RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2681
(211 letters)
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 171 bits (435), Expect = 1e-50
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 85
GEL P G ++ ++IG FDQH + L PD T E L + F + ++ R LG FG
Sbjct: 370 GELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
P+ LSGG+KAR+ LA+L L P++L+LDEPTN+LDIES++AL EA+ +++G
Sbjct: 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT 488
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185
V+LVSHD + +W +E K + +F G ++DY E+
Sbjct: 489 VLLVSHDRYFLDRVATRIWLVEDK-VEEFEGGYEDYLEQK 527
Score = 119 bits (301), Expect = 1e-31
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 37/193 (19%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR-------- 78
GEL P+ GE+ + LR+G Q L P+ T +Y+++ F E
Sbjct: 51 GELEPDSGEVTRPKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 79 ----------------QLGMFGLPSYAHTI-----------PIRDLSGGQKARVALAELT 111
+L + L + A P+ LSGG + RVALA
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 112 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 171
L PD+L+LDEPTN+LD+ESI+ L + +K Y G VI+VSHD + + L++ +
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKL 228
Query: 172 RKFNGDFDDYREK 184
+ G++ Y E+
Sbjct: 229 TPYKGNYSSYLEQ 241
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 139 bits (351), Expect = 4e-38
Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 85
GEL P+ G + +S ++R+ F QH + L P Y+M+ F +P +K R LG FG+
Sbjct: 557 GELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 616
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
P+ LSGGQK+RVA A++T P IL+LDEP+N+LD+++++AL + + +QGG
Sbjct: 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGG 676
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185
V++VSHDE LI + ELW + + + F+G F DY++ L
Sbjct: 677 VLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716
Score = 56.4 bits (136), Expect = 2e-09
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
+ SGG + R+ALA PD+L+LDEPTN+LD+ ++ L + + I+VSH
Sbjct: 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402
Query: 155 LIRETDCELWALEKKNIRKFNGDFDDY 181
+ ++ L + + + GD+D +
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDYDTF 429
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 116 bits (292), Expect = 4e-33
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 47/143 (32%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
GEL P++G + ++IG F+Q
Sbjct: 48 GELEPDEGIVTWGSTVKIGYFEQ------------------------------------- 70
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
LSGG+K R+ALA+L L NP++L+LDEPTN+LD+ESI+AL EA+K Y G V
Sbjct: 71 ----------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTV 120
Query: 147 ILVSHDERLIRETDCELWALEKK 169
ILVSHD + + ++ LE
Sbjct: 121 ILVSHDRYFLDQVATKIIELEDG 143
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 120 bits (302), Expect = 1e-31
Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-LGMFGL 85
GEL P GE+ + +++G F QH E L D++P ++L +L E+ R LG FG
Sbjct: 360 GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGF 419
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
T R SGG+KAR+ LA + P++L+LDEPTN+LD++ AL EA+ +++G
Sbjct: 420 QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGA 479
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLL 186
+++VSHD L+R T +L+ + + F+GD +DY++ L
Sbjct: 480 LVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLS 520
Score = 67.5 bits (165), Expect = 3e-13
Identities = 32/99 (32%), Positives = 64/99 (64%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
P+ D SGG + R+ LA+ + D+L+LDEPTN+LD++++ L + +K+YQG +IL+SHD
Sbjct: 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHD 205
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 191
+ ++ +E++++ ++ G++ + + T L +
Sbjct: 206 RDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQ 244
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 94.2 bits (235), Expect = 2e-22
Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 23/168 (13%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK--------SRR 78
G+L + G + +L + FDQH E L P+ T + NL K R
Sbjct: 367 GQLQADSGRIHCGTKLEVAYFDQHRAE-LDPEKTVMD------NLAEGKQEVMVNGRPRH 419
Query: 79 QLG-----MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
LG +F P A T P++ LSGG++ R+ LA L L ++LILDEPTN+LD+E+++
Sbjct: 420 VLGYLQDFLFH-PKRAMT-PVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE 477
Query: 134 ALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKN-IRKFNGDFDD 180
L E + +YQG V+LVSHD + + T E W E I ++ G + D
Sbjct: 478 LLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525
Score = 79.6 bits (197), Expect = 2e-17
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL + LSGG + AL ++NPD+L+LDEPTN+LDIE+I+ L +
Sbjct: 143 LAQLGLD--PDA-ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199
Query: 140 KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181
K +QG +I +SHD IR + L++ + + G++D Y
Sbjct: 200 KTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 90.3 bits (225), Expect = 4e-21
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQL-- 80
GEL P+ G ++ S IG + Q + F +D + LF+ E Q
Sbjct: 367 GELEPDSGTVKWSENANIGYYAQDH-AYDFEND------LTLFDWMSQWRQEGDDEQAVR 419
Query: 81 GMFG-LPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
G G L I ++ LSGG+K R+ +L + P++L++DEPTN++D+ESI++L
Sbjct: 420 GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479
Query: 138 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181
A++ Y+G +I VSHD + + + + F+G +++Y
Sbjct: 480 ALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
Score = 76.1 bits (188), Expect = 3e-16
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
G+P H + +++ G K RV LA+ +NPDIL+LDEPTNNLDI +I L + +
Sbjct: 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERN 202
Query: 144 GGVILVSHDERLIRETDCELWA-LEKKNIRKFNGDFDDY-------REKLLTS 188
+I++SHD R + C A L+ +R + G++D+Y RE+LL
Sbjct: 203 STMIIISHD-RHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLAD 254
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 85.4 bits (212), Expect = 4e-20
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 20/144 (13%)
Query: 27 GELTPNKGELR---KSPRLRIGKFDQHSG-----EHLFPDDTPCEYLM---KLFNLPYEK 75
G L P GE+ K + G L+P+ T E L +L+ L E+
Sbjct: 53 GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE 112
Query: 76 SRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
+ + L +FGL A+ +R LSGG K R+++A L++P++LILDEPT+ LD ES
Sbjct: 113 AEERIEELLELFGLEDKANK-KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 132 IDALAEAIKNY--QGG--VILVSH 151
+ E ++ +GG ++L +H
Sbjct: 172 RREIWELLRELAKEGGVTILLSTH 195
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 82.5 bits (205), Expect = 1e-19
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 66 MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
++ LP E+ + L + GL LSGGQK RVA+A + +PDIL+LD
Sbjct: 101 LENLGLPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 122 EPTNNLDIESIDALAEAIKNYQG---GVILVSHDERLIRE 158
EPT LD L E +K + +I+V+HD L+ E
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 82.7 bits (205), Expect = 2e-18
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
+ LSGG++ RVAL L L+ PD+L+LDEPTN+LD ES+ L + ++ Y G V+ V+HD
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
Score = 78.8 bits (195), Expect = 3e-17
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 11/174 (6%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQ 79
G+ P+ G ++ +++ DQ S + L P+ T E +++L E SR
Sbjct: 370 GQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIQLGK--REVPSRAY 426
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
+G F + LSGG++ RV LA+ + ++L+LDEPTN+LD+E++ AL EA+
Sbjct: 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486
Query: 140 KNYQGGVILVSHDERLIRETDCELWALE-KKNIRKFNGDFDDYREKLLTSLGEA 192
+ G +++SHD + + A E ++ F G++ +Y E LGE
Sbjct: 487 LEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGED 540
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 77.0 bits (190), Expect = 2e-18
Identities = 42/115 (36%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 27 GELTPNKGEL------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74
G L P G + RK R RIG Q LFP+ T E L F L +
Sbjct: 9 GLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENLF--FGLRDK 64
Query: 75 KSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125
++ + L GLP + P+ LSGGQK RVA+A L P +L+LDEPT
Sbjct: 65 EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 82.5 bits (205), Expect = 2e-18
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
+ LSGG++ RVAL L L PD+L+LDEPTN+LD ES+ L + + +Y G V+ V+HD
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219
Score = 65.1 bits (160), Expect = 2e-12
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQ 79
G+ P+ G ++ +++ DQ S + L P+ T E ++K+ N E SR
Sbjct: 372 GQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIKVGN--REIPSRAY 428
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
+G F + LSGG++ R+ LA+ ++L+LDEPTN+LD+E++ AL EA+
Sbjct: 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 140 KNYQGGVILVSHDERLIRETDCELWALEK-----------KNIRKFNGDFDDYREKLLTS 188
+ G +++SHD W L++ + F G+F +Y E
Sbjct: 489 LEFPGCAVVISHDR----------WFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKKRR 538
Query: 189 LGEA 192
LG
Sbjct: 539 LGAD 542
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 79.6 bits (197), Expect = 4e-18
Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 20 LSFIKP-KGELTPNKGELRK-SPRLRIGKFDQHSG-EHLFP---DDT---PCEYLMKLFN 70
L +KP GE+ +RK RLRIG Q S + FP D F
Sbjct: 51 LGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110
Query: 71 LPYEKSRR-------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
+K + ++GM I +LSGGQK RV LA NPD+L+LDEP
Sbjct: 111 RLNKKDKEKVDEALERVGMED---LRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 124 TNNLDIESIDALAEAIKNY--QG-GVILVSHD 152
+D+ + + +K +G V++V+HD
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 76.5 bits (189), Expect = 7e-18
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 68 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
+ LP E+ RR++G + LSGGQ+ RVALA L NPD+L+LDEPT+ L
Sbjct: 63 IAKLPLEELRRRIGY-----------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
Query: 128 DIESIDALAEAIKNYQGG---VILVSHDERLIRE 158
D S + L E ++ VI+V+HD L
Sbjct: 112 DPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 76.8 bits (190), Expect = 2e-17
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 54 HLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106
+L PD T P K + L + GL +LSGGQ+ RVA
Sbjct: 93 NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152
Query: 107 LAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRETD 160
+A +NNP I++ DEPT NLD ++ ++ L E K +I+V+HD L + D
Sbjct: 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 75.4 bits (186), Expect = 5e-17
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 12 VLQGLRNPLSFIKP-KGELTPNKGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYLMKLF 69
+L GL IK G + N ++ R + IG Q LF D E L+ L
Sbjct: 45 ILAGL------IKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98
Query: 70 NLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
L E++ L L + P LSGGQK R+A+A L+ D+LI DEPT+ L
Sbjct: 99 ELDAGNEQAETVLKDLDLYALKERHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
Query: 128 DIESIDALAEAIKNYQG---GVILVSHDERLI 156
D ++++ + E I+ VI+++HD +
Sbjct: 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFL 189
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 75.6 bits (187), Expect = 6e-17
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-- 131
E++ L GL + P +LSGGQ+ RVA+A N+P I++ DEPT NLD E+
Sbjct: 119 ERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 132 --IDALAEAIKNYQGGVILVSHDERLIRETD 160
++ L E K +++V+HD L D
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDPELAEYAD 208
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 74.3 bits (184), Expect = 6e-17
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 94 IRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILV 149
IR+ LSGGQ+ R+A+A L +P ILILDE T+ LD E+ + EA++ G VI++
Sbjct: 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVI 151
Query: 150 SHDERLIRETD 160
+H IR+ D
Sbjct: 152 AHRLSTIRDAD 162
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 73.3 bits (181), Expect = 4e-16
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 27 GELTPNKGELRKSP------RLRIGKFDQHSG-EHLFPDD------TPCEYLMKLFNLPY 73
G L P G +R R RIG Q + FP LF
Sbjct: 47 GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF-RRL 105
Query: 74 EKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
K+ + L GL A I +LSGGQ+ RV LA + +PD+L+LDEP +D
Sbjct: 106 SKADKAKVDEALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 129 IESIDALAEAIKNYQG---GVILVSHD 152
++ + + E ++ + +++V+HD
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHD 191
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 72.3 bits (178), Expect = 1e-15
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL P +LSGGQK RVA+A + P+IL+LDEPT LD + L E +
Sbjct: 123 LELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 140 KNY--QGG--VILVSHDERLIRETDCELWALEKKNIRKF 174
K +GG +I+V+HD L+ E + L+ I
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 69.7 bits (172), Expect = 4e-15
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 152
LSGG K R+ALA+ L++P++LILDEPT+ LD ES E ++ ++L SH
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 153 ERLIRE 158
Sbjct: 155 LEEAER 160
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 71.5 bits (176), Expect = 1e-14
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+ALA L+ P IL+LDE T+ LD E+ + + + G VI+++H
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669
Query: 155 LIRETD 160
IR D
Sbjct: 670 TIRSAD 675
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 68.4 bits (168), Expect = 2e-14
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 97 LSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGG---- 145
SGG+K R+ALAE +N IL LDEPT NLD E+I+ +LAE I+ +
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 146 VILVSHDERLIRETDCELWALEK 168
+I+++HDE L+ D ++ +EK
Sbjct: 176 LIVITHDEELVDAAD-HIYRVEK 197
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 70.4 bits (173), Expect = 3e-14
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
LSGGQ R+ALA L+ +L+LDEPT +LD E+ + AL E K Q V++++
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVIT 512
Query: 151 HDERLIRETDC 161
H + D
Sbjct: 513 HRLEDAADADR 523
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 70.3 bits (173), Expect = 3e-14
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 73 YEKSRRQLGMFGLP------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
+++ L GLP Y H LSGG + RV +A P +LI DEPT
Sbjct: 130 RKRAVELLEQVGLPDPERRDRYPH-----QLSGGMRQRVMIAMALALKPKLLIADEPTTA 184
Query: 127 LD----IESIDALAEAIKNYQGGVILVSHDERLIRET 159
LD + +D L + + V+ ++HD ++ E
Sbjct: 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Score = 51.8 bits (125), Expect = 6e-08
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 68 LFNLPYEKSRRQ------LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 120
+ + R+ L + GLP + P +LSGGQ+ RVA+A P +LIL
Sbjct: 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEPKLLIL 453
Query: 121 DEPTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRET 159
DEP + LD + ++ L + + + +SHD ++R
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 68.3 bits (168), Expect = 4e-14
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFNLP----YEKSRR 78
GE +K ++ K R ++G Q +LFP T +K+ L EK+
Sbjct: 63 GEDVGDKKDILKL-RRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
L GL A P + LSGGQ+ RVA+A +P +++ DEPT+ LD E + + +
Sbjct: 120 LLEKVGLADKADAYPAQ-LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 139 IKNY--QG-GVILVSHDERLIRE 158
+K+ +G +I+V+H+ RE
Sbjct: 179 MKDLAEEGMTMIIVTHEMGFARE 201
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 67.9 bits (167), Expect = 5e-14
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 32/133 (24%)
Query: 40 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----FGLPS-----YA 89
PR+ IG E + E L L +++R++ + GLP Y
Sbjct: 97 PRMTIG-------EQI------AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP 143
Query: 90 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGG 145
H +LSGGQ+ RVA+A NP +LI DEPT+ LD+ +D L + +
Sbjct: 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198
Query: 146 VILVSHDERLIRE 158
++ ++HD ++ +
Sbjct: 199 LLFITHDLGVVAK 211
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 66.5 bits (163), Expect = 6e-14
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDE 153
LSGGQ+ R+ LA NP IL+LDEP ++LD+E AL +AI + I+++H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 154 RLIRETD 160
+ D
Sbjct: 157 ETLASAD 163
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 68.1 bits (167), Expect = 6e-14
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI--- 129
++ L GLP S+ P +LSGGQ+ R+A+A + P +LILDEPT+ LD+
Sbjct: 119 QRIAELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 130 -ESIDALAEAIKNYQGGVILVSHDERLIR 157
+ ++ L E K + +SHD L+
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVE 206
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 65.9 bits (162), Expect = 1e-13
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVIL 148
P +LSGG++ RV LA P IL+LDEPT++LDI E ++ L + V++
Sbjct: 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153
Query: 149 VSHD 152
V HD
Sbjct: 154 VLHD 157
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 66.8 bits (164), Expect = 1e-13
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 27 GELTPNKGEL----------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 76
GEL P G RK+ R +G Q LF + T E+L +
Sbjct: 50 GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA--LFDELTVREHLR-FYARLKGLP 106
Query: 77 RRQ--------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ + L + GL A+ R LSGG K +++LA + P +L+LDEPT+ LD
Sbjct: 107 KSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
Query: 129 IESIDALAEAIKNYQGG--VILVSHD 152
S A+ + I + G +IL +H
Sbjct: 166 PASRRAIWDLILEVRKGRSIILTTHS 191
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 68.0 bits (166), Expect = 1e-13
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLP----YEKSRRQLGMFG 84
