RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2681
(211 letters)
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 72.6 bits (178), Expect = 2e-16
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 30 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE------YLMKLFNLPYEKSRRQL--- 80
+ EL K R +IG Q +L P T E + E+ R++
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 81 -GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
M L LSGGQ+ RVA+A NNP I++ D+PT LD ++ + + + +
Sbjct: 129 LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 140 KNYQG----GVILVSHDERLIRETD 160
K V++V+HD + R +
Sbjct: 189 KKLNEEDGKTVVVVTHDINVARFGE 213
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 72.2 bits (177), Expect = 5e-16
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
GL + + LSGGQ+ R+A+A L + ILILDE T+ LD ES A+ A+ Q
Sbjct: 141 GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 199
Query: 144 GG--VILVSHDERLIRETD 160
++++H I + D
Sbjct: 200 KNRTSLVIAHRLSTIEQAD 218
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 69.9 bits (171), Expect = 2e-15
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----L 80
ELT R +IG QH +L T + ++L N P ++ +R+ L
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL 125
Query: 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+ GL + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++ E +K
Sbjct: 126 SLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
Query: 141 NYQGG----VILVSHDERLIRE 158
+ ++L++H+ +++
Sbjct: 185 DINRRLGLTILLITHEMDVVKR 206
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 69.8 bits (171), Expect = 3e-15
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+++A + LNNP ILILDE T+ LD+ES + EA+ ++V+H
Sbjct: 155 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214
Query: 155 LIRETD 160
I D
Sbjct: 215 TITHAD 220
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 67.9 bits (166), Expect = 1e-14
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 54 HLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 106
++P T E + +K+ P ++ ++ + + + P LSGGQ+ RVA
Sbjct: 88 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-AQLSGGQRQRVA 146
Query: 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRE 158
+A + PD+L++DEP +NLD + A+ IK Q I V+HD+
Sbjct: 147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 202
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 67.7 bits (165), Expect = 1e-14
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 8 LRIAVLQGLRNPLS---FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 64
LR+ + GL P +I K P KG I Q L+P T +
Sbjct: 46 LRM--IAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS--YALYPHMTVYDN 101
Query: 65 LM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 117
+ KL +P ++ ++ + GL + P R+LSGGQ+ RVAL + P +
Sbjct: 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQV 160
Query: 118 LILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRE 158
++DEP +NLD + + +K Q I V+HD+
Sbjct: 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT 205
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 68.4 bits (167), Expect = 1e-14
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK------SRRQL 80
GEL ++G ++ S R + Q S + P + + Y + Q
Sbjct: 84 GELEASEGIIKHSGR--VSFCSQFS--WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 139
Query: 81 GMFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
+ +T+ LSGGQ+AR++LA + D+ +LD P LD+ + + + E
Sbjct: 140 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 199
Query: 138 AIKNYQGG---VILVSHDERLIRETD 160
+ ILV+ +R+ D
Sbjct: 200 SCVCKLMANKTRILVTSKMEHLRKAD 225
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 66.4 bits (162), Expect = 6e-14
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 26 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLPYEKSRRQ-- 79
G+L + R R+ QH +L+ T E +M ++ L +R +
Sbjct: 73 DGQLKVADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERAL 130
Query: 80 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
L G+ A LSGGQ+ RV++A PD+L+ DEPT+ LD E + +
Sbjct: 131 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 190
Query: 138 AIKNYQG---GVILVSHDERLIRE 158
++ +++V+H+ R
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARH 214
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 65.8 bits (160), Expect = 9e-14
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
EK+ + L L +LSGGQ V + + NP ++++DEP +
Sbjct: 129 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 134 ALAEAIKNYQG---GVILVSHDERLIRE 158
+ + + +++ H ++
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVLN 215
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 66.0 bits (159), Expect = 2e-13
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 90 HTIPIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
P+ LSGG++ + A++ +LILDEPT LD E L ++ Y
Sbjct: 272 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 331
Query: 144 ---GGVILVSHDERLIRETDCELWALEKKN 170
VILVSHDE L D + + +N
Sbjct: 332 KKIPQVILVSHDEELKDAAD-HVIRISLEN 360
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 64.4 bits (155), Expect = 4e-13
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 90 HTIPIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
