Query psy2684
Match_columns 356
No_of_seqs 309 out of 3420
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:32:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0488 Uup ATPase components 100.0 4.7E-63 1E-67 488.1 30.2 306 3-356 148-455 (530)
2 KOG0066|consensus 100.0 5E-59 1.1E-63 432.2 18.0 312 1-355 405-719 (807)
3 PRK10636 putative ABC transpor 100.0 2.1E-56 4.7E-61 456.5 33.1 303 2-356 143-446 (638)
4 PRK11147 ABC transporter ATPas 100.0 2.2E-55 4.8E-60 449.7 33.6 301 3-356 151-456 (635)
5 PLN03073 ABC transporter F fam 100.0 7.6E-54 1.6E-58 439.7 33.2 304 2-356 338-643 (718)
6 PRK15064 ABC transporter ATP-b 100.0 6.1E-53 1.3E-57 424.4 33.4 303 3-356 150-454 (530)
7 PRK11819 putative ABC transpor 100.0 6.5E-52 1.4E-56 418.6 34.0 299 3-356 158-461 (556)
8 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-51 2.3E-56 417.0 34.5 299 3-356 156-459 (552)
9 COG1123 ATPase components of v 100.0 8.6E-53 1.9E-57 408.5 22.0 275 3-356 149-445 (539)
10 KOG0927|consensus 100.0 2.7E-52 5.8E-57 396.9 23.0 306 1-355 214-524 (614)
11 KOG0062|consensus 100.0 2.8E-51 6E-56 388.0 14.4 304 1-355 191-497 (582)
12 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-48 5.5E-53 390.2 26.1 262 2-356 162-443 (520)
13 PRK15134 microcin C ABC transp 100.0 7.7E-49 1.7E-53 394.5 22.4 268 3-356 151-441 (529)
14 PRK10261 glutathione transport 100.0 3E-49 6.5E-54 403.5 19.6 296 2-356 162-479 (623)
15 PRK09700 D-allose transporter 100.0 4.7E-48 1E-52 387.3 22.1 266 2-356 139-425 (510)
16 PRK10938 putative molybdenum t 100.0 4.8E-48 1E-52 385.6 21.3 273 2-356 129-417 (490)
17 COG4172 ABC-type uncharacteriz 100.0 6.4E-48 1.4E-52 355.7 20.3 268 2-355 151-441 (534)
18 PRK13549 xylose transporter AT 100.0 7.1E-48 1.5E-52 385.6 21.4 266 2-356 137-421 (506)
19 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-47 2.6E-52 383.7 20.8 265 3-356 136-419 (500)
20 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-46 2.5E-51 376.8 22.1 270 2-356 134-419 (510)
21 PRK10762 D-ribose transporter 100.0 1.7E-46 3.8E-51 375.1 22.2 259 2-356 135-411 (501)
22 PRK11288 araG L-arabinose tran 100.0 2.7E-46 5.8E-51 373.8 21.8 262 2-356 134-412 (501)
23 PRK10982 galactose/methyl gala 100.0 1.5E-45 3.2E-50 367.7 23.3 263 2-356 128-407 (491)
24 PRK13409 putative ATPase RIL; 100.0 4.1E-45 8.9E-50 368.9 24.6 258 2-356 206-469 (590)
25 KOG0055|consensus 100.0 4E-36 8.7E-41 311.7 17.1 142 180-356 988-1142(1228)
26 COG3845 ABC-type uncharacteriz 100.0 1.3E-34 2.9E-39 274.8 17.3 267 2-355 134-418 (501)
