Query psy2681
Match_columns 211
No_of_seqs 268 out of 1455
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:28:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.5E-38 5E-43 276.1 18.9 174 3-181 50-251 (366)
2 3tif_A Uncharacterized ABC tra 100.0 1.3E-38 4.4E-43 262.1 16.8 172 3-179 27-230 (235)
3 2olj_A Amino acid ABC transpor 100.0 4.1E-38 1.4E-42 263.1 19.0 175 3-182 46-247 (263)
4 1b0u_A Histidine permease; ABC 100.0 5.1E-38 1.7E-42 262.4 18.1 174 3-181 28-240 (262)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 6.6E-38 2.3E-42 271.7 18.6 176 3-182 26-227 (359)
6 2onk_A Molybdate/tungstate ABC 100.0 5.5E-38 1.9E-42 259.1 17.0 173 4-182 22-215 (240)
7 3rlf_A Maltose/maltodextrin im 100.0 9.7E-38 3.3E-42 272.4 19.4 175 3-182 25-222 (381)
8 3gfo_A Cobalt import ATP-bindi 100.0 4.8E-38 1.6E-42 264.3 15.6 176 3-182 30-232 (275)
9 2yyz_A Sugar ABC transporter, 100.0 1.9E-37 6.4E-42 269.2 18.9 175 3-182 25-222 (359)
10 4g1u_C Hemin import ATP-bindin 100.0 1.1E-37 3.7E-42 261.0 16.8 183 3-190 33-245 (266)
11 2pcj_A ABC transporter, lipopr 100.0 9.4E-38 3.2E-42 255.2 15.7 167 3-173 26-219 (224)
12 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-37 6.6E-42 268.8 18.4 175 3-182 27-229 (353)
13 1z47_A CYSA, putative ABC-tran 100.0 1.2E-37 4.2E-42 269.9 17.1 175 3-182 37-234 (355)
14 1vpl_A ABC transporter, ATP-bi 100.0 2.3E-37 7.8E-42 257.7 17.8 175 3-182 37-234 (256)
15 3d31_A Sulfate/molybdate ABC t 100.0 2.1E-37 7.2E-42 268.0 17.0 174 3-181 22-215 (348)
16 1ji0_A ABC transporter; ATP bi 100.0 1.6E-37 5.4E-42 256.3 15.3 175 3-182 28-227 (240)
17 2it1_A 362AA long hypothetical 100.0 2.6E-37 8.8E-42 268.6 17.1 175 3-182 25-222 (362)
18 1v43_A Sugar-binding transport 100.0 3.4E-37 1.2E-41 268.7 17.5 176 3-182 33-230 (372)
19 1g6h_A High-affinity branched- 100.0 1.5E-37 5.1E-42 258.9 14.5 173 3-180 29-239 (257)
20 2nq2_C Hypothetical ABC transp 100.0 2.6E-37 8.8E-42 257.0 15.8 171 3-181 27-215 (253)
21 1g29_1 MALK, maltose transport 100.0 4.7E-37 1.6E-41 268.0 17.3 175 3-182 25-228 (372)
22 2yz2_A Putative ABC transporte 100.0 9.9E-37 3.4E-41 255.1 16.5 176 3-182 29-226 (266)
23 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-36 4.4E-41 252.2 15.9 173 3-181 22-220 (249)
24 2pjz_A Hypothetical protein ST 100.0 2.8E-36 9.6E-41 252.0 16.5 171 3-182 27-214 (263)
25 2ihy_A ABC transporter, ATP-bi 100.0 4.7E-37 1.6E-41 258.7 10.2 177 3-182 43-251 (279)
26 2ff7_A Alpha-hemolysin translo 100.0 1.2E-35 4E-40 246.1 14.7 173 3-181 31-230 (247)
27 2ixe_A Antigen peptide transpo 100.0 1.9E-35 6.5E-40 248.0 15.4 173 3-182 41-244 (271)
28 1mv5_A LMRA, multidrug resista 100.0 1.3E-35 4.5E-40 245.2 13.0 176 3-183 24-226 (243)
29 2zu0_C Probable ATP-dependent 100.0 3.2E-35 1.1E-39 246.1 14.6 174 3-181 42-252 (267)
30 3nh6_A ATP-binding cassette SU 100.0 4.6E-35 1.6E-39 249.4 15.8 174 3-183 76-277 (306)
31 2pze_A Cystic fibrosis transme 100.0 1.2E-34 4E-39 237.6 17.4 171 4-182 31-217 (229)
32 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-35 7.2E-40 244.9 12.6 172 3-179 25-229 (250)
33 1sgw_A Putative ABC transporte 100.0 1.4E-35 4.8E-40 240.8 9.2 163 3-171 31-210 (214)
34 2cbz_A Multidrug resistance-as 100.0 1.4E-34 4.6E-39 238.4 13.6 172 3-182 27-216 (237)
35 2ghi_A Transport protein; mult 100.0 5.2E-34 1.8E-38 237.9 15.6 173 3-182 42-241 (260)
36 3gd7_A Fusion complex of cysti 100.0 6.4E-34 2.2E-38 249.4 11.7 173 3-182 43-241 (390)
37 2bbs_A Cystic fibrosis transme 100.0 4.2E-33 1.4E-37 235.8 16.1 172 3-182 60-246 (290)
38 3b5x_A Lipid A export ATP-bind 100.0 1.5E-32 5.2E-37 252.1 17.7 175 3-182 365-566 (582)
39 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-32 4E-37 250.7 15.3 172 4-182 309-492 (538)
40 3bk7_A ABC transporter ATP-bin 100.0 1.3E-32 4.6E-37 253.2 15.2 173 4-183 379-563 (607)
41 3b60_A Lipid A export ATP-bind 100.0 2.4E-32 8.1E-37 250.8 16.0 176 3-183 365-567 (582)
42 2yl4_A ATP-binding cassette SU 100.0 2.6E-32 9.1E-37 251.0 16.1 173 3-181 366-568 (595)
43 4a82_A Cystic fibrosis transme 100.0 4.3E-32 1.5E-36 248.9 16.4 176 3-183 363-564 (578)
44 3qf4_B Uncharacterized ABC tra 100.0 3.7E-32 1.2E-36 250.3 16.0 176 3-183 377-578 (598)
45 3qf4_A ABC transporter, ATP-bi 100.0 8.6E-32 3E-36 247.3 17.7 175 3-183 365-566 (587)
46 3ozx_A RNAse L inhibitor; ATP 100.0 4.6E-32 1.6E-36 246.6 15.1 161 4-169 291-462 (538)
47 3j16_B RLI1P; ribosome recycli 100.0 4.2E-31 1.4E-35 243.1 19.5 170 7-183 378-559 (608)
48 2iw3_A Elongation factor 3A; a 100.0 9.6E-31 3.3E-35 249.8 13.1 171 2-173 694-978 (986)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.4E-30 1.8E-34 233.2 10.9 160 4-169 44-234 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 8.5E-30 2.9E-34 234.5 11.9 161 4-169 114-304 (607)
51 3g5u_A MCG1178, multidrug resi 100.0 3.8E-29 1.3E-33 246.5 16.2 174 3-182 412-612 (1284)
52 3g5u_A MCG1178, multidrug resi 100.0 2.6E-29 8.9E-34 247.7 14.4 175 3-183 1055-1258(1284)
53 2iw3_A Elongation factor 3A; a 100.0 5.6E-29 1.9E-33 237.7 15.2 174 3-183 457-635 (986)
54 4f4c_A Multidrug resistance pr 100.0 5.3E-29 1.8E-33 246.0 13.6 176 2-183 1100-1304(1321)
55 3ozx_A RNAse L inhibitor; ATP 100.0 8E-29 2.7E-33 225.3 9.2 162 5-170 23-214 (538)
56 3j16_B RLI1P; ribosome recycli 100.0 1.8E-28 6E-33 225.7 11.5 165 5-171 101-299 (608)
57 4f4c_A Multidrug resistance pr 100.0 3.6E-28 1.2E-32 240.1 13.0 173 3-181 440-639 (1321)
58 3ux8_A Excinuclease ABC, A sub 99.9 4.1E-27 1.4E-31 219.1 13.8 177 3-182 40-297 (670)
59 3ux8_A Excinuclease ABC, A sub 99.9 6.7E-25 2.3E-29 204.2 15.3 121 59-181 505-638 (670)
60 3pih_A Uvrabc system protein A 99.9 6.9E-24 2.4E-28 202.1 14.5 107 74-182 783-901 (916)
61 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-26 4.6E-31 207.0 -4.9 174 3-182 134-337 (460)
62 2vf7_A UVRA2, excinuclease ABC 99.9 6.9E-23 2.4E-27 193.8 18.1 105 75-181 709-825 (842)
63 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 2.6E-22 8.7E-27 153.8 10.9 75 92-167 53-136 (148)
64 4aby_A DNA repair protein RECN 99.9 1.6E-21 5.5E-26 171.2 15.9 76 97-173 296-379 (415)
65 2r6f_A Excinuclease ABC subuni 99.9 1.9E-21 6.6E-26 185.0 15.1 120 59-181 807-940 (972)
66 3pih_A Uvrabc system protein A 99.9 1.2E-21 4E-26 186.8 13.5 106 76-183 444-560 (916)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.9E-22 2.7E-26 171.5 10.6 80 92-172 275-363 (365)
68 2ygr_A Uvrabc system protein A 99.9 3.1E-21 1.1E-25 184.1 14.2 105 75-182 842-959 (993)
69 2r6f_A Excinuclease ABC subuni 99.8 7.8E-21 2.7E-25 180.8 11.8 103 78-182 486-599 (972)
70 2ygr_A Uvrabc system protein A 99.8 1.1E-20 3.8E-25 180.3 11.5 103 79-183 504-617 (993)
71 2vf7_A UVRA2, excinuclease ABC 99.8 3.5E-20 1.2E-24 175.4 10.9 102 79-182 362-474 (842)
72 3b85_A Phosphate starvation-in 99.8 4.3E-22 1.5E-26 160.7 -5.0 129 5-158 20-163 (208)
73 3kta_B Chromosome segregation 99.8 2.8E-18 9.7E-23 134.5 14.1 91 92-183 60-158 (173)
74 1e69_A Chromosome segregation 99.8 2.6E-18 8.8E-23 146.8 10.7 86 92-178 215-308 (322)
75 4ad8_A DNA repair protein RECN 99.8 1.5E-18 5E-23 157.1 9.4 76 93-169 393-473 (517)
76 3qkt_A DNA double-strand break 99.8 2.5E-18 8.5E-23 147.9 9.8 75 92-167 244-327 (339)
77 1ye8_A Protein THEP1, hypothet 99.7 2.5E-18 8.5E-23 135.3 7.0 152 9-188 2-175 (178)
78 1tq4_A IIGP1, interferon-induc 99.7 1.2E-20 4.2E-25 166.3 -11.3 154 9-170 71-255 (413)
79 2o5v_A DNA replication and rep 99.7 1.3E-17 4.5E-22 144.6 7.5 83 92-179 260-352 (359)
80 3auy_A DNA double-strand break 99.7 2.1E-16 7.3E-21 137.3 10.3 76 92-168 276-360 (371)
81 4gp7_A Metallophosphoesterase; 99.6 8.6E-17 3E-21 125.2 3.5 138 4-159 6-165 (171)
82 1w1w_A Structural maintenance 99.6 1.3E-15 4.4E-20 134.7 10.7 74 93-167 330-410 (430)
83 3b9q_A Chloroplast SRP recepto 99.6 1.6E-17 5.4E-22 141.0 -4.1 154 6-172 99-285 (302)
84 1tf7_A KAIC; homohexamer, hexa 99.6 9.2E-16 3.2E-20 139.0 4.6 145 5-170 279-444 (525)
85 3sop_A Neuronal-specific septi 99.6 2E-18 6.8E-23 144.4 -13.6 133 9-154 4-151 (270)
86 2og2_A Putative signal recogni 99.5 2E-16 6.7E-21 137.1 -3.1 154 6-172 156-342 (359)
87 3aez_A Pantothenate kinase; tr 99.5 9.6E-17 3.3E-21 136.7 -7.8 150 4-169 87-245 (312)
88 1znw_A Guanylate kinase, GMP k 99.5 2.8E-18 9.4E-23 137.4 -18.2 149 4-167 17-202 (207)
89 2pt7_A CAG-ALFA; ATPase, prote 99.4 3E-14 1E-18 122.1 3.3 119 5-171 169-292 (330)
90 2v9p_A Replication protein E1; 99.4 2.1E-16 7.1E-21 134.2 -12.2 140 3-181 122-264 (305)
91 2i3b_A HCR-ntpase, human cance 99.3 4.9E-15 1.7E-19 117.5 -6.8 156 7-190 1-185 (189)
92 2dpy_A FLII, flagellum-specifi 99.3 4.4E-14 1.5E-18 125.4 -1.8 148 2-172 152-334 (438)
93 2o8b_B DNA mismatch repair pro 99.3 1.6E-13 5.4E-18 132.7 0.9 132 9-172 790-930 (1022)
94 1ewq_A DNA mismatch repair pro 99.3 2.5E-13 8.6E-18 127.8 1.7 117 7-157 576-702 (765)
95 1z6g_A Guanylate kinase; struc 99.2 6.3E-16 2.2E-20 125.0 -19.4 152 2-163 18-204 (218)
96 3asz_A Uridine kinase; cytidin 99.2 8.1E-15 2.8E-19 116.9 -12.8 138 4-153 3-161 (211)
97 2obl_A ESCN; ATPase, hydrolase 99.2 9.4E-13 3.2E-17 113.6 -2.5 150 2-173 66-246 (347)
98 3thx_A DNA mismatch repair pro 99.1 4.7E-11 1.6E-15 114.4 6.7 89 79-172 708-803 (934)
99 3thx_B DNA mismatch repair pro 99.1 6.3E-11 2.2E-15 113.3 6.9 76 80-157 720-800 (918)
100 1nlf_A Regulatory protein REPA 99.1 7.4E-11 2.5E-15 98.1 5.7 140 6-157 29-185 (279)
101 1tf7_A KAIC; homohexamer, hexa 99.1 1.3E-13 4.6E-18 124.7 -12.2 143 3-168 35-209 (525)
102 2eyu_A Twitching motility prot 99.1 8.3E-12 2.8E-16 103.6 -1.2 117 5-164 23-143 (261)
103 1cr0_A DNA primase/helicase; R 99.1 3.1E-10 1.1E-14 95.0 8.3 77 94-171 127-237 (296)
104 4a74_A DNA repair and recombin 99.1 2.7E-10 9.3E-15 91.0 7.3 149 5-170 23-201 (231)
105 1rj9_A FTSY, signal recognitio 99.0 4.2E-12 1.4E-16 107.6 -4.2 133 7-153 102-258 (304)
106 2jeo_A Uridine-cytidine kinase 99.0 1.3E-11 4.4E-16 101.0 -3.7 139 4-161 22-174 (245)
107 2qnr_A Septin-2, protein NEDD5 99.0 3.5E-13 1.2E-17 114.0 -13.5 134 9-154 20-168 (301)
108 2w0m_A SSO2452; RECA, SSPF, un 98.9 1.5E-09 5.3E-14 86.5 7.3 74 96-169 103-192 (235)
109 3szr_A Interferon-induced GTP- 98.9 6.5E-11 2.2E-15 109.0 -3.2 137 10-171 48-226 (608)
110 2ehv_A Hypothetical protein PH 98.9 1.9E-09 6.5E-14 87.1 4.9 72 97-168 118-207 (251)
111 3jvv_A Twitching mobility prot 98.8 2.5E-10 8.6E-15 98.7 -1.3 57 106-167 188-244 (356)
112 1pzn_A RAD51, DNA repair and r 98.8 1.3E-10 4.4E-15 100.2 -3.2 74 98-171 208-304 (349)
113 1pui_A ENGB, probable GTP-bind 98.8 4E-11 1.4E-15 94.7 -7.4 67 75-142 128-196 (210)
114 2cvh_A DNA repair and recombin 98.8 2.1E-08 7.3E-13 79.4 8.2 75 95-169 83-185 (220)
115 1wb9_A DNA mismatch repair pro 98.7 5.9E-09 2E-13 98.6 2.3 74 95-170 668-746 (800)
116 2qag_C Septin-7; cell cycle, c 98.4 3.3E-09 1.1E-13 93.5 -5.2 131 9-154 33-178 (418)
117 2bbw_A Adenylate kinase 4, AK4 98.4 2.9E-10 9.9E-15 92.8 -11.9 124 8-142 28-196 (246)
118 1s96_A Guanylate kinase, GMP k 98.4 4.5E-09 1.6E-13 84.8 -5.4 122 3-158 12-145 (219)
119 2ewv_A Twitching motility prot 98.4 4.7E-08 1.6E-12 84.8 -0.1 107 6-162 135-252 (372)
120 1sxj_E Activator 1 40 kDa subu 98.3 2.9E-07 9.8E-12 78.3 4.5 122 12-155 40-176 (354)
121 2rcn_A Probable GTPase ENGC; Y 98.2 2.7E-07 9.3E-12 79.6 1.8 99 6-111 214-328 (358)
122 1udx_A The GTP-binding protein 98.0 1.1E-07 3.6E-12 83.8 -5.4 64 80-151 240-306 (416)
123 1zp6_A Hypothetical protein AT 98.0 1.3E-08 4.4E-13 79.2 -10.5 135 2-151 4-158 (191)
124 1lw7_A Transcriptional regulat 98.0 4.7E-08 1.6E-12 84.3 -8.1 150 7-166 170-341 (365)
125 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 2.8E-09 9.5E-14 93.2 -17.0 149 5-179 18-209 (392)
126 1odf_A YGR205W, hypothetical 3 97.9 8.7E-08 3E-12 80.5 -7.5 114 8-130 32-168 (290)
127 1n0w_A DNA repair protein RAD5 97.9 3.8E-05 1.3E-09 61.3 7.6 74 96-169 98-209 (243)
128 3e70_C DPA, signal recognition 97.8 5.6E-07 1.9E-11 76.8 -4.0 148 7-172 129-307 (328)
129 3ec2_A DNA replication protein 97.7 6.5E-05 2.2E-09 57.6 6.7 44 111-154 97-144 (180)
130 2gza_A Type IV secretion syste 97.7 2E-05 6.8E-10 67.9 3.9 135 5-189 173-322 (361)
131 2qag_B Septin-6, protein NEDD5 97.6 9.9E-06 3.4E-10 71.4 0.7 141 4-153 37-219 (427)
132 2yhs_A FTSY, cell division pro 97.4 5.5E-06 1.9E-10 74.3 -4.4 152 6-171 292-476 (503)
133 2yv5_A YJEQ protein; hydrolase 97.4 4.7E-06 1.6E-10 70.1 -4.7 100 6-109 164-300 (302)
134 2bdt_A BH3686; alpha-beta prot 97.3 5.4E-07 1.8E-11 70.0 -10.0 77 98-181 96-182 (189)
135 2px0_A Flagellar biosynthesis 97.3 0.00043 1.5E-08 57.9 6.6 131 7-172 105-245 (296)
136 2kjq_A DNAA-related protein; s 97.3 0.00027 9.3E-09 53.1 4.7 42 110-152 79-124 (149)
137 3lda_A DNA repair protein RAD5 97.3 0.00054 1.8E-08 59.8 7.2 57 113-169 272-363 (400)
138 1nij_A Hypothetical protein YJ 97.2 3.2E-05 1.1E-09 65.4 -1.7 64 81-157 128-193 (318)
139 1p9r_A General secretion pathw 97.1 5.2E-07 1.8E-11 79.4 -13.4 106 9-120 169-315 (418)
140 2oap_1 GSPE-2, type II secreti 97.1 8E-07 2.8E-11 80.1 -12.8 55 95-161 399-458 (511)
141 3euj_A Chromosome partition pr 96.9 0.0017 5.8E-08 58.0 7.1 71 93-166 376-463 (483)
142 2r6a_A DNAB helicase, replicat 96.8 0.0044 1.5E-07 54.6 8.6 76 94-171 293-401 (454)
143 2dr3_A UPF0273 protein PH0284; 96.7 0.0052 1.8E-07 48.6 8.0 56 113-168 127-196 (247)
144 2xau_A PRE-mRNA-splicing facto 96.7 0.00075 2.6E-08 63.6 3.0 70 93-162 187-261 (773)
145 3c8u_A Fructokinase; YP_612366 96.5 3.4E-06 1.2E-10 66.7 -12.1 134 6-162 21-168 (208)
146 1t9h_A YLOQ, probable GTPase E 96.4 0.00021 7.2E-09 60.3 -2.6 98 4-104 170-303 (307)
147 1u0l_A Probable GTPase ENGC; p 96.4 6.2E-05 2.1E-09 63.1 -6.0 91 6-99 168-294 (301)
148 2zr9_A Protein RECA, recombina 96.3 0.012 4.1E-07 50.2 8.2 68 103-170 126-231 (349)
149 1in4_A RUVB, holliday junction 96.1 5.1E-05 1.7E-09 64.4 -7.9 127 12-161 55-210 (334)
150 1ls1_A Signal recognition part 95.4 0.053 1.8E-06 45.0 8.1 115 8-150 99-219 (295)
151 2ce7_A Cell division protein F 95.4 0.018 6.3E-07 51.2 5.3 58 99-156 93-167 (476)
152 2f1r_A Molybdopterin-guanine d 95.3 0.00019 6.6E-09 55.3 -6.8 92 9-118 4-125 (171)
153 2e87_A Hypothetical protein PH 95.1 0.04 1.4E-06 46.8 6.4 61 93-154 228-293 (357)
154 2ius_A DNA translocase FTSK; n 94.7 0.0011 3.7E-08 59.7 -4.7 87 78-165 248-361 (512)
155 1vma_A Cell division protein F 94.4 0.019 6.4E-07 48.2 2.6 86 9-125 106-197 (306)
156 1lw7_A Transcriptional regulat 94.1 0.01 3.4E-07 50.7 0.4 29 96-124 296-329 (365)
157 4a1f_A DNAB helicase, replicat 94.0 0.086 2.9E-06 44.8 5.9 55 95-151 108-164 (338)
158 1oix_A RAS-related protein RAB 92.6 0.065 2.2E-06 40.8 2.8 37 103-141 152-188 (191)
159 1htw_A HI0065; nucleotide-bind 92.3 0.013 4.5E-07 44.2 -1.6 60 3-66 29-96 (158)
160 1sq5_A Pantothenate kinase; P- 91.8 0.0059 2E-07 51.0 -4.4 107 5-128 78-198 (308)
161 1jcn_A Inosine monophosphate d 91.7 0.001 3.5E-08 59.7 -9.8 71 109-182 28-101 (514)
162 1g5t_A COB(I)alamin adenosyltr 91.4 0.24 8.3E-06 38.7 4.8 69 102-170 106-181 (196)
163 2z4s_A Chromosomal replication 91.3 0.11 3.8E-06 45.5 3.0 40 114-153 194-237 (440)
164 2qm8_A GTPase/ATPase; G protei 89.6 0.11 3.8E-06 43.8 1.5 44 95-142 209-258 (337)
165 3t34_A Dynamin-related protein 89.3 0.36 1.2E-05 40.8 4.4 56 95-151 153-212 (360)
166 1fnn_A CDC6P, cell division co 89.0 0.51 1.7E-05 39.5 5.2 47 113-160 124-176 (389)
167 3b9p_A CG5977-PA, isoform A; A 88.1 1.3 4.5E-05 35.8 7.0 56 98-153 97-169 (297)
168 2f9l_A RAB11B, member RAS onco 88.1 0.29 1E-05 37.2 2.8 35 105-141 130-164 (199)
169 3bh0_A DNAB-like replicative h 85.9 0.67 2.3E-05 38.5 4.1 53 97-151 134-189 (315)
170 1jjv_A Dephospho-COA kinase; P 85.7 0.1 3.5E-06 40.1 -1.0 83 76-168 47-132 (206)
171 2qtf_A Protein HFLX, GTP-bindi 85.6 0.34 1.2E-05 41.3 2.2 60 77-141 282-350 (364)
172 3k1j_A LON protease, ATP-depen 85.0 0.2 6.8E-06 45.6 0.4 46 95-141 182-227 (604)
173 1lvg_A Guanylate kinase, GMP k 84.6 0.0035 1.2E-07 48.9 -10.0 55 107-166 116-171 (198)
174 2qby_A CDC6 homolog 1, cell di 81.2 0.58 2E-05 38.9 1.8 45 114-158 128-178 (386)
175 2x8a_A Nuclear valosin-contain 81.2 0.014 4.9E-07 47.9 -8.1 47 93-141 134-192 (274)
176 2z43_A DNA repair and recombin 79.5 2.5 8.6E-05 35.0 5.1 52 103-154 189-259 (324)
177 1u94_A RECA protein, recombina 76.2 6.9 0.00024 33.1 7.0 51 103-153 128-200 (356)
178 1njg_A DNA polymerase III subu 74.5 4 0.00014 30.8 4.7 40 114-154 126-167 (250)
179 2eyu_A Twitching motility prot 74.5 0.008 2.7E-07 49.2 -11.5 33 96-130 172-206 (261)
180 1sxj_D Activator 1 41 kDa subu 68.3 5.3 0.00018 32.7 4.4 40 114-154 133-174 (353)
181 2ewv_A Twitching motility prot 67.8 0.014 4.9E-07 50.1 -11.9 33 96-130 283-317 (372)
182 1v5w_A DMC1, meiotic recombina 66.6 6.7 0.00023 32.8 4.7 52 103-154 204-275 (343)
183 2b8t_A Thymidine kinase; deoxy 65.3 13 0.00046 29.1 6.0 52 114-167 89-150 (223)
184 3szr_A Interferon-induced GTP- 63.8 4.5 0.00015 36.8 3.3 57 94-151 162-223 (608)
185 1l8q_A Chromosomal replication 63.2 8.6 0.00029 31.3 4.7 40 112-151 96-139 (324)
186 2orv_A Thymidine kinase; TP4A 62.2 15 0.00051 29.3 5.7 52 113-167 89-150 (234)
187 3euj_A Chromosome partition pr 61.1 1.3 4.5E-05 39.3 -0.8 30 8-38 30-62 (483)
188 1qhl_A Protein (cell division 60.7 0.73 2.5E-05 36.7 -2.3 25 15-39 34-61 (227)
189 2dy1_A Elongation factor G; tr 56.0 21 0.00073 32.6 6.4 46 109-156 94-139 (665)
190 4ag6_A VIRB4 ATPase, type IV s 54.0 11 0.00039 31.7 4.0 45 113-157 261-311 (392)
191 1xp8_A RECA protein, recombina 53.4 40 0.0014 28.4 7.3 25 103-127 139-165 (366)
192 1xx6_A Thymidine kinase; NESG, 53.4 34 0.0012 26.0 6.3 53 113-167 80-142 (191)
193 3hr8_A Protein RECA; alpha and 51.2 1.1E+02 0.0037 25.7 10.0 66 103-168 126-229 (356)
194 3bos_A Putative DNA replicatio 51.1 11 0.00037 28.6 3.1 41 112-152 102-147 (242)
195 2chg_A Replication factor C sm 50.9 22 0.00074 26.2 4.8 40 113-153 101-142 (226)
196 4fcw_A Chaperone protein CLPB; 50.5 22 0.00076 28.3 5.1 35 107-142 111-146 (311)
197 3bt7_A TRNA (uracil-5-)-methyl 49.7 21 0.00072 29.9 4.9 39 114-157 295-333 (369)
198 2q6t_A DNAB replication FORK h 48.7 34 0.0011 29.4 6.2 55 95-151 263-318 (444)
199 2q6t_A DNAB replication FORK h 48.7 36 0.0012 29.2 6.4 71 95-167 291-396 (444)
200 1jql_B DNA polymerase III, del 47.0 21 0.00073 25.4 4.0 43 109-151 71-114 (140)
201 2w58_A DNAI, primosome compone 46.4 12 0.0004 28.0 2.6 48 112-159 113-166 (202)
202 3kl4_A SRP54, signal recogniti 46.0 32 0.0011 29.9 5.6 38 105-142 170-210 (433)
203 2r8r_A Sensor protein; KDPD, P 45.8 27 0.00092 27.6 4.7 43 108-151 78-125 (228)
204 3h4m_A Proteasome-activating n 44.8 20 0.00067 28.3 3.8 51 105-155 101-168 (285)
205 3lxx_A GTPase IMAP family memb 44.8 30 0.001 26.5 4.9 40 112-151 110-154 (239)
206 1e9r_A Conjugal transfer prote 44.4 9.5 0.00033 32.6 2.0 45 114-158 279-323 (437)
207 1jr3_A DNA polymerase III subu 43.5 29 0.00099 28.4 4.8 41 113-154 118-160 (373)
208 1jr3_D DNA polymerase III, del 43.2 29 0.00099 28.4 4.8 45 108-152 70-116 (343)
209 2qgz_A Helicase loader, putati 43.1 12 0.0004 30.8 2.2 47 112-158 212-264 (308)
210 4a29_A Engineered retro-aldol 42.1 82 0.0028 25.4 7.0 94 74-177 94-190 (258)
211 2qm8_A GTPase/ATPase; G protei 40.7 4.4 0.00015 33.9 -0.7 47 5-52 53-117 (337)
212 3tsm_A IGPS, indole-3-glycerol 39.7 1.4E+02 0.0048 24.0 8.2 64 106-171 134-200 (272)
213 2j9r_A Thymidine kinase; TK1, 39.2 58 0.002 25.4 5.6 52 114-167 101-162 (214)
214 1iy2_A ATP-dependent metallopr 39.0 0.23 7.9E-06 40.2 -8.8 28 94-123 167-194 (278)
215 3cf0_A Transitional endoplasmi 36.7 57 0.002 26.1 5.5 53 104-156 98-167 (301)
216 3hot_A Transposable element ma 36.3 61 0.0021 26.3 5.7 55 70-124 97-159 (345)
217 2jjq_A Uncharacterized RNA met 35.9 83 0.0028 26.9 6.6 41 114-158 353-394 (425)
218 1b9m_A Protein (mode); DNA-bin 35.6 3.8 0.00013 32.6 -1.9 41 76-118 55-95 (265)
219 1ixz_A ATP-dependent metallopr 34.0 0.23 7.9E-06 39.5 -9.4 30 94-125 143-172 (254)
220 1sfl_A 3-dehydroquinate dehydr 33.9 95 0.0032 24.3 6.2 57 95-152 76-134 (238)
221 3llm_A ATP-dependent RNA helic 33.6 70 0.0024 24.4 5.4 62 97-160 161-227 (235)
222 1ega_A Protein (GTP-binding pr 33.5 12 0.00041 30.5 0.8 60 97-163 101-169 (301)
223 3v2d_F 50S ribosomal protein L 33.2 99 0.0034 24.0 6.1 52 103-156 106-164 (210)
224 3co5_A Putative two-component 31.8 87 0.003 21.8 5.2 37 114-151 75-114 (143)
225 1iqp_A RFCS; clamp loader, ext 30.6 64 0.0022 25.5 4.8 40 113-153 109-150 (327)
226 2i1q_A DNA repair and recombin 30.1 39 0.0013 27.4 3.5 64 105-168 192-290 (322)
227 3n70_A Transport activator; si 30.0 66 0.0023 22.5 4.3 37 114-151 76-114 (145)
228 3bgw_A DNAB-like replicative h 29.5 86 0.0029 27.0 5.7 53 97-151 263-318 (444)
229 3d8b_A Fidgetin-like protein 1 28.9 96 0.0033 25.5 5.7 21 103-123 165-185 (357)
230 1i4n_A Indole-3-glycerol phosp 28.9 2.2E+02 0.0074 22.6 7.6 89 74-172 91-183 (251)
231 2ftc_D Mitochondrial ribosomal 28.2 1.2E+02 0.0041 22.8 5.6 47 103-151 74-125 (175)
232 1ne7_A Glucosamine-6-phosphate 28.1 35 0.0012 27.6 2.8 45 95-139 200-259 (289)
233 3lnc_A Guanylate kinase, GMP k 27.6 18 0.0006 27.8 0.8 54 111-164 145-206 (231)
234 1qvr_A CLPB protein; coiled co 27.2 50 0.0017 31.0 4.0 28 113-141 659-686 (854)
235 4dcu_A GTP-binding protein ENG 27.0 55 0.0019 28.1 4.0 57 100-156 88-144 (456)
236 1ls1_A Signal recognition part 26.8 1.8 6.3E-05 35.5 -5.3 39 134-172 26-64 (295)
237 3u61_B DNA polymerase accessor 26.8 68 0.0023 25.7 4.4 40 114-154 105-147 (324)
238 2v1u_A Cell division control p 26.7 40 0.0014 27.4 3.0 41 114-154 130-178 (387)
239 1ojl_A Transcriptional regulat 26.3 1.2E+02 0.0041 24.4 5.7 38 114-152 96-146 (304)
240 1sxj_B Activator 1 37 kDa subu 25.9 58 0.002 25.7 3.7 40 114-154 107-148 (323)
241 1nij_A Hypothetical protein YJ 25.3 12 0.00041 30.7 -0.6 31 8-38 4-45 (318)
242 1q57_A DNA primase/helicase; d 24.9 2E+02 0.0067 24.8 7.2 49 104-153 342-404 (503)
243 1ypw_A Transitional endoplasmi 24.8 60 0.002 30.4 4.0 55 103-157 286-354 (806)
244 4e22_A Cytidylate kinase; P-lo 24.6 8.7 0.0003 30.4 -1.5 32 6-37 26-62 (252)
245 1dmg_A Ribosomal protein L4; a 24.1 1.2E+02 0.0041 23.8 5.1 48 103-152 105-158 (225)
246 1i1q_B Anthranilate synthase c 23.9 1.9E+02 0.0065 21.2 6.2 33 115-152 1-33 (192)
247 3q58_A N-acetylmannosamine-6-p 23.9 1.7E+02 0.0057 22.7 6.0 50 108-158 95-144 (229)
248 1a5t_A Delta prime, HOLB; zinc 23.7 66 0.0023 26.2 3.7 41 113-154 107-149 (334)
249 2orw_A Thymidine kinase; TMTK, 23.6 35 0.0012 25.4 1.9 53 113-167 75-137 (184)
250 2vp4_A Deoxynucleoside kinase; 23.5 28 0.00096 26.8 1.3 33 2-38 15-49 (230)
251 2qz4_A Paraplegin; AAA+, SPG7, 23.3 1.4E+02 0.0049 22.6 5.5 21 105-125 89-109 (262)
252 3f6c_A Positive transcription 23.3 1.6E+02 0.0055 19.2 5.6 38 112-152 44-83 (134)
253 1svm_A Large T antigen; AAA+ f 23.0 1.2 4.1E-05 38.2 -7.3 33 93-125 279-312 (377)
254 3syl_A Protein CBBX; photosynt 22.9 2.7E+02 0.0092 21.7 7.5 38 114-151 130-177 (309)
255 3m6y_A 4-hydroxy-2-oxoglutarat 22.8 15 0.00053 29.6 -0.4 66 73-144 170-236 (275)
256 3igs_A N-acetylmannosamine-6-p 22.8 1.8E+02 0.0061 22.6 6.0 50 108-158 95-144 (232)
257 3m0z_A Putative aldolase; MCSG 21.9 15 0.00051 29.3 -0.6 67 73-145 147-214 (249)
258 3io5_A Recombination and repai 21.6 3.4E+02 0.011 22.6 7.6 56 99-154 92-173 (333)
259 3r8n_M 30S ribosomal protein S 21.5 2.1E+02 0.0072 19.9 6.2 49 55-106 8-56 (114)
260 4b4t_L 26S protease subunit RP 21.3 2E+02 0.007 24.8 6.5 55 103-157 263-334 (437)
261 3qja_A IGPS, indole-3-glycerol 20.9 2.9E+02 0.0098 22.0 6.9 59 107-168 128-190 (272)
262 1jbk_A CLPB protein; beta barr 20.5 44 0.0015 23.8 1.8 42 113-154 114-162 (195)
263 3cmw_A Protein RECA, recombina 20.1 2.4E+02 0.0083 29.0 7.5 48 105-152 450-519 (1706)
264 2gno_A DNA polymerase III, gam 20.1 75 0.0026 25.8 3.3 40 114-154 82-123 (305)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.5e-38 Score=276.14 Aligned_cols=174 Identities=22% Similarity=0.297 Sum_probs=148.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ +++|||+||++. +++.+|+.+++
T Consensus 50 ~i~~Gei~~Ii-GpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~--l~~~~TV~env 126 (366)
T 3tui_C 50 HVPAGQIYGVI-GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNV 126 (366)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC--CCTTSCHHHHH
T ss_pred EEcCCCEEEEE-cCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc--cCCCCCHHHHH
Confidence 35678888888 554 5999999 9999999999998643 236999999975 88999999998
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.+. +++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l 205 (366)
T 3tui_C 127 ALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205 (366)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 632 33332 356789999999887765 8899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||+||||++.+.++||++++|++|+++. .|+..++
T Consensus 206 L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~~ev 251 (366)
T 3tui_C 206 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEV 251 (366)
T ss_dssp HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBHHHH
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 8764 6799999999999999999999999999975 6766554
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-38 Score=262.09 Aligned_cols=172 Identities=23% Similarity=0.270 Sum_probs=142.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||+||++. +++.+|+.++
T Consensus 27 ~i~~Ge~~~ii-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~en 103 (235)
T 3tif_A 27 NIKEGEFVSIM-GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALEN 103 (235)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC--CCTTSCHHHH
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc--cCCCCcHHHH
Confidence 35678888999 554 5999999 9999999999998653 125999999975 7888999999
Q ss_pred HHhh---c---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 65 LMKL---F---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 65 ~~~~---~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+... . ... .+++.++++.+++.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 8632 1 222 23466789999998754234899999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 135 LAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 135 l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
+.++|+++ +.|||+||||++.+ ++||++++|++|+++. .++..