+ ELR+ R +IG Q LFP T +L P EK+ L + G
Sbjct: 61 SPVELREVRRKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG 118
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---- 140
L Y H P +LSGG + RV LA PDIL++DE + LD D++ + +K
Sbjct: 119 LEEYEHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 141 NYQGGVILVSHD 152
Q ++ ++HD
Sbjct: 178 TLQKTIVFITHD 189
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 68.5 bits (168), Expect = 1e-13
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
LSGGQ R+ALA L + +L+LDEPT +LD E+ + EA++ G V+LV+H
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
Query: 153 ERLIRETDCELWAL 166
L D + L
Sbjct: 517 LALAALAD-RIVVL 529
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 66.1 bits (162), Expect = 2e-13
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
L +L + ++ L + GL A ++ S G K R+ +A L NPD+LILDE
Sbjct: 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALALLGNPDLLILDE 152
Query: 123 PTNNLDIESIDALAEAIKNY--QGGVILVS 150
PTN LD + I L E I + QG +L+S
Sbjct: 153 PTNGLDPDGIKELRELILSLRDQGITVLIS 182
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 66.4 bits (163), Expect = 2e-13
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 27 GELTPNKG---------------ELRKSPRLRIGKFDQHSGEHLFPDDTPCE----YLMK 67
G L P+ G EL + R R+G Q LF T E L +
Sbjct: 48 GLLRPDSGEVLIDGEDISGLSEAELYRL-RRRMGMLFQSGA--LFDSLTVFENVAFPLRE 104
Query: 68 LFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
L E+ R L GL P +LSGG K RVALA +P++L+ DEP
Sbjct: 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEP 163
Query: 124 TNNLDIESIDALAEAIKNYQG----GVILVSHD 152
T LD + + + I++ + I+V+HD
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 65.7 bits (161), Expect = 2e-13
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESID 133
L GL A P + LSGG++ RVA+A +N+P +L+ DEPT NLD E I
Sbjct: 119 GAALRQVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 134 ALAEAIKNYQGGVILVSHDERLIR 157
L + + VI+ +HD L+
Sbjct: 178 DLLKRLNKRGTTVIVATHDLSLVD 201
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 65.4 bits (160), Expect = 3e-13
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK-- 140
GL +P+ LS GQ+ RVALA L L+ + ILDEP LD E + L +
Sbjct: 118 VGLAGLED-LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
Query: 141 -NYQGGVILVSHDER 154
G V+L +H
Sbjct: 177 AAQGGIVLLTTHQPL 191
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 64.9 bits (159), Expect = 5e-13
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
R LSGGQ+ VALA LN+P IL+LDEPT+ +D+ S + L E ++ G +I+++H
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR 198
Query: 153 ERLIRETD 160
L+ D
Sbjct: 199 PSLLDLVD 206
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 64.5 bits (158), Expect = 6e-13
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142
GL AH +P LS GQK RVALA L ++N I ILDEPT LD ++ AE I+ +
Sbjct: 115 VGLAPLAH-LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
Query: 143 --QGGVILVS 150
QGG+++ +
Sbjct: 174 LAQGGIVIAA 183
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 65.0 bits (159), Expect = 1e-12
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFG 84
++ ELR+ R +I Q L P T E + +++ +P E++ L + G
Sbjct: 92 SRKELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVG 149
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIK 140
L + H P +LSGG + RV LA +PDIL++DE + LD E D L
Sbjct: 150 LEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 141 NYQGGVILVSHD 152
Q ++ ++HD
Sbjct: 209 ELQKTIVFITHD 220
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 63.4 bits (155), Expect = 1e-12
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 16/92 (17%)
Query: 74 EKSRRQLGM----FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPT 124
RR++GM F L + + + LSGGQ+ RVALA +PD+L+LDEPT
Sbjct: 72 PPLRRRIGMVFQDFALFP---HLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT 128
Query: 125 NNLDIE---SIDALAEAIKNYQG-GVILVSHD 152
+ LD + AL ++++ G V+LV+HD
Sbjct: 129 SALDPITRREVRALLKSLQAQLGITVVLVTHD 160
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 64.3 bits (157), Expect = 2e-12
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 73 YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
+++ + + + GL SY P +LSGGQK RVALA + PD L+ DEPT LD +
Sbjct: 142 KKRAAKYIELVGLDESYLQRSPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 132 IDALAEAIKN-YQGG--VILVSHD 152
+ + E N + G +ILV+HD
Sbjct: 201 VKEILEIFDNLNKQGKTIILVTHD 224
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 62.9 bits (154), Expect = 2e-12
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 16/99 (16%)
Query: 72 PYEKSRRQLGMFGLPSYAHTIP-------IRDL----SGGQKARVALAELTLNNPDILIL 120
P E++R LG+F Y IP +R + SGG+K R + +L L PD+ IL
Sbjct: 71 PEERAR--LGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAIL 128
Query: 121 DEPTNNLDIESIDALAEAIKNYQG---GVILVSHDERLI 156
DEP + LDI+++ +AE I + V++++H +RL+
Sbjct: 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLL 167
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 62.4 bits (152), Expect = 3e-12
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142
GL + +P LS GQ+ R+ALA L L+ + ILDEPT LD + LA ++ +
Sbjct: 116 GLTGFED-LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174
Query: 143 --QGGVILVSHDERLIRET 159
G V+L +H + + E
Sbjct: 175 ARGGIVLLTTHQDLGLVEA 193
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 64.6 bits (158), Expect = 3e-12
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVSHDE 153
LSGGQ+ R+ALA +P +++LDEP +NLD E ALA AI +GG V++++H
Sbjct: 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532
Query: 154 RLIRETD 160
+ D
Sbjct: 533 SALASVD 539
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 62.4 bits (152), Expect = 4e-12
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL +P +LSGG++ RVA+A +N+P ILI DEPT NLD ++ + +
Sbjct: 121 LELVGLSHKHRALP-AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179
Query: 140 K--NYQGGVILVS-HDERLIRETDCELWALEK 168
K N G ++V+ H + L+ T + ALE+
Sbjct: 180 KKINKAGTTVVVATHAKELVDTTRHRVIALER 211
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 63.4 bits (155), Expect = 5e-12
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 73 YEKSRRQLGMFGLP-------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125
E++ L + G+P SY H +LSGG + RV +A NP +LI DEPT
Sbjct: 128 KERAIELLELVGIPDPERRLKSYPH-----ELSGGMRQRVMIAMALALNPKLLIADEPTT 182
Query: 126 NLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 158
LD+ +D L E + +IL++HD ++ E
Sbjct: 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE 219
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 62.6 bits (153), Expect = 5e-12
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 129
E+++ L + GL + P LSGG + RVA+A P +L+LDEP LD
Sbjct: 109 ERAKELLELVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167
Query: 130 ESIDALAEAIKNYQGGVILVSHD 152
E D L + + V+LV+HD
Sbjct: 168 ELQDELLRLWEETRKTVLLVTHD 190
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 62.6 bits (153), Expect = 5e-12
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI--- 129
E L + GL A P+ +LSGG++ RV +A IL+LDEPT++LDI
Sbjct: 116 EEIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 130 -ESIDALAEAIKNYQGGVILVSHD 152
E ++ L + + V++V HD
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHD 198
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 63.1 bits (154), Expect = 6e-12
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 16 LRNPLSFIKP-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL 71
R L ++P +GE+T N G L + + RIG + G L+P T + YL +L +
Sbjct: 45 FRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG--LYPKMTVEDQLKYLAELKGM 102
Query: 72 PYEKSRRQLGM----FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
P + +++L + I++LS G + ++ ++ P++LILDEP + L
Sbjct: 103 PKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161
Query: 128 DIESIDALAEAIKNY--QGGVILVS-----HDERLIRETDCELWALEKKNIRKFNGDFDD 180
D +++ L +AI +G I+ S H E L C+ + KK G +D
Sbjct: 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL-----CDRLLMLKKGQTVLYGTVED 216
Query: 181 YR 182
R
Sbjct: 217 IR 218
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 62.4 bits (152), Expect = 7e-12
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQLGMF 83
G + P++G ++++ +LRIG Q L+ D T ++L P K L
Sbjct: 52 GLVAPDEGVIKRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRL--RPGTKKEDILPAL 105
Query: 84 GLPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
H I P++ LSGG+ RV LA LN P +L+LDEPT +D+ AL + I
Sbjct: 106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165
Query: 142 YQG----GVILVSHDERLI 156
+ V++VSHD L+
Sbjct: 166 LRRELDCAVLMVSHDLHLV 184
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 63.2 bits (154), Expect = 8e-12
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A L NP ILILDE T+ LD E+ + +A+K G ++++H
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 155 LIRETDCELWALEKKNIRKF 174
I+ D + L+ I +
Sbjct: 526 TIKNAD-RIIVLDNGRIVER 544
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 61.6 bits (150), Expect = 9e-12
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 12 VLQGLRNPLSFIKPKGELTPNKGELRKSPRLRIGKF-DQHSG-----EHLFPDDTPCEYL 65
+L GL NP S GE+ N L K K ++ G HL PD T E +
Sbjct: 50 LLGGLDNPTS-----GEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV 104
Query: 66 MKLFNLPY-----------EKSRRQLGMFGLPSYAHTIPIR--DLSGGQKARVALAELTL 112
+P E++ L GL H I R +LSGG++ RVA+A +
Sbjct: 105 A----MPLLIGKKSVKEAKERAYEMLEKVGL---EHRINHRPSELSGGERQRVAIARALV 157
Query: 113 NNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETD 160
N P +++ DEPT NLD + + + + + ++V+HD L ++ D
Sbjct: 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLD 209
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 62.4 bits (152), Expect = 9e-12
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 73 YEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
+ +R + + GL Y P +LSGGQK RVA+A + P ILILDEPT LD +
Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 131 SIDALAEAIKN----YQGGVILVSH 151
D + IK Y +ILVSH
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSH 203
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 62.8 bits (153), Expect = 1e-11
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDE 153
LSGGQ+ R+ALA +P +++LDEP +NLD E ALA AIK + V++++H
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514
Query: 154 RLIRETD 160
L+ D
Sbjct: 515 SLLGCVD 521
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 61.3 bits (149), Expect = 1e-11
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
++ L GL P LSGG++ RVALA PD+L DEPT NLD +
Sbjct: 123 SRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
Query: 132 IDALAEAI--KNYQGG--VILVSHDERL 155
D +A+ + N + G ++LV+HD +L
Sbjct: 182 GDKIADLLFALNRERGTTLVLVTHDPQL 209
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 62.6 bits (153), Expect = 1e-11
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
R LSGGQ+ VALA L +P IL+LDEPT+ +D S + + +K + G ++LV+H
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 60.6 bits (148), Expect = 2e-11
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 64 YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 119
+ +KL +P + R + L + GL + P +LSGGQ+ RVALA P +L+
Sbjct: 95 FGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-HELSGGQQQRVALARALAREPSLLL 153
Query: 120 LDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 152
LDEP + LD + + L E +K Q I V+HD
Sbjct: 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 60.7 bits (148), Expect = 2e-11
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A L +P ILILDE T+ LD ES + A++ +++H R
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH--R 196
Query: 155 L--IRETD 160
L I D
Sbjct: 197 LSTIENAD 204
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 60.7 bits (148), Expect = 2e-11
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 27 GELTPNKGELR-------KSPRLRIGKFDQHSG-----EHLFPDDTPCE---YLMKLFNL 71
GE P +G++ + I + G L PD T E +++
Sbjct: 50 GEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK 109
Query: 72 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
P + RR+ L + GL A +P LSGG++ RVA+A +N P +L+ DEPT NL
Sbjct: 110 PPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 128 DIESIDALAEAIK------NYQG-GVILVSHDERLIR 157
D L+ I N G V++ +HD L+
Sbjct: 169 D----PDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 60.5 bits (148), Expect = 2e-11
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E++ L GL A P +LS GQ+ R+ +A +P +L+LDEP L+ E +
Sbjct: 122 ERAEELLERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 134 ALAEAIK--NYQG-GVILVSHDERLIRE 158
LAE I+ +G V+LV HD ++
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMS 208
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 60.4 bits (147), Expect = 2e-11
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E++R L GL + P +LSGGQK RVA+A ++ P +++ DEPT LD +S
Sbjct: 120 ERARAMLEAVGLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178
Query: 134 ALAEAIKN---YQGGVIL-VSHDERLIRETD 160
+ E ++ QG IL V+HD R++ D
Sbjct: 179 DVVELMQKLAREQGCTILIVTHDNRILDVAD 209
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 61.6 bits (150), Expect = 3e-11
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFG 84
+ ELR+ R +I Q L P T E + +++ +P E++ L + G
Sbjct: 96 SAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG 153
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIK 140
L YA P +LSGG + RV LA N+PDIL++DE + LD E D L E
Sbjct: 154 LEGYADKYP-NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 141 NYQGGVILVSHD 152
+ ++ ++HD
Sbjct: 213 KLKKTIVFITHD 224
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 59.7 bits (145), Expect = 3e-11
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+ R L G P LSGG+K RVA+A PD+L+LDEPT LD +
Sbjct: 106 RRVREALTAVGASGLRER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164
Query: 134 ALAEAIKNY--QG-GVILVSHDERLI 156
+ ++ +G V++ +HD L
Sbjct: 165 QMLAILRRLRAEGMTVVISTHDVDLA 190
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 60.3 bits (147), Expect = 3e-11
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHD 152
LSGGQ+ R+ LA N P++L+LDEPT+ LD S + E I + +++V+H+
Sbjct: 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 59.5 bits (145), Expect = 4e-11
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQ 79
+LT +K + + R ++G Q +LFP T E + K+ + E++
Sbjct: 63 KLTDDKKNINEL-RQKVGMVFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL A P LSGGQ+ RVA+A NP +++ DEPT+ LD E + + + +
Sbjct: 120 LEKVGLADKADAYP-AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 140 KNY-QGG--VILVSHDERLIRE 158
K+ + G +++V+H+ RE
Sbjct: 179 KDLAEEGMTMVVVTHEMGFARE 200
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 60.0 bits (146), Expect = 4e-11
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----------KLFNLPYEKSRRQ- 79
ELRK R IG Q L P + E ++ LF L ++ + Q
Sbjct: 72 KGKELRKL-RRDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA 128
Query: 80 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----I 132
L G+ A+ LSGGQ+ RVA+A + P I++ DEP +LD ES +
Sbjct: 129 LDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 133 DALAEAIKNYQGGVILVSHDERLIRE 158
D L + + VI+ H L ++
Sbjct: 188 DILKDINQEDGITVIVNLHQVDLAKK 213
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 59.4 bits (145), Expect = 5e-11
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E++ L + GL + + P LSGG + RVALA +PD+L+LDEP + LD E
Sbjct: 110 ERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 131 SI-DALAEAIKNYQGGVILVSHD 152
+ + L + + V+LV+HD
Sbjct: 169 QLQEELLDIWRETGKTVLLVTHD 191
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 60.4 bits (147), Expect = 5e-11
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL +A P LSGGQ+ RVALA + P +L+LDEP + LD + + + + +
Sbjct: 121 LELVGLEGFADRKP-HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL 179
Query: 140 KNYQG----GVILVSHD 152
K Q + V+HD
Sbjct: 180 KELQRELGITFVYVTHD 196
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 59.9 bits (146), Expect = 6e-11
Identities = 51/184 (27%), Positives = 72/184 (39%), Gaps = 31/184 (16%)
Query: 27 GELTPNKGELR--------------KSPRLRIGKFDQHSGEHLFPDDTPCE----YLMKL 68
G L P+KGE+ R R+G Q LF T E L +
Sbjct: 56 GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA--LFSSLTVFENVAFPLREH 113
Query: 69 FNLPYEKSRRQ----LGMFGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
LP R L + GL + A P +LSGG + RVALA +P++L LDEP
Sbjct: 114 TKLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 124 TNNLDIESIDALAEAIKNYQ----GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179
T+ LD S + E I+ VI+V+HD + + L + G +
Sbjct: 173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV-IAEGTPE 231
Query: 180 DYRE 183
+
Sbjct: 232 ELLA 235
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 60.4 bits (147), Expect = 7e-11
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--YQGGVILVSHD 152
R LSGG++ R+A A L L+ P + LDE T+ LD E+ D L + +K VI V H
Sbjct: 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
Query: 153 ERLIR 157
L
Sbjct: 574 PTLWN 578
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 60.1 bits (146), Expect = 8e-11
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 55 LFPDDTPCEYLM-----KLFNLPYEKSRRQ-----LGMFGLPSYAHTI-----PIRDLSG 99
P T E+LM ++ +K +R+ L GL A+T ++ LSG
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSG 169
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSH 151
G++ R+A A L +P +L DEPT+ LD ++ + +K Q G +I H
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 59.1 bits (144), Expect = 9e-11
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A L NP IL+LDE T+ LD ES + EA+ G I+++H R
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH--R 197
Query: 155 L--IRETDC 161
L IR D
Sbjct: 198 LSTIRNADL 206
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 57.5 bits (140), Expect = 1e-10
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155
LSGG++ R+A A L L+ P + LDE T+ LD ES D L + +K VI V H L
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSL 150
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 59.2 bits (144), Expect = 2e-10
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 141
GL A P LSGGQK RVA+A NNP IL+ DE T+ LD E+ ++ E +K N
Sbjct: 130 GLSDKADRYP-AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188
