.+..+.+|.++|++|+|+.
T Consensus 190 lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 190 LTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 54 4557799999999999999999999999999974
No 354
>PTZ00243 ABC transporter; Provisional
Probab=99.93 E-value=2e-25 Score=223.88 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=133.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHH----
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---- 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~---- 77 (211)
+..|..+.+++.-. ++|||++ |+|.++|++|+|... ..++|++|++. ++ +.|+.+|+........+...
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l~-~~Tv~enI~~~~~~~~~~~~~~~~ 757 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAW--IM-NATVRGNILFFDEEDAARLADAVR 757 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCc--cC-CCcHHHHHHcCChhhHHHHHHHHH
Confidence 45677788884444 4899999 999999999999763 47999999975 44 56999998643222222222
Q ss_pred -----HHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-H-hc-CCeEE
Q psy2681 78 -----RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-K-NY-QGGVI 147 (211)
Q Consensus 78 -----~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~-~~-~~tii 147 (211)
+.++.+ |+...... +..+||||||||++||||++.+|+++||||||++||+.+...+.+.+ . .. ++|+|
T Consensus 758 ~~~l~~~l~~l~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvI 836 (1560)
T PTZ00243 758 VSQLEADLAQLGGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRV 836 (1560)
T ss_pred HhhhHHHHHHhhccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 234444 55544444 67899999999999999999999999999999999999988887643 2 22 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++||+++.+. .||++++|++|++. ..|+++++.
T Consensus 837 lvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~ 869 (1560)
T PTZ00243 837 LATHQVHVVP-RADYVVALGDGRVE-FSGSSADFM 869 (1560)
T ss_pred EEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHH
Confidence 9999999985 68999999999986 468877764
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.2e-25 Score=225.82 Aligned_cols=173 Identities=21% Similarity=0.291 Sum_probs=138.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCc-ceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNK-GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~-G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~ 79 (211)
++..|..+.+++.-. ++|||++ |.|.++|++ |+|.. +..++|++|+|. ++ +.|+.+|+......+.++..++
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--~~~Iayv~Q~p~--Lf-ngTIreNI~fg~~~d~e~y~~v 713 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--RGTVAYVPQVSW--IF-NATVRDNILFGSPFDPERYERA 713 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--cCeEEEEcCccc--cC-CCCHHHHHhCCCcccHHHHHHH
Confidence 456788899996664 5999999 999999999 89975 457999999985 44 5799999976544556677777
Q ss_pred HHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HHHhc--CCeE
Q psy2681 80 LGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNY--QGGV 146 (211)
Q Consensus 80 l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~--~~ti 146 (211)
++..++.+... . .....||||||||++||||+..+|+++|||||||+||+.+.+.+.+ .+... ++|+
T Consensus 714 l~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTv 793 (1622)
T PLN03130 714 IDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTR 793 (1622)
T ss_pred HHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEE
Confidence 77666543211 1 1345699999999999999999999999999999999998887754 45543 5799
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+|||++..+. .+|+|++|++|+++. .|+++++.
T Consensus 794 IlVTH~l~~l~-~aD~Ii~L~~G~i~e-~Gt~~eL~ 827 (1622)
T PLN03130 794 VLVTNQLHFLS-QVDRIILVHEGMIKE-EGTYEELS 827 (1622)
T ss_pred EEEECCHhHHH-hCCEEEEEeCCEEEE-eCCHHHHH
Confidence 99999998876 579999999999975 68877764
No 356
>KOG0059|consensus
Probab=99.93 E-value=1.3e-25 Score=215.30 Aligned_cols=172 Identities=26% Similarity=0.376 Sum_probs=144.7
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH---hh
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM---KL 68 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~---~~ 68 (211)
++-..+. |.+ ++||+++ ++|..+|++|++...+ ++.+||.||... +.+.+|..|.+. ..
T Consensus 591 gecfgLL-G~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~--l~~~lT~rEhL~~~arl 667 (885)
T KOG0059|consen 591 GECFGLL-GVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDA--LWEELTGREHLEFYARL 667 (885)
T ss_pred CceEEEe-cCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhh--hhhhccHHHHHHHHHHH
Confidence 3444544 766 5999999 9999999999997532 345999999864 889999988764 33
Q ss_pred cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+.+. +.++..++.+||.++.++ +++.||||+|+|+.+|.|++.+|++++|||||+|+||.+++.+++++.+.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~-~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k 746 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANK-QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK 746 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhcc-chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 45443 346778999999998886 79999999999999999999999999999999999999999999999876
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++||++||.+++++..|+|+.+|-+|++.. -|+..+++.
T Consensus 747 ~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c-iGs~q~LKs 787 (885)
T KOG0059|consen 747 NGKAIILTSHSMEEAEALCTRTAIMVIGQLRC-IGSPQELKS 787 (885)
T ss_pred cCCEEEEEcCCHHHHHHHhhhhheeecCeeEE-ecChHHHHh
Confidence 2399999999999999999999999999975 477766654
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=2.1e-25 Score=221.95 Aligned_cols=173 Identities=21% Similarity=0.231 Sum_probs=137.6
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCC---cceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPN---KGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
..|....++ |-. ++|||++ |+|.++|+ +|+|..++ ++.++|++|++. +++.+|+.|++...
T Consensus 189 ~~Ge~~~ll-GpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~--~~~~lTV~EtL~f~a~ 265 (1470)
T PLN03140 189 KPSRMTLLL-GPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDV--HVGVMTVKETLDFSAR 265 (1470)
T ss_pred eCCeEEEEE-cCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEeccccc--CCCcCcHHHHHHHHHH
Confidence 345555666 554 5999999 99999998 99998653 356999999864 78899999987531
Q ss_pred -cC----------CC-HH---------------------------HHHHHHHhCCCCCccc----cCCCCCCChHHHHHH
Q psy2681 69 -FN----------LP-YE---------------------------KSRRQLGMFGLPSYAH----TIPIRDLSGGQKARV 105 (211)
Q Consensus 69 -~~----------~~-~~---------------------------~~~~~l~~~gl~~~~~----~~~~~~LSgG~kqRv 105 (211)
.+ .. .+ .++.+++.+||++..+ +..++.|||||||||
T Consensus 266 ~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRV 345 (1470)
T PLN03140 266 CQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRV 345 (1470)
T ss_pred hcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceee
Confidence 11 00 00 1245788999976432 235789999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+||++++.+|++++|||||+|||+.+...+.+.|++. +.|+|+++|+. ..+..++|++++|.+|+++ +.|+.++
T Consensus 346 sia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv-y~G~~~~ 424 (1470)
T PLN03140 346 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV-YQGPRDH 424 (1470)
T ss_pred eehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE-EeCCHHH
Confidence 9999999999999999999999999999999999865 56999999996 6888999999999999986 4677655
Q ss_pred H
Q psy2681 181 Y 181 (211)
Q Consensus 181 ~ 181 (211)
.
T Consensus 425 ~ 425 (1470)
T PLN03140 425 I 425 (1470)
T ss_pred H
Confidence 4
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.8e-25 Score=171.78 Aligned_cols=120 Identities=35% Similarity=0.484 Sum_probs=100.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC-----------eEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
+..+....+++.-. ++|||++ ++|.++|++|++..+.. ..++|++|
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------------------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------------------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee---------------------
Confidence 45566777774433 5999999 99999999999976542 11222222
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
||+||+||++||++++.+|++++|||||+|||+.++..+.+.+.++ +.|++
T Consensus 81 --------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii 134 (157)
T cd00267 81 --------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134 (157)
T ss_pred --------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999999999999999865 36999
Q ss_pred EEecChHHHHhhCCeEEEEeCCc
Q psy2681 148 LVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
++||+++++..+|++++++.+|+
T Consensus 135 ~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 135 IVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999998874
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=195.90 Aligned_cols=176 Identities=26% Similarity=0.346 Sum_probs=136.2
Q ss_pred cccccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++.+|.-+.+|+-= -++|||.| +.|..+|.+|.|+.+. .++|||+||+-. +|+ -|+.||+.++.
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe--LF~-GTIaeNIaRf~ 434 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE--LFD-GTIAENIARFG 434 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce--ecC-CcHHHHHHhcc
Confidence 45678888999333 36999999 9999999999998643 458999999975 665 58999998776
Q ss_pred -CCCHHHHHHHHHhCCC-------CCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGL-------PSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl-------~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+.+++-+..+.-|. +.-.+. .--..||||||||+++||||..+|.+++||||-++||.+....+.+.
T Consensus 435 ~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 435 EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 3444444333322222 111121 02357999999999999999999999999999999999999999998
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|+|+|||.+..+. .+|++++|++|++..| |+.++...
T Consensus 515 i~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F-G~r~eVLa 560 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF-GPREEVLA 560 (580)
T ss_pred HHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc-CCHHHHHH
Confidence 8654 679999999999886 5699999999999765 67666544
No 360
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=2.5e-24 Score=177.04 Aligned_cols=95 Identities=27% Similarity=0.310 Sum_probs=84.1
Q ss_pred HHHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 77 RRQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 77 ~~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
.+.++.+++... .+ +++.+||||||||++||||++.+| +++||||||+|||+.++..+.+.|++. +.|||++|
T Consensus 118 ~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~it 196 (226)
T cd03270 118 LGFLVDVGLGYLTLS-RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVE 196 (226)
T ss_pred HHHHHHCCCCccccc-CccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 568999999763 44 478999999999999999999998 599999999999999999999998764 56999999
Q ss_pred cChHHHHhhCCeEEEE------eCCceee
Q psy2681 151 HDERLIRETDCELWAL------EKKNIRK 173 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l------~~g~i~~ 173 (211)
||++++ .+||++++| ++|+++.
T Consensus 197 H~~~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 197 HDEDTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred eCHHHH-HhCCEEEEeCCCccccCCEEEe
Confidence 999987 589999999 7787764
No 361
>KOG0062|consensus
Probab=99.92 E-value=7.6e-26 Score=199.54 Aligned_cols=173 Identities=23% Similarity=0.385 Sum_probs=128.8
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCe--EEE-EEeCCCCCCCCCCCCHHHHHHhh----cCCCHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRL--RIG-KFDQHSGEHLFPDDTPCEYLMKL----FNLPYEKS 76 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~--~ig-~v~q~~~~~l~~~~t~~e~~~~~----~~~~~~~~ 76 (211)
|+|-.+. |-+ ++|||+| |+- |.|...+.. -.| +++-.. ..+..+....+++..- .....+.+
T Consensus 106 GrRYGLv-GrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei 177 (582)
T KOG0062|consen 106 GRRYGLV-GRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEI 177 (582)
T ss_pred cccccee-CCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHh-hhhhccHHHHHHHHhhhhhhccchHHHH
Confidence 5566666 554 5999999 864 333322110 011 111110 1133444444555422 11133444
Q ss_pred HH-HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 77 RR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 77 ~~-~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
.. +|.-+|+++....+++++||||-|.|++|||||..+||+||||||||+||..+..|+.+.|..++.|+|+||||..|
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~F 257 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNF 257 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHH
Confidence 44 89999998876677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCeEEEEeCCceeeecCChHHHHHHHHH
Q psy2681 156 IRETDCELWALEKKNIRKFNGDFDDYREKLLT 187 (211)
Q Consensus 156 ~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~ 187 (211)
+..+|..|+.+++-++-.|.|+++.+.+..-+
T Consensus 258 Ln~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E 289 (582)
T KOG0062|consen 258 LNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE 289 (582)
T ss_pred HHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence 99999999999999998899999987654333
No 362
>KOG0055|consensus
Probab=99.92 E-value=1.1e-24 Score=208.50 Aligned_cols=173 Identities=26% Similarity=0.331 Sum_probs=140.2
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
+.+|.-++++ |-- ++||.+. +-..+.|++|.|..++ |+++|.|.|+|. || +.|+.||+...
T Consensus 1013 i~~GqTvALV-G~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~--LF-~~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALV-GPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV--LF-NGTIRENIAYGS 1088 (1228)
T ss_pred ecCCCEEEEE-CCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch--hh-cccHHHHHhccC
Confidence 4567778888 553 5999999 8999999999998643 568999999985 44 57899999754
Q ss_pred cCCCHHHHHHHHHhCCC-------C----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGL-------P----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl-------~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
...+.+++.++++..+. + ..... +-.+||||||||++||||++.+|++|||||.||+||.++.+.+.+
T Consensus 1089 ~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1089 EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE 1167 (1228)
T ss_pred CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHH
Confidence 22456666666655433 2 22222 456899999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|.+. +.|.|+|.|.+..+.. ||.|+|+++|++++ .|+.+++..
T Consensus 1168 ALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1168 ALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred HHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 99875 6799999999999964 69999999999986 788877654
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.4e-24 Score=167.60 Aligned_cols=144 Identities=27% Similarity=0.342 Sum_probs=117.5
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCC----------eEEEEEeCCCCCCCCCCCCHHHHHHhhc---C-CCHH
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPYE 74 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~-~~~~ 74 (211)
.|.|-+ ++|||+| ++|+..|++|+|.++.. ..+-|+--.+. +=+.+|++||+.++. + .+..
T Consensus 32 ~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~~~~~ 109 (209)
T COG4133 32 QITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG--IKTELTALENLHFWQRFHGSGNAA 109 (209)
T ss_pred EEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcccc--ccchhhHHHHHHHHHHHhCCCchh
Confidence 344665 5999999 99999999999987531 12334433333 567899999987543 3 3456
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEec
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 151 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsH 151 (211)
.+.++++.|||.+..+. |+.+||.|||+||+|||-++..+++.||||||++||..+...+..++... ++-||++||
T Consensus 110 ~i~~Al~~vgL~g~~dl-p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 110 TIWEALAQVGLAGLEDL-PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred hHHHHHHHcCccccccc-chhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 78899999999988875 99999999999999999999999999999999999999999999999765 568999999
Q ss_pred ChHHHHh
Q psy2681 152 DERLIRE 158 (211)
Q Consensus 152 d~~~~~~ 158 (211)
+..-+..
T Consensus 189 q~l~~~~ 195 (209)
T COG4133 189 QPLPIAS 195 (209)
T ss_pred CccCCCc
Confidence 8876643
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.90 E-value=2.2e-23 Score=168.09 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=108.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcc---------eEEec--------CCeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKG---------ELRKS--------PRLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G---------~i~~~--------~~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..+ ...++ |-+ ++|||++ ++|++.|..| ++... ....++|+||++... +.
T Consensus 20 ~~~g-~~~i~-G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-~~------ 90 (197)
T cd03278 20 FPPG-LTAIV-GPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-YS------ 90 (197)
T ss_pred cCCC-cEEEE-CCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-ee------
Confidence 3344 34444 665 5999999 9988866533 23211 135799999998522 11
Q ss_pred HHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 64 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
....+++.++++. .+..+ +++.+||||||||++||++++ .+|+++||||||++||+.++..+.+.|
T Consensus 91 ------~~~~~~~~~~l~~---~~~~~-~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l 160 (197)
T cd03278 91 ------IISQGDVSEIIEA---PGKKV-QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLL 160 (197)
T ss_pred ------EEehhhHHHHHhC---CCccc-cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0013456667766 33344 478999999999999999997 467999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
++. +.|||++||+++++ ..||+++.+...
T Consensus 161 ~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~~ 191 (197)
T cd03278 161 KEFSKETQFIVITHRKGTM-EAADRLYGVTMQ 191 (197)
T ss_pred HHhccCCEEEEEECCHHHH-hhcceEEEEEec
Confidence 876 46999999999987 579999887643
No 365
>KOG0061|consensus
Probab=99.90 E-value=2.4e-23 Score=192.79 Aligned_cols=173 Identities=27% Similarity=0.299 Sum_probs=140.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccC---CcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTP---NKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p---~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+.|..+++++.=. ++|||++ ++|.... .+|+|..++ ++..|||.|+.. +++.+||.|.+....