27 COG1126 GlnQ ABC-type polar am 100.0 1.7E-35 3.7E-40 254.0 9.7 144 178-356 1-152 (240)
28 COG1129 MglA ABC-type sugar tr 100.0 2.9E-34 6.4E-39 277.5 19.3 262 3-356 140-417 (500)
29 PLN03232 ABC transporter C fam 100.0 2.2E-33 4.8E-38 309.6 24.7 143 179-356 1234-1387(1495)
30 PTZ00243 ABC transporter; Prov 100.0 7E-33 1.5E-37 305.6 28.3 143 179-356 1308-1461(1560)
31 PLN03130 ABC transporter C fam 100.0 7.1E-33 1.5E-37 306.0 27.7 143 179-356 1237-1390(1622)
32 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-32 3.3E-37 303.3 28.1 144 178-356 1283-1437(1522)
33 PTZ00265 multidrug resistance 100.0 2.4E-32 5.3E-37 299.3 26.4 78 3-81 574-655 (1466)
34 COG1245 Predicted ATPase, RNas 100.0 6.9E-33 1.5E-37 259.6 16.7 257 2-356 207-471 (591)
35 COG1116 TauB ABC-type nitrate/ 100.0 1.8E-33 3.9E-38 248.1 11.4 138 178-356 2-146 (248)
36 PRK00349 uvrA excinuclease ABC 100.0 3.1E-31 6.6E-36 277.0 26.1 162 2-226 483-655 (943)
37 COG1136 SalX ABC-type antimicr 100.0 1.1E-32 2.3E-37 242.9 10.9 148 179-356 1-158 (226)
38 COG3842 PotA ABC-type spermidi 100.0 1.2E-32 2.5E-37 257.6 11.3 142 177-356 3-152 (352)
39 COG2884 FtsE Predicted ATPase 100.0 9.3E-33 2E-37 232.2 9.3 146 179-356 1-153 (223)
40 TIGR00630 uvra excinuclease AB 100.0 1.4E-30 3.1E-35 271.6 26.6 160 2-224 481-651 (924)
41 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7E-32 1.5E-36 241.0 12.9 142 178-356 3-155 (254)
42 PRK00635 excinuclease ABC subu 100.0 1.4E-30 3.1E-35 282.6 25.4 159 2-224 470-639 (1809)
43 TIGR01271 CFTR_protein cystic 100.0 4.7E-30 1E-34 282.9 29.2 142 179-356 1217-1369(1490)
44 COG3638 ABC-type phosphate/pho 100.0 1.7E-32 3.7E-37 238.4 6.3 147 178-356 2-163 (258)
45 COG3839 MalK ABC-type sugar tr 100.0 9.1E-32 2E-36 250.3 11.0 140 179-356 3-149 (338)
46 COG1124 DppF ABC-type dipeptid 100.0 2.1E-31 4.5E-36 233.1 11.6 148 178-356 2-157 (252)
47 TIGR00956 3a01205 Pleiotropic 100.0 1E-29 2.2E-34 278.3 27.6 139 179-356 759-917 (1394)
48 COG1135 AbcC ABC-type metal io 100.0 7.7E-32 1.7E-36 242.7 8.6 146 179-356 1-157 (339)
49 COG1125 OpuBA ABC-type proline 100.0 7.3E-32 1.6E-36 236.4 6.2 142 179-356 1-151 (309)
50 COG1120 FepC ABC-type cobalami 100.0 7.5E-31 1.6E-35 235.5 8.5 142 179-356 2-154 (258)
51 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-30 2.6E-35 227.5 9.4 147 177-355 6-160 (263)
52 KOG0054|consensus 100.0 1.2E-28 2.6E-33 261.5 23.7 145 177-356 1136-1291(1381)
53 COG1118 CysA ABC-type sulfate/ 100.0 7.7E-30 1.7E-34 229.4 9.1 142 179-355 2-152 (345)