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~ 230 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLR 230 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChh
Confidence 99999764 67999999999965 7899999999999975 34433
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.1e-38 Score=263.13 Aligned_cols=175 Identities=26% Similarity=0.330 Sum_probs=148.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+++.
T Consensus 46 ~i~~Gei~~li-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~l~ 122 (263)
T 2olj_A 46 HIREGEVVVVI-GPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN--LFPHMTVLNNIT 122 (263)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCC--CCTTSCHHHHHH
T ss_pred EEcCCCEEEEE-cCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCc--CCCCCCHHHHHH
Confidence 45678888999 554 5999999 9999999999998643 124999999874 788899999886
Q ss_pred hh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~ 201 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 42 2333 2346789999999877664 8899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||+||||++++.++||++++|++|+++. .|+.+++.
T Consensus 202 l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 247 (263)
T 2olj_A 202 MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9765 5799999999999999999999999999864 56766553
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-38 Score=262.44 Aligned_cols=174 Identities=25% Similarity=0.364 Sum_probs=147.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHL 55 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l 55 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +
T Consensus 28 ~i~~Ge~~~li-G~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l 104 (262)
T 1b0u_A 28 QARAGDVISII-GSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--L 104 (262)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC--C
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcc--c
Confidence 45678889999 554 5999999 9999999999997643 124999999864 7
Q ss_pred CCCCCHHHHHHhh----cCCC----HHHHHHHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q psy2681 56 FPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126 (211)
Q Consensus 56 ~~~~t~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g 126 (211)
++.+|+.+++... .+.. .+++.++++.+|+.+. .++ ++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 183 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8889999988642 2333 2346789999999876 664 8899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 127 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 127 LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999998765 5799999999999999999999999999874 5666654
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.6e-38 Score=271.69 Aligned_cols=176 Identities=21% Similarity=0.277 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++--. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +|+.+|+.+|+..
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~--l~p~ltV~eni~~ 103 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV--LFPHLTVYRNIAY 103 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC--CCTTSCHHHHHHT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc--CCCCCCHHHHHHH
Confidence 356678888884443 4999999 9999999999997532 246999999975 8999999999974
Q ss_pred hc---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 LF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. +.. .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|.
T Consensus 104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 104 GLGNGKGRTAQERQRIEAMLELTGISELAGR-YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 32 111 2457789999999987775 889999999999999999999999999999999999999999887654
Q ss_pred h----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 N----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ .+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 183 ~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp HHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHH
Confidence 3 47799999999999999999999999999975 57776654
No 6
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-38 Score=259.14 Aligned_cols=173 Identities=24% Similarity=0.330 Sum_probs=145.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
+.. ..+.++ |-+ ++|||++ ++|+++|++|+|..++ ++.+||+||++. +++.+|+.+++......
T Consensus 22 i~~-e~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~ 97 (240)
T 2onk_A 22 MGR-DYCVLL-GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPHLSVYRNIAYGLRN 97 (240)
T ss_dssp ECS-SEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC--CCTTSCHHHHHHTTCTT
T ss_pred ECC-EEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCc--cCCCCcHHHHHHHHHHH
Confidence 344 567777 554 5999999 9999999999998643 346999999875 78889999998643211
Q ss_pred -----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 72 -----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 72 -----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
..+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.++|+++
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~ 176 (240)
T 2onk_A 98 VERVERDRRVREMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF 176 (240)
T ss_dssp SCHHHHHHHHHHHHHTTTCTTTTTC-CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 13456789999999877664 88999999999999999999999999999999999999999999999764
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 177 g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 215 (240)
T 2onk_A 177 DVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 5799999999999999999999999999864 56766553
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.7e-38 Score=272.42 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=149.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |=. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+...
T Consensus 25 ~i~~Ge~~~ll-GpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~--l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 25 DIHEGEFVVFV-GPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA--LYPHLSVAENMSFGLK 101 (381)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCC--CCTTSCHHHHHTHHHH
T ss_pred EECCCCEEEEE-cCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCc--CCCCCCHHHHHHHHHH
Confidence 35667888888 554 5999999 9999999999998643 246999999975 89999999998632
Q ss_pred -cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.+. +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 102 LAGAKKEVINQRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTC-CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 23332 456789999999887765 88999999999999999999999999999999999999999999988754
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|+..++.
T Consensus 181 ~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~ 222 (381)
T 3rlf_A 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (381)
T ss_dssp HHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 6799999999999999999999999999975 56766643
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.8e-38 Score=264.27 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=146.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++...++ .+|+.+++.
T Consensus 30 ~i~~Ge~~~ii-GpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~ 107 (275)
T 3gfo_A 30 NIKRGEVTAIL-GGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVS 107 (275)
T ss_dssp EEETTSEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHH
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHH
Confidence 35668888888 554 5999999 9999999999998653 2359999998742334 689999886
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.+. +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 108 FGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 32 23332 356789999999877664 88999999999999999999999999999999999999999999998
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+++ +.|||+||||++++..+||++++|++|+++. .|+..++.
T Consensus 187 ~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 232 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVF 232 (275)
T ss_dssp HHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE-EECHHHHT
T ss_pred HHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 754 5699999999999999999999999999974 67776653
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-37 Score=269.19 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=149.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+.....
T Consensus 25 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 25 EVKDGEFVALL-GPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA--LYPHMTVFENIAFPLR 101 (359)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCC--CCTTSCHHHHHHGGGS
T ss_pred EEcCCCEEEEE-cCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 35677888888 554 5999999 9999999999998643 246999999975 7899999999975322
Q ss_pred ---CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 71 ---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 71 ---~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.. .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (359)
T 2yyz_A 102 ARRISKDEVEKRVVEIARKLLIDNLLDR-KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180 (359)
T ss_dssp SSCSHHHHTTHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 21 2357789999999887765 88999999999999999999999999999999999999999999988764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 181 ~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 6799999999999999999999999999975 57776653
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.1e-37 Score=261.00 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=151.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++.++|++|++. +++.+|+.+++...
T Consensus 33 ~i~~Ge~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~ 109 (266)
T 4g1u_C 33 HIASGEMVAII-GPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE--LAFPFSVSEVIQMG 109 (266)
T ss_dssp EEETTCEEEEE-CCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC--CCSCCBHHHHHHGG
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc--cCCCCCHHHHHHhh
Confidence 35678889999 554 5999999 9999999999998653 135999999875 66779999998643
Q ss_pred cC-----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 FN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.. ...+++.++++.+++.+..++ ++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.+
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~ 188 (266)
T 4g1u_C 110 RAPYGGSQDRQALQQVMAQTDCLALAQR-DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188 (266)
T ss_dssp GTTSCSTTHHHHHHHHHHHTTCSTTTTS-BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence 21 124567889999999887765 789999999999999999999 999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhh
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLG 190 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~ 190 (211)
+|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.. ..+..++
T Consensus 189 ~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~-~g~~~~~~~~~~l~~~~ 245 (266)
T 4g1u_C 189 LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA-CGTPEEVLNAETLTQWY 245 (266)
T ss_dssp HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHCCHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-EcCHHHHhCcHHHHHHh
Confidence 99765 3499999999999999999999999999974 677776542 3344444
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.4e-38 Score=255.20 Aligned_cols=167 Identities=21% Similarity=0.280 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +..++|+||++. +++.+|+.+++
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l 103 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY--LIPELTALENV 103 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC--CCTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc--cCCCCCHHHHH
Confidence 456788888884443 5999999 9999999999997643 135999999874 78889999988
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 532 2322 2346789999999887765 8899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 183 l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp HHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 8765 57999999999998 7999999999999864
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-37 Score=268.82 Aligned_cols=175 Identities=26% Similarity=0.342 Sum_probs=148.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+
T Consensus 27 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni 103 (353)
T 1oxx_K 27 NIENGERFGIL-GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA--LYPNLTAFENI 103 (353)
T ss_dssp EECTTCEEEEE-CSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC--CCTTSCHHHHH
T ss_pred EECCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc--cCCCCCHHHHH
Confidence 35667888888 665 5999999 9999999999997532 246999999975 88999999998
Q ss_pred Hhhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.... +.. .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 182 (353)
T 1oxx_K 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182 (353)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 7532 223 2356789999999887765 8899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 183 l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 8754 6799999999999999999999999999975 56766653
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-37 Score=269.88 Aligned_cols=175 Identities=25% Similarity=0.334 Sum_probs=148.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..+. ++.+||+||++. +++.+|+.+|+...
T Consensus 37 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 37 QIREGEMVGLL-GPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA--LFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGC--CCTTSCHHHHHHHHHH
T ss_pred EECCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 35567888888 554 5999999 9999999999998643 346999999875 88999999998642
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.+ .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 114 EKRVPKDEMDARVRELLRFMRLESYANR-FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 2333 2356789999999887765 88999999999999999999999999999999999999999999988754
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 193 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 193 DEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp HHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 57766653
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-37 Score=257.69 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+++...
T Consensus 37 ~i~~Gei~~l~-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 37 EIEEGEIFGLI-GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVA 113 (256)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC--CCTTSBHHHHHHHHH
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCC--CCCCCcHHHHHHHHH
Confidence 35678888888 554 5999999 9999999999998653 235999999875 67888999988532
Q ss_pred --cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
++... +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 114 GFYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHCCGGGGGS-BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHCCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 23332 356788999999877665 78999999999999999999999999999999999999999999999765
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 193 ~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 234 (256)
T 1vpl_A 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 234 (256)
T ss_dssp HHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred HhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHH
Confidence 5799999999999999999999999999864 56666553
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.1e-37 Score=267.96 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=148.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+...
T Consensus 22 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 22 KVESGEYFVIL-GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMR 98 (348)
T ss_dssp EECTTCEEEEE-CCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC--CCTTSCHHHHHHHHHH
T ss_pred EEcCCCEEEEE-CCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 45677888888 555 4999999 9999999999998654 235999999875 88999999998642
Q ss_pred -cCC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 69 -FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 69 -~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
.+. ..+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~ 177 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc
Confidence 122 23668889999999987765 88999999999999999999999999999999999999999999998764
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++
T Consensus 178 g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 215 (348)
T 3d31_A 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEI 215 (348)
T ss_dssp TCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 6799999999999999999999999999975 5666654
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-37 Score=256.29 Aligned_cols=175 Identities=19% Similarity=0.246 Sum_probs=146.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ +..+||+||++. +++.+|+.+++..
T Consensus 28 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~ 104 (240)
T 1ji0_A 28 KVPRGQIVTLI-GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMM 104 (240)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC--CCTTSBHHHHHHG
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc--cCCCCcHHHHHHH
Confidence 45678888888 554 5999999 9999999999998643 124999999874 7888999999864
Q ss_pred hc--CC--C--HHHHHHHHHhCC-CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 LF--NL--P--YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~~--~~--~--~~~~~~~l~~~g-l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. .. . .+.+.++++.++ +.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 105 GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ-LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp GGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS-BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcccHhhHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 32 11 1 234677899994 8776664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||+||||++++.++||++++|++|+++. .|+..++.
T Consensus 184 ~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 65 5699999999999999999999999999864 56666553
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-37 Score=268.60 Aligned_cols=175 Identities=23% Similarity=0.278 Sum_probs=149.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+...
T Consensus 25 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 25 KIKDGEFMALL-GPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA--LYPHMTVYKNIAFPLE 101 (362)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCC--CCTTSCHHHHHHHHHH
T ss_pred EECCCCEEEEE-CCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 35677888888 554 5999999 9999999999998643 246999999975 88999999998642
Q ss_pred -cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+... +++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 102 LRKAPREEIDKKVREVAKMLHIDKLLNR-YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 23332 356789999999987765 88999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 181 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 181 KELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 57766653
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.4e-37 Score=268.66 Aligned_cols=176 Identities=21% Similarity=0.268 Sum_probs=144.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.+++--. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~ 110 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKI 110 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHHHHHTTCC-
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHh
Confidence 456778888883333 5999999 9999999999998643 246999999875 789999999997532
Q ss_pred -CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+... +++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTS-CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 2232 356789999999887765 78999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 190 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 6799999999999999999999999999975 57766653
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-37 Score=258.85 Aligned_cols=173 Identities=17% Similarity=0.197 Sum_probs=146.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ +..+||+||++. +++.+|+.+++..
T Consensus 29 ~i~~Ge~~~li-G~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~ 105 (257)
T 1g6h_A 29 SVNKGDVTLII-GPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ--PLKEMTVLENLLI 105 (257)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG--GGGGSBHHHHHHG
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCc--cCCCCcHHHHHHH
Confidence 45678888999 554 5999999 9999999999998643 125999999874 6788999999864
Q ss_pred hc-----C-----------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 68 LF-----N-----------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 68 ~~-----~-----------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
.. + .. .+++.++++.+|+++..++ ++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 184 (257)
T 1g6h_A 106 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184 (257)
T ss_dssp GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC-CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 21 1 11 2346789999999877664 78999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 128 DIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 128 D~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
|+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.++
T Consensus 185 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 999999999999765 6799999999999999999999999999864 466555
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.6e-37 Score=256.98 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=144.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc----C----C
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N----L 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~----~----~ 71 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|.. +..+||+||++. +++.+|+.+++.... + .
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~I~~--~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~ 101 (253)
T 2nq2_C 27 DLNKGDILAVL-GQNGCGKSTLLDLLLGIHRPIQGKIEV--YQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKP 101 (253)
T ss_dssp EEETTCEEEEE-CCSSSSHHHHHHHHTTSSCCSEEEEEE--CSCEEEECSCCC--CSSCCBHHHHHHGGGGGGSCTTCCC
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEE--eccEEEEcCCCc--cCCCCCHHHHHHHhhhhhcccccCC
Confidence 35677888888 554 5999999 99999999999983 357999999875 677889999986421 1 1
Q ss_pred C---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CC
Q psy2681 72 P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QG 144 (211)
Q Consensus 72 ~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~ 144 (211)
. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 180 (253)
T 2nq2_C 102 KSHDYQVAMQALDYLNLTHLAKR-EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180 (253)
T ss_dssp CHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHcCChHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2 2356789999999877664 78999999999999999999999999999999999999999999999765 57
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|||++|||++++..+||++++|++|+ + ..|+.+++
T Consensus 181 tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 181 TVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp EEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 99999999999999999999999999 5 35666655
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.7e-37 Score=267.96 Aligned_cols=175 Identities=22% Similarity=0.321 Sum_probs=148.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|
T Consensus 25 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~en 101 (372)
T 1g29_1 25 EVKDGEFMILL-GPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--LYPHMTVYDN 101 (372)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC--CCTTSCHHHH
T ss_pred EEcCCCEEEEE-CCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCc--cCCCCCHHHH
Confidence 35667888888 554 5999999 9999999999997532 235999999975 8899999999
Q ss_pred HHhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+... +++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 102 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 180 (372)
T 1g29_1 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180 (372)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 8642 23332 356789999999887765 889999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 181 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 88754 6799999999999999999999999999974 57776653
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.9e-37 Score=255.10 Aligned_cols=176 Identities=26% Similarity=0.320 Sum_probs=147.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. ..++.+|+.+++....
T Consensus 29 ~i~~Ge~~~li-G~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 29 VINEGECLLVA-GNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPE-DQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGG-GGCCCSSHHHHHHHTTTT
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccch-hhcCCCcHHHHHHHHHHh
Confidence 45678888899 554 5999999 9999999999998754 245999999852 1355689999986421
Q ss_pred --C--CCHHHHHHHHHhCCCC--CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --N--LPYEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~--~~~~~~~~~l~~~gl~--~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. ...+++.++++.+|+. +..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDR-VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TCTTSCSHHHHHHHHHHTTCCHHHHTTC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCcccccC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 1 1245678899999998 76664 78999999999999999999999999999999999999999999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+..++.
T Consensus 186 ~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 226 (266)
T 2yz2_A 186 TLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEFL 226 (266)
T ss_dssp HTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHHH
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 5799999999999999999999999999864 56665543
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-36 Score=252.18 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=147.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|+ |+|..++ +..++|++|++. +++.+|+.+++...
T Consensus 22 ~i~~Ge~~~li-G~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 22 EVRAGEILHLV-GPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT--PPFATPVWHYLTLH 97 (249)
T ss_dssp EEETTCEEEEE-CCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC--CCTTCBHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc--cCCCCcHHHHHHHh
Confidence 35677888888 554 5999999 99999999 9998654 135999999975 67888999998643
Q ss_pred c--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC-------eEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD-------ILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~-------lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. ....+.+.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+.+.|
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 98 QHDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176 (249)
T ss_dssp CSSTTCHHHHHHHHHHTTCGGGTTS-BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred hccCCcHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence 1 1235678889999999877665 789999999999999999999999 99999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 177 ~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 220 (249)
T 2qi9_C 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEV 220 (249)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 765 5799999999999999999999999999864 5666655
No 24
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-36 Score=252.00 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=146.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEE-EEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIG-KFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig-~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+. |..+.++ |-+ ++|||++ |+|++ |++|+|..+. ++.++ |+||++. + .+|+.+++...
T Consensus 27 ~i~-Ge~~~i~-G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~--l--~~tv~enl~~~~~ 99 (263)
T 2pjz_A 27 EVN-GEKVIIL-GPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE--I--GVTVNDIVYLYEE 99 (263)
T ss_dssp EEC-SSEEEEE-CCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSC--T--TSBHHHHHHHHHH
T ss_pred EEC-CEEEEEE-CCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCc--c--CCcHHHHHHHhhh
Confidence 456 7888888 554 5999999 99999 9999998654 33699 9999875 4 78999988642
Q ss_pred -cCCCHHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q psy2681 69 -FNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ti 146 (211)
+....+++.++++.+|+. +..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++..||
T Consensus 100 ~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tv 178 (263)
T 2pjz_A 100 LKGLDRDLFLEMLKALKLGEEILRR-KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178 (263)
T ss_dssp HTCCCHHHHHHHHHHTTCCGGGGGS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEE
T ss_pred hcchHHHHHHHHHHHcCCChhHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcE
Confidence 234566788999999998 76664 789999999999999999999999999999999999999999999999885699
Q ss_pred EEEecChHHHHhhCC-eEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~-~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+||||++++.++|| ++++|++|+++. .|+.+++.
T Consensus 179 iivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 179 ILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp EEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999 999999999864 56666543
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.7e-37 Score=258.75 Aligned_cols=177 Identities=20% Similarity=0.279 Sum_probs=145.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||++|++...++..+|+.+++.
T Consensus 43 ~i~~Ge~~~li-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~ 121 (279)
T 2ihy_A 43 QIAKGDKWILY-GLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121 (279)
T ss_dssp EEETTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Confidence 45678888999 554 5999999 9999999999998653 13599999986422334569999986
Q ss_pred hhc-------C-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 67 KLF-------N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 67 ~~~-------~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
... + .. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l 200 (279)
T 2ihy_A 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESL 200 (279)
T ss_dssp TTC---------CCHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHH
Confidence 421 1 12 2346788999999877664 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeE--EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 136 AEAIKNY---QGGV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 136 ~~~l~~~---~~ti--iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+++|+++ +.|| |+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 201 ~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 251 (279)
T 2ihy_A 201 LSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVEDIL 251 (279)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHHHC
T ss_pred HHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999765 5799 999999999999999999999999864 56666653
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-35 Score=246.14 Aligned_cols=173 Identities=23% Similarity=0.323 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||+||++. +++ .|+.+++...
T Consensus 31 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 31 SIKQGEVIGIV-GRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV--LLN-RSIIDNISLA 106 (247)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--CTT-SBHHHHHTTT
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc--ccc-ccHHHHHhcc
Confidence 45678888888 554 5999999 9999999999998653 235999999875 554 5999998643
Q ss_pred c-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ....+++.++++.+++.+...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 2 2345556667777776543321 2468999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|+++ +.|||+||||++.+.. ||++++|++|+++. .|+.+++
T Consensus 187 ~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l 230 (247)
T 2ff7_A 187 NMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKEL 230 (247)
T ss_dssp HHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHH
Confidence 99876 6799999999998864 99999999999874 5666554
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.9e-35 Score=247.98 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=140.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|+||++. +++ .|+.+++...
T Consensus 41 ~i~~Ge~~~i~-G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~ 116 (271)
T 2ixe_A 41 TLYPGKVTALV-GPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL--LFG-RSFRENIAYG 116 (271)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--CCS-SBHHHHHHTT
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc--ccc-ccHHHHHhhh
Confidence 35678888888 554 5999999 9999999999998653 235999999975 565 5999998643
Q ss_pred cC-CCH-HH---------HHHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 69 FN-LPY-EK---------SRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 69 ~~-~~~-~~---------~~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.. ... .. +.++++.+ |+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 117 LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp CSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 21 111 11 23457777 67766654 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 136 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+.|+++ +.|||+||||++++.. ||++++|++|+++. .|+.+++.
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 9999876 4699999999999875 99999999999864 57776654
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-35 Score=245.16 Aligned_cols=176 Identities=24% Similarity=0.276 Sum_probs=143.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +..++|+||++. +++ .|+.+++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~ 100 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA--IMA-GTIRENLTYGL 100 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC--CCC-EEHHHHTTSCT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCc--ccc-ccHHHHHhhhc
Confidence 456778888884443 5999999 9999999999997642 345999999975 565 5999998643
Q ss_pred -cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.....+.+.++++.+++.+..++ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~ 180 (243)
T 1mv5_A 101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180 (243)
T ss_dssp TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 22345667788888888765432 2467999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|+++ +.|||+||||++.+. .||++++|++|+++. .|+..++..
T Consensus 181 ~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 226 (243)
T 1mv5_A 181 ALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGKHNELVA 226 (243)
T ss_dssp HHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSCHHHHHH
T ss_pred HHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99765 679999999999886 599999999999864 677776543
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.2e-35 Score=246.12 Aligned_cols=174 Identities=20% Similarity=0.289 Sum_probs=141.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCc--ccCCcceEEecCC------------eEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGE--LTPNKGELRKSPR------------LRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||+| |+|+ .+|++|+|..++. ..++|++|++. +++.+|+.+++
T Consensus 42 ~i~~Ge~~~l~-G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~~ 118 (267)
T 2zu0_C 42 DVHPGEVHAIM-GPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV--EIPGVSNQFFL 118 (267)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC--CCTTCBHHHHH
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc--ccccccHHHHH
Confidence 45678888888 554 5999999 9999 4789999986531 23999999975 68888998877
Q ss_pred Hhh-------cC---CCH----HHHHHHHHhCCCCC-ccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 66 MKL-------FN---LPY----EKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 66 ~~~-------~~---~~~----~~~~~~l~~~gl~~-~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
... .. ... +++.++++.+|+.. ..+ +++. +|||||||||+|||||+.+|++|||||||+|||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT-RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT-SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 421 11 122 34678899999964 444 4676 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+.+++
T Consensus 198 ~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 198 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLV 252 (267)
T ss_dssp HHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999876 46999999999999886 89999999999974 5665544
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.6e-35 Score=249.36 Aligned_cols=174 Identities=21% Similarity=0.273 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..++ +..|||+||++. +| ..|+.+|+...
T Consensus 76 ~i~~Ge~vaiv-G~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Tv~eNi~~~ 151 (306)
T 3nh6_A 76 TVMPGQTLALV-GPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV--LF-NDTIADNIRYG 151 (306)
T ss_dssp EECTTCEEEEE-SSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC--CC-SEEHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc--cC-cccHHHHHHhh
Confidence 35678889999 555 4999999 9999999999998754 346999999975 55 46999998743
Q ss_pred c-CCCHHHHHHHHHhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ......+.++++.+++. ..... +..+|||||||||+|||||+.+|++|||||||++||+.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~ 230 (306)
T 3nh6_A 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230 (306)
T ss_dssp STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH
Confidence 2 23445555555555443 23333 56799999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.++ +.|+|+|||+++.+.. ||+|++|++|+++. .|+.+++.+
T Consensus 231 ~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 231 ASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp HHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999875 5799999999999987 99999999999975 678777654
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-34 Score=237.55 Aligned_cols=171 Identities=24% Similarity=0.291 Sum_probs=135.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +++|+||++. +++. |+.+++............+.+
T Consensus 31 i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~ 104 (229)
T 2pze_A 31 IERGQLLAVA-GSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--IMPG-TIKENIIFGVSYDEYRYRSVI 104 (229)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--CCSB-CHHHHHHTTSCCCHHHHHHHH
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--ccCC-CHHHHhhccCCcChHHHHHHH
Confidence 4567888888 554 5999999 9999999999999876 5999999975 5664 999998753322333344455
Q ss_pred HhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeEE
Q psy2681 81 GMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~tii 147 (211)
+.+++.+... .+++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+ .++ +.|||
T Consensus 105 ~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi 184 (229)
T 2pze_A 105 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184 (229)
T ss_dssp HHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEE
T ss_pred HHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 5555432111 1245899999999999999999999999999999999999999999974 443 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+||||++++. .||++++|++|+++. .|+.+++.
T Consensus 185 ~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 185 LVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 217 (229)
T ss_dssp EECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999986 599999999999864 56766543
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-35 Score=244.95 Aligned_cols=172 Identities=19% Similarity=0.288 Sum_probs=137.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCc--ccCCcceEEecCC------------eEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGE--LTPNKGELRKSPR------------LRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+ ++|++|+|..++. ..++|++|++. +++.+|+.+++
T Consensus 25 ~i~~Ge~~~l~-G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l 101 (250)
T 2d2e_A 25 VVPKGEVHALM-GPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPV--EVPGVTIANFL 101 (250)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC---CCSCBHHHHH
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc--cccCCCHHHHH
Confidence 45678888888 554 5999999 9998 7899999986531 23789999875 67889999987
Q ss_pred Hhh----cC--CC----HHHHHHHHHhCCCC-CccccCCCCC-CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 66 MKL----FN--LP----YEKSRRQLGMFGLP-SYAHTIPIRD-LSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 66 ~~~----~~--~~----~~~~~~~l~~~gl~-~~~~~~~~~~-LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
... .+ .. .+++.++++.+|++ +..+ +++.+ |||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 102 RLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 531 12 12 23467889999995 5555 47888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~ 179 (211)
.+.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+.+
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 999999876 46999999999999888 59999999999874 56655
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-35 Score=240.83 Aligned_cols=163 Identities=21% Similarity=0.230 Sum_probs=135.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~- 69 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ +..++|+||++. +++.+|+.+++... +
T Consensus 31 ~i~~Ge~~~ii-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 31 TIEKGNVVNFH-GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EEETTCCEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc--CCCCCCHHHHHHHHHHhcC
Confidence 35677888888 554 5999999 9999999999998764 246999999975 67888999988532 1
Q ss_pred -CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
....+++.++++.+|++.. + +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|
T Consensus 108 ~~~~~~~~~~~l~~~gl~~~-~-~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 108 VKVNKNEIMDALESVEVLDL-K-KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp CCCCHHHHHHHHHHTTCCCT-T-SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred CchHHHHHHHHHHHcCCCcC-C-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 2235667889999999877 5 478999999999999999999999999999999999999999999999765 469
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
||++|||++++..+|++++. ..|++
T Consensus 186 iiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 186 VIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp EEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred EEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999998887763 34544
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=238.37 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=135.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ .++|+||++. ++..|+.+++............+++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~---~~~~tv~enl~~~~~~~~~~~~~~~ 101 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW---IQNDSLRENILFGCQLEEPYYRSVI 101 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC---CCSEEHHHHHHTTSCCCTTHHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc---CCCcCHHHHhhCccccCHHHHHHHH
Confidence 356778888884443 5999999 9999999999999876 5999999874 3578999998653222222233333
Q ss_pred HhCCCC------C-----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---hc--CC
Q psy2681 81 GMFGLP------S-----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NY--QG 144 (211)
Q Consensus 81 ~~~gl~------~-----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---~~--~~ 144 (211)
+.+++. + ... +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|. ++ +.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~ 180 (237)
T 2cbz_A 102 QACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180 (237)
T ss_dssp HHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTS
T ss_pred HHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCC
Confidence 333321 1 123 4789999999999999999999999999999999999999999999984 32 56
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 181 tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 216 (237)
T 2cbz_A 181 TRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQELL 216 (237)
T ss_dssp EEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHHh
Confidence 9999999999875 699999999999864 57766653
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.2e-34 Score=237.91 Aligned_cols=173 Identities=22% Similarity=0.263 Sum_probs=139.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| +|+|..++ +..++|+||++. +++ .|+.+++...