Query: 142 YQGG--VILVSHDERLIRE 158
+ G ++L++H+ +++
Sbjct: 189 RELGLTIVLITHEMEVVKR 207
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 57.3 bits (139), Expect = 3e-10
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 152
LSGG+K RVALA P++L+LDEP + LD + L + KN VI V+HD
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 57.6 bits (140), Expect = 3e-10
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFG 84
+ ELRK+ R RIG QH +L T E +++ +P E+ L + G
Sbjct: 73 SGKELRKA-RRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG 129
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NY 142
L A P LSGGQK RV +A NNP +L+ DE T+ LD E+ ++ ++ N
Sbjct: 130 LEDKADAYP-AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 143 QGG--VILVSHDERLIRE 158
+ G ++L++H+ +++
Sbjct: 189 ELGLTIVLITHEMEVVKR 206
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 57.1 bits (138), Expect = 3e-10
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL + P+ LS GQ+ RVALA L L+ + ILDEPT LD + AEA+
Sbjct: 110 LARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
Query: 140 KNY--QGG-VILVSH-----DERLIRETD 160
+ +GG V+L +H E RE D
Sbjct: 169 AGHCARGGMVVLTTHQDLGLSEAGARELD 197
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 57.3 bits (139), Expect = 3e-10
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 16 LRNPLSFIKP-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL 71
+R L I P GE+ + L + R RIG + G L+P + YL +L L
Sbjct: 43 IRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKGL 100
Query: 72 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
E++RR+ L L YA+ + +LS G + +V +++P++LILDEP + L
Sbjct: 101 KKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159
Query: 128 DIESIDALAEAIKNYQGG---VILVSH 151
D +++ L + I+ VIL +H
Sbjct: 160 DPVNVELLKDVIRELARAGKTVILSTH 186
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 57.5 bits (139), Expect = 3e-10
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 54 HLFPDDTPCEYL-MKLF------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106
HL PD T E + M L ++ L GL A+ P +LSGG++ RVA
Sbjct: 97 HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-SELSGGERQRVA 155
Query: 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGV--ILVSHDERL 155
+A +NNP +++ DEPT NLD + D++ + + N G ++V+HD +L
Sbjct: 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 57.2 bits (139), Expect = 3e-10
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E+ L + L YA+ P LSGGQ+ RVA+A +N P +L+LDEP LD++
Sbjct: 109 ERVAEALDLVQLEGYANRKP-SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 134 ALAEAIKNYQGGV----ILVSHDE 153
+ +K Q + + V+HD+
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQ 191
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 56.7 bits (138), Expect = 4e-10
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL + +P+R LS GQ+ RVALA L L + ILDEP +D + + L +
Sbjct: 114 LAQVGLAGFED-VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
Query: 140 KNY--QGG-VILVSH 151
+ QGG VIL +H
Sbjct: 173 AQHAEQGGMVILTTH 187
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 57.9 bits (140), Expect = 4e-10
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSR----RQLGMFGLPSYAHTIPI 94
R RIG Q LF D E + K F + ++ + R L G +
Sbjct: 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ----GGVILVS 150
+SGGQ ++A+ + NPDI++LDEPT LD +S + +K+ Q +ILVS
Sbjct: 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203
Query: 151 HD 152
HD
Sbjct: 204 HD 205
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 57.1 bits (138), Expect = 4e-10
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 75 KSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
+SR L GL +P + LSGG++ RVALA PD+L DEPT NLD +
Sbjct: 122 QSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180
Query: 131 SIDALAEAI----KNYQGGVILVSHDERL-------IRETDCELW 164
+ D +A+ + + + +ILV+HD +L +R + +L
Sbjct: 181 TGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 57.2 bits (138), Expect = 4e-10
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 47 FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 98
F Q+ +L+P T E L ++ L +++ + L L YA P+ LS
Sbjct: 88 FQQY---NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LS 143
Query: 99 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVI---LVSHDERL 155
GGQ+ RVA+A + P +L+ DEPT LD E + IK I +V+H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
Query: 156 IRETDCELWALEKKNI 171
R+T + +E +I
Sbjct: 204 ARKTASRVVYMENGHI 219
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 56.5 bits (137), Expect = 5e-10
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
EK + L GL I +LSGG++ RVALA L P +++ DEPT +LD ++ D
Sbjct: 113 EKKKEALEKVGLNLKLKQ-KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 134 ALAEAIK--NYQGG-VILVSHD 152
+ + + N +G +I+V+HD
Sbjct: 172 EVLDLLLELNDEGKTIIIVTHD 193
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 56.4 bits (137), Expect = 5e-10
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 37 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 96
++S R IG Q + L P T E LM +R
Sbjct: 77 KRSFRKIIGYVPQD--DILHPTLTVRETLM-----------------------FAAKLRG 111
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 150
LSGG++ RV++A ++NP +L LDEPT+ LD S + ++ G I+ S
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 57.9 bits (140), Expect = 5e-10
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGGVILVS 150
RDLSGG+K RV LA P + + DEPT LD ++ +AL EA+K ++L S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 151 HDERLIRE-TDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 191
H +I + +D +W LE I++ G D+ + + E
Sbjct: 227 HWPEVIEDLSDKAIW-LENGEIKE-EGTPDEVVAVFMEGVSE 266
Score = 50.2 bits (120), Expect = 2e-07
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 55 LFPDDTPCEYLMKL--FNLPYEKSRRQ----LGMFG---------LPSYAHTIPIRDLSG 99
L+P T + L + LP E +R + L M G L Y LS
Sbjct: 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE-----LSE 430
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERL 155
G++ RVALA++ + P I+ILDEPT +D + + +I + + I+VSHD
Sbjct: 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490
Query: 156 IRE 158
+ +
Sbjct: 491 VLD 493
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 57.8 bits (140), Expect = 6e-10
Identities = 51/166 (30%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 11 AVLQGLRNPLSFIKPKGELTPNKGELRKSP----RLRIGKFDQHSGEHLF---------- 56
A L GL +PL +GE+T + + R R+ Q + HLF
Sbjct: 379 ATLAGLLDPL-----QGEVTLDGVPVSSLDQDEVRRRVSVCAQDA--HLFDTTVRENLRL 431
Query: 57 --PDDTPCEYLMKLFNLPYEKSRRQLGMF--GLPSYAHTIPIRD---LSGGQKARVALAE 109
PD T E L R L + LP T+ LSGG++ R+ALA
Sbjct: 432 ARPDATDEELWAAL-------ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALAR 484
Query: 110 LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
L + IL+LDEPT +LD E+ D L E + G V+L++H
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 56.8 bits (138), Expect = 6e-10
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 54 HLFPDDTPCEYLM----------KLFNLP---------YEKSRRQLGMFGLPSYAHTIPI 94
LFP T E + L P E++R L GL A P
Sbjct: 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-PA 147
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVS 150
+LS GQ+ R+ +A P +L+LDEP L+ E + LAE I+ +GG ++L+
Sbjct: 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE 207
Query: 151 HDERLIRE 158
HD +L+
Sbjct: 208 HDMKLVMG 215
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 57.1 bits (138), Expect = 7e-10
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHD 152
+LSGGQ RVA+A + P+IL LDEP LD E + + K+YQ VILV+H+
Sbjct: 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
Query: 153 ERLIRETDCELWALEKKNIRK 173
+ E ++ LE + K
Sbjct: 205 MDDVAEYADDVLVLEHGKLIK 225
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 56.2 bits (136), Expect = 1e-09
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 72 PYEKSRR-----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
P E R L + L A P LSGGQ+ RVALA P +L+LDEP
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 127 LDI----ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173
LD E L + + V+HD+ E + L + I +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 55.7 bits (135), Expect = 1e-09
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG+K RVA+A L NP IL+LDE T+ LD + + A+++ G I+++H
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS 197
Query: 155 LIRETD 160
I D
Sbjct: 198 TIVNAD 203
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 54.4 bits (132), Expect = 1e-09
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILVSH 151
LS G++ V +A N +LILDEPT L ++ L + I+ QG VI +SH
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 55.7 bits (135), Expect = 2e-09
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 42 LRIGKFDQHSGEHLFPDDTP-CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 100
LR + + P+ + +L L E R + SGG
Sbjct: 102 LRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE-------------GFSGG 148
Query: 101 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDERL 155
+K R + +L L P + ILDEP + LDI+++ +AE I + GV++++H +RL
Sbjct: 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 55.3 bits (134), Expect = 2e-09
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
I LSGG + RV +A+ + +P ILI+DEPT LD E
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 56.0 bits (136), Expect = 2e-09
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 34/153 (22%)
Query: 27 GELTPNKGELR--------KSP----RLRIGKFDQHSGEHLFPDDTPCEYLM------KL 68
G P+ GE+R KSP RL IG QH L P T E ++ K
Sbjct: 52 GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKG 109
Query: 69 FNLPYEKSR-------RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
+ ++R + G+ + A + DLS G++ RV + + +LILD
Sbjct: 110 GLIDRRQARARIKELSERYGLP-VDPDAK---VADLSVGEQQRVEILKALYRGARLLILD 165
Query: 122 EPTNNLDIESIDALAEAIKNY--QG-GVILVSH 151
EPT L + D L E ++ +G +I ++H
Sbjct: 166 EPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
Score = 47.9 bits (115), Expect = 1e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 93 PIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVIL 148
P R LSGG + ++ LA EL PD+LI +PT LD+ +I+ + E + ++ V+L
Sbjct: 400 PARSLSGGNQQKLILARELARR-PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL 458
Query: 149 VSHD 152
+S D
Sbjct: 459 ISED 462
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 54.7 bits (132), Expect = 2e-09
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 150
+ S G + +VA+A +++P +L+LDEPT LD+ + AL E I+ G IL S
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 55.1 bits (133), Expect = 2e-09
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 16 LRNPLSFIKP-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74
LR + + P G++T + + + P K GE +K F
Sbjct: 45 LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG 104
Query: 75 KSRRQLG--------MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
SR+++ L Y + + S G K +VA+A +++P IL+LDEPT+
Sbjct: 105 LSRKEIKARIAELSKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163
Query: 127 LDIESIDALAEAI---KNYQGGVILVSHD 152
LDI + + I KN VI SH
Sbjct: 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 55.7 bits (135), Expect = 3e-09
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 65 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124
L++L +P E +R L +Y H +LSGGQ+ RV +A N PD+LI DEPT
Sbjct: 138 LLELVGIP-EPEKR------LDAYPH-----ELSGGQRQRVMIAMALANEPDLLIADEPT 185
Query: 125 NNLD----IESIDALAEAIKNYQGGVILVSHDERLIRE 158
LD + +D L E ++ ++HD ++R+
Sbjct: 186 TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDE 153
SGGQ+ R+A+A + P++++LDEPT+ LD + +D L + + + + +SHD
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 154 RLIR 157
++R
Sbjct: 488 AVVR 491
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 54.2 bits (131), Expect = 4e-09
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 76 SRRQ--------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
SR + L GL A +R+L+GG + RV +A L+ P +L+LDEPT L
Sbjct: 105 SRAEARARIAELLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163
Query: 128 DIESIDALAEAIKNYQGGVILVSHDERLIRETD-CELWA 165
D S A + +H L R+ LWA
Sbjct: 164 DPASRAA-------------ITAHVRALARDQGLSVLWA 189
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 54.1 bits (130), Expect = 4e-09
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L F LP T I +LSGG+K R+AL P IL+LDE T+ LD + + E I
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 140 KNY----QGGVILVSHD 152
Y V+ ++HD
Sbjct: 177 HRYVREQNVAVLWITHD 193
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 54.1 bits (130), Expect = 4e-09
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL Y T+ +R LS GQK R+ALA L L+ + +LDEP NLD+E I + I
Sbjct: 122 LAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
Query: 140 KNY---QGGVILVSH 151
+ G ++ +H
Sbjct: 181 SAHLRGGGAALVTTH 195
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 55.1 bits (133), Expect = 5e-09
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LSGGQK R+A+A + P +LILDE T+ LD E L E+ V+L++H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV 677
Query: 157 RETD 160
D
Sbjct: 678 ERAD 681
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 54.8 bits (132), Expect = 5e-09
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 55 LFPDDTPCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 107
LFP T E + +K+ +P + L + L +A P + LSGGQ+ RVAL
Sbjct: 53 LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVAL 111
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHDER 154
A + P IL+LDEP + LD + D + +K Q + + V+HD+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 53.9 bits (130), Expect = 5e-09
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
LSGG++ RVA+A + NP IL+LDEP + LD+ + + L + K + V+ V+
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 151 HD 152
HD
Sbjct: 188 HD 189
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 54.7 bits (132), Expect = 6e-09
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A + NP ILI DE T+ LD ES + ++ G VI+++H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS 653
Query: 155 LIRETDCELWALEKKNI 171
+R D + LEK I
Sbjct: 654 TVRACD-RIIVLEKGQI 669
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 53.6 bits (129), Expect = 6e-09
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG----GVILVSHD 152
LSGGQK RVA+A + NP +LILDE T+ LD ES + +A+ Y V++++H
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL--YDWPERRTVLVIAHR 208
Query: 153 ERLIRETD 160
+ D
Sbjct: 209 LSTVERAD 216
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 53.7 bits (130), Expect = 7e-09
Identities = 34/85 (40%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVIL 148
P++ S G KAR+A A T PDIL++DE D L E +K VIL
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVIL 197
Query: 149 VSHDERLIRET-DCELWALEKKNIR 172
VSHD I+ D L LEK IR
Sbjct: 198 VSHDPSSIKRLCDRALV-LEKGKIR 221
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 54.4 bits (132), Expect = 7e-09
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
++R L GL T + DLS Q+ V +A + +LILDEPT L ++
Sbjct: 123 RRRARELLARLGLDIDPDT-LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 133 DALAEAIKNY--QG-GVILVSH 151
+ L + I+ QG +I +SH
Sbjct: 182 ERLFDLIRRLKAQGVAIIYISH 203
Score = 48.3 bits (116), Expect = 8e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 93 PIRDLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQ 143
PI LSGG QK V LA +P +LILDEPT +D+ + I LA K
Sbjct: 398 PIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK--- 452
Query: 144 GGVILVS 150
++++S
Sbjct: 453 -AILMIS 458
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 54.4 bits (131), Expect = 8e-09
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 91 TIPIRDLSGGQKA------RVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY 142
PI+ LSGG++ R+AL++L ++L LDEP LD E ++ LAE ++
Sbjct: 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL 869
Query: 143 QGG---VILVSHDERLI 156
+I++SH E L
Sbjct: 870 LSDGRQIIIISHVEELK 886
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 53.9 bits (130), Expect = 9e-09
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
RQ+GM + + P R LSGGQK RVA+A + PDI+ILDE T+ LD + E
Sbjct: 126 RQVGM---EDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE 181
Query: 138 AIK--NYQGG--VILVSHD 152
++ Q G V+ ++HD
Sbjct: 182 TVRQLKEQKGITVLSITHD 200
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 53.9 bits (129), Expect = 9e-09
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 34 GELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLP 86
ELR+ R +I Q L P T + + M+L + E+ R + L GL
Sbjct: 98 AELREVRRKKIAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNY 142
+YAH+ P +LSGG + RV LA NPDIL++DE + LD E D L + +
Sbjct: 156 NYAHSYP-DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 143 QGGVILVSHD 152
Q ++ +SHD
Sbjct: 215 QRTIVFISHD 224
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 53.9 bits (130), Expect = 9e-09
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVIL 148
P+R LS GQ+ R LA L+ P +L LDEPT LD+ + + E +K Y Q V+L
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 149 VSHD 152
+H
Sbjct: 213 TTHI 216
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 53.6 bits (129), Expect = 1e-08
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 71 LPYE--KSRRQ--LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
+P+E K R L + G+ + P R LSGGQK RVA+A P I+ILDE T+
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 127 LDIESIDALAEAIKN----YQGGVILVSHD 152
LD E L + IK YQ VI ++HD
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHD 200
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 53.9 bits (130), Expect = 1e-08
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E+ L + GLP P + LSGGQ+ RVALA +P +L+LDEP + LD +
Sbjct: 113 ERVAELLDLVGLPGSERKYPGQ-LSGGQQQRVALARALATSPGLLLLDEPLSALDARVRE 171
Query: 134 ALAEAIKNYQG--GV--ILVSHDE 153
L I+ Q GV I+V+HD+
Sbjct: 172 HLRTEIRQLQRRLGVTTIMVTHDQ 195
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 53.1 bits (128), Expect = 1e-08
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 64 YLMK-LFNLPYEKSRRQLG----MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118
YL+ +++LP + +++L + L T P+R LS GQ+ R +A L+ P+IL
Sbjct: 117 YLLAAIYDLPPARFKKRLDELSELLDLEELLDT-PVRQLSLGQRMRAEIAAALLHEPEIL 175
