RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2681
(211 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 151 bits (382), Expect = 2e-42
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 37 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-PSYAHTIPI 94
+ + G+ + + + D F L ++ M GL P I
Sbjct: 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
R LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++GGVI+++H
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 155 LIRETDCELWALEKKNIRKFNGDFD 179
+ E+WA++ + ++
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHNWV 984
Score = 112 bits (281), Expect = 6e-29
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 40 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 99
R + +H + D + +++ + E + +L FG +PI LSG
Sbjct: 493 EECRTV-YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSG 551
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159
G K ++ALA L N DIL+LDEPTN+LD ++ L + I +SHD +
Sbjct: 552 GWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611
Query: 160 DCELWALEKKNIRKFNGDFDDYREK 184
+ E +RK+ G+F ++ +K
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFVKK 636
Score = 57.7 bits (139), Expect = 4e-10
Identities = 33/202 (16%), Positives = 56/202 (27%), Gaps = 29/202 (14%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHL--FPDDTPCEYLMKLFNL--PYEKSRRQLGM 82
GEL P GE+ RI QH+ H+ D TP EY+ F E R
Sbjct: 721 GELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQ 780
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNP----DILILDEPTNNLDIESIDALAEA 138
I + G + + + L + E +
Sbjct: 781 INENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSV 840
Query: 139 IKNYQGGVILVSHDERLIRETD-------CELWALEKKNIRK------FNGDFDDYR--- 182
+ LV +++ E D + L +K I + + + +
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900
Query: 183 -----EKLLTSLGEAMVYNPSV 199
+K+ L P +
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHL 922
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 83.5 bits (207), Expect = 6e-19
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILV 149
+ LSGG+ RVA+A L DEP++ LDI +A I N V++V
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 150 SHD 152
HD
Sbjct: 285 EHD 287
Score = 81.2 bits (201), Expect = 3e-18
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---LGMF 83
G P +G++ L + Q+ + T E L K+ + + + L
Sbjct: 404 GVEEPTEGKVE--WDLTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
G+ DLSGG+ RVA+A L + DI +LDEP+ LD+E A++ AI++
Sbjct: 460 GIIDLYDRNV-EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 144 ----GGVILVSHDERLIRET 159
++V HD +I
Sbjct: 519 EKNEKTALVVEHDVLMIDYV 538
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 78.3 bits (194), Expect = 3e-18
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 27 GELTPNKGELR------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR 77
L P KGE+ + +I + + + +YL L+ + K+
Sbjct: 57 TYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNE 114
Query: 78 --RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135
L + + +LS G RV LA L N +I +LD+P +D +S +
Sbjct: 115 IMDALESVEVLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 136 AEAIKNY---QGGVILVSH 151
++I +G VI+ S
Sbjct: 173 LKSILEILKEKGIVIISSR 191
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 78.1 bits (193), Expect = 4e-17
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
LSGG R+ +A L D+ I D+P++ LD+ +A+AI+ VI+V H
Sbjct: 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195
Query: 152 D 152
D
Sbjct: 196 D 196
Score = 75.8 bits (187), Expect = 3e-16
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 12/141 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGM 82
GE+T ++G + + + Q D T +YL S
Sbjct: 316 GEITADEGSVTP-EKQILSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142
L + DLSGG+ ++ +A D+ +LD+P++ LD+E +A+AIK
Sbjct: 373 LNLHRLLESNV-NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431
Query: 143 Q----GGVILVSHDERLIRET 159
++ HD +
Sbjct: 432 TRERKAVTFIIDHDLSIHDYI 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 77.3 bits (191), Expect = 6e-17
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVS 150
I+ LSGG+ RVA+A L N DEP++ LDI A AI V++V
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 151 HD 152
HD
Sbjct: 216 HD 217
Score = 76.2 bits (188), Expect = 2e-16
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---LGMF 83
G P +G++ L + Q+ + T E L K+ + + L
Sbjct: 334 GVEEPTEGKIE--WDLTVAYKPQYI--KADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAI 139
G+ +LSGG+ RVA+A L + DI +LDEP+ LD+E A+ +
Sbjct: 390 GIIDLYDREV-NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448
Query: 140 KNYQGGVILVSHDERLIRET 159
+ + ++V HD +I