T Consensus 42 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 42 FIPSGTTCALV-GHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI--LFN-ETIKYNILYG 116 (260)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC--CCS-EEHHHHHHTT
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc--ccc-cCHHHHHhcc
Confidence 35678888888 554 5999999 9999987 89998653 235999999975 554 5999998642
Q ss_pred c-CCCHHHHHHHHHhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ....+++.++++.+++.+... .+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 2 234455667777777643211 13578999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 197 ~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 241 (260)
T 2ghi_A 197 AVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLL 241 (260)
T ss_dssp HHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99876 569999999999886 599999999999874 57776654
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=249.43 Aligned_cols=173 Identities=20% Similarity=0.218 Sum_probs=145.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+++ ++|+|..+. ++.+||+||++. +|+ +|+.+|+....
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~--lf~-~tv~enl~~~~ 118 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF--IFS-GTFRKNLDPNA 118 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCC--CCS-EEHHHHHCTTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcc--cCc-cCHHHHhhhcc
Confidence 356778888884443 4999999 999998 899998654 246999999975 565 69999986444
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCC-----------CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
....+++.++++.+++.+..++ ++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~~~-~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVIEQ-FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHHTT-STTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCHHHHhh-cccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 4556778899999999877765 6677 999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|++. +.|+|+||||++.+ ..||++++|++|+++. .|++.++.
T Consensus 198 l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 198 LKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp HHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE-ESSHHHHH
T ss_pred HHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9876 56999999998765 4699999999999975 57776654
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.2e-33 Score=235.80 Aligned_cols=172 Identities=23% Similarity=0.290 Sum_probs=134.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..+. +++|+||++. +++ .|+.+++. ..........+.+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~-~tv~enl~-~~~~~~~~~~~~~ 133 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--IMP-GTIKENII-GVSYDEYRYRSVI 133 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--CCS-SBHHHHHH-TTCCCHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--cCc-ccHHHHhh-CcccchHHHHHHH
Confidence 456788889994443 5999999 9999999999999876 5999999875 566 49999987 3222333344555
Q ss_pred HhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeEE
Q psy2681 81 GMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~tii 147 (211)
+.+++.+.... +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.+ .++ +.|||
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tvi 213 (290)
T 2bbs_A 134 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213 (290)
T ss_dssp HHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEE
T ss_pred HHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 55665322111 135799999999999999999999999999999999999999999974 343 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 214 ivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 246 (290)
T 2bbs_A 214 LVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (290)
T ss_dssp EECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHH
T ss_pred EEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHh
Confidence 9999999986 599999999999864 57776653
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.5e-32 Score=252.06 Aligned_cols=175 Identities=22% Similarity=0.252 Sum_probs=144.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.++||+||++. +++ .|+.+|+....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~ 441 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH--LFN-DTIANNIAYAA 441 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc--ccc-ccHHHHHhccC
Confidence 456788899994443 5999999 9999999999998653 346999999975 565 59999987432
Q ss_pred --CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 --NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 --~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.+.+++.++++.+++.+...+ .+..+||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521 (582)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 3456677788888877543322 1457999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++.
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 522 ALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred HHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99876 579999999999986 699999999999975 67777654
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-32 Score=250.68 Aligned_cols=172 Identities=25% Similarity=0.281 Sum_probs=142.6
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-c-C-CCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F-N-LPYEKSR 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~-~-~~~~~~~ 77 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.. ...++|++|++. .++.+|+.+++... . . ...+.+.
T Consensus 309 i~~Ge~~~i~-G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~ 383 (538)
T 1yqt_A 309 IKKGEVIGIV-GPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKT 383 (538)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHH
Confidence 4578899999 665 5999999 99999999999976 347999999875 45678888776532 1 1 1345577
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~ 153 (211)
++++.+++.+..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||+
T Consensus 384 ~~l~~~~l~~~~~-~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 384 ELLKPLGIIDLYD-REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp HTTTTTTCGGGTT-SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 8999999986665 489999999999999999999999999999999999999999999998764 67999999999
Q ss_pred HHHHhhCCeEEEEeC--CceeeecCChHHHH
Q psy2681 154 RLIRETDCELWALEK--KNIRKFNGDFDDYR 182 (211)
Q Consensus 154 ~~~~~~~~~v~~l~~--g~i~~~~g~~~~~~ 182 (211)
+++..+||++++|++ |.+. ..|++.++.
T Consensus 463 ~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~ 492 (538)
T 1yqt_A 463 LMIDYVSDRLMVFEGEPGKYG-RALPPMGMR 492 (538)
T ss_dssp HHHHHHCSEEEEEEEETTTEE-EECCCEEHH
T ss_pred HHHHHhCCEEEEEeCCcceEe-ecCCHHHHH
Confidence 999999999999986 5554 346665544
No 40
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-32 Score=253.17 Aligned_cols=173 Identities=26% Similarity=0.288 Sum_probs=142.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-c-C-CCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F-N-LPYEKSR 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~-~-~~~~~~~ 77 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.. ...+||+||++. .++.+|+.+++... . . .....+.
T Consensus 379 v~~Gei~~i~-G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~ 453 (607)
T 3bk7_A 379 IRKGEVIGIV-GPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKT 453 (607)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHH
T ss_pred cCCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHH
Confidence 4568889999 665 5999999 99999999999976 357999999874 45678998876532 1 1 1234567
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~ 153 (211)
++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||+
T Consensus 454 ~~l~~~~l~~~~~~-~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 454 ELLKPLGIIDLYDR-NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp HTHHHHTCTTTTTS-BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 88999999876664 88999999999999999999999999999999999999999999999764 67999999999
Q ss_pred HHHHhhCCeEEEEeC--CceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWALEK--KNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l~~--g~i~~~~g~~~~~~~ 183 (211)
+++..+||++++|++ |.+. ..|++.++..
T Consensus 533 ~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 999999999999985 5554 3466655443
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.98 E-value=2.4e-32 Score=250.77 Aligned_cols=176 Identities=22% Similarity=0.236 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.++||+||++. +++ .|+.+|+....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~ 441 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH--LFN-DTVANNIAYAR 441 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC--CCS-SBHHHHHHTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc--CCC-CCHHHHHhccC
Confidence 456788899994443 5999999 9999999999998654 236999999975 565 59999997532
Q ss_pred --CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 --NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 --~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.+.+++.++++.+++.+...+ .+..+||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 442 ~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 3456777888888877543222 2457999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++.+
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 522 ALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 99875 679999999999886 699999999999975 577776543
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.98 E-value=2.6e-32 Score=251.02 Aligned_cols=173 Identities=25% Similarity=0.312 Sum_probs=141.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-. ++|||++ ++|+++|++|+|..++ +.++||++|++. +++ .|+.+|+...
T Consensus 366 ~i~~G~~~~iv-G~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~ 441 (595)
T 2yl4_A 366 SIPSGSVTALV-GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI--LFS-CSIAENIAYG 441 (595)
T ss_dssp EECTTCEEEEE-CCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCC--CCS-SBHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCc--ccC-CCHHHHHhhc
Confidence 45678889999 554 5999999 9999999999998654 236999999975 565 5999999743
Q ss_pred cC----CCHHHHHHHHHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 69 FN----LPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 69 ~~----~~~~~~~~~l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.. .+.+++.++++.+++.+... . .+..+||||||||++||||++.+|+++||||||++||+.+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~ 521 (595)
T 2yl4_A 442 ADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 521 (595)
T ss_dssp SSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHH
T ss_pred CCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHH
Confidence 22 45677888888888743221 1 1347999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 135 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.+.|++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++
T Consensus 522 i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l 568 (595)
T 2yl4_A 522 VQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITE-YGKHEEL 568 (595)
T ss_dssp HHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECSCC-
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHH
Confidence 99999875 679999999999986 599999999999975 4665554
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.98 E-value=4.3e-32 Score=248.91 Aligned_cols=176 Identities=26% Similarity=0.285 Sum_probs=142.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ ++++||++|++. +++. |+.+|+....
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~-tv~eni~~~~ 439 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI--LFSD-TVKENILLGR 439 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC--CCSS-BHHHHHGGGC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc--cCcc-cHHHHHhcCC
Confidence 456788899994333 5999999 9999999999998764 246999999975 5654 9999986432
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
....+++.+.++..++.+.... .+..+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519 (578)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 2345666667776665432221 13468999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++. +.|+|+|||+++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 520 l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~ 564 (578)
T 4a82_A 520 LDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIA 564 (578)
T ss_dssp HHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9765 5699999999999865 99999999999975 688877653
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=3.7e-32 Score=250.25 Aligned_cols=176 Identities=22% Similarity=0.253 Sum_probs=143.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.++||++|++. +++ .|+.+|+....
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~eni~~~~ 453 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI--LFS-TTVKENLKYGN 453 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC--CCS-SBHHHHHHSSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc--ccc-ccHHHHHhcCC
Confidence 466788999994443 5999999 9999999999998754 346999999975 554 59999986432
Q ss_pred -CCCHHHHHHHHHhCCCCCccccC----------CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+.+++.++++.+++.+..... ...+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 454 PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533 (598)
T ss_dssp TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 23445566777777765433321 1268999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++. +.|+|+|||+++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 534 l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 534 MWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp HHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred HHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9875 6799999999999875 89999999999975 688877643
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=8.6e-32 Score=247.29 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=141.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.+++|+||++. ++. .|+.+|+....
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~eni~~~~ 441 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV--LFS-GTIKENLKWGR 441 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC--CCS-EEHHHHHTTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc--CcC-ccHHHHHhccC
Confidence 466788999994333 5999999 9999999999998754 346999999975 564 59999986432
Q ss_pred -CCCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++.+.++..+ ++....+ +..+||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~ 520 (587)
T 3qf4_A 442 EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520 (587)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 234455555554444 3333343 678999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++.+
T Consensus 521 ~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 521 GLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp HHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99875 579999999999986 799999999999975 688877654
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=4.6e-32 Score=246.59 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=136.6
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC----CCHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKS 76 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~----~~~~~~ 76 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.... ..++|++|+.. .....|+.+++..... .....+
T Consensus 291 i~~Gei~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~ 366 (538)
T 3ozx_A 291 AKEGEIIGIL-GPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFF 366 (538)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHH
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHH
Confidence 4567888888 665 5999999 9999999999998653 46999999864 3457789988764321 123456
Q ss_pred HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecC
Q psy2681 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 152 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd 152 (211)
.++++.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||
T Consensus 367 ~~~l~~~~l~~~~~~-~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 367 EEVTKRLNLHRLLES-NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHTTTTTTGGGCTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 788999999877664 89999999999999999999999999999999999999999999998764 5799999999
Q ss_pred hHHHHhhCCeEEEEeCC
Q psy2681 153 ERLIRETDCELWALEKK 169 (211)
Q Consensus 153 ~~~~~~~~~~v~~l~~g 169 (211)
++++..+||++++|+++
T Consensus 446 l~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 446 LSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHCSEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeCC
Confidence 99999999999999863
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-31 Score=243.09 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=139.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-C--CCHHHHHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-N--LPYEKSRRQL 80 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~--~~~~~~~~~l 80 (211)
|+.+.++ |-+ ++|||++ |+|+++|++|+.. ....++|++|+.. .....++.+++.... . .....+.+++
T Consensus 378 GEiv~ii-G~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 452 (608)
T 3j16_B 378 SEILVMM-GENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVV 452 (608)
T ss_dssp TCEEEEE-SCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTH
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEeccccc--ccCCccHHHHHHHHhhcccccHHHHHHHH
Confidence 4667888 665 5999999 9999999999742 3456999999864 344568888765322 1 2345567889
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++
T Consensus 453 ~~l~l~~~~~~-~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 453 KPLRIDDIIDQ-EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp HHHTSTTTSSS-BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHcCChhhhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999887765 89999999999999999999999999999999999999999999988764 67999999999999
Q ss_pred HhhCCeEEEEeC--CceeeecCChHHHHH
Q psy2681 157 RETDCELWALEK--KNIRKFNGDFDDYRE 183 (211)
Q Consensus 157 ~~~~~~v~~l~~--g~i~~~~g~~~~~~~ 183 (211)
..+|||+++|++ |+++ ..|++.++..
T Consensus 532 ~~~aDrvivl~~~~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 532 TYLADKVIVFEGIPSKNA-HARAPESLLT 559 (608)
T ss_dssp HHHCSEEEECEEETTTEE-ECCCCEEHHH
T ss_pred HHhCCEEEEEeCCCCeEE-ecCChHHHhh
Confidence 999999999986 6665 4566655543
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=9.6e-31 Score=249.78 Aligned_cols=171 Identities=36% Similarity=0.577 Sum_probs=137.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCC--CCCCCCHHHHHHh---------
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEH--LFPDDTPCEYLMK--------- 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~--l~~~~t~~e~~~~--------- 67 (211)
+++..|.++.++ |-+ ++|||+| |+|+++|++|+|..++..+++|++|++... ...+.|+.+++..
T Consensus 694 l~I~~GeivaIi-GpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~ 772 (986)
T 2iw3_A 694 FQCSLSSRIAVI-GPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRE 772 (986)
T ss_dssp EEEETTCEEEEC-SCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTT
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhh
Confidence 567889999999 665 4999999 999999999999987666799999864100 0011122222110
Q ss_pred --------------------------------------------------------------------------------
Q psy2681 68 -------------------------------------------------------------------------------- 67 (211)
Q Consensus 68 -------------------------------------------------------------------------------- 67 (211)
T Consensus 773 ~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~ 852 (986)
T 2iw3_A 773 TMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE 852 (986)
T ss_dssp TTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHH
T ss_pred hhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhh
Confidence
Q ss_pred -------------------hcCCCHHHHHHHHHhCCCCCcc-ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 68 -------------------LFNLPYEKSRRQLGMFGLPSYA-HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 68 -------------------~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
........+.++++.+||.... .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 853 ~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gL 932 (986)
T 2iw3_A 853 SHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTC
T ss_pred hHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 0011245677899999997532 23478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 128 DIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 128 D~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+.+...+.+.|+++++|||+||||++++..+|+++++|.+|+++.
T Consensus 933 D~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 933 DRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred CHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999998899999999999999999999999999864
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=5.4e-30 Score=233.15 Aligned_cols=160 Identities=24% Similarity=0.266 Sum_probs=129.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE---------ec-------------CCeEEEEEeCCCCCCCCC-
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR---------KS-------------PRLRIGKFDQHSGEHLFP- 57 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~---------~~-------------~~~~ig~v~q~~~~~l~~- 57 (211)
+..|..+.++ |-+ ++|||+| |+|+++|++|++. .. ....+++++|... .++
T Consensus 44 i~~Ge~~~Lv-G~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~--~~~~ 120 (538)
T 1yqt_A 44 VKEGMVVGIV-GPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVD--LIPK 120 (538)
T ss_dssp CCTTSEEEEE-CCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGG--GSGG
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhh--hcch
Confidence 5678899999 554 5999999 9999999999841 11 1235788888643 111
Q ss_pred --CCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 58 --DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 58 --~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
..++.+++.... ..+++.++++.+|++...++ ++.+|||||||||+||+||+.+|++||||||||+||+.++.++
T Consensus 121 ~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~-~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l 197 (538)
T 1yqt_A 121 AVKGKVIELLKKAD--ETGKLEEVVKALELENVLER-EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA 197 (538)
T ss_dssp GCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 136777664321 12357789999999877664 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.++|+++ +.|||+||||++++..+||++++|+++
T Consensus 198 ~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 198 ARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999765 679999999999999999999999865
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=8.5e-30 Score=234.55 Aligned_cols=161 Identities=22% Similarity=0.242 Sum_probs=130.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE---------ec-------------CCeEEEEEeCCCC--CCCC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR---------KS-------------PRLRIGKFDQHSG--EHLF 56 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~---------~~-------------~~~~ig~v~q~~~--~~l~ 56 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|++. .. ....+++++|... +.++
T Consensus 114 i~~Ge~~~Li-G~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 114 VKDGMVVGIV-GPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCTTSEEEEE-CCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCEEEEE-CCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 4678889999 554 5999999 9999999999851 11 1234788888642 1111
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 57 ~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
..++.+++... ...+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++||||||||+||+.++..+.
T Consensus 193 -~~tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~~-~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~ 268 (607)
T 3bk7_A 193 -KGKVRELLKKV--DEVGKFEEVVKELELENVLDR-ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268 (607)
T ss_dssp -CSBHHHHHHHT--CCSSCHHHHHHHTTCTTGGGS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred -cccHHHHhhhh--HHHHHHHHHHHHcCCCchhCC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 23788877532 122457789999999887764 89999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
++|+++ +.|||+||||++++..+||++++|.++
T Consensus 269 ~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 269 RVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 999876 679999999999999999999999865
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=3.8e-29 Score=246.54 Aligned_cols=174 Identities=22% Similarity=0.274 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++--. ++|||++ +.|+++|++|+|..++ +.++||++|++. ++. .|+.+|+....
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~~-~ti~eNi~~g~ 488 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV--LFA-TTIAENIRYGR 488 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC--CCS-SCHHHHHHHHC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc--cCC-ccHHHHHhcCC
Confidence 466788999994443 5999999 9999999999998764 346999999985 565 49999997543
Q ss_pred -CCCHHHHHHHHHhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++.+.++..++. ..... +..+||||||||++||||++.+|++||||||||+||+.+...+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 34455555555544432 22222 456899999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++.. +.|+|+|||+++.+.. ||++++|++|+++. .|+++++.
T Consensus 568 ~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~ 612 (1284)
T 3g5u_A 568 ALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELM 612 (1284)
T ss_dssp HHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHH
T ss_pred HHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHH
Confidence 98754 6799999999999976 89999999999975 67777654
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=2.6e-29 Score=247.68 Aligned_cols=175 Identities=23% Similarity=0.312 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|.++.++ |-. ++|||++ +.|+++|++|+|..++ +.+++|+||++. ++ ..|+.+|+...
T Consensus 1055 ~i~~Ge~v~iv-G~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1055 EVKKGQTLALV-GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI--LF-DCSIAENIAYG 1130 (1284)
T ss_dssp EECSSSEEEEE-CSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC--CC-SSBHHHHHTCC
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc--cc-cccHHHHHhcc
Confidence 35678899999 664 5999999 9999999999998653 457999999984 44 57999998632
Q ss_pred c---CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 69 F---NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 69 ~---~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
. ..+.+.+.+.++..++.+...+ ....+|||||||||+|||||+.+|++|||||||+|||+.+...+
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2 2345555555555544322111 13468999999999999999999999999999999999999999
Q ss_pred HHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 136 AEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 136 ~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+.|++. +.|+|+||||++.+.. ||++++|++|++++ .|+++++.+
T Consensus 1211 ~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1211 QEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999875 5699999999999865 99999999999976 578777654
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=5.6e-29 Score=237.67 Aligned_cols=174 Identities=24% Similarity=0.367 Sum_probs=139.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-cc-CcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHh-hcCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PK-GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRR 78 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~-G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~~ 78 (211)
.+..|.++.+++.-. ++|||+| |+ |.+ .|. ......+++|++|++. .+++.+|+.+++.. ..+. .+++.+
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~~~ltv~e~l~~~~~~~-~~~v~~ 530 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTHSDTSVLDFVFESGVGT-KEAIKD 530 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCCTTSBHHHHHHTTCSSC-HHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccccCCcHHHHHHHhhcCH-HHHHHH
Confidence 456788999994443 5999999 87 443 121 0011234788888752 35778899998864 1122 567888
Q ss_pred HHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHH
Q psy2681 79 QLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 157 (211)
Q Consensus 79 ~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 157 (211)
+++.+|+. ...+ +++.+|||||||||+|||||+.+|++|||||||||||+.++.++.++|++.+.|||+||||++++.
T Consensus 531 ~L~~lgL~~~~~~-~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 531 KLIEFGFTDEMIA-MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHTTCCHHHHH-SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHH
T ss_pred HHHHcCCChhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 99999996 4444 488999999999999999999999999999999999999999999999987779999999999999
Q ss_pred hhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 158 ETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 158 ~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+||++++|++|+++.+.|+++++..
T Consensus 610 ~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 610 NVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999998766788887653
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=5.3e-29 Score=246.04 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=144.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|++.|++|+|..++ |.+++||||+|. +| +-|+.+|+..
T Consensus 1100 l~I~~Ge~vaIV-G~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~--LF-~gTIreNI~~ 1175 (1321)
T 4f4c_A 1100 FSVEPGQTLALV-GPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT--LF-DCSIAENIIY 1175 (1321)
T ss_dssp EEECTTCEEEEE-CSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC--CC-SEEHHHHHSS
T ss_pred EEECCCCEEEEE-CCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE--ee-CccHHHHHhc
Confidence 356789999999 554 5999999 9999999999998754 457999999985 55 4599999853
Q ss_pred h---cCCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 68 L---FNLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 68 ~---~~~~~~~~~~~l~~~gl~~~~-------~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
. .+.+.+++.++++..++.+.. +. ..-..||||||||++|||||+.+|++||||||||+||+++...
T Consensus 1176 gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~ 1255 (1321)
T 4f4c_A 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKV 1255 (1321)
T ss_dssp SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHH
Confidence 2 234567788888877764321 11 1235799999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 135 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 135 l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.+.|++. ++|+|+|+|.++.+.. ||+|+||++|++++ .|+++++.+
T Consensus 1256 Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1256 VQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp HHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999876 5799999999999865 69999999999987 588877654
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=8e-29 Score=225.29 Aligned_cols=162 Identities=24% Similarity=0.265 Sum_probs=125.1
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEE-----------ecC-------------CeEEEEEeCCCCC-CCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR-----------KSP-------------RLRIGKFDQHSGE-HLF 56 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~~-~l~ 56 (211)
..|..+.++ |=+ ++|||+| |+|+++|++|++. ... ...+...+|.... ..+
T Consensus 23 ~~Gei~gLi-GpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 23 KNNTILGVL-GKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CTTEEEEEE-CCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCEEEEE-CCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 356778888 554 5999999 9999999999872 111 1123444443210 001
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 57 ~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...++.+++.... ....+.++++.+|+....++ ++.+|||||||||+|||||+.+|++||||||||+||+.++.++.
T Consensus 102 ~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~-~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 102 LKGTVNEILTKID--ERGKKDEVKELLNMTNLWNK-DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp CCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred ccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 2235666553321 12346788999999877664 89999999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
++|+++ +.|||+||||++++..+||+++++.+|.
T Consensus 179 ~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999876 6799999999999999999999998654
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-28 Score=225.68 Aligned_cols=165 Identities=21% Similarity=0.239 Sum_probs=125.8
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCC----
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGE---- 53 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~---- 53 (211)
..|..+.++ |-+ ++|||+| |+|+++|++|+|.... .....+.+|....
T Consensus 101 ~~Gei~~Lv-GpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 101 RPGQVLGLV-GTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CTTSEEEEE-CCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCEEEEE-CCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 457788888 554 5999999 9999999999983110 0011122222110
Q ss_pred CCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 54 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 54 ~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
...+..++.+++........+.+.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~ 258 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL 258 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS-CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCC-ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence 00011234444433333345678899999999887765 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.+.++|+++ +.|||+||||++++..+||++++|.++..
T Consensus 259 ~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 259 NAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999876 56999999999999999999999987653
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=3.6e-28 Score=240.10 Aligned_cols=173 Identities=23% Similarity=0.243 Sum_probs=142.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ +.|++.|++|+|..++ +.+||||+|+|. + .+.|+.+|+....
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~--L-f~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA--L-FNCTIEENISLGK 516 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--C-CSEEHHHHHHTTC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcce--e-eCCchhHHHhhhc
Confidence 356788899995554 5999999 9999999999998764 347999999985 4 4569999997543
Q ss_pred -CCCHHHHHHHHHhCCCCCc-----------cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSY-----------AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~-----------~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
..+.+++.++++..++.+. ... .-..||||||||++||||++.+|+++|||||||+||+.+...+.+
T Consensus 517 ~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 517 EGITREEMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred ccchHHHHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence 3467777777777665322 222 346799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|.++ ++|+|+|||++..+. .||+|++|++|++++ .|+.+++
T Consensus 596 ~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 596 ALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp HHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec-cCCHHHH
Confidence 99875 679999999999885 579999999999976 5776654
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=4.1e-27 Score=219.10 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=115.3
Q ss_pred cccccCeeeeecCCC--Cccccc---------------------c-ccCcccCCcceEE-------ec-------CCeEE
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFI---------------------K-PKGELTPNKGELR-------KS-------PRLRI 44 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl---------------------~-i~G~~~p~~G~i~-------~~-------~~~~i 44 (211)
.+..|..+.++ |-+ ++|||+ + +.|+..|+.|.+. .. .+..+
T Consensus 40 ~i~~Ge~~~li-GpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~i 118 (670)
T 3ux8_A 40 EIPRGKLVVLT-GLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTV 118 (670)
T ss_dssp EEETTSEEEEE-CSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBH
T ss_pred EECCCCEEEEE-CCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhce
Confidence 35678889999 665 599997 7 7888888855543 21 12234
Q ss_pred EEEeCCCC-----------------CCCCCCCCHHHHHHhhcCC--C---H----------HHHHHHHHhCCCCCccccC
Q psy2681 45 GKFDQHSG-----------------EHLFPDDTPCEYLMKLFNL--P---Y----------EKSRRQLGMFGLPSYAHTI 92 (211)
Q Consensus 45 g~v~q~~~-----------------~~l~~~~t~~e~~~~~~~~--~---~----------~~~~~~l~~~gl~~~~~~~ 92 (211)
|+++|.+. ...++.+|+.+++...... . . .....+++.+||.+...++
T Consensus 119 g~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 198 (670)
T 3ux8_A 119 GTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSR 198 (670)
T ss_dssp HHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTC
T ss_pred eeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcC
Confidence 45554322 1123455666665432110 0 0 0112358889998653335
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE-
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL- 166 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l- 166 (211)
++.+|||||||||+|||||+.+|+ +|||||||+|||+.++.++.++|+++ +.|||+||||++++. .||++++|
T Consensus 199 ~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~ 277 (670)
T 3ux8_A 199 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIG 277 (670)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEec
Confidence 889999999999999999999998 99999999999999999999998765 579999999999876 59999999
Q ss_pred -----eCCceeeecCChHHHH
Q psy2681 167 -----EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 167 -----~~g~i~~~~g~~~~~~ 182 (211)
++|+++ +.|+++++.
T Consensus 278 ~g~~~~~G~i~-~~g~~~~~~ 297 (670)
T 3ux8_A 278 PGAGIHGGEVV-AAGTPEEVM 297 (670)
T ss_dssp SSSGGGCCSEE-EEECHHHHH
T ss_pred ccccccCCEEE-EecCHHHHh
Confidence 788886 467776654
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=6.7e-25 Score=204.22 Aligned_cols=121 Identities=26% Similarity=0.340 Sum_probs=96.6
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHH
Q psy2681 59 DTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDA 134 (211)
Q Consensus 59 ~t~~e~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~ 134 (211)
+++.+++....... ..+..+.+..+|+......+++.+|||||||||+|||||+.+| ++|||||||+|||+.++..
T Consensus 505 ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 505 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 56666665432221 2345677888999754334588999999999999999999887 4999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
++++|+++ +.|||+||||++++. .||++++| ++|+++. .|+++++
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~~ 638 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEV 638 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE-ecCHHHH
Confidence 99998765 679999999999884 69999999 7898864 5776654
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=6.9e-24 Score=202.09 Aligned_cols=107 Identities=27% Similarity=0.386 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
.+..++|+.+||......+++.+|||||||||+|||||+.+| ++|||||||+|||+.++..+++.|+++ +.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 345678999999754434588999999999999999999875 799999999999999999999998765 67999
Q ss_pred EEecChHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+||||++++.. ||++++| ++|+++ ..|+++++.
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~ 901 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIA 901 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHH
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHH
Confidence 99999999865 9999999 788886 468877654
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-26 Score=207.04 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=136.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcc-e-EEecC--CeEEEEEeCCCCC-CCCCCCCHHHHHHhhc---C-C
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKG-E-LRKSP--RLRIGKFDQHSGE-HLFPDDTPCEYLMKLF---N-L 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G-~-i~~~~--~~~ig~v~q~~~~-~l~~~~t~~e~~~~~~---~-~ 71 (211)
.+..|.++.+++.-. ++|||+| |+|+.+|++| + |..+. ++.++|+||+... .+...+++.+++.... + .
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~ 213 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGAT 213 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcc
Confidence 356788999996554 5999999 9999999999 8 87653 5578999998631 1233456555542110 1 1
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHH--HhcCCCe----EEEeC-CCCCCCHHHHHHHHHHHHhcCC
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL--TLNNPDI----LILDE-PTNNLDIESIDALAEAIKNYQG 144 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iara--l~~~p~l----llLDE-Pt~gLD~~~~~~l~~~l~~~~~ 144 (211)
....+..+++.+|+.+..+ +.+|||||||||+|||| |+.+|++ +|||| ||++||+. ...+.+++++++.
T Consensus 214 ~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~ 289 (460)
T 2npi_A 214 LLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNV 289 (460)
T ss_dssp SSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCC
Confidence 1123446788899986543 67999999999999999 9999999 99999 99999999 8888888888888
Q ss_pred eEEEEecChH------HHHhhCCe-----EEEEe-CCceeeecCChHHHH
Q psy2681 145 GVILVSHDER------LIRETDCE-----LWALE-KKNIRKFNGDFDDYR 182 (211)
Q Consensus 145 tiiivsHd~~------~~~~~~~~-----v~~l~-~g~i~~~~g~~~~~~ 182 (211)
|+|+||||.+ ++..+||+ +++|. +|+++ .++..++.
T Consensus 290 tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 290 NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 9999999988 78889999 99999 89986 57776553
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=6.9e-23 Score=193.79 Aligned_cols=105 Identities=22% Similarity=0.332 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~---p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
++.++++.+||......+++.+|||||||||+||++|+.+ |++|||||||+|||+.++..+.++|+++ +.|||+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567899999986433358899999999999999999996 7999999999999999999999998764 679999
Q ss_pred EecChHHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 149 VSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
||||++++ ..||++++| ++|+++ +.|+++++
T Consensus 789 isHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el 825 (842)
T 2vf7_A 789 VEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEV 825 (842)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHH
T ss_pred EcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHH
Confidence 99999999 789999999 678886 46776654
No 63
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.88 E-value=2.6e-22 Score=153.84 Aligned_cols=75 Identities=36% Similarity=0.511 Sum_probs=68.3
Q ss_pred CCCCCCChHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~ia------ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++.+||||||||++|| ||++.+|+++||||||+|||+.++..+.+.+.++ +.|||+||||.+ +...|++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCE
Confidence 47899999999999876 8999999999999999999999999999999876 469999999994 6789999
Q ss_pred EEEEe
Q psy2681 163 LWALE 167 (211)
Q Consensus 163 v~~l~ 167 (211)
+++|.