P+ LSGG++ + A++ +LILDEPT LD E L ++ Y
Sbjct: 195 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 254
Query: 144 G---GVILVSHDERLIRETDCELWALEKKN 170
VILVSHDE L D + + +N
Sbjct: 255 KKIPQVILVSHDEELKDAAD-HVIRISLEN 283
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 63.8 bits (155), Expect = 4e-13
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 155 LIRETD 160
++ D
Sbjct: 200 TVKNAD 205
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 63.0 bits (153), Expect = 9e-13
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ------LGMF-GLPSYAHTIP 93
R+G G +FP+ T E LM +K + +F L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVS 150
LSGG++ +A+ ++ P +L++DEP+ L + + E I+ ++LV
Sbjct: 138 -GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 151 HDERLIRE 158
+ +
Sbjct: 197 QNALGALK 204
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 62.2 bits (151), Expect = 1e-12
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
+SGGQ+ R+A+A L NP IL+LDE T +LD ES + +A+ + G ++++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 155 LIRETD 160
I + D
Sbjct: 200 TIVDAD 205
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 59.2 bits (143), Expect = 1e-11
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 22 FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-- 79
++KP G + +I + + +YL + +L K +
Sbjct: 50 YLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV--PRKISVEDYLKAVASLYGVKVNKNEI 107
Query: 80 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136
L + + +LS G RV LA L N +I +LD+P +D +S +
Sbjct: 108 MDALESVEVLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 137 EAIKNY--QGGVILVSHDERL 155
++I + G++++S E L
Sbjct: 166 KSILEILKEKGIVIISSREEL 186
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 57.3 bits (138), Expect = 8e-11
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 22 FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD-DTPCEYLMKLFNLPYEKSRRQ- 79
KG + L ++ + + P TP + + L ++
Sbjct: 48 MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 107
Query: 80 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIE 130
G L LSGG+ RV LA + L +L+LDEP N+LD+
Sbjct: 108 DVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 131 SIDALAEAIKNYQG---GVILVSHDERLIRE 158
AL + + +++ SHD
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLR 197
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 56.9 bits (137), Expect = 1e-10
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 36 LRKSPRLRIGKFDQHSGEHLFPDDTP---CEYLMKLFNLPY----EKSRRQLGMFGLPSY 88
R I + +G + + ++ + E R + GL
Sbjct: 69 EPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK 126
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GG 145
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K
Sbjct: 127 IKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 185
Query: 146 VILVSHDERLIRE 158
+++ SH+ +
Sbjct: 186 ILVSSHNMLEVEF 198
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 56.4 bits (136), Expect = 2e-10
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 37 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY--------EKSRRQLGMFGLPSY 88
+ ++ Q +F L P KS + GLP
Sbjct: 83 HRYLHRQVAAVGQEP--QVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQG 140
Query: 89 AHTI---PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKN 141
T LSGGQ+ VALA + P +LILD+ T+ LD S L E+ +
Sbjct: 141 YDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPER 200
Query: 142 YQGGVILVSHDERLIRETD 160
Y V+L++ L+ + D
Sbjct: 201 YSRSVLLITQHLSLVEQAD 219
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 53.8 bits (129), Expect = 2e-09
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 93
+G Q L+P + E + +KL E ++ + L P
Sbjct: 71 ERGVGMVFQS--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 128
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGG-VILV 149
+ LSGGQ+ RVA+ + P + +LDEP +NLD + + G +I V
Sbjct: 129 -KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 150 SHDERLIRE 158
+HD+
Sbjct: 188 THDQVEAMT 196
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 50.9 bits (121), Expect = 1e-08
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 8 LRIAVLQGLRNPLS-FIKPKGELTPNKGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYL 65
+RI + GL P + + L + G+L P R IG Q L+P+ T E +
Sbjct: 48 MRI--IAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT--WALYPNLTAFENI 103
Query: 66 ---MKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118
+ + ++ + + + P R+LSG Q+ RVALA + +P +L
Sbjct: 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLL 162
Query: 119 ILDEPTNNLD---IESIDALAEAIKNYQGG-VILVSHDERLIRE 158
+LDEP +NLD +S AL + +++ G +++VSHD I
Sbjct: 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA 206
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 44.3 bits (104), Expect = 3e-06
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRD 96
+ I Q+ LFP + L + ++ + P
Sbjct: 71 KHDIAFVYQN--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-LT 127
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQG-GVILVSHD 152
LSGG++ RVALA + NP IL+LDEP + LD E+ + + V+ ++HD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 153 ERLIRE 158
+ R
Sbjct: 188 QTEARI 193
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 42.8 bits (99), Expect = 1e-05
