BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2684
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 102/232 (43%), Gaps = 53/232 (22%)
Query: 9 FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
SGGW+++++ NHLD V WL NYL T T + +SHD FL
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 608
Query: 69 NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 126
+N+C II+ + KL YKGNFT F KK K E +L+ K +G+ +K+
Sbjct: 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 668
Query: 127 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 186
KA IVK + ++
Sbjct: 669 KA-----------------------------------IVK---------------VTNME 678
Query: 187 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
F YPG K + +NF + SR+A++GPNG GKST +N+L GEL P G+V
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
P K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741
Query: 292 DQHSGEHLFP--DDTPCEYLMKLF 313
QH+ H+ D TP EY+ F
Sbjct: 742 KQHAFAHIESHLDKTPSEYIQWRF 765
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN-LLKGELT--PNKGELRKSPRLRIGKF 291
K+LL K L R + GPNG GKST + + G++ P + E R +
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV-------Y 499
Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
+H + D + +++ + E + +L FG +PI LSGG K ++AL
Sbjct: 500 VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559
Query: 352 AELTL 356
A L
Sbjct: 560 ARAVL 564
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
G K+LL K L R + GPNG GKST + +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI 481
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 9 FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
SGGW+ +++ NHLD V WL NYL T T + +SHD FL
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 602
Query: 69 NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 126
+N+C II+ + KL YKGNFT F KK K E +L+ K +G+ +K+
Sbjct: 603 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 662
Query: 127 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 186
KA ++ + +
Sbjct: 663 KA--------------------------------------------------IVKVTNXE 672
Query: 187 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
F YPG K + +NF + SR+A++GPNG GKST +N+L GEL P G+V
Sbjct: 673 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
P K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI
Sbjct: 676 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 735
Query: 292 DQHSGEHLFP--DDTPCEYLMKLF 313
QH+ H+ D TP EY+ F
Sbjct: 736 KQHAFAHIESHLDKTPSEYIQWRF 759
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN-LLKGELT--PNKGELRKSPRLRIGKF 291
K+LL K L R + GPNG GKST + G++ P + E R +
Sbjct: 441 AKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTV-------Y 493
Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
+H + D + +++ + E + +L FG PI LSGG K ++AL
Sbjct: 494 VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLAL 553
Query: 352 AELTL 356
A L
Sbjct: 554 ARAVL 558
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 222
G K+LL K L R + GPNG GKST
Sbjct: 440 GAKILLNKTQLRLKRARRYGICGPNGCGKSTL 471
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 9 FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
SGGW+ +++ NHLD V WL NYL T T + +SHD FL
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 608
Query: 69 NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 126
+N+C II+ + KL YKGNFT F KK K E +L+ K +G+ +K+
Sbjct: 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 668
Query: 127 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 186
KA ++ + +
Sbjct: 669 KA--------------------------------------------------IVKVTNXE 678
Query: 187 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
F YPG K + +NF + SR+A++GPNG GKST +N+L GEL P G+V
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
P K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741
Query: 292 DQHSGEHLFP--DDTPCEYLMKLF 313
QH+ H+ D TP EY+ F
Sbjct: 742 KQHAFAHIESHLDKTPSEYIQWRF 765
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN-LLKGELT--PNKGELRKSPRLRIGKF 291
K+LL K L R + GPNG GKST + G++ P + E R +
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTV-------Y 499
Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
+H + D + +++ + E + +L FG PI LSGG K ++AL
Sbjct: 500 VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLAL 559
Query: 352 AELTL 356
A L
Sbjct: 560 ARAVL 564
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 222
G K+LL K L R + GPNG GKST
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTL 477
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 75/178 (42%), Gaps = 39/178 (21%)
Query: 184 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
DV+F YP +L+ + F L ALVGPNG GKST LL+ P GKVLL+
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 242 ---VNFGLD-MESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRL-RIGKFDQH 294
V + + ++VA VG P G+S N+ G L ++P + I
Sbjct: 81 EPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAME 132
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
SG H F P Y ++G G LSGGQ+ VALA
Sbjct: 133 SGAHDFISGFPQGY------------DTEVGETG----------NQLSGGQRQAVALA 168
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 75/180 (41%), Gaps = 39/180 (21%)
Query: 182 LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
DV+F YP +L+ + F L ALVGPNG GKST LL+ P GKVLL
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 240 EK---VNFGLD-MESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRL-RIGKFD 292
+ V + + ++VA VG P G+S N+ G L ++P + I
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVA 130
Query: 293 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
SG H F P Y ++G G LSGGQ+ VALA
Sbjct: 131 MESGAHDFISGFPQGY------------DTEVGETG----------NQLSGGQRQAVALA 168
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 25/141 (17%)
Query: 234 KGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------ 286
KGKV+ L+ VN ++ R ++GP+G GK+TF+ ++ G P+ GEL RL
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74
Query: 287 --------RIGKFDQHSGEHLFPDDTPCEYL------MKLFNLPYEKSRRQLG-MFGLPS 331
+IG Q L+P+ T E + MK+ K ++ + +
Sbjct: 75 LIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 332 YAHTIPIRDLSGGQKARVALA 352
+ P R+LSGGQ+ RVALA
Sbjct: 133 VLNHFP-RELSGGQQQRVALA 152