Sbjct: 449 EKNEKTALVVEHDVLMIDYV 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 74.9 bits (185), Expect = 1e-16
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIP 93
R I + +G + + EYL + + + GL
Sbjct: 87 RKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-R 143
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVS 150
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K +++ S
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203
Query: 151 H 151
H
Sbjct: 204 H 204
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 72.8 bits (179), Expect = 8e-16
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
+L L + L L LS GQ V + + P+I+ LD
Sbjct: 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKL-YKLSAGQSVLVRTSLALASQPEIVGLD 153
Query: 122 EPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
EP N+D ++ IK Y ILV+H+
Sbjct: 154 EPFENVDAARRHVISRYIKEYGKEGILVTHE 184
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 72.8 bits (179), Expect = 3e-15
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---LGMF 83
G L P++G+ P+L + Q T + K + + Q +
Sbjct: 400 GALKPDEGQD--IPKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
+ + LSGG+ RVA+ DI ++DEP+ LD E ++ I+ +
Sbjct: 456 RIDDIIDQEV-QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Query: 144 GG----VILVSHDERLIRET 159
+V HD +
Sbjct: 515 LHNKKTAFIVEHDFIMATYL 534
Score = 71.6 bits (176), Expect = 8e-15
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVS 150
I LSGG+ R A+ + D+ + DEP++ LD++ A+ I++ VI V
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 151 HD 152
HD
Sbjct: 279 HD 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 70.7 bits (174), Expect = 4e-15
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 10 IAVLQGLRNPLS-----FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 64
+ +L S F K G++ + +R+ IG E + +
Sbjct: 64 LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ----HIGFVSHSLLEKFQEGERVIDV 119
Query: 65 LM-------KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 113
++ ++ ++ R + L + G+ + A I LS G+K RV +A +
Sbjct: 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMG 178
Query: 114 NPDILILDEPTNNLDIES-------IDALAEAIKNYQGGVILVSHD 152
P +LILDEP LD + +D+L+++ +I V+H
Sbjct: 179 QPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA--MIYVTHF 222
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 68.0 bits (167), Expect = 5e-14
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 69 FNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124
LP ++ R++ L G+ LS GQK RVA+A + + P +LILDEPT
Sbjct: 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 125 NNLDIESIDALAEAIK--NYQGG--VILVSHD 152
LD + + + + + G +I+ +HD
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 64.1 bits (157), Expect = 9e-13
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 69 FNLPYEKSRR---QLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
F + + GL S+ +P LSGG+K RVA+A + ++ PDILILDEP
Sbjct: 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 124 TNNLDIESIDALAEAIKNYQGG---VILVSHD 152
LD E L ++ ++ VIL+SHD
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 64.1 bits (157), Expect = 1e-12
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 66 MKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV----ALAELTLNNPDI 117
+ F P Y+ + + L L A LSGGQ+ + A+A + +
Sbjct: 95 INTFAKPKSHDYQVAMQALDYLNLTHLAKR-EFTSLSGGQRQLILIARAIA----SECKL 149
Query: 118 LILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 152
++LDEPT+ LD + L + ++ V+ +H
Sbjct: 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 63.7 bits (156), Expect = 1e-12
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-------ELTLNNPDILILDEPTNNLDI 129
G L LSGG+ RV LA +L+LDEP N+LD+
Sbjct: 108 NDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
Query: 130 ---ESIDALAEAIKNYQGGVILVSHD 152
++D + A+ +++ SHD
Sbjct: 167 AQQSALDKILSALSQQGLAIVMSSHD 192
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 65.1 bits (159), Expect = 2e-12
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + NP IL+LDE T+ LD ES + A+ + G I+++H R
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH--R 584
Query: 155 L--IRETDC 161
L +R D
Sbjct: 585 LSTVRNADV 593
Score = 60.8 bits (148), Expect = 4e-11
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + P IL+LDE T+ LD ES + EA+ + G I+++H R
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH--R 1229
Query: 155 L--IRETDC 161
L I+ D
Sbjct: 1230 LSTIQNADL 1238
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 63.9 bits (155), Expect = 2e-12
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALA 136
+ P+ LSGG++ + LA +LILDEPT LD E L
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 137 EAIKNYQGG---VILVSHDERLIRETD 160