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~--l~~~LTV~EtL~f~A~ 130 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDV--LLPTLTVRETLRFSAL 130 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccc--ccccccHHHHHHHHHH
Confidence 34567778884443 5999999 9998864 789998776 346899999864 899999999875321
Q ss_pred ----C-CC----HHHHHHHHHhCCCCCccccCCCC-----CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 70 ----N-LP----YEKSRRQLGMFGLPSYAHTIPIR-----DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 70 ----~-~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
. .+ +++++++++.+|+....++ .++ .+|||||+||+||.-++++|.+|+|||||+|||..+...+
T Consensus 131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t-~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~v 209 (613)
T KOG0061|consen 131 LRLPSSLSKEEKRERVEEVISELGLEKCADT-LIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQV 209 (613)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHcCChhhccc-eecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHH
Confidence 1 11 3457889999999866665 564 5999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 136 AEAIKNY---QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.+.|+++ |+|||++-|.+ ..+.+..|++++|.+|+++ |.|+..+
T Consensus 210 v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~ 257 (613)
T KOG0061|consen 210 VQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRE 257 (613)
T ss_pred HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHH
Confidence 9999876 67999999997 4566778999999999875 5676644
No 366
>KOG0054|consensus
Probab=99.89 E-value=9.8e-23 Score=198.65 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=142.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
+-.|..+++++-.. ++|+|+. |.|.++..+|++..++ .++|++|.|. ..+-|+.||+......++++.+++++
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g--siaYv~Q~pW---I~ngTvreNILFG~~~d~~rY~~Vi~ 618 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--SVAYVPQQPW---IQNGTVRENILFGSPYDEERYDKVIK 618 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC--eEEEeccccH---hhCCcHHHhhhcCccccHHHHHHHHH
Confidence 34577788886554 5999999 9999999999998876 4999999985 45679999998777777888888777
Q ss_pred hCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHhc--CCeEEE
Q psy2681 82 MFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNY--QGGVIL 148 (211)
Q Consensus 82 ~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~--~~tiii 148 (211)
...|..+... .+--+||||||||++||||+.++++++|||-|+|++|...-..+++- ++.+ ++|+|+
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL 698 (1381)
T KOG0054|consen 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL 698 (1381)
T ss_pred HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE
Confidence 7766543221 13467999999999999999999999999999999999987777655 4333 579999
Q ss_pred EecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||.++++.+ +|.|++|++|++.. .|+++++.+
T Consensus 699 VTHql~~L~~-ad~Iivl~~G~I~~-~Gty~el~~ 731 (1381)
T KOG0054|consen 699 VTHQLQFLPH-ADQIIVLKDGKIVE-SGTYEELLK 731 (1381)
T ss_pred EeCchhhhhh-CCEEEEecCCeEec-ccCHHHHHh
Confidence 9999999865 59999999999975 799998764
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=159.32 Aligned_cols=157 Identities=25% Similarity=0.304 Sum_probs=123.5
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCC---cceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPN---KGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~---~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.|+...+|+--. ++|||+. +.|.+.++ .|+++.+. ++++|++||++- +|+.++|.+|+....
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~l--LFphlsVg~Nl~fAlp~ 104 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDAL--LFPHLSVGQNLLFALPA 104 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccc--cccccccccceEEecCc
Confidence 455566663233 4899999 98888663 68887542 568999999976 899999999986322
Q ss_pred ---CC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH----HHh
Q psy2681 70 ---NL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA----IKN 141 (211)
Q Consensus 70 ---~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~----l~~ 141 (211)
+. .+..+...+++.|++...++ .+..||||||.||++.|+|+..|+.++||||||.||..-+.++.++ ++.
T Consensus 105 ~~KG~aRr~~a~aAL~~~gL~g~f~~-dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ 183 (213)
T COG4136 105 TLKGNARRNAANAALERSGLDGAFHQ-DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA 183 (213)
T ss_pred ccccHHHHhhHHHHHHHhccchhhhc-ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 11 23446788999999988876 7899999999999999999999999999999999999776666555 455
Q ss_pred cCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 142 YQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 142 ~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.+...++||||...+. ...||+.+
T Consensus 184 agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 184 AGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred cCCCeEEEecccccCC-CCCeeeee
Confidence 6778999999999986 55676644
No 368
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.4e-22 Score=180.99 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=135.0
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHHhh--
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~~~-- 68 (211)
.|+-+.+-+.+. +-|-|++ +.|.-++.+|+|..++ +..++|+|.+.. ..++..+++.+|+...
T Consensus 284 ~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l 363 (500)
T COG1129 284 AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL 363 (500)
T ss_pred CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhh
Confidence 455555553333 4667888 9999999999998654 235999998764 4578888888886321
Q ss_pred cC------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FN------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+ ...++++.+.+++...-...++..||||.||||.|||.|+.+|++|||||||.|+|+-++.+++++
T Consensus 364 ~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~l 443 (500)
T COG1129 364 RRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443 (500)
T ss_pred hhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHH
Confidence 11 11 123567888898865434458999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ |.+||++|.++.++..+||||+||.+|+++.
T Consensus 444 i~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 444 IRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9876 6799999999999999999999999999875
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.3e-22 Score=169.84 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHhhcCC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHH
Q psy2681 56 FPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIES 131 (211)
Q Consensus 56 ~~~~t~~e~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~---p~lllLDEPt~gLD~~~ 131 (211)
+.++|+.|++..+... ...+..++++.+||......+++.+|||||+||++||++|+.+ |+++||||||+|||+..
T Consensus 128 v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~ 207 (261)
T cd03271 128 VLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD 207 (261)
T ss_pred HhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH
Confidence 3566777765443222 1245667899999986322347899999999999999999996 79999999999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceee
Q psy2681 132 IDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRK 173 (211)
Q Consensus 132 ~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~ 173 (211)
+..+.+.|+++ +.|||++|||++++. .+|+++.| ++|+++.
T Consensus 208 ~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~ 257 (261)
T cd03271 208 VKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVA 257 (261)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence 99999998765 579999999999986 68999999 6777753
No 370
>KOG0927|consensus
Probab=99.89 E-value=1e-22 Score=180.72 Aligned_cols=108 Identities=33% Similarity=0.588 Sum_probs=97.5
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC-eEEEEecChH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GVILVSHDER 154 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-tiiivsHd~~ 154 (211)
+.++|.-+|+......+++.+||||+|.|++|||+|..+|++|||||||||||++++.+|.+.|.++.. +++++||+.+
T Consensus 201 ~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD 280 (614)
T KOG0927|consen 201 AAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD 280 (614)
T ss_pred HHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence 345677777755444458999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred HHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 155 LIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++..+|..|+.+.+++.+.|.|+++.|..
T Consensus 281 fln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 281 FLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred hhhhHhhhhheecccceeeecCCHHHHhh
Confidence 99999999999999998889999998754
No 371
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=2e-22 Score=176.07 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=143.4
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC---CHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR 78 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~---~~~~~~~ 78 (211)
-.++.|.++ |=+ ++||+.+ ++|.++|++|. ....+++|=||.-.+ ..+.||.+++....+. +..-..+
T Consensus 365 ~~gEvigil-GpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~e 438 (591)
T COG1245 365 YDGEVIGIL-GPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTE 438 (591)
T ss_pred ecceEEEEE-CCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHh
Confidence 345667777 554 5999999 99999999998 445689999997542 3466888887643221 1122346
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDER 154 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~ 154 (211)
+++.++|++..++ ++.+|||||.|||+||.||..++++++||||++.||.+.+..+.+.|+++ ++|.++|.||+.
T Consensus 439 i~~pl~l~~i~e~-~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 439 IVKPLNLEDLLER-PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred hcCccchHHHHhc-ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee
Confidence 8899999887775 89999999999999999999999999999999999999988888777765 579999999999
Q ss_pred HHHhhCCeEEEEeC--CceeeecCC--hHHHHHHHHHHhhhhhhcCCccccc
Q psy2681 155 LIRETDCELWALEK--KNIRKFNGD--FDDYREKLLTSLGEAMVYNPSVAAE 202 (211)
Q Consensus 155 ~~~~~~~~v~~l~~--g~i~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
++..++||++++.. |+--...++ ..+-.+..+..+.--|+.++...++
T Consensus 518 ~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTFRRD~~t~RP 569 (591)
T COG1245 518 MIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTFRRDPETGRP 569 (591)
T ss_pred hhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHcCcEEecCcccCCC
Confidence 99999999998863 211111121 2233456677777667776654433
No 372
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-21 Score=156.72 Aligned_cols=175 Identities=25% Similarity=0.320 Sum_probs=137.9
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcc--cCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGEL--TPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
..|+.+.++ |=+ ++|||.+ |+|.- ++++|+|..++ +..+...||.|. -++..++.+++..
T Consensus 28 ~~GEvhaiM-GPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~--ei~GV~~~~fLr~ 104 (251)
T COG0396 28 KEGEVHAIM-GPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV--EIPGVTNSDFLRA 104 (251)
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCc--cCCCeeHHHHHHH
Confidence 456778888 554 5999999 99965 78999997543 345777899985 3667777777753
Q ss_pred hcCC----------CHHHHHHHHHhCCCCCccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 68 LFNL----------PYEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 68 ~~~~----------~~~~~~~~l~~~gl~~~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
..+. ....+++.++.+++++...+|.+. .+|||||+|..|+.+++.+|++.|||||-||||..+.+.+.
T Consensus 105 a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~ 184 (251)
T COG0396 105 AMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184 (251)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHH
Confidence 2211 134567789999998733344665 59999999999999999999999999999999999999998
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhC-CeEEEEeCCceeeecCChHHHHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETD-CELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~-~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.++++ +.++++|||....+..+. |++.+|-+|+++. .|++ ++.++
T Consensus 185 ~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~~-el~~~ 234 (251)
T COG0396 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGDP-ELAEE 234 (251)
T ss_pred HHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCCH-HHHHH
Confidence 888766 569999999999987764 8999999999975 6776 44443
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-23 Score=162.88 Aligned_cols=148 Identities=22% Similarity=0.348 Sum_probs=120.9
Q ss_pred Ccccccc-ccCcccCCcceEEec-------------------CCeEEEEEeCCCCCCCCCCCCHHHHHHh---hcCCC--
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKS-------------------PRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP-- 72 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~-------------------~~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~~~-- 72 (211)
++|||++ +.|.+.|++|+|... .+..|||+.|... ..|.-...+.++. ..+.+
T Consensus 49 GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~ 126 (235)
T COG4778 49 GKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPRE 126 (235)
T ss_pred cHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHH
Confidence 5899999 999999999999742 1456999999753 3455444444432 12333
Q ss_pred --HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 73 --YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 73 --~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
..++..++.++++++.+...++..+||||||||.|||.++.+-++|+|||||++||..++..+.++|.+. |.++|
T Consensus 127 ~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlv 206 (235)
T COG4778 127 VARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206 (235)
T ss_pred HHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEE
Confidence 3456778999999886666689999999999999999999999999999999999999999999999764 56899
Q ss_pred EEecChHHHHhhCCeEEEEe
Q psy2681 148 LVSHDERLIRETDCELWALE 167 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~ 167 (211)
=+=||.+.-+.+|||++.+.
T Consensus 207 GIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 207 GIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred EeeccHHHHHHHhhheeecc
Confidence 99999999999999998664
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=5.5e-22 Score=161.59 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=108.8
Q ss_pred eeeeecCCC--Ccccccc-ccCcc-cCCcceEEe----------cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGEL-TPNKGELRK----------SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~-~p~~G~i~~----------~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~ 74 (211)
.+.++ |-+ ++|||++ |++.+ .+..+.... .....+++++|++.. .+. +.. .++.+..
T Consensus 30 ~~~i~-G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~-~~~---~~r----~~gl~~~ 100 (213)
T cd03279 30 LFLIC-GPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGK-KYR---VER----SRGLDYD 100 (213)
T ss_pred EEEEE-CCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCe-EEE---EEE----ecCCCHH
Confidence 55555 665 5999999 88533 233232221 113468888887641 111 111 1133333
Q ss_pred HHHH--HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 75 KSRR--QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN----------NPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 75 ~~~~--~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~----------~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.+ .+...++.+..+. ++..||+||+||++||+|++. +|+++||||||++||+.++..+.+.+.++
T Consensus 101 ~~~~~~~l~~g~l~~~l~~-~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 101 QFTRIVLLPQGEFDRFLAR-PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred HHHHhhhhhhcchHHHhcC-CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3322 2344445555554 789999999999999999985 57899999999999999999999988765
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+.|||++||+++++..++++++++++|+.
T Consensus 180 ~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 180 RTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 46999999999999999999999998864
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=1.9e-21 Score=162.18 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=113.4
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCC-cceEEec--------------CCeEEEEEeCCCCC-------CCCCCCCHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPN-KGELRKS--------------PRLRIGKFDQHSGE-------HLFPDDTPCE 63 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~~--------------~~~~ig~v~q~~~~-------~l~~~~t~~e 63 (211)
.+..|.|-+ ++|||++ |.+.+.+. .|+++.. ....+++++|++.. .+.+.+++.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 344455776 5999999 99988775 3454321 12378999998531 1233444443
Q ss_pred HHHh-----h-c---CCCHHHHHHHHHhCCCC--------------------CccccCCCCCCChHHHHHHHHHHHHh--
Q psy2681 64 YLMK-----L-F---NLPYEKSRRQLGMFGLP--------------------SYAHTIPIRDLSGGQKARVALAELTL-- 112 (211)
Q Consensus 64 ~~~~-----~-~---~~~~~~~~~~l~~~gl~--------------------~~~~~~~~~~LSgG~kqRv~iaral~-- 112 (211)
++.. . . ....+++.++++.+|+. +..+ .++.+||+|||||++||+|++
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~-~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWK-ESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhc-ccccccCHHHHHHHHHHHHHHHh
Confidence 2211 1 1 12345678899999986 2223 368999999999999999998
Q ss_pred --cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 113 --NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 113 --~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
.+|+++|+||||++||+.++..+.+.|+++ +.++|++||+.+.. +.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~-~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMF-NNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH-HhCCEEEEEE
Confidence 578999999999999999999999999875 46899999996555 5689998654
No 376
>KOG0054|consensus
Probab=99.85 E-value=2.1e-21 Score=189.43 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=140.1
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
|.|..++|+.++ |-. ++|||.. +..+..|.+|+|..++ |.+++.+||+|- +|. -|++.|+--
T Consensus 1161 ~~I~p~eKVGIV-GRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv--LFs-GTvR~NLDP 1236 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIV-GRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV--LFS-GTVRFNLDP 1236 (1381)
T ss_pred EEEcCCceEEEe-CCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc--eec-CccccccCc
Confidence 678889999999 664 5999999 9999999999998653 678999999985 443 467777654
Q ss_pred hcCCCHHHHHHHHHhCCCCCc-------ccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSY-------AHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~-------~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+...+++++.++|+...|.+. ++. .--.++|-||||-++|||||+.+.+||+|||.|+++|+++-..+.+
T Consensus 1237 f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~ 1316 (1381)
T KOG0054|consen 1237 FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 1316 (1381)
T ss_pred ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHH
Confidence 444456666666666554321 111 1236799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|++. +.|||.|-|.++.+... |||+||++|++++++ ++..+
T Consensus 1317 tIR~~F~dcTVltIAHRl~TVmd~-DrVlVld~G~v~Efd-sP~~L 1360 (1381)
T KOG0054|consen 1317 TIREEFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFD-SPAEL 1360 (1381)
T ss_pred HHHHHhcCCeEEEEeeccchhhhc-CeEEEeeCCeEeecC-ChHHH
Confidence 99874 57999999999999875 999999999999874 44443
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.85 E-value=5.6e-21 Score=154.84 Aligned_cols=147 Identities=30% Similarity=0.360 Sum_probs=109.0
Q ss_pred eeeecCCC--Ccccccc-c----cCcccCCcceEEe--------cCCeEEEEEeCCC-CCCC--CCCCCHHHHHHhhcCC
Q psy2681 10 IAVLQGLR--NPLSFIK-P----KGELTPNKGELRK--------SPRLRIGKFDQHS-GEHL--FPDDTPCEYLMKLFNL 71 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i----~G~~~p~~G~i~~--------~~~~~ig~v~q~~-~~~l--~~~~t~~e~~~~~~~~ 71 (211)
+-.|.|-+ ++|||++ + .|...|++|.+.. .....+++++|++ ...+ ....++++++...
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~--- 100 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC--- 100 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee---
Confidence 44555776 5999999 8 5999998875431 1245789999986 2211 2233566655321
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHH------HHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhc--
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR------VALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNY-- 142 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqR------v~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~-- 142 (211)
......+.+ + +++.+||+||+|| ++||+|++.+|+++++||||++||+.++. .+.++|+++
T Consensus 101 ~~~~~~~~~---------~-~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~ 170 (204)
T cd03240 101 HQGESNWPL---------L-DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170 (204)
T ss_pred chHHHHHHH---------h-cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 223333333 3 3678999999996 78999999999999999999999999999 999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+.|||++||+++.+. .||+++.|.+.+
T Consensus 171 ~~~~~iiiitH~~~~~~-~~d~i~~l~~~~ 199 (204)
T cd03240 171 QKNFQLIVITHDEELVD-AADHIYRVEKDG 199 (204)
T ss_pred ccCCEEEEEEecHHHHh-hCCEEEEEeeCC
Confidence 459999999999875 689999886543
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=6.2e-21 Score=157.90 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=65.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
.++..||||||||++||+|++. +|+++|+||||++||+.++..+++.|+++ +.+||++||+. ++.++||++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~~~~d~i~~ 232 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELLEVADKFYG 232 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHhhCCEEEE
Confidence 3789999999999999999973 68999999999999999999999999887 35777777775 46689999998
Q ss_pred Ee
Q psy2681 166 LE 167 (211)
Q Consensus 166 l~ 167 (211)
|.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 75
No 379
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.83 E-value=2.6e-21 Score=146.40 Aligned_cols=113 Identities=35% Similarity=0.485 Sum_probs=90.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..+..+.++ |-+ ++|||++ ++|..+|++|.|..+. +..++|++|++. +++..++.++.