54 PLN03140 ABC transporter G fam 100.0 1.1E-27 2.5E-32 261.8 24.7 140 179-356 867-1035(1470)
55 COG0411 LivG ABC-type branched 100.0 1.8E-29 4E-34 221.1 8.5 145 177-356 2-165 (250)
56 COG1137 YhbG ABC-type (unclass 100.0 1.3E-29 2.7E-34 214.9 6.3 144 178-356 3-155 (243)
57 PRK11650 ugpC glycerol-3-phosp 100.0 1.8E-28 3.8E-33 234.1 11.4 141 179-356 3-150 (356)
58 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-28 2.5E-33 221.0 9.3 145 178-355 2-153 (235)
59 PRK11432 fbpC ferric transport 100.0 2.4E-28 5.3E-33 232.5 12.0 142 177-356 4-152 (351)
60 PRK09452 potA putrescine/sperm 100.0 2.4E-28 5.2E-33 234.2 11.6 143 176-356 11-160 (375)
61 COG4181 Predicted ABC-type tra 100.0 1.2E-28 2.5E-33 204.1 8.0 146 179-355 6-161 (228)
62 TIGR03265 PhnT2 putative 2-ami 100.0 2.8E-28 6.1E-33 232.4 11.3 141 178-356 3-150 (353)
63 TIGR02314 ABC_MetN D-methionin 99.9 4.6E-28 1E-32 229.6 10.9 146 179-356 1-156 (343)
64 TIGR00960 3a0501s02 Type II (G 99.9 4.2E-28 9.2E-33 216.7 8.8 146 179-356 1-154 (216)
65 COG0410 LivF ABC-type branched 99.9 4.5E-28 9.7E-33 210.8 8.3 145 178-356 2-152 (237)
66 PRK13537 nodulation ABC transp 99.9 1.1E-27 2.3E-32 224.8 11.5 143 177-356 5-154 (306)
67 COG1131 CcmA ABC-type multidru 99.9 1.3E-27 2.8E-32 222.5 11.3 142 179-356 4-152 (293)
68 COG3840 ThiQ ABC-type thiamine 99.9 3.6E-28 7.7E-33 203.1 6.6 137 180-356 2-145 (231)
69 PRK11607 potG putrescine trans 99.9 1.6E-27 3.4E-32 228.9 12.0 142 177-356 17-165 (377)
70 cd03259 ABC_Carb_Solutes_like 99.9 1.4E-27 3E-32 212.9 10.7 139 180-356 1-146 (213)
71 cd03261 ABC_Org_Solvent_Resist 99.9 1.6E-27 3.4E-32 215.8 11.0 144 180-356 1-152 (235)
72 PRK10851 sulfate/thiosulfate t 99.9 1.7E-27 3.6E-32 227.1 11.5 140 179-356 2-152 (353)
73 COG1117 PstB ABC-type phosphat 99.9 5.5E-28 1.2E-32 207.0 6.6 145 177-355 5-164 (253)
74 PRK11629 lolD lipoprotein tran 99.9 1.5E-27 3.2E-32 215.7 9.7 149 177-356 3-161 (233)
75 TIGR03258 PhnT 2-aminoethylpho 99.9 2.3E-27 5.1E-32 226.5 11.3 139 180-356 6-153 (362)
76 PRK11000 maltose/maltodextrin 99.9 3E-27 6.4E-32 227.0 12.0 140 179-356 3-149 (369)
77 PRK11247 ssuB aliphatic sulfon 99.9 3.9E-27 8.5E-32 215.6 12.1 139 177-356 10-149 (257)
78 PRK13536 nodulation factor exp 99.9 3.2E-27 7E-32 224.1 11.8 144 176-356 38-188 (340)
79 PRK15079 oligopeptide ABC tran 99.9 2E-27 4.4E-32 224.8 10.1 151 177-356 6-177 (331)
80 TIGR02673 FtsE cell division A 99.9 1.9E-27 4.2E-32 212.2 9.3 146 179-356 1-153 (214)
81 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.2E-27 4.7E-32 212.4 9.6 146 180-356 1-156 (218)