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 183 HDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
DV+F YP +L+ + F L ALVGPNG GKST LL+ P GKVLL+
Sbjct: 20 QDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79
Query: 241 K---VNFGLD-MESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRL-RIGKFDQ 293
V + + ++VA VG P G+S N+ G L ++P + I
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAM 131
Query: 294 HSGEHLFPDDTPCEY 308
SG H F P Y
Sbjct: 132 ESGAHDFISGFPQGY 146
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 234 KGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------ 286
KGKV+ L+ VN ++ R ++GP+G GK+TF+ ++ G P+ GEL RL
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74
Query: 287 --------RIGKFDQHSGEHLFPDDTPCEYL------MKLFNLPYEKSRRQLG-MFGLPS 331
+IG Q L+P+ T E + MK+ K ++ + +
Sbjct: 75 LIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 332 YAHTIPIRDLSGGQKARVALA 352
+ P R+LSG Q+ RVALA
Sbjct: 133 VLNHFP-RELSGAQQQRVALA 152
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
G V L+ VN ++ R ++GP+G GK+TF+ ++ G P+ G++ +
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 279
+ L+ V+ + VA++GPNG GKST L LL G L+P+ GE
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
+ L+ V+ + VA++GPNG GKST L LL G L+P+ G+ L N
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 183 HDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
DV+F YP ++L+ + F L ALVGPNG GKST LL+ P G++LL+
Sbjct: 18 QDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLD 77
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 232 PNKGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
PN+ VL L+ + F L ALVGPNG GKST LL+ P G+L
Sbjct: 25 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L + ++ F Y L +++NF L+ +A++G NG GKST L+LL G P +GK+
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
L +++NF L+ +A++G NG GKST L+LL G P +G++
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
G ++ + D+ ++K L EK LG G+
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 160
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 161 -LSGGQRARISLA 172
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
YPGG + V+F + V L+GP+G GK+T L L+ G P KG V +
Sbjct: 24 YPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IGKFD 292
V+F + V L+GP+G GK+T L L+ G P KG++ P+ R +G
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 293 QHSG--EHLFPDDTPCEYLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQK 346
Q+ +H+ D + ++ +P + + R L L SYA+ P +LSGGQ+
Sbjct: 94 QNYALFQHMTVYDN-VSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-HELSGGQQ 151
Query: 347 ARVALA 352
RVALA
Sbjct: 152 QRVALA 157
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+V F Y K +L+ + F + +VALVGP G GK+T +NLL ++G++L++ ++
Sbjct: 359 NVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 244 F 244
Sbjct: 419 I 419
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELRKSPR 285
+K K +L+ + F + +VALVGP G GK+T +NLL +G++ + ++RK R
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 32 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 91
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
G ++ + D+ ++K L EK LG G+
Sbjct: 92 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 142
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 143 -LSGGQRARISLA 154
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 182 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VT F GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 21 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 77
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 79
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
G ++ + D+ ++K L EK LG G+
Sbjct: 80 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 130
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 131 -LSGGQRARISLA 142
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 182 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VT F GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+ ++GPNGIGK+TF +L GE+T ++G V EK
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP--DDTPCEYL 309
+ ++GPNGIGK+TF +L GE+T ++G + +P +I + + +FP D T +YL
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSV--TPEKQILSYKP---QRIFPNYDGTVQQYL 351
Query: 310 -------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ + +E+ ++L + L + DLSGG+ ++ +A
Sbjct: 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESN----VNDLSGGELQKLYIA 397
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
+ ++G NG+GK+T L +L GE+ PN G+ P ++GK
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGD----PNSKVGK 62
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKG 235
+ ++G NG+GK+T L +L GE+ PN G
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFG 54
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 182 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VT F GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 32/136 (23%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------- 287
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 79
Query: 288 ----------IG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 336
IG +D++ + E + K EK LG G+
Sbjct: 80 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF----AEKDNIVLGEGGIT------ 129
Query: 337 PIRDLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 130 ----LSGGQRARISLA 141
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 32/178 (17%)
Query: 184 DVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+VTF YPG V L +N + VALVG +G GKST +L+ ++G++L++
Sbjct: 346 NVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGH 405
Query: 243 NFG----LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
+ + ++VALV N ++L + N R +Q+S E
Sbjct: 406 DLREYTLASLRNQVALVSQN-------VHLFNDTVANNIAYART---------EQYSREQ 449
Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
+ + Y M N +G G+ LSGGQ+ R+A+A L
Sbjct: 450 I-EEAARMAYAMDFINKMDNGLDTVIGENGVL----------LSGGQRQRIAIARALL 496
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 36/181 (19%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+V F Y G+ L+ V+F + +ALVGP+G GKST L LL + G + ++
Sbjct: 56 FENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115
Query: 242 VNFG----LDMESRVALVGPNGI--GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