T Consensus 8 i~~g~~~~i~-G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~tv~~~~---- 80 (137)
T PF00005_consen 8 IKPGEIVAIV-GPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ--LFPGLTVRENE---- 80 (137)
T ss_dssp EETTSEEEEE-ESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC--HHTTSBHHHHH----
T ss_pred EcCCCEEEEE-ccCCCccccceeeecccccccccccccccccccccccccccccccccccccc--ccccccccccc----
Confidence 4566777777 554 6999999 9999999999997642 346999999854 77888888872
Q ss_pred CCCHHHHHHHHHhCCCCCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
....+.++++.+++...... +++.+||+|||||++||+|++.+|+++|||||||
T Consensus 81 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 --SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp --HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred --ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 24457788888887654332 2339999999999999999999999999999997
No 380
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-20 Score=163.63 Aligned_cols=173 Identities=25% Similarity=0.276 Sum_probs=128.4
Q ss_pred cccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-C
Q psy2681 5 CLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-N 70 (211)
Q Consensus 5 ~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~ 70 (211)
-++..+.+++-= -++||+++ +...+.+++|.|..++ ++.||.+||+.- +| +.|...|+.... .
T Consensus 287 ~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv--LF-NDti~yni~ygr~~ 363 (497)
T COG5265 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV--LF-NDTIAYNIKYGRPD 363 (497)
T ss_pred cCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce--eh-hhhHHHHHhccCcc
Confidence 466777777332 25899999 8999999999998653 456999999864 44 446666665322 2
Q ss_pred CCHHHHHHHHHhCCCC-------Ccccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 71 LPYEKSRRQLGMFGLP-------SYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~-------~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
...+++.+..+...+. +-.+. .+.-.|||||||||+|||+++.+|++++|||.||+||..+.+++...|+
T Consensus 364 at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~ 443 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence 2333333333332221 11111 1223599999999999999999999999999999999999999999998
Q ss_pred hc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+. +.|-+++.|.+..+.. +|.+++|++|++++ .|+-.++.
T Consensus 444 ~~~~~rttlviahrlsti~~-adeiivl~~g~i~e-rg~h~~ll 485 (497)
T COG5265 444 EVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGTHEELL 485 (497)
T ss_pred HHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEe-cCcHHHHH
Confidence 76 5699999999999975 59999999999986 67766554
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=8.9e-22 Score=153.49 Aligned_cols=186 Identities=18% Similarity=0.207 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
|.-+|+.+-+|+=.. ++|||+- ++|++ |-+|+|...+ .++-+|+.|+..+ ...+.|+.|+....
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p--~f~mpV~~YL~L~q 97 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP--PFAMPVWHYLTLHQ 97 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCC--cchhhhhhhhhhcC
Confidence 566889999994333 5999999 99987 6699997643 2345788887642 34567888875332
Q ss_pred CC--CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 ~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. ....+..+...+++++++.+ .+++|||||-|||-+|..+++ ..+++|+|||.|+||+..+..+-.+|.
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~R-s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~ 176 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhh-hhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHH
Confidence 21 12345678889999998875 789999999999999988763 457999999999999999988888887
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH-HHHHHHHHhhhhh
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLTSLGEAM 193 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~-~~~~~~~~~~~~~ 193 (211)
++ +.+|||++||++--.+-++++|.+..|++.. .|..++ +....+.+.++..
T Consensus 177 ~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~-~G~~~eVlt~~vL~q~fg~~ 232 (248)
T COG4138 177 ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA-SGRREEVLTPPVLAQAYGMN 232 (248)
T ss_pred HHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe-ecchhhhcChHHHHHHhccc
Confidence 66 5699999999999999999999999999875 566554 4456777776543
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=1.6e-21 Score=158.91 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=105.2
Q ss_pred eeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-----------cCCCHH-
Q psy2681 10 IAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-----------FNLPYE- 74 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-----------~~~~~~- 74 (211)
+-.|.|-+ ++||+++ |.-.. +..+......+++++++... +++.+++.++...+ ++....
T Consensus 27 i~~ivGpNGaGKSTll~~i~~~~---G~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 101 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSMLFVF---GFRASKMRQKKLSDLIHNSA--GHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDH 101 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---ccCHHHhhhhhHHHHhcCCC--CCCCCceEEEEEEEEeCCCHHHHHHCCcCCCC
Confidence 34444776 5999999 75111 11111111235777777653 45555544432211 111111
Q ss_pred -H----HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--C
Q psy2681 75 -K----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--Q 143 (211)
Q Consensus 75 -~----~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~ 143 (211)
. ..++++.+++++..++ ++..||+|||||++||+|++. +|+++++||||+|||+.++..+.+.++++ +
T Consensus 102 ~~~~v~~~~~~~~~~L~~~~~~-~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~ 180 (212)
T cd03274 102 NRFLILQGEVEQIAQMPKKSWK-NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN 180 (212)
T ss_pred CceEEcCCcEEEeecccccccc-chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC
Confidence 1 1445677888766654 689999999999999999974 58999999999999999999999999987 3
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.|+|++||+. .+.++||++++|..-
T Consensus 181 ~~~iivs~~~-~~~~~~d~v~~~~~~ 205 (212)
T cd03274 181 AQFIVISLRN-NMFELADRLVGIYKT 205 (212)
T ss_pred CEEEEEECcH-HHHHhCCEEEEEEec
Confidence 5999999995 566899999988643
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.2e-19 Score=146.36 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=104.9
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCC-----cce----EEe--cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPN-----KGE----LRK--SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-----~G~----i~~--~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
..-.+.+|.|-+ ++|||+. +....... .|. +.. .....+.+.+++.. ++++ .....
T Consensus 19 f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~~~--------~~~~~ 88 (198)
T cd03276 19 FGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LDAN--------PLCVL 88 (198)
T ss_pred cCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--ccCC--------cCCHH
Confidence 334465677876 5999999 74222111 121 001 11345788888754 3331 01111
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-----
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNY----- 142 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----- 142 (211)
....+.++++. .+... +++++||+|||||++||+|+ +.+|+++||||||+|||+.++..+.++|.+.
T Consensus 89 ~~~~~~~~l~~---~~~~~-~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~ 164 (198)
T cd03276 89 SQDMARSFLTS---NKAAV-RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQP 164 (198)
T ss_pred HHHHHHHHhcc---ccccC-CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCC
Confidence 23456667766 44444 47899999999999999999 5899999999999999999999999988763
Q ss_pred C-CeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 143 Q-GGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 143 ~-~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+ .|||++||+++.+..+ |+|.++..+.
T Consensus 165 ~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 165 GRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred CcEEEEEECCcccccccc-cceeEEEecC
Confidence 2 3899999999999887 8999887653
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=7e-20 Score=152.44 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=106.8
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------------CeEEEEEeCCCCCC-CCCCCCHHH----H
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------------RLRIGKFDQHSGEH-LFPDDTPCE----Y 64 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------------~~~ig~v~q~~~~~-l~~~~t~~e----~ 64 (211)
.+..|.|-+ ++|||+. |++...+..|.++... ...+...++..... .....++.+ +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 355666886 5999999 9988877666654210 12344444322100 000000000 0
Q ss_pred HHhhcCCCHHHHHHHHHhCCCCCcc---------------------ccCCCCCCChHHHHHHHHHHHHhcC----CCeEE
Q psy2681 65 LMKLFNLPYEKSRRQLGMFGLPSYA---------------------HTIPIRDLSGGQKARVALAELTLNN----PDILI 119 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~l~~~gl~~~~---------------------~~~~~~~LSgG~kqRv~iaral~~~----p~lll 119 (211)
...........+.++++.+|+.... ...++.+||+|||||++||++++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 0001123355667788888884210 0124589999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 120 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 120 LDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
|||||++||+.++..+.+.|.++ +.+||+|||+.+.+ +.||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 99999999999999999999876 45999999998776 67999988764
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.8e-19 Score=172.51 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=87.1
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.+..+||......+++.+|||||+|||.||++|+.+| +++||||||+|||+.+...+.+.|+++ +.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677888654223588999999999999999999986 899999999999999999999999765 56999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
+++. .||++++| ++|+++ +.|+..++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el 581 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEI 581 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEe-eccCHHHH
Confidence 9986 89999999 788875 46777665
No 386
>KOG0056|consensus
Probab=99.81 E-value=1.6e-20 Score=165.47 Aligned_cols=172 Identities=23% Similarity=0.266 Sum_probs=127.5
Q ss_pred ccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CC
Q psy2681 6 LKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL 71 (211)
Q Consensus 6 ~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~ 71 (211)
.|-.+++++-- -++||+++ +......++|.|+.++ |..||.|||+.- +|. .|+..|+.... ..
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtv--LFN-dTI~yNIryak~~A 639 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTV--LFN-DTILYNIRYAKPSA 639 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcce--eec-ceeeeheeecCCCC
Confidence 45667777333 36999999 8899999999998654 567999999864 444 45555554221 12
Q ss_pred CHHHHHHHHH-------hCCCCCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 72 PYEKSRRQLG-------MFGLPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 72 ~~~~~~~~l~-------~~gl~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+++.++.+ .+++++-... .+--.|||||||||+|||+++..|.+++|||.||+||..+.+.+...|.+
T Consensus 640 sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~r 719 (790)
T KOG0056|consen 640 SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALAR 719 (790)
T ss_pred ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHH
Confidence 2333333222 2344332222 12336999999999999999999999999999999999999999999988
Q ss_pred c--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
. +.|-|+|.|.+..+.. +|.|+++.+|.+++ .|.-+++.
T Consensus 720 lca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvE-rG~HeeLl 760 (790)
T KOG0056|consen 720 LCANRTTIVVAHRLSTIVN-ADLILVISNGRIVE-RGRHEELL 760 (790)
T ss_pred HhcCCceEEEeeeehheec-ccEEEEEeCCeEee-cCcHHHHH
Confidence 7 5699999999999975 59999999999976 67766654
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.81 E-value=1e-18 Score=167.63 Aligned_cols=123 Identities=28% Similarity=0.322 Sum_probs=99.3
Q ss_pred CCCHHHHHHhhcCC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHH
Q psy2681 58 DDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESID 133 (211)
Q Consensus 58 ~~t~~e~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~ 133 (211)
++|+.|++..+... ...+..+.++.+||......+++.+|||||+||+.||++|+.+| +++||||||+|||+..+.
T Consensus 791 ~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~ 870 (943)
T PRK00349 791 DMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR 870 (943)
T ss_pred cCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence 56777766544222 12345678999999763233478999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
.+.+.|+++ +.|||+||||++.+. .+|+++.| ++|+++ +.|+.+++.
T Consensus 871 ~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~ 926 (943)
T PRK00349 871 KLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVA 926 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHH
Confidence 999998765 569999999999985 68999999 577776 467776654
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.81 E-value=1.7e-19 Score=172.87 Aligned_cols=102 Identities=26% Similarity=0.328 Sum_probs=88.5
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
+++.+||.....++++.+|||||+|||+||++|+.+| +++||||||+|||+.....+.++|+++ +.|||+||||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6888899755223589999999999999999999997 999999999999999999999998765 57999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+++. .||++++| .+|+++ +.|+++++.
T Consensus 552 ~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~ 584 (943)
T PRK00349 552 DTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIM 584 (943)
T ss_pred HHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHh
Confidence 9986 59999999 888875 578877763
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.79 E-value=6.7e-19 Score=160.31 Aligned_cols=160 Identities=25% Similarity=0.236 Sum_probs=125.3
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRR 78 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~ 78 (211)
+..|.++=+.+-=. ++|||+| |+|+-+.-+|+|.......+-|+||.|+ ++.-|..|.+.... ..+++...+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY---~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY---LPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC---CCCccHHHHHhCCCCCCCCChHHHHH
Confidence 45566766663333 5999999 9999999999998776667899999986 55558888776322 245677888
Q ss_pred HHHhCCCCCcccc-----CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEec
Q psy2681 79 QLGMFGLPSYAHT-----IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--YQGGVILVSH 151 (211)
Q Consensus 79 ~l~~~gl~~~~~~-----~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~--~~~tiiivsH 151 (211)
+|.++||.+...+ +=-..||+||||||++||.++++|++++|||-|++||+.+...+++++++ .+.|||-|+|
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 9999998753221 01146999999999999999999999999999999999999999999998 4779999999
Q ss_pred ChHHHHhhCCeEEEEe
Q psy2681 152 DERLIRETDCELWALE 167 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~ 167 (211)
..... .+.++.+.+.
T Consensus 573 r~tl~-~~h~~~l~l~ 587 (604)
T COG4178 573 RPTLW-NFHSRQLELL 587 (604)
T ss_pred chhhH-HHHhhheeec
Confidence 77655 4445555443
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.3e-18 Score=166.68 Aligned_cols=104 Identities=27% Similarity=0.396 Sum_probs=88.1
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc---CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
+..++++.+||......+++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.|+++ +.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345688899997532234789999999999999999997 59999999999999999999999999865 579999
Q ss_pred EecChHHHHhhCCeEEEE------eCCceeeecCChHH
Q psy2681 149 VSHDERLIRETDCELWAL------EKKNIRKFNGDFDD 180 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~ 180 (211)
+|||++++. .||++++| ++|+++ +.|+.++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~ 922 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEE 922 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHH
Confidence 999999985 68999999 677776 4566554
No 391
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=2.6e-18 Score=151.69 Aligned_cols=167 Identities=23% Similarity=0.327 Sum_probs=133.8
Q ss_pred ccCeeeeecCC--CCcccccc-ccCcccCCcceEEecCC-------------eEEEEEeCCC-CCCCCCCCCHHHHHHhh
Q psy2681 6 LKLRIAVLQGL--RNPLSFIK-PKGELTPNKGELRKSPR-------------LRIGKFDQHS-GEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 6 ~~~~~~~i~~~--~~~sTLl~-i~G~~~p~~G~i~~~~~-------------~~ig~v~q~~-~~~l~~~~t~~e~~~~~ 68 (211)
+|+-+.+- |. ++.+.|+. |+|+.+|.+|+|..++. ..++|+|.+. ...+.+++++.+|+...
T Consensus 283 ~GEIvGIA-GV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~ 361 (501)
T COG3845 283 AGEIVGIA-GVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG 361 (501)
T ss_pred cCcEEEEE-ecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhh
Confidence 34444444 66 56889999 99999998999976542 3589999886 34577889999987521
Q ss_pred -cC---------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 69 -FN---------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 69 -~~---------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+. .. ...+.++++.|++...-...++.+||||.+||+-+||-+..+|++|++-.||.|||..+.+.
T Consensus 362 ~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred hccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHH
Confidence 11 11 13356789999986332334789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.+.|.+. +.+|+++|-|++++..+||||.+|.+|+++.
T Consensus 442 I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 442 IHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred HHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99988654 6799999999999999999999999999864
No 392
>KOG0066|consensus
Probab=99.77 E-value=1.7e-19 Score=157.57 Aligned_cols=114 Identities=25% Similarity=0.531 Sum_probs=103.6
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
.+++.+|.-+|++.....+|...+|||-|.||+|||||...|-+|.||||||+||..+..|+-+.|.-|.+|++|||||.
T Consensus 390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 34567899999987767779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEEEEeCCceeeecCChHHHHHHHHH
Q psy2681 154 RLIRETDCELWALEKKNIRKFNGDFDDYREKLLT 187 (211)
Q Consensus 154 ~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~ 187 (211)
.|+..+|..|+.|.+.++-.|.|+|.-+.+.+.+
T Consensus 470 gFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Q 503 (807)
T KOG0066|consen 470 GFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQ 503 (807)
T ss_pred chHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999998889998876554433
No 393
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=4.9e-18 Score=169.73 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=88.4
Q ss_pred HHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHh---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 78 RQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 78 ~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
++++.+|+... .+ +++.+|||||+||++||++|+ .+|+++||||||+|||+.++..+.++|+++ +.|||+||
T Consensus 791 ~~L~~vGL~~l~l~-q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLG-RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhc-CccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 47888999865 45 488999999999999999998 699999999999999999999999999765 56999999
Q ss_pred cChHHHHhhCCeEEEEe------CCceeeecCChHHHH
Q psy2681 151 HDERLIRETDCELWALE------KKNIRKFNGDFDDYR 182 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~------~g~i~~~~g~~~~~~ 182 (211)
|+++++ +.+|++++|. +|+++ ..|+.+++.