T Consensus 132 ii~l~ 136 (148)
T 1f2t_B 132 VIRIS 136 (148)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99994
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.87 E-value=1.6e-21 Score=171.17 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEE----eC
Q psy2681 97 LSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL----EK 168 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l----~~ 168 (211)
|||||||||+||++|+.+| ++|||||||+|||+.++.++.+.|+++ +.|||+||||++++ ..||++++| .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 47999999999887 579999999 89
Q ss_pred Cceee
Q psy2681 169 KNIRK 173 (211)
Q Consensus 169 g~i~~ 173 (211)
|+++.
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98753
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=1.9e-21 Score=184.96 Aligned_cols=120 Identities=26% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHH
Q psy2681 59 DTPCEYLMKLFNLP-YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESID 133 (211)
Q Consensus 59 ~t~~e~~~~~~~~~-~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~ 133 (211)
+|+.+++..+.... ..+..++++.+||.. ... +++.+|||||||||+||++|+.+| ++|||||||+|||+.++.
T Consensus 807 ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~-~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~ 885 (972)
T 2r6f_A 807 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLG-QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 885 (972)
T ss_dssp SBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTT-CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHH
T ss_pred cCHHHHHHHHhcchhHHHHHHHHHHcCCCccccc-CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHH
Confidence 35555554322221 124567899999986 444 488999999999999999999865 999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
.++++|+++ +.|||+||||++++ ..||++++| .+|+++. .|+++++
T Consensus 886 ~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~-~g~~~el 940 (972)
T 2r6f_A 886 RLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVA-VGTPEEV 940 (972)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEE-EESHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEE-ecCHHHH
Confidence 999998765 67999999999998 579999999 6788864 5665544
No 66
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1.2e-21 Score=186.79 Aligned_cols=106 Identities=28% Similarity=0.401 Sum_probs=91.1
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
..+.+..+||......+++.+|||||||||+|||||+.+|+ +|||||||+|||+....++.++|+++ +.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997653335889999999999999999999887 99999999999999999999999876 46999999
Q ss_pred cChHHHHhhCCeEEEE------eCCceeeecCChHHHHH
Q psy2681 151 HDERLIRETDCELWAL------EKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~~ 183 (211)
||++++.. ||++++| ++|+++ +.|+++++.+
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK 560 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence 99999865 9999999 777775 5788877643
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=7.9e-22 Score=171.52 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=73.9
Q ss_pred CCCCCCChHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKARVALAELTL------NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 378899999999999999999 799999999999999999999999999876 5799999999998 567899
Q ss_pred EEEEeCCcee
Q psy2681 163 LWALEKKNIR 172 (211)
Q Consensus 163 v~~l~~g~i~ 172 (211)
+++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999885
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=3.1e-21 Score=184.07 Aligned_cols=105 Identities=30% Similarity=0.377 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 75 KSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 75 ~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
+..++++.+||.. ... +++.+|||||||||+||++|+.+| ++|||||||+|||+.++..++++|+++ +.|||
T Consensus 842 ~~~~~L~~lgL~~~~l~-~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLG-QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHHTTGGGSBTT-CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCccccc-CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3467899999976 344 488999999999999999999865 999999999999999999999998764 67999
Q ss_pred EEecChHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+||||++++ ..||++++| .+|+++ +.|+++++.
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~~G~Iv-~~G~~~el~ 959 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAGGGTVV-AQGTPEDVA 959 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTSCSEEE-EEECHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCCCCEEE-EecCHHHHH
Confidence 999999998 579999999 577775 467777654
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=7.8e-21 Score=180.82 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=87.2
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecC
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 152 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd 152 (211)
+.|..+||......+++.+|||||+|||+||++|..+| ++|||||||+|||+....+|++.|+++ +.|||+||||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 35888999764233589999999999999999999985 999999999999999999999988764 6799999999
Q ss_pred hHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 153 ERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 153 ~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
++++. .||++++| ++|+++ +.|+++++.
T Consensus 566 l~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~ 599 (972)
T 2r6f_A 566 EDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 599 (972)
T ss_dssp HHHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTT
T ss_pred HHHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHH
Confidence 99886 69999999 567775 567766543
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.83 E-value=1.1e-20 Score=180.28 Aligned_cols=103 Identities=25% Similarity=0.319 Sum_probs=87.9
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.+..+||......+++.+|||||||||+||++|..+ |++|||||||+|||+....+|++.|+++ +.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 478889875422358899999999999999999998 5999999999999999999999888754 67999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~~ 183 (211)
+++. .||++++| ++|+++ +.|+++++.+
T Consensus 584 ~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~ 617 (993)
T 2ygr_A 584 DTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLR 617 (993)
T ss_dssp HHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHH
T ss_pred HHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhh
Confidence 9886 69999999 566664 6788887754
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=3.5e-20 Score=175.42 Aligned_cols=102 Identities=26% Similarity=0.343 Sum_probs=86.9
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.+..+||......+++.+|||||||||+||++|+.+| .+|||||||++||+....+++++|+++ +.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 6888999865233588999999999999999999999 599999999999999999999988654 67999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+++. .||++++| .+|+++ +.|+++++.
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~ 474 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLK 474 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHH
Confidence 9775 69999999 567665 567776653
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.80 E-value=4.3e-22 Score=160.68 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=85.3
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe--------cCCeEEEEEeCCCCCCCCCCC-CHHHHHHhhcC-C
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK--------SPRLRIGKFDQHSGEHLFPDD-TPCEYLMKLFN-L 71 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~--------~~~~~ig~v~q~~~~~l~~~~-t~~e~~~~~~~-~ 71 (211)
..|..+.++ |-+ ++|||++ ++|+ +|++|+|.. ..+..+||+||++...+.... .....+ .. .
T Consensus 20 ~~Ge~~~li-G~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~---~~~~ 94 (208)
T 3b85_A 20 DTNTIVFGL-GPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDAL---RDMV 94 (208)
T ss_dssp HHCSEEEEE-CCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHH---TTTS
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHH---HHhc
Confidence 356778888 554 5999999 9999 999999842 123468999987622221111 111111 11 1
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILV 149 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiiv 149 (211)
....+.++++. |+ ||||||+|||||+.+|++|||||||+| ++..+.++|+++ +.||| |
T Consensus 95 ~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-v 154 (208)
T 3b85_A 95 EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-V 154 (208)
T ss_dssp CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-E
T ss_pred cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-E
Confidence 22345555554 32 999999999999999999999999999 888999999876 45888 9
Q ss_pred ecChHHHHh
Q psy2681 150 SHDERLIRE 158 (211)
Q Consensus 150 sHd~~~~~~ 158 (211)
|||++++..
T Consensus 155 tHd~~~~~~ 163 (208)
T 3b85_A 155 TGDITQVDL 163 (208)
T ss_dssp EEC------
T ss_pred ECCHHHHhC
Confidence 999998764
No 73
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.78 E-value=2.8e-18 Score=134.51 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
+++..||||||||++||++++. +|+++||||||+|||+.+...+.++|+++ +.++|++||+.... ..||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 3678999999999999999974 46999999999999999999999999876 35899999998765 68899985
Q ss_pred E--eCCceeeecCChHHHHH
Q psy2681 166 L--EKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 166 l--~~g~i~~~~g~~~~~~~ 183 (211)
+ .+|.......+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 4 46655444556655443
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=2.6e-18 Score=146.75 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeE--
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-- 163 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v-- 163 (211)
.++..||+|||||++||+||+ .+|+++||||||++||+..+..+.++|+++ +.+||++||+.+ +...||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~ 293 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHG 293 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEE
Confidence 367899999999999999997 689999999999999999999999999887 569999999975 55688976
Q ss_pred EEEeCCceeeecCCh
Q psy2681 164 WALEKKNIRKFNGDF 178 (211)
Q Consensus 164 ~~l~~g~i~~~~g~~ 178 (211)
+++.+|.......+.
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 788888765443333
No 75
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=1.5e-18 Score=157.09 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=69.8
Q ss_pred CCCCC-ChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 93 PIRDL-SGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 93 ~~~~L-SgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
++..| ||||||||+||++++.+| ++|||||||+|||+.++..+.+.|+++ +.|||+||||++.+. .||++++|.
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~~ 471 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVE 471 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEe
Confidence 56788 999999999999999999 999999999999999999999999876 579999999999886 699999996
Q ss_pred CC
Q psy2681 168 KK 169 (211)
Q Consensus 168 ~g 169 (211)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=2.5e-18 Score=147.86 Aligned_cols=75 Identities=36% Similarity=0.532 Sum_probs=66.6
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.++|+++ +.|||+||||.+ +...|++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~ 322 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 322 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCE
Confidence 478999999999 678888888999999999999999999999999999875 459999999976 5678999
Q ss_pred EEEEe
Q psy2681 163 LWALE 167 (211)
Q Consensus 163 v~~l~ 167 (211)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.74 E-value=2.5e-18 Score=135.33 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=102.3
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCC-cceEEe-----cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPN-KGELRK-----SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~-----~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~ 79 (211)
++.++ |-+ ++|||++ ++|.+... .|.... ..+..+||++|++. .. +++.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~----~~~~------------- 59 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GK----KKIF------------- 59 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CC----EEEE-------------
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HH----HHHH-------------
Confidence 35556 554 4999999 99987432 332211 12346899988641 10 1110
Q ss_pred HHhCCCC--CccccCCCCCCChHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCCeEEEEe
Q psy2681 80 LGMFGLP--SYAHTIPIRDLSGGQKARVALAEL-----TLNNPDILILDE--PTNNLDIESIDALAEAIKNYQGGVILVS 150 (211)
Q Consensus 80 l~~~gl~--~~~~~~~~~~LSgG~kqRv~iara-----l~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~tiiivs 150 (211)
..++.. .... +++.+||||||||++||+| ++.+|+++|||| ||++||+..+..+.+.+.+.+.|+|++|
T Consensus 60 -~~~~~~~~~~~~-~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~ 137 (178)
T 1ye8_A 60 -SSKFFTSKKLVG-SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp -EETTCCCSSEET-TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred -HhhcCCcccccc-ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 011111 1233 3678999999999999996 999999999999 9999999999999999988777788888
Q ss_pred ---cChHHHHhhCCeEEEEeCCceeee-cCChHHHHHHHHHH
Q psy2681 151 ---HDERLIRETDCELWALEKKNIRKF-NGDFDDYREKLLTS 188 (211)
Q Consensus 151 ---Hd~~~~~~~~~~v~~l~~g~i~~~-~g~~~~~~~~~~~~ 188 (211)
||..++..++++ .+|+++.+ ..+.+++.+++.+.
T Consensus 138 H~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 138 PIRDVHPLVKEIRRL----PGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp CSSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHHHHH
T ss_pred ccCCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHHHHH
Confidence 599999999887 34444433 23444554444443
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.71 E-value=1.2e-20 Score=166.25 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=115.3
Q ss_pred eeeeecCCC-Ccccccc-ccCcccCCcceEEecCCe--EEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCC
Q psy2681 9 RIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRL--RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 84 (211)
Q Consensus 9 ~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~--~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~g 84 (211)
.+.+++.-. ++|||+| ++|+.+|++|+|...... +.++++|++ .++.+++.+++.... ....+.++++.++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~---~~~~ltv~D~~g~~~--~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP---NIPNVVFWDLPGIGS--TNFPPDTYLEKMK 145 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS---SCTTEEEEECCCGGG--SSCCHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc---ccCCeeehHhhcccc--hHHHHHHHHHHcC
Confidence 677884443 5999999 999999999999765421 137888874 345556555442211 1234678899999
Q ss_pred CCCccccCCCCCCChH--HHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--------C-
Q psy2681 85 LPSYAHTIPIRDLSGG--QKARVALAELTLN----------NPDILILDEPTNNLDIESIDALAEAIKNY--------Q- 143 (211)
Q Consensus 85 l~~~~~~~~~~~LSgG--~kqRv~iaral~~----------~p~lllLDEPt~gLD~~~~~~l~~~l~~~--------~- 143 (211)
+.+... .+. ||+| |+||++||++++. +|++++|||||+|||+.++..+++.++++ +
T Consensus 146 L~~~~~--~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 146 FYEYDF--FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GGGCSE--EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccCC--eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 876432 333 9999 9999999999999 99999999999999999999888877653 1
Q ss_pred ---CeEEEEecChHH--HHhhCCeEE-EEeCCc
Q psy2681 144 ---GGVILVSHDERL--IRETDCELW-ALEKKN 170 (211)
Q Consensus 144 ---~tiiivsHd~~~--~~~~~~~v~-~l~~g~ 170 (211)
.+|+++||++.. ++++++++. .|..|.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 468899999887 888888875 455554
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.70 E-value=1.3e-17 Score=144.60 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCCC-CCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC
Q psy2681 92 IPIR-DLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 161 (211)
Q Consensus 92 ~~~~-~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 161 (211)
++++ .||||||||++||++|+ .+|++|||||||++||+..+..+.+.+.++..|+|++||. +. .++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 3566 79999999999999999 8999999999999999999999999999887899999995 33 789
Q ss_pred eEEEEeCCceeeecCChH
Q psy2681 162 ELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 162 ~v~~l~~g~i~~~~g~~~ 179 (211)
+++++++|+++. .|+..
T Consensus 336 ~i~~l~~G~i~~-~g~~~ 352 (359)
T 2o5v_A 336 LTLRAQAGRFTP-VADEE 352 (359)
T ss_dssp EEEEEETTEEEE-CCCTT
T ss_pred EEEEEECCEEEe-cCCHH
Confidence 999999999864 45544
No 80
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.66 E-value=2.1e-16 Score=137.35 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=67.6
Q ss_pred CCCCCCChHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKARV------ALAELTLNN-PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kqRv------~iaral~~~-p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~ 162 (211)
+++..|||||+||+ ++|++++.+ |+++||||||++||+..+..+.+.|.++. .+||+|||+.+ +...|++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 36689999999988 567899999 99999999999999999999999998863 48999999987 5788999
Q ss_pred EEEEeC
Q psy2681 163 LWALEK 168 (211)
Q Consensus 163 v~~l~~ 168 (211)
++++.+
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999873
No 81
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.63 E-value=8.6e-17 Score=125.24 Aligned_cols=138 Identities=9% Similarity=0.068 Sum_probs=90.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
+..|..+.++ |-. ++|||++ +.+-....++. ...|+++|++.... ...++.+.+. ......
T Consensus 6 i~~gei~~l~-G~nGsGKSTl~~~~~~~~~~~~~d------~~~g~~~~~~~~~~-~~~~~~~~~~--------~~~~~~ 69 (171)
T 4gp7_A 6 IPELSLVVLI-GSSGSGKSTFAKKHFKPTEVISSD------FCRGLMSDDENDQT-VTGAAFDVLH--------YIVSKR 69 (171)
T ss_dssp EESSEEEEEE-CCTTSCHHHHHHHHSCGGGEEEHH------HHHHHHCSSTTCGG-GHHHHHHHHH--------HHHHHH
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHccCCeEEccH------HHHHHhcCcccchh-hHHHHHHHHH--------HHHHHH
Confidence 4456777777 665 5999999 65322221111 11266777653211 1111111111 111222
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHh---
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----------------SIDALAEAIKN--- 141 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~----------------~~~~l~~~l~~--- 141 (211)
...|.....+ .....|+|||||++||+|++.+|++++|||||++||+. .+..+.+.+++
T Consensus 70 ~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~ 147 (171)
T 4gp7_A 70 LQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR 147 (171)
T ss_dssp HHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH
T ss_pred HhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh
Confidence 3345554444 34567999999999999999999999999999999999 55778887543
Q ss_pred cCCeEEEEecChHHHHhh
Q psy2681 142 YQGGVILVSHDERLIRET 159 (211)
Q Consensus 142 ~~~tiiivsHd~~~~~~~ 159 (211)
.+.|+|++|||++++..+
T Consensus 148 ~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 148 EGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HTCSEEEEECSHHHHHHE
T ss_pred cCCcEEEEeCCHHHhhhh
Confidence 377999999999999765
No 82
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.62 E-value=1.3e-15 Score=134.69 Aligned_cols=74 Identities=28% Similarity=0.366 Sum_probs=66.2
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEE
Q psy2681 93 PIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
++..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++ +.++|++||+...+ ..||++++
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~ 408 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVG 408 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEE
Confidence 45679999999999999999 589999999999999999999999999876 35999999997665 57899998
Q ss_pred Ee
Q psy2681 166 LE 167 (211)
Q Consensus 166 l~ 167 (211)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.60 E-value=1.6e-17 Score=141.00 Aligned_cols=154 Identities=9% Similarity=0.040 Sum_probs=115.1
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..+.++ |.+ ++||+++ ++|.++|++|+|.... +..++|++|++. .+++..++.+++
T Consensus 99 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHHHHHHHHH
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHHHHHHHHH
Confidence 45566777 665 5999999 9999999999997532 124899999753 146667788877
Q ss_pred Hhhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 66 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 66 ~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.... +.. ..+++.+|+.+..++ ++.+|| |||++||||++.+|+ +|+|| ||+|||+.++. .++-++
T Consensus 177 ~~~~~~~~d----~~lldt~gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--~~~~~~ 245 (302)
T 3b9q_A 177 KRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEV 245 (302)
T ss_dssp HHHHHTTCS----EEEECCCCCSSCCHH-HHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHH
T ss_pred HHHHHcCCc----chHHhcCCCCcchhH-HHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--HHHHHh
Confidence 5321 111 135677888765554 678999 999999999999999 99999 99999998653 333335
Q ss_pred cCCeEEEEec---------ChHHHHhhCCeEEEEeCCcee
Q psy2681 142 YQGGVILVSH---------DERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 142 ~~~tiiivsH---------d~~~~~~~~~~v~~l~~g~i~ 172 (211)
.+.|+|++|| .++.+......+.++..|+.+
T Consensus 246 ~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 246 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 6789999999 567777888899999999753
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.57 E-value=9.2e-16 Score=138.96 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=104.2
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
..|..+.++ |-. ++|||++ ++|...|. |+ ..+.+.+|++. ..+..+... .+.+.. + +.
T Consensus 279 ~~G~i~~i~-G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~------~~l~~~~~~-~g~~~~---~-~~ 339 (525)
T 1tf7_A 279 FKDSIILAT-GATGTGKTLLVSRFVENACAN-KE------RAILFAYEESR------AQLLRNAYS-WGMDFE---E-ME 339 (525)
T ss_dssp ESSCEEEEE-ECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCH------HHHHHHHHT-TSCCHH---H-HH
T ss_pred CCCcEEEEE-eCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCH------HHHHHHHHH-cCCCHH---H-HH
Confidence 345566666 553 5999999 99998885 43 12455666531 112222211 233322 2 22
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----HHHHHHHHHHh---cCCeEEEEecCh
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-----SIDALAEAIKN---YQGGVILVSHDE 153 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~-----~~~~l~~~l~~---~~~tiiivsHd~ 153 (211)
.+|+....+. ++.+|||||+||+++|+++..+|+++|+| ||++||+. .+..+.++++. .+.|||++||+.
T Consensus 340 ~~g~~~~~~~-~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 340 RQNLLKIVCA-YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HTTSEEECCC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred hCCCEEEEEe-ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4555444443 67899999999999999999999999999 99999998 88887777654 477999999999
Q ss_pred ----------HHHHhhCCeEEEEeCCc
Q psy2681 154 ----------RLIRETDCELWALEKKN 170 (211)
Q Consensus 154 ----------~~~~~~~~~v~~l~~g~ 170 (211)
..+..+||++++|.+|.
T Consensus 418 ~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 418 QFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred cccCcccccCcccceeeeEEEEEEEEE
Confidence 78888999999998775
No 85
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.55 E-value=2e-18 Score=144.36 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=83.9
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC----CH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL----PY 73 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~----~~ 73 (211)
.+.++ |-+ ++|||+| |+|...|++|++...+ +..++|++|++. +++.+|+.+++...... ..
T Consensus 4 ~v~lv-G~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVV-GQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEE-ESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHH
Confidence 45666 443 5999999 9999999999886432 357999999865 66777777665422111 11
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
+.+.+++. ....+ +.+.+||||||||+++|||++. ++++|||+++||+.... +++.+.+. .+||+|.|..
T Consensus 81 ~~i~~~~~----~~~~~-~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 81 EPIEKYIN----EQYEK-FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHH----HHHHH-HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEETTG
T ss_pred HHHHHHHH----HHHHh-hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEecc
Confidence 23333333 22223 3568999999999999999886 99999999999998844 44455554 7888888876
Q ss_pred H
Q psy2681 154 R 154 (211)
Q Consensus 154 ~ 154 (211)
+
T Consensus 151 D 151 (270)
T 3sop_A 151 D 151 (270)
T ss_dssp G
T ss_pred c
Confidence 4
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.53 E-value=2e-16 Score=137.15 Aligned_cols=154 Identities=9% Similarity=0.040 Sum_probs=115.2
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..+.++ |.+ ++||+++ ++|.++|++|+|.... +..++|++|++. .+++..++.+++
T Consensus 156 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHHHHHHHHH
T ss_pred CCeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChhhhHHHHH
Confidence 35567777 776 5999999 9999999999997532 124899999752 145666777776
Q ss_pred Hhhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 66 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 66 ~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.... +.. ..+++.+|+.+..++ ++.+|| |||++||||++.+|+ +|+|| ||+|||+.++. ..+-..
T Consensus 234 ~~~~~~~~d----~~lldt~Gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~ 302 (359)
T 2og2_A 234 KRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEV 302 (359)
T ss_dssp HHHHHTTCS----EEEEECCCCSSCCHH-HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHH
T ss_pred HHHHhCCCH----HHHHHhcCCChhhhh-HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHh
Confidence 5321 111 134677888765554 678999 999999999999999 99999 99999998653 333334
Q ss_pred cCCeEEEEec---------ChHHHHhhCCeEEEEeCCcee
Q psy2681 142 YQGGVILVSH---------DERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 142 ~~~tiiivsH---------d~~~~~~~~~~v~~l~~g~i~ 172 (211)
.+.|+|++|| .+..+......+.++..|..+
T Consensus 303 ~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 303 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 6789999999 467777788899999888653
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.50 E-value=9.6e-17 Score=136.73 Aligned_cols=150 Identities=13% Similarity=0.018 Sum_probs=105.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh--cCC----CHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNL----PYEK 75 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~--~~~----~~~~ 75 (211)
...+..+.+++.-. ++|||++ |+|+++|+.|. ..+++++|++. +++. ++.+++... ++. ..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~ 157 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRA 157 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHH
Confidence 44566788884443 5999999 99999998774 46899999864 5555 787776422 121 2355
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
+.+.++.++ .+..+. ++..|||||+||+++|++++.+|++||+|||+..+|+.. ..+.+.-...|+++|+.+.
T Consensus 158 ~~~~L~~l~-~~~~~~-~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~ 230 (312)
T 3aez_A 158 LMRFVTSVK-SGSDYA-CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIED 230 (312)
T ss_dssp HHHHHHHHH-TTCSCE-EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHH
T ss_pred HHHHHHHhC-CCcccC-CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHH
Confidence 677888887 444333 577999999999999999999999999999999998521 1233333456888888866
Q ss_pred HH-hhCCeEEEEeCC
Q psy2681 156 IR-ETDCELWALEKK 169 (211)
Q Consensus 156 ~~-~~~~~v~~l~~g 169 (211)
.. +...|.+.+.++
T Consensus 231 ~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 231 IEQWYVSRFLAMRTT 245 (312)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 43 334454444444
No 88
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.47 E-value=2.8e-18 Score=137.44 Aligned_cols=149 Identities=9% Similarity=-0.042 Sum_probs=96.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceE--Ee-----cCCeEEEEEeCCCCCCCCCCCCHHHHHH-------
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGEL--RK-----SPRLRIGKFDQHSGEHLFPDDTPCEYLM------- 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i--~~-----~~~~~ig~v~q~~~~~l~~~~t~~e~~~------- 66 (211)
+..|..+.++ |-. ++|||++ |+|+++...+.+ .. ..+..++|+||++. +++.+++.+++.
T Consensus 17 i~~Gei~~l~-GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 17 AAVGRVVVLS-GPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGELLEWAEIHG 93 (207)
T ss_dssp --CCCEEEEE-CSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTCEEEEEEEGG
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCCceeehhhcC
Confidence 4567778888 554 5999999 999985322221 10 01235889998764 334333333221
Q ss_pred --hhcCCCHHHHHHH----------HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC----CHH
Q psy2681 67 --KLFNLPYEKSRRQ----------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL----DIE 130 (211)
Q Consensus 67 --~~~~~~~~~~~~~----------l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL----D~~ 130 (211)
..++.+.....+. ++.+|+....+. ++..|| +|+.+|++++|||||+++ |+.
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~ 161 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-MPEAVT-----------VFLAPPSWQDLQARLIGRGTETADV 161 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-CTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-cCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHH
Confidence 1112223222222 334444433333 567777 899999999999999998 788
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
.+..+.++++++ +.|+|+||||++++..+|+++++|.
T Consensus 162 ~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 162 IQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 888898887654 4699999999999999999998874
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.44 E-value=3e-14 Score=122.14 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=83.5
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
..+..+.+++.-. ++|||++ ++|+++|++|.|.......+ .+..... .
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---------~~~~~~~---------------------~ 218 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---------VFKHHKN---------------------Y 218 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---------CCSSCSS---------------------E
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---------ccccchh---------------------E
Confidence 3466777775553 5999999 99999999999987542100 0000000 0
Q ss_pred CCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--C-CeEEEEecChHHHHhh
Q psy2681 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--Q-GGVILVSHDERLIRET 159 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~-~tiiivsHd~~~~~~~ 159 (211)
+++ +.. |||+||++||+||..+|+++++||||+. + +.+.|+.+ + .|+|++||+.+ +...
T Consensus 219 i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~~l~~~~~g~~tvi~t~H~~~-~~~~ 280 (330)
T 2pt7_A 219 TQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---E----AYDFYNVLCSGHKGTLTTLHAGS-SEEA 280 (330)
T ss_dssp EEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHHHHHHHHTTCCCEEEEEECSS-HHHH
T ss_pred EEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHHHHHHHhcCCCEEEEEEcccH-HHHH
Confidence 000 001 8999999999999999999999999982 2 33444433 3 47999999999 6678
Q ss_pred CCeEEEEeCCce
Q psy2681 160 DCELWALEKKNI 171 (211)
Q Consensus 160 ~~~v~~l~~g~i 171 (211)
++|+++|.+|+.
T Consensus 281 ~dri~~l~~g~~ 292 (330)
T 2pt7_A 281 FIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHTSG
T ss_pred hhhheehhcCCc
Confidence 899999988864
No 90
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.41 E-value=2.1e-16 Score=134.16 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=97.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHH-HHHhhcCCCHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE-YLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e-~~~~~~~~~~~~~~~~ 79 (211)
.+..|..+.+++--. ++|||++ |+|++ +|+| ++|++|.+. ++. .++.+ ++....... ..+.+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~--lf~-~ti~~~ni~~~~~~~-~~~~~~ 187 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSH--FWL-ASLADTRAALVDDAT-HACWRY 187 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSG--GGG-GGGTTCSCEEEEEEC-HHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCccc--ccc-ccHHHHhhccCcccc-HHHHHH
Confidence 356788889984443 5999999 99998 8888 356777653 333 24443 332211112 245556
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 159 (211)
++.+ +...++ ...|||||||| |||++.+|++|| |++||+.+...+.. +||++..+ ..
T Consensus 188 i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~ 244 (305)
T 2v9p_A 188 FDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RF 244 (305)
T ss_dssp HHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-EC
T ss_pred HHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-Hh
Confidence 6664 443332 57899999999 999999999999 99999998887752 28998875 57
Q ss_pred CCeEEEEeCCceeeecCChHHH
Q psy2681 160 DCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 160 ~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|++ +|++|+++ ..|+..++
T Consensus 245 aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 245 EQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp CCCC-CCC---CC-CCCCHHHH
T ss_pred CCEE-EEeCCEEE-EeCCHHHH
Confidence 8999 99999986 47888777
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=4.9e-15 Score=117.54 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=101.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEec---------CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS---------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~---------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~ 74 (211)
|.++.++ |-+ ++|||++ ++|.++ ++| +... .+.++||++|+.. ... .++...
T Consensus 1 G~~i~i~-G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~----g~~---~~l~~~------ 64 (189)
T 2i3b_A 1 ARHVFLT-GPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS----GTR---GPLSRV------ 64 (189)
T ss_dssp CCCEEEE-SCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT----SCE---EEEEEC------
T ss_pred CCEEEEE-CCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc----cce---ehhhcc------
Confidence 3467777 654 5999999 999998 888 6432 2457899988642 111 111100
Q ss_pred HHHHHHHhCCCCC-----ccccCCCCCCChHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcC
Q psy2681 75 KSRRQLGMFGLPS-----YAHTIPIRDLSGGQKARV-ALAE---LTLNNPDILILDE--PTNNLDIESIDALAEAIKNYQ 143 (211)
Q Consensus 75 ~~~~~l~~~gl~~-----~~~~~~~~~LSgG~kqRv-~iar---al~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~ 143 (211)
.++.++ ... ++...+|+|||+++ ++++ |++.+|+++|+|| |++.+|+...+.+.+++....
T Consensus 65 -------~~~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~ 136 (189)
T 2i3b_A 65 -------GLEPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG 136 (189)
T ss_dssp -------CCCCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS
T ss_pred -------cccCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC
Confidence 011111 112 24557999999988 4444 5899999999999 999999999999999998765
Q ss_pred CeEE---EEecCh--HHHHhhCCeEEEEeCCceeeec-CChHHHHHHHHHHhh
Q psy2681 144 GGVI---LVSHDE--RLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTSLG 190 (211)
Q Consensus 144 ~tii---ivsHd~--~~~~~~~~~v~~l~~g~i~~~~-g~~~~~~~~~~~~~~ 190 (211)
.+|+ .|||+. .++.+++ .+.+|+++... .+.+...+++++.+.
T Consensus 137 ~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 137 TIILGTIPVPKGKPLALVEEIR----NRKDVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp CCEEEECCCCCSSCCTTHHHHH----TTCCSEEEECCSSSGGGHHHHHHHHHT
T ss_pred cEEEEEeecCCCCchHHHHHHe----ecCCcEEEEeChHhHHHHHHHHHHHHH
Confidence 4453 455987 5555443 34566665543 466666666655543
No 92
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.34 E-value=4.4e-14 Score=125.44 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=108.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC-------------------eEEEEEeCCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR-------------------LRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~-------------------~~ig~v~q~~~~~l~~~~t 60 (211)
+.+..|.++.++++-. ++|||++ |+|+..|+.|.+...+. +.++|++|... .+++.++
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~-~~~~~~~ 230 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV-SPLLRMQ 230 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS-CHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC-CHHHHHH
Confidence 3567889999997775 5999999 99999999998875432 35899999642 2344556
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhCC--CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 61 PCEYLMKLFNLPYEKSRRQLGMFG--LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 61 ~~e~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+++.... +++...+ .....+ .+..||+|| ||++|| +.+|++ |+|||+.+...+.++
T Consensus 231 v~~~~~~~a--------e~~~~~~~~v~~~ld--~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~l 290 (438)
T 2dpy_A 231 GAAYATRIA--------EDFRDRGQHVLLIMD--SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPAL 290 (438)
T ss_dssp HHHHHHHHH--------HHHHTTTCEEEEEEE--CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHhCCCCHHHHHH--hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHH
Confidence 666553210 1111111 111122 367899999 999999 888988 999999999999999
Q ss_pred HHhcC------C------eEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 139 IKNYQ------G------GVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 139 l~~~~------~------tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
+.+.. + ||+++|||++ ..+||+++++.+|+++
T Consensus 291 l~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 291 VERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp HTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred HHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 97652 2 8999999998 5678888888888775
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.33 E-value=1.6e-13 Score=132.66 Aligned_cols=132 Identities=10% Similarity=0.097 Sum_probs=89.0
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEE-EEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCC
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 84 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig-~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~g 84 (211)
++-+|.|-+ ++|||+| + |++.+. .++| ||||++. .+++.+++ +.++|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aqiG~~Vpq~~~-----~l~v~d~I--------------~~rig 840 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQMGCYVPAEVC-----RLTPIDRV--------------FTRLG 840 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHH---------HTTTCCEESSEE-----EECCCSBE--------------EEECC
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHH---------hheeEEeccCcC-----CCCHHHHH--------------HHHcC
Confidence 445555776 5999999 8 998762 2345 8888642 12222221 22345
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH-HHHHHHHHh---c-CCeEEEEecChHHHHhh
Q psy2681 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI-DALAEAIKN---Y-QGGVILVSHDERLIRET 159 (211)
Q Consensus 85 l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~-~~l~~~l~~---~-~~tiiivsHd~~~~~~~ 159 (211)
+.+.... ..+.+|++|++ +++|++++.+|+++||||||+|+|+... ..++.++.. . +.++|++||+.+++..+
T Consensus 841 ~~d~~~~-~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 841 ASDRIMS-GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp ----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT
T ss_pred CHHHHhh-chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHh
Confidence 5444332 45678888876 9999999999999999999999999874 334555443 3 67999999999999999
Q ss_pred CCeEEEEeCCcee
Q psy2681 160 DCELWALEKKNIR 172 (211)
Q Consensus 160 ~~~v~~l~~g~i~ 172 (211)
++++.++ +|++.