Query: 119 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 152
LDEPT LD+ + + + +K Y V+L SH
Sbjct: 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 52.0 bits (125), Expect = 1e-08
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 97 LSGGQKARVALA----ELTLNNPDILILDEPTNNLDIESIDALAEAIK-NYQGG--VILV 149
LSGG+K ALA +L + ILDE LD ALAEAI + G VI++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 150 SHDERLIRETD 160
+H L D
Sbjct: 138 THLPELAELAD 148
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 53.5 bits (129), Expect = 1e-08
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
R LSGG++ R+ALA L++ + +LDEPT LD + + + + G +++V+H
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR 532
Query: 153 ERLIRETD 160
R + D
Sbjct: 533 LRGLERMD 540
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 52.9 bits (127), Expect = 2e-08
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL T +++LSGG+ RV++A NNP++L+LDEPT+ LD S + + E I
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 140 KNYQGG----VILVSHD 152
+ VI ++H+
Sbjct: 175 VKLKNKMNLTVIWITHN 191
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 53.1 bits (128), Expect = 2e-08
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQ------LGMFGLP--SYAHT 91
R +IG Q G LFP T E + + L ++K R + L + GL YA
Sbjct: 74 RRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR 131
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VI 147
P +LSGGQ+ RV +A +P IL++DEP LD + L E IK Q ++
Sbjct: 132 YP-HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190
Query: 148 LVSHDE 153
V+HD
Sbjct: 191 FVTHDI 196
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 53.3 bits (129), Expect = 2e-08
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 93 PIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--V 146
PI D LS GQ R+ALA L +L+LDEPT +LD S + +A+
Sbjct: 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537
Query: 147 ILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDD 180
++V+H +L ++W ++ I + GD+ +
Sbjct: 538 LMVTH--QLEDLAQWDQIWVMQDGQIVQ-QGDYAE 569
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 52.6 bits (127), Expect = 2e-08
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 91 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGV 146
P++ S G AR+A + T PDIL+LDE D ++ L E ++ +
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTI 200
Query: 147 ILVSHDERLIRET-DCELWALEKKNIRKFNGDFDD 180
+LVSHD I++ D +W LE IR G ++
Sbjct: 201 VLVSHDLGAIKQYCDRAIW-LEHGQIR-MEGSPEE 233
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 52.0 bits (125), Expect = 2e-08
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILV 149
+ S G K R+ +A LN+P +LILDEPTN LD I L E I+++ QG VIL
Sbjct: 121 KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180
Query: 150 SH 151
SH
Sbjct: 181 SH 182
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 52.2 bits (125), Expect = 2e-08
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--- 140
GL A PI+ LSGG++ RV +A +N P +L+ DEPT NLD DAL+E I
Sbjct: 126 GLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILRLF 180
Query: 141 ---NYQG-GVILVSHDERLI 156
N G V++ +HD LI
Sbjct: 181 EEFNRVGVTVLMATHDIGLI 200
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 52.5 bits (126), Expect = 2e-08
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L M GL +P LSGG+K RVA+A + P +L+LDEPT LD + + L + +
Sbjct: 122 LHMLGLEELRDRVP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180
Query: 140 ----KNYQGGVILVSHDERLIRETDCELWALEKKNI 171
+ Y VI +H L+ E ++ ++K I
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 52.5 bits (126), Expect = 3e-08
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQLGMF----GLPSYAHTIP 93
R R+G Q ++L PD T E L+ + F L +R + L + A
Sbjct: 79 RQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-K 135
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ +LSGG K R+ LA +N+PD+L+LDEPT LD
Sbjct: 136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 51.9 bits (125), Expect = 3e-08
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 93 PIRDLSGGQKARVALAELTL-----NNPD--ILILDEPTNNLDIESIDALAEAIKNY--Q 143
+ LSGG+ RV LA + L NP +L+LDEP N+LD+ AL + Q
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 144 GGVILVS-HD 152
G +++S HD
Sbjct: 183 GIAVVMSSHD 192
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 51.5 bits (124), Expect = 4e-08
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
+LS G++ +A+A L +P ILILDE T+N+D E+ + EA++ G I+++H
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198
Query: 154 RLIRETD 160
I+ D
Sbjct: 199 STIKNAD 205
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 51.9 bits (124), Expect = 4e-08
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----- 128
E+ L + GL A +P LSGG + R+A+A PD+L+LDEP + LD
Sbjct: 116 ERVADALKLVGLGDAAAHLP-AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174
Query: 129 --IESIDALAEAIKNYQGGVILVSHDE 153
E I AL E + ++ V+HD+
Sbjct: 175 NMREEIAALHEELPELT--ILCVTHDQ 199
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 51.3 bits (123), Expect = 4e-08
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A ++NP ILI DE T+ LD ES A+ + + G VI+++H
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 199 TVKNAD-RIIVMEKGRI 214
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 51.1 bits (123), Expect = 4e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 64 YLMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNN 114
+ LP + S L A T I +SGG++ RV++A L +
Sbjct: 103 TYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWD 161
Query: 115 PDILILDEPTNNLD 128
P +LILDEPT+ LD
Sbjct: 162 PKVLILDEPTSGLD 175
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 51.6 bits (124), Expect = 4e-08
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 129
+ + + L GL A+ P LSGGQK RVALA ++ P +L+LDEP LD I
Sbjct: 112 DAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 130 ESIDALAEAIKNYQGGVILVSHD 152
E D + + + V+LV+HD
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHD 193
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 51.5 bits (124), Expect = 6e-08
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
+ GL + P LSGGQ+ RVALA + P + +LDEP +NLD + + IK
Sbjct: 120 LLGLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178
Query: 142 YQG----GVILVSHD 152
I V+HD
Sbjct: 179 LHERLGTTTIYVTHD 193
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 51.4 bits (123), Expect = 8e-08
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSRRQ----- 79
G + N + K R G Q + L+P T E L+ L LP ++++
Sbjct: 125 GTILANNRKPTKQILKRTGFVTQD--DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVA 182
Query: 80 ---LGMFGLPSYAHTIP----IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ GL +TI IR +SGG++ RV++A L NP +LILDEPT+ LD
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 50.8 bits (122), Expect = 8e-08
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLP--SYAHT 91
R +IG Q G LFP T E + KL P EK R + L + GL +A
Sbjct: 74 RRKIGYVIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADR 131
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ----GGVI 147
P +LSGGQ+ RV +A +P +L++DEP LD + D L E K Q ++
Sbjct: 132 YP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIV 190
Query: 148 LVSHD 152
V+HD
Sbjct: 191 FVTHD 195
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 50.8 bits (122), Expect = 8e-08
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
++ + L G+ + + P LSGGQK RVA+A + P+I++LDEPT+ LD
Sbjct: 116 KRVKEALKAVGMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 134 ALAEAIK--NYQGGVILVS-HDERLI 156
+ + + N +G I++S HD L+
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLV 200
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 50.6 bits (121), Expect = 9e-08
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 26 KGELTPNKGELRKSPR----LRIGKFDQHSGEHLFPDDTPCEYL--MKLFNLPY------ 73
G + +L R R+ +Q S P + L +P+
Sbjct: 55 AGTVDLAGVDLHGLSRRARARRVALVEQDS-----DTAVPLTVRDVVALGRIPHRSLWAG 109
Query: 74 ------EKSRRQLGMFGLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPT 124
R L L A RD LSGG++ RV +A P +L+LDEPT
Sbjct: 110 DSPHDAAVVDRALARTELSHLAD----RDMSTLSGGERQRVHVARALAQEPKLLLLDEPT 165
Query: 125 NNLDIESIDALAEAIKNYQGG---VILVSHD 152
N+LD+ + ++ V+ HD
Sbjct: 166 NHLDVRAQLETLALVRELAATGVTVVAALHD 196
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 50.8 bits (122), Expect = 9e-08
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---- 128
+K+R + + GLP P +LSGGQ RVA+A + P++L+LDEPT LD
Sbjct: 123 QKAREMIELVGLPEELLARSPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGR 181
Query: 129 IESIDALAEAIKNYQGGVILVSH 151
E ++ + K +LV+H
Sbjct: 182 KEMMEMFYKLHKEKGLTTVLVTH 204
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 50.7 bits (122), Expect = 1e-07
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIES 131
E+ L GLP + + P +LSGGQ+ R+ +A L LN P +++ DEP + LD+ S
Sbjct: 87 ERVLELLEKVGLPEEFLYRYP-HELSGGQRQRIGIARALALN-PKLIVADEPVSALDV-S 143
Query: 132 IDA-----LAEAIKNYQGGVILVSHDERLIR 157
+ A L + + + +SHD ++R
Sbjct: 144 VQAQILNLLKDLQEELGLTYLFISHDLSVVR 174
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 50.5 bits (122), Expect = 1e-07
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 97 LSGGQKARV----ALAELTLNNPD--ILILDEPTNNLDI----ESIDALAEAIKNYQGGV 146
LSGG++ RV LA+L + L+LDEPT+ LD+ + + V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 147 ILVSHD 152
I+V HD
Sbjct: 195 IVVLHD 200
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 50.3 bits (121), Expect = 1e-07
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 68 LFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
LF L ++ +++ L GL A+ LSGGQ+ RVA+A + P +++ DEP
Sbjct: 113 LFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 124 TNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 158
+LD S +D L + VI+ H L RE
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 50.8 bits (122), Expect = 1e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
LSGGQ+ R+A+A L + ILILDE T+ LD ES A+ A+ Q
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 50.1 bits (120), Expect = 1e-07
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
L F LP T I +LSGG+K R++L P +L+LDE T+ LD +
Sbjct: 115 AIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 134 ALAEAIKNY----QGGVILVSHDERLIRETD 160
+ E I Y V+ V+HD+ I D
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHAD 205
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 50.7 bits (121), Expect = 2e-07
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQGGVILV 149
LSGG++ R+A+A L N IL+LDE T+ LD+E+ IDAL + + ++
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTF-----II 526
Query: 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184
+H +R D L+ + + I K G F + +K
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEK--GSFQELIQK 559
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 50.8 bits (121), Expect = 2e-07
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 152
LSGGQK R+++A + NP ILILDE T++LD +S + + I N +G I+++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 153 ERLIR 157
IR
Sbjct: 640 LSTIR 644
Score = 45.0 bits (106), Expect = 1e-05
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVS 150
+ LSGGQK R+A+A L P IL+LDE T++LD S + + I + + +I ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 151 HDERLIRETD 160
H I+ +D
Sbjct: 1417 HRIASIKRSD 1426
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 50.3 bits (121), Expect = 2e-07
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R LSGG++ R+A+A L +P ILILDE T+ LD+E+ AL E +K +I +
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII--A 527
Query: 151 HDERL--IRETD 160
H RL +R D
Sbjct: 528 H--RLSTVRNAD 537
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 49.7 bits (119), Expect = 2e-07
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 69 FNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124
+PY++ R+ L + A P LSGGQK RVA+A + NP ++ILDE T
Sbjct: 112 HAVPYDEMHRRVSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEAT 170
Query: 125 NNLDIESIDALAEAIKNYQGG----VILVSHD 152
+ LD ++ L + ++ + +I ++HD
Sbjct: 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 49.8 bits (119), Expect = 2e-07
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
+ ++ L GL SY P LSGGQK RVA+A + P+ILI DEPT LD +
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 133 DALAEAI---KNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173
+ + I K V +++H + E E+ ++K I K
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 49.4 bits (118), Expect = 2e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGG--VILVSH 151
+LSGGQ RVA+A + P IL+LDEPT LD + L K +Q G ++LV+H
Sbjct: 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 49.9 bits (120), Expect = 2e-07
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
+LSGGQ+ R+ +A + NP ILILDE T+ LD E+ + + ++ I+V+H R
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH--R 671
Query: 155 L--IRETD 160
L IR+ D
Sbjct: 672 LSTIRDCD 679
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 49.0 bits (118), Expect = 3e-07
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNY-QGG--VILVSHD 152
LSGGQK R++LA ++ DI +LD+P + +D + E I ILV+H
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187
Query: 153 ERLIRETD 160
+L+ D
Sbjct: 188 LQLLPHAD 195
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 49.4 bits (118), Expect = 3e-07
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
I LS G + RV LA+ +++P +LILDEPT LD + + IKN
Sbjct: 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 48.8 bits (117), Expect = 3e-07
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDER 154
SGG+K R + ++ L P + ILDE + LDI+++ +AE I + ++++H +R
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205
Query: 155 LIR 157
L+
Sbjct: 206 LLN 208
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 49.1 bits (117), Expect = 3e-07
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 26 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD----DTPCEYLMKLFNLPYEKSRRQ-- 79
G L P + + R +IG Q +LFP D E + + + ++ ++
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM 128
Query: 80 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
L M GL A +P + LSGGQ+ RVA+A P +++ DE T+ LD E + +
Sbjct: 129 ELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 138 AIKN----YQGGVILVSHDERLIRE 158
I+ + ++LV+H+ RE
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFARE 212
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 48.9 bits (117), Expect = 4e-07
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 129
++S +++GM+ +A + LSGGQK RVA+A + P+ +I DEPT LD
Sbjct: 126 DESLKKVGMYEYRRHAPHL----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181
Query: 130 ESIDALAEAIKNYQGGVILVSH 151
E ++ + E K Y +IL++H
Sbjct: 182 EVVNTIKELNKKYGITIILITH 203
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 48.4 bits (116), Expect = 4e-07
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVS 150
+ LSGGQ+ RVAL + P + ++DEP +NLD ++ L + I V+
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188
Query: 151 HDE 153
HD+
Sbjct: 189 HDQ 191
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 48.1 bits (115), Expect = 4e-07
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 97 LSGGQKARVALA-ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIK---NYQGGVILVSH 151
LSGG+ RV LA EL P L ILDEP+ L + I+ L E IK + VIL+ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 152 DERLIRETD 160
+ ++ D
Sbjct: 148 NLDVLSSAD 156
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 48.7 bits (117), Expect = 4e-07
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVS 150
LSGGQ+ R+ +A P++L++DEPT+ LD S + E I K Y +++V+
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYT--IVIVT 205
Query: 151 H 151
H
Sbjct: 206 H 206
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 49.2 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQG- 144
I LSGG + + LA+ L NP ILILDEPT +D+ + I+ L + QG
Sbjct: 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-----QGV 456
Query: 145 GVILVS 150
+I++S
Sbjct: 457 AIIVIS 462
Score = 34.5 bits (80), Expect = 0.027
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-GGV--ILV 149
P+ +L GQ+ V +A+ +LILDEPT +L L + I++ + G+ I +
Sbjct: 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYI 199
Query: 150 SH 151
SH
Sbjct: 200 SH 201
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 48.9 bits (117), Expect = 4e-07
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 47 FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 98
F Q+ +L+P T + L ++ L +++ + L L YA P+ LS
Sbjct: 88 FQQY---NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LS 143
Query: 99 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GV--ILVSHDERL 155
GGQ+ RVA+A + P +L+ DEPT LD E + I+ G+ ++V+H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203
Query: 156 IRETDCELWALEKKNI 171
R+T + +E +I
Sbjct: 204 ARKTASRVVYMENGHI 219
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 48.3 bits (115), Expect = 4e-07
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
GL H P LSGGQ+ARVAL L P L+LDEP + LD+ D + + +
Sbjct: 123 GLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181
Query: 144 GG----VILVSHD 152
+ V+HD
Sbjct: 182 RAAGIPTVQVTHD 194
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 48.6 bits (116), Expect = 4e-07
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE--- 130
E++ + L G+ A P LSGGQ+ RVA+A P++++ DEPT+ LD E
Sbjct: 131 ERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 131 ----SIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 168
+ LAE + +++V+H+ R+ + L +
Sbjct: 190 EVLKVMQDLAEEGRT----MVVVTHEMGFARDVSSHVIFLHQ 227
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 47.7 bits (114), Expect = 5e-07
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R SGG++ R+ALA + L + I++LDEPT LD + + + E +K+ +I ++
Sbjct: 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT--LIWIT 154
Query: 151 H 151
H
Sbjct: 155 H 155
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 49.0 bits (117), Expect = 5e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 75 KSRRQ-----LGMFGLPSYAHTIPI--RDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
K+RRQ L G+P A + + LSGG RV +A P +LI DEPT L
Sbjct: 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184
Query: 128 DI----ESIDALAEAIKNYQGGVILVSHDERLIRE 158