+ + S + +V + + + N+ G +T E+ + Q +
Sbjct: 116 QDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAA--------QAA 167
Query: 296 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355
G H + P E R Q+G GL LSGG+K RVA+A
Sbjct: 168 GIH-----------DAIMAFP-EGYRTQVGERGLK----------LSGGEKQRVAIARTI 205
Query: 356 L 356
L
Sbjct: 206 L 206
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 32/136 (23%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------- 287
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109
Query: 288 ----------IG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 336
IG +D++ + E + K EK LG G+
Sbjct: 110 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF----AEKDNIVLGEGGIT------ 159
Query: 337 PIRDLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 160 ----LSGGQRARISLA 171
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 32/136 (23%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------- 287
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109
Query: 288 ----------IG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 336
IG +D++ + E + K EK LG G+
Sbjct: 110 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF----AEKDNIVLGEGGIT------ 159
Query: 337 PIRDLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 160 ----LSGGQRARISLA 171
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 286
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 286
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S R+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 41/166 (24%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254
+L+ +N + V ++GP+G GKSTFL L LLE + E + +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN----------LLEDFD-----EGEIII 62
Query: 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL----M 310
G N K T LN ++R+ + +F+ LFP T + M
Sbjct: 63 DGINLKAKDTNLN-----------KVREEVGMVFQRFN------LFPHMTVLNNITLAPM 105
Query: 311 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
K+ P EK+ + L GL AH P LSGGQ RVA+A
Sbjct: 106 KVRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIA 150
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 41/166 (24%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254
+L+ +N + V ++GP+G GKSTFL L LLE + E + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN----------LLEDFD-----EGEIII 83
Query: 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL----M 310
G N K T LN ++R+ + +F+ LFP T + M
Sbjct: 84 DGINLKAKDTNLN-----------KVREEVGMVFQRFN------LFPHMTVLNNITLAPM 126
Query: 311 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
K+ P EK+ + L GL AH P LSGGQ RVA+A
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIA 171
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 183 HDVTFGY------PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
HD+TF P V+L+ +N + + +VG +G GKST L++ P G+
Sbjct: 2 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 237 VLLEKVNFGLDMESRVALVGPN 258
VL++ G D+ AL PN
Sbjct: 62 VLID----GHDL----ALADPN 75
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 62
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VGPNGIGK+TF+ +L G P +GKV
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E L K
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEY--EGTVYELLSK 426
Query: 312 L----FNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
+ N + K+ + LG+ L + + DLSGG+ RVA+A L
Sbjct: 427 IDSSKLNSNFYKTELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLL 473
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGE 279
V +VGPNG GK+T + +L G+L PN E
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPNLCE 133
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPN 233
V +VGPNG GK+T + +L G+L PN
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPN 130
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VGPNGIGK+TF+ +L G P +GKV
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E L K
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKPQYIKAEY--EGTVYELLSK 440
Query: 312 L----FNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
+ N + K+ + LG+ L + + DLSGG+ RVA+A L
Sbjct: 441 IDSSKLNSNFYKTELLKPLGIIDL----YDRNVEDLSGGELQRVAIAATLL 487
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGE 279
V +VGPNG GK+T + +L G+L PN E
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCE 147
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPN 233
V +VGPNG GK+T + +L G+L PN
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPN 144
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L + D++ GY K +LE++ ++ + V GPNGIGK+T L + L P KG+++
Sbjct: 11 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 229 ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
+L+ K +LE++ ++ + V GPNGIGK+T L + L P KGE+
Sbjct: 15 DLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSP------RL 286
G +L+ VN + +VG NG GK+T L +L G L GE L SP R
Sbjct: 23 GDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRK 81
Query: 287 RIGKFDQHSGEHLFPD--DTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRD 340
+G Q+ + + + +++ L + R++ L + GL A P+ +
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPL-N 140
Query: 341 LSGGQKARVALAEL 354
LSGGQK R+A+A +
Sbjct: 141 LSGGQKQRLAIASM 154
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 180 LGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L +VTF YPG +V L +N + VALVG +G GKST +L+ ++G +L
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 239 LEKVNFG----LDMESRVALVGPN 258
++ + + ++VALV N
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQN 425
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 38/154 (24%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELRK-- 282
P + L +N + VALVG +G GKST +L+ +G + + +LR+
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411
Query: 283 --SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSYA--- 333
S R ++ Q+ HLF D N+ Y E SR Q+ +YA
Sbjct: 412 LASLRNQVALVSQNV--HLFNDTVAN-------NIAYARTEEYSREQIEEAARMAYAMDF 462
Query: 334 --------HTIPIRD---LSGGQKARVALAELTL 356
TI + LSGGQ+ R+A+A L
Sbjct: 463 INKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+L V F Y + +L ++F S +A GP+G GKST +LL+ P G++
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 239 LE 240
++
Sbjct: 61 ID 62