T Consensus 870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~ 905 (1809)
T PRK00635 870 HNMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELI 905 (1809)
T ss_pred CCHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHH
Confidence 999999 7999999995 55664 467777654
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=4.3e-18 Score=170.16 Aligned_cols=101 Identities=30% Similarity=0.406 Sum_probs=85.9
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.|..+||.....++++.+|||||+|||+||+||+.+| +++||||||+|||+..+..+.++|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4677899765223478999999999999999999999 899999999999999999999998865 56999999999
Q ss_pred HHHHhhCCeEEEEe------CCceeeecCChHHH
Q psy2681 154 RLIRETDCELWALE------KKNIRKFNGDFDDY 181 (211)
Q Consensus 154 ~~~~~~~~~v~~l~------~g~i~~~~g~~~~~ 181 (211)
+. .+.||++++|. +|+++ +.|+.+++
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv-~~G~~~ei 570 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVL-FNGSPREF 570 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEE-EecCHHHH
Confidence 94 58899999996 55664 56777766
No 395
>KOG0065|consensus
Probab=99.74 E-value=2.2e-18 Score=166.02 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=126.3
Q ss_pred Ccccccc-ccCccc--CCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hc---CCC----HHHH
Q psy2681 18 NPLSFIK-PKGELT--PNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LF---NLP----YEKS 76 (211)
Q Consensus 18 ~~sTLl~-i~G~~~--p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~---~~~----~~~~ 76 (211)
++|||++ ++|-.. ..+|+|..++ ++.+||+-|+.. ..+..||.|-+.. +. ..+ .+.+
T Consensus 829 GKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~Di--H~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 829 GKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDI--HSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred chHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccc--cCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 5899999 998752 1345554432 457999999864 3588999997642 11 122 1347
Q ss_pred HHHHHhCCCCCccccCCCCC----CChHHHHHHHHHHHHhcCC-CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 77 RRQLGMFGLPSYAHTIPIRD----LSGGQKARVALAELTLNNP-DILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~----LSgG~kqRv~iaral~~~p-~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
+++++.++|+++.+. -++. ||..||+|+.||--|+.+| .+|+|||||||||..+...+.++++++ |.||+.
T Consensus 907 e~Vi~lleL~~~~da-iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADA-LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhh-hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 889999999876664 4555 9999999999999999999 999999999999999999999999876 779999
Q ss_pred EecChH-HHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 149 VSHDER-LIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 149 vsHd~~-~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+-|.+. .+.+..|+++.|+.|+-..|-|+..+-.+
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 999974 33455699999999887778777654333
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=2.7e-18 Score=137.69 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=106.5
Q ss_pred eEEEEEeCCCCCCCCCCCCHHHHH-Hh------------hcCCCHHHHHHHHHhCCCCCccc--cCCCCCCChHHHHHHH
Q psy2681 42 LRIGKFDQHSGEHLFPDDTPCEYL-MK------------LFNLPYEKSRRQLGMFGLPSYAH--TIPIRDLSGGQKARVA 106 (211)
Q Consensus 42 ~~ig~v~q~~~~~l~~~~t~~e~~-~~------------~~~~~~~~~~~~l~~~gl~~~~~--~~~~~~LSgG~kqRv~ 106 (211)
..|+++||+|..-+.|..++...+ .. .+++.+.++-++|.++|+.+..+ ..++.+|--|+-|||.
T Consensus 89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVM 168 (330)
T COG4170 89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVM 168 (330)
T ss_pred cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeee
Confidence 358899999864455555443222 11 12344567788999999976432 2367999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 107 iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
||.|++.+|++||.|||||++++.++.+++.+|.+. +.||+++|||+..+.+.||++-||.-|+-++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 999999999999999999999999999999999765 4599999999999999999999999887654
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.73 E-value=4.7e-18 Score=148.92 Aligned_cols=93 Identities=29% Similarity=0.376 Sum_probs=83.5
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEec
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 151 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsH 151 (211)
...++.++++|....++ .+++|||||.||++||.|++.+++++++||||+.||+..+-...+.++++ +++||+|.|
T Consensus 193 ~~devve~l~L~nvl~r-~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 193 KFDEVVERLGLENVLDR-DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cHHHHHHHhcchhhhhh-hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 35678899999988775 79999999999999999999999999999999999999998888888876 469999999
Q ss_pred ChHHHHhhCCeEEEEeC
Q psy2681 152 DERLIRETDCELWALEK 168 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~~ 168 (211)
|+..+..++|-+.++..
T Consensus 272 DLavLD~lsD~vhI~YG 288 (591)
T COG1245 272 DLAVLDYLSDFVHILYG 288 (591)
T ss_pred hHHHHHHhhheeEEEec
Confidence 99999999888877753
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.66 E-value=2.3e-16 Score=128.70 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-CeEEEEecChHHHHhhCC-
Q psy2681 92 IPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNY----Q-GGVILVSHDERLIRETDC- 161 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~-~tiiivsHd~~~~~~~~~- 161 (211)
..+.+||+||||++.+++++ +.+|+++|+||||++||+.++..+.+.+.+. + .|+|++||++......++
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCc
Confidence 46789999999998877654 5899999999999999999999999998654 2 379999999887777765
Q ss_pred -eEEEEeCCc
Q psy2681 162 -ELWALEKKN 170 (211)
Q Consensus 162 -~v~~l~~g~ 170 (211)
++++|.+|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 677888876
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.64 E-value=1.2e-15 Score=121.24 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 97 LSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 97 LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
||+||+||++||++++ .+|+++++|||+++||+..+..+.+.+.++ +.++|++||+.+.+. .+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999998765 469999999998875 7899998865
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.63 E-value=1.4e-16 Score=128.56 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HHHh---cCCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKN---YQGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~---~~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
..+.+|+||+|++.++++ +.+|+++|+||||+|||+.....+.. .+.+ .+.++|++||+. .+...+++++.+++
T Consensus 88 ~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d~~~~l~~ 165 (200)
T cd03280 88 SLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-ELKAYAYKREGVEN 165 (200)
T ss_pred CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHhcCCCeEE
Confidence 568999999999999988 48999999999999999999887753 4443 367999999985 55678899999999
Q ss_pred Ccee
Q psy2681 169 KNIR 172 (211)
Q Consensus 169 g~i~ 172 (211)
|++.
T Consensus 166 g~l~ 169 (200)
T cd03280 166 ASME 169 (200)
T ss_pred EEEE
Confidence 9885
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=9.3e-16 Score=129.67 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
..|||||+||++||++++. +|+++++||||++||+..+..+.+.+.++ +.|+|++||++... ..+|+++.+.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence 3599999999999987654 99999999999999999999999999876 45999999999865 68999999887
Q ss_pred Cc
Q psy2681 169 KN 170 (211)
Q Consensus 169 g~ 170 (211)
++
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 64
No 402
>KOG0060|consensus
Probab=99.63 E-value=3.3e-15 Score=134.12 Aligned_cols=155 Identities=20% Similarity=0.174 Sum_probs=116.6
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCC---eEEEEEeCCCCCCCCCCCCHHHHHHhh--------cCCCHHHHH
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPR---LRIGKFDQHSGEHLFPDDTPCEYLMKL--------FNLPYEKSR 77 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~---~~ig~v~q~~~~~l~~~~t~~e~~~~~--------~~~~~~~~~ 77 (211)
+|+|-. ++|+|+| +.|+-+..+|++.+..+ ..+-|+||.|. ++.-|..+.+... ...+.+++.
T Consensus 465 LItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY---mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~ 541 (659)
T KOG0060|consen 465 LITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY---MTLGTLRDQVIYPLKAEDMDSKSASDEDIL 541 (659)
T ss_pred EEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCC---ccccchhheeeccCccccccccCCCHHHHH
Confidence 566664 5999999 99998889999987654 34899999985 3334666654321 112345566
Q ss_pred HHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE
Q psy2681 78 RQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVI 147 (211)
Q Consensus 78 ~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tii 147 (211)
..|+.++|.+...+ .=...||+||+||+++||.+.++|++-||||-|+++|.+....+.+.+++.+.|.|
T Consensus 542 r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~i 621 (659)
T KOG0060|consen 542 RILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFI 621 (659)
T ss_pred HHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEE
Confidence 66666555431110 01357999999999999999999999999999999999999999999999999999
Q ss_pred EEecChHHHHhhCCeEEEEeCCc
Q psy2681 148 LVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
-|+|...+- ++=+.++-|..++
T Consensus 622 SVgHRkSL~-kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 622 SVGHRKSLW-KFHDYVLRMDGRG 643 (659)
T ss_pred EeccHHHHH-hhhhEEEEecCCC
Confidence 999987765 4557777776543
No 403
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=3.3e-15 Score=146.38 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHh
Q psy2681 92 IPIRDLSGGQKARVALAELTLN----------NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRE 158 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~----------~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 158 (211)
++++.|||||++||+||+||+. +|++||+||||++||+.+...+.+.|..+ +.+|+||||++++...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 4789999999999999999986 79999999999999999999999998765 5699999999999999
Q ss_pred hCCeEEEEeCC
Q psy2681 159 TDCELWALEKK 169 (211)
Q Consensus 159 ~~~~v~~l~~g 169 (211)
++++|+|++.+
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 404
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.9e-16 Score=136.97 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=116.0
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCC-C--CC----CCCCCCHHHHHHhhcC-CCHHH
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHS-G--EH----LFPDDTPCEYLMKLFN-LPYEK 75 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~-~--~~----l~~~~t~~e~~~~~~~-~~~~~ 75 (211)
.|+-.=+|++.. ++|||.+ ++|+.+|++|+|..++.. |..+. . .. .|.+.-...-+....+ .+.+.
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p----V~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~ 423 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP----VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL 423 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc----CCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHH
Confidence 455566787775 5999999 999999999999887531 11000 0 00 0000000000111111 24566
Q ss_pred HHHHHHhCCCCCc---ccc-CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH----HHhcCCeEE
Q psy2681 76 SRRQLGMFGLPSY---AHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA----IKNYQGGVI 147 (211)
Q Consensus 76 ~~~~l~~~gl~~~---~~~-~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~----l~~~~~tii 147 (211)
+..+++++.+.+. .+. -..-.||.|||+|+++.-|++.+.+++++||=.+.-||.-++++... +++.|+||+
T Consensus 424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEE
Confidence 7777777766431 111 12357999999999999999999999999999999999999988765 467799999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecC
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNG 176 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g 176 (211)
.||||-... ..+||++.+.+|++++..|
T Consensus 504 aIsHDd~YF-~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 504 AISHDDHYF-IHADRLLEMRNGQLSELTG 531 (546)
T ss_pred EEecCchhh-hhHHHHHHHhcCceeeccc
Confidence 999997765 4679999999999987544
No 405
>KOG2355|consensus
Probab=99.59 E-value=8.8e-15 Score=117.11 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=121.0
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCC-----------eEEEEEeCCC--------CCCCCCCCCHHHHHHhhc
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPR-----------LRIGKFDQHS--------GEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~-----------~~ig~v~q~~--------~~~l~~~~t~~e~~~~~~ 69 (211)
++.|-+ ++|||+| ++|---.-.|.|...++ ....|+--+= ...+..+.++...+....
T Consensus 44 LlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~ 123 (291)
T KOG2355|consen 44 LLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVG 123 (291)
T ss_pred EEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhcc
Confidence 344665 5999999 89877666677764321 1233332110 001334666666666555
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCe
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGG 145 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~t 145 (211)
+...++-+++++.++++-.+ +...+|-|||+||+|++.|++.=++|+|||-|-.||+.++..+++++++- +.|
T Consensus 124 g~dp~Rre~LI~iLDIdl~W---RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 124 GDDPERREKLIDILDIDLRW---RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred CCChhHhhhhhhheeccceE---EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 55566677788888886432 45789999999999999999999999999999999999999999999853 679
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|++.||..+=++...+.++.+++|+++.
T Consensus 201 IVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 201 IVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEEeeeccchhhcchhEEEecCCeeee
Confidence 9999999999999999999999999864
No 406
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.57 E-value=8.4e-15 Score=135.09 Aligned_cols=75 Identities=25% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHhcC----CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTLNN----PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+.|||||+||++||++++.. |+++||||||+|||+.+...+.+.|+++ +.+||+|||++..+. .|+++++|.+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 57999999999999999985 6999999999999999999999999876 569999999999885 8999999987
Q ss_pred Cc
Q psy2681 169 KN 170 (211)
Q Consensus 169 g~ 170 (211)
+.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 53
No 407
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.56 E-value=1e-14 Score=134.15 Aligned_cols=89 Identities=27% Similarity=0.337 Sum_probs=73.3
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh----------cCCCeEEEeCCC-CCCCHHHHHHHHHHHHhc-CCe
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL----------NNPDILILDEPT-NNLDIESIDALAEAIKNY-QGG 145 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~----------~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~-~~t 145 (211)
..+...|... .++..|||||+||++||+|++ .+|+++|||||| ++||+.++..+.+.|.++ +.+
T Consensus 454 ~~~~~~g~~~----~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~ 529 (562)
T PHA02562 454 ETIKSRGRED----FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTN 529 (562)
T ss_pred hHHhcCCCCc----cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCe
Confidence 4455555432 256899999999999999987 599999999998 789999999999999887 459
Q ss_pred EEEEecChHHHHhhCCeEEEEeC-Cce
Q psy2681 146 VILVSHDERLIRETDCELWALEK-KNI 171 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~-g~i 171 (211)
||+|||+.+.. ..++++++|.+ |+.
T Consensus 530 iiiish~~~~~-~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 530 VFVISHKDHDP-QKFDRHLKMEKVGRF 555 (562)
T ss_pred EEEEECchhch-hhhhcEEEEEEECCe
Confidence 99999997766 46799998886 544
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.55 E-value=2.3e-14 Score=111.99 Aligned_cols=73 Identities=36% Similarity=0.364 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 95 RDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
..||+||+||++||++++. +|+++|+|||++|+|+.....+.+.+.++ +.++|++||+.+... .+|+++.|.
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 4599999999999999987 78999999999999999999998888654 369999999999986 468988875
Q ss_pred C
Q psy2681 168 K 168 (211)
Q Consensus 168 ~ 168 (211)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>PRK10869 recombination and repair protein; Provisional
Probab=99.52 E-value=4.9e-14 Score=129.53 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+.|||||+||++||++++. +|+++|||||++|||..+...+.+.|++. +.+||+|||++..+ .+||+.+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEec
Confidence 3589999999999999997 68999999999999999999999999876 36999999999877 68899999876
Q ss_pred C
Q psy2681 169 K 169 (211)
Q Consensus 169 g 169 (211)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 4
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.1e-13 Score=128.51 Aligned_cols=107 Identities=27% Similarity=0.343 Sum_probs=88.7
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
..+.|..+||.....-++...|||||.|||-||.-|..+. -++||||||+||-..-...|++.|.++ |.|||+|
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456778899865555688999999999999999998877 999999999999999999999998876 6799999
Q ss_pred ecChHHHHhhCCeEEEEe-----CCceeeecCChHHHHH
Q psy2681 150 SHDERLIRETDCELWALE-----KKNIRKFNGDFDDYRE 183 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~-----~g~i~~~~g~~~~~~~ 183 (211)
.|+++.+. .||.|+-|- +|+-+.+.|+++++.+
T Consensus 882 EHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 882 EHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999884 678877662 3344456899888764
No 411
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.49 E-value=1.3e-13 Score=134.95 Aligned_cols=77 Identities=27% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhc--------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhC
Q psy2681 92 IPIRDLSGGQKARVALAELTLN--------NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETD 160 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~--------~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 160 (211)
+++..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+ |.+|+||||..++..++.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4789999999999999999996 89999999999999999999999998765 579999999999999998
Q ss_pred CeEEEEeC
Q psy2681 161 CELWALEK 168 (211)
Q Consensus 161 ~~v~~l~~ 168 (211)
.++.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 88887765
No 412
>PRK03918 chromosome segregation protein; Provisional
Probab=99.49 E-value=1e-13 Score=133.67 Aligned_cols=76 Identities=38% Similarity=0.499 Sum_probs=65.9
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++..|||||++ |++||++++.+|+++|+||||++||+.++..+.++|..+ +.+||+||||.++. ..|++
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~ 862 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADY 862 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCe
Confidence 367899999999 555666888999999999999999999999999998765 45899999999865 68999
Q ss_pred EEEEeC
Q psy2681 163 LWALEK 168 (211)
Q Consensus 163 v~~l~~ 168 (211)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999873
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1e-13 Score=116.88 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC---C
Q psy2681 94 IRDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD---C 161 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~---~ 161 (211)
.+.+|+||+|++.||++++ .+|+++|+||||++||+..+..+.+.+.+++ .+++++|+...+..+| +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence 4568999999999999985 7999999999999999999999999998876 5677777777777776 6
Q ss_pred eEEEEeCCce
Q psy2681 162 ELWALEKKNI 171 (211)
Q Consensus 162 ~v~~l~~g~i 171 (211)
+++.+++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 7888988875
No 414
>PRK01156 chromosome segregation protein; Provisional
Probab=99.47 E-value=2e-13 Score=132.09 Aligned_cols=78 Identities=32% Similarity=0.474 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHH------HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC--CeEEEEecChHHHHhhC
Q psy2681 93 PIRDLSGGQKARVAL------AELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ--GGVILVSHDERLIRETD 160 (211)
Q Consensus 93 ~~~~LSgG~kqRv~i------aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~--~tiiivsHd~~~~~~~~ 160 (211)
++..|||||++|++| |++++.+|++++|||||++||+..+..+.+++.. .+ .+||+||||.+++ .+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence 578999999999975 5899999999999999999999999999888763 22 3899999999987 589
Q ss_pred CeEEEEe-CCce
Q psy2681 161 CELWALE-KKNI 171 (211)
Q Consensus 161 ~~v~~l~-~g~i 171 (211)
++++.+. .|+.