D+ + I+ L E + ++L++HD L+ E
Sbjct: 185 DVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 48.6 bits (116), Expect = 5e-07
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE--- 130
++R L GL + P R LSGGQ+ RVA+A P++++ DEPT+ LD E
Sbjct: 123 ARARELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181
Query: 131 ----SIDALAEAIKNYQGGVILVSHDERLIRE 158
+I LA+ + +++V+H+ R+
Sbjct: 182 EVLNTIRQLAQEKRT----MVIVTHEMSFARD 209
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 48.6 bits (116), Expect = 5e-07
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVIL 148
LSGG+K RVA+ L++P +L++DEP LD E + L + ++
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 149 VSHD 152
VSH
Sbjct: 188 VSHS 191
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 48.3 bits (115), Expect = 6e-07
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 61 PCEYLMKLFNLPYEKSRRQ------LGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLN 113
P +L L ++S ++ L M GL S A +P R LSGGQ R+ +A
Sbjct: 114 PLRHLTSL-----DESEQKARIAELLDMVGLRSEDADKLP-RQLSGGQLQRINIARALAV 167
Query: 114 NPDILILDEPTNNLDI---ESIDALAEAIKNYQGGV--ILVSHDERLIRETDCELWALEK 168
P +++LDE +NLD+ I L ++ G + ++HD RL++ + ++K
Sbjct: 168 KPKLIVLDEAVSNLDMVLQAVILELLRKLQQ-AFGTAYLFITHDLRLVQSFCQRVAVMDK 226
Query: 169 KNI 171
I
Sbjct: 227 GQI 229
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 48.9 bits (117), Expect = 6e-07
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
LSGGQ+ R+A+A L + IL+LDE T+ LD ES + +A+
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 48.9 bits (117), Expect = 6e-07
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN-YQGGVILVSHDE 153
SGGQ+ R+A+A + P ++ILDEPT++LD I AL ++++ +Q + +SHD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 154 RLIR 157
++R
Sbjct: 487 HVVR 490
Score = 43.2 bits (102), Expect = 5e-05
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA-----LAEAIKNYQGGVILVSH 151
LSGG++ RV +A L P++LI DEPT LD+ S+ A L E + G++ ++H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITH 215
Query: 152 DERLIR 157
+ ++R
Sbjct: 216 NLSIVR 221
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 48.6 bits (116), Expect = 7e-07
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 84 GLPSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDAL 135
LP T PI + LSGGQ+ R+A+A L + ILILDE T+ LD ES AL
Sbjct: 454 KLPLGLDT-PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512
Query: 136 AEAIKNYQGGVI 147
++ VI
Sbjct: 513 ERLMQGRTTLVI 524
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 47.8 bits (114), Expect = 8e-07
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149
+ +LSGG+ RVA+A + DI +LDEP+ LD+E ++ I+ + + +V
Sbjct: 113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172
Query: 150 SHD 152
HD
Sbjct: 173 EHD 175
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 48.3 bits (116), Expect = 8e-07
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 8/66 (12%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R LSGG++ R+ +A L++ +L+LDEPT LD E+ ++ LAE +N V++++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKT--VLMIT 531
Query: 151 HDERLI 156
H RL
Sbjct: 532 H--RLT 535
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 48.3 bits (116), Expect = 1e-06
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDALAEAIKNYQGG--VILV 149
I +LSGG+ RVA+A L + D DEPT+ LDI + ++ A I+ G V++V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVV 267
Query: 150 SHD 152
HD
Sbjct: 268 EHD 270
Score = 45.6 bits (109), Expect = 7e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVIL 148
++DLSGG+ RVA+A + D+ +LDEP+ +LD+E A+A+AI+ + ++
Sbjct: 450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509
Query: 149 VSHD 152
V HD
Sbjct: 510 VDHD 513
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 48.0 bits (114), Expect = 1e-06
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 66 MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
++L N P ++ +R+ L + GL + P +LSGGQK RVA+A +NP +L+ D
Sbjct: 107 LELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCD 165
Query: 122 EPTNNLDIESIDALAEAIK--NYQGG--VILVSHDERLIR 157
E T+ LD + ++ E +K N + G ++L++H+ +++
Sbjct: 166 EATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVK 205
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 47.3 bits (113), Expect = 1e-06
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 94 IRDLSGGQKARVALAEL------TLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQG 144
R LSGG++ RV LA + + + L LDEPT+ LDI LA + G
Sbjct: 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGG 192
Query: 145 GVILVSHD 152
V+ V HD
Sbjct: 193 AVLAVLHD 200
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 47.2 bits (112), Expect = 1e-06
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILV 149
P+ +LSGGQ+ RV +A P +L+LDEP LD+ + + L E G +++
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 150 SHD 152
+HD
Sbjct: 170 THD 172
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 47.7 bits (114), Expect = 1e-06
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG+K RVA+A L NP ILILDE T+ LD + A+ A++ G ++++H
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
Query: 155 LIRETD 160
I + D
Sbjct: 460 TIIDAD 465
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 46.4 bits (110), Expect = 1e-06
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSH 151
DLSGG+ RVA+A L N + DEP+ LDIE A AI+ + ++V H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 152 D 152
D
Sbjct: 131 D 131
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 47.5 bits (113), Expect = 2e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ DLSGG K R+ LA +N+P +LILDEPT LD
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 47.8 bits (114), Expect = 2e-06
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+++ L GL P LSGGQ+ RV++A +N +++ DEPT LD S +
Sbjct: 123 LRAQELLQRLGLEDRVEYQP-SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
Query: 134 ALAEAIK--NYQG-GVILVSHD-------ERLIRETDCEL 163
+ + +G VI+V+HD ER+I D E+
Sbjct: 182 EVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-- 131
E++ L +F L A P+ SGG + R+ +A ++ PD+L LDEPT LD +
Sbjct: 103 ERAEELLELFEL-GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161
Query: 132 -IDALAEAIKNYQGGVILVSHD 152
I A+K ++L +H
Sbjct: 162 AIWDYIRALKEEGVTILLTTHY 183
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 47.0 bits (112), Expect = 2e-06
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+ L + + P LS GQK RVA+A + +PD+++LDEP LD +
Sbjct: 117 RRVEEALKAVRMWDFRDKPPYH-LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175
Query: 134 ALAEAIK--NYQGG-VILVSHDERLIRETDCELWA 165
L E + + QG VI+ +HD L E WA
Sbjct: 176 TLMEILDRLHNQGKTVIVATHDVDLAAE-----WA 205
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 47.0 bits (112), Expect = 2e-06
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
K + L M L A P + LSGGQK RVALA P IL+LDEP LD
Sbjct: 116 KVTQLLEMVQLAHLADRYPAQ-LSGGQKQRVALARALAVEPQILLLDEPFGALD 168
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 45.9 bits (110), Expect = 2e-06
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 77 RRQLGMF-GLPSYAHTIPIRDLSGG--QKARVALAELTLNNPDILILDEPTNNLDIESID 133
R++ G+ L + LSGG QK V LA +P +LILDEPT +D+ +
Sbjct: 84 RKREGLVLDLSVAENIALSSLLSGGNQQK--VVLARWLARDPRVLILDEPTRGVDVGAKA 141
Query: 134 ALAEAIKNY--QG-GVILVSHD 152
+ I+ G V+L+S +
Sbjct: 142 EIYRLIRELADAGKAVLLISSE 163
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 46.5 bits (111), Expect = 2e-06
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSH 151
LSGGQ+ R+ +A P++L+LDEPT+ LD + + E I K Y +++V+H
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYT--IVIVTH 201
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 46.9 bits (111), Expect = 2e-06
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 73 YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
Y+K L + LP Y P +LSGGQK RVALA + + + L+LDEPT LD +
Sbjct: 127 YKKVPELLKLVQLPEDYVKRSPF-ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG 185
Query: 132 ----IDALAEAIKNYQGGVILVSHD-ERLIRETD 160
I+ K Y+ +I+V+H+ ++++R D
Sbjct: 186 EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 219
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 46.5 bits (111), Expect = 3e-06
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGG-VI 147
+ DLSGGQ+ R LA + + +++LDEPT LDI E + + E N QG V+
Sbjct: 135 RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL--NTQGKTVV 192
Query: 148 LVSHD 152
V HD
Sbjct: 193 TVLHD 197
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 46.2 bits (110), Expect = 3e-06
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 54 HLFPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARV 105
+LFP T E +M ++ E++ +Q L GL AH P +LSGGQ+ RV
Sbjct: 87 YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-SELSGGQQQRV 145
Query: 106 ALAELTLNNPDILILDEPTNNLDIE 130
A+A P +++ DEPT+ LD E
Sbjct: 146 AIARALAVKPKLMLFDEPTSALDPE 170
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 46.6 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVS 150
LSGG+K RVA+ L P++L++DEP +LD+ E + L ++ VS
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVS 186
Query: 151 H 151
H
Sbjct: 187 H 187
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 46.5 bits (111), Expect = 3e-06
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
L M L +A P LSGGQ+ RVA+A +N P +L+LDE + LD
Sbjct: 129 LRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-----AIKNYQGGVI 147
P LS G++ RV +A + +P++LILDEP LD+ + + L A ++
Sbjct: 168 PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL 227
Query: 148 LVSH 151
V+H
Sbjct: 228 FVTH 231
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 46.4 bits (110), Expect = 3e-06
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
++ L G+ P LS GQK RVA+A + + P +L+LDEPT LD +
Sbjct: 120 KRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 134 ALAEAIKNYQGG----VILVSHD 152
+ + + Q +I+ +HD
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHD 201
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHD 152
LSGGQ RV LA P +LILDE +NLD+ I L + + + + ++HD
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211
Query: 153 ERLIR 157
RL+
Sbjct: 212 LRLVE 216
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 46.2 bits (110), Expect = 3e-06
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVIL 148
I LSGGQ+ ++L TL+ P IL+LDE T LD ++ A+ ++ ++ ++
Sbjct: 145 RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM 204
Query: 149 VSH 151
V+H
Sbjct: 205 VTH 207
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 46.1 bits (109), Expect = 4e-06
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ + LSGG K R+ LA +N+P +LILDEPT LD
Sbjct: 131 VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 45.6 bits (108), Expect = 4e-06
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 22 FIKP-KGELTPN-KGELRKSPRLRIGK--FDQHSGEHLFPDDTPCEYL-------MKLFN 70
FI+P G + N + +P R F +++ LF T + + +KL
Sbjct: 47 FIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNA 103
Query: 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD-- 128
EK G+ Y +P LSGGQ+ RVALA + IL+LDEP + LD
Sbjct: 104 EQQEKVVDAAQQVGIADYLDRLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 129 --IESIDALAEAIKNYQGGVILVSH 151
E + + + Q +++V+H
Sbjct: 163 LREEMLALVKQLCSERQRTLLMVTH 187
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 45.8 bits (108), Expect = 4e-06
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E+ R++G++ P LSGGQ+ R+ +A P +L++DEPT+ +DI +
Sbjct: 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 131 SIDALAEAIKNYQGGVILVSHD 152
+I+ L +KN + +++VSH+
Sbjct: 191 AIEKLITELKN-EIAIVIVSHN 211
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 46.0 bits (109), Expect = 5e-06
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
+PI LSGG + + LA++ L NP +LILDEPT +D+
Sbjct: 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
Score = 37.1 bits (86), Expect = 0.004
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 69 FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+N Y +++ L L + T P+ D GGQ+ V +A+ +LILDEP+++L
Sbjct: 114 YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173
Query: 129 IESIDALAEAIKNYQG-GV--ILVSH 151
+ + L + I++ + GV + +SH
Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISH 199
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 45.5 bits (108), Expect = 5e-06
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESI 132
EK + + GL AH + + LSGG++ R +A L + L+LDEPT+ LDI +
Sbjct: 126 EKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
Query: 133 DALA--EAIKNYQG-GVILVSHD 152
D LA + +G VI V HD
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHD 207
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 45.1 bits (107), Expect = 5e-06
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
++R L +P +P SGG++ RV +A + + IL+LDEPT +LD +
Sbjct: 126 RARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 133 DALAEAIKNY-QGGVILVS--HDE 153
+ E I G L+ HDE
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDE 209
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 45.8 bits (109), Expect = 5e-06
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVIL 148
P+ +LSGG+ RVA+A D+ +LDEP+ LD+E +A+ I+ N + ++
Sbjct: 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511
Query: 149 VSHD 152
V HD
Sbjct: 512 VDHD 515
Score = 44.6 bits (106), Expect = 2e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQGGV 146
+ +LSGG+ RVA+A L + D+ DEP++ LDI I LAE K V
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY----V 266
Query: 147 ILVSHD 152
I+V HD
Sbjct: 267 IVVEHD 272
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 45.9 bits (109), Expect = 6e-06
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQGGV--ILVS 150
+LSGGQKARV+LA N D+ +LD+P + LD E + + E G +L +
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV--VEECFLGALAGKTRVLAT 839
Query: 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAEQDDDEDYE 210
H ++ D + AL + +F+G D+ TSL + AAE +++D +
Sbjct: 840 HQVHVVPRADY-VVALGDGRV-EFSGSSADFMR---TSLYATL------AAELKENKDSK 888
Query: 211 D 211
+
Sbjct: 889 E 889
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 45.6 bits (108), Expect = 6e-06
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136
R L G+ Y + P +LSGGQK RVA+A + P I+ILDE T+ LD + +
Sbjct: 125 RDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183
Query: 137 EAIKNYQG----GVILVSHD 152
+ I+ + VI ++HD
Sbjct: 184 KLIRKLKKKNNLTVISITHD 203
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 45.5 bits (108), Expect = 6e-06
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--IES 131
++ QL + GL +A P +LSGG + RV LA IL++DEP + LD I +
Sbjct: 143 KRVDEQLELVGLAQWADRKP-GELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 132 --IDALAEAIKNYQGGVILVSHD 152
D L E + ++ VSHD
Sbjct: 202 QLQDELLELQSKLKKTIVFVSHD 224
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 45.4 bits (108), Expect = 6e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQK RVA+A + NP+I+I DE T+ LD
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 45.4 bits (107), Expect = 6e-06
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
R L GL Y H P + LSGGQ VALA + P+ LI DE T+ LD +S A+ E
Sbjct: 119 RALAEIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177
Query: 138 AIK 140
IK
Sbjct: 178 RIK 180
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 45.1 bits (107), Expect = 7e-06
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E + + L + GL H LSGG + RV +A P +L+LDEP LD E
Sbjct: 111 EIAHQMLALVGLEGAEHKYIW-QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169
Query: 131 SI-DALAEAIKNYQGGVILVSHD 152
+ + L + + V+L++HD
Sbjct: 170 QMQELLLDLWQETGKQVLLITHD 192
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 45.1 bits (106), Expect = 8e-06
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
+LSGGQ RVA+A + P++L+LDEPT LD ++ + L E+I V+LV+H
Sbjct: 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDYRE 183
+ + ++ LEK +I D ++E
Sbjct: 204 MDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 45.0 bits (107), Expect = 8e-06
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 131
E++ L GL A+ LSGGQ+ RVA+A PD+++ DEP +LD ++
Sbjct: 123 KERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 132 ---IDALAEAIKNYQGGVILVSHDERLIRE 158
+D L K VI+ H L ++
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVDLAKK 211
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 45.3 bits (108), Expect = 8e-06
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134
SGGQ+ R+A+A + +PD+++ DEP + LD+ S+ A
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDV-SVQA 191
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 44.6 bits (106), Expect = 8e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAI 139
GL + +P +LSGGQ+ RVALA + IL+LDEP + LD E + +++
Sbjct: 118 GLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176
Query: 140 KNYQGGVILVSH 151
+ +++V+H
Sbjct: 177 DERKMTLLMVTH 188
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIK 140
L Y LSGG RV +A L P LI DEPT +LD+ + L E +
Sbjct: 119 LKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 141 NYQGGVILVSHDERLIRETDCELWALEKKNI 171
+ G++L++HD ++ E+ ++ I
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRI 204
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 44.5 bits (105), Expect = 1e-05
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 94 IRDLSGGQKARVALAELTLN-----NPD--ILILDEPTNNLDI---ESIDALAEAIKNYQ 143
LSGG+ RV LA + L NP +L+LDEP N+LD+ ++D L A+
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG 182
Query: 144 GGVILVSHD-ERLIRETDCELWALEK 168
+++ SHD +R W L++
Sbjct: 183 LAIVMSSHDLNHTLRHAH-RAWLLKR 207
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 44.4 bits (105), Expect = 1e-05
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + L P LSGGQ+ RVALA P +L+LDEP LD + L +
Sbjct: 115 LELVQLEGLGDRYP-NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173
Query: 140 KNYQGGV----ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183
+ V + V+HD+ E + + I + + Y
Sbjct: 174 RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD--------IESIDALAEAIKNYQGGV 146
+ LSGGQ+ RVA+ + P + +LDEP +NLD IE ++ K +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE----ISRLHKRLGRTM 187
Query: 147 ILVSHDE 153
I V+HD+
Sbjct: 188 IYVTHDQ 194