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 28/139 (20%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSPRL 286
+L ++F S +A GP+G GKST +LL+ P GE+ ++ R
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 287 RIGKFDQHSG-------EHL---FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT- 335
+IG Q S E+L D E L ++ +L + +S + +P +T
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE----NMPDQLNTE 132
Query: 336 IPIRD--LSGGQKARVALA 352
+ R +SGGQ+ R+A+A
Sbjct: 133 VGERGVKISGGQRQRLAIA 151
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 183 HDVTFGY------PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
HD+TF P V+L+ +N + + +VG G GKST L++ P G+
Sbjct: 2 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 237 VLLEKVNFGLDMESRVALVGPN 258
VL++ G D+ AL PN
Sbjct: 62 VLID----GHDL----ALADPN 75
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG G GKST L++ P G++
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQV 62
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+L + ++ + Y G L+ +N + A++G NG+GKST G L P+ G++L
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 239 LE 240
+
Sbjct: 67 FD 68
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------RKSP---R 285
L+ +N + A++G NG+GKST G L P+ G + RK R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 286 LRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQ----LGMFGLPSYAHTIPIR 339
IG Q LF + N LP ++ R++ L G+ + P
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTH 142
Query: 340 DLSGGQKARVALA 352
LS GQK RVA+A
Sbjct: 143 CLSFGQKKRVAIA 155
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 184 DVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
DVTF Y G K L V+F + VALVG +G GKST NL + G + L+
Sbjct: 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 58/150 (38%), Gaps = 34/150 (22%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELR--KSP 284
K K L V+F + VALVG +G GKST NL G + + ++R K
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSYA----HTI 336
LR HLF D N+ Y E +R Q+ ++A +
Sbjct: 414 NLRRHFALVSQNVHLFNDTIAN-------NIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
Query: 337 PI----------RDLSGGQKARVALAELTL 356
P LSGGQ+ RVA+A L
Sbjct: 467 PQGLDTVIGENGTSLSGGQRQRVAIARALL 496
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255
L+ V+ ++ ++GPNG GKST +N++ G L ++G+V E + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 256 G-------PNGIGKSTFL-NLLKGELTPNKGEL 280
G P + + T L NLL GE+ P + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPL 115
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255
L+ V+ ++ ++GPNG GKST +N++ G L ++G+V E + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 256 G-------PNGIGKSTFL-NLLKGELTPNKGEL 280
G P + + T L NLL GE+ P + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL 115
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VGPNGIGK+TF+ L G P +GK+
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPN 233
V +VGPNG GKST + +L G+L PN
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPN 74
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPN 276
V +VGPNG GKST + +L G+L PN
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPN 74
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+ +VGPNGIGK+TF+ L G P +G++ L + Q+ + T E L K
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD--LTVAYKPQYIKADY--EGTVYELLSK 370
Query: 312 L----FNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
+ N + K+ + LG+ L + + +LSGG+ RVA+A L
Sbjct: 371 IDASKLNSNFYKTELLKPLGIIDL----YDREVNELSGGELQRVAIAATLL 417
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
++ F Y P V+L+ +N + + +VG +G GKST L++ P G+VL++
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID-- 69
Query: 243 NFGLDMESRVALVGPN 258
G D+ AL PN
Sbjct: 70 --GHDL----ALADPN 79
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
++ F Y P V+L+ +N + + +VG +G GKST L++ P G+VL++
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID-- 63
Query: 243 NFGLDMESRVALVGPN 258
G D+ AL PN
Sbjct: 64 --GHDL----ALADPN 73
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
++ F Y P V+L+ +N + + +VG +G GKST L++ P G+VL++
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID-- 69
Query: 243 NFGLDMESRVALVGPN 258
G D+ AL PN
Sbjct: 70 --GHDL----ALADPN 79
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
++ F Y P V+L+ +N + + +VG +G GKST L++ P G+VL++
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID-- 63
Query: 243 NFGLDMESRVALVGPN 258
G D+ AL PN
Sbjct: 64 --GHDL----ALADPN 73
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
++ F Y P V+L+ +N + + +VG +G GKST L++ P G+VL++
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID-- 69
Query: 243 NFGLDMESRVALVGPN 258
G D+ AL PN
Sbjct: 70 --GHDL----ALADPN 79
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELR 281
L+GP G GKS FL L+ G + P++GE+R
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVR 56
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L+GP G GKS FL L+ G + P++G+V L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL 268
V+++G +G GKST L +L P +GKV LE E ++L+ +G +
Sbjct: 33 VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92
Query: 269 LKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 328
L ELT + + P L++GK + + E EYL+ L + SR+
Sbjct: 93 LIPELTALENVI--VPMLKMGKPKKEAKER-------GEYLLSELGLGDKLSRKPY---- 139
Query: 329 LPSYAHTIPIRDLSGGQKARVALA 352
+LSGG++ RVA+A
Sbjct: 140 -----------ELSGGEQQRVAIA 152
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------RKSP 284
TP + K L E V+ ++ + + G G GKST L ++ G + P G++ +K
Sbjct: 16 TPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
Query: 285 RLR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP--SYAHT 335
+R IG Q+ + F + E + N P ++ + GL S+
Sbjct: 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 336 IPIRDLSGGQKARVALAELTL 356
+P LSGG+K RVA+A + +
Sbjct: 135 VPFF-LSGGEKRRVAIASVIV 154
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+L VNF + S VA++G G GKST +NL+ + P +G+V +++++
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
E+ AL PN G +F N+ + N VL VNF + S VA++G G GKST
Sbjct: 328 EADNALALPNVEGSVSFENV-EFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTL 385
Query: 266 LNLLKGELTPNKGEL 280
+NL+ + P +G +
Sbjct: 386 MNLIPRLIDPERGRV 400
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG-------PNGIGKS 263