T Consensus 877 d~ii~~~~~~~~ 888 (895)
T PRK01156 877 DVAYEVKKSSGS 888 (895)
T ss_pred CeEEEEEecCCe
Confidence 9999886 3443
No 415
>KOG0064|consensus
Probab=99.47 E-value=9e-14 Score=124.01 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=107.8
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCC-------CCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGE-------HLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~-------~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
+|.|=+ ++|+|++ +.|+-+...|...+..+.++-|+||.|+. +..-..++.++.. .+..+++...+|.
T Consensus 512 LItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~--kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 512 LITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR--KGYTDQDLEAILD 589 (728)
T ss_pred EEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHh--cCCCHHHHHHHHH
Confidence 344555 4999999 89998889999988878889999999861 1111223333332 2334455555555
Q ss_pred hCCC----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEec
Q psy2681 82 MFGL----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSH 151 (211)
Q Consensus 82 ~~gl----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsH 151 (211)
.+.| +...+.+ ..||||+|||+++||.+.++|+.-+|||-||+..++....+.+..+..+.+.|-|||
T Consensus 590 ~v~L~~i~qr~~g~da~~dWk--d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsith 667 (728)
T KOG0064|consen 590 IVHLEHILQREGGWDAVRDWK--DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITH 667 (728)
T ss_pred HhhHHHHHHhccChhhhccHH--hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeec
Confidence 5443 3333321 479999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHH
Q psy2681 152 DERLIR 157 (211)
Q Consensus 152 d~~~~~ 157 (211)
......
T Consensus 668 rpslwk 673 (728)
T KOG0064|consen 668 RPSLWK 673 (728)
T ss_pred CccHHH
Confidence 987764
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.2e-13 Score=137.97 Aligned_cols=69 Identities=39% Similarity=0.484 Sum_probs=62.2
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--------CCeEEEEecChHHHHh
Q psy2681 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--------QGGVILVSHDERLIRE 158 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--------~~tiiivsHd~~~~~~ 158 (211)
..+.||||||| |++||+|++.+|++|+|||||+|||+.+...+.+.|..+ +.+||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 34789999999 999999999999999999999999999999888877653 4699999999999998
Q ss_pred hCC
Q psy2681 159 TDC 161 (211)
Q Consensus 159 ~~~ 161 (211)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 863
No 417
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.46 E-value=3.5e-13 Score=117.49 Aligned_cols=162 Identities=21% Similarity=0.227 Sum_probs=117.8
Q ss_pred cCeeeeecCCC--Ccccccc-ccCc--------ccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGE--------LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 75 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~--------~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~ 75 (211)
|.+..+. |-- ++||+++ |.|. ++|++|.|......--+.+|....+. +...|+.+.+....+ +...
T Consensus 409 GdvvaVv-GqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~-f~~~tilehl~s~tG-D~~~ 485 (593)
T COG2401 409 GDVVAVV-GQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPE-FGEVTILEHLRSKTG-DLNA 485 (593)
T ss_pred CCeEEEE-ecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccc-cCchhHHHHHhhccC-chhH
Confidence 4444455 442 5899999 8653 47888888754333233455543332 334566665543322 2344
Q ss_pred HHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEe
Q psy2681 76 SRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVS 150 (211)
Q Consensus 76 ~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~~tiiivs 150 (211)
+.++|.+.|+.+ .+.++++++||.|||.|+.||++++..|++++.||-.++||+.+...+..-|.+ .+.|++++|
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvT 565 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 678999999975 444567899999999999999999999999999999999999998887776654 577999999
Q ss_pred cChHHHHhh-CCeEEEEeCCce
Q psy2681 151 HDERLIRET-DCELWALEKKNI 171 (211)
Q Consensus 151 Hd~~~~~~~-~~~v~~l~~g~i 171 (211)
|+.++...+ -|.++.+.-|+.
T Consensus 566 hrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 566 HRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred cCHHHHhccCCceeEEeecccc
Confidence 999999988 577776666654
No 418
>KOG0063|consensus
Probab=99.46 E-value=1.1e-13 Score=120.80 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=111.5
Q ss_pred Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-c--CCCHHHHHHHHHhCCCCCccccCC
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F--NLPYEKSRRQLGMFGLPSYAHTIP 93 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~--~~~~~~~~~~l~~~gl~~~~~~~~ 93 (211)
.+|||++ ++|.++|++|.=. +...++|=||...+. ..-++.+.+... + ......+.+.++.+.++...+. -
T Consensus 379 gkTTfi~mlag~~~pd~~~e~--p~lnVSykpqkispK--~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dq-e 453 (592)
T KOG0063|consen 379 GKTTFIRMLAGRLKPDEGGEI--PVLNVSYKPQKISPK--REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQ-E 453 (592)
T ss_pred chhHHHHHHhcCCCCCccCcc--cccceeccccccCcc--ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhH-H
Confidence 5999999 9999999887321 234688888875421 233555555321 1 1234456677788888776665 6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+..||||++|||++|.+|=..+++++.|||.+.||.+.+..-...++ ..++|-.+|.||.-.+...+||+++.+.-
T Consensus 454 vq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 454 VQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred hhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 89999999999999999999999999999999999998765544444 44779999999999999999999987643
No 419
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=1.8e-13 Score=112.34 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=74.2
Q ss_pred HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHHHHHH-HHHHh-cCCeEEEE
Q psy2681 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEP---TNNLDIESIDALA-EAIKN-YQGGVILV 149 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~~~~l~-~~l~~-~~~tiiiv 149 (211)
.+++.++++.+. ..+.+|.|+++++.+++++ +.+|+++||||| |++||+.+..+.. +.+.+ .+.++|++
T Consensus 74 ~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlis 149 (222)
T cd03285 74 DCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFA 149 (222)
T ss_pred ceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 456677777643 2568999999999999999 899999999999 9999999876544 56654 36799999
Q ss_pred ecChHHHHhhCCeEEEEeCCcee
Q psy2681 150 SHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
||+ ..+.++|+++..+.+|++.
T Consensus 150 TH~-~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 150 THF-HELTALADEVPNVKNLHVT 171 (222)
T ss_pred ech-HHHHHHhhcCCCeEEEEEE
Confidence 996 6677899999888888764
No 420
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.40 E-value=6.1e-13 Score=130.90 Aligned_cols=74 Identities=30% Similarity=0.439 Sum_probs=65.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
.++..|||||++|++||++++ .+|+++||||||++||+.++..+.++|... +.++|+|||++.++ ..||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhHee
Confidence 367899999999999999985 677999999999999999999999999876 35899999999987 56899875
Q ss_pred E
Q psy2681 166 L 166 (211)
Q Consensus 166 l 166 (211)
+
T Consensus 1164 ~ 1164 (1179)
T TIGR02168 1164 V 1164 (1179)
T ss_pred e
Confidence 4
No 421
>KOG0065|consensus
Probab=99.39 E-value=8.2e-13 Score=128.08 Aligned_cols=169 Identities=21% Similarity=0.298 Sum_probs=125.3
Q ss_pred eeeeecCCC--Ccccccc-ccCcccC---CcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHH---hhc--
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTP---NKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLM---KLF-- 69 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p---~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~---~~~-- 69 (211)
++-++.|.- +.|||++ ++|...- ..|+|+.++ ++.++|.+|+.. .++.+||.|-+. ...
T Consensus 142 ~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~Dv--H~p~lTVreTldFa~rck~~ 219 (1391)
T KOG0065|consen 142 EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDV--HFPELTVRETLDFAARCKGP 219 (1391)
T ss_pred ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccc--ccceeEEeehhhHHHhccCC
Confidence 455665663 4899999 9876633 244676543 467899999754 688899877553 211
Q ss_pred -----CCCHHH-----HHHHHHhCCCCCcccc----CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 70 -----NLPYEK-----SRRQLGMFGLPSYAHT----IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 70 -----~~~~~~-----~~~~l~~~gl~~~~~~----~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
+..+.+ .+.+++.+||+.-.+. ......|||||+||.+|-+++.+++++++||+|+|||..+.-++
T Consensus 220 ~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~i 299 (1391)
T KOG0065|consen 220 GSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQI 299 (1391)
T ss_pred ccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHH
Confidence 122222 3467999999864443 23467999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 136 AEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.+.|++. +.|.+++-|.. ..+-...|+|++|.+|.++ |.|+.++
T Consensus 300 ik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i-y~Gp~d~ 348 (1391)
T KOG0065|consen 300 IKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI-YQGPRDE 348 (1391)
T ss_pred HHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE-EeccHHH
Confidence 9998865 45777766664 5566778999999999996 5677654
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.37 E-value=1.7e-12 Score=113.82 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC--C
Q psy2681 93 PIRDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD--C 161 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~--~ 161 (211)
+...+|.||+|++.||++++ .+|+++|+|||+++||+..+..+.+.+.+.+..++++||+.+.+...+ +
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 34689999999999999986 799999999999999999999999999876678999999988776653 4
Q ss_pred eEEEEeCCce
Q psy2681 162 ELWALEKKNI 171 (211)
Q Consensus 162 ~v~~l~~g~i 171 (211)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 7889999876
No 423
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.31 E-value=4.6e-12 Score=124.95 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=66.7
Q ss_pred CCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 93 PIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++ +.++|++||+...+ ..||+++.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~~ 1149 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIGV 1149 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEeE
Confidence 567899999999999999985 78999999999999999999999999886 35899999999766 688999866
Q ss_pred eC
Q psy2681 167 EK 168 (211)
Q Consensus 167 ~~ 168 (211)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 53
No 424
>PRK02224 chromosome segregation protein; Provisional
Probab=99.26 E-value=1.4e-11 Score=119.08 Aligned_cols=76 Identities=36% Similarity=0.538 Sum_probs=65.1
Q ss_pred CCCCCChHHHH------HHHHHHHHhcC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHhc---CC-eEEEEecChHHH
Q psy2681 93 PIRDLSGGQKA------RVALAELTLNN-----P-DILILDEPTNNLDIESIDALAEAIKNY---QG-GVILVSHDERLI 156 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral~~~-----p-~lllLDEPt~gLD~~~~~~l~~~l~~~---~~-tiiivsHd~~~~ 156 (211)
++..||||||+ |++++++++.+ | +++|+||||++||+..+..+.++|..+ +. +||+||||..++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999998863 2 679999999999999999999988765 33 799999999998
Q ss_pred HhhCCeEEEEeCC
Q psy2681 157 RETDCELWALEKK 169 (211)
Q Consensus 157 ~~~~~~v~~l~~g 169 (211)
. .+|+++.+...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 5 68999988644
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.18 E-value=2.4e-10 Score=106.61 Aligned_cols=104 Identities=26% Similarity=0.305 Sum_probs=83.4
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.|-.+||...-..|....|||||.||+-||.-+=. --=+++||||+.||-+.--.++.+.|+++ |.|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 45567887654456789999999999999999854 34689999999999999999888887654 77999999999
Q ss_pred HHHHhhCCeEEEEe-----CCceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWALE-----KKNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l~-----~g~i~~~~g~~~~~~~ 183 (211)
+.+. .+|.++-|- +|+-+.+.|+++++.+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 9885 579988763 3344457899988764
No 426
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=7.9e-11 Score=103.37 Aligned_cols=63 Identities=25% Similarity=0.228 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHHhc---------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHH
Q psy2681 95 RDLSGGQKARVALAELTLN---------NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 157 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~---------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 157 (211)
..+|.||++++.||.+++. +|+++|||||+++||+..+..+.+.|.+.+.+++++||+.+.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 4699999999999999999 99999999999999999999999999876679999999987764
No 427
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.16 E-value=9.7e-11 Score=94.55 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=59.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HH---HhcCCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AI---KNYQGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l---~~~~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
..+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+.. ++ .+.+.++|++||+.+.+. .++++..+.+
T Consensus 88 ~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~ 165 (202)
T cd03243 88 GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKN 165 (202)
T ss_pred CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEE
Confidence 45678887776 666678889999999999999999988776543 33 334679999999988876 5567777777
Q ss_pred Ccee
Q psy2681 169 KNIR 172 (211)
Q Consensus 169 g~i~ 172 (211)
+++.
T Consensus 166 ~~~~ 169 (202)
T cd03243 166 LHME 169 (202)
T ss_pred EEEE
Confidence 7664
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.13 E-value=4.1e-11 Score=95.57 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=53.7
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHH---h-cCCeEEEEecChHHH
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK---N-YQGGVILVSHDERLI 156 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~---~-~~~tiiivsHd~~~~ 156 (211)
.++..+...+ ..+++|+|++|...++. .+.+|+++|+|||++|+|+.....+. .+++ + .+.++|++||+.+.
T Consensus 48 ~~~~~d~~~~-~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l- 124 (185)
T smart00534 48 RIGASDSLAQ-GLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL- 124 (185)
T ss_pred EeCCCCchhc-cccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-
Confidence 3444444443 67889999887444433 24599999999999999999766653 3333 3 25699999999964
Q ss_pred HhhCCe
Q psy2681 157 RETDCE 162 (211)
Q Consensus 157 ~~~~~~ 162 (211)
.+.++.
T Consensus 125 ~~~~~~ 130 (185)
T smart00534 125 TKLADE 130 (185)
T ss_pred HHHhhc
Confidence 456553
No 429
>KOG0063|consensus
Probab=99.12 E-value=2.1e-11 Score=106.80 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=79.4
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecC
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 152 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd 152 (211)
..++++.+.|....++ -+.+||||+-||.+||.+.+++.++.++|||.+.||+..+......|+.+ ..-||+|.||
T Consensus 194 ~~~~~~~~~L~~~~~r-e~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDR-EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred HHHHHHHHHHhhHHHh-hhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 3456777777766654 68999999999999999999999999999999999999998888888776 4579999999
Q ss_pred hHHHHhhCCeEEEEeC
Q psy2681 153 ERLIRETDCELWALEK 168 (211)
Q Consensus 153 ~~~~~~~~~~v~~l~~ 168 (211)
+..+....|-+.++-.
T Consensus 273 LsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 273 LSVLDYLSDFICCLYG 288 (592)
T ss_pred chHHHhhhcceeEEec
Confidence 9999999888877753
No 430
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.11 E-value=2.3e-10 Score=92.40 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred eeeeecCCC--Ccccccc-ccCcccC-CcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC---CHHHHHHHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTP-NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRRQLG 81 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p-~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~---~~~~~~~~l~ 81 (211)
++-+|.|-+ ++|||+| ++|.... ..|.-... -++++|. ..+++.+++.+++...... ...++.++++
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a----~~~~~q~--~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~ 99 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA----SSFELPP--VKIFTSIRVSDDLRDGISYFYAELRRLKEIVE 99 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec----CccCccc--ceEEEeccchhccccccChHHHHHHHHHHHHH
Confidence 444566775 5999999 8876642 23321111 1355663 2467777777765321111 0122333444
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHH---hcCCeEEEEecChHHHH
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~---~~~~tiiivsHd~~~~~ 157 (211)
.+++ .+|+++|+||||+|+|+.....+. .+++ +.+.++|++||+++.+.
T Consensus 100 ~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 100 KAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152 (199)
T ss_pred hccC---------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence 4331 699999999999999999877553 3443 34679999999999987
Q ss_pred hh
Q psy2681 158 ET 159 (211)
Q Consensus 158 ~~ 159 (211)
..
T Consensus 153 ~~ 154 (199)
T cd03283 153 LL 154 (199)
T ss_pred hh
Confidence 65
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=1.9e-10 Score=93.23 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=60.6
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH----HHHHHHhcCCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~----l~~~l~~~~~tiiivsHd~ 153 (211)
+++..++..+...+ ..+.+|+|++|+ ..+.+++.+|+++|+|||++|+|+..... +.+.+.+.+.++|++||+.