++ Y VILVSHDE L D
Sbjct: 295 TIMERYLKKIPQVILVSHDEELKDAAD 321
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 61.4 bits (150), Expect = 6e-12
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E+ L GL P +LSGG++ RVA+A N P +L DEPT NLD +
Sbjct: 119 ERGEYLLSELGLGDKLSRKP-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 134 ALAEAIK--NYQGG-VILVSHDERLIRETD 160
+ + N G +++V+H+ L T
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHERELAELTH 207
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 61.0 bits (149), Expect = 1e-11
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH--R 203
Query: 155 L--IRETDC 161
L ++ D
Sbjct: 204 LSTVKNADR 212
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 57.9 bits (141), Expect = 1e-10
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 74 EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
+++ L M L +A+ P LSGGQ+ RVA+A NNP I++ D+PT LD ++
Sbjct: 123 KRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 133 DALAEAIK--NYQGG--VILVSHDERLIRETD 160
+ + + +K N + G V++V+HD + R +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 56.3 bits (136), Expect = 1e-10
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 93 PIRDLSGGQKARVALA-ELTL-----NNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ + LA L + +LILDEPT LD E L ++ Y
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 146 --VILVSHDERLIRETD 160
VILVSHDE L D
Sbjct: 114 PQVILVSHDEELKDAAD 130
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 57.9 bits (141), Expect = 1e-10
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+ R G+ P LSGG++ RVALA + P +L+LDEP + +D+++
Sbjct: 105 RRVREMAEKLGIAHLLDRKP-ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163
Query: 134 ALAEAIKNYQGGV----ILVSHD 152
L E ++ Q + V+HD
Sbjct: 164 VLMEELRFVQREFDVPILHVTHD 186
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 57.5 bits (140), Expect = 2e-10
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
+SGGQ+ R+A+A L NP IL+LDE T +LD ES + AL +K
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 57.5 bits (140), Expect = 2e-10
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ VALA + P +LILD T+ LD + L E+ + V+L++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 153 ERL--IRETD 160
+L
Sbjct: 216 -QLSLAERAH 224
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 58.0 bits (141), Expect = 3e-10
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A L NP IL+LDE T+ LD E+ + EA+ G V++++H R
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH--R 541
Query: 155 L--IRETDC 161
L I+ +
Sbjct: 542 LSTIKNANM 550
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 56.8 bits (138), Expect = 4e-10
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG++ R+A+A L +P I+I DE T++LD ++ +A+++ + +I+++H R
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--R 213
Query: 155 L--IRETDC 161
L I +
Sbjct: 214 LSTISSAES 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 56.4 bits (137), Expect = 8e-10
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + G+ A P +LSGGQ+ R ALA +P++++LDEP + LD + + E +
Sbjct: 123 LELTGISELAGRYP-HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181
Query: 140 KNYQ--GGV--ILVSHD 152
G + VSHD
Sbjct: 182 IAALRANGKSAVFVSHD 198
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 55.3 bits (134), Expect = 2e-09
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG+K RVA+A L P I++LDE T+ LD + A+ ++ I+V+H R
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH--R 248
Query: 155 L--IRETD 160
L + D
Sbjct: 249 LSTVVNAD 256
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 54.9 bits (133), Expect = 2e-09
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
++ + P LSGG++ RVALA + NP IL+LDEP + LD
Sbjct: 106 KRVLDTARDLKIEHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 55.3 bits (134), Expect = 2e-09
Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
LSGGQK R+++A + LNNP ILILDE T+ LD+ES I +AL K+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 55.3 bits (134), Expect = 3e-09
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
LSGGQ+ RVA+A L + +LILDE T+ LD ES I AL E KN
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 54.9 bits (132), Expect = 3e-09
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE-------LTLNNP 115
E + + + + + I +LSGG++ VAL+ L N
Sbjct: 247 EAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRV 306
Query: 116 DILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL 155
+ +ILDEPT LD LAE + + +I+++H L
Sbjct: 307 ECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 54.9 bits (133), Expect = 3e-09
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
LSGGQ+ R+A+A L + ILILDE T+ LD ES I AL E KN