++GPNG GKST +N++ G L ++G+V E + + + G P + +
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 264 TFL-NLLKGELTPNKGEL 280
T L NLL GE+ P + L
Sbjct: 98 TVLENLLIGEINPGESPL 115
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------RKSP 284
TP + K L E V+ ++ + + G G GKST L ++ G + P G++ +K
Sbjct: 18 TPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 76
Query: 285 RLR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP--SYAHT 335
+R IG Q+ + F + E + N P ++ + GL S+
Sbjct: 77 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 336 IPIRDLSGGQKARVALAELTL 356
+P LSGG+K RVA+A + +
Sbjct: 137 VPFF-LSGGEKRRVAIASVIV 156
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
G ++ + D+ + ++K L E+ LG G+
Sbjct: 110 IMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 161 -LSGGQRARISLA 172
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---- 290
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 291 -----------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339
F E+ + L + E+ LG G+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 161 -LSGGQRARISLA 172
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---- 290
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 291 -----------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339
F E+ + L + E+ LG G+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 161 -LSGGQRARISLA 172
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
G ++ + D+ + ++K L E+ LG G+
Sbjct: 110 IMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 160
Query: 340 DLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 161 -LSGGQRARISLA 172
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNF 244
G+ +L+ VN + AL+GPNG GKST +L G E T +G++LL+ N
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPRLRIGKFD 292
G+ +L+ VN + AL+GPNG GKST +L G E T +GE+ D
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL---------LD 65
Query: 293 QHSGEHLFPDDTPCEYLMKLFNLPYE 318
+ L PD+ + L F P E
Sbjct: 66 GENILELSPDERARKGLFLAFQYPVE 91
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 37/184 (20%)
Query: 180 LGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+ + V+F Y + +L+ +N ++ VA VG +G GKST +NL+ G++L
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 239 LEKVN----FGLDMESRVALVGPNGIGKSTFL--NLLKGELTPNKGELRKSPRLRIGKFD 292
++ N + +++ LV + I S + N+L G T E+ ++ ++
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM------ 453
Query: 293 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ H F + NLP + ++G G+ LSGGQK R+++A
Sbjct: 454 --ANAHDF-----------IMNLP-QGYDTEVGERGVK----------LSGGQKQRLSIA 489
Query: 353 ELTL 356
+ L
Sbjct: 490 RIFL 493
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
TP G+VL LVG NGIGKST L +L G+ PN G P
Sbjct: 99 TPRPGQVL--------------GLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGK 236
+ LVG NGIGKST L +L G+ PN G+
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGR 133
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL 268
+ ++G NG GK+T + LL G L P++G+ + K+N + + ++A P G + F
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQ-KIAPKFP-GTVRQLFFKK 437
Query: 269 LKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
++G+ + + LRI +HL
Sbjct: 438 IRGQFLNPQFQTDVVKPLRIDDIIDQEVQHL 468
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 26/113 (23%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+ ++G NG GK+T + LL G L P++G+ P+L + Q FP + +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQ--DIPKLNVSMKPQKIAPK-FPG-----TVRQ 432
Query: 312 LFNLPYEKSRRQLGMFGLPSYAHTI--PIR----------DLSGGQKARVALA 352
LF ++K R G F P + + P+R LSGG+ RVA+
Sbjct: 433 LF---FKKIR---GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIV 479
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 9 FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAV-IWLD--NYLQTWKKTLLVVSHDQ 65
FSGG + R + LD++A+ + D N L+ K++ ++V+H Q
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
L+ I D +H+ + G+FTL K++ Q LT++
Sbjct: 225 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 266
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP-------- 305
L+GP+G GK+T L ++ G P++G++ +L D G + P D
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKL---VADPEKGIFVPPKDRDIAMVFQSY 90
Query: 306 -----------CEYLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
+ +KL +P ++ R + GL + P R+LSGGQ+ RVA
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVA 149
Query: 351 LA 352
L
Sbjct: 150 LG 151
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 182 LHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ P +G+V
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 239 LEKV 242
++ +
Sbjct: 64 IDNI 67
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE---------------LRKS 283
L+ VN + V+++GP+G GKST LN++ P +GE L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-------EKSRRQLGMFGLPS----Y 332
R +IG Q +L P T E + Y E+ +R L + +
Sbjct: 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 333 AHTIPIRDLSGGQKARVALA 352
A+ P LSGGQ+ RVA+A
Sbjct: 139 ANHKP-NQLSGGQQQRVAIA 157
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 179 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
++ L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ P +G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 236 KVLLEKV 242
+V ++ +
Sbjct: 61 EVYIDNI 67
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 29/140 (20%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE---------------LRKS 283
L+ VN + V+++GP+G GKST LN++ P +GE L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-------EKSRRQLGMFGLPS----Y 332
R +IG Q +L P T E + Y E+ +R L + +
Sbjct: 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 333 AHTIPIRDLSGGQKARVALA 352
A+ P LSGGQ+ RVA+A
Sbjct: 139 ANHKP-NQLSGGQQQRVAIA 157
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 32/136 (23%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------- 287
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 288 ----------IG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 336
IG +D++ + + C+ + E+ LG G+
Sbjct: 110 IMPGTIKENIIGVSYDEYRYKSVVK---ACQLQQDITKFA-EQDNTVLGEGGVT------ 159
Query: 337 PIRDLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 160 ----LSGGQRARISLA 171