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LSGG+K R+A+A L + P ILDE T+ + ++ + + + + VSH + L
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642
Query: 157 R 157
+
Sbjct: 643 K 643
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 44.6 bits (106), Expect = 1e-05
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 26/109 (23%)
Query: 49 QHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106
+H+ E D ++LFN+ P S Q I LSGG + +VA
Sbjct: 367 KHADEQQAVSD-----FIRLFNIKTP---SMEQ-------------AIGLLSGGNQQKVA 405
Query: 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSHD 152
+A + P +LILDEPT +D+ + + + I + G +ILVS +
Sbjct: 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 67 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
+L+ +P + R + L GL A + ++ SGG + R+ +A ++ P++L LDE
Sbjct: 99 RLYGVPGAERRERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
Query: 123 PTNNLDIESIDALAEAIK 140
PT LD ++ + E I+
Sbjct: 158 PTIGLDPQTRAHVWEYIE 175
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 44.3 bits (104), Expect = 2e-05
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVS 150
P R LSGGQ+ + LA NP++L+LDEPT+ LD + + + E I++ VI+V+
Sbjct: 161 PFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219
Query: 151 HD 152
H+
Sbjct: 220 HN 221
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 44.0 bits (103), Expect = 2e-05
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 91 TIPIRDLSGGQKARVALAEL---TLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 144
+ I+ +S G K +AL L +L++DEP N L + + L E +K
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243
Query: 145 GVILVSHDERLIR 157
+I +H L+
Sbjct: 244 QLIFTTHSPLLLD 256
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 43.9 bits (104), Expect = 2e-05
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E + + L GL I LSGGQ+ RV +A NP +L+LDEP LD E
Sbjct: 107 EIAHQMLKKVGLEGAEKR-YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE 165
Query: 131 SIDALAEAIKNYQGG-VILVSHD 152
+ L + G V+L++HD
Sbjct: 166 QMQTLLLKLWQETGKQVLLITHD 188
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 44.1 bits (104), Expect = 2e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
LSGGQ+ R+ +A NPD+L++DEPT+ LD S + E I
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 43.9 bits (104), Expect = 2e-05
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHDER 154
SGG+K R + ++ L + ++ ILDE + LDI+++ +AE I + +IL++H +R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
Query: 155 LI 156
L+
Sbjct: 213 LL 214
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGG+K RVA+ L P++L++DEP +LD+
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 43.7 bits (103), Expect = 2e-05
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILV 149
+LSGGQ+ R+ +A P IL++DEPT N+D IE + L E K Y ++LV
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL--LFELKKEYT--IVLV 204
Query: 150 SH 151
+H
Sbjct: 205 TH 206
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.7 bits (103), Expect = 2e-05
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILV 149
P LSGGQ+ R+ +A P++L+ DEPT NLD E+ I++L +K ++LV
Sbjct: 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLV 201
Query: 150 SH 151
+H
Sbjct: 202 TH 203
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 44.3 bits (104), Expect = 2e-05
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 18/75 (24%)
Query: 98 SGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----------KN 141
S GQK R+ALAE N I+ LDEPT NLD E+I++LA A+ +N
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260
Query: 142 YQGGVILVSHDERLI 156
+Q +++++HDE +
Sbjct: 1261 FQ--LLVITHDEDFV 1273
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 43.5 bits (103), Expect = 2e-05
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
K L + L A P LSGGQ+ RVALA P +L+LDEP LD
Sbjct: 115 AKVHELLKLVQLDWLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 43.2 bits (102), Expect = 2e-05
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136
+ + GL A LSGG K RVA+A P +L+LDEP LD + L
Sbjct: 96 EEHIALVGLTEAADK-RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
Query: 137 EAIKN----YQGGVILVSHD 152
E + ++ V++V+HD
Sbjct: 155 EELMQIWEEHRVTVLMVTHD 174
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 43.5 bits (102), Expect = 2e-05
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVILVSHD 152
+LSGGQ+ R+ +A +P+IL+ DEPT+ LD SI+ L +KN + +++V+H+
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN 219
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
+SGGQK R+ALA L + +LILDE T+NLD
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.4 bits (102), Expect = 3e-05
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IE 130
E+S ++ ++ P LSGGQ+ R+ +A P++++LDEPT+ LD +
Sbjct: 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 131 SIDALAEAIKNYQGGVILVSHDERLIRETD 160
I+ L E + VI+ + + IR D
Sbjct: 184 RIEKLLEELSENYTIVIVTHNIGQAIRIAD 213
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 43.5 bits (102), Expect = 3e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 72 PYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
+K R + L G+ +AH + LSGGQ+ RVA+A + +++ DEP +LD
Sbjct: 127 REQKQRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 130 ESIDALAEAIK--NYQGGVILV 149
ES + + ++ N G+ +V
Sbjct: 186 ESARIVMDTLRDINQNDGITVV 207
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 43.5 bits (102), Expect = 3e-05
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILV 149
PI+ LS GQK RVA+A + L+LDEPT LD + I+ QG VI+
Sbjct: 133 PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIIS 192
Query: 150 SHDERLIRETDCELWALEKKNI 171
SHD LI E ++ L + I
Sbjct: 193 SHDIDLIYEISDAVYVLRQGQI 214
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 42.6 bits (101), Expect = 3e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 94 IRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
+R LS Q+ R+ + EL P IL LDEPT+ LD ++ + +K
Sbjct: 106 LRGLSVEQRKRLTIGVELA-AKPSILFLDEPTSGLDSQAAYNIVRFLKK 153
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 43.3 bits (102), Expect = 3e-05
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
LSGGQ+ R+ +A P+IL+LDEPT+ LD ++ + + I+ +G +++V+H+
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 43.1 bits (102), Expect = 3e-05
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL LS GQK + + L +P +L+LDEP + + AE +
Sbjct: 132 LATIGLGDERD-RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 140 KNYQGG--VILVSHDERLIRE 158
K+ G +++V HD +RE
Sbjct: 191 KSLAGKHSILVVEHDMGFVRE 211
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 43.2 bits (102), Expect = 3e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 12/64 (18%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD------IES-IDALAEAIKNYQGGVIL 148
DLSGGQ+ R+ +A +P+++++DEP + LD IE I+ LAE V++
Sbjct: 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYT-----VVI 234
Query: 149 VSHD 152
V+H+
Sbjct: 235 VTHN 238
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 42.9 bits (101), Expect = 3e-05
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVS 150
+LSGG++ RVALA + + + +L+LDEP LD E +D + + + V++V+
Sbjct: 127 GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT 186
Query: 151 H 151
H
Sbjct: 187 H 187
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 43.3 bits (103), Expect = 3e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQK RVA+A +NP +L+ DE T+ LD
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 43.5 bits (103), Expect = 3e-05
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 74 EKSRRQLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 131
E+ RR L + + H R LSGG + +V +A+ +P +LI+DEPT +D+ +
Sbjct: 384 ERYRRALNI----KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
Query: 132 --IDALAEAIKNYQGGVILVSHD 152
I L +I V+ +S D
Sbjct: 440 NDIYQLIRSIAAQNVAVLFISSD 462
Score = 30.8 bits (70), Expect = 0.54
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 112 LNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDERLIRE 158
+ + ILILDEPT +L + L I+ G++ +SH IR+
Sbjct: 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQ 205
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 42.9 bits (102), Expect = 4e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
E L++ F++ R+ LSGG++ RV +A NP L+LDE
Sbjct: 115 EELLEEFHI--THLRKSKASS-------------LSGGERRRVEIARALATNPKFLLLDE 159
Query: 123 PTNNLD---IESIDALAEAIKNYQGGVILVSHDERLIRET 159
P +D ++ I + + +K+ GV++ H+ +RET
Sbjct: 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN---VRET 196
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 43.0 bits (101), Expect = 4e-05
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI- 132
E++ + L G+ A LSGGQ+ RV++A P++L+ DEPT+ LD E +
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 133 ------DALAEAIKNYQGGVILVSHDERLIR 157
LAE K +++V+H+ R
Sbjct: 190 EVLRIMQQLAEEGKT----MVVVTHEMGFAR 216
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RV +A + +P I++LDEPT+ LD
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 42.4 bits (100), Expect = 5e-05
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
K+ L LP ++ SGG++ RV +A + + IL+LDEPT +LD +
Sbjct: 129 RAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188
Query: 133 DALAEAI--KNYQGGVIL-VSHDERLIRETDCE 162
+ E I +G ++ + HDE +RE +
Sbjct: 189 AVVVELIREAKARGAALVGIFHDEE-VREAVAD 220
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 42.1 bits (100), Expect = 5e-05
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 79 QLGMFGLPSYAHTIPIR-----------------DLSGGQKARVALAELTLNNPDILILD 121
G+ LP + IP DLSGGQ+ ++A+A + P +L+LD
Sbjct: 97 LTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156
Query: 122 EPTNNLDIESIDALAEAIK--NYQGG--VILV 149
EPT + I + I+ +GG ++LV
Sbjct: 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV 188
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 42.4 bits (100), Expect = 5e-05
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGGQ+ R+ +A PDIL++DEP + LD S L E + KNY +I+V+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTHN 221
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 42.2 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL--AEAIKNY---QGGVIL 148
+R +SGG++ RV++AE ++ +L D T LD S AL + I+
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD--SSTALEILKCIRTMADVLKTTTF 173
Query: 149 VS 150
VS
Sbjct: 174 VS 175
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 42.9 bits (101), Expect = 6e-05
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 75 KSRRQLGMFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
+++R L +P A TI R LSGG + RV +A P +LI DEPT LD+
Sbjct: 145 EAKRMLDQVRIPE-AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTI 203
Query: 132 IDALAEAIKNYQG----GVILVSHD 152
+ + IK Q GVI ++HD
Sbjct: 204 QAQILQLIKVLQKEMSMGVIFITHD 228
Score = 36.0 bits (83), Expect = 0.010
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIK 140
LP +A P + SGGQ+ R+ +A NP ++I DE + LD+ + I+ L + +
Sbjct: 453 LPEHAWRYP-HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511
Query: 141 NYQGGVILVSHD 152
++ + +SHD
Sbjct: 512 DFGIAYLFISHD 523
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 42.8 bits (101), Expect = 6e-05
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 152
+SGGQ+ RVALA + P +L+ DEP +NLD ++ E I+ Q + V+HD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196
Query: 153 E 153
+
Sbjct: 197 Q 197
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 42.7 bits (101), Expect = 6e-05
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGGVILV 149
LS G+ + L + ++ PD+LILDEP + LD+ S LAE + + +Q G+ LV
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Score = 35.8 bits (83), Expect = 0.011
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
L + G+ P LS GQ+ + + +P +LILDEP LD
Sbjct: 385 LDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 42.3 bits (100), Expect = 6e-05
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 87 SYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAE 137
Y H + D LSGGQ+ R +A + + D ++LDEP NNLD+ + + L
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180
Query: 138 AIKNYQGGVILVSHD 152
+++V HD
Sbjct: 181 LADELGKTIVVVLHD 195
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 42.1 bits (99), Expect = 8e-05
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A PD++++DEPT+ LD S ++ L + +K +Y +I+V+H+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS--IIIVTHN 225
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.9 bits (98), Expect = 9e-05
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ RV +A + PD+++LDEPT+ LD S I+ + +++ Q +ILV+H
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS 206
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A P++L++DEPT+ LD S I+ L + +K +Y +++V+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT--IVIVTHN 204
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 41.6 bits (98), Expect = 1e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI------KNYQGGVI 147
I LSGG+ RVA+A + D DEP++ LDI+ A I NY V+
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY---VL 193
Query: 148 LVSHD 152
+V HD
Sbjct: 194 VVEHD 198
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 41.7 bits (98), Expect = 1e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--------IES 131
LG+ + +A P LSGGQ+ RVALA P +L+LDEP LD +E
Sbjct: 134 LGLVHMQEFAKRKP-HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 132 IDALAEAIKNYQGGV--ILVSHDE 153
+D L GV ++V+HD+
Sbjct: 193 VDILERV------GVTCVMVTHDQ 210
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 41.4 bits (98), Expect = 1e-04
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LS GQK + + L + +P +L+LDEP + E + AE +K+ G V++V HD
Sbjct: 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME 203
Query: 155 LIRETDC 161
+R
Sbjct: 204 FVRSIAD 210
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 41.4 bits (97), Expect = 1e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A NP+++++DEP + LD I+ L E +K VI+V+H+
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY-TVIIVTHN 207
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 42.0 bits (99), Expect = 1e-04
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142
P+ LSGG++ R+AL+ N +LILDEPT LD E L + ++ Y
Sbjct: 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI 844
Query: 143 -QGGVILVSHDERL 155
Q VI+VSHDE L
Sbjct: 845 PQ--VIIVSHDEEL 856
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 41.0 bits (97), Expect = 1e-04
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 62 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
+ L++ F++ R LSGG++ RV +A NP ++LD
Sbjct: 120 LDALLEEFHI--THLRDSKAYS-------------LSGGERRRVEIARALAANPKFILLD 164
Query: 122 EPTNNLD---IESIDALAEAIKNYQGGVILVSHDERLIRET 159
EP +D + I + + +K+ GV++ H+ +RET
Sbjct: 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN---VRET 202
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 41.1 bits (97), Expect = 1e-04
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 151
LSGGQ+ RVALA + IL+LDEP + LD E + +++ + Q +++VSH
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 41.6 bits (98), Expect = 1e-04
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQG 144
H I LSGG + +V + L P+IL+LDEPT +D+ E +AE K +G
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 145 GVILVSHDERLIRETD 160
+I+ S L+ TD
Sbjct: 444 IIIISSEMPELLGITD 459
Score = 29.3 bits (66), Expect = 1.6
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSH 151
LS Q + +A+ N I+I+DEPT++L + ++ L I K G++ +SH
Sbjct: 134 TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
LS GQK +ALA + + P ILILDE T N+D + A+ +A+
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.8 bits (95), Expect = 2e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVS 150
P LSGGQ+ R+ +A P+IL++DEPT+ LD S + + + + + +I+V+
Sbjct: 145 PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204
Query: 151 HD 152
H+
Sbjct: 205 HN 206
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 73 YEKSRRQLGM--FGLPSYAHTIP-------IRDLSGGQKARVALAELTLNNPDILILDEP 123
Y K + M +GL +HT +R +SGG++ RV++AE +L I D
Sbjct: 180 YAKHIADVYMATYGL---SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA 236
Query: 124 TNNLD----IESIDALAE 137
T LD +E I AL
Sbjct: 237 TRGLDSATALEFIRALKT 254
Score = 28.2 bits (63), Expect = 3.9
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 73 YEKSR------RQLGMFGLPSYAHTI---PIRDLSGGQKARVALA-ELTLNNPDILILDE 122
EK + L M SYA + P L+ Q+ R+ + EL +L LDE
Sbjct: 872 SEKMEYVEEVIKLLEM---ESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDE 928
Query: 123 PTNNLDIESIDALAEAIKN 141
PT+ LD ++ ++ + ++
Sbjct: 929 PTSGLDSQTAWSICKLMRK 947
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 40.8 bits (95), Expect = 2e-04
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSHD 152
LSGGQ+ R+ +A P +L+LDEPT+ LD S + E +K ++ +I+V+H+
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 41.0 bits (96), Expect = 2e-04
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 39 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLS 98
+PRLRIG+ L D P + ++F + R +G+ LP +A+ P L+
Sbjct: 101 NPRLRIGQI-LDFPLRLNTDLEPEQRRKQIFE-----TLRMVGL--LPDHANYYP-HMLA 151
Query: 99 GGQKARVALAELTLNNPDILILDEPTNNLD 128
GQK RVALA + P I+I DE +LD
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
P+ LSGG++ RV LA +L+LDEPT +LDI
Sbjct: 136 PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.7 bits (95), Expect = 2e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A PD++++DEPT+ LD S D + E K Y +++V+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIVTHN 205
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 40.8 bits (95), Expect = 2e-04
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
LSGGQ+ R+ +A P+++++DEPT+ LD S + E I N + +I+V+H+
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 41.1 bits (97), Expect = 2e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL- 155
LSGGQ+ R+ +A + P IL+ DE T+ LD + ++E+++ + I+++H RL
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH--RLS 646
Query: 156 -IRETD 160
IR D
Sbjct: 647 TIRNAD 652
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 40.3 bits (95), Expect = 2e-04
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 97 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ---GGVI 147
LSGG+ R+ LA LT +L +LDEP+ L D L E +K + V+
Sbjct: 138 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193