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 35 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 94
EL K+P + ++ + +D P +K P K + +
Sbjct: 285 ELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYL----------- 333
Query: 95 RDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VI 147
SGG+K ALA L + +LDE LDI ++ +A I+ ++ I
Sbjct: 334 ---SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 148 LVSHDERLIRETD 160
++S + ++D
Sbjct: 391 VISLKNTMFEKSD 403
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 41.5 bits (97), Expect = 2e-05
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 21/150 (14%)
Query: 27 GELTPNKGELR---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 77
G + P++GE+R R IG Q LFP + + R
Sbjct: 46 GIVKPDRGEVRLNGADITPLPPERRGIGFVPQD--YALFPHLSVYRNIAYGLRNVERVER 103
Query: 78 RQ-----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
+ G+ P LSGG++ RVALA + P +L+LDEP + +D+++
Sbjct: 104 DRRVREMAEKLGIAHLLDRKP-ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 133 DALAEAIKNYQGG----VILVSHDERLIRE 158
L E ++ Q ++ V+HD
Sbjct: 163 GVLMEELRFVQREFDVPILHVTHDLIEAAM 192
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 37.3 bits (85), Expect = 5e-04
Identities = 16/166 (9%), Positives = 40/166 (24%), Gaps = 14/166 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
L + + + + K F + +
Sbjct: 22 ERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV---- 77
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI--ESIDALAEAIKNYQG 144
+ A E + ++I+DE + D + + + +
Sbjct: 78 ------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV 131
Query: 145 GVILVSHDERLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTSL 189
V+ + E+ L + + + D E +L+ L
Sbjct: 132 NVVATIPIRDVHPLVK-EIRRLPGAVLIELTPENRDVILEDILSLL 176
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 32.3 bits (71), Expect = 0.042
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV-ILVSHDERLIRETDCELW 164
+LA L N + LD N L I L E+++ + LV +D E + L
Sbjct: 388 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447
Query: 165 ALEKKN 170
ALEK
Sbjct: 448 ALEKDK 453
Score = 24.9 bits (52), Expect = 9.9
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
++ NP + L+ +N L + + + ++
Sbjct: 46 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81
Score = 24.9 bits (52), Expect = 10.0
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
D+ + + AEL ++ L ++ A++
Sbjct: 8 DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 53
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 29.6 bits (66), Expect = 0.14
Identities = 15/115 (13%), Positives = 27/115 (23%), Gaps = 6/115 (5%)
Query: 35 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-YAHTIP 93
E R + F P+ ++ + + Y +
Sbjct: 22 EERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVY 81
Query: 94 IRDLSGGQKARVA-LAELTLNNPDI-LILDEPTNNLDIESIDALAEAIKNYQGGV 146
G K A + + + LD N I + K + GG
Sbjct: 82 PALRQAGWKGYWIDAASTLRMDKEAIITLDP-VNLKQIL--HGIHHGTKTFVGGA 133
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 28.6 bits (62), Expect = 0.50
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+ LN P+ N ++ L E +
Sbjct: 15 LHVQLNRPEKR------NAMNRAFWRELVECFQ 41
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 27.7 bits (60), Expect = 1.2
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 125 NNLDIESIDALAEAIKNYQ 143
N + ES +AL + +++++
Sbjct: 339 NAVPYESCEALVQFMEHFK 357
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Escherichia coli [TaxId: 562]}
Length = 360
Score = 27.4 bits (59), Expect = 1.3
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 125 NNLDIESIDALAEAIKNYQ 143
N + +E + AL + + ++
Sbjct: 338 NAMPLEGVKALTDFMVEFE 356
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 26.3 bits (57), Expect = 2.2
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 158 ETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMV 194
+ A++ + + G + ++ + + E +V
Sbjct: 101 IGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLV 137
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 26.1 bits (56), Expect = 2.5
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 125 NNLDIESIDALAEAIKNYQGGVILVSHD 152
NNL ++I A + + VI +
Sbjct: 1 NNLQRDAIAAAIDVLNE--ERVIAYPTE 26
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Bacillus alcalophilus [TaxId: 1445]}
Length = 360
Score = 26.6 bits (57), Expect = 2.7
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 125 NNLDIESIDALAEAIKNYQ 143
N + I++ AL E + ++
Sbjct: 339 NAVPIDACIALRELMIQFK 357
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 25.0 bits (53), Expect = 5.9
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 191
+ +T C L++L N + ++ R T +
Sbjct: 149 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 189
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 551
Score = 25.2 bits (55), Expect = 8.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 74 EKSRRQLGMFGLPSYAHTIPI 94
E + +LGM G YA TI +
Sbjct: 205 EATELKLGMLGHTCYAETISV 225
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.408
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 822,394
Number of extensions: 39886
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 50
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.4 bits)