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 54.2 bits (131), Expect = 5e-09
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFG 84
++ EL K+ R +IG QH +L T ++L N P ++ +R+ L + G
Sbjct: 96 SESELTKA-RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE---SIDALAEAIKN 141
L + P +LSGGQK RVA+A +NP +L+ D+ T+ LD SI L + I N
Sbjct: 153 LGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI-N 210
Query: 142 YQGG--VILVSHDERLIRE 158
+ G ++L++H+ +++
Sbjct: 211 RRLGLTILLITHEMDVVKR 229
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 53.0 bits (128), Expect = 1e-08
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ R L L SYA+ P +LSGGQ+ RVALA P +L+ DEP +D
Sbjct: 124 ARVRELLRFMRLESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 52.2 bits (125), Expect = 2e-08
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P R LSGG++A + +LAE+ D +DE ++LD E+ + +A +K +
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN 335
Query: 146 --VILVSHDERL 155
++ ++HD
Sbjct: 336 KVIVFITHDREF 347
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 50.7 bits (122), Expect = 6e-08
Identities = 37/113 (32%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQ 79
L L K R +G Q +LFP T + K+ P K+
Sbjct: 87 NLKAKDTNLNKV-REEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMEL 143
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
L GL AH P LSGGQ RVA+A P I++ DEPT+ LD E +
Sbjct: 144 LDKVGLKDKAHAYPDS-LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 47.5 bits (114), Expect = 7e-07
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
E++ + L G+ A LSGGQ+ RV++A PD+L+ DEPT+ LD E
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 47.5 bits (114), Expect = 7e-07
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT---NNLDIE 130
EK+ + L L +LSGGQ V + + NP ++++DEP
Sbjct: 132 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 131 SIDALAEAIKNYQGGVILVSHDERLI 156
I +K +++ H ++
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIV 216
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 46.5 bits (111), Expect = 2e-06
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
++ + + + P R+LSG Q+ RVALA + +P +L+LDEP +NLD
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 44.3 bits (105), Expect = 9e-06
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135
LS G K + LA L+ IL+LDEP+ +LD + +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQI 193
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 43.3 bits (103), Expect = 2e-05
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVS 150
SGGQK R+++A + P +LILD+ T+++D + + + +K Y G +++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 43.0 bits (102), Expect = 3e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RVA+A + P++L+LDEP +NLD
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 41.9 bits (99), Expect = 6e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGG--VILVSHDE 153
LSGGQ+AR++LA + D+ +LD P LD+ + + + ILV+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 154 RLIRETD 160
+++ D
Sbjct: 220 EHLKKAD 226
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 41.8 bits (99), Expect = 6e-05
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RVALA + P +L+ DEP +NLD
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 41.4 bits (98), Expect = 7e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGG--VILVSHDE 153
LSGGQ+AR++LA + D+ +LD P LD+ + + + ILV+
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 154 RLIRETD 160
+++ D
Sbjct: 191 EHLKKAD 197
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 41.0 bits (97), Expect = 8e-05
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEP 123
LSGGQK RV+LA +N DI + D+P
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDP 154
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 41.8 bits (99), Expect = 9e-05
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 10/37 (27%)
Query: 97 LSGGQK-----ARVALAELTLNNPDILILDEPTNNLD 128
LS GQ+ R LA NP ILILDE T+N+D
Sbjct: 492 LSQGQRQLLAITRAFLA-----NPKILILDEATSNVD 523
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 41.5 bits (98), Expect = 9e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RVA+A + PD+L++DEP +NLD
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 41.1 bits (97), Expect = 1e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
R+LSGGQ+ RVAL + P + ++DEP +NLD
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 38.6 bits (91), Expect = 5e-04
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNYQG---GVILVSH 151
SGG+K R + +L + P +LDE + LD IDAL A + +G G ++++H
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDALKVVARGVNAMRGPNFGALVITH 201
Query: 152 DERLIR 157
+R++
Sbjct: 202 YQRILN 207