Query: 148 LVSHDERLIRETD 160
+V HDE IR D
Sbjct: 194 VVEHDEDTIRAAD 206
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 40.2 bits (94), Expect = 2e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE--AIKNYQGGVILV-SHDE 153
LS G + VA+A L D+ +LDE NL E+ D L +K GG++L+ SH E
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183
Query: 154 RLIR 157
I+
Sbjct: 184 SSIK 187
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 40.8 bits (95), Expect = 2e-04
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 152
LSGGQK RVA+A + P+I+ILDE T+ LD E + + E + YQ V+ ++HD
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 41.0 bits (96), Expect = 2e-04
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 94 IRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 144
I LSGG+K RVA+A+ N+ +LI+DEPT LD + L + I+
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 145 G---VILVSHDERLIRETD 160
VI++SH L+ D
Sbjct: 859 DIPQVIMISHHRELLSVAD 877
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 40.2 bits (95), Expect = 2e-04
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
LS GQ+ + LA L IL+LDE T ++D E+ + + I+ V+ ++H
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH 196
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 40.4 bits (94), Expect = 2e-04
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-----IKNYQGGVILVS 150
+LSGGQ+ R+ +A N +I+ LD+P + LDI D L + +++ + ++LV+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 151 HDERLIRETDCELWALEKKN 170
H + + D W + K+
Sbjct: 200 HKLQYLPHAD---WIIAMKD 216
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 40.5 bits (95), Expect = 3e-04
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDER 154
SGG+K R + ++ + P++ ILDE + LDI+++ +A+ + + + G I+V+H +R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 155 LI 156
++
Sbjct: 207 IL 208
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 40.5 bits (95), Expect = 3e-04
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA- 134
+R+++ M Y H + SGG + RV +A L P +LI DEPT LD+ ++ A
Sbjct: 151 ARKRMKM-----YPH-----EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQ 199
Query: 135 ----LAEAIKNYQGGVILVSHD 152
L E + + +I+++HD
Sbjct: 200 IMTLLNELKREFNTAIIMITHD 221
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 40.3 bits (94), Expect = 3e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 90 HTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN 141
H +RD LSGG++ RV +A NP ++LDEP +D + I + E +++
Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 142 YQGGVILVSHDERLIRET 159
GV++ H+ +RET
Sbjct: 186 SGLGVLITDHN---VRET 200
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 40.7 bits (96), Expect = 3e-04
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 54 HLFPDDTPCEYLMKLFNLP-----------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQK 102
HL P+ T E L L LP ++R QL G+ T P++ LS GQ+
Sbjct: 89 HLVPEMTVAENLY-LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQR 146
Query: 103 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVIL-VSH 151
V +A+ N ++ DEPT++L I+ L I+ +G VIL VSH
Sbjct: 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198
Score = 35.7 bits (83), Expect = 0.012
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 21/72 (29%)
Query: 93 PIRDLSGG--QKARVA--LAELTLNNPDILILDEPTNNLDI-------ESIDALAEAIKN 141
I +LSGG QKA + L+E + +++LDEPT +D+ I LA
Sbjct: 393 LIMNLSGGNQQKAILGRWLSE----DMKVILLDEPTRGIDVGAKHEIYNVIYELAA---- 444
Query: 142 YQG-GVILVSHD 152
QG V+ VS D
Sbjct: 445 -QGVAVLFVSSD 455
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 40.3 bits (94), Expect = 3e-04
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD- 152
LSGGQ+ R+ +A P +L+LDEP + LD S I+ L +K + +I+V+H+
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM 223
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDY--REKLLTS 188
++ +R +D + L NGD +Y E++ TS
Sbjct: 224 QQALRVSDRTAFFL--------NGDLVEYDQTEQIFTS 253
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 39.9 bits (93), Expect = 3e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDE 153
LS GQK +VAL L ++ + +LDEP LD S+ + I+ ++ G V+L SH +
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187
Query: 154 RLIRETDCELWAL 166
+ + D E + L
Sbjct: 188 LPLNKADYEEYHL 200
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 40.3 bits (94), Expect = 3e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVS 150
I +LSGGQK RV LA +++LDEP +D+++ I +L +++ +G +LVS
Sbjct: 140 IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVS 198
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 40.0 bits (94), Expect = 4e-04
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 68 LFNLP-YEKSRRQ--------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118
L P + ++ + L GL +A+ +L+ GQ+ R+ +A + P+IL
Sbjct: 117 LLKTPAFRRAESEALDRAATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMVTQPEIL 175
Query: 119 ILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLI 156
+LDEP L+ + L E I + V+L+ HD +L+
Sbjct: 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV 217
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 40.5 bits (95), Expect = 4e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 68 LFNLPYEKSR--RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNP 115
LF P++ R R + + L +P DL SGGQK RV++A +N
Sbjct: 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 116 DILILDEPTNNLD 128
D+ I D+P + LD
Sbjct: 760 DVYIFDDPLSALD 772
Score = 28.6 bits (64), Expect = 3.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135
+ S GQ+ ++LA L IL+LDE T +D+ + DAL
Sbjct: 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT-DAL 1412
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 39.8 bits (93), Expect = 4e-04
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R SGG + R+ +A + P ++ +DEPT LD+ +D L +++ VI+V+
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206
Query: 151 HDERLIR 157
HD + R
Sbjct: 207 HDLGVAR 213
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 40.3 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV-----ILVS 150
+LSGGQK RV+LA +N DI + D+P + +D + E + +G + ILV+
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 151 HDERLIRETD 160
H + + D
Sbjct: 820 HGISYLPQVD 829
Score = 34.9 bits (80), Expect = 0.025
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+LS GQ+ V LA L IL+LDE T +D+E+ + + I+
Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 40.3 bits (95), Expect = 4e-04
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 97 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ-GG--VI 147
LSGG+ R+ LA LT +L +LDEP+ L + L E +K + G VI
Sbjct: 482 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537
Query: 148 LVSHDERLIRETD 160
+V HDE IR D
Sbjct: 538 VVEHDEDTIRAAD 550
Score = 32.6 bits (75), Expect = 0.14
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 97 LSGGQKARVALA-ELTL--NNPDILILDEPTNNLDIESIDALAEAIKN--YQGG-VILVS 150
LSGG+ RV LA EL+ + ILDEPT L + I L E + +G VI++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 151 HDERLIRETD 160
H+ +I+ D
Sbjct: 883 HNLDVIKTAD 892
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 39.6 bits (92), Expect = 5e-04
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVILVSHD- 152
LSGGQ+ R+ +A PD+L++DEP + LD ++ L +K Q +I+V+H+
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM 220
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDY---REKLLT-SLGEAMVYNPSVAAEQD 204
++ R D + FN + D+Y R KL+ S E M +P ++
Sbjct: 221 QQASRVADWTAF---------FNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEARE 267
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.8 bits (93), Expect = 5e-04
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
+LSGGQ+ R+ +A P +L++DEP + LD + + + I+ + +I+V+H
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 154 RLIRE 158
+ ++
Sbjct: 209 KQAKK 213
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 39.4 bits (92), Expect = 5e-04
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAI-KNYQGGVILVSH 151
LSGGQ+ R+ +A PD++++DEPT+ LD I+ L E + KNY +++V+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT--IVIVTH 202
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 39.6 bits (93), Expect = 5e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSH 151
LSGGQ+ R+ +A P++L+LDEPT+ LD S I+ L +K+ + +++V+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTH 225
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 39.8 bits (93), Expect = 5e-04
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 92 IPIRD--LSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNY--QGG 145
P RD LS G +ALA L L+ P +L+LDEP +L + + ALAE +++ +
Sbjct: 264 DPFRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ 323
Query: 146 VILVSHDERLIR--ETDCELW 164
VI+ +H RL+ E W
Sbjct: 324 VIVSTHSPRLLNAVEEHSVFW 344
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 39.8 bits (93), Expect = 6e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 93 PIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKN--YQG-GV 146
P+ LSGG+ R+ LA L P + +LDEPT L I AL +++ +QG V
Sbjct: 806 PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865
Query: 147 ILVSHDERLIRETD 160
+++ H+ +++ D
Sbjct: 866 VIIEHNMHVVKVAD 879
Score = 38.7 bits (90), Expect = 0.002
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALA-----ELTLNNPDILILDEPTNNLDIESIDALAEA 138
GLP + LSGG++ R ALA EL ILDEP+ L + L
Sbjct: 464 GLPYLTPERALATLSGGEQERTALAKHLGAELI---GITYILDEPSIGLHPQDTHKLINV 520
Query: 139 IKNY--QGG-VILVSHDERLIRETD 160
IK QG V+LV HDE++I D
Sbjct: 521 IKKLRDQGNTVLLVEHDEQMISLAD 545
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 36.8 bits (86), Expect = 7e-04
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 94 IRDLSGGQKA-------RVALAEL-----TLNNPDILILDEPTNNLDIESIDALAEAIKN 141
LSGG+K ALA P ++ LDE LD E+I +L E ++
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 39.6 bits (92), Expect = 7e-04
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 68 LFNLPYEKSR--RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNP 115
LF +E R R + + L +P RDL SGGQK RV++A +N
Sbjct: 700 LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 116 DILILDEPTNNLD 128
DI I D+P + LD
Sbjct: 760 DIYIFDDPLSALD 772
Score = 30.7 bits (69), Expect = 0.70
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
+ S GQ+ ++LA L IL+LDE T ++D+ D+L +
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVR-TDSLIQ 1411
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.8 bits (90), Expect = 8e-04
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGGQ+ R+ +A +P +L++DEP + LD S + E I K+Y +++V+H+
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYT--IVIVTHN 204
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 38.1 bits (88), Expect = 8e-04
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
SG + R+ALA PD+LILDE T+ LD E L + ++ +
Sbjct: 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
Query: 155 LI 156
+I
Sbjct: 119 VI 120
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 39.1 bits (91), Expect = 9e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 39.5 bits (92), Expect = 9e-04
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 33/122 (27%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQ 79
GEL P++G+++ HSG F T ++M +F L Y++ R
Sbjct: 474 GELEPSEGKIK------------HSGRISFSPQTS--WIMPGTIKDNIIFGLSYDEYRYT 519
Query: 80 --LGMFGLPSYAHTIPIRD----------LSGGQKARVALAELTLNNPDILILDEPTNNL 127
+ L P +D LSGGQ+AR++LA + D+ +LD P +L
Sbjct: 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579
Query: 128 DI 129
D+
Sbjct: 580 DV 581
Score = 34.1 bits (78), Expect = 0.045
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LS G K + LA L+ IL+LDEP+ +LD ++ + + +K ++ + R+
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413
Query: 157 RETDCE-LWALEKKNIRKFNGDFDDYREKLLT 187
+C+ +E +++++ D +KLL
Sbjct: 1414 ALLECQQFLVIEGSSVKQY-----DSIQKLLN 1440
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 38.8 bits (90), Expect = 0.001
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVS 150
P LSGGQ+ R+ +A P I++ DEPT+ LD S + + I N + +++V+
Sbjct: 151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT 210
Query: 151 HD 152
H+
Sbjct: 211 HN 212
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
R+LSGGQ+ RVA+ + P + + DEP +NLD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 38.6 bits (90), Expect = 0.001
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHD 152
LSGGQ+ R+ +A P+++++DEP + LD S + E + Q +I+V+H+
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 38.6 bits (90), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R SGG + R+ +A + P ++ +DEPT LD+ +D L ++ V++V+
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 151 HDERLIR 157
HD + R
Sbjct: 210 HDLAVAR 216
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.5 bits (89), Expect = 0.001
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHDE 153
LSGGQ+ R+ +A + P+++++DEP + LD S I+ L + +K I+ + +
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207
Query: 154 RLIRETD 160
+ R +D
Sbjct: 208 QAARASD 214
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 38.2 bits (90), Expect = 0.001
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQG-GVILVSHD 152
LSGG++ +A+A ++ P +L+LDEP+ L + ++ + EAI+ +G ++LV +
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191
Query: 153 ERLIRE 158
R E
Sbjct: 192 ARFALE 197
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 38.5 bits (89), Expect = 0.001
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILVS 150
LSGGQ+ R+ +A P++L+LDEP + LD +E + + E K+Y + LV+
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL--MVELKKDYT--IALVT 205
Query: 151 HD-ERLIRETD 160
H+ ++ IR D
Sbjct: 206 HNMQQAIRVAD 216
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 38.3 bits (89), Expect = 0.002
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILVS 150
LSGGQ+ R+ +A +P+++++DEP + LD IE D + E + Y V++V+
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE--DLIEELAEEYT--VVVVT 256
Query: 151 HD 152
H+
Sbjct: 257 HN 258
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
+LSGGQ+ R+ +A P+++++DEP + LD S I+ L E +K + +I+V+H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 38.2 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGGQ+ R+ +A P+++++DEP + LD S + E + KN+ +++V+H+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFT--IVIVTHN 212
Query: 153 -ERLIRETD 160
++ +R +D
Sbjct: 213 MQQAVRVSD 221
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 38.1 bits (89), Expect = 0.002
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A P++L+LDEP + LD S I+ L +K +Y V++V+H+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYT--VVIVTHN 214
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 37.8 bits (88), Expect = 0.002
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 96 DLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILV 149
++SGG Q+ +ALA L +I DEPT +LD+ + +D L ++ G++LV
Sbjct: 140 EMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197
Query: 150 SHD 152
+HD
Sbjct: 198 THD 200
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 37.9 bits (88), Expect = 0.002
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 89 AHTIPIRD---LSGGQKARV----ALAEL-----TLNNPDILILDEPTNNLDIESIDALA 136
A + RD LSGG+ ARV LA+L P L+LDEPT LD+ L
Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194
Query: 137 EAI----KNYQGGVILVSHDERL 155
+ + +++ GV+ + HD L
Sbjct: 195 DTVRRLARDWNLGVLAIVHDPNL 217
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.4 bits (87), Expect = 0.002
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A PD+L++DEP + LD S I+ L +K +++V+H+
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN 206
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 37.8 bits (87), Expect = 0.003
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSH 151
LSGGQ+ R+ +A P++L++DEPT+ LD + + E I K Y +I+V+H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS--IIIVTH 282
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 37.3 bits (86), Expect = 0.003
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--YQGGVILVSHD 152
SGGQ+ R+ +A P +++LDEPT+ LD S + E + +Q I+V+H+
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 37.1 bits (87), Expect = 0.003
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVSH 151
LSGG++ +A+A ++ P +L+LDEP+ L + ++ + EAIK +GG ++LV
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ 195
Query: 152 DERLIRE 158
+ R E
Sbjct: 196 NARFALE 202
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 37.1 bits (86), Expect = 0.004
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 141
GL A +P +LSGG R ALA PD+++ DEP D ++ L + I N
Sbjct: 132 GLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELN 190
Query: 142 YQGGV--ILVSHD 152
GV ++VSHD
Sbjct: 191 SALGVTCVVVSHD 203
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 36.5 bits (85), Expect = 0.005
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 93 PIRDLSGGQKARV------ALAELTLNNP----DILILDEPTNNLDIESIDALAEAIKNY 142
P+ LSGG+ AL+E+ N + L +DE LD E+++A+A A++
Sbjct: 120 PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179
Query: 143 QGG---VILVSHDERL 155
+ V ++SH E L
Sbjct: 180 RTENRMVGVISHVEEL 195
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 37.1 bits (86), Expect = 0.005
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID---ALAEAIKNYQGGVILVSHD 152
+LS K + +A+ + + ++I+DEPT++L + +D + ++ ++ +SH
Sbjct: 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204
Query: 153 ERLIRE 158
IR
Sbjct: 205 LAEIRR 210
Score = 35.1 bits (81), Expect = 0.020
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
I +LSGG + +V +++ P+++I DEPT +D+
Sbjct: 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDV 442
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 36.8 bits (85), Expect = 0.005
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LS G K + LA L+ IL+LDEP+ +LD + + + +K ++ + R+
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 157 RETDCE-LWALEKKNIRKFN 175
+C+ +E+ +R+++
Sbjct: 199 AMLECQRFLVIEENKVRQYD 218
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 36.6 bits (85), Expect = 0.005
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----- 128
E S R+ G++ P LSGGQ+ R+ +A +P+++++DEP + LD
Sbjct: 141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATA 200
Query: 129 -IES-IDALAEAIKNYQGGVILVSH 151