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 9 FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAV-IWLD--NYLQTWKKTLLVVSHDQ 65
FSGG + R + LD++A+ + D N L+ K++ ++V+H Q
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
L+ I D +H+ + G+FTL K++ Q LT++
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 247
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 200 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
N L +ES ++GP G GK+ FL L+ G P+ G++LL+
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 32/132 (24%)
Query: 243 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
N L +ES ++GP G GK+ FL L+ G P+ G + D L
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL---------LDGKDVTDLS 68
Query: 301 PDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIR-------------------D 340
P+ ++ + ++L P+ ++ L FG+ P R
Sbjct: 69 PEKHDIAFVYQNYSLFPHMNVKKNLE-FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 341 LSGGQKARVALA 352
LSGG++ RVALA
Sbjct: 128 LSGGEQQRVALA 139
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 180 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ + +V F YP +L +N ++ VALVG +G GKST ++LL KGK+
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 238 LLEKVN 243
++ V+
Sbjct: 476 TIDGVD 481
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 35/143 (24%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-------GELTPNKGELR----KSPRL 286
+L+ ++F ++ +ALVGP+G GKST + LL+ GE+ + E++ + R
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 287 RIGK-------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP-- 337
+I FD E++ P M E++ R + + ++ +P
Sbjct: 1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA----QVEEAAR---LANIHNFIAELPEG 1206
Query: 338 ----IRD----LSGGQKARVALA 352
+ D LSGGQK R+A+A
Sbjct: 1207 FETRVGDRGTQLSGGQKQRIAIA 1229
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 184 DVTFGYPGGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227
+V F YP + L+ ++F ++ +ALVGP+G GKST + LL+
Sbjct: 1081 NVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 16/72 (22%)
Query: 226 LKGELT--------PNKGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNL-------L 269
+KG++T P++ V +L +N ++ VALVG +G GKST ++L L
Sbjct: 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471
Query: 270 KGELTPNKGELR 281
KG++T + ++R
Sbjct: 472 KGKITIDGVDVR 483
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 254 LVGPNGIGKSTFL---NLLK-----------GELTP-NKGELRKSPRLRIGKFDQH---- 294
++G +G GKST + NLL+ ELT ++ EL K+ R +IG QH
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR-QIGXIFQHFNLL 117
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
S +F + ++L N P ++ +R+ L + GL + P +LSGGQK RVA
Sbjct: 118 SSRTVFGN---VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVA 173
Query: 351 LA 352
+A
Sbjct: 174 IA 175
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 182 LHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L +VT Y G+ + L+ VN + V++ GP+G GKST LN++ P +G+V
Sbjct: 4 LKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVY 63
Query: 239 LEKV 242
++ +
Sbjct: 64 IDNI 67
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 29/140 (20%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG---------------ELRKS 283
L+ VN + V++ GP+G GKST LN++ P +G EL K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-------EKSRRQLGMFGLPS----Y 332
R +IG Q +L P T E + Y E+ +R L +
Sbjct: 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERF 138
Query: 333 AHTIPIRDLSGGQKARVALA 352
A+ P LSGGQ+ RVA+A
Sbjct: 139 ANHKP-NQLSGGQQQRVAIA 157
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGK 236
L +V F YP + +F L + S ALVGP+G GKST L+LL P G
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 431
Query: 237 VLLE 240
+ L+
Sbjct: 432 ISLD 435
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELRK-SP---RL 286
+ + + + S ALVGP+G GKST L+LL G ++ + ++R+ +P R
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 287 RIGKFDQHS-------GEHL-FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338
+IG Q E++ + D P + E + + P +T+
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 339 RD---LSGGQKARVALAELTL 356
LSGGQK R+A+A L
Sbjct: 510 EKGVLLSGGQKQRIAIARALL 530
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 254 LVGPNGIGKSTFL---NLLK-----------GELTP-NKGELRKSPRLRIGKFDQH---- 294
++G +G GKST + NLL+ ELT ++ EL K+ R +IG QH
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR-QIGMIFQHFNLL 117
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
S +F + ++L N P ++ +R+ L + GL + P +LSGGQK RVA
Sbjct: 118 SSRTVFGN---VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVA 173
Query: 351 LA 352
+A
Sbjct: 174 IA 175
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L +V F YP + +F L + S ALVGP+G GKST L+LL P G +
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 238 LLE 240
L+
Sbjct: 402 SLD 404
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 250 SRVALVGPNGIGKSTFLNLL-------KGELTPNKGELRK-SP---RLRIGKFDQHS--- 295
S ALVGP+G GKST L+LL G ++ + ++R+ +P R +IG Q
Sbjct: 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430
Query: 296 ----GEHL-FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD---LSGGQKA 347
E++ + D P + E + + P +T+ LSGGQK
Sbjct: 431 SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 490
Query: 348 RVALAELTL 356
R+A+A L
Sbjct: 491 RIAIARALL 499
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 254 LVGPNGIGKSTFL---NLLK-----------GELTP-NKGELRKSPRLRIGKFDQH---- 294
++G +G GKST + NLL+ ELT ++ EL K+ R +IG QH
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR-QIGMIFQHFNLL 94
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
S +F + ++L N P ++ +R+ L + GL + P +LSGGQK RVA
Sbjct: 95 SSRTVFGN---VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVA 150
Query: 351 LA 352
+A
Sbjct: 151 IA 152
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL-EKVNFGLDME 249
G L +N + +AL+GP+G GKST L + G P GK+ EK L +
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 250 SR-VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
R V LV N + + K P ELRK+PR I K + + L D
Sbjct: 74 DRNVGLVFQNW-ALYPHMTVYKNIAFPL--ELRKAPREEIDKKVREVAKMLHID------ 124
Query: 309 LMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
KL N P++ LSGGQ+ RVA+A
Sbjct: 125 --KLLNRYPWQ----------------------LSGGQQQRVAIA 145