82 PRK11308 dppF dipeptide transp 99.9 2.6E-27 5.7E-32 223.8 10.6 151 177-356 3-170 (327)
83 cd03265 ABC_DrrA DrrA is the A 99.9 2.1E-27 4.6E-32 212.8 9.2 140 180-356 1-147 (220)
84 TIGR01288 nodI ATP-binding ABC 99.9 3.8E-27 8.3E-32 221.0 11.2 142 178-356 3-151 (303)
85 cd03226 ABC_cobalt_CbiO_domain 99.9 4.3E-27 9.4E-32 208.6 10.1 138 182-356 2-142 (205)
86 cd03266 ABC_NatA_sodium_export 99.9 3.3E-27 7.2E-32 211.2 9.3 141 179-356 1-152 (218)
87 cd03293 ABC_NrtD_SsuB_transpor 99.9 7.2E-27 1.6E-31 209.4 11.4 137 180-356 1-147 (220)
88 cd03296 ABC_CysA_sulfate_impor 99.9 8.3E-27 1.8E-31 211.6 11.8 140 179-356 2-152 (239)
89 cd03268 ABC_BcrA_bacitracin_re 99.9 5E-27 1.1E-31 208.6 10.2 139 180-356 1-142 (208)
90 COG1126 GlnQ ABC-type polar am 99.9 6.7E-27 1.5E-31 201.1 10.3 94 2-95 130-226 (240)
91 PRK11248 tauB taurine transpor 99.9 1E-26 2.2E-31 212.9 12.3 137 179-356 1-144 (255)
92 PRK13543 cytochrome c biogenes 99.9 1.4E-26 3.1E-31 206.6 12.9 143 175-356 7-153 (214)
93 PRK13538 cytochrome c biogenes 99.9 6.3E-27 1.4E-31 207.3 10.5 141 179-356 1-145 (204)
94 cd03219 ABC_Mj1267_LivG_branch 99.9 6.1E-27 1.3E-31 212.0 10.2 142 180-356 1-159 (236)
95 PRK11831 putative ABC transpor 99.9 8.6E-27 1.9E-31 215.1 11.3 147 177-356 5-159 (269)
96 PRK11153 metN DL-methionine tr 99.9 5.5E-27 1.2E-31 223.3 10.3 146 179-356 1-156 (343)
97 cd03301 ABC_MalK_N The N-termi 99.9 6.8E-27 1.5E-31 208.5 10.1 139 180-356 1-146 (213)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.1E-26 2.4E-31 210.4 11.4 141 179-356 1-148 (236)
99 COG4525 TauB ABC-type taurine 99.9 1.1E-26 2.3E-31 196.3 10.4 136 179-355 3-147 (259)
100 cd03258 ABC_MetN_methionine_tr 99.9 7.3E-27 1.6E-31 211.2 9.9 145 179-356 1-156 (233)
101 PRK09536 btuD corrinoid ABC tr 99.9 6.4E-27 1.4E-31 225.8 10.0 143 178-356 2-155 (402)
102 COG4598 HisP ABC-type histidin 99.9 9.7E-28 2.1E-32 200.1 3.7 155 178-356 5-168 (256)
103 PRK13540 cytochrome c biogenes 99.9 1.2E-26 2.5E-31 205.0 10.9 141 179-356 1-143 (200)
104 PRK13647 cbiO cobalt transport 99.9 4.7E-27 1E-31 217.3 8.7 145 178-356 3-154 (274)
105 cd03235 ABC_Metallic_Cations A 99.9 6E-27 1.3E-31 208.9 8.9 136 182-356 2-148 (213)
106 cd03269 ABC_putative_ATPase Th 99.9 7.2E-27 1.6E-31 207.9 9.4 137 180-356 1-144 (210)
107 cd03231 ABC_CcmA_heme_exporter 99.9 1.6E-26 3.4E-31 204.3 11.4 140 180-356 1-141 (201)
108 PRK13631 cbiO cobalt transport 99.9 1.1E-26 2.3E-31 219.0 10.9 164 175-356 17-192 (320)
109 PRK10908 cell division protein 99.9 1.3E-26 2.9E-31 207.9 11.0 146 179-356 1-153 (222)