T Consensus 919 ~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 919 SQNVAVR-LGHMA 930 (1022)
T ss_dssp SSCSSEE-EEEEE
T ss_pred CCcceee-cCeEE
Confidence 9888765 45553
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.32 E-value=2.5e-13 Score=127.78 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=85.2
Q ss_pred cCeeeeecCCC--Ccccccc-ccCccc-CCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELT-PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~-p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
+..+.++ |-+ ++|||+| ++|+.. +..|.+....+..+++++| ++...++.+++
T Consensus 576 g~i~~I~-GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-----i~~~~~~~d~l----------------- 632 (765)
T 1ewq_A 576 HELVLIT-GPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-----IYTRIGASDDL----------------- 632 (765)
T ss_dssp SCEEEEE-SCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-----EEEECCC---------------------
T ss_pred CcEEEEE-CCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH-----hhccCCHHHHH-----------------
Confidence 3444444 665 5999999 999874 6788764333345666554 23333332221
Q ss_pred CCCCCccccCCCCCCChHHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHH-HHHHHHHHhcCCeEEEEecChHHH
Q psy2681 83 FGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEP---TNNLDIESI-DALAEAIKNYQGGVILVSHDERLI 156 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~~-~~l~~~l~~~~~tiiivsHd~~~~ 156 (211)
...+|+||++++.+++++ +.+|+++||||| |++||+.+. ..+.+.|.+.+.++|++||+.++.
T Consensus 633 -----------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 633 -----------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 701 (765)
T ss_dssp -------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred -----------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 124799999999999999 999999999999 999999886 578888888778999999999886
Q ss_pred H
Q psy2681 157 R 157 (211)
Q Consensus 157 ~ 157 (211)
.
T Consensus 702 ~ 702 (765)
T 1ewq_A 702 A 702 (765)
T ss_dssp T
T ss_pred H
Confidence 4
No 95
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.21 E-value=6.3e-16 Score=124.96 Aligned_cols=152 Identities=10% Similarity=0.085 Sum_probs=96.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCH-HHHH--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTP-CEYL-- 65 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~-~e~~-- 65 (211)
+.+..|..+.+++--. ++|||++ |+|++ | |++.... +..++|+||++. +++.++. .+++
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~ 92 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT--IFEDKLKNEDFLEY 92 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHH--HHHHHHHTTCEEEE
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHH--HHHHhhhccchhhh
Confidence 3466777888884333 5999999 99988 6 8886511 234677777653 2221110 0000
Q ss_pred ----HhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHH-----HHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 66 ----MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL-----AELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 66 ----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~i-----aral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...++.+...+.++++...+. .. ..+|||||+||++| +++++.+|++++|||||+++|..+...+.
T Consensus 93 ~~~~~~~~g~~~~~i~~~l~~~~~~-il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 93 DNYANNFYGTLKSEYDKAKEQNKIC-LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEE-EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred hhcccccCCCcHHHHHHHHhCCCcE-EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 011222345566777764431 11 14799999999999 89999999999999999999998877777
Q ss_pred HHHHhc----------CCeEEEEecChHHHHhhCCeE
Q psy2681 137 EAIKNY----------QGGVILVSHDERLIRETDCEL 163 (211)
Q Consensus 137 ~~l~~~----------~~tiiivsHd~~~~~~~~~~v 163 (211)
+.+.+. ..+.|+++||++.+....+++
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 766532 235666667766665555444
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.21 E-value=8.1e-15 Score=116.89 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=104.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC----CCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSR 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~----~~~~~~~ 77 (211)
...+..+.++++.. ++|||++ ++|.+.| .++|++|++...-...+++.++....++ ...+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 34566788887775 5999999 9998876 4789999864111245677666532221 2345677
Q ss_pred HHHHhCCCCCccccCCCCCCChHHH----HHHHHHHHHhcCCCeEEEeCCCCC-------CCHHHHHHHHHHHHhc----
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQK----ARVALAELTLNNPDILILDEPTNN-------LDIESIDALAEAIKNY---- 142 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~k----qRv~iaral~~~p~lllLDEPt~g-------LD~~~~~~l~~~l~~~---- 142 (211)
+.++.+++.+.... ++.++|+|++ ||++++++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~~~-~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPVEM-PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCEEE-CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcCC-CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 78888888776665 7889999974 688999999999999999999999 9998888888877653
Q ss_pred CCeEEEEecCh
Q psy2681 143 QGGVILVSHDE 153 (211)
Q Consensus 143 ~~tiiivsHd~ 153 (211)
+.|++.++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999985
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.17 E-value=9.4e-13 Score=113.58 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=101.2
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC------------------eEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR------------------LRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~------------------~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|.++.++++-. ++|||++ |+|+..|+.|.+...+. ..+.+++|... ..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-------~~ 138 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-------PA 138 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-------CH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-------CH
Confidence 3467889999997775 5999999 99999999998764321 23555555321 11
Q ss_pred HHHHHhhcCCCHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 62 CEYLMKLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 62 ~e~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.+.+..... .....+++...+-.- ...+ .+..||+|| ||+++| +.+|++ |+|||+.....+.+++.
T Consensus 139 ~~r~~~~~~--~~~~ae~~~~~~~~vl~~ld-~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~lle 205 (347)
T 2obl_A 139 LERMKAAFT--ATTIAEYFRDQGKNVLLMMD-SVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLE 205 (347)
T ss_dssp HHHHHHHHH--HHHHHHHHHTTTCEEEEEEE-THHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHHHHHhccccHHHHHh-hHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHH
Confidence 111110000 001111211111100 0012 578999999 899999 688887 99999999999999998
Q ss_pred hc-----CC-----eEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 141 NY-----QG-----GVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 141 ~~-----~~-----tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+. +. ||+++|||++ ..+||+++++.+|+++.
T Consensus 206 r~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 206 RAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred HHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 65 23 7999999998 67899999999998863
No 98
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.13 E-value=4.7e-11 Score=114.38 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=63.1
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHH--hcCCCeEEEeCCCCCCCHHHHHHH-HHH---HHh-cCCeEEEEec
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLDIESIDAL-AEA---IKN-YQGGVILVSH 151 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral--~~~p~lllLDEPt~gLD~~~~~~l-~~~---l~~-~~~tiiivsH 151 (211)
++.++|+.+. ....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ +.+ +.+ .+.++|++||
T Consensus 708 i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH 783 (934)
T 3thx_A 708 ILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH 783 (934)
T ss_dssp EEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 3445555432 3456888888888888888 999999999999999999887666 333 333 3679999999
Q ss_pred ChHHHHhhCCeEEEEeCCcee
Q psy2681 152 DERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~~g~i~ 172 (211)
+.+.. .+++++..+.+|++.
T Consensus 784 ~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 784 FHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp CGGGG-GGGGTCTTEEEEEEE
T ss_pred cHHHH-HHhcccceeEeeEEE
Confidence 97665 688888777777663
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.12 E-value=6.3e-11 Score=113.27 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=55.2
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHHh----cCCeEEEEecChH
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIKN----YQGGVILVSHDER 154 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~----~~~tiiivsHd~~ 154 (211)
+..+|+.+.... ..+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+. .++.. .+.|+|++|||.+
T Consensus 720 ~~~ig~~d~l~~-~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 720 FTRMGAADNIYK-GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp EEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHhCChHHHHHH-hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 344555444443 568899999999999999 8999999999999999999887775 44432 3679999999987
Q ss_pred HHH
Q psy2681 155 LIR 157 (211)
Q Consensus 155 ~~~ 157 (211)
.+.
T Consensus 798 l~~ 800 (918)
T 3thx_B 798 VCE 800 (918)
T ss_dssp GGG
T ss_pred HHH
Confidence 653
No 100
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.10 E-value=7.4e-11 Score=98.14 Aligned_cols=140 Identities=6% Similarity=-0.027 Sum_probs=85.1
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec----CCeEEEEEeCCCCCCCCCCCCHHHHHHh-hcCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS----PRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSR 77 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~----~~~~ig~v~q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~ 77 (211)
.+..+.++ |-. ++|||++ +++.+. .|.+... ....+.|+..+.. . ..+...+.. ..........
T Consensus 29 ~G~i~~i~-G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~~~ 100 (279)
T 1nlf_A 29 AGTVGALV-SPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEERQ 100 (279)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhhhh
Confidence 34455555 443 5999999 877554 3333111 1234666654321 0 011112221 1233445556
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHHH---HHHHHHHH----hcCCeEEE
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN--NLDIESI---DALAEAIK----NYQGGVIL 148 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~--gLD~~~~---~~l~~~l~----~~~~tiii 148 (211)
++++.+++...... ++..||+|++|++ ++++.+|+++++||||+ ++|.... ..+.+.|+ +.+.|||+
T Consensus 101 ~~~~~l~l~~~~~~-~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 101 AVADGLLIQPLIGS-LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp HHHHHEEECCCTTS-CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hccCceEEeecCCC-CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 67788888766554 7899999997765 68888999999999999 9997443 55555554 44789999
Q ss_pred EecChHHHH
Q psy2681 149 VSHDERLIR 157 (211)
Q Consensus 149 vsHd~~~~~ 157 (211)
+||+.....
T Consensus 177 i~H~~~~~~ 185 (279)
T 1nlf_A 177 LHHASKGAA 185 (279)
T ss_dssp EEEC-----
T ss_pred EecCCCccc
Confidence 999987764
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.09 E-value=1.3e-13 Score=124.74 Aligned_cols=143 Identities=8% Similarity=-0.070 Sum_probs=88.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-c--cCcccCCcceEEecCC----------eEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-P--KGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i--~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+++--. ++|||++ + +|+.+|++|.+..... ..+||++|++.. ..+ +...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~--~~~------l~~~ 106 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD--EGK------LFIL 106 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH--TTS------EEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc--cCc------EEEE
Confidence 345677778884443 5999999 5 6999999998875431 124444443210 000 0000
Q ss_pred cCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh-cCCCeEEEeCCCC-----CCCHHHHHHHHHHHHhc
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-NNPDILILDEPTN-----NLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~-~~p~lllLDEPt~-----gLD~~~~~~l~~~l~~~ 142 (211)
.... ..... .....+.-+. +.-.+..+|. .+|+++++||||+ +||+..+..+.++++.+
T Consensus 107 ~~~~-------------~~~~~-~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 107 DASP-------------DPEGQ-EVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp ECCC-------------CSSCC-SCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred ecCc-------------ccchh-hhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0000 00000 0112233332 3344455553 5799999999998 46999999998888654
Q ss_pred ---CCeEEEEecChHHH---------HhhCCeEEEEeC
Q psy2681 143 ---QGGVILVSHDERLI---------RETDCELWALEK 168 (211)
Q Consensus 143 ---~~tiiivsHd~~~~---------~~~~~~v~~l~~ 168 (211)
+.|||++||+++.+ ..+||++++|++
T Consensus 172 ~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 172 KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 67999999999884 566999999988
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.07 E-value=8.3e-12 Score=103.60 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=78.1
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCC-cceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPN-KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
..+..+.++ |-. ++|||++ ++|.++|+ +|+|..... .++|++|... .+ ...
T Consensus 23 ~~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~-~~------------v~q---------- 77 (261)
T 2eyu_A 23 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKK-SI------------VNQ---------- 77 (261)
T ss_dssp CSSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSS-SE------------EEE----------
T ss_pred CCCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcc-ee------------eeH----------
Confidence 345556666 554 5999999 99999998 899875432 1334433221 00 000
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 160 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 160 (211)
..+|++. ..| |++||++|..+|+++++|||| |+++...+.+.. ..+.+|+++||+.+. ...+
T Consensus 78 ~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~~-~~~~ 139 (261)
T 2eyu_A 78 REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTA-IDTI 139 (261)
T ss_dssp EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSH-HHHH
T ss_pred HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcchH-HHHH
Confidence 1333321 122 899999999999999999999 999877666654 347799999999873 4555
Q ss_pred CeEE
Q psy2681 161 CELW 164 (211)
Q Consensus 161 ~~v~ 164 (211)
++++
T Consensus 140 dri~ 143 (261)
T 2eyu_A 140 HRIV 143 (261)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.07 E-value=3.1e-10 Score=94.95 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCCChHH-HHHHHHHHHHhcCCCeEEEeCCCC---C---CCH-HHHHHHHHHHHh----cCCeEEEEecCh--H-----
Q psy2681 94 IRDLSGGQ-KARVALAELTLNNPDILILDEPTN---N---LDI-ESIDALAEAIKN----YQGGVILVSHDE--R----- 154 (211)
Q Consensus 94 ~~~LSgG~-kqRv~iaral~~~p~lllLDEPt~---g---LD~-~~~~~l~~~l~~----~~~tiiivsHd~--~----- 154 (211)
+..+|.++ +||+. |+++..+|+++|+||||+ + +|. .....+.+.|++ .+.|||++||+. +
T Consensus 127 ~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~ 205 (296)
T 1cr0_A 127 FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAH 205 (296)
T ss_dssp CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--------
T ss_pred CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccc
Confidence 46789998 67777 999999999999999999 5 455 555667766654 478999999995 4
Q ss_pred ---------------HHHhhCCeEEEEeCCce
Q psy2681 155 ---------------LIRETDCELWALEKKNI 171 (211)
Q Consensus 155 ---------------~~~~~~~~v~~l~~g~i 171 (211)
.+...||++++|.+|+.
T Consensus 206 ~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 206 EEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CCC---CHHHHCSEEEEEEEC--
T ss_pred ccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999988764
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.06 E-value=2.7e-10 Score=91.03 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=79.6
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
..+..+.+++--. ++|||++ ++|...+..|.... ...+-|+..+.. +.... ...+....+.... .+.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~--~~~~i~~~~~~~---~~~~~-i~~~~~~~~~~~~---~~~~~ 93 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL--NGSVIWIDTENT---FRPER-IREIAQNRGLDPD---EVLKH 93 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC--SCEEEEEESSSC---CCHHH-HHHHHHHTTSCHH---HHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCC--CCEEEEEECCCC---CCHHH-HHHHHHHcCCCHH---HHhhc
Confidence 4456667773333 5999999 99966654432211 112334433221 11111 1112122222222 22222
Q ss_pred CCCCCccccCCCCCCChHHH-HHHHHHHHHhc-------CCCeEEEeCCCCCCCHH-------HH-----HHHHHHH---
Q psy2681 83 FGLPSYAHTIPIRDLSGGQK-ARVALAELTLN-------NPDILILDEPTNNLDIE-------SI-----DALAEAI--- 139 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~k-qRv~iaral~~-------~p~lllLDEPt~gLD~~-------~~-----~~l~~~l--- 139 (211)
+. ....++.+++ +.+..+.+++. +|+++++||||+++|+. .. ..+.+.|
T Consensus 94 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~ 165 (231)
T 4a74_A 94 IY--------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRL 165 (231)
T ss_dssp EE--------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred EE--------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 11 1123455444 33666666665 99999999999999983 11 2344444
Q ss_pred -HhcCCeEEEEecCh----HHHHhhCCeEEEEeCCc
Q psy2681 140 -KNYQGGVILVSHDE----RLIRETDCELWALEKKN 170 (211)
Q Consensus 140 -~~~~~tiiivsHd~----~~~~~~~~~v~~l~~g~ 170 (211)
++.+.|||++||+. ..+...+++++++++|+
T Consensus 166 ~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 166 ANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 34478999999954 45889999999998764
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.04 E-value=4.2e-12 Score=107.63 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=87.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..+.++ |-. ++|||++ ++|.++|++|+|.... +..++|++|++. +++..++.+++.
T Consensus 102 g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 102 GRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 4567777 665 5999999 9999999999997532 124889999864 566667777664
Q ss_pred hhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 67 KLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 67 ~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
... +.. ..+++..|..+... ..++...+||++||||++.+|+ ++.|| |+++.+.. ..+..+-...
T Consensus 179 ~~~~~~~d----~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLHTKH----NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAV 247 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHH
T ss_pred HHHhCCCC----EEEecCCCCCCchH----HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHc
Confidence 211 100 01233445433222 2344555899999999999999 66677 66665432 2333333445
Q ss_pred CCeEEEEecCh
Q psy2681 143 QGGVILVSHDE 153 (211)
Q Consensus 143 ~~tiiivsHd~ 153 (211)
+.|+|++||+.
T Consensus 248 ~~t~iivTh~d 258 (304)
T 1rj9_A 248 GLTGVIVTKLD 258 (304)
T ss_dssp CCSEEEEECTT
T ss_pred CCcEEEEECCc
Confidence 78999999984
No 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.98 E-value=1.3e-11 Score=100.99 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=92.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEe-cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CC------
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRK-SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL------ 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~-~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~------ 71 (211)
+..+..+.++++.. ++|||++ ++|.+ |.+.. ..+..++|++|+. ++..+++.++..... ..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKALKGQYNFDHPDAF 94 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHHTTCCCTTSGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhhccCCCCCCcccc
Confidence 45567788887775 5999999 88765 32211 1234689999974 566788877654221 11
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEEEe
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGGVILVS 150 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~~~tiiivs 150 (211)
..+.+.+.++.+ ...... ++..||+||+||+.+ ++++.+|+++|+|||....+.. +.+ .+.+|+++|
T Consensus 95 ~~~~~~~~L~~l--~~~~~~-~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~~~~~i~v~t 162 (245)
T 2jeo_A 95 DNDLMHRTLKNI--VEGKTV-EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDMFHLRLFVDT 162 (245)
T ss_dssp CHHHHHHHHHHH--HTTCCE-EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTTCSEEEEEEC
T ss_pred cHHHHHHHHHHH--HCCCCe-ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHhcCeEEEEEC
Confidence 123344555543 222333 678999999999988 6888999999999999888764 222 367999999
Q ss_pred cChHHH-HhhCC
Q psy2681 151 HDERLI-RETDC 161 (211)
Q Consensus 151 Hd~~~~-~~~~~ 161 (211)
|+...+ ..++.
T Consensus 163 h~~~~~~r~~~r 174 (245)
T 2jeo_A 163 DSDVRLSRRVLR 174 (245)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 974444 44443
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.97 E-value=3.5e-13 Score=114.04 Aligned_cols=134 Identities=12% Similarity=0.033 Sum_probs=70.0
Q ss_pred eeeeecCCC--Ccccccc-ccCc-ccCCcceEEec--------CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC-HHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGE-LTPNKGELRKS--------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP-YEK 75 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~-~~p~~G~i~~~--------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~-~~~ 75 (211)
.+.++ |-. ++|||++ +.|. ..|++| +... ....+++++|... +...+++++......... .+.
T Consensus 20 ~I~lv-G~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~--~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 20 TLMVV-GESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG--VKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp EEEEE-EETTSSHHHHHHHHHC-------------------------CEEEEC-----CCEEEEEEEEC-----------
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC--cccCcchhhhhhhhhhcCcHHH
Confidence 45555 543 6999999 8997 888888 4211 1234678888653 344445444322110000 011
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC-CCHHHHHHHHHHHHh-cCCeEEEEecCh
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN-LDIESIDALAEAIKN-YQGGVILVSHDE 153 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g-LD~~~~~~l~~~l~~-~~~tiiivsHd~ 153 (211)
...+... +....+. ++.++|||||||+.+|||++ ++++||||++ ||+.... ++..+.. .+.++|+++||+
T Consensus 96 ~~~l~~~--l~~~~~~-~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISY--IDEQFER-YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVA-FMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHH--HHHHHHH-HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHH-HHHHHTTTSCEEEEECCGGG
T ss_pred HHHHHHH--HHHHHHH-HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHH-HHHHHHhcCCEEEEEEeCCC
Confidence 1111111 1111222 57889999999999999986 9999999985 9998753 3333332 256899999997
Q ss_pred H
Q psy2681 154 R 154 (211)
Q Consensus 154 ~ 154 (211)
.
T Consensus 168 ~ 168 (301)
T 2qnr_A 168 L 168 (301)
T ss_dssp S
T ss_pred C
Confidence 3
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.94 E-value=1.5e-09 Score=86.49 Aligned_cols=74 Identities=7% Similarity=0.021 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCC--CHHHHHHHHHHHHh----cCCeEEEEecCh--------HHHHhh
Q psy2681 96 DLSGGQKARVALAELTLNNPD--ILILDEPTNNL--DIESIDALAEAIKN----YQGGVILVSHDE--------RLIRET 159 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~~~p~--lllLDEPt~gL--D~~~~~~l~~~l~~----~~~tiiivsHd~--------~~~~~~ 159 (211)
..|.++.++...+.+...+|+ ++++||||+++ |+.....+.+.|++ .+.|||++||+. ..+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 459999998888888888999 99999999888 99888887777754 367999999999 458889
Q ss_pred CCeEEEEeCC
Q psy2681 160 DCELWALEKK 169 (211)
Q Consensus 160 ~~~v~~l~~g 169 (211)
||++++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.88 E-value=6.5e-11 Score=109.00 Aligned_cols=137 Identities=19% Similarity=0.279 Sum_probs=81.3
Q ss_pred eeeecCCC-Ccccccc-ccCcccC-CcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC
Q psy2681 10 IAVLQGLR-NPLSFIK-PKGELTP-NKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 72 (211)
Q Consensus 10 ~~~i~~~~-~~sTLl~-i~G~~~p-~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~ 72 (211)
+.+++.-. ++|||++ |+|+..| ++|.|+..+ +..+||++|++. +++..++.+++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~~---- 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINKA---- 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHHH----
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc--CCCHHHHHHHHHHH----
Confidence 66663333 5999999 9999988 799885321 346899999864 66767776665321
Q ss_pred HHHHHHHHHh--CCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCC------CCCCCHHHHHHHHHHHHhc--
Q psy2681 73 YEKSRRQLGM--FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP------TNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 73 ~~~~~~~l~~--~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEP------t~gLD~~~~~~l~~~l~~~-- 142 (211)
...+.. .++.. +++.++.+....|+++|+||| |+|||+..+..+.+++.++
T Consensus 122 ----~~~~~~~~~~~s~---------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~ 182 (608)
T 3szr_A 122 ----QNAIAGEGMGISH---------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ 182 (608)
T ss_dssp ----HHHHHCSSSCCCS---------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred ----HHHhcCCccccch---------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence 111111 11111 112223334568999999999 9999999999999999875
Q ss_pred ---CCeEEEEecChHH--------HHhh----CCeEEEEeCCce
Q psy2681 143 ---QGGVILVSHDERL--------IRET----DCELWALEKKNI 171 (211)
Q Consensus 143 ---~~tiiivsHd~~~--------~~~~----~~~v~~l~~g~i 171 (211)
+.+++++|||.+. +..+ ...++++.++-+
T Consensus 183 ~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 183 RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 3488999999753 3333 244567766544
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.85 E-value=1.9e-09 Score=87.14 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC-----HHHHHHHHHHHH---hcCCeEEEEecChHHH---------Hhh
Q psy2681 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD-----IESIDALAEAIK---NYQGGVILVSHDERLI---------RET 159 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p~lllLDEPt~gLD-----~~~~~~l~~~l~---~~~~tiiivsHd~~~~---------~~~ 159 (211)
.+.++..+......-..+|+++++||||++|| +..+..+.++++ +.+.|||++||++..+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34555555555555568999999999999997 555665666664 4478999999999998 678
Q ss_pred C-CeEEEEeC
Q psy2681 160 D-CELWALEK 168 (211)
Q Consensus 160 ~-~~v~~l~~ 168 (211)
| |++++|++
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 8 99999953
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.82 E-value=2.5e-10 Score=98.69 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
+||+||.++|++|++|||| |.++...+.+.. ..+.+||+++|+.+.+ ..++|++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 777766666654 3478999999999887 5667877663
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.82 E-value=1.3e-10 Score=100.23 Aligned_cols=74 Identities=18% Similarity=0.074 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHh-------cCCCeEEEeCCCCCCCHHH------------HHHHHHHHH----hcCCeEEEEecChH
Q psy2681 98 SGGQKARVALAELTL-------NNPDILILDEPTNNLDIES------------IDALAEAIK----NYQGGVILVSHDER 154 (211)
Q Consensus 98 SgG~kqRv~iaral~-------~~p~lllLDEPt~gLD~~~------------~~~l~~~l~----~~~~tiiivsHd~~ 154 (211)
|.+++|++.++++++ .+|+++|+||||+++|+.. ...+...|. +.+.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999998 6899999999999999862 234444443 34789999999987
Q ss_pred HHHhhCCeEEEEeCCce
Q psy2681 155 LIRETDCELWALEKKNI 171 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i 171 (211)
.....+........|++
T Consensus 288 ~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 288 RPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp --------------CCC
T ss_pred ccccccCCccccCCcce
Confidence 65443333444445544
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.77 E-value=4e-11 Score=94.68 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCCcc-ccCCCCCCChHHHHH-HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 75 KSRRQLGMFGLPSYA-HTIPIRDLSGGQKAR-VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~-~~~~~~~LSgG~kqR-v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.+++...++.... .+ ++..+|+||+|| +..+++++.+|+++++|||||++|..+...+++.|.+.
T Consensus 128 ~~~~~~~~~~~~~~~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHTTCCEEEEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 345567777876543 44 678899999999 89999999999999999999999999999999988764
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.76 E-value=2.1e-08 Score=79.40 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCCChHH--HHHHHHHHHHhcC-CCeEEEeCCCCCCCHHH--------HHHHHHHH----HhcCCeEEEEecChH-----
Q psy2681 95 RDLSGGQ--KARVALAELTLNN-PDILILDEPTNNLDIES--------IDALAEAI----KNYQGGVILVSHDER----- 154 (211)
Q Consensus 95 ~~LSgG~--kqRv~iaral~~~-p~lllLDEPt~gLD~~~--------~~~l~~~l----~~~~~tiiivsHd~~----- 154 (211)
..+|+++ +++++.+++++.+ |+++++||||+.+|+.. ...+.+.| ++.+.|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3455654 5688888899986 99999999999999732 12333333 345789999999865
Q ss_pred --------HHHhhCCeEEEEeCC
Q psy2681 155 --------LIRETDCELWALEKK 169 (211)
Q Consensus 155 --------~~~~~~~~v~~l~~g 169 (211)
.+...||.+++|...
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 677899999999754
No 115
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.66 E-value=5.9e-09 Score=98.61 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH----HHHHHHh-cCCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKN-YQGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~----l~~~l~~-~~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.+|+||++. +.+...+.+|+++|||||++|+|+..... +.+.+.+ .+.++|++||+.+++ .+++++..+.++
T Consensus 668 stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~ 745 (800)
T 1wb9_A 668 STFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANV 745 (800)
T ss_dssp --CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEE
T ss_pred hhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEE
Confidence 4578887754 44455689999999999988888765444 3344444 367999999999765 466665444444
Q ss_pred c
Q psy2681 170 N 170 (211)
Q Consensus 170 ~ 170 (211)
.
T Consensus 746 ~ 746 (800)
T 1wb9_A 746 H 746 (800)
T ss_dssp E
T ss_pred E
Confidence 3
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=3.3e-09 Score=93.49 Aligned_cols=131 Identities=8% Similarity=-0.033 Sum_probs=70.3
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcce--EEe--c---CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC-HHHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGE--LRK--S---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP-YEKSR 77 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~--i~~--~---~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~-~~~~~ 77 (211)
.|.++ |-. ++|||++ ++|...|..|. +.. . ....+++++|.+. ++..+++++++....... .....
T Consensus 33 ~I~lv-G~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~--~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 33 TLMVV-GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG--VQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp EEEEE-CCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------CEEEEEEECC-----------CH
T ss_pred EEEEE-CCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC--cccceeeeechhhhhhccchhhHH
Confidence 35556 554 5999999 99998754441 110 0 1234778887654 444555544432111100 00011
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC---eEEEeCCC-CCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD---ILILDEPT-NNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~---lllLDEPt-~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
.+.+. .. ..++.+++||++|||+++.+|+ ++++|||| ++||+.....+ +.|.. +.+||+|.|-.
T Consensus 110 ~i~~~------i~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l-k~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 110 PVIDY------ID----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM-KRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp HHHHH------HH----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH-HHHTT-TSEEEEEEEST
T ss_pred HHHHH------HH----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH-HHHhc-cCcEEEEEEcc
Confidence 11111 11 1456778889999999999999 99999999 69999875433 44443 56777777754
Q ss_pred H
Q psy2681 154 R 154 (211)
Q Consensus 154 ~ 154 (211)
+
T Consensus 178 D 178 (418)
T 2qag_C 178 D 178 (418)
T ss_dssp T
T ss_pred c
Confidence 4
No 117
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.42 E-value=2.9e-10 Score=92.78 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=81.3
Q ss_pred CeeeeecCCC--Ccccccc-cc---CcccCCcceEEecC---C----eEEEEEeCCCCCCCCCCCCHHHHHHh-h-----
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PK---GELTPNKGELRKSP---R----LRIGKFDQHSGEHLFPDDTPCEYLMK-L----- 68 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~---G~~~p~~G~i~~~~---~----~~ig~v~q~~~~~l~~~~t~~e~~~~-~----- 68 (211)
..+.++ |.. ++|||++ ++ |...|+.|++.... . ..+++++|+.. +++..++.+++.. .
T Consensus 28 ~~i~l~-G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 28 LRAVIL-GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSL--LVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhcCC
Confidence 467777 664 5999999 99 99999999875431 1 12334455543 5566666666542 1
Q ss_pred -----cCC--CHHHHHHHHH--hCC------------CCCccccCCCCCCChHHHHHHHHHHHH-hcCCCeEEEe----C
Q psy2681 69 -----FNL--PYEKSRRQLG--MFG------------LPSYAHTIPIRDLSGGQKARVALAELT-LNNPDILILD----E 122 (211)
Q Consensus 69 -----~~~--~~~~~~~~l~--~~g------------l~~~~~~~~~~~LSgG~kqRv~iaral-~~~p~lllLD----E 122 (211)
.+. ....+..+.. .++ +..... +++..||| |+ +|+ +.+|++++|| |
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~-r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR-RWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT-EEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHc-CCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 111 2222333322 222 222222 36788999 55 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q psy2681 123 PTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 123 Pt~gLD~~~~~~l~~~l~~~ 142 (211)
||++||+.+...+.+.+.++
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999999999998888765
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.39 E-value=4.5e-09 Score=84.83 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=72.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC--CcceEEecCC-------eEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP--NKGELRKSPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p--~~G~i~~~~~-------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.|..|..+.++ |=. ++|||++ ++|..+| ..|.+....+ ..++|+||++. .|+.+++
T Consensus 12 ~~~~G~ii~l~-GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--~f~~~~~--------- 79 (219)
T 1s96_A 12 HMAQGTLYIVS-APSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--EFKEMIS--------- 79 (219)
T ss_dssp ---CCCEEEEE-CCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--HHHHHHH---------
T ss_pred cCCCCcEEEEE-CCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--HHHHHHh---------
Confidence 36677777777 554 5999999 9999986 5776654321 13455555431 1111111
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEe
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVS 150 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivs 150 (211)
.-.+.+... ....+.|--+++ +..++..++++||| ||+.+...+.+.+. .+.||+++|
T Consensus 80 -----------~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~t 137 (219)
T 1s96_A 80 -----------RDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILP 137 (219)
T ss_dssp -----------TTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEEC
T ss_pred -----------cCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEEC
Confidence 000000000 001111111222 45566678999999 99999999999887 367999999
Q ss_pred cChHHHHh
Q psy2681 151 HDERLIRE 158 (211)
Q Consensus 151 Hd~~~~~~ 158 (211)
|+++.+.+
T Consensus 138 h~~~~l~~ 145 (219)
T 1s96_A 138 PSKIELDR 145 (219)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 99998875
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.36 E-value=4.7e-08 Score=84.81 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=68.4
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCC-cceEEecCC-------eEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPN-KGELRKSPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~~~~-------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~ 74 (211)
.+..+.++ |-. ++|||++ ++|.+.|+ +|.|..... ..+++++|.