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 180 LGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGE 229
+ + D+T Y GG +LE ++F + RV L+G G GKST FL LL E
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGE 272
G +LE ++F + RV L+G G GKST FL LL E
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 230 LTPNKG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
+T +KG KVLL+K++F D +RV +VG GKST +N LKG+ + G
Sbjct: 79 ITTHKGEPRKVLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKRASSVG 128
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
KVLL+K++F D +RV +VG GKST +N LKG+ + G
Sbjct: 88 KVLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKRASSVG 128
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 192 GKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
GKV ++ V+F + VAL+GP+G GK+T L +L G P G++ + V
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV 65
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 235 GKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
GKV ++ V+F + VAL+GP+G GK+T L +L G P GE+
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 23/119 (19%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 305
LVGPNG GKST L + G +T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 306 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTL 356
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKV 237
LVGPNG GKST L + G +T KG +
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSI 56
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 23/119 (19%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 305
LVGPNG GKST L + G +T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 306 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTL 356
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKV 237
LVGPNG GKST L + G +T KG +
Sbjct: 31 LVGPNGAGKSTLLARMAG-MTSGKGSI 56
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G V
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 235 GKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
G+V++ K +N + V VGP+G GKST L ++ G T G+L
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 182 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L +VT + G+V++ K +N + V VGP+G GKST L ++ G T G + +
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 235 GKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
G+V++ K +N + V VGP+G GKST L ++ G T G+L
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 182 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L +VT + G+V++ K +N + V VGP+G GKST L ++ G T G + +
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 235 GKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
G+V++ K +N + V VGP+G GKST L ++ G T G+L
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 182 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L +VT + G+V++ K +N + V VGP+G GKST L ++ G T G + +
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 38/151 (25%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL 268
+ L+GP+G GK+T L + G P +G++ +E N D E
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPE------------------- 74
Query: 269 LKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP---YEKSRR 322
KG P K R F ++ L+P T + + +KL +P +K R
Sbjct: 75 -KGVFVPPK------ERDVAXVFQSYA---LYPHXTVYDNIAFPLKLRKVPKQEIDKRVR 124
Query: 323 QLG-MFGLPSYAHTIPIRDLSGGQKARVALA 352
++ GL + P R+LSGGQ+ RVAL
Sbjct: 125 EVAEXLGLTELLNRKP-RELSGGQRQRVALG 154
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 185 VTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
V F YP + V GL +E + +ALVG +G GKST + LL+ P G V L+
Sbjct: 1036 VVFNYPTRPSI--PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 180 LGLHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L ++ F YP K +L+ +N + VALVG +G GKST + L++ P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 238 LLE 240
++
Sbjct: 448 SID 450
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 185 VTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
V F YP + V GL +E + +ALVG +G GKST + LL+ P G V L+
Sbjct: 1036 VVFNYPTRPSI--PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 180 LGLHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L ++ F YP K +L+ +N + VALVG +G GKST + L++ P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 238 LLE 240
++
Sbjct: 448 SID 450
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 184 DVTFGYP--GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
DV F YP L+ +NF + + ALVG G GKST LL
Sbjct: 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
L+ +NF + + ALVG G GKST LL +G+++ + + K++++S
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGK-NVNKYNRNSIRS 93
Query: 299 LF---PDDTPCEYLMKLFNLPYEK------------SRRQLGMF--GLPSYAHTIPIR-- 339
+ P DT +N+ Y K QL F LP TI
Sbjct: 94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 340 -DLSGGQKARVALAELTL 356
LSGG++ R+A+A L
Sbjct: 154 MKLSGGERQRIAIARCLL 171
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
LE +N ++ E +V ++GPNG GK+T L + G L P G + +
Sbjct: 21 LENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNIFI 62
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
LE +N ++ E +V ++GPNG GK+T L + G L P G +
Sbjct: 21 LENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNI 60
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 305
LVGPNG GKST L G T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 306 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTL 356
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKV 237
LVGPNG GKST L G T KG +
Sbjct: 31 LVGPNGAGKSTLLARXAGX-TSGKGSI 56
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQH----SGEHLFPDDTP 305
LVGPNG GKST L G T KG ++ + + K H S + P TP
Sbjct: 31 LVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 306 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTL 356
+ + L ++K+R +L L A + + D LSGG+ RV LA + L
Sbjct: 90 VWHYLTLHQ--HDKTRTEL----LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKV 237
LVGPNG GKST L G T KG +
Sbjct: 31 LVGPNGAGKSTLLARXAGX-TSGKGSI 56
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
GK +L+K+++ + + L G NG GK+T LN+L G V L
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
+GK +L+K+++ + + L G NG GK+T LN+L
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL 67