T Consensus 74 ~I~~~~~~~d~~~~-~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 74 RLLSRLSNDDSMER-NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred heeEecCCccccch-hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 34555666554443 678999999976 45566889999999999999999976443 3344444578999999999
Q ss_pred HHHHhhC
Q psy2681 154 RLIRETD 160 (211)
Q Consensus 154 ~~~~~~~ 160 (211)
+++...+
T Consensus 152 ~l~~~~~ 158 (204)
T cd03282 152 DIAAILG 158 (204)
T ss_pred HHHHHhh
Confidence 9987665
No 432
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.08 E-value=6.9e-10 Score=90.55 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=81.8
Q ss_pred eeeeecCCC--Ccccccc-cc--CcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhC
Q psy2681 9 RIAVLQGLR--NPLSFIK-PK--GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 83 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~--G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~ 83 (211)
|.-+|.|-+ ++|||+| +. +.+ +..|.........++|+.|... .+....++.+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~si~~-------------------- 87 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRESVSS-------------------- 87 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccChhh--------------------
Confidence 667777887 5999999 75 333 6677776666667888877532 2222222211
Q ss_pred CCCCccccCCCCCCC--hHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhc------CCeEEEEecChH
Q psy2681 84 GLPSYAHTIPIRDLS--GGQKARVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNY------QGGVILVSHDER 154 (211)
Q Consensus 84 gl~~~~~~~~~~~LS--gG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~------~~tiiivsHd~~ 154 (211)
.+| .-+-||++++++++.+|.++|+|||++|+|+.... .+...++++ +.++|++||+.+
T Consensus 88 ------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 88 ------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred ------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 122 34668999999999999999999999999996533 333444432 138999999999
Q ss_pred HHHhhC
Q psy2681 155 LIRETD 160 (211)
Q Consensus 155 ~~~~~~ 160 (211)
.+....
T Consensus 156 l~~~~~ 161 (213)
T cd03281 156 LFNRSL 161 (213)
T ss_pred HHHhhh
Confidence 987653
No 433
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.07 E-value=5.6e-10 Score=108.39 Aligned_cols=76 Identities=33% Similarity=0.466 Sum_probs=63.8
Q ss_pred CCCCCCChHHHHHHHHHHHH------hcC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhC
Q psy2681 92 IPIRDLSGGQKARVALAELT------LNN--PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETD 160 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral------~~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 160 (211)
+++..||||++-.++||-+| ..+ -+++||||||.+||+.+...+.+.|.+. +.+|+||||+.++...+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~- 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERA- 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhC-
Confidence 58899999999887777666 356 7999999999999999999999998765 46999999999998655
Q ss_pred CeEEEEeC
Q psy2681 161 CELWALEK 168 (211)
Q Consensus 161 ~~v~~l~~ 168 (211)
+.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 66666654
No 434
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.04 E-value=3.7e-10 Score=113.23 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=56.1
Q ss_pred CCCCCChHHHHHHH----HHHH--------HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 93 PIRDLSGGQKARVA----LAEL--------TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 93 ~~~~LSgG~kqRv~----iara--------l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
+++.||||||||++ +|++ +..+|++++|||||+|||+.++..+++++.+++.++||+||.+.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchh
Confidence 56899999999996 5655 45899999999999999999999999999999999999999864
No 435
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.00 E-value=5.9e-09 Score=84.91 Aligned_cols=86 Identities=29% Similarity=0.413 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeE
Q psy2681 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGV 146 (211)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~ti 146 (211)
...+.+.+..+++.. ..||||||..++||.-| ..+.++++||||.++||...+..+.++|++.. .-+
T Consensus 120 ~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 120 LKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445666777766642 38999999999998665 36789999999999999999999999999885 589
Q ss_pred EEEecChHHHHhhCCeEEEE
Q psy2681 147 ILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l 166 (211)
|++||+....... ++.+.+
T Consensus 193 ii~Th~~~~~~~a-~~~~~v 211 (220)
T PF02463_consen 193 IITTHNPEMFEDA-DKLIGV 211 (220)
T ss_dssp EEE-S-HHHHTT--SEEEEE
T ss_pred ccccccccccccc-cccccc
Confidence 9999998888654 676644
No 436
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.00 E-value=1.4e-09 Score=88.97 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHH-HHHHHHHHhc-CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 101 QKARVALAELT--LNNPDILILDEP---TNNLDIESI-DALAEAIKNY-QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 101 ~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~~-~~l~~~l~~~-~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+..+..+++++ +.+|+++|+||| |+++|..+. ..+.+.+.+. +.++|++||+.++ .++++++..+.++.+
T Consensus 94 ~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~~v~~~~~ 170 (216)
T cd03284 94 MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKLPRVKNFHV 170 (216)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCCCeEEEEE
Confidence 33344455555 579999999999 999998763 5567777776 7899999999754 456666544555544
No 437
>PRK13695 putative NTPase; Provisional
Probab=98.96 E-value=1.8e-09 Score=85.08 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDE--PTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+...+|++++-+..+++..+.+|+++++|| |+.++|+...+.+.+.+ +.+.++|+++|+. .+...++++..+.+|+
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhccCCcE
Confidence 456899999999999999999999999999 77788888777788887 6688999999995 5556779999999999
Q ss_pred eeeec-CChHHHHHHHHHHh
Q psy2681 171 IRKFN-GDFDDYREKLLTSL 189 (211)
Q Consensus 171 i~~~~-g~~~~~~~~~~~~~ 189 (211)
++... .+.+.+.+..++.+
T Consensus 153 i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 153 VYELTPENRDSLPFEILNRL 172 (174)
T ss_pred EEEEcchhhhhHHHHHHHHH
Confidence 87653 34455555555443
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.95 E-value=5.8e-10 Score=106.16 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHH---hcCCeEEEEecChHHHH
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~---~~~~tiiivsHd~~~~~ 157 (211)
.++.||+||++++.|++++ .+|.++|+|||++|+|+.....+. .++. +.+.++|++||+.++..
T Consensus 382 ~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 382 NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 4678999999999998876 899999999999999999988774 3443 34679999999987643
No 439
>PRK14079 recF recombination protein F; Provisional
Probab=98.95 E-value=2.4e-09 Score=93.53 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEE
Q psy2681 95 RDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
..+|+||++++.+|..|+ .+|+++|||||+++||...+.++.+.|.....++|-.|+ ....+++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence 468999999999999999 899999999999999999999999999765544444343 3456789999
Q ss_pred EeCCcee
Q psy2681 166 LEKKNIR 172 (211)
Q Consensus 166 l~~g~i~ 172 (211)
+.+|++.
T Consensus 338 ~~~~~~~ 344 (349)
T PRK14079 338 IEAGVFT 344 (349)
T ss_pred EeccEec
Confidence 9888764
No 440
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.87 E-value=4.1e-09 Score=88.93 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=72.7
Q ss_pred eeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCC
Q psy2681 10 IAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 87 (211)
Q Consensus 10 ~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~ 87 (211)
+.+++.-. ++|||++ ++|.++|++|++...++ .+..+. ...+........+... +|.
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~-~v~~~d-----------~~~ei~~~~~~~~q~~-------~~~-- 172 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTGISQLGLRGK-KVGIVD-----------ERSEIAGCVNGVPQHD-------VGI-- 172 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCCCceEEECCE-Eeecch-----------hHHHHHHHhccccccc-------ccc--
Confidence 34443332 5999999 99999999999987643 232110 0011111000000000 000
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH--H---------
Q psy2681 88 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL--I--------- 156 (211)
Q Consensus 88 ~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~--~--------- 156 (211)
+...|.+=.|.....+.+.+.+|+++++|||++. +....+.+.+. .+.++|++||+... +
T Consensus 173 -----r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l 243 (270)
T TIGR02858 173 -----RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVFKEL 243 (270)
T ss_pred -----cccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHHHHH
Confidence 1111222122222234444479999999999853 33444444443 37799999997655 4
Q ss_pred --HhhCCeEEEEeCCc
Q psy2681 157 --RETDCELWALEKKN 170 (211)
Q Consensus 157 --~~~~~~v~~l~~g~ 170 (211)
..+++++++|.+++
T Consensus 244 ~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 244 IENEAFERYVVLSRRK 259 (270)
T ss_pred HhcCceEEEEEEecCC
Confidence 36689999998765
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.82 E-value=7.7e-09 Score=98.75 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HH---HhcCCeEEEEecChHHHH
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AI---KNYQGGVILVSHDERLIR 157 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l---~~~~~tiiivsHd~~~~~ 157 (211)
.+|-+..... .++.+|+||+|++.|++++ .+|.++|+|||++|+|+.....+.. ++ .+.+.++|++||+.+...
T Consensus 377 ~ig~~~si~~-~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 377 DIGDEQSIEQ-SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA 454 (782)
T ss_pred ecCCccchhh-chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH
Confidence 3444333333 5788999999999999988 8999999999999999988776643 33 344679999999998887
Q ss_pred hhCCeEEE
Q psy2681 158 ETDCELWA 165 (211)
Q Consensus 158 ~~~~~v~~ 165 (211)
..+++..+
T Consensus 455 ~~~~~~~v 462 (782)
T PRK00409 455 LMYNREGV 462 (782)
T ss_pred HHhcCCCe
Confidence 66655443
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.81 E-value=1.5e-08 Score=81.90 Aligned_cols=64 Identities=33% Similarity=0.508 Sum_probs=52.2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHH
Q psy2681 93 PIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLI 156 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 156 (211)
+...+|.|++|.+.|+.++...+ .++++|||-++|.|..+..+.++|.+. +.-+|++||.+.++
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45677999999999988888766 899999999999999999999999865 35899999998764
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.70 E-value=4e-08 Score=77.61 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=59.6
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCC---HHHHHHHHHHHH---hcCCeEEEEecChHH-----
Q psy2681 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIK---NYQGGVILVSHDERL----- 155 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD---~~~~~~l~~~l~---~~~~tiiivsHd~~~----- 155 (211)
++..+|+|++| +.....+...+|+++++|||++.+| ......+.+++. +.+.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 56789999998 5555555678999999999999999 666666665554 457799999998765
Q ss_pred ----HHhhCCeEEEEe
Q psy2681 156 ----IRETDCELWALE 167 (211)
Q Consensus 156 ----~~~~~~~v~~l~ 167 (211)
+..++|.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 678888888876
No 444
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.64 E-value=5.8e-08 Score=68.60 Aligned_cols=49 Identities=35% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCCCChHHHHH-HHHHHH--H----hc------CCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 93 PIRDLSGGQKAR-VALAEL--T----LN------NPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 93 ~~~~LSgG~kqR-v~iara--l----~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
..+.+||||||. +.++.+ + .. .|.+++|||||++||+.....+++++++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 678999999954 333333 2 22 4799999999999999999999999864
No 445
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.46 E-value=2.1e-07 Score=75.52 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCCCChH--HHHHHHHHHHHhcCCCeEEEeCCC-----CCCCHHHHHHHHHHHHhc
Q psy2681 94 IRDLSGG--QKARVALAELTLNNPDILILDEPT-----NNLDIESIDALAEAIKNY 142 (211)
Q Consensus 94 ~~~LSgG--~kqRv~iaral~~~p~lllLDEPt-----~gLD~~~~~~l~~~l~~~ 142 (211)
++..||+ +++++.||++++.+|+++++|||| ++||+.++..+.+.++++
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3445554 889999999999999999999999 999999999999999875
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=9.8e-07 Score=73.68 Aligned_cols=75 Identities=19% Similarity=0.091 Sum_probs=62.1
Q ss_pred CCCChHH--------HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH--HHHHHHHhcCCeEEEEecChHHHHhhCCeEE
Q psy2681 95 RDLSGGQ--------KARVALAELTLNNPDILILDEPTNNLDIESID--ALAEAIKNYQGGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 95 ~~LSgG~--------kqRv~iaral~~~p~lllLDEPt~gLD~~~~~--~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~ 164 (211)
..+|||+ +||+++||++..++++.+| ||+.+|..+.. -+.+.++....|+|++||.+.....+ +.|.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~-paI~ 204 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIF-PAID 204 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCC-CeEE
Confidence 3479999 9999999999999999999 99999963332 34566665567999999999998654 8999
Q ss_pred EEeCCcee
Q psy2681 165 ALEKKNIR 172 (211)
Q Consensus 165 ~l~~g~i~ 172 (211)
+|..|.+.
T Consensus 205 vl~s~sr~ 212 (249)
T cd01128 205 ILKSGTRK 212 (249)
T ss_pred EcCCCCcc
Confidence 99999874
No 447
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.18 E-value=4.7e-06 Score=78.53 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=50.1
Q ss_pred CCCCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHH-HHHhcCCeEEEEecChHHHHh
Q psy2681 93 PIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAE-AIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~tiiivsHd~~~~~~ 158 (211)
++..|||||+|-++||..++. ..++ ++||||+.||...+..+.. ++.....-||+.|||-++-..
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~~ 619 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDEK 619 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCHH
Confidence 567899999999766655432 4556 5699999999999999874 776666678889999766543
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.05 E-value=1.2e-05 Score=77.65 Aligned_cols=61 Identities=23% Similarity=0.171 Sum_probs=52.6
Q ss_pred hcCCCeEEEeCCCCCC-CHHHHHHHHHHHHh---cCCeEEEEecChHHHH---------hhCCeEEEEeCCcee
Q psy2681 112 LNNPDILILDEPTNNL-DIESIDALAEAIKN---YQGGVILVSHDERLIR---------ETDCELWALEKKNIR 172 (211)
Q Consensus 112 ~~~p~lllLDEPt~gL-D~~~~~~l~~~l~~---~~~tiiivsHd~~~~~---------~~~~~v~~l~~g~i~ 172 (211)
..+|+++++|||+.+| |+.....+.+.++. .+.+++++||+++.+. ..|+.+++|.++++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 5799999999999999 68988888888764 4679999999999886 578888999998764
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.00 E-value=2.2e-05 Score=64.30 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCCh--HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH----HHhc-CCeEEEEecChHHHHhhC
Q psy2681 96 DLSG--GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA----IKNY-QGGVILVSHDERLIRETD 160 (211)
Q Consensus 96 ~LSg--G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~----l~~~-~~tiiivsHd~~~~~~~~ 160 (211)
.+|. .+-+++.-+...+.+|.++|+|||++|+++.....+... +.+. +.++|++||+.+++...+
T Consensus 89 ~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 89 GESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 3454 344455444455689999999999999999876655444 3333 678999999999988765
No 450
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.97 E-value=4.5e-05 Score=65.17 Aligned_cols=70 Identities=36% Similarity=0.522 Sum_probs=61.3
Q ss_pred CCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEEEecChHHHHhhCCeEE
Q psy2681 95 RDLSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERLIRETDCELW 164 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--tiiivsHd~~~~~~~~~~v~ 164 (211)
.+||-|+-+-+++|.+|.. .|.++++|||-++|-|.....+..++.+..+ -||++||..+++..+--+-+
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v 342 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSV 342 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccce
Confidence 4899999999999999985 7999999999999999999999999987643 89999999999876644333
No 451
>PF13175 AAA_15: AAA ATPase domain
Probab=97.92 E-value=2.7e-05 Score=68.59 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=53.0
Q ss_pred CCCCCCChHHHHHHHHHHHHh------cC-CC---eEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHH
Q psy2681 92 IPIRDLSGGQKARVALAELTL------NN-PD---ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERL 155 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~------~~-p~---lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 155 (211)
-++..+|.|.++.+.|+..+. .+ +. ++++|||-++|.|..+..+.+.|.++ +..||++||.+.+
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 367899999999888776652 22 22 99999999999999999999999875 3589999999865
No 452
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.81 E-value=7.8e-05 Score=61.26 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=65.2
Q ss_pred eecCCC--Ccccccc-ccC-cccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCC
Q psy2681 12 VLQGLR--NPLSFIK-PKG-ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 87 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G-~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~ 87 (211)
+|.|-+ ++||+++ +++ .+.+..|...+.....++|+.|- +.. ++-.+
T Consensus 35 ~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i-----~~~------------------------~~~~d 85 (222)
T cd03287 35 IITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV-----LTR------------------------MGASD 85 (222)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE-----EEE------------------------ecCcc
Confidence 344543 5888888 777 66777777665544445544331 111 11111
Q ss_pred ccccCCCCCCCh--HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH----HHHHHHHhc-CCeEEEEecChHHHH
Q psy2681 88 YAHTIPIRDLSG--GQKARVALAELTLNNPDILILDEPTNNLDIESID----ALAEAIKNY-QGGVILVSHDERLIR 157 (211)
Q Consensus 88 ~~~~~~~~~LSg--G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~----~l~~~l~~~-~~tiiivsHd~~~~~ 157 (211)
. ....+|- .+-+++.-+..-+.+|.++|+|||.+|.|+.... .+.+.+.+. +.++|++||+.+...