T Consensus 135 ~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~------------------------ 189 (372)
T 2ewv_A 135 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR------------------------ 189 (372)
T ss_dssp SSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE------------------------
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee------------------------
Confidence 34455666 554 5999999 99999987 788853210 011111110
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
.+|++ +..| +.+|+++|..+|+++++|||+ |++....+.+.. ..+.+|+.++|+.+
T Consensus 190 -------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 190 -------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT 245 (372)
T ss_dssp -------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS
T ss_pred -------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch
Confidence 12321 2344 469999999999999999999 777765544443 34678999999865
Q ss_pred HHHhhCCe
Q psy2681 155 LIRETDCE 162 (211)
Q Consensus 155 ~~~~~~~~ 162 (211)
+...++|
T Consensus 246 -~~~~~~r 252 (372)
T 2ewv_A 246 -AIDTIHR 252 (372)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3334344
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=2.9e-07 Score=78.25 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=65.3
Q ss_pred eecCCC--Ccccccc-ccC-cccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHH
Q psy2681 12 VLQGLR--NPLSFIK-PKG-ELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 78 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G-~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~ 78 (211)
++.|-. ++||+++ ++| +..|+.|.+.... ...++++++.+...+.. .. . .......+++
T Consensus 40 ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~----~~~~~~~~~~ 111 (354)
T 1sxj_E 40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP--SD--M----GNNDRIVIQE 111 (354)
T ss_dssp EEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC--C----------CCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH--hh--c----CCcchHHHHH
Confidence 445664 5999999 999 7788888875432 23456666653211111 10 0 0011112333
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERL 155 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 155 (211)
.++.+.-...... .. .||| +..+|+++|+|||++ ||+.+...+.+.+.+. +.++|++||+...
T Consensus 112 ~i~~~~~~~~~~~-~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 112 LLKEVAQMEQVDF-QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHHHHHhccccc-cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 3333211111111 11 4666 788999999999999 9999999999999886 3589999999643
No 121
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.23 E-value=2.7e-07 Score=79.63 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=68.3
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCccc-CCcceEEec--------CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELT-PNKGELRKS--------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY 73 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~-p~~G~i~~~--------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~ 73 (211)
.+..+.++ |-. ++|||++ |+|... |..|+|... ....+++++|+.. +++..++.++. .++...
T Consensus 214 ~G~~~~lv-G~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~--l~~l~~ 288 (358)
T 2rcn_A 214 TGRISIFA-GQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG--LWHLEP 288 (358)
T ss_dssp TTSEEEEE-CCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC--CCCCCH
T ss_pred CCCEEEEE-CCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh--hcCCCH
Confidence 35566666 665 5999999 999999 999998653 2346899998753 55555655531 233343
Q ss_pred HH----HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH
Q psy2681 74 EK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 111 (211)
Q Consensus 74 ~~----~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral 111 (211)
+. +.++++.+|+..+.+. ++.+|| ||+||++||+++
T Consensus 289 ~e~~~~~~e~l~~~gl~~f~~~-~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 289 EQITQGFVEFHDYLGHCKYRDC-KHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHHHTSGGGGGGTTCSSSTTC-CSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCchhcCC-CcccCC-HHHHHHHHHhcC
Confidence 33 3467888999877765 778999 999999999875
No 122
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.01 E-value=1.1e-07 Score=83.83 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=45.8
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH---HHHHhcCCeEEEEec
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA---EAIKNYQGGVILVSH 151 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~---~~l~~~~~tiiivsH 151 (211)
+..++++ . .++.+||+|++|++.++++|+.+|.++++ |.+|+.....+. +.+.+.+.+++++|.
T Consensus 240 L~vvDls---~-~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 240 LYVLDAA---D-EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp EEEEETT---S-CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hEEeCCc---c-CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4445554 2 36788999999999999999999999999 999987653322 333333556666553
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.99 E-value=1.3e-08 Score=79.20 Aligned_cols=135 Identities=10% Similarity=-0.037 Sum_probs=75.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCC---------eEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPR---------LRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~---------~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
=++..+..+.++ |.. ++|||++ ++|. |+.|.|..... ..++|++|... ...++.+++....
T Consensus 4 ~~i~~g~~i~l~-G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 4 TDDLGGNILLLS-GHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVA 76 (191)
T ss_dssp --CCTTEEEEEE-ECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEE-CCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHH
Confidence 366777778887 554 5999999 9997 77887765431 11233333210 1234444442110
Q ss_pred C-----CCHHHHHHHHHhCCCCCccc-cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC
Q psy2681 70 N-----LPYEKSRRQLGMFGLPSYAH-TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143 (211)
Q Consensus 70 ~-----~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 143 (211)
. .....+..++..+++..... ..++..+|+|++|++.++|++..+|+++ +|+.....+.+.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 77 GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0 00000000011112211110 2245689999999999999999999876 68888888888776542
Q ss_pred --CeEEEEec
Q psy2681 144 --GGVILVSH 151 (211)
Q Consensus 144 --~tiiivsH 151 (211)
..+++.|+
T Consensus 149 ~~~~~~i~t~ 158 (191)
T 1zp6_A 149 AFEHHVLPVS 158 (191)
T ss_dssp GGGGGEEECT
T ss_pred cccccEEECC
Confidence 23444454
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.98 E-value=4.7e-08 Score=84.30 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=81.2
Q ss_pred cCeeeeecCCC-Ccccccc-ccCcccCCc----ceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 7 KLRIAVLQGLR-NPLSFIK-PKGELTPNK----GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 7 ~~~~~~i~~~~-~~sTLl~-i~G~~~p~~----G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
+.++.+++.-. ++|||++ |+|++.|++ |++...... ..... ....... ..+...............
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~~--~~~~~~~-~~I~~~~q~~~~~~~t~~ 241 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDEQ--AMQYSDY-PQMALGHQRYIDYAVRHS 241 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCTT--SSCTTTH-HHHHHHHHHHHHHHHHHC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCcc--cCChhHH-HHHHHHHHHHHHHHHhcc
Confidence 77888884443 4999999 999999998 665432100 00000 0111122 222211100000000111
Q ss_pred HhCCC--CCccccCCCCCCChHHHHHHHHHHHHh-cCCCeEEEeC---CC------CCCCHHHHHHHHHHHHh----cCC
Q psy2681 81 GMFGL--PSYAHTIPIRDLSGGQKARVALAELTL-NNPDILILDE---PT------NNLDIESIDALAEAIKN----YQG 144 (211)
Q Consensus 81 ~~~gl--~~~~~~~~~~~LSgG~kqRv~iaral~-~~p~lllLDE---Pt------~gLD~~~~~~l~~~l~~----~~~ 144 (211)
+.+-+ .+.... .+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+..+.+.|.+ .+.
T Consensus 242 ~nl~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~ 320 (365)
T 1lw7_A 242 HKIAFIDTDFITT-QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKV 320 (365)
T ss_dssp SSEEEESSCHHHH-HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEeCCchHH-HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCC
Confidence 11101 111111 23456778888888888775 6999999999 65 58999999999888843 367
Q ss_pred eEEEEecChHHHHhhCCeEEEE
Q psy2681 145 GVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l 166 (211)
+|++++|. ....++++++.++
T Consensus 321 ~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 321 PYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCEEEECS-SHHHHHHHHHHHH
T ss_pred CEEEeCCC-CHHHHHHHHHHHH
Confidence 99999985 3445555554433
No 125
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.92 E-value=2.8e-09 Score=93.21 Aligned_cols=149 Identities=13% Similarity=0.213 Sum_probs=97.2
Q ss_pred cccCeeeeecCCC--Ccccccc-ccC------------cccCCcceEEecC------------CeEE---EEEeCCCCCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKG------------ELTPNKGELRKSP------------RLRI---GKFDQHSGEH 54 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G------------~~~p~~G~i~~~~------------~~~i---g~v~q~~~~~ 54 (211)
..+.++.++ |.. ++|||++ ++| .+.|+.|.+.... .+.+ .++.+.+.
T Consensus 18 ~~g~~vgiV-G~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG-- 94 (392)
T 1ni3_A 18 GNNLKTGIV-GMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG-- 94 (392)
T ss_dssp SSCCEEEEE-ECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG--
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc--
Confidence 446788888 664 5999999 988 6678999987643 2222 35666654
Q ss_pred CCCCCCHH-----HHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCC
Q psy2681 55 LFPDDTPC-----EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNL 127 (211)
Q Consensus 55 l~~~~t~~-----e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gL 127 (211)
++...+.. .++...... ..++..++..+ + ..+..+|++. +| ++.++|||++++
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~-----d~il~Vvd~~~--d-~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAV-----DAIYQVVRAFD--D-AEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTC-----SEEEEEEECCC--T-TCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHH-----HHHHHHHhccc--c-ceeeeecccc------------CcchhhhhchhhhHHH
Confidence 34433321 122111111 11122222221 1 2455677764 89 999999999999
Q ss_pred CHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEE-EEeCC-ceeeecCChH
Q psy2681 128 DIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELW-ALEKK-NIRKFNGDFD 179 (211)
Q Consensus 128 D~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~-~l~~g-~i~~~~g~~~ 179 (211)
|+......++.+... +.|++ +|+...+..+|+++. +|.+| +.+. .++..
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~-~~~~~ 209 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR-KGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG-GSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee-cCCCC
Confidence 999999988888765 33543 999999999999998 88999 7754 35543
No 126
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.91 E-value=8.7e-08 Score=80.47 Aligned_cols=114 Identities=12% Similarity=-0.093 Sum_probs=68.8
Q ss_pred CeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---------cC----CC
Q psy2681 8 LRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---------FN----LP 72 (211)
Q Consensus 8 ~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---------~~----~~ 72 (211)
..|.+.+.-. ++|||.+ +.+.+.+.+.. ...+.+++|+.. ++ ..+..+++... .+ ..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~g~~-----~~~~~iv~~D~f--~~-~~~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGG-----EKSIGYASIDDF--YL-THEDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGG-----GSCEEEEEGGGG--BC-CHHHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCC-----CceEEEeccccc--cC-ChHHHHHHhccccccchhhhccCcchhH
Confidence 3456664443 5999999 98888764211 223455588863 33 33445554321 01 12
Q ss_pred HHHHHHHHHhCCCC------C--ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 73 YEKSRRQLGMFGLP------S--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 73 ~~~~~~~l~~~gl~------~--~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.....+.++.+.-. . ... ..-..+||||+||+.+|++...+|+|+|+||||+++|+.
T Consensus 104 ~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 104 MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 34455566655322 1 111 133689999999999873333399999999999999985
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=3.8e-05 Score=61.31 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCChHHHHH-HHHHHHHh--cCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHH----hcCCeEEEEecChHHH
Q psy2681 96 DLSGGQKAR-VALAELTL--NNPDILILDEPTNNLDIE-------S-----IDALAEAIK----NYQGGVILVSHDERLI 156 (211)
Q Consensus 96 ~LSgG~kqR-v~iaral~--~~p~lllLDEPt~gLD~~-------~-----~~~l~~~l~----~~~~tiiivsHd~~~~ 156 (211)
.++..+... +.-+..++ .+|+++++|||++.+|+. + ...+...|. +.+.|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 355555433 23233333 589999999999999985 3 223333333 3478999999976654
Q ss_pred Hh-------------------hCCeEEEEeCC
Q psy2681 157 RE-------------------TDCELWALEKK 169 (211)
Q Consensus 157 ~~-------------------~~~~v~~l~~g 169 (211)
.. +||.+++|..+
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------------------CCTTCEEEEEEEC
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 33 78999988765
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.83 E-value=5.6e-07 Score=76.81 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=90.4
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..+.++ |.. ++||+++ ++|.++|++|+|.... +..+.+++|... +++..++.+++.
T Consensus 129 g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~l~ 205 (328)
T 3e70_C 129 PYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDAIQ 205 (328)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHHHH
Confidence 4566666 665 5999999 9999999999996431 113558888754 566677777764
Q ss_pred hhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q psy2681 67 KLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 144 (211)
Q Consensus 67 ~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 144 (211)
... +.+ .-+++..|....... .+.+| -.+++++..++.+++||.++. .|.. ..+..+-...+.
T Consensus 206 ~~~~~~~d----~vliDtaG~~~~~~~-l~~eL-------~~i~ral~~de~llvLDa~t~-~~~~--~~~~~~~~~~~i 270 (328)
T 3e70_C 206 HAKARGID----VVLIDTAGRSETNRN-LMDEM-------KKIARVTKPNLVIFVGDALAG-NAIV--EQARQFNEAVKI 270 (328)
T ss_dssp HHHHHTCS----EEEEEECCSCCTTTC-HHHHH-------HHHHHHHCCSEEEEEEEGGGT-THHH--HHHHHHHHHSCC
T ss_pred HHHhccch----hhHHhhccchhHHHH-HHHHH-------HHHHHHhcCCCCEEEEecHHH-HHHH--HHHHHHHHhcCC
Confidence 221 000 001233343322111 22333 348999999999999996554 3332 233333335578
Q ss_pred eEEEEecCh---------HHHHhhCCeEEEEeCCcee
Q psy2681 145 GVILVSHDE---------RLIRETDCELWALEKKNIR 172 (211)
Q Consensus 145 tiiivsHd~---------~~~~~~~~~v~~l~~g~i~ 172 (211)
|+|++||.- ..+......+..+-.|..+
T Consensus 271 t~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 271 DGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 999999953 3444555677888888654
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=6.5e-05 Score=57.61 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=37.0
Q ss_pred HhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CCeEEEEecChH
Q psy2681 111 TLNNPDILILDEPTN-NLDIESIDALAEAIKNY---QGGVILVSHDER 154 (211)
Q Consensus 111 l~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~---~~tiiivsHd~~ 154 (211)
.+.+|++|++|||++ ++|+..+..+.+++... +.++|++||...
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 345999999999995 99999999999888654 579999999763
No 130
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.71 E-value=2e-05 Score=67.90 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=84.6
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC---------eEEEEEe-CCCCCCCCCCCCHHHHHHhhcCCC
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR---------LRIGKFD-QHSGEHLFPDDTPCEYLMKLFNLP 72 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~---------~~ig~v~-q~~~~~l~~~~t~~e~~~~~~~~~ 72 (211)
..|..+.+++.-. ++|||++ ++|.++|++|.|..... ..++|++ |++.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~-------------------- 232 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK-------------------- 232 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------------------
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccc--------------------
Confidence 4566777775554 5999999 99999999999976531 1233333 2110
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
..++++..++..|+.++..+|+.+++|||... ...+++..+ ..|++.+
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRGG-------EAYDFINVAASGHGGSITS 283 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCST-------HHHHHHHHHHTTCCSCEEE
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchHH-------HHHHHHHHHhcCCCeEEEE
Confidence 01234456788999999999999999999962 233444433 3478999
Q ss_pred ecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
+|... +...++|+..+..+......-++......+.+.+
T Consensus 284 ~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~~~ 322 (361)
T 2gza_A 284 CHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRLLYLVV 322 (361)
T ss_dssp EECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHC
T ss_pred ECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHHHHHHc
Confidence 99976 6677789887776642111234444444443443
No 131
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.63 E-value=9.9e-06 Score=71.39 Aligned_cols=141 Identities=9% Similarity=-0.016 Sum_probs=81.2
Q ss_pred ccccCe--eeeecCCC--Ccccccc-ccCcccCCcc-eEEe-c---CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC-
Q psy2681 4 MCLKLR--IAVLQGLR--NPLSFIK-PKGELTPNKG-ELRK-S---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP- 72 (211)
Q Consensus 4 ~~~~~~--~~~i~~~~--~~sTLl~-i~G~~~p~~G-~i~~-~---~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~- 72 (211)
+..|.. +.++ |-. ++|||++ |+|... .| .+.. . .+..++|++|++. +++.+|+.+++.......
T Consensus 37 i~~Gei~~vaLv-G~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~D~~~~g~~~~~ 111 (427)
T 2qag_B 37 VSQGFCFNILCV-GETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN--VRLKLTIVSTVGFGDQINK 111 (427)
T ss_dssp CC-CCEEEEEEE-CSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC----CEEEEEEEEEECCCC-CCH
T ss_pred ecCCCeeEEEEE-CCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc--cccccchhhhhhhhhcccc
Confidence 445667 8888 554 5999999 999842 22 1111 1 1236899999864 444555554432111111
Q ss_pred -----------HHHHHHHHHhC-CCCC----ccccCCC-----------CCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 73 -----------YEKSRRQLGMF-GLPS----YAHTIPI-----------RDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 73 -----------~~~~~~~l~~~-gl~~----~~~~~~~-----------~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
...+.+++... ++.. ..+. ++ ..|+... +.|+++|..+++++++|+|+.
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~-rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD 187 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDS-RIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKAD 187 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC---CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchh
Confidence 12334455544 4431 1111 11 2455554 799999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh-c---CCeEEEEecCh
Q psy2681 126 NLDIESIDALAEAIKN-Y---QGGVILVSHDE 153 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~-~---~~tiiivsHd~ 153 (211)
.|.+.....+.+.+++ + +.+|+.+|.|-
T Consensus 188 ~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred ccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 9999888888877765 3 56888888653
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.37 E-value=5.5e-06 Score=74.26 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=88.8
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..+.++ |.+ ++|||++ |+|++++++|+|.... +..++|++|+.. +++..++.+++
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~~tV~e~l 368 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSASVIFDAI 368 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHHHHHHHHH
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHHHHHHHHH
Confidence 45567777 765 5999999 9999999999997531 124789998754 45566677766
Q ss_pred Hhhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh-cCC-CeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 66 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-NNP-DILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 66 ~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~-~~p-~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.... +.+ .-+++..|...... .|-.-.+|++.+++++. ..| +++|...|++|.|... .+..+-..
T Consensus 369 ~~a~~~~~D----vVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ak~f~~~ 437 (503)
T 2yhs_A 369 QAAKARNID----VLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--QAKLFHEA 437 (503)
T ss_dssp HHHHHTTCS----EEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--HHHHHHHH
T ss_pred HHHHhcCCC----EEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--HHHHHHhh
Confidence 4321 100 00123333321111 12223357888888764 446 4555555999865542 23333334
Q ss_pred cCCeEEEEecChH---------HHHhhCCeEEEEeCCce
Q psy2681 142 YQGGVILVSHDER---------LIRETDCELWALEKKNI 171 (211)
Q Consensus 142 ~~~tiiivsHd~~---------~~~~~~~~v~~l~~g~i 171 (211)
.+.|.+++||--. .+......|..+-.|..
T Consensus 438 ~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 438 VGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp TCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred cCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCC
Confidence 5789999999322 33344456666666643
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.36 E-value=4.7e-06 Score=70.10 Aligned_cols=100 Identities=7% Similarity=-0.116 Sum_probs=66.4
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe---cC----C-------eEEEEEeCCCCCC---CCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK---SP----R-------LRIGKFDQHSGEH---LFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~---~~----~-------~~ig~v~q~~~~~---l~~~~t~~e~~ 65 (211)
.+....++ |-. ++|||+| ++ ...|+.|+|.. .+ + ..+||++|.|... +++.+|+ +++
T Consensus 164 ~G~i~~l~-G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 164 EGFICILA-GPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTCEEEEE-CSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 44555555 775 4999999 99 99999999975 22 0 1369999998521 2246676 554
Q ss_pred H--h---------hcC-----CCHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHH
Q psy2681 66 M--K---------LFN-----LPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAE 109 (211)
Q Consensus 66 ~--~---------~~~-----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iar 109 (211)
. . +.+ .....+.++++.++|+. ..+ ++++.|||..++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYK-SYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHH-HHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 1 1 111 12345789999999986 444 478899998888899886
No 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.34 E-value=5.4e-07 Score=69.99 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecC-hHHHHhhCCeEEEEe
Q psy2681 98 SGGQKARVALAE------LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD-ERLIRETDCELWALE 167 (211)
Q Consensus 98 SgG~kqRv~iar------al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd-~~~~~~~~~~v~~l~ 167 (211)
|+||+|++.++. +++.+|+...+|+ +||+..... ++.+..+ +.++|.+||. ++.++++|++++ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 888888888888 8999999888883 899988887 7777655 3589999999 999999999987 8
Q ss_pred CCceeeecCChHHH
Q psy2681 168 KKNIRKFNGDFDDY 181 (211)
Q Consensus 168 ~g~i~~~~g~~~~~ 181 (211)
+|+++ +.|+.+.+
T Consensus 170 ~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 170 NPRFI-FCMAGDPL 182 (189)
T ss_dssp CGGGS-CC------
T ss_pred CCcEE-EeecCCch
Confidence 88886 45665543
No 135
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.29 E-value=0.00043 Score=57.92 Aligned_cols=131 Identities=9% Similarity=0.044 Sum_probs=79.8
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhC
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 83 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~ 83 (211)
+..+.++ |.. ++||++. +++.+.++.| .++.++.+++. ..+..+.+. .+.+.+
T Consensus 105 g~vi~lv-G~~GsGKTTl~~~LA~~l~~~~G-------~~V~lv~~D~~-----r~~a~eqL~-----------~~~~~~ 160 (296)
T 2px0_A 105 SKYIVLF-GSTGAGKTTTLAKLAAISMLEKH-------KKIAFITTDTY-----RIAAVEQLK-----------TYAELL 160 (296)
T ss_dssp SSEEEEE-ESTTSSHHHHHHHHHHHHHHTTC-------CCEEEEECCCS-----STTHHHHHH-----------HHHTTT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcC-------CEEEEEecCcc-----cchHHHHHH-----------HHHHhc
Confidence 3455555 554 5999999 9999988777 25677777642 223333332 223345
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-CeEEEE--ecChHHH
Q psy2681 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q-GGVILV--SHDERLI 156 (211)
Q Consensus 84 gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~-~tiiiv--sHd~~~~ 156 (211)
|++... ..+. ..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-. . .+++++ ||+...+
T Consensus 161 gl~~~~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~ 229 (296)
T 2px0_A 161 QAPLEV------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDM 229 (296)
T ss_dssp TCCCCB------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH
T ss_pred CCCeEe------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH
Confidence 553211 1232 334555554 4999999999 9999987665555444322 1 234444 9998888
Q ss_pred HhhCCeEEEEeCCcee
Q psy2681 157 RETDCELWALEKKNIR 172 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~ 172 (211)
.++++++..+..++++
T Consensus 230 ~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 230 KHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHTTTTSSSCCCEEE
T ss_pred HHHHHHHhcCCCCEEE
Confidence 8887776555556654
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.27 E-value=0.00027 Score=53.06 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe-EEEEecC
Q psy2681 110 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG-VILVSHD 152 (211)
Q Consensus 110 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t-iiivsHd 152 (211)
+++.+|++|++|||++ ++...+..+++++... +.+ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3467899999999998 6665588888887653 567 8888884
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.27 E-value=0.00054 Score=59.83 Aligned_cols=57 Identities=7% Similarity=0.158 Sum_probs=40.0
Q ss_pred cCCCeEEEeCCCCCCCHHHH------------HHHHHHHH----hcCCeEEEEecCh-------------------HHHH
Q psy2681 113 NNPDILILDEPTNNLDIESI------------DALAEAIK----NYQGGVILVSHDE-------------------RLIR 157 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~------------~~l~~~l~----~~~~tiiivsHd~-------------------~~~~ 157 (211)
.+|+++++|||++.+|.... ..+.+.|+ +++.|||+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996432 33444443 4578999999982 2346
Q ss_pred hhCCeEEEEeCC
Q psy2681 158 ETDCELWALEKK 169 (211)
Q Consensus 158 ~~~~~v~~l~~g 169 (211)
..++.++.|..+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 778888888765
No 138
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.16 E-value=3.2e-05 Score=65.37 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIR 157 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~ 157 (211)
..+++...... ..++|+||+||+..+++++.+|+++ ||| ..+.+.+++. +.+|+++||+...+.
T Consensus 128 ~~vd~~~~~~~--~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 128 ALVDAVHADEQ--MNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp EEEETTTHHHH--HHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred EEEEHHHHHHH--HhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 34455444432 2379999999999999999999988 999 5566666554 469999999644333
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.14 E-value=5.2e-07 Score=79.43 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=68.0
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEe---------CCCCCCCCCC---
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFD---------QHSGEHLFPD--- 58 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~---------q~~~~~l~~~--- 58 (211)
.+.++ |-+ ++|||++ +.|.+.|++|+|.... ...+++.| |+|...++++
T Consensus 169 ii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd 247 (418)
T 1p9r_A 169 IILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 247 (418)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred eEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence 34444 554 5999999 9999999999986421 01233433 7664211233
Q ss_pred -CCHHHHHHhh-c---------CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEE
Q psy2681 59 -DTPCEYLMKL-F---------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 120 (211)
Q Consensus 59 -~t~~e~~~~~-~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllL 120 (211)
+|+.+++... . ..+...+...+..+|+.... .+..|||||+|| |||+++.+|++..-
T Consensus 248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 248 LETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 4666655421 1 11223344467778887543 467899999999 99999999999763
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.11 E-value=8e-07 Score=80.14 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=41.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE--EecChHHHHhhCC
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL--VSHDERLIRETDC 161 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii--vsHd~~~~~~~~~ 161 (211)
..+|+||+||+.++. + | |+|||+.+...+++.+.++ +.|+++ +||+++.+...|.
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 468999998876641 1 7 9999998877666666554 458875 9999999988765
No 141
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.93 E-value=0.0017 Score=57.99 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=55.3
Q ss_pred CCCCCChHHHHHHHHHH--HHhc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 93 PIRDLSGGQKARVALAE--LTLN---------------NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iar--al~~---------------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
..+.+||||+|-..+|. ++++ .-.++++||. +-+|.+.....++++++++--+|+++=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 46789999999754443 3332 2357999999 9999999999999999999988888877 5
Q ss_pred HHhhCCeEEEE
Q psy2681 156 IRETDCELWAL 166 (211)
Q Consensus 156 ~~~~~~~v~~l 166 (211)
+..+.+.++.+
T Consensus 453 i~p~v~~~~~~ 463 (483)
T 3euj_A 453 ISPERGTTYKL 463 (483)
T ss_dssp CCCSSSEEEEC
T ss_pred hhhccCceEEE
Confidence 55566666654
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.78 E-value=0.0044 Score=54.65 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCH--------HHHHHHHHHHH----hcCCeEEEEec--------
Q psy2681 94 IRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI--------ESIDALAEAIK----NYQGGVILVSH-------- 151 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~--~~p~lllLDEPt~gLD~--------~~~~~l~~~l~----~~~~tiiivsH-------- 151 (211)
...+|.++.+ ..++.+. .+|+++++|+|+...+. .....+...|+ +++.+||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~ 370 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR 370 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 4579999886 4566665 68999999999997743 22234444444 45789999999
Q ss_pred -C--hH--------HHHhhCCeEEEEeCCce
Q psy2681 152 -D--ER--------LIRETDCELWALEKKNI 171 (211)
Q Consensus 152 -d--~~--------~~~~~~~~v~~l~~g~i 171 (211)
+ +. .++..+|.+++|..+..
T Consensus 371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3 22 46778999999976654
No 143
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.0052 Score=48.63 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=40.0
Q ss_pred cCCCeEEEeCCCCCC--CHHHHHH----HHHHHHhcCCeEEEEecChHH--------HHhhCCeEEEEeC
Q psy2681 113 NNPDILILDEPTNNL--DIESIDA----LAEAIKNYQGGVILVSHDERL--------IRETDCELWALEK 168 (211)
Q Consensus 113 ~~p~lllLDEPt~gL--D~~~~~~----l~~~l~~~~~tiiivsHd~~~--------~~~~~~~v~~l~~ 168 (211)
.+|+++++|+|++.+ |+..... +.+.+++.+.|||+++|.... +...+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5533332 333445567899999998775 4577898888864
No 144
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.68 E-value=0.00075 Score=63.63 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc--C-CeEEE-EecChHHHHhhCCe
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNY--Q-GGVIL-VSHDERLIRETDCE 162 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~--~-~tiii-vsHd~~~~~~~~~~ 162 (211)
.+..+|.|+.+|..++.+++.+++++++|||+. +||......++..+... + .+|++ +||+.+.+.++.+.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 456789999999999999999999999999996 99988766666655443 2 36666 49998888777654
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.52 E-value=3.4e-06 Score=66.70 Aligned_cols=134 Identities=12% Similarity=0.013 Sum_probs=75.9
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh--cC----CCHHHHH
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FN----LPYEKSR 77 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~--~~----~~~~~~~ 77 (211)
.+..+.+++.-. ++|||++ |+|.+.|. | ..+|+++++.. .+. .+..++.... .+ .......
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF--HLD-NRLLEPRGLLPRKGAPETFDFEGFQ 89 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG--BCC-HHHHGGGTCGGGTTSGGGBCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC--cCC-HHHHHHhcccccCCCCchhhHHHHH
Confidence 456777874443 5999999 99999876 4 24567776542 111 1111111000 01 1222223
Q ss_pred HHHHhCC----CCCccccCCCCCCChHHHHHHHHH-HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC
Q psy2681 78 RQLGMFG----LPSYAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152 (211)
Q Consensus 78 ~~l~~~g----l~~~~~~~~~~~LSgG~kqRv~ia-ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd 152 (211)
+.+..+. +.-.... ....+|+||+|+++++ ++++.++.++++|||.. ..+...-..+++++++
T Consensus 90 ~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~~ 157 (208)
T 3c8u_A 90 RLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEVP 157 (208)
T ss_dssp HHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECCC
T ss_pred HHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeCC
Confidence 3333221 1101112 2346899999999998 88888888888888841 1223334578899999
Q ss_pred hHH-HHhhCCe
Q psy2681 153 ERL-IRETDCE 162 (211)
Q Consensus 153 ~~~-~~~~~~~ 162 (211)
.+. +.+...|
T Consensus 158 ~~~~~~R~~~R 168 (208)
T 3c8u_A 158 MADLEARLVQR 168 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 876 4555444
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.37 E-value=0.00021 Score=60.26 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=53.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe---cC------C---eE-EEEEeCCCCCCCCC--CCCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK---SP------R---LR-IGKFDQHSGEHLFP--DDTPCEYL 65 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~---~~------~---~~-ig~v~q~~~~~l~~--~~t~~e~~ 65 (211)
+..+..+.++ |-. ++|||+| |.|...|..|+|.. .+ . .. +||++|.|....+. .+++ +++
T Consensus 170 ~~~G~~~~lv-G~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 170 HFQDKTTVFA-GQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGTTSEEEEE-ESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hcCCCEEEEE-CCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 3445666666 665 5999999 99999999999874 11 0 11 68999998622121 4677 665
Q ss_pred Hh-------h------cC-----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHH
Q psy2681 66 MK-------L------FN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 104 (211)
Q Consensus 66 ~~-------~------~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqR 104 (211)
.. . .+ .....+.++++.++++....+ ....++.|++||
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~~ 303 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKDR 303 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhhc
Confidence 21 1 11 122457889999999864443 345677888873
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.35 E-value=6.2e-05 Score=63.09 Aligned_cols=91 Identities=12% Similarity=-0.033 Sum_probs=54.5
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe---cC-----------CeEEEEEeCCCCC--------------C
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK---SP-----------RLRIGKFDQHSGE--------------H 54 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~---~~-----------~~~ig~v~q~~~~--------------~ 54 (211)
.+..+.++ |-. ++|||++ |+|+..|++|+|.. .+ ...+||++|.|.. .