+E ID L + NY +++V+H
Sbjct: 201 KVEELIDELRQ---NYT--IVIVTH 220
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 36.7 bits (85), Expect = 0.006
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDA------LAEAIKNYQGGVILVSHDE 153
QK +A+A N P +LI DEPTN +E L+ +N ++L+SHD
Sbjct: 164 CQKVMIAIA--LANQPRLLIADEPTN--SMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219
Query: 154 RLIRE 158
++I +
Sbjct: 220 QMISQ 224
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 36.3 bits (84), Expect = 0.007
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVIL 148
P++ S G +A++ + NPDIL++DE + D + +D + E K +
Sbjct: 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE-FKEQNKTIFF 198
Query: 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDD 180
VSH+ +R+ ++ +E ++ + G+ DD
Sbjct: 199 VSHNLGQVRQFCTKIAWIEGGKLKDY-GELDD 229
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 36.2 bits (83), Expect = 0.007
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSH 151
DLSGGQ+ R+ +A P +L++DEP LD + + I++ + +++VSH
Sbjct: 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
Query: 152 D 152
+
Sbjct: 210 N 210
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 36.5 bits (84), Expect = 0.007
Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
+DLSGG + ++++A + + +++LDEPT+ +D S ++ + + Y+ G +I+ +H
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Score = 31.1 bits (70), Expect = 0.48
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142
GL YA + SGG K +++ A + P +++LDEPT +D ++ L I +
Sbjct: 2058 LGLSLYADRLA-GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116
Query: 143 ---QGGVILVSH 151
V+L SH
Sbjct: 2117 IREGRAVVLTSH 2128
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 36.2 bits (84), Expect = 0.009
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQK R+++A L N +ILILD+ + +D
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVD 483
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 36.1 bits (84), Expect = 0.009
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 93 PIRDLSGGQKARVALA-----ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---G 144
LSGG+ R+ LA LT + +LDEP+ L L +K +
Sbjct: 485 AAGTLSGGEAQRIRLATQIGSGLT---GVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGN 541
Query: 145 GVILVSHDERLIRETD 160
+I+V HDE IR D
Sbjct: 542 TLIVVEHDEDTIRAAD 557
Score = 34.6 bits (80), Expect = 0.029
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 97 LSGGQKARVALA-ELT--LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVS 150
LSGG+ R+ LA EL+ + ILDEPT L + I L E ++ +G V+++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 151 HDERLIRETDC 161
H+ +I+ D
Sbjct: 890 HNLDVIKTADY 900
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.9 bits (83), Expect = 0.009
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A P++L++DEP + LD + I+ L +K Y +I+V+H+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYT--IIIVTHN 207
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 35.7 bits (82), Expect = 0.010
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDAL 135
LSGGQ+ R +A + I++LDEPT LDI ID L
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.7 bits (82), Expect = 0.010
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A +P+++++DEP + LD S I+ L +K +++V+H+
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHN 204
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 35.7 bits (83), Expect = 0.011
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 97 LSGGQKARVALAELTLNNPD----ILILDEPTNNLDIESIDALAEAIKN--YQGG-VILV 149
LSGG+ R+ LA+ L+ + ILDEPT L + L E ++ +G V+++
Sbjct: 170 LSGGEAQRIKLAK-ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228
Query: 150 SHDERLIRETD 160
H+ +I+ D
Sbjct: 229 EHNLDVIKCAD 239
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 35.1 bits (81), Expect = 0.012
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNYQGGVIL-VSHDE 153
+LS GQ+ + LA L P +L+LDE T ++D + + + I + + IL ++H
Sbjct: 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRL 184
Query: 154 RLIRETD 160
R I + D
Sbjct: 185 RTIIDYD 191
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 35.6 bits (82), Expect = 0.013
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA----EAIKNYQGGVIL 148
+LS GQK R LA+L P++L++DE +LD + +A E + +I+
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 149 VSHDERLIR 157
V+H +
Sbjct: 564 VTHRPEVGN 572
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 35.6 bits (82), Expect = 0.017
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
GLP + LS Q+ R+ +A + NP I+ +DEPT+ LD + + ++N
Sbjct: 1013 GLPG------VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064
Score = 32.9 bits (75), Expect = 0.12
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
IR +SGGQK RV E+ + L +DE + LD
Sbjct: 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 35.2 bits (81), Expect = 0.017
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
RQ+G+ LP +A P L+ GQK R+ LA + P ++I DE +LD+
Sbjct: 134 RQVGL--LPDHASYYP-HMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 34.2 bits (78), Expect = 0.029
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHD 152
LSGGQ+ R+ +A P +L++DEP + LD + + E I + + + +V+H+
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 34.2 bits (79), Expect = 0.041
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 118 LILDEPTNNLDIESIDALAEAIKNYQG-GV---ILVSHDERLIRETDCELWALEK 168
LILDEPT LD + L + +++ + GV ++VSHD+ L+ D +L +EK
Sbjct: 815 LILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAAD-DLVRVEK 868
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 32.9 bits (76), Expect = 0.073
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 97 LSGGQKARVALA----ELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVIL 148
SGG+ +R+ LA + LI DE + E A+ + +K ++Q V+
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQ--VLC 228
Query: 149 VSH 151
++H
Sbjct: 229 ITH 231
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 33.2 bits (76), Expect = 0.074
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 151
+L+ G+ +V +A N P +LI DEPTN ++ + L +N ++L+SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 152 DERLI 156
D +++
Sbjct: 218 DLQML 222
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 33.0 bits (76), Expect = 0.10
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDE 122
LS GQK R+AL DIL+LDE
Sbjct: 449 KLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 32.8 bits (75), Expect = 0.11
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 88 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQ 143
Y H + SGGQ R+ +A + P ++I DEP + LD+ SI A L + ++
Sbjct: 158 YPH-----EFSGGQCQRIGIARALILEPKLIICDEPVSALDV-SIQAQVVNLLQQLQREM 211
Query: 144 G-GVILVSHD 152
G +I ++HD
Sbjct: 212 GLSLIFIAHD 221
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 31.4 bits (72), Expect = 0.27
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
SGG + R+ +A + +P ++ +DEPT LD+ +D L ++ V++V+
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 151 HD 152
HD
Sbjct: 210 HD 211
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 31.3 bits (71), Expect = 0.28
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 123 PTNNLDIESIDALAEAIKNYQGGV-ILVSHDERLIRET 159
P + D++++DAL ++ GGV IL+++ R IR
Sbjct: 95 PCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRP 132
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 31.3 bits (71), Expect = 0.34
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSH 151
LS GQK R+AL L DIL+LDE + D E L +K + +SH
Sbjct: 448 KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
Query: 152 DER 154
D+
Sbjct: 508 DDH 510
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 31.6 bits (73), Expect = 0.35
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 97 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 135
LSGG+ RV LA EL TL ILDEPT L E I L
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTL-----YILDEPTTGLHFEDIRKL 872
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 31.0 bits (70), Expect = 0.39
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDE 122
P++ S G K+R+ A NPDIL++DE
Sbjct: 140 PVKTYSSGMKSRLGFAISVHINPDILVIDE 169
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 30.7 bits (70), Expect = 0.43
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 94 IRDLSGGQKARVALAE-LTLNNPD---ILILDEPTNNLDIESIDALAEAIKN 141
++ LSGGQK+ VALA + D + DE LD + A+A IK
Sbjct: 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207
>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl
reductase (PTCR)-like, classical (c) SDRs. PTCR is a
classical SDR which catalyzes the NADPH-dependent
reduction of ketones on steroids and prostaglandins.
Unlike most SDRs, PTCR functions as a monomer. This
subgroup also includes human carbonyl reductase 1 (CBR1)
and CBR3. CBR1 is an NADPH-dependent SDR with broad
substrate specificity and may be responsible for the in
vivo reduction of quinones, prostaglandins, and other
carbonyl-containing compounds. In addition it includes
poppy NADPH-dependent salutaridine reductase which
catalyzes the stereospecific reduction of salutaridine
to 7(S)-salutaridinol in the biosynthesis of morphine,
and Arabidopsis SDR1,a menthone reductase, which
catalyzes the reduction of menthone to neomenthol, a
compound with antimicrobial activity; SDR1 can also
carry out neomenthol oxidation. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering). In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 225
Score = 30.3 bits (69), Expect = 0.55
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 78 RQLGMFGLPSYAHTIPI--RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135
RQL G T+ + RD+ GQ A L L+ LD + SI+A
Sbjct: 18 RQLAKSG----PGTVILTARDVERGQAAVEKLRAEGLS-VRFHQLD--VTDD--ASIEAA 68
Query: 136 AEAIKNYQGGV-ILV 149
A+ ++ GG+ ILV
Sbjct: 69 ADFVEEKYGGLDILV 83
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 30.1 bits (69), Expect = 0.61
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 97 LSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV--ILVS 150
LSGG+KA ALA L + +LDE LD +++ A +K + I+++
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173
Query: 151 HDERLIRETD 160
H + + D
Sbjct: 174 HRKGTMEAAD 183
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 30.0 bits (68), Expect = 0.71
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 96 DLSGGQKARVAL----AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILV 149
+LSGGQ++ VAL A L + ILDE LD+ + IK + G I+V
Sbjct: 166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV 225
Query: 150 SHDE 153
S E
Sbjct: 226 SLKE 229
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 29.5 bits (67), Expect = 0.98
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 93 PIRDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIK-----NYQ 143
+ +LSGG+K ALA L + +LDE LD ++ +A I+ N+Q
Sbjct: 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQ 211
Query: 144 GGVI-----LVSHDERLI---RETDC 161
VI S + L+ R+ +C
Sbjct: 212 FIVISLKEEFFSKADALVGVYRDQEC 237
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 29.5 bits (66), Expect = 1.4
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVILVSH 151
LS GQ+ R+AL L + IL+ DE + D + L +K +I++SH
Sbjct: 470 ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529
Query: 152 DERLIRETD 160
D++ D
Sbjct: 530 DDQYFELAD 538
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 28.9 bits (64), Expect = 2.1
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 73 YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELT---LNNPDILILDEPTN 125
Y + G+F P S A + +K +A LT L +PDI I +N
Sbjct: 272 YRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAI---SSN 328
Query: 126 NLDIESIDALAEAIKNYQGGVIL 148
LDI S+ E IK + GVI+
Sbjct: 329 TLDIASVSNNIEQIKEHIKGVIM 351
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 28.3 bits (63), Expect = 2.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPT 124
+SGG++ +A+ ++ P +L+LDEP+
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPS 165
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 28.6 bits (64), Expect = 2.6
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 95 RDLSGGQKARVALA-ELTLNN-------PDILILDEPTNNLDIESIDALAEAIK--NYQG 144
R LSGG+ V+LA L L++ D L LDE LD E++D +A+ N G
Sbjct: 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASG 1007
Query: 145 GVI-LVSHDE 153
I ++SH E
Sbjct: 1008 KTIGVISHVE 1017
>gnl|CDD|221513 pfam12296, HsbA, Hydrophobic surface binding protein A. This
protein is found in eukaryotes. Proteins in this family
are typically between 171 to 275 amino acids in length.
Although the HsbA amino acid sequence suggests that HsbA
may be hydrophilic, HsbA adsorbed to hydrophobic PBSA
(Polybutylene succinate-co-adipate) surfaces in the
presence of NaCl or CaCl2. When HsbA was adsorbed on the
hydrophobic PBSA surfaces, it promoted PBSA degradation
via the CutL1 polyesterase. CutL1 interacts directly
with HsbA attached to the hydrophobic QCM electrode
surface. These results suggest that when HsbA is
adsorbed onto the PBSA surface, it recruits CutL1, and
that when CutL1 is accumulated on the PBSA surface, it
stimulates PBSA degradation.
Length = 124
Score = 27.6 bits (62), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 125 NNLDIESIDALAEAIKNYQGGVILVSH 151
NN+ +++ AL +I Y GG +
Sbjct: 11 NNIS-DAVTALDTSINAYTGGDLGALP 36
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 27.7 bits (62), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 97 LSGGQKARVALA---ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIK 140
LSGG+K+ ALA L P +LDE LD + +++ IK
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIK 142
>gnl|CDD|164900 PHA02107, PHA02107, hypothetical protein.
Length = 216
Score = 27.7 bits (61), Expect = 4.1
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI---DALAEAIKNYQGGVILVSHD 152
DL G KA V E + EP D ++I +A++ +G S
Sbjct: 126 DLPNGDKAPVKNVETKTEVVSTVDYTEPAKEPDGQNIFFAPETMKAVQLVRGVFHFAS-- 183
Query: 153 ERLIRETDCELWALE 167
I E D E+ L+
Sbjct: 184 -VRISEIDEEIKELQ 197
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 27.8 bits (62), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 16/44 (36%)
Query: 168 KKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAEQDDDEDYED 211
KKN ++F D YRE +P E +D+E+ ED
Sbjct: 118 KKNNKQFEDDITRYRE------------DP----ESEDEEEEED 145
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 27.5 bits (61), Expect = 4.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 135 LAEAIKNYQGGVILVSHDERLIRETDCE 162
AE +K+ L++H ER ++ D E
Sbjct: 73 SAEMLKDIGAKGTLINHSERRMKLADIE 100
>gnl|CDD|131559 TIGR02507, MtrF, tetrahydromethanopterin S-methyltransferase, F
subunit. This small protein (MtrF) is one of eight
subunits of the N5-methyltetrahydromethanopterin:
coenzyme M methyltransferase in methanogenic archaea.
This methyltranferase is membrane-associated enzyme
complex that uses methy-transfer reaction to drive
sodium-ion pump. Archaea domain, have evolved
energy-yielding pathways marked by one-carbon
biochemistry featuring novel cofactors and enzymes. This
transferase is involved in the transfer of 'methyl'
group from N5-methyltetrahydromethanopterin to coenzyme
M. In an accompanying reaction, methane is produced by
two-electron reduction of the methyl moiety in
methyl-coenzyme M by another enzyme methyl-coenzyme M
reductase.
Length = 65
Score = 25.9 bits (57), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 125 NNLDIESIDALAEAIKNYQGGVILVSHDERL 155
DIESI +L EAI Y+ L++ D L
Sbjct: 6 AEPDIESIKSLVEAID-YRVQ--LITRDIGL 33
>gnl|CDD|216243 pfam01012, ETF, Electron transfer flavoprotein domain. This family
includes the homologous domain shared between the alpha
and beta subunits of the electron transfer flavoprotein.
Length = 160
Score = 27.2 bits (61), Expect = 5.2
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 97 LSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESI-DALAEAIKNYQGGVILVSH 151
+ G A A L D L+ D D E+ ALA IK ++L
Sbjct: 38 VVVGPVEAAAEALLAAMGADKVYLVEDPALAGYDPEAYAAALAALIKKEGPDLVLAGA 95
>gnl|CDD|234060 TIGR02919, TIGR02919, accessory Sec system glycosyltransferase
GtfB. Members of this protein family are found only in
Gram-positive bacteria of the Firmicutes lineage,
including several species of Staphylococcus,
Streptococcus, and Lactobacillus [Protein fate, Protein
modification and repair].
Length = 438
Score = 27.3 bits (61), Expect = 6.1
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 114 NPDILILDEPTNNLDIESIDALAEAIKNYQ 143
LIL TN+ IE ++ + +A+ +Y
Sbjct: 282 RKQALIL---TNSDQIEHLEEIVQALPDYH 308
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 27.3 bits (61), Expect = 6.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 166 LEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAEQDDDEDYED 211
+KK++ FN + DD E +LT LG+++ +DDD+ +D
Sbjct: 98 SKKKSM--FNLEDDDEDEFVLTHLGQSLSEIDKDDDVRDDDDFDDD 141
>gnl|CDD|223219 COG0141, HisD, Histidinol dehydrogenase [Amino acid transport and
metabolism].
Length = 425
Score = 27.2 bits (61), Expect = 6.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 117 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCEL 163
+L++ + T N D + D L++A + ILV+ E L + +
Sbjct: 232 VLVIADETANPDFVAADLLSQAEHDPDAQAILVTDSEELAEAVEAAV 278
>gnl|CDD|187860 cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; subunit
of the Cascade complex; signature gene for I-E subtype;
also known as Cse1/CasA/YgcL family.
Length = 465
Score = 27.3 bits (61), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEP 123
IP+R G + ++L EL L +I L P
Sbjct: 9 IPVRRADGRRG-EISLRELLLRAHEIRDLAGP 39
>gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase
family, UDP binding domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 103
Score = 25.6 bits (57), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 126 NLDIESIDALAEAIKNYQGGVILVSHDE 153
+ +D L EA+K VIL HDE
Sbjct: 50 EDGVTLVDDLEEALKGADAIVILTDHDE 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.139 0.408
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,372,691
Number of extensions: 1110285
Number of successful extensions: 1670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1585
Number of HSP's successfully gapped: 430
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)