T Consensus 86 ~----~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 86 S----IQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred c----cccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 0 1112332 2333333333446789999999997777754433 345555555 669999999998764
No 453
>KOG0962|consensus
Probab=97.80 E-value=3.7e-05 Score=75.65 Aligned_cols=65 Identities=43% Similarity=0.573 Sum_probs=53.7
Q ss_pred CCCChHHH------HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--------CCeEEEEecChHHHHhh
Q psy2681 95 RDLSGGQK------ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--------QGGVILVSHDERLIRET 159 (211)
Q Consensus 95 ~~LSgG~k------qRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--------~~tiiivsHd~~~~~~~ 159 (211)
+--|.||| =|+|+|=.+..++.+|-|||||++||..+..-+...+.+. +--.|++|||..|+..+
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i 1260 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLL 1260 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHh
Confidence 45799999 5888999999999999999999999999987766655322 23788999999998754
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.78 E-value=0.00017 Score=64.61 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=91.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~ 79 (211)
+.+..|.++.++++-. .+|||++ ++|..+|+.|.+. ++.+.. ..+.+++...
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~--------~iGerg-------~ev~e~~~~~----------- 204 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVIS--------LVGERG-------REVKDFIRKE----------- 204 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEE--------eCCCCc-------ccHHHHHHHH-----------
Confidence 5677888999996664 5899999 9999988776442 333321 3445554321
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHh-------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-------NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~-------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
+..-|+....--....+.|.|+|+|++.+.+.+ .++-++++|+||++.|+. .++...+.+. +.+..+.
T Consensus 205 l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~ 282 (432)
T PRK06793 205 LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLME 282 (432)
T ss_pred hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeee
Confidence 111122210000135789999999999999888 899999999999999986 5555555544 3477778
Q ss_pred ecChHHHHhhCCeEEEEeCCcee
Q psy2681 150 SHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
||...++++.+. ..+|.+.
T Consensus 283 s~l~~L~ERag~----~~~GSiT 301 (432)
T PRK06793 283 SYMKKLLERSGK----TQKGSIT 301 (432)
T ss_pred ccchhHHHHhcc----CCCcceE
Confidence 886666666542 3577664
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00022 Score=58.63 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCC---CCHHHHHHHHHHHH---hcCCeEEEEecChHH-------HHhh
Q psy2681 95 RDLSGGQKARVALAELTLN--NPDILILDEPTNN---LDIESIDALAEAIK---NYQGGVILVSHDERL-------IRET 159 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~--~p~lllLDEPt~g---LD~~~~~~l~~~l~---~~~~tiiivsHd~~~-------~~~~ 159 (211)
...|.++++.+..+..++. +|+++++||||+. .|......+.+.++ +.+.|+++++|+... +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3467899999999999987 9999999999964 44555555544453 346799999997654 4556
Q ss_pred CCeEEEEe
Q psy2681 160 DCELWALE 167 (211)
Q Consensus 160 ~~~v~~l~ 167 (211)
+|-++.|.
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 66666665
No 456
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.64 E-value=0.00011 Score=60.70 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCC----CHHHHHHHHHHHHhc---CCeEEEEecChHHH--------
Q psy2681 96 DLSGGQKARVALAELTL----NNPDILILDEPTNNL----DIESIDALAEAIKNY---QGGVILVSHDERLI-------- 156 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~----~~p~lllLDEPt~gL----D~~~~~~l~~~l~~~---~~tiiivsHd~~~~-------- 156 (211)
.+|+++.++-.+.+.+. .+|+++++||||+++ |+.....+.++++.+ +.|+ ++||+....
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~ 173 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTIL 173 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeE
Confidence 46777665555554443 369999999999999 888778888887654 4444 556765542
Q ss_pred HhhCCeEEEEe
Q psy2681 157 RETDCELWALE 167 (211)
Q Consensus 157 ~~~~~~v~~l~ 167 (211)
..++|-++.|+
T Consensus 174 ~~~~DgvI~L~ 184 (230)
T PRK08533 174 RTAATMLIRLE 184 (230)
T ss_pred EEeeeEEEEEE
Confidence 33445555554
No 457
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.61 E-value=0.00015 Score=72.63 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=61.0
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhCCeEE
Q psy2681 93 PIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~ 164 (211)
.+..||||||-.++||..|+ ...++.+|||-=++||..+...+.++|++.. .-.|+|||....... +++.+
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~-ad~l~ 1139 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEA-ADRLV 1139 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHH-HHHHe
Confidence 45679999999999988874 6889999999999999999999999999874 469999999877754 46664
No 458
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.56 E-value=0.00017 Score=70.07 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=45.0
Q ss_pred HHHHHhcCCCeEEEeCCCCCC-CHHHHHHHHHHHH---hcCCeEEEEecChHHHHh
Q psy2681 107 LAELTLNNPDILILDEPTNNL-DIESIDALAEAIK---NYQGGVILVSHDERLIRE 158 (211)
Q Consensus 107 iaral~~~p~lllLDEPt~gL-D~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~ 158 (211)
|++++..+|+++++|||+.+| |+..+..+.+.++ +.+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677888999999999999999 7888888877775 446799999999998875
No 459
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.50 E-value=0.00056 Score=54.72 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=64.8
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.....|.||-=---+.+. .++.-++|||||-++|.|.-+..++..|+++ |.-+||+||.+-++.---.+|+-+..+
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecC
Confidence 457889999755444444 4567899999999999999999999998876 568999999998887777888888888
Q ss_pred cee
Q psy2681 170 NIR 172 (211)
Q Consensus 170 ~i~ 172 (211)
++.
T Consensus 205 g~~ 207 (233)
T COG3910 205 GIE 207 (233)
T ss_pred Ccc
Confidence 764
No 460
>KOG0933|consensus
Probab=97.47 E-value=6.5e-05 Score=71.88 Aligned_cols=62 Identities=32% Similarity=0.470 Sum_probs=51.4
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChH
Q psy2681 93 PIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDER 154 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~ 154 (211)
..++||||||-.|||+..|+ ..++++||||--++||....+.|-.+|+.. +.-.|+||=---
T Consensus 1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeG 1146 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEG 1146 (1174)
T ss_pred HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhh
Confidence 56899999999998876553 688999999999999999999999999864 346777775433
No 461
>KOG0964|consensus
Probab=97.41 E-value=8.2e-05 Score=71.01 Aligned_cols=72 Identities=28% Similarity=0.402 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEEEecChHHHHhhCCeEEEE
Q psy2681 94 IRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--tiiivsHd~~~~~~~~~~v~~l 166 (211)
+.+||||||--||||..++ -.++++||||--++||+..+..+.++|+++.. -.|.+|-.++++ .++|.++-+
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll-~vAdKfygV 1172 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELL-SVADKFYGV 1172 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHH-HHHHhhhce
Confidence 4589999999999998885 46799999999999999999999999998843 466666666555 678888743
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.37 E-value=0.00084 Score=60.49 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=86.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~t 60 (211)
+.+..+.++.++++-. .+|||++ ++|...|+.|.+...+ ++.+.++.+... .+
T Consensus 153 ~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~---~~--- 226 (438)
T PRK07721 153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ---PA--- 226 (438)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC---CH---
Confidence 3566788999996554 5899999 9999999998875311 234555543221 00
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCCh-HHHHH-HHHHHHHhcCCCeEEEeCC--CCCCCHHHHHHHH
Q psy2681 61 PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG-GQKAR-VALAELTLNNPDILILDEP--TNNLDIESIDALA 136 (211)
Q Consensus 61 ~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg-G~kqR-v~iaral~~~p~lllLDEP--t~gLD~~~~~~l~ 136 (211)
+..+...+. .-.+.+++..-|-+-.. -..+++- -|-+| +++ .+.|| |+|+|+.....+.
T Consensus 227 ~~r~~~~~~---a~~iAEyfr~~g~~Vll---~~Dsltr~A~A~rEisl-----------~~ge~P~~~G~dp~~~~~l~ 289 (438)
T PRK07721 227 LMRIKGAYT---ATAIAEYFRDQGLNVML---MMDSVTRVAMAQREIGL-----------AVGEPPTTKGYTPSVFAILP 289 (438)
T ss_pred HHHHHHHHH---HHHHHHHHHHCCCcEEE---EEeChHHHHHHHHHHHH-----------hcCCCCccccCCHHHHHHHH
Confidence 111111000 01122333322422111 1223332 22222 111 12343 7899999999999
Q ss_pred HHHHhcC----C------eEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 137 EAIKNYQ----G------GVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 137 ~~l~~~~----~------tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+++.+.+ + ||++.+||++. .+|+++..+.+|+++.
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVL 334 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEE
Confidence 9987653 2 89999999984 7899999999999863
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.35 E-value=0.00023 Score=58.83 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=34.4
Q ss_pred HHhcCCCeEEEeCCCCC------CCHHHHHHHHHHHHh----cCCeEEEEecChH
Q psy2681 110 LTLNNPDILILDEPTNN------LDIESIDALAEAIKN----YQGGVILVSHDER 154 (211)
Q Consensus 110 al~~~p~lllLDEPt~g------LD~~~~~~l~~~l~~----~~~tiiivsHd~~ 154 (211)
+...+|+++++| |++. +|+.....+.+.|.+ .+.+||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 8764 688888877777644 4679999999864
No 464
>PF13166 AAA_13: AAA domain
Probab=97.34 E-value=0.00097 Score=63.42 Aligned_cols=67 Identities=28% Similarity=0.477 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHHHH--hc-------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C--CeEEEEecChHHHHh
Q psy2681 93 PIRDLSGGQKARVALAELT--LN-------NPDILILDEPTNNLDIESIDALAEAIKNY---Q--GGVILVSHDERLIRE 158 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral--~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~--~tiiivsHd~~~~~~ 158 (211)
+...||-|||.-+++|-=| +. +..++++|-|-|+||...+..+...|.+. . .-|||-|||+.+...
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~ 576 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE 576 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence 4578999999999987533 23 67899999999999999999999999876 3 479999999988764
Q ss_pred h
Q psy2681 159 T 159 (211)
Q Consensus 159 ~ 159 (211)
+
T Consensus 577 l 577 (712)
T PF13166_consen 577 L 577 (712)
T ss_pred H
Confidence 4
No 465
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.14 E-value=0.0018 Score=48.99 Aligned_cols=62 Identities=21% Similarity=0.070 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEEeCCCCC----------CCHHHHHHHHHHHH---hcCCeEEEEecChHHHH
Q psy2681 96 DLSGGQKARVALAELTLNNPDILILDEPTNN----------LDIESIDALAEAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~ 157 (211)
..+.+..+++..+++...+|+++++|||++- .|......+.+++. +.+.|+|+++|......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 4456666778889999999999999999954 44444555555543 34679999999876553
No 466
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0017 Score=56.92 Aligned_cols=76 Identities=25% Similarity=0.240 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC---e
Q psy2681 95 RDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC---E 162 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~---~ 162 (211)
...|-||++-+++|.-|+ ..++|||||+-++.||..-+..+++. .+.+.-+++++-+.+.+...-. +
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~~~Q~fvT~t~~~~~~~~~~~~~~ 352 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IELGVQVFVTTTDLEDIDDNLDENAQ 352 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cccCCeEEEEccCHHHhhhhhhccce
Confidence 469999999998887664 67899999999999999999999999 6667667777777777763333 6
Q ss_pred EEEEeCCce
Q psy2681 163 LWALEKKNI 171 (211)
Q Consensus 163 v~~l~~g~i 171 (211)
++.+.+|++
T Consensus 353 ~f~V~~g~i 361 (363)
T COG1195 353 MFHVEDGKI 361 (363)
T ss_pred EEEEeccee
Confidence 777788876
No 467
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=96.77 E-value=0.0045 Score=60.32 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc--CCCeEEEeCC---CCCCCHHHH-HHHHHHHHhc-CCeEEEEe
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN--NPDILILDEP---TNNLDIESI-DALAEAIKNY-QGGVILVS 150 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~--~p~lllLDEP---t~gLD~~~~-~~l~~~l~~~-~~tiiivs 150 (211)
.++.++|-.+. ....+|--|.....++.++-. ++.++|+||| |+.+|..+. ..+.+.+.+. +.++|++|
T Consensus 652 ~I~triga~d~----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aT 727 (854)
T PRK05399 652 RIFTRIGASDD----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFAT 727 (854)
T ss_pred eeeeccCcccc----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEe
Confidence 34455554432 345688888888888888765 9999999999 999997663 3466666665 46899999
Q ss_pred cChHHHHhhCC
Q psy2681 151 HDERLIRETDC 161 (211)
Q Consensus 151 Hd~~~~~~~~~ 161 (211)
|+.+.. .+++
T Consensus 728 H~~el~-~l~~ 737 (854)
T PRK05399 728 HYHELT-ELEE 737 (854)
T ss_pred chHHHH-HHhh
Confidence 995544 4444
No 468
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.74 E-value=0.003 Score=61.21 Aligned_cols=47 Identities=30% Similarity=0.221 Sum_probs=38.3
Q ss_pred HhcCCCeEEEeCCCCCCC-HHHHHHHHHHHH---hcCCeEEEEecChHHHH
Q psy2681 111 TLNNPDILILDEPTNNLD-IESIDALAEAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 111 l~~~p~lllLDEPt~gLD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~ 157 (211)
+-.+|+++++|||+.+|| +.....+.+.++ +.+.+++++||++..+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 346899999999999999 676777777664 45779999999998665
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.72 E-value=9.4e-05 Score=67.48 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=52.0
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALA--ELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERL 155 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~ia--ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---~~~~tiiivsHd~~~ 155 (211)
+.+++++..++ ....+|+|++|||.|+ .++...|+.. +..+..+.++++ +.+.|+|++||+.+.
T Consensus 101 ~~~~l~~~l~~-i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 101 GGFDLSALIER-INYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred ccCCHHHHHHH-HHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 34455444443 5678999999999999 5665555444 355666666554 447899999998764
Q ss_pred ---------HHhhCCeEEEEe
Q psy2681 156 ---------IRETDCELWALE 167 (211)
Q Consensus 156 ---------~~~~~~~v~~l~ 167 (211)
.+.++|.|+.|+
T Consensus 170 ~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 170 YGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccCCceeEeeeeEEEEE
Confidence 266788888776
No 470
>KOG0996|consensus
Probab=96.51 E-value=0.0023 Score=62.51 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=59.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
+.+..||||+|-.-+||..++ ...+++++||--++||..+...+..+|++. +.-.||||=.-+. .++++|.+-
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnM-FELa~rLvG 1269 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNM-FELANRLVG 1269 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhH-HHHHhhhee
Confidence 468999999999988888776 467999999999999999999999999976 3457777764444 356788775
Q ss_pred E
Q psy2681 166 L 166 (211)
Q Consensus 166 l 166 (211)
+
T Consensus 1270 I 1270 (1293)
T KOG0996|consen 1270 I 1270 (1293)
T ss_pred e
Confidence 4
No 471
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.44 E-value=0.0075 Score=58.38 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=40.3
Q ss_pred HHhcCCCeEEEeCCCCCCC-HHHHHHHHHHHH---hcCCeEEEEecChHHHHh
Q psy2681 110 LTLNNPDILILDEPTNNLD-IESIDALAEAIK---NYQGGVILVSHDERLIRE 158 (211)
Q Consensus 110 al~~~p~lllLDEPt~gLD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~ 158 (211)
.+..+|.++++|||...|| +.....+.+.++ +.++.++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 3457999999999999999 777777777765 457799999999987654
No 472
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.34 E-value=0.0019 Score=51.27 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHH--HHhhCCeEEEEeCCc
Q psy2681 99 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERL--IRETDCELWALEKKN 170 (211)
Q Consensus 99 gG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~--~~~~~~~v~~l~~g~ 170 (211)
.|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+. +.+|++.+|.+.. +...||.++++..+.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 388999999999999999998887 889999999999998765 2489999999865 677899999887663
No 473
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.029 Score=51.80 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHh--cC--CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTL--NN--PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~--~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+..||||--|++||.-.+ .. .+.|||||--+|+--.....+-+.|++++ .-||.|||-+..+.. ++.-+.+.+
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~-ad~H~~V~K 508 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAM-ADTHFLVEK 508 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhh-hcceEEEEE
Confidence 568999999999887554 33 55999999999999999999999999985 479999998877765 455555543
No 474
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.007 Score=52.52 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=35.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHh
Q psy2681 118 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRE 158 (211)
Q Consensus 118 llLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 158 (211)
+++|||+.+||+.++..+++.|.+. +.++|++||+.+.+..