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 38.3 bits (90), Expect = 7e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNYQG---GVILVSH 151
SGG+K R + ++ + P++ ILDE + LD IDAL A+ + + + I+V+H
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLD---IDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 152 DERLIR 157
+R++
Sbjct: 223 YQRILD 228
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 37.9 bits (89), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ LSGGQ+ RVA+ + P + +LDEP +NLD
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 34.6 bits (80), Expect = 0.015
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNL-DIESIDALAEAIKNYQGGV-ILV 149
RD++ GQ A L L+ P LD + D++SI AL + ++ GG+ +LV
Sbjct: 37 RDVTRGQAAVQQLQAEGLS-PRFHQLD-----IDDLQSIRALRDFLRKEYGGLDVLV 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 34.3 bits (79), Expect = 0.021
Identities = 11/72 (15%), Positives = 25/72 (34%)
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159
++ AL N I+++D+ + ++ I+ G + S + +
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFA 328
Query: 160 DCELWALEKKNI 171
+E NI
Sbjct: 329 QKHQTNIEDLNI 340
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.065
Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 74/236 (31%)
Query: 18 NPLS----FIKPKGEL-----------TPNKGELRKSPRLRIGKFDQHSGEHLF--PDD- 59
NP++ F KG+ T G+L+ + + ++HS + F
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK--EINEHSTSYTFRSEKGL 1725
Query: 60 ---T----PC---------EYLMKLFNLPYEK-----SRRQLGMFG-LPSYAHTIPIRDL 97
T P E L +P + S LG + L S A + I L
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS---LGEYAALASLADVMSIESL 1782
Query: 98 SG-----GQKARVALA--ELTLNNPDILILDEPTN---NLDIESIDALAEAIK------- 140
G +VA+ EL +N ++ ++ P + E++ + E +
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 141 ---NY--QGGVILVSHDERLIRETDCE-LWALEKKNIR--KFNGDF--DDYREKLL 186
NY + + + D R + +T L ++ + I + ++ L
Sbjct: 1842 EIVNYNVENQQYVAAGDLRAL-DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 31.1 bits (71), Expect = 0.23
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 121 DEPTNNLDIESIDALAEAIKNYQGGVILVSH 151
D +D ++++ +A I N +++ H
Sbjct: 18 DSEEPAIDRDNLERIASEIGNASPSSLMIVH 48
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 30.7 bits (69), Expect = 0.32
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
RD++ G +A L N LD T+ I ++ +LA+ IK + G +
Sbjct: 44 RDVTKGHEAVEKLKNSNHENVVFHQLDV-TD--PIATMSSLADFIKTHFGKL 92
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 30.4 bits (69), Expect = 0.33
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQGGVIL--- 148
R+ + L +L N+ +I IL+ +D+ ++ D L I+ L
Sbjct: 56 RNREQAK----ELEDLAKNHSNIHILE-----IDLRNFDAYDKLVADIEGVTKDQGLNVL 106
Query: 149 -----VSHDERLIRETDCELW 164
++ I +
Sbjct: 107 FNNAGIAPKSARITAVRSQEL 127
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 29.8 bits (66), Expect = 0.52
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 2/97 (2%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
G+ S I + + + P IL L P N E I
Sbjct: 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIR 128
Query: 134 ALAEAIKNYQGGVILVSHDERLI--RETDCELWALEK 168
+ Y+ GV+L S + R+ LW +
Sbjct: 129 EIIRKASMYRMGVLLFSKHPQAGLGRQNLINLWIENR 165
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.1 bits (69), Expect = 0.62
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 97 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 135
LSGG+ R+ LA EL TL ILDEPT L E + L
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTL-----YILDEPTVGLHFEDVRKL 847
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.8 bits (68), Expect = 0.65
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 97 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 135
LSGG+ RV LA EL TL ILDEPT L ++ I L
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTL-----YILDEPTTGLHVDDIARL 585
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.8 bits (68), Expect = 0.71
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 97 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---- 144
LSGG+ R+ LA EL T+ +LDEPT L ++ L +
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTV-----YVLDEPTTGLHPADVERLQRQL---VKLVDA 782
Query: 145 G--VILVSHDERLIRETD 160
G VI V H +++ +D
Sbjct: 783 GNTVIAVEHKMQVVAASD 800
Score = 27.1 bits (61), Expect = 4.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 17/52 (32%)
Query: 119 ILDEPTNNLDIESI-------DALAEAIKNYQG-G--VILVSHDERLIRETD 160
+LDEP S +AL A++N + G + +V HD +IR D
Sbjct: 404 VLDEP-------SAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRAD 448
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.73
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 14/34 (41%)