110 PRK10584 putative ABC transpor 99.9 1.1E-26 2.4E-31 209.3 10.4 148 178-356 5-162 (228)
111 TIGR01189 ccmA heme ABC export 99.9 1.1E-26 2.5E-31 204.7 10.2 140 180-356 1-143 (198)
112 TIGR02211 LolD_lipo_ex lipopro 99.9 1.5E-26 3.2E-31 207.4 10.8 147 179-356 1-157 (221)
113 TIGR02315 ABC_phnC phosphonate 99.9 6.8E-27 1.5E-31 212.7 8.7 146 179-356 1-161 (243)
114 cd03263 ABC_subfamily_A The AB 99.9 8.5E-27 1.8E-31 208.9 9.0 141 180-356 1-149 (220)
115 TIGR03522 GldA_ABC_ATP gliding 99.9 1.7E-26 3.8E-31 216.3 11.2 141 179-356 2-149 (301)
116 cd03218 ABC_YhbG The ABC trans 99.9 1.7E-26 3.7E-31 208.5 10.5 142 180-356 1-149 (232)
117 PRK13548 hmuV hemin importer A 99.9 2.4E-26 5.3E-31 210.8 11.6 142 179-356 2-150 (258)
118 PRK13643 cbiO cobalt transport 99.9 1.5E-26 3.2E-31 215.5 10.3 149 179-356 1-160 (288)
119 cd03292 ABC_FtsE_transporter F 99.9 7.4E-27 1.6E-31 208.4 7.8 145 180-356 1-152 (214)
120 PRK15112 antimicrobial peptide 99.9 2E-26 4.4E-31 212.4 11.0 147 178-356 3-165 (267)
121 cd03257 ABC_NikE_OppD_transpor 99.9 3E-26 6.6E-31 206.3 11.8 149 179-356 1-161 (228)
122 PRK10247 putative ABC transpor 99.9 2.3E-26 5.1E-31 206.8 10.9 144 177-356 5-153 (225)
123 cd03260 ABC_PstB_phosphate_tra 99.9 1.3E-26 2.7E-31 208.8 9.1 143 180-356 1-157 (227)
124 PRK11022 dppD dipeptide transp 99.9 1.7E-26 3.6E-31 218.4 10.2 150 179-356 3-169 (326)
125 TIGR03411 urea_trans_UrtD urea 99.9 2.7E-26 5.8E-31 208.6 11.1 144 178-356 1-159 (242)
126 PRK13637 cbiO cobalt transport 99.9 2.2E-26 4.8E-31 214.2 10.6 145 180-356 3-160 (287)
127 cd03256 ABC_PhnC_transporter A 99.9 1.4E-26 3.1E-31 210.3 9.0 145 180-356 1-160 (241)
128 cd03225 ABC_cobalt_CbiO_domain 99.9 1.3E-26 2.8E-31 206.4 8.6 141 182-356 2-150 (211)
129 cd03262 ABC_HisP_GlnQ_permease 99.9 1.5E-26 3.4E-31 206.1 8.9 143 180-356 1-151 (213)
130 PRK10070 glycine betaine trans 99.9 2.5E-26 5.4E-31 221.5 11.0 145 180-356 29-180 (400)
131 PRK15093 antimicrobial peptide 99.9 2E-26 4.4E-31 218.3 10.2 151 178-356 2-174 (330)
132 PRK10575 iron-hydroxamate tran 99.9 2.1E-26 4.5E-31 212.2 9.8 145 176-356 8-163 (265)
133 PRK10895 lipopolysaccharide AB 99.9 2.5E-26 5.3E-31 208.8 10.2 143 179-356 3-153 (241)
134 PRK13539 cytochrome c biogenes 99.9 3.9E-26 8.5E-31 202.7 11.2 139 179-356 2-143 (207)
135 PRK14250 phosphate ABC transpo 99.9 2.9E-26 6.4E-31 208.3 10.6 142 179-356 3-147 (241)
136 PRK09473 oppD oligopeptide tra 99.9 2.4E-26 5.2E-31 217.5 10.3 153 176-356 9-177 (330)
137 PRK13636 cbiO cobalt transport 99.9 3E-26 6.6E-31 212.9 10.8 148 177-356 3-157 (283)