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNG-----IGKSTFLNLLKGELTPNKGELRKSPR- 285
PN K+ + KVN G D + PN + +T +L G+ +LR P
Sbjct: 57 PNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSE 116
Query: 286 ------LRIGKFDQHSGEHLFPDDTP 305
+G D HSG P D P
Sbjct: 117 GMLCSFSELGISDDHSGIIELPADAP 142
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
+L ++ LD + ++G +G GK+T L L G P+ GE+ S
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+L ++ LD + ++G +G GK+T L L G P+ G++ L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 208 RVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
RV L+G G+GKST N+ G + + +VL G D R +V G+S
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVL------GEDTYERTLMVD----GESAT 57
Query: 266 LNLLKGELTPNKGE 279
+ LL ++ NKGE
Sbjct: 58 IILL--DMWENKGE 69
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 208 RVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
RV L+G G+GKST N+ G + + +VL G D R +V G+S
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVL------GEDTYERTLMVD----GESAT 57
Query: 266 LNLLKGELTPNKGE 279
+ LL ++ NKGE
Sbjct: 58 IILL--DMWENKGE 69
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 208 RVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
RV L+G G+GKST N+ G + + +VL G D R +V G+S
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL------GEDTYERTLMVD----GESAT 88
Query: 266 LNLLKGELTPNKGE 279
+ LL ++ NKGE
Sbjct: 89 IILL--DMWENKGE 100
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 236 KVLL-----EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
KVLL E+ N G + RV L GP G GKSTF+ G++ +G K L +
Sbjct: 56 KVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYF-GKMLTERGH--KLSVLAVDP 112
Query: 291 FDQHSGEHLFPDDTPCEYLMKLFN 314
SG L D T L + N
Sbjct: 113 SSCTSGGSLLGDKTRMTELSRDMN 136
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 193 KVLL-----EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231
KVLL E+ N G + RV L GP G GKSTF+ LT
Sbjct: 56 KVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLT 99
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 208 RVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
RV L+G G+GKST N+ G + + +VL G D R +V G+S
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL------GEDTYERTLMVD----GESAT 57
Query: 266 LNLLKGELTPNKGE 279
+ LL ++ NKGE
Sbjct: 58 IILL--DMWENKGE 69
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
V L+G NG GK+T L+ + G + KGK++
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G + K+N + + L+GP+G GK+T L ++ G P +G++
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
+ K+N + + L+GP+G GK+T L ++ G P +G +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G + K+N + + L+GP+G GK+T L ++ G P +G++
Sbjct: 23 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
+ K+N + + L+GP+G GK+T L ++ G P +G +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE----LTPNKG 235
+L K+ D E R+ L+G + GK+T L L E +TP +G
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 50
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE----LTPNKG 278
+L K+ D E R+ L+G + GK+T L L E +TP +G
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 50
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE----LTPNKG 235
+L K+ D E R+ L+G + GK+T L L E +TP +G
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE----LTPNKG 278
+L K+ D E R+ L+G + GK+T L L E +TP +G
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
L + F + + VA+VG G GKS+ L+ L E+ +G V ++
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65
>pdb|3D70|A Chain A, Crystal Structure Of E253a Mutant Of Bmrr Bound To 22-Bp
Oligonucleotide
Length = 284
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|3Q5P|A Chain A, Crystal Structure Of Bmrr Bound To Tetracycline
Length = 278
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|3Q1M|A Chain A, Crystal Structure Of Bmrr Dimer Bound To Dna And The
Ligand 4-Amino- Quinaldine
pdb|3Q2Y|A Chain A, Crystal Structure Of Bmrr Bound To Ethidium
pdb|3Q3D|A Chain A, Crystal Structure Of Bmrr Bound To Puromycin
pdb|3Q5S|A Chain A, Crystal Structure Of Bmrr Bound To Acetylcholine
pdb|3Q5R|A Chain A, Crystal Structure Of Bmrr Bound To Kanamycin
Length = 284
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
Length = 338
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 72 CTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQ 131
C D HL KKLF+Y ++ +++ +Q RK ++ EL I ++ SK ER
Sbjct: 121 CFD--HLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKER- 177
Query: 132 HSHKALKEQARK 143
H+ + E +R+
Sbjct: 178 --HEQIAEISRE 187
>pdb|3D71|A Chain A, Crystal Structure Of E253q Bmrr Bound To 22 Base Pair
Promoter Site
Length = 284
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|1EXI|A Chain A, Crystal Structure Of Transcription Activator Bmrr, From B.
Subtilis, Bound To 21 Base Pair Bmr Operator And Tpsb
pdb|1EXJ|A Chain A, Crystal Structure Of Transcription Activator Bmrr, From B.
Subtilis, Bound To 21 Base Pair Bmr Operator And Tpp
pdb|1R8E|A Chain A, Crystal Structure Of Bmrr Bound To Dna At 2.4a Resolution
Length = 278
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|3D6Y|A Chain A, Crystal Structure Of R275e Mutant Of Bmrr Bound To Dna And
Berberine
pdb|3D6Z|A Chain A, Crystal Structure Of R275e Mutant Of Bmrr Bound To Dna And
Rhodamine
Length = 284
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|3IAO|A Chain A, Conformational Plasticity Of The Coiled Coil Domain Of
Bmrr Required For Bmr Promoter Binding-The Unliganded
Structure
Length = 278
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGN-FTLFKKMYVQKRKELTKEYELQEKQIREM- 118
V D S+ + +IHLD+ K Y G KK + +EL Y QE+QIRE
Sbjct: 36 VDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKL 95
Query: 119 -------KSQGMSKEKAERQHSHKALKE 139
++ + K++ +RQ + AL E
Sbjct: 96 DFLSALEQTISLVKKRMKRQMEYPALGE 123
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 211 LVGPNGIGKSTFLNLLKGE 229
L GP+G+GKS+ L+ L GE
Sbjct: 170 LAGPSGVGKSSILSRLTGE 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,617,123
Number of Sequences: 62578
Number of extensions: 388333
Number of successful extensions: 1972
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 316
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)