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLP 158 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChH
Confidence 5578999999999999999999987 4689999999886653
No 475
>KOG0018|consensus
Probab=96.18 E-value=0.0084 Score=58.29 Aligned_cols=74 Identities=30% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
++...||||+|--.+||..++ +.+++.+|||--++||-.+...+..+|+..+--.|+||=-..+..+ ++-.+-+
T Consensus 1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr~~~~Q~IvISLK~~~y~k-adaLVGv 1124 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIRSSNFQFIVISLKEEFYQK-ADALVGV 1124 (1141)
T ss_pred CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHhcCCceEEEEeccHHHhhh-hhceeee
Confidence 366889999999999998886 4589999999999999999999999999666667777776667655 3555544
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.02 E-value=0.012 Score=47.16 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
++++++..+|+++++|||. |.+....+.+... .+..++.++|..+... ..+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~-~G~~v~~t~Ha~~~~~-~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAAE-TGHLVMSTLHTNSAAK-TIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHH-cCCEEEEEecCCcHHH-HHhHHHhh
Confidence 4788999999999999996 6776665555443 4678999999876553 34565433
No 477
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.68 E-value=0.016 Score=49.80 Aligned_cols=77 Identities=21% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--C-CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 104 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--Q-GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 104 Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~-~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.-.+..+|-.+|+++++|||.+ . +.+++++.. + .+++.++|..+... ..+|+..+..|++... |...+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~l~a~~~g~~~~i~T~Ha~~~~~-~~~Rl~~l~~~~~~~~-g~~~~ 278 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---D----EAFDFIRAVNTGHPGSITTLHAGSPEE-AFEQLALMVKSSQAGL-GLDFA 278 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---H----HHHHHHHHHhcCCCeEEEEEeCCCHHH-HHHHHHHHhhcccccc-CCCHH
Confidence 3467778999999999999996 2 233444433 3 36799999998554 4688887877776543 43333
Q ss_pred HHHHHHHHh
Q psy2681 181 YREKLLTSL 189 (211)
Q Consensus 181 ~~~~~~~~~ 189 (211)
...+.+.+.
T Consensus 279 ~~~~~i~~~ 287 (308)
T TIGR02788 279 YIVKLVREV 287 (308)
T ss_pred HHHHHHHHh
Confidence 333333333
No 478
>PF13514 AAA_27: AAA domain
Probab=95.52 E-value=0.039 Score=55.41 Aligned_cols=65 Identities=34% Similarity=0.476 Sum_probs=52.9
Q ss_pred CCCCCChHHHH------HHHHHHHH-hcCCCe-EEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHH
Q psy2681 93 PIRDLSGGQKA------RVALAELT-LNNPDI-LILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIR 157 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral-~~~p~l-llLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~ 157 (211)
++..||.|-+= |++++..+ -..+++ +|+|+||.+.|..-....+++|.++. .=||+=||+.+.+.
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVE 1096 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHH
Confidence 56789999994 56666666 445555 99999999999999999999999874 46888899888775
No 479
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=94.73 E-value=0.26 Score=44.07 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-------------HHHHHHHhc-C--CeEEEEecChHHHHh
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID-------------ALAEAIKNY-Q--GGVILVSHDERLIRE 158 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-------------~l~~~l~~~-~--~tiiivsHd~~~~~~ 158 (211)
..-||-+.+-..|=+++=...+.+|+||=+++...-.+. .+.+.+.+. + .++|+||.-...+..
T Consensus 319 gdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla 398 (554)
T COG3044 319 GDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLA 398 (554)
T ss_pred CCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhh
Confidence 578999999999999999999999999999987653332 233333333 3 488888888888889
Q ss_pred hCCeEEEEeCCcee
Q psy2681 159 TDCELWALEKKNIR 172 (211)
Q Consensus 159 ~~~~v~~l~~g~i~ 172 (211)
.+||+++|++.+-.
T Consensus 399 ~aDRaIvMeDhrpk 412 (554)
T COG3044 399 VADRAIVMEDHRPK 412 (554)
T ss_pred hcceEEEecccCcc
Confidence 99999999988753
No 480
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.33 E-value=0.099 Score=47.28 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=41.9
Q ss_pred cCCCeEEEeCCCCCCCHH-HHHHHHHHHHhc---CCeEEEEe-cChHHHHhhCCeEE-EEeCCceeee
Q psy2681 113 NNPDILILDEPTNNLDIE-SIDALAEAIKNY---QGGVILVS-HDERLIRETDCELW-ALEKKNIRKF 174 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~-~~~~l~~~l~~~---~~tiiivs-Hd~~~~~~~~~~v~-~l~~g~i~~~ 174 (211)
.+|++|++|||...+|.. .+..++..+..+ ++.+|++| |++..+..+.+++. -+..|-++.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 479999999999988765 345677776543 55666665 88888776666554 2445545444
No 481
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.24 Score=46.96 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=57.9
Q ss_pred CCCChHHHHHHH---HHHHHh--------cCC--CeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC--hHHHHhh
Q psy2681 95 RDLSGGQKARVA---LAELTL--------NNP--DILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD--ERLIRET 159 (211)
Q Consensus 95 ~~LSgG~kqRv~---iaral~--------~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd--~~~~~~~ 159 (211)
..+|||||++++ ||.+|. +.| ..+||||.|+-=|+......+..+++++--.+++|-. +..+..+
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~fglh~v~iTPlk~I~~l~~~ 1068 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREFGLHAVFITPLKEIRLLRHH 1068 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHcCceEEEechHHHHHHHHhh
Confidence 469999999986 455553 223 3689999999999999999999999999877777753 4556666
Q ss_pred CCeEEEEeCC
Q psy2681 160 DCELWALEKK 169 (211)
Q Consensus 160 ~~~v~~l~~g 169 (211)
...++++++.
T Consensus 1069 v~S~ivVh~~ 1078 (1104)
T COG4913 1069 VRSAIVVHRR 1078 (1104)
T ss_pred ccceEEEecC
Confidence 6666766654
No 482
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=94.11 E-value=0.15 Score=49.77 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHH-HHHHHHHHHh-cCCeEEEEecChHHHH
Q psy2681 95 RDLSGGQKARVALAELT--LNNPDILILDEP---TNNLDIES-IDALAEAIKN-YQGGVILVSHDERLIR 157 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~-~~~l~~~l~~-~~~tiiivsHd~~~~~ 157 (211)
..+|-=|--...++..| +.++.++|+||+ |+.+|-.+ ...+.+.+.+ .+..++++||..++..
T Consensus 650 ~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 650 SGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred cCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 34566555555555555 578999999999 55555555 4446667666 5668999999986653
No 483
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.65 E-value=0.054 Score=55.67 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=46.1
Q ss_pred CCCCChHHHHHHHHHHHHh--------cC--------C-CeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEe-cChH
Q psy2681 94 IRDLSGGQKARVALAELTL--------NN--------P-DILILDEPTNNLDIESIDALAEAIKNYQGGVILVS-HDER 154 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~--------~~--------p-~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivs-Hd~~ 154 (211)
.+.||||||..+..+..++ .. | .+|+|||- +++|..+...++++++.++.-+||+| +++.
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~tP~~~~ 1440 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAAPENIS 1440 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEechhhcc
Confidence 5789999998877666554 21 2 44699999 99999999999999999887555555 4443
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.35 E-value=0.078 Score=42.18 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
...+.+..+....... .+..++|.|++++..+ .+.+|+++|+|.|+.+.++.
T Consensus 63 ~~~~~l~~l~~~~~~~-~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 63 LLISHLQDLKNGKSVE-IPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHHHHHHCCCCEe-ccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 3445666666554444 3778999999876655 57889999999999998863
No 485
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.23 E-value=0.8 Score=32.65 Aligned_cols=59 Identities=37% Similarity=0.333 Sum_probs=45.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-------H--HHhcCCeEEEEecC
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-------A--IKNYQGGVILVSHD 152 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-------~--l~~~~~tiiivsHd 152 (211)
....++++..+..+.++-..+|.++++||+..-.+......... . ....+..+|.++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 35678888899999999888899999999999999988776543 1 11224588888884
No 486
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=93.05 E-value=0.65 Score=41.86 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH---------------HHHHH----HhcCCeEEEEecChH
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA---------------LAEAI----KNYQGGVILVSHDER 154 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~---------------l~~~l----~~~~~tiiivsHd~~ 154 (211)
..+=||-.-|-..|.-|+=..+++||+||=|++-..-.+.. |.+.+ .+++.+.|+|+--..
T Consensus 320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg 399 (448)
T PF09818_consen 320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG 399 (448)
T ss_pred ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch
Confidence 35789999999999999999999999999999754432221 12222 334665555556666
Q ss_pred HHHhhCCeEEEEeCCce
Q psy2681 155 LIRETDCELWALEKKNI 171 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i 171 (211)
.....+|+|+.|++-+-
T Consensus 400 dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhHhhCCEEEEecCccc
Confidence 77788999999987654
No 487
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=92.97 E-value=0.47 Score=39.20 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHHH--hcCCCeEEEeCCCCCCCHHHHHHH----HHHHHh-cCCeEEEEecChHHHH
Q psy2681 96 DLSGGQKARVALAELT--LNNPDILILDEPTNNLDIESIDAL----AEAIKN-YQGGVILVSHDERLIR 157 (211)
Q Consensus 96 ~LSgG~kqRv~iaral--~~~p~lllLDEPt~gLD~~~~~~l----~~~l~~-~~~tiiivsHd~~~~~ 157 (211)
.+|.=+.-...++.++ +.+..++|+||+..|=++.....+ .+.|.+ .+..+|++||+.+...
T Consensus 102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 4555333333333333 567889999999999999765544 444444 4668999999987644
No 488
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.73 E-value=0.26 Score=45.49 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=52.1
Q ss_pred CCC-CChHHHHHHHHHHHHh---cC-----CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhh
Q psy2681 94 IRD-LSGGQKARVALAELTL---NN-----PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET 159 (211)
Q Consensus 94 ~~~-LSgG~kqRv~iaral~---~~-----p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 159 (211)
+++ ||-|++.-++++--|+ .+ -+++++|-|.+++|....-....+++.. +.-|++-|||-.++..+
T Consensus 526 ~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~rd~ 603 (758)
T COG4694 526 VGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYRDI 603 (758)
T ss_pred ccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehHHH
Confidence 344 9999999888765443 34 4688999999999999988888888765 45899999998776654
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.23 E-value=0.34 Score=45.75 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+.++.+|+...... .+..+||| +|++|| +..||+..+..+.+.+.+
T Consensus 244 a~~~l~~~gl~~~~~g-~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPEPKTG-LVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCchhcC-chhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 4556788888766654 77899999 999999 799999999999999975
No 490
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=92.20 E-value=0.25 Score=46.09 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=44.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhC-CeEEEE
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETD-CELWAL 166 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~-~~v~~l 166 (211)
..|.+||.+||-++|-|..+..++++++..+ .-+|++||..+++.... +.++.+
T Consensus 300 ~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~l 356 (581)
T COG3593 300 ARPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRL 356 (581)
T ss_pred cccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEE
Confidence 3455999999999999999999999999887 78999999999987443 344433
No 491
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.87 E-value=0.61 Score=36.32 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCC--CHHHHHHHHHHHHhc--CCeEEEEecCh-HHHHhhCCeEEEEeC
Q psy2681 105 VALAELTL--NNPDILILDEPTNNL--DIESIDALAEAIKNY--QGGVILVSHDE-RLIRETDCELWALEK 168 (211)
Q Consensus 105 v~iaral~--~~p~lllLDEPt~gL--D~~~~~~l~~~l~~~--~~tiiivsHd~-~~~~~~~~~v~~l~~ 168 (211)
...|+..+ .+.++++|||-...+ +....+.+.++|++. +..+|++.++. ..+...+|.|-.|..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 34444444 578999999998874 456778899999876 35899999986 456678888877754
No 492
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.41 E-value=0.54 Score=41.06 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 105 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
-+++++|-.+|+++++||+. |+++.....+.. ..|.+++.+.|-.
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTN 230 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCC
Confidence 34778899999999999997 888877655543 3366888888873
No 493
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=90.12 E-value=0.66 Score=36.26 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCC-ccccCCCCCCChHHHHHHH--HHHHHhc-CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 76 SRRQLGMFGLPS-YAHTIPIRDLSGGQKARVA--LAELTLN-NPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 76 ~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~--iaral~~-~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+.+++..+++.- ...+ ++..+|+|++|++. +++.+-. +++++ |+|++|..+...+.+.|.++
T Consensus 127 i~~~l~~~~~~~iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHcCCcEEEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 345566666642 2334 57789999999877 5555544 34444 99999999999999988753
No 494
>PRK04296 thymidine kinase; Provisional
Probab=90.11 E-value=2.7 Score=33.29 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=41.6
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC---------h-HHHHhhCCeEEEEe
Q psy2681 112 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD---------E-RLIRETDCELWALE 167 (211)
Q Consensus 112 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd---------~-~~~~~~~~~v~~l~ 167 (211)
..+++++++||- --|+.+....+.+.++..+.+|+++.++ . ..+..++|.|..|.
T Consensus 76 ~~~~dvviIDEa-q~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 76 GEKIDCVLIDEA-QFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCCEEEEEcc-ccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 357899999999 4466665566777777778899999999 2 35556788887764
No 495
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.84 E-value=0.16 Score=41.27 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=34.6
Q ss_pred CCCeEEEeCCCCCC--CHHHHH----HHHHHHHhcCCeEEEEecChH--------HHHhhCCeEEEEe
Q psy2681 114 NPDILILDEPTNNL--DIESID----ALAEAIKNYQGGVILVSHDER--------LIRETDCELWALE 167 (211)
Q Consensus 114 ~p~lllLDEPt~gL--D~~~~~----~l~~~l~~~~~tiiivsHd~~--------~~~~~~~~v~~l~ 167 (211)
+|+++++|-|+.-+ ++.... .+...+++.+.|+|+++|... .++.+||-++.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57788888876542 332222 344455667889999999643 2456677787776
No 496
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=0.71 Score=39.45 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhh
Q psy2681 105 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET 159 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 159 (211)
+.++.....+--++|..+|-++|-|+.+..+.++|.+. +.-+++-||.-..+..+
T Consensus 251 i~L~lli~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhiiNgl 308 (374)
T COG4938 251 IGLMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIINGL 308 (374)
T ss_pred HHHHeeeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHHhhhh
Confidence 34444334455678899999999999999999998765 56899999987777654
No 497
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.53 E-value=1.3 Score=39.53 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCeEEEeC----------CCCCCCHHHHHHHHHHHHhc-------CCeEEEEecChHHHH
Q psy2681 106 ALAELTLNNPDILILDE----------PTNNLDIESIDALAEAIKNY-------QGGVILVSHDERLIR 157 (211)
Q Consensus 106 ~iaral~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~ 157 (211)
.+..|....|.++++|| +.++.|......+.+++... +..||++||.++.+.
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 45556678999999999 55677888777787777654 236999999876553
No 498
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.40 E-value=1.6 Score=34.67 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHh--cCCCeEEEeCCCCCCCH--HHHHHHHHHHHhcC--CeEEEEecCh-HHHHhhCCeEEEEeCC
Q psy2681 103 ARVALAELTL--NNPDILILDEPTNNLDI--ESIDALAEAIKNYQ--GGVILVSHDE-RLIRETDCELWALEKK 169 (211)
Q Consensus 103 qRv~iaral~--~~p~lllLDEPt~gLD~--~~~~~l~~~l~~~~--~tiiivsHd~-~~~~~~~~~v~~l~~g 169 (211)
+-...|+..+ .+.++++|||-...++. ...+.+.++|++.. ..||++-++. ..+...+|.|-.|..+
T Consensus 102 ~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~ 175 (178)
T PRK07414 102 ELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS 175 (178)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence 3345566566 56899999999987765 56788999998763 4799988885 5566788998888765
No 499
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.66 E-value=1 Score=36.50 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred cCCCeEEEeCCCCCC------CHHHHHHHHHHH---HhcCCeEEEEecCh---------HHHHhhCCeEEEEe
Q psy2681 113 NNPDILILDEPTNNL------DIESIDALAEAI---KNYQGGVILVSHDE---------RLIRETDCELWALE 167 (211)
Q Consensus 113 ~~p~lllLDEPt~gL------D~~~~~~l~~~l---~~~~~tiiivsHd~---------~~~~~~~~~v~~l~ 167 (211)
.+++++++| |.+.+ |...+..+.+++ ++.+.|++++||.. ..++.+||.++.|.
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 478999999 54443 444455555554 45578999999952 44677888888885
No 500
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=87.59 E-value=0.39 Score=42.76 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=49.2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC---CeEEEEecChHHHHhhCCeEE
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ---GGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~---~tiiivsHd~~~~~~~~~~v~ 164 (211)
+..+++..+++....+.++...|.++++ |-+|......+.+.+.+ ++ ..+.+++|+-.-+..+++.++
T Consensus 255 ~~e~~~~l~~eL~~~~~~L~~kP~IlVl----NKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~ 329 (390)
T PRK12298 255 PVENARIIINELEKYSPKLAEKPRWLVF----NKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLM 329 (390)
T ss_pred hHHHHHHHHHHHHhhhhhhcCCCEEEEE----eCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 4567889999999999999999999999 99997655544444332 22 357788888766666655553
Done!