138 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.9E-26 6.3E-31 208.4 10.4 142 180-356 1-151 (242)
139 PRK11300 livG leucine/isoleuci 99.9 3.1E-26 6.8E-31 209.8 10.6 145 177-356 3-169 (255)
140 PRK13650 cbiO cobalt transport 99.9 1.9E-26 4.2E-31 213.8 9.4 145 178-356 3-156 (279)
141 PRK13635 cbiO cobalt transport 99.9 2.9E-26 6.3E-31 212.6 10.3 146 177-356 3-156 (279)
142 PRK13651 cobalt transporter AT 99.9 2.9E-26 6.3E-31 214.8 10.4 163 179-356 2-181 (305)
143 TIGR02769 nickel_nikE nickel i 99.9 2.7E-26 5.9E-31 211.4 10.0 149 179-356 2-166 (265)
144 cd03224 ABC_TM1139_LivF_branch 99.9 2.2E-26 4.8E-31 206.4 9.2 142 180-356 1-148 (222)
145 PRK13644 cbiO cobalt transport 99.9 2.4E-26 5.1E-31 212.7 9.6 145 179-356 1-152 (274)
146 PRK13646 cbiO cobalt transport 99.9 1.7E-26 3.7E-31 214.9 8.6 148 180-356 3-161 (286)
147 PRK13634 cbiO cobalt transport 99.9 3E-26 6.6E-31 213.6 10.2 148 180-356 3-161 (290)
148 cd03264 ABC_drug_resistance_li 99.9 2.9E-26 6.3E-31 204.1 9.7 139 180-356 1-146 (211)
149 PRK09493 glnQ glutamine ABC tr 99.9 3.2E-26 6.9E-31 207.9 10.0 144 179-356 1-152 (240)
150 TIGR03608 L_ocin_972_ABC putat 99.9 2.3E-26 5E-31 204.0 8.4 143 182-356 1-150 (206)
151 PRK09544 znuC high-affinity zi 99.9 6.4E-26 1.4E-30 207.0 11.5 132 178-356 3-136 (251)
152 TIGR01186 proV glycine betaine 99.9 2.5E-26 5.5E-31 219.0 8.6 137 188-356 2-145 (363)
153 TIGR03740 galliderm_ABC gallid 99.9 9.3E-26 2E-30 202.6 11.7 137 180-356 1-140 (223)
154 PRK13632 cbiO cobalt transport 99.9 6.2E-26 1.3E-30 209.6 10.9 146 177-356 5-158 (271)
155 cd03298 ABC_ThiQ_thiamine_tran 99.9 5.6E-26 1.2E-30 202.3 10.1 137 180-356 1-144 (211)
156 PRK11701 phnK phosphonate C-P 99.9 4.4E-26 9.5E-31 209.2 9.7 150 178-356 5-167 (258)
157 PRK13641 cbiO cobalt transport 99.9 4.6E-26 1E-30 212.1 9.9 149 179-356 2-161 (287)
158 PRK11264 putative amino-acid A 99.9 1.1E-25 2.3E-30 205.7 12.1 150 179-356 3-160 (250)
159 TIGR00972 3a0107s01c2 phosphat 99.9 8.5E-26 1.8E-30 206.0 11.3 143 179-356 1-160 (247)
160 PRK13652 cbiO cobalt transport 99.9 7.8E-26 1.7E-30 209.6 11.2 145 178-356 2-153 (277)
161 PRK10253 iron-enterobactin tra 99.9 3.9E-26 8.5E-31 210.3 9.0 144 177-356 5-159 (265)
162 PRK10619 histidine/lysine/argi 99.9 6.7E-26 1.5E-30 207.9 10.5 158 177-356 3-168 (257)
163 TIGR02323 CP_lyasePhnK phospho 99.9 6E-26 1.3E-30 207.7 10.1 150 178-356 2-164 (253)
164 PRK13633 cobalt transporter AT 99.9 7.1E-26 1.5E-30 210.2 10.6 146 178-356 3-160 (280)
165 PRK13638 cbiO cobalt transport 99.9 5.7E-26 1.2E-30 209.9 9.9 145 179-356 1-152 (271)