Query: 167 EKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVA 200
EK+ ++K KL Y A
Sbjct: 18 EKQALKKLQASL-----KL---------YADDSA 37
Score = 26.5 bits (57), Expect = 5.6
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 13/31 (41%)
Query: 33 KGELRK-SPRLRIGKFDQHSGEHLF-PDDTP 61
K L+K L+ L+ D P
Sbjct: 19 KQALKKLQASLK-----------LYADDSAP 38
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 29.7 bits (67), Expect = 0.74
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 168 KKNIRKFNGDFDDYREKLLTSLGE---AMVYNPSVAAEQDDDEDYE 210
K N+ K D GE A+ + + +
Sbjct: 209 KPNVVKTYSKSSDLANMFSN--GEIVAAVASDFAFGTISKAKPEVI 252
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.0 bits (66), Expect = 1.2
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 97 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 135
LSGG+ RV LA EL TL ILDEPT L ++ I L
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTL-----YILDEPTTGLHVDDIARL 887
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.0 bits (66), Expect = 1.2
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 97 LSGGQKARVALA-EL-------TLNNPDILILDEPTNNLDIESIDAL 135
LSGG+ RV LA EL T+ ILDEPT L + I L
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTV-----YILDEPTTGLHFDDIRKL 905
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 28.0 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 97 LSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV--ILVS 150
+SGG+KA ALA + + DE +LD ++ +A+ IK I+++
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124
Query: 151 H 151
Sbjct: 125 L 125
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 28.0 bits (63), Expect = 1.8
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 106 ALAELTLNNPDILILD-EPTNNLDIESIDALAEAIKN 141
L + N+PD+ ++ N+ + ++ A AEA+K
Sbjct: 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.0
Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 51/205 (24%)
Query: 29 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT--PCEYLMKL-FNLPYEKSRR---QLGM 82
L P E RK FD+ S +FP P L + F++ +L
Sbjct: 366 LEPA--EYRKM-------FDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 83 FGL-----PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
+ L +IP L K E L+ I+D +S D +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLE---NEYALHR---SIVDHYNIPKTFDSDDLIPP 467
Query: 138 AIKNYQGGVI---LVSHDERLIRETDCEL---------WALEKKNIRKFNGDFDDYREKL 185
+ Y + H + + L + LE+K IR + + +
Sbjct: 468 YLDQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQK-IRH-DSTAWNASGSI 520
Query: 186 LTSLGEAMVYNPSVAAEQDDDEDYE 210
L +L + Y P + D+D YE
Sbjct: 521 LNTLQQLKFYKPYI---CDNDPKYE 542
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange,
membrane, transport protein; HET: MSE; 1.90A {Vibrio
cholerae} PDB: 3mgl_A*
Length = 130
Score = 27.3 bits (61), Expect = 2.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 113 NNPDILILD-EPTNNLDIESIDALAEAIKNYQ--GGVILVSH 151
P ILIL + +DI I L E I+++ G +L+S
Sbjct: 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISG 88
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 27.8 bits (63), Expect = 2.2
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPT 124
LSGG++ +A+ ++ P +L++DEP+
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPS 167
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain,
anion exchange, membrane, transport protein; HET: MSE;
1.60A {Wolinella succinogenes} PDB: 3oir_A*
Length = 135
Score = 27.3 bits (61), Expect = 2.5
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 113 NNPDILILD-EPTNNLDIESIDALAEAIKNYQ--GGVILVSH 151
P + IL +D + AL E ++ + G ++L+S
Sbjct: 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSG 91
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB),
bicarbonate transport, anion T membrane protein, STAS
domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Length = 118
Score = 26.9 bits (60), Expect = 2.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 113 NNPDILILD-EPTNNLDIESIDALAEAIKNYQGGVILV 149
I+IL + LD +DA +K G L
Sbjct: 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELR 81
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 27.2 bits (61), Expect = 3.4
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
A+ + L+ P+ L N +D ++ L+ I+
Sbjct: 15 AVLRIRLDRPEKL------NAVDTPMLEELSVHIR 43
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
LTLN P N L + AL EA
Sbjct: 37 VTLTLNRPQAF------NALSEAMLAALGEAFG 63
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 27.2 bits (61), Expect = 3.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+A +TL PD L N L E+ L + +
Sbjct: 26 GVATVTLARPDKL------NALTFEAYADLRDLLA 54
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 27.1 bits (61), Expect = 3.8