T Consensus 168 ~geiv~l~-G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 168 KGKISTMA-GLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred cCCeEEEE-CCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 45566666 664 4999999 99999999999875 21 0137899998851 1
Q ss_pred CCCCCCHHHHHHhhc----CCCHHHHHHHHHhCCCC-CccccCCCCCCCh
Q psy2681 55 LFPDDTPCEYLMKLF----NLPYEKSRRQLGMFGLP-SYAHTIPIRDLSG 99 (211)
Q Consensus 55 l~~~~t~~e~~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSg 99 (211)
+++++++ +++.... .....++.++++.+||+ +..+ +++..||.
T Consensus 247 l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-~~~~~lse 294 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYE-NYVKMFYE 294 (301)
T ss_dssp GSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHH
T ss_pred HHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHH-HHHHHHHH
Confidence 4566666 5543211 11234678899999996 4444 36677774
No 148
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.35 E-value=0.012 Score=50.24 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH----HH---HHHHHH---HHHhcCCeEEEEecChH------
Q psy2681 103 ARVALAELTLNN--PDILILDEPTNNL----------DI----ES---IDALAE---AIKNYQGGVILVSHDER------ 154 (211)
Q Consensus 103 qRv~iaral~~~--p~lllLDEPt~gL----------D~----~~---~~~l~~---~l~~~~~tiiivsHd~~------ 154 (211)
+-+.++++++.+ |+++++|||++.+ |+ .. ...+.+ .+++.+.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456678888654 9999999999998 32 11 122222 23566889999999654
Q ss_pred ----------HHHhhCCeEEEEeCCc
Q psy2681 155 ----------LIRETDCELWALEKKN 170 (211)
Q Consensus 155 ----------~~~~~~~~v~~l~~g~ 170 (211)
.+..+|+.++.+..++
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEee
Confidence 2556788777776543
No 149
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.10 E-value=5.1e-05 Score=64.40 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=74.4
Q ss_pred eecCCC--Ccccccc-ccCcc----cCCcceEEec-----------CCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 12 VLQGLR--NPLSFIK-PKGEL----TPNKGELRKS-----------PRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~----~p~~G~i~~~-----------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
++.|-. ++|||++ ++|.+ .+.+|.+... .+..+.+++|... +++ ++.+++... +.
T Consensus 55 ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQ 130 (334)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSC
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcc
Confidence 344654 5999999 99887 6777765421 2346889988653 333 555555321 11
Q ss_pred C--------CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 71 L--------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 71 ~--------~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
. ....+...+..+++.. ..+ ++..||+|++||+.++ .+||+.+...+.++|++.
T Consensus 131 ~~i~~~~~~~~~~i~~~l~~~~li~-at~-~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 131 IDIMIGKGPSAKSIRIDIQPFTLVG-ATT-RSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp CCC---------------CCCEEEE-EES-CGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred cceeeccCcccccccccCCCeEEEE-ecC-CcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 1 1122334555666644 343 6789999999998654 778887788888777653
Q ss_pred CCeEEEEecChHHHHhhCC
Q psy2681 143 QGGVILVSHDERLIRETDC 161 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~ 161 (211)
... .-++|+.+.+..++.
T Consensus 193 ~~~-~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 193 ASL-MDVEIEDAAAEMIAK 210 (334)
T ss_dssp HHH-TTCCBCHHHHHHHHH
T ss_pred HHH-cCCCcCHHHHHHHHH
Confidence 110 013677776666554
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.42 E-value=0.053 Score=44.99 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=70.1
Q ss_pred CeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCC
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 84 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~g 84 (211)
..+.++ |-. ++||+.. ++|.+.+.+|++.. +..++. .... .+. ...+.+..|
T Consensus 99 ~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l--------~~~d~~----~~~~-~~q-----------l~~~~~~~~ 153 (295)
T 1ls1_A 99 NLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLL--------VAADTQ----RPAA-REQ-----------LRLLGEKVG 153 (295)
T ss_dssp EEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEE--------EECCSS----CHHH-HHH-----------HHHHHHHHT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEE--------ecCCcc----cHhH-HHH-----------HHHhcccCC
Confidence 345555 654 5889988 99988887776643 222221 1101 111 112234445
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHHHHHHHHHHhcC--CeEEEEe
Q psy2681 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP-TNNLDIESIDALAEAIKNYQ--GGVILVS 150 (211)
Q Consensus 85 l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEP-t~gLD~~~~~~l~~~l~~~~--~tiiivs 150 (211)
++-.... ...+..+.+|.+|+.+...+++++|+||| +.++|......+........ .+++++.
T Consensus 154 l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 154 VPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 5422111 12344556788999998899999999999 99999988888877776542 3444444
No 151
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.36 E-value=0.018 Score=51.21 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeCCC----------CCCCHHHHHHHHHHHHhc-------CCeEEEEecChHHH
Q psy2681 99 GGQKARVALAELTLNNPDILILDEPT----------NNLDIESIDALAEAIKNY-------QGGVILVSHDERLI 156 (211)
Q Consensus 99 gG~kqRv~iaral~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~ 156 (211)
++++.|..+++|....|.+|++||+. +|.|......+.+++..+ +..||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67888999999999999999999993 466766655555555432 34788899988654
No 152
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.28 E-value=0.00019 Score=55.33 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=55.4
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCC---cceEEecCC---------------eEEE----EEeCCCCCCCCCCCCHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPN---KGELRKSPR---------------LRIG----KFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~---~G~i~~~~~---------------~~ig----~v~q~~~~~l~~~~t~~e 63 (211)
.+.++ |-. ++|||++ +.|.++|+ .|.|..+.. ..+| +++|++. ++..
T Consensus 4 ~v~Iv-G~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~--~~i~----- 75 (171)
T 2f1r_A 4 ILSIV-GTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL--AFIR----- 75 (171)
T ss_dssp EEEEE-ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE--EEEE-----
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE--EEEe-----
Confidence 45566 432 4899999 99999998 788864321 1233 5555432 1100
Q ss_pred HHHhhcCCCHH---HHHHHHHh-C-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy2681 64 YLMKLFNLPYE---KSRRQLGM-F-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118 (211)
Q Consensus 64 ~~~~~~~~~~~---~~~~~l~~-~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ll 118 (211)
....+ .+.+++.. + |++.. -...|||||+||++||||++.+|++.
T Consensus 76 ------~~~~~~~a~l~~~i~~~l~g~dt~----i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 76 ------RVSEEEGNDLDWIYERYLSDYDLV----ITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ------ECCHHHHTCHHHHHHHHTTTCSEE----EEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ------cCChhhhhCHHHHHHhhCCCCCEE----EECCcCCCCCcEEEEEecccCCCccC
Confidence 00111 23444444 4 34322 23359999999999999999999873
No 153
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.07 E-value=0.04 Score=46.80 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=48.5
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHhc--CCeEEEEe--cChH
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILD-EPTNNLDIESIDALAEAIKNY--QGGVILVS--HDER 154 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLD-EPt~gLD~~~~~~l~~~l~~~--~~tiiivs--Hd~~ 154 (211)
++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+... +..+|+|. ||+.
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 56789999998876 55556778889999 999999999888777777653 56788888 8864
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.66 E-value=0.0011 Score=59.70 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=54.2
Q ss_pred HHHHhCCCCCcccc--CCCCCCChHHHHHH----------HHHHHHhcCCC-eEEEeCCCCCCCHHHHHHHHHHHH----
Q psy2681 78 RQLGMFGLPSYAHT--IPIRDLSGGQKARV----------ALAELTLNNPD-ILILDEPTNNLDIESIDALAEAIK---- 140 (211)
Q Consensus 78 ~~l~~~gl~~~~~~--~~~~~LSgG~kqRv----------~iaral~~~p~-lllLDEPt~gLD~~~~~~l~~~l~---- 140 (211)
+++..+|+.+.... +....+|+||+|+. .+++++...|. ++++||+++.++... ..+.+.+.
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar 326 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG-KKVEELIARLAQ 326 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHH
Confidence 56778887653221 11235788887752 35566777888 899999999887432 23333332
Q ss_pred ---hcCCeEEEEecChH-------HHHhhCCeEEE
Q psy2681 141 ---NYQGGVILVSHDER-------LIRETDCELWA 165 (211)
Q Consensus 141 ---~~~~tiiivsHd~~-------~~~~~~~~v~~ 165 (211)
+.|.++|++||.+. ....+..|+.+
T Consensus 327 ~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 327 KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 23569999999987 44555555543
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.43 E-value=0.019 Score=48.19 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=57.5
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCC
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 85 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl 85 (211)
.+.++ |.. ++||+++ +++.+.+.+|+|.. +..+. +.. ... +....+.+.+|+
T Consensus 106 vi~iv-G~~GsGKTTl~~~LA~~l~~~g~kV~l--------v~~D~----~r~-~a~-----------eqL~~~~~~~gl 160 (306)
T 1vma_A 106 VIMVV-GVNGTGKTTSCGKLAKMFVDEGKSVVL--------AAADT----FRA-AAI-----------EQLKIWGERVGA 160 (306)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEE--------EEECT----TCH-HHH-----------HHHHHHHHHHTC
T ss_pred EEEEE-cCCCChHHHHHHHHHHHHHhcCCEEEE--------Ecccc----ccH-HHH-----------HHHHHHHHHcCC
Confidence 34444 665 4999999 99999887776543 33232 110 011 123345556666
Q ss_pred CCccccCCCCCCChHHHHHH---HHHHHHhcCCCeEEEeCCCC
Q psy2681 86 PSYAHTIPIRDLSGGQKARV---ALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 86 ~~~~~~~~~~~LSgG~kqRv---~iaral~~~p~lllLDEPt~ 125 (211)
+. +..+|+|+.+++ ++++++..+|+++|+|||..
T Consensus 161 ~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 161 TV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp EE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 42 236789999999 89999999999999999975
No 156
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.13 E-value=0.01 Score=50.71 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHH---hc--CCCeEEEeCCC
Q psy2681 96 DLSGGQKARVALAELT---LN--NPDILILDEPT 124 (211)
Q Consensus 96 ~LSgG~kqRv~iaral---~~--~p~lllLDEPt 124 (211)
.+|+|++||..|++++ .. ++.++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 66 89999999997
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.96 E-value=0.086 Score=44.79 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHHhc-CCeEEEEec
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIKNY-QGGVILVSH 151 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~-~~tiiivsH 151 (211)
..||.++.+|+..|...+.+++++|.|+|... +....... .+.++. +..+|+|-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 47999999999999999999999999999754 33333333 333344 456777654
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.64 E-value=0.065 Score=40.85 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 103 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 103 qRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+.+|++++.+|+++++| ||++|..+...+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999988864
No 159
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.25 E-value=0.013 Score=44.23 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=41.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCe------EEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRL------RIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~------~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++-.. ++|||++ ++|.+ |++|+|...... ...+++|++. ++ .+++.+++.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~--l~-~ltv~e~l~ 96 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD--LY-RLADPEELE 96 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE--CT-TCSCTTHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc--cc-cCCcHHHHH
Confidence 345677888884453 5999999 99999 999999754311 0126788753 56 777766653
No 160
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.83 E-value=0.0059 Score=51.02 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=60.4
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCccc--CCcceEEe---cCC-------eEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELT--PNKGELRK---SPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p~~G~i~~---~~~-------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
..+..+.++++.. ++|||++ ++|++. |++|+|.. +.. ..+|++ |... +++.+++.+++....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~--~~~~~~~~~~~~~~~- 153 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKG--FPESYDMHRLVKFVS- 153 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTT--SGGGBCHHHHHHHHH-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCC--CCCCccHHHHHHHHH-
Confidence 3456788886665 5999999 999988 99999876 321 124455 4432 344556555543211
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
...+-..... .+....+.+ +|+..+.+.+.+|+++|+|.|....+
T Consensus 154 ----------~l~~~~~~i~-~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 154 ----------DLKSGVPNVT-APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp ----------HHTTTCSCEE-ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ----------HHhCCCCcee-ccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 1111111011 133333333 33333334556899999999998877
No 161
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=91.73 E-value=0.001 Score=59.75 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=48.4
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-HhcCCeEEEEecChHHH--HhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 109 ELTLNNPDILILDEPTNNLDIESIDALAEAI-KNYQGGVILVSHDERLI--RETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 109 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~tiiivsHd~~~~--~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||..+ ++||+ ||++.+||. ...+..-| +.++.++.++||+++.+ .++++++..+..++++...++.++..
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 789999 99999 999999994 33332222 33455789999999887 66666666555555544345665544
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.40 E-value=0.24 Score=38.74 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHHHHHHHHHh--cCCCeEEEeCCCC--CCCHHHHHHHHHHHHhc--CCeEEEEecCh-HHHHhhCCeEEEEeCCc
Q psy2681 102 KARVALAELTL--NNPDILILDEPTN--NLDIESIDALAEAIKNY--QGGVILVSHDE-RLIRETDCELWALEKKN 170 (211)
Q Consensus 102 kqRv~iaral~--~~p~lllLDEPt~--gLD~~~~~~l~~~l~~~--~~tiiivsHd~-~~~~~~~~~v~~l~~g~ 170 (211)
+..+..++..+ .+.+++||||.+. .++......+.++|.+. ...||+++.+. ..+.+.+|-|-.|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44555666667 6789999999976 34445566788888765 35788888774 56667889998886543
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.30 E-value=0.11 Score=45.49 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCCeEEEeCCCCCCCH-HHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 114 NPDILILDEPTNNLDI-ESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~-~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
+|++|++||+..-.+. ..+..++..+... +..||++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999877654 6677787777543 56899999973
No 164
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.57 E-value=0.11 Score=43.83 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 95 RDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
..+|+|++|++..+++++. .|++++ ||++|..+...+++.|.+.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999987 688886 9999999999999998763
No 165
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.27 E-value=0.36 Score=40.78 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C-CeEEEEec
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q-GGVILVSH 151 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~-~tiiivsH 151 (211)
.+.++.++++..+++..+.+|+++|+.-..+..|.... ....+++.. + .+|+++|.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-DAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence 34678899999999999999998888854444554432 333444433 3 47777776
No 166
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.99 E-value=0.51 Score=39.48 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=36.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHh------cCCeEEEEecChHHHHhhC
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKN------YQGGVILVSHDERLIRETD 160 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~ 160 (211)
.+|.++++||+... |......+..++.+ .+.++|++||+.+....+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 56889999999876 88888888888753 2458999999987655443
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.13 E-value=1.3 Score=35.78 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH----------HHHHHHHHHHHhcC-------CeEEEEecCh
Q psy2681 98 SGGQKARVALAELTLNNPDILILDEPTNNLDI----------ESIDALAEAIKNYQ-------GGVILVSHDE 153 (211)
Q Consensus 98 SgG~kqRv~iaral~~~p~lllLDEPt~gLD~----------~~~~~l~~~l~~~~-------~tiiivsHd~ 153 (211)
+++++.+..+..+...+|.+|++||+.+-++. .....++..+.... ..||.+|++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 56788888899999999999999999876543 22334555555431 2577778864
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.05 E-value=0.29 Score=37.18 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 105 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
...|++++.+|+++++| ||++|..+...+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999998888764
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.91 E-value=0.67 Score=38.47 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhcCCe--EEEEec
Q psy2681 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGG--VILVSH 151 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~~~t--iiivsH 151 (211)
||.++++|+..|...+.++++++.|+|... +.... .+..+.++.+.. +|+|-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999999744 43333 233333444556 888876
No 170
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.67 E-value=0.1 Score=40.14 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CCeEEEEecChH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDER 154 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~tiiivsHd~~ 154 (211)
..++.+.+|... -.|.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.+... +.++|+.+|.+.
T Consensus 47 ~~~i~~~~g~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~ 116 (206)
T 1jjv_A 47 LSKIVEHFGAQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLI 116 (206)
T ss_dssp HHHHHHHHCTTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTT
T ss_pred HHHHHHHhCHHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence 445556666421 13678899999999888887654333 3456677777777777654 457888899876
Q ss_pred HH--HhhCCeEEEEeC
Q psy2681 155 LI--RETDCELWALEK 168 (211)
Q Consensus 155 ~~--~~~~~~v~~l~~ 168 (211)
.. ...|+.++++.-
T Consensus 117 e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 117 ENKLTALCDRILVVDV 132 (206)
T ss_dssp TTTCGGGCSEEEEEEC
T ss_pred hcCcHhhCCEEEEEEC
Confidence 65 567888888864
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=85.63 E-value=0.34 Score=41.33 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHhCCCCCcc----ccCCCCCCChHHHHHHHHH----HHH-hcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 77 RRQLGMFGLPSYA----HTIPIRDLSGGQKARVALA----ELT-LNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 77 ~~~l~~~gl~~~~----~~~~~~~LSgG~kqRv~ia----ral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.++++.+++.+.. .+ ++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...+++.|.+
T Consensus 282 ~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 4567777765432 33 5677898988888877 555 444454 79999999999999888865
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.00 E-value=0.2 Score=45.62 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+|+|++|++..++....++.+|++||... |++..+..|++.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999988 899999999999974
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.59 E-value=0.0035 Score=48.86 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 107 LAE-LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 107 iar-al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.++ +++.+|++++|||||+++|..+...+.+.|...... +.++|.. ..+|.++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivn 171 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIIN 171 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEEC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEEC
Confidence 455 678888888999999999998888887777653211 2334511 456776654
No 174
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.24 E-value=0.58 Score=38.88 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=29.6
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHhc---CCeEEEEecChHHHHh
Q psy2681 114 NPDILILDEPTNNLD---IESIDALAEAIKNY---QGGVILVSHDERLIRE 158 (211)
Q Consensus 114 ~p~lllLDEPt~gLD---~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 158 (211)
.|.++++||+.+..+ ......+.+.+... +.++|++||+......
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 488999999987652 33444555555322 4589999998865433
No 175
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.18 E-value=0.014 Score=47.86 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC------------CCCHHHHHHHHHHHHh
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTN------------NLDIESIDALAEAIKN 141 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~------------gLD~~~~~~l~~~l~~ 141 (211)
.+.+|||||+||+.|++|+.++|++| |||+. --|...+..+++.+.+
T Consensus 134 ~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 134 LLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 56789999999999999999999985 99864 3467777777776653
No 176
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.51 E-value=2.5 Score=35.01 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHHHHh---cCCCeEEEeCCCCCCCH--------HH----HHHHHH----HHHhcCCeEEEEecChH
Q psy2681 103 ARVALAELTL---NNPDILILDEPTNNLDI--------ES----IDALAE----AIKNYQGGVILVSHDER 154 (211)
Q Consensus 103 qRv~iaral~---~~p~lllLDEPt~gLD~--------~~----~~~l~~----~l~~~~~tiiivsHd~~ 154 (211)
+.+..++.++ .+|+++++|+.++-... .. ...+.. +.++++.+||+++|-..
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 5667777777 67999999999976532 11 122222 22345789999988654
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.25 E-value=6.9 Score=33.08 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHHh--cCCCeEEEeCCCCCCCH-H-----------HH-HHH-------HHHHHhcCCeEEEEecCh
Q psy2681 103 ARVALAELTL--NNPDILILDEPTNNLDI-E-----------SI-DAL-------AEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 103 qRv~iaral~--~~p~lllLDEPt~gLD~-~-----------~~-~~l-------~~~l~~~~~tiiivsHd~ 153 (211)
+-+.+++.++ .+++++++|.+++-... . .+ +.+ ..++++.+.+||+++|-.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 3455666664 68999999999987631 1 11 112 222345678999998854
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=74.53 E-value=4 Score=30.81 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChH
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDER 154 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~ 154 (211)
+|.++++||.-. +|......+...+.+. +..+|++|++..
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 578999999765 7888888888888765 347888887754
No 179
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.51 E-value=0.008 Score=49.18 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCe--EEEeCCCCCCCHH
Q psy2681 96 DLSGGQKARVALAELTLNNPDI--LILDEPTNNLDIE 130 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~~~p~l--llLDEPt~gLD~~ 130 (211)
.+|+| ||+++++++..+|++ +|+||+|+.||..
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 206 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSL 206 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHH
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHH
Confidence 57888 899999999999999 9999999999876
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.26 E-value=5.3 Score=32.68 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChH
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 154 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~ 154 (211)
++.++++|| ...|++.....+.+.+.+.. ..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 566999999 78899999999999998763 35667776654
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=67.76 E-value=0.014 Score=50.12 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCe--EEEeCCCCCCCHH
Q psy2681 96 DLSGGQKARVALAELTLNNPDI--LILDEPTNNLDIE 130 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~~~p~l--llLDEPt~gLD~~ 130 (211)
.+|+| ||+++++++..+|++ +|+||+|+.||..
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 46888 899999999999999 9999999999864
No 182
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.56 E-value=6.7 Score=32.75 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHHHh----cCCCeEEEeCCCCCCCHH--------H----HHHHH----HHHHhcCCeEEEEecChH
Q psy2681 103 ARVALAELTL----NNPDILILDEPTNNLDIE--------S----IDALA----EAIKNYQGGVILVSHDER 154 (211)
Q Consensus 103 qRv~iaral~----~~p~lllLDEPt~gLD~~--------~----~~~l~----~~l~~~~~tiiivsHd~~ 154 (211)
+.+..++.++ .+++++++|..++-.... . ...+. .+.++++.+||+++|...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 4454555555 679999999999876432 1 12222 223345789999999654
No 183
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=65.32 E-value=13 Score=29.12 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=37.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC----------hHHHHhhCCeEEEEe
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD----------ERLIRETDCELWALE 167 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd----------~~~~~~~~~~v~~l~ 167 (211)
+++++++||--. |+....+.+ ..+.+.+.+||++-|+ ...+..++|+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 776644444 4444558899999993 345556889988754
No 184
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=63.84 E-value=4.5 Score=36.77 Aligned_cols=57 Identities=9% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCCCChH-HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C-CeEEEEec
Q psy2681 94 IRDLSGG-QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q-GGVILVSH 151 (211)
Q Consensus 94 ~~~LSgG-~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~-~tiiivsH 151 (211)
.+.|+.+ .++...+++.++.+|.-++++.+++++|..+.. ..++++.. + .||+++||
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~-~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE-ALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH-HHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH-HHHHHHHHhhcCCceEEEecc
Confidence 5666664 457788999999999999999999999987543 34444433 3 58999998
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=63.24 E-value=8.6 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=27.2
Q ss_pred hcCCCeEEEeCCCCC-CCHHHHHHHHHHHHhc---CCeEEEEec
Q psy2681 112 LNNPDILILDEPTNN-LDIESIDALAEAIKNY---QGGVILVSH 151 (211)
Q Consensus 112 ~~~p~lllLDEPt~g-LD~~~~~~l~~~l~~~---~~tiiivsH 151 (211)
..++++|++||+..- -+...+..+...+... +..+|++|+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 356999999998652 2346777777776543 455666665
No 186
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=62.19 E-value=15 Score=29.28 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=41.3
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC----------hHHHHhhCCeEEEEe
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD----------ERLIRETDCELWALE 167 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd----------~~~~~~~~~~v~~l~ 167 (211)
.+.+++++||---..| ..++.+.+.+.+..||+..+| ...+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7899999999887755 677778888888899999999 344556788887654
No 187
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=61.14 E-value=1.3 Score=39.31 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=24.7
Q ss_pred CeeeeecCCC--Ccccccc-ccCcccCCcceEEe
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK 38 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~ 38 (211)
..+.++ |-+ ++|||++ |+|+++|++|+|..
T Consensus 30 e~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 30 LVTTLS-GGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ceEEEE-CCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 556666 554 5999999 99999999999864
No 188
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=60.74 E-value=0.73 Score=36.67 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=19.2
Q ss_pred CCC--Ccccccc-ccCcccCCcceEEec
Q psy2681 15 GLR--NPLSFIK-PKGELTPNKGELRKS 39 (211)
Q Consensus 15 ~~~--~~sTLl~-i~G~~~p~~G~i~~~ 39 (211)
|-. ++|||++ |+|.+.|++|.|..+
T Consensus 34 GpnGsGKSTll~~i~g~~~~~~G~i~~~ 61 (227)
T 1qhl_A 34 GGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (227)
T ss_dssp SCCSHHHHHHHHHHHHHHSCCTTTC---
T ss_pred CCCCCCHHHHHHHHhcccccCCCeEEEC
Confidence 554 4899999 999999999988643
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=56.02 E-value=21 Score=32.62 Aligned_cols=46 Identities=4% Similarity=-0.008 Sum_probs=34.9
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHH
Q psy2681 109 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156 (211)
Q Consensus 109 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~ 156 (211)
..-..+..++++| |++|+++.+.. ++..+.+.+..+|++.|.++..
T Consensus 94 ~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 94 ALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEEEEECGGGC
T ss_pred HHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEEEecCCchh
Confidence 3346788899999 99999988774 4455556677888899988753
No 190
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=54.04 E-value=11 Score=31.67 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=34.7
Q ss_pred cCCCeEEEeCCCCCCC---HHHHHHHHHHH---HhcCCeEEEEecChHHHH
Q psy2681 113 NNPDILILDEPTNNLD---IESIDALAEAI---KNYQGGVILVSHDERLIR 157 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD---~~~~~~l~~~l---~~~~~tiiivsHd~~~~~ 157 (211)
..|.++++||--.-++ +.....+.+++ ++++..++++||++..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 4689999999988885 55555565555 456789999999987664
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.42 E-value=40 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHHHHHHh--cCCCeEEEeCCCCCC
Q psy2681 103 ARVALAELTL--NNPDILILDEPTNNL 127 (211)
Q Consensus 103 qRv~iaral~--~~p~lllLDEPt~gL 127 (211)
+-+.+++.++ .+++++++|..++-.
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 4456666665 579999999998754
No 192
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=53.37 E-value=34 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=36.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh----------HHHHhhCCeEEEEe
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE----------RLIRETDCELWALE 167 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~----------~~~~~~~~~v~~l~ 167 (211)
.+.+++++||-- .+|+.....+. .+...+..||+..++. ..+..++|.|.-|.
T Consensus 80 ~~~dvViIDEaq-fl~~~~v~~l~-~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQ-FFDDEIVEIVN-KIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGG-GSCTHHHHHHH-HHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCC-CCCHHHHHHHH-HHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 357999999954 37766644443 3344477999998854 55667888886654
No 193
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=51.23 E-value=1.1e+02 Score=25.66 Aligned_cols=66 Identities=6% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHHHHHHHh--cCCCeEEEeCCCCCCC-H---------------HHHHHHHH----HHHhcCCeEEEEecCh-------
Q psy2681 103 ARVALAELTL--NNPDILILDEPTNNLD-I---------------ESIDALAE----AIKNYQGGVILVSHDE------- 153 (211)
Q Consensus 103 qRv~iaral~--~~p~lllLDEPt~gLD-~---------------~~~~~l~~----~l~~~~~tiiivsHd~------- 153 (211)
+-+.+++.++ .+|+++++|.-++-.. . .....++. +.++.+.+||++.|-.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 4455666654 5799999998766553 1 01112222 2334467999998872
Q ss_pred ---------HHHHhhCCeEEEEeC
Q psy2681 154 ---------RLIRETDCELWALEK 168 (211)
Q Consensus 154 ---------~~~~~~~~~v~~l~~ 168 (211)
..+..+++.++.+..
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEe
Confidence 235567777777764
No 194
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.15 E-value=11 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=26.1
Q ss_pred hcCCCeEEEeCCCCCC-CHHHHHHHHHHHHhc---CCe-EEEEecC
Q psy2681 112 LNNPDILILDEPTNNL-DIESIDALAEAIKNY---QGG-VILVSHD 152 (211)
Q Consensus 112 ~~~p~lllLDEPt~gL-D~~~~~~l~~~l~~~---~~t-iiivsHd 152 (211)
+.+|.++++||...-- +......+.+.+... +.. +|++|+.
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3679999999965432 222366677776543 443 7777773
No 195
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=50.89 E-value=22 Score=26.22 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=30.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecCh
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDE 153 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~ 153 (211)
.++.++++||. ..++......+...+.... ..+|++|...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 57889999995 5678888888888887753 3566677654
No 196
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.45 E-value=22 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=26.6
Q ss_pred HHHHHhcCC-CeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 107 LAELTLNNP-DILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 107 iaral~~~p-~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+..++...| .++++||. ..|++..+..+.+.+.+.
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 344554444 79999998 678999999999999753
No 197
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=49.71 E-value=21 Score=29.90 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHH
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 157 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 157 (211)
.++++++|-|..|++....+. ++ -++.++++|.+.....
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~----l~-~~g~ivyvsc~p~t~a 333 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKM----VQ-AYPRILYISCNPETLC 333 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHH----HT-TSSEEEEEESCHHHHH
T ss_pred CCCEEEECcCccccHHHHHHH----Hh-CCCEEEEEECCHHHHH
Confidence 579999999999998765444 33 4678999999876544
No 198
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=48.74 E-value=34 Score=29.42 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhcCCeEEEEec
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGGVILVSH 151 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~~~tiiivsH 151 (211)
..||..+.+|+.-|...+.+.++++.|+|.. ++.... .+..+.++.+..+|+|-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5699999999998888888889999998754 443333 334444455666777654
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=48.69 E-value=36 Score=29.23 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCH------HH----HHHHHHHH----HhcCCeEEEEecChH----
Q psy2681 95 RDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI------ES----IDALAEAI----KNYQGGVILVSHDER---- 154 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~--~~p~lllLDEPt~gLD~------~~----~~~l~~~l----~~~~~tiiivsHd~~---- 154 (211)
..+|..+- .+.++.+. .+|+++++|..+.-... .+ ...+...| ++++.+||+++|--.
T Consensus 291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~ 368 (444)
T 2q6t_A 291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444)
T ss_dssp TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 45676654 34455554 58999999998765432 11 12333333 455789999998321
Q ss_pred ---------------HHHhhCCeEEEEe
Q psy2681 155 ---------------LIRETDCELWALE 167 (211)
Q Consensus 155 ---------------~~~~~~~~v~~l~ 167 (211)
.++..+|.++.|.
T Consensus 369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 369 RPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp SSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 2456678777774
No 200
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=47.03 E-value=21 Score=25.43 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEEEec
Q psy2681 109 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-GGVILVSH 151 (211)
Q Consensus 109 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~tiiivsH 151 (211)
..|..+.+++++..|.+.+.-.....|.+++.... .|++++.|
T Consensus 71 ~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~ 114 (140)
T 1jql_B 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRG 114 (140)
T ss_dssp CCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEEC
T ss_pred CCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEe
Confidence 34577889999999988777677777888887653 56666665
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=46.38 E-value=12 Score=28.03 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=24.5
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHH-HHHHh---cCCeEEE-EecChHHHHhh
Q psy2681 112 LNNPDILILDEPTN-NLDIESIDALA-EAIKN---YQGGVIL-VSHDERLIRET 159 (211)
Q Consensus 112 ~~~p~lllLDEPt~-gLD~~~~~~l~-~~l~~---~~~tiii-vsHd~~~~~~~ 159 (211)
+.++++|++||+-. .++...+..++ .++.. .+..+|+ +.+++..+...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 35678999999933 23333333233 34432 2344444 45566666543
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=45.96 E-value=32 Score=29.86 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCeEEEeCCC-CC--CCHHHHHHHHHHHHhc
Q psy2681 105 VALAELTLNNPDILILDEPT-NN--LDIESIDALAEAIKNY 142 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt-~g--LD~~~~~~l~~~l~~~ 142 (211)
-+++.+...+++++|+|+|- .+ .|+....++..++...
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 35666666799999999997 45 7887777777665543
No 203
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=45.83 E-value=27 Score=27.65 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=25.2
Q ss_pred HHHHhcCCCeEEEeCCCCC-CCHH----HHHHHHHHHHhcCCeEEEEec
Q psy2681 108 AELTLNNPDILILDEPTNN-LDIE----SIDALAEAIKNYQGGVILVSH 151 (211)
Q Consensus 108 aral~~~p~lllLDEPt~g-LD~~----~~~~l~~~l~~~~~tiiivsH 151 (211)
..++..+|+++|+|||-.- .+.. ....+.. +...+..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~-~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQE-LLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHH-HHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHH-HHcCCCCEEEEcc
Confidence 3334568999999997642 3321 1222222 3333557888888
No 204
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=44.82 E-value=20 Score=28.33 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCeEEEeCCCCC----------CCHHHHHHHHHHHHhc-------CCeEEEEecChHH
Q psy2681 105 VALAELTLNNPDILILDEPTNN----------LDIESIDALAEAIKNY-------QGGVILVSHDERL 155 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~ 155 (211)
-.+..+....|.++++||--.- -+......+..++... +..||.+|+..+.