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 106 ALAELTLNNPDILI-L--DEPTNNLDIESIDALAEAIKN 141
+ + ++ +++ + DEP + I +A+ +
Sbjct: 98 VVEKCAFSDDTVIVNVQGDEP--MIPATIIRQVADNLAQ 134
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 27.3 bits (61), Expect = 3.9
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
LTL + L I AL +A++
Sbjct: 18 LTLTLGRAP-------AHPLSRAMIAALHDALR 43
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 27.1 bits (61), Expect = 4.6
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
LT+N N D + + + +
Sbjct: 15 GLLTMNRISKH------NAFDNQLLTEMRIRLD 41
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein;
polyamine binding, SYPH spermidine, lipoprotein,
transport protein; HET: MES; 1.78A {Treponema pallidum}
Length = 343
Score = 26.9 bits (60), Expect = 4.8
Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 117 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 176
+ ++D+ + + A+ G + + +E+ + + + K N+ KF+
Sbjct: 160 MSMMDDMR--------EVMGAALA-SLGYN-VNTKNEQELAQAAILVTDHWKPNLVKFDS 209
Query: 177 DFDDYREKLLTSLGE---AMVYNPSVAAEQDDDED 208
D Y + + G+ A + + AE +
Sbjct: 210 --DGYAKSFAS--GDFVVAHGFAEAFFAETPEAMH 240
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A
{Pseudomonas aeruginosa} PDB: 3ttk_A
Length = 346
Score = 26.9 bits (60), Expect = 5.0
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 112 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 171
L + LD PT + L A+ Y G + + + ++ + + + +
Sbjct: 150 LKQCGVSFLDSPT--------EILPAALH-YLGYK-PDTDNPKELKAAEELFLKI-RPYV 198
Query: 172 RKFNGDFDDYREKLLTSLGE---AMVYNPSVAAEQDDDEDYED 211
F+ Y L G A+ Y+ + + E+ ++
Sbjct: 199 TYFHS--SKYISDLAN--GNICVAIGYSGDIYQAKSRAEEAKN 237
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 26.8 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+ LTLN P+ L N + E +DAL A+K
Sbjct: 9 GVLVLTLNRPEKL------NAITGELLDALYAALK 37
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 26.7 bits (59), Expect = 5.9
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 101 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
++ VA LT+ D L N D + +D + A+
Sbjct: 173 RRDGVAR--LTMCRDDRL------NAEDGQQVDDMETAV 203
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 26.9 bits (59), Expect = 6.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 99 GGQKARVALAELTLNNPDILILDEPTNN-LDIES-IDALAEAIKNYQ 143
GG AR+ N+ + + DI I+ E I+
Sbjct: 37 GGTSARMGFVREGKNDSVHACVTRYSMKRKDITEIIEFFNEIIELMP 83
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 26.8 bits (60), Expect = 6.1
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE---AMVYNPSVAAEQDDD 206
+ D + I EL L N+ FN D+ + GE M++N S +
Sbjct: 163 TTDPKEIEAAYNELKKL-MPNVAAFNS--DNPANPYME--GEVNLGMIWNGSAFVARQAG 217
Query: 207 EDYE 210
+
Sbjct: 218 TPID 221
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 26.4 bits (59), Expect = 6.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAI 139
A LTLN+P N L + L + +
Sbjct: 22 ARLTLNSPHNR------NALSTALVSQLHQGL 47
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein
binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Length = 150
Score = 25.8 bits (56), Expect = 7.2
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 111 TLNNPDILILDEPTNNLD-------IESIDALAEAIKNYQGGVIL 148
N DIL DE D E ++ LA ++ N G+ L
Sbjct: 40 PNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRL 84
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
pathway, isopentenyl phsophate kinase, beta-alpha
sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
{Thermoplasma acidophilum} PDB: 3lkk_A*
Length = 249
Score = 26.1 bits (58), Expect = 7.9
Identities = 3/35 (8%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 117 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSH 151
++ +I ++ + + ++ V H
Sbjct: 14 VITDKSAYRTARTYAIRSIVKVLSGI-EDLVCVVH 47
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 26.1 bits (58), Expect = 8.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 128 DIESIDALAEAIKNYQGGVILVSHDE 153
+E D L E ++N V+L H
Sbjct: 401 GVEISDNLEEVVRNADAIVVLAGHSA 426
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 26.0 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+TL+ P+ N LD E +L EAI+
Sbjct: 13 DALYITLDYPEKK------NGLDAELGTSLLEAIR 41
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 26.2 bits (58), Expect = 10.0
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+ D G A+L ++ L E + S +
Sbjct: 316 LEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFE 362
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.408
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,400,794
Number of extensions: 209722
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 127
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)