T Consensus 101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 3455566678899999997432 2556667777777543 2257777776533
No 205
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=44.80 E-value=30 Score=26.54 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=30.5
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-----CCeEEEEec
Q psy2681 112 LNNPDILILDEPTNNLDIESIDALAEAIKNY-----QGGVILVSH 151 (211)
Q Consensus 112 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-----~~tiiivsH 151 (211)
..+|+++|+..+.+.++......+..++..+ ..++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3578999999999898887777766665433 248888898
No 206
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=44.36 E-value=9.5 Score=32.59 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=34.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
.|-++++||-.+-+.......+....++++..++++++++..+..
T Consensus 279 ~~~~~~lDE~~~l~~~~~l~~~~~~~R~~g~~~~~~~Qs~~ql~~ 323 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 323 (437)
T ss_dssp CCEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred ccEEEEEEcccccccchhHHHHHHHHhccCCEEEEEecCHHHHHH
Confidence 456899999888654345555666667778899999999987763
No 207
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=43.47 E-value=29 Score=28.35 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=31.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChH
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 154 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~ 154 (211)
.++.++++||. -.|+......+.+.+.+.. ..+|++|++..
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 35789999995 4578888888988887753 36777787654
No 208
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=43.19 E-value=29 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=33.1
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-Ce-EEEEecC
Q psy2681 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-GG-VILVSHD 152 (211)
Q Consensus 108 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~t-iiivsHd 152 (211)
...+..+.+++++||+...+.......+.+.+.+.. .+ +|+++.+
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 345678899999999987777778888999998753 34 4444444
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=43.10 E-value=12 Score=30.76 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=24.5
Q ss_pred hcCCCeEEEeCCC-CCCCHHHHHHHHH-HHHh---cCCeEEEEec-ChHHHHh
Q psy2681 112 LNNPDILILDEPT-NNLDIESIDALAE-AIKN---YQGGVILVSH-DERLIRE 158 (211)
Q Consensus 112 ~~~p~lllLDEPt-~gLD~~~~~~l~~-~l~~---~~~tiiivsH-d~~~~~~ 158 (211)
+.++++|++||.- ..++...+..++. ++.. .+..+|++|+ .+..+..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 2344444443433 5543 2455666665 4555544
No 210
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=42.08 E-value=82 Score=25.38 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=64.7
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
+....+-+.+.++-..++ .+ ..- .+|.-|-+..++.++|- .+.|+......+.+.-+++|..+++=.||.
T Consensus 94 ~~L~~vr~~v~lPvLrKD-Fi--id~-----yQI~eAr~~GADaILLI--~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~ 163 (258)
T 4a29_A 94 ETLRKIASSVSIPILMSD-FI--VKE-----SQIDDAYNLGADTVLLI--VKILTERELESLLEYARSYGMEPLILINDE 163 (258)
T ss_dssp HHHHHHHTTCSSCEEEES-CC--CSH-----HHHHHHHHHTCSEEEEE--GGGSCHHHHHHHHHHHHHTTCCCEEEESSH
T ss_pred HHHHHHHHhcCCCEeecc-cc--ccH-----HHHHHHHHcCCCeeehH--HhhcCHHHHHHHHHHHHHHhHHHHHhcchH
Confidence 344444455666543332 22 222 24666667788888874 577999988999999999999999999999
Q ss_pred HHHHh---hCCeEEEEeCCceeeecCC
Q psy2681 154 RLIRE---TDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 154 ~~~~~---~~~~v~~l~~g~i~~~~g~ 177 (211)
+++.+ ...+++-++|..+..+.-+
T Consensus 164 ~El~rAl~~~a~iIGINNRnL~tf~vd 190 (258)
T 4a29_A 164 NDLDIALRIGARFIGIMSRDFETGEIN 190 (258)
T ss_dssp HHHHHHHHTTCSEEEECSBCTTTCCBC
T ss_pred HHHHHHhcCCCcEEEEeCCCccccccC
Confidence 88865 5577888887765444333
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=40.73 E-value=4.4 Score=33.88 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSG 52 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~ 52 (211)
..+..+.++ |-. ++|||++ ++|.+.|++|+|.... +.++++++|++.
T Consensus 53 ~~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 53 GRAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp CCSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 446677777 554 5999999 9999999999986321 234677888764
No 212
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=39.69 E-value=1.4e+02 Score=24.03 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh---CCeEEEEeCCce
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET---DCELWALEKKNI 171 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~---~~~v~~l~~g~i 171 (211)
++..|.....+.++|+= +.|+......+.+..++++..+++-.|+.+++.+. ..+++-+++-.+
T Consensus 134 qi~ea~~~GAD~VlLi~--a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l 200 (272)
T 3tsm_A 134 QVYEARSWGADCILIIM--ASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNL 200 (272)
T ss_dssp HHHHHHHTTCSEEEEET--TTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCT
T ss_pred HHHHHHHcCCCEEEEcc--cccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCC
Confidence 47778899999999974 47888888889999999999999999999988653 345666665443
No 213
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=39.24 E-value=58 Score=25.37 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC----------hHHHHhhCCeEEEEe
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD----------ERLIRETDCELWALE 167 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd----------~~~~~~~~~~v~~l~ 167 (211)
+.+++++||--- +|++... +.+.+...+..||+.-+| ...+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~~V~-~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVE-VVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHH-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHHH-HHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999865 7766553 344444457899999983 455667889887764
No 214
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=38.96 E-value=0.23 Score=40.20 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCC
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEP 123 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEP 123 (211)
+.+|||||+||+.+++|+..+|++ +|++
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 457999999999999999999987 5654
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=36.68 E-value=57 Score=26.12 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCeEEEeCCCC-------------CCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 104 RVALAELTLNNPDILILDEPTN-------------NLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 104 Rv~iaral~~~p~lllLDEPt~-------------gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+-.+..|....|.++++||--+ +........++..+... +..||.+|+..+.+
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3345556667899999999642 22233445566666543 23688888877544
No 216
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=36.31 E-value=61 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHH-HHHHHHHHHhcC-------CCeEEEeCCC
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQK-ARVALAELTLNN-------PDILILDEPT 124 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~k-qRv~iaral~~~-------p~lllLDEPt 124 (211)
+.+...+..+|+.+|+........+..|+.-.+ +|+.++..++.. -+++..||=.
T Consensus 97 ~vs~~tV~r~L~~~g~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~ 159 (345)
T 3hot_A 97 EVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKW 159 (345)
T ss_dssp TSCHHHHHHHHHHTTCEEEECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCCeeeccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhccccee
Confidence 567778889999999964333334557887654 588999888753 3799999954
No 217
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=35.93 E-value=83 Score=26.94 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CCeEEEEecChHHHHh
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDERLIRE 158 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~ 158 (211)
..+++++|-|.+|++......+. .+ ...++++|++...+.+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~l~----~l~p~givyvsc~p~tlar 394 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKRLN----REKPGVIVYVSCNPETFAR 394 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHHHH----HHCCSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCccchHHHHHHHHH----hcCCCcEEEEECChHHHHh
Confidence 68999999999999875544443 33 4689999999876553
No 218
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=35.58 E-value=3.8 Score=32.63 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=27.6
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ll 118 (211)
++++-+.+|. ....+ ..+.||||..|+...+++|+..|+-+
T Consensus 55 i~~le~~lg~-~L~~R-~~~~lsg~~~~lt~~g~~l~~~~~~~ 95 (265)
T 1b9m_A 55 INEMNQLSEH-ILVER-ATGGKGGGGAVLTRYGQRLIQLYDLL 95 (265)
T ss_dssp HHHHHHHHTS-CCEEE-CCCC-----EEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CeEEe-cCCCCCCCceEECHHHHHHHHHHHHH
Confidence 4566677888 45554 67899999999999999999888743
No 219
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=34.02 E-value=0.23 Score=39.51 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
...|||||+||+.+++|+..+|++ +|++.-
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred HHHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 357899999999999999999987 677653
No 220
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=33.94 E-value=95 Score=24.33 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC
Q psy2681 95 RDLSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd 152 (211)
+..++.+..|+.+.+..+. .|+++=++ =+...+......+.+..++.+..||++.||
T Consensus 76 G~~~~~~~~~~~ll~~~~~~~~~d~iDvE-l~~~~~~~~~~~l~~~~~~~~~kvI~S~Hd 134 (238)
T 1sfl_A 76 GYGQFTNDSYLNLISDLANINGIDMIDIE-WQADIDIEKHQRIITHLQQYNKEVIISHHN 134 (238)
T ss_dssp SCBCCCHHHHHHHHHHGGGCTTCCEEEEE-CCTTSCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEE-ccCCCChHHHHHHHHHHHhcCCEEEEEecC
Confidence 4566677888888888885 47765544 333235666667777776667789999997
No 221
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=33.56 E-value=70 Score=24.42 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHH-HHHHHHHhcC-C-eEEE-EecChHHHHhhC
Q psy2681 97 LSGGQKARVALAELTLNNPDILILDEPTN-NLDIESID-ALAEAIKNYQ-G-GVIL-VSHDERLIRETD 160 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p~lllLDEPt~-gLD~~~~~-~l~~~l~~~~-~-tiii-vsHd~~~~~~~~ 160 (211)
.+.|...+.. ...+.+.+++++||... ++|..... .+..++.... . ++++ +|.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 4556665553 34688999999999987 68777664 3444444332 2 3333 355555444443
No 222
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=33.55 E-value=12 Score=30.52 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHhc----CC--eEEEEecChHHHHhhCCeE
Q psy2681 97 LSGGQKARVALAELTL--NNPDILILDEPTNNLDIES-IDALAEAIKNY----QG--GVILVSHDERLIRETDCEL 163 (211)
Q Consensus 97 LSgG~kqRv~iaral~--~~p~lllLDEPt~gLD~~~-~~~l~~~l~~~----~~--tiiivsHd~~~~~~~~~~v 163 (211)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.+.++ +. .+.+++|+-.-+..+.+.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 5566666 78999998 8999876 55555555432 32 5666777765555444443
No 223
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=33.16 E-value=99 Score=23.99 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHHh---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC----CeEEEEecChHHH
Q psy2681 103 ARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNYQ----GGVILVSHDERLI 156 (211)
Q Consensus 103 qRv~iaral~---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~tiiivsHd~~~~ 156 (211)
+|+++..||. .+-++++.|+-. +|....+.+.++|+.++ ..+++|+.|..+.
T Consensus 106 rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~~~ 164 (210)
T 3v2d_F 106 RKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVR 164 (210)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChhHH
Confidence 4577777775 456799999864 55556677888888775 3667777664433
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=31.77 E-value=87 Score=21.84 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=26.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---CeEEEEec
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSH 151 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---~tiiivsH 151 (211)
+..++++||.- .|++..+..+.+.+.+.. ..+|.+|.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 46899999965 678888888988887642 34444443
No 225
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=30.56 E-value=64 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecCh
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDE 153 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~ 153 (211)
.++.++++||. ..++......+...+.+.. ..+|++|.+.
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 56899999996 4577888888988888753 3566666654
No 226
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.08 E-value=39 Score=27.36 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHh---cCCCeEEEeCCCCCCC--------HHHH----HHH----HHHHHhcCCeEEEEecChH-----------
Q psy2681 105 VALAELTL---NNPDILILDEPTNNLD--------IESI----DAL----AEAIKNYQGGVILVSHDER----------- 154 (211)
Q Consensus 105 v~iaral~---~~p~lllLDEPt~gLD--------~~~~----~~l----~~~l~~~~~tiiivsHd~~----------- 154 (211)
+..++.++ .+++++++|.-++-.. ...+ ..+ ..+.++++.+||+++|-..
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~ 271 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQ 271 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcC
Confidence 44445555 4699999999876431 1111 222 2233455778888877321
Q ss_pred -----HHHhhCCeEEEEeC
Q psy2681 155 -----LIRETDCELWALEK 168 (211)
Q Consensus 155 -----~~~~~~~~v~~l~~ 168 (211)
.+...++.++.+..
T Consensus 272 ~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 272 AIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp ESSHHHHHHHCSEEEEEEE
T ss_pred CCCcHHHHhcCcEEEEEEe
Confidence 24556666776653
No 227
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=30.02 E-value=66 Score=22.52 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEec
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSH 151 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsH 151 (211)
+..+|++||.- .|++..+..+.+.+.... ..+|.+|.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 67899999984 789999999999986542 34555554
No 228
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=29.51 E-value=86 Score=26.99 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH-HHHHHHhcCCe--EEEEec
Q psy2681 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA-LAEAIKNYQGG--VILVSH 151 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~-l~~~l~~~~~t--iiivsH 151 (211)
|+..+.+|+.-|...+.+.++++.|+|. +++..... +..+.++.+.. +|+|-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888888888888888888899888874 55554433 33344444556 777654
No 229
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=28.89 E-value=96 Score=25.53 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEEeCC
Q psy2681 103 ARVALAELTLNNPDILILDEP 123 (211)
Q Consensus 103 qRv~iaral~~~p~lllLDEP 123 (211)
.+..+..+-..+|.+|++||.
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHHHhcCCeEEEEeCc
Confidence 344555666678999999997
No 230
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=28.88 E-value=2.2e+02 Score=22.59 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
+.+..+-+.++++-..+. ++ ..+ . | +..+....++.++|+=- .|+......+.+..+++|..+++=.|+.
T Consensus 91 ~dL~~ir~~v~lPvLrKD-fi--~~~-~-q---i~ea~~~GAD~ilLi~a--~l~~~~l~~l~~~a~~lGl~~lvEv~~~ 160 (251)
T 1i4n_A 91 AFVRAARNLTCRPILAKD-FY--IDT-V-Q---VKLASSVGADAILIIAR--ILTAEQIKEIYEAAEELGMDSLVEVHSR 160 (251)
T ss_dssp HHHHHHHTTCCSCEEEEC-CC--CST-H-H---HHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHTTTCEEEEEECSH
T ss_pred HHHHHHHHhCCCCEEEee-CC--CCH-H-H---HHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 344445556676544332 33 222 2 2 55578899999999865 5888888888888889999999999999
Q ss_pred HHHHh---h-CCeEEEEeCCcee
Q psy2681 154 RLIRE---T-DCELWALEKKNIR 172 (211)
Q Consensus 154 ~~~~~---~-~~~v~~l~~g~i~ 172 (211)
+++.+ . ..+++.+++-.+.
T Consensus 161 eE~~~A~~l~g~~iIGinnr~l~ 183 (251)
T 1i4n_A 161 EDLEKVFSVIRPKIIGINTRDLD 183 (251)
T ss_dssp HHHHHHHTTCCCSEEEEECBCTT
T ss_pred HHHHHHHhcCCCCEEEEeCcccc
Confidence 88764 3 4567778775543
No 231
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=28.17 E-value=1.2e+02 Score=22.78 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHh---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEec
Q psy2681 103 ARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSH 151 (211)
Q Consensus 103 qRv~iaral~---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsH 151 (211)
+|+++..||. .+-++++.|+- .++....+.+.++|+.++ ..+++|+.
T Consensus 74 rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~~~~~~LiV~~ 125 (175)
T 2ftc_D 74 RALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRRWGDSVLLVDL 125 (175)
T ss_pred HHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCCCCCceEEEEC
Confidence 3556666653 35678888874 345555677888887764 34555543
No 232
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=28.13 E-value=35 Score=27.64 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHHHhcCC--------------CeEEEeCCCC-CCCHHHHHHHHHHH
Q psy2681 95 RDLSGGQKARVALAELTLNNP--------------DILILDEPTN-NLDIESIDALAEAI 139 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p--------------~lllLDEPt~-gLD~~~~~~l~~~l 139 (211)
--+.+|..++-+|.+|+-.+. ..+++||.++ .|+.....+...+.
T Consensus 200 i~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~~~~~ 259 (289)
T 1ne7_A 200 MILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLM 259 (289)
T ss_dssp EEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHHTH
T ss_pred EEEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhhHHHH
Confidence 346678888888888887654 3899999997 67765555554444
No 233
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=27.59 E-value=18 Score=27.82 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=23.0
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----c----CCeEEEEecChHHHHhhCCeEE
Q psy2681 111 TLNNPDILILDEPTNNLDIESIDALAEAIKN----Y----QGGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 111 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~----~~tiiivsHd~~~~~~~~~~v~ 164 (211)
++..|+..+++|++.+.|..+...+.+.|.. . ...+++++|+++.+.+-..+++
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 3556667777888888877666555544432 1 1356677777766655444443
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.20 E-value=50 Score=30.96 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=23.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
..+.+++|||. ..+++.....|++.+.+
T Consensus 659 ~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 659 RPYSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp CSSEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred CCCeEEEEecc-cccCHHHHHHHHHHhcc
Confidence 44589999999 46899999999999874
No 235
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=27.02 E-value=55 Score=28.12 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHH
Q psy2681 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156 (211)
Q Consensus 100 G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~ 156 (211)
.+.+....+...+.+++++|+......-......++.+.+++.+..+|++.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 466777778888888998888776554333445678888888777777777766554
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=26.81 E-value=1.8 Score=35.54 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 134 ALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 134 ~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
.+.+.++++..|+|.+.|+...+.++++++..+.+|+++
T Consensus 26 ~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~ 64 (295)
T 1ls1_A 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQV 64 (295)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccc
Confidence 344444444479999999999999999999888888765
No 237
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=26.79 E-value=68 Score=25.67 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHhc--CCeEEEEecChH
Q psy2681 114 NPDILILDEPTNNLD-IESIDALAEAIKNY--QGGVILVSHDER 154 (211)
Q Consensus 114 ~p~lllLDEPt~gLD-~~~~~~l~~~l~~~--~~tiiivsHd~~ 154 (211)
+++++++||.- .|. ......+...+.+. +..+|++|++..
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 78999999985 344 66777888888765 357788887754
No 238
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=26.69 E-value=40 Score=27.41 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=25.5
Q ss_pred CCCeEEEeCCCCCCCHH-HHHHHHHHHHhc-------CCeEEEEecChH
Q psy2681 114 NPDILILDEPTNNLDIE-SIDALAEAIKNY-------QGGVILVSHDER 154 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~-~~~~l~~~l~~~-------~~tiiivsHd~~ 154 (211)
+|.++++||.-.-.+.. ....+..++... +..+|++|++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 46799999987543221 445555555422 347889998773
No 239
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=26.28 E-value=1.2e+02 Score=24.39 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=28.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-------------CeEEEEecC
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ-------------GGVILVSHD 152 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-------------~tiiivsHd 152 (211)
+..+|++||. ..|....+..+...+.+.. ..||.+|+.
T Consensus 96 ~~g~L~LDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEI-GDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESC-TTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEecc-ccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 4689999995 4678888888999887531 357777775
No 240
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.87 E-value=58 Score=25.71 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=29.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChH
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 154 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~ 154 (211)
++.++++||. -.++......+...+.+.. ..+|++|++..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 4889999995 3466777778888887753 36777777653
No 241
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=25.34 E-value=12 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.1
Q ss_pred CeeeeecCCC--Ccccccc-ccCcc--------cCCcceEEe
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGEL--------TPNKGELRK 38 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~--------~p~~G~i~~ 38 (211)
..+-+|.|.. ++|||++ +.|.. .|+.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~i 45 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSV 45 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCc
Confidence 3455666776 4999999 98886 788888754
No 242
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=24.87 E-value=2e+02 Score=24.84 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=27.9
Q ss_pred HHHHHHHHh--cCCCeEEEeCCCCCCC-------H-HHHHHH----HHHHHhcCCeEEEEecCh
Q psy2681 104 RVALAELTL--NNPDILILDEPTNNLD-------I-ESIDAL----AEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 104 Rv~iaral~--~~p~lllLDEPt~gLD-------~-~~~~~l----~~~l~~~~~tiiivsHd~ 153 (211)
-+..++.+. .+|+++++|= ...+. . .....+ ..+.++++.+||+++|--
T Consensus 342 i~~~i~~~~~~~~~~lvVID~-l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDH-ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEEC-TTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEcc-chhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 344444443 4799999994 33332 1 112223 333355688999999854
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=24.80 E-value=60 Score=30.40 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCC----------HHHHHHHHHHHHhc----CCeEEEEecChHHHH
Q psy2681 103 ARVALAELTLNNPDILILDEPTNNLD----------IESIDALAEAIKNY----QGGVILVSHDERLIR 157 (211)
Q Consensus 103 qRv~iaral~~~p~lllLDEPt~gLD----------~~~~~~l~~~l~~~----~~tiiivsHd~~~~~ 157 (211)
-+..+..+....|.++++||+.+.+. ......+..++... +..+|.+||+.+.+.
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 34456666677899999999954432 22334455555433 247888899876553
No 244
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=24.59 E-value=8.7 Score=30.37 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=26.2
Q ss_pred ccCeeeeecCCC-Ccccccc-cc---CcccCCcceEE
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PK---GELTPNKGELR 37 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~---G~~~p~~G~i~ 37 (211)
.+..|.+++... ++||+.+ ++ |...|+.|.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 456788885554 5999999 98 99999999886
No 245
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=24.07 E-value=1.2e+02 Score=23.76 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHHh---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---CeEEEEecC
Q psy2681 103 ARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHD 152 (211)
Q Consensus 103 qRv~iaral~---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---~tiiivsHd 152 (211)
+|+++..||. .+-++++.|+- .++....+.+.++|+.++ ..+++|+.+
T Consensus 105 rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~LiV~~~ 158 (225)
T 1dmg_A 105 KKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQLSDKKTLIVLPW 158 (225)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCCCCCEEEEECC
Confidence 5677777774 45689999875 455566777888888774 445555543
No 246
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=23.92 E-value=1.9e+02 Score=21.23 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=25.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC
Q psy2681 115 PDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152 (211)
Q Consensus 115 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd 152 (211)
|+++|+| +.|. ....+.+.+++.+..+.++.++
T Consensus 1 ~~i~iiD----n~~s-~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLD----NIDS-FTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEE----CSCS-SHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEE----CCcc-HHHHHHHHHHHCCCeEEEEECC
Confidence 5799999 5554 4566788888888777777776
No 247
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=23.90 E-value=1.7e+02 Score=22.72 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=39.2
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 108 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
-.++....+++++|-. ..++|.....+.+.+++.+..++...|+.+++.+
T Consensus 95 ~~~~~aGad~I~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~ 144 (229)
T 3q58_A 95 DALAQAGADIIAFDAS-FRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGIS 144 (229)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHH
Confidence 3467789999999964 4456767777888888878888888999988864
No 248
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=23.67 E-value=66 Score=26.22 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=31.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChH
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 154 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~ 154 (211)
.+++++|+||.- .|...+...+.+.+.+.. ..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 457999999975 567778888888887653 36778888864
No 249
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.63 E-value=35 Score=25.44 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=32.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH----------HHHhhCCeEEEEe
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER----------LIRETDCELWALE 167 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~----------~~~~~~~~v~~l~ 167 (211)
.+++++++||--. +++.....+..+..+ +..|+++.++.+ .+...++.+..++
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999753 655544444444444 778888888543 2234577776553
No 250
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=23.50 E-value=28 Score=26.77 Aligned_cols=33 Identities=3% Similarity=0.086 Sum_probs=24.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEe
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRK 38 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~ 38 (211)
|....|..|.+++... ++||+++ ++|. +|+|..
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~ 49 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICL 49 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEE
Confidence 5566777888885554 5999999 9887 666654
No 251
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=23.33 E-value=1.4e+02 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCeEEEeCCCC
Q psy2681 105 VALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~ 125 (211)
-.+..+....|.++++||.-.
T Consensus 89 ~~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 89 SLFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp HHHHHHHHTCSEEEEEECC--
T ss_pred HHHHHHHhcCCeEEEEeCcch
Confidence 345555566799999999865
No 252
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.33 E-value=1.6e+02 Score=19.24 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=24.1
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecC
Q psy2681 112 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHD 152 (211)
Q Consensus 112 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd 152 (211)
-.+|+++|+|-...+.|.. .+.+.+++. ...||++|..
T Consensus 44 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNGI---QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHHTTCCSEEEEEECC
T ss_pred hcCCCEEEEecCCCCCChH---HHHHHHHhcCCCCeEEEEeCC
Confidence 4689999999888776643 344455543 2355555543
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=22.97 E-value=1.2 Score=38.18 Aligned_cols=33 Identities=9% Similarity=-0.117 Sum_probs=29.6
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEE-EeCCCC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILI-LDEPTN 125 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lll-LDEPt~ 125 (211)
....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 279 ~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 279 NEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp CSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 567799999999999888899999988 999996
No 254
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=22.94 E-value=2.7e+02 Score=21.66 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCCeEEEeCCCC--------CCCHHHHHHHHHHHHhcC--CeEEEEec
Q psy2681 114 NPDILILDEPTN--------NLDIESIDALAEAIKNYQ--GGVILVSH 151 (211)
Q Consensus 114 ~p~lllLDEPt~--------gLD~~~~~~l~~~l~~~~--~tiiivsH 151 (211)
++.+|++||--. ..+......|.+.+.+.. ..+|++|+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 688999999753 236777788888887763 35666665
No 255
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=22.83 E-value=15 Score=29.58 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCh-HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q psy2681 73 YEKSRRQLGMFGLPSYAHTIPIRDLSG-GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 144 (211)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~LSg-G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 144 (211)
-+.+-.+++.+|.+.... .|.+-|+. -|-+-++=|+| . ..+ .=|||.|+|.++...+.+...+.+.
T Consensus 170 vetAiaml~dmG~~SvKf-fPM~Gl~~leEl~avAkAca--~-~g~--~lEPTGGIdl~Nf~~I~~i~l~aGv 236 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKY-FPMKGLAHEEEYRAVAKACA--E-EGF--ALEPTGGIDKENFETIVRIALEANV 236 (275)
T ss_dssp HHHHHHHHHHHTCCEEEE-CCCTTTTTHHHHHHHHHHHH--H-HTC--EEEEBSSCCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCeeeE-eecCCcccHHHHHHHHHHHH--H-cCc--eECCCCCccHhHHHHHHHHHHHcCC
Confidence 345566788888875433 25555554 44444444433 3 333 4499999999999999999988764
No 256
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=22.76 E-value=1.8e+02 Score=22.55 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=39.2
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 108 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
-.++....+++++|-. ..++|.....+.+.+++.+..++...|+.+++.+
T Consensus 95 ~~~~~~Gad~V~l~~~-~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~ 144 (232)
T 3igs_A 95 DALAQAGAAIIAVDGT-ARQRPVAVEALLARIHHHHLLTMADCSSVDDGLA 144 (232)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHH
Confidence 4467789999999964 4456777777888888878888888999988864
No 257
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.93 E-value=15 Score=29.30 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCh-HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCe
Q psy2681 73 YEKSRRQLGMFGLPSYAHTIPIRDLSG-GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145 (211)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~LSg-G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~t 145 (211)
-+.+-.+++.+|.+.... .|.+-|+. -|-+-+ |.|-+. ..+ .=|||.|+|.++...+.+...+.+..
T Consensus 147 vetAiaml~dmG~~SvKf-fPm~Gl~~l~E~~av--Aka~a~-~g~--~lEPTGGIdl~N~~~I~~i~l~aGv~ 214 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKY-FPMGGLKHRAEFEAV--AKACAA-HDF--WLEPTGGIDLENYSEILKIALDAGVS 214 (249)
T ss_dssp HHHHHHHHHHTTCCEEEE-CCCTTTTTHHHHHHH--HHHHHH-TTC--EEEEBSSCCTTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCeeeE-eecCCcccHHHHHHH--HHHHHH-cCc--eECCCCCccHhhHHHHHHHHHHcCCC
Confidence 355667888889876443 25555554 444434 444333 344 44999999999999999998887653
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=21.61 E-value=3.4e+02 Score=22.60 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHH--h--cCCCeEEEeCCCCCCC-H----H---------HH-HH-------HHHHHHhcCCeEEEEecC
Q psy2681 99 GGQKARVALAELT--L--NNPDILILDEPTNNLD-I----E---------SI-DA-------LAEAIKNYQGGVILVSHD 152 (211)
Q Consensus 99 gG~kqRv~iaral--~--~~p~lllLDEPt~gLD-~----~---------~~-~~-------l~~~l~~~~~tiiivsHd 152 (211)
-++++.+.++.++ + .+|++++.|=-++-.- . . .+ +. |..++++.+.++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 4677667777776 3 4799999998776541 0 0 11 12 222345567899999998
Q ss_pred hH
Q psy2681 153 ER 154 (211)
Q Consensus 153 ~~ 154 (211)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 259
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=21.50 E-value=2.1e+02 Score=19.86 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHH
Q psy2681 55 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106 (211)
Q Consensus 55 l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~ 106 (211)
+..+..+.-.+...++.....+..+++.+|++.. .++++||--|-.++.
T Consensus 8 i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~---~r~~~Lt~~ei~~l~ 56 (114)
T 3r8n_M 8 IPDHKHAVIALTSIYGVGKTRSKAILAAAGIAED---VKISELSEGQIDTLR 56 (114)
T ss_dssp CCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTT---CCSTTCCHHHHHHHH
T ss_pred CCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcc---cCcccCCHHHHHHHH
Confidence 4455565555556778888899999999999753 378999999877764
No 260
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.32 E-value=2e+02 Score=24.75 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCC----------CCHHHHHHHHHHHHhc-------CCeEEEEecChHHHH
Q psy2681 103 ARVALAELTLNNPDILILDEPTNN----------LDIESIDALAEAIKNY-------QGGVILVSHDERLIR 157 (211)
Q Consensus 103 qRv~iaral~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~ 157 (211)
-|-.+..|-...|.|+++||--+- -|......+..+|..+ +.-||.+|+.++.+.
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 456677777889999999997542 2333444455555443 135888888776553
No 261
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=20.86 E-value=2.9e+02 Score=22.01 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=42.7
Q ss_pred HHHHHhcCCCeEEE-eCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh---hCCeEEEEeC
Q psy2681 107 LAELTLNNPDILIL-DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE---TDCELWALEK 168 (211)
Q Consensus 107 iaral~~~p~lllL-DEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~---~~~~v~~l~~ 168 (211)
+..|.....+.++| +- .|++.....+.+..++++..+++..|+.+++.. ...+++.+++
T Consensus 128 v~~A~~~GAD~VlLi~a---~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~ 190 (272)
T 3qja_A 128 IHEARAHGADMLLLIVA---ALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNA 190 (272)
T ss_dssp HHHHHHTTCSEEEEEGG---GSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHcCCCEEEEecc---cCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECC
Confidence 45566789999888 32 456677777888888889899999999988754 3345566654
No 262
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=20.51 E-value=44 Score=23.76 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=24.6
Q ss_pred cCCCeEEEeCCCCCCC-------HHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 113 NNPDILILDEPTNNLD-------IESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD-------~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
.+|.++++||--.-.+ ......+..++...+..+|++|+...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 4577999999754321 12234444555444557777777654
No 263
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.13 E-value=2.4e+02 Score=28.99 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCCCH--------------HHH---HH---HHHHHHhcCCeEEEEecC
Q psy2681 105 VALAELTL--NNPDILILDEPTNNLDI--------------ESI---DA---LAEAIKNYQGGVILVSHD 152 (211)
Q Consensus 105 v~iaral~--~~p~lllLDEPt~gLD~--------------~~~---~~---l~~~l~~~~~tiiivsHd 152 (211)
+.+++.++ .+|+++++|..++-... ..+ .. +..++++.+.+||+++|-
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 34555553 58999999999886641 111 11 222245667899999884
No 264
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=20.09 E-value=75 Score=25.81 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChH
Q psy2681 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 154 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~ 154 (211)
+.+++|+||+- .|...+...|++.|.+.. ..+|++|++..
T Consensus 82 ~~kvviIdead-~lt~~a~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CceEEEeccHH-HhCHHHHHHHHHHHhCCCCCeEEEEEECChH
Confidence 45899999985 467788888999998763 36778888874
Done!