166 COG0444 DppD ABC-type dipeptid 99.9 3.9E-26 8.5E-31 208.3 8.5 150 179-356 1-169 (316)
167 PRK13639 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 210.0 9.8 146 179-356 1-153 (275)
168 TIGR02868 CydC thiol reductant 99.9 3.9E-26 8.4E-31 230.2 8.9 142 179-356 334-486 (529)
169 PRK11124 artP arginine transpo 99.9 5.4E-26 1.2E-30 206.6 9.0 148 179-356 2-157 (242)
170 PRK14247 phosphate ABC transpo 99.9 1.5E-25 3.2E-30 204.8 11.7 143 179-356 3-162 (250)
171 PRK11231 fecE iron-dicitrate t 99.9 6.5E-26 1.4E-30 207.7 9.1 142 179-356 2-154 (255)
172 TIGR01978 sufC FeS assembly AT 99.9 1.3E-25 2.7E-30 204.3 10.9 143 180-356 1-160 (243)
173 PRK11144 modC molybdate transp 99.9 2E-25 4.3E-30 213.3 12.3 143 179-356 1-144 (352)
174 PRK13640 cbiO cobalt transport 99.9 1.2E-25 2.6E-30 208.8 10.5 146 177-356 3-159 (282)
175 cd03294 ABC_Pro_Gly_Bertaine T 99.9 9.1E-26 2E-30 208.3 9.5 144 181-356 26-176 (269)
176 TIGR03410 urea_trans_UrtE urea 99.9 8.9E-26 1.9E-30 203.7 9.1 142 180-356 1-147 (230)
177 PRK09984 phosphonate/organopho 99.9 1.3E-25 2.7E-30 206.6 9.8 148 178-356 3-168 (262)
178 TIGR01188 drrA daunorubicin re 99.9 7.8E-26 1.7E-30 212.1 8.6 132 188-356 2-140 (302)
179 PRK11614 livF leucine/isoleuci 99.9 1.2E-25 2.5E-30 203.8 9.4 144 178-356 4-153 (237)
180 PRK10771 thiQ thiamine transpo 99.9 2.5E-25 5.5E-30 201.0 11.5 138 179-356 1-145 (232)
181 PRK15439 autoinducer 2 ABC tra 99.9 2.3E-25 4.9E-30 223.3 12.2 145 177-356 9-156 (510)
182 COG4175 ProV ABC-type proline/ 99.9 4.6E-26 1E-30 205.5 6.4 131 195-356 43-180 (386)
183 PRK13648 cbiO cobalt transport 99.9 1.8E-25 3.8E-30 206.4 10.4 146 177-356 5-158 (269)
184 PRK10762 D-ribose transporter 99.9 1.7E-25 3.6E-30 224.0 11.1 144 178-356 3-157 (501)
185 PRK15056 manganese/iron transp 99.9 1.6E-25 3.5E-30 207.0 10.1 143 178-356 5-158 (272)
186 PRK13649 cbiO cobalt transport 99.9 1.6E-25 3.4E-30 208.0 10.0 148 180-356 3-161 (280)
187 PRK14242 phosphate transporter 99.9 2.7E-25 5.9E-30 203.4 11.5 146 177-356 4-165 (253)
188 TIGR01277 thiQ thiamine ABC tr 99.9 2.6E-25 5.6E-30 198.3 11.0 137 180-356 1-144 (213)
189 TIGR03005 ectoine_ehuA ectoine 99.9 1.2E-25 2.7E-30 205.5 9.1 154 180-356 1-162 (252)
190 TIGR02324 CP_lyasePhnL phospho 99.9 3E-25 6.5E-30 199.4 11.2 148 179-356 1-165 (224)
191 PRK10419 nikE nickel transport 99.9 2.2E-25 4.8E-30 205.6 10.4 150 178-356 2-167 (268)
192 PRK09700 D-allose transporter 99.9 1.7E-25 3.6E-30 224.5 10.3 144 178-356 4-161 (510)
193 PRK10418 nikD nickel transport 99.9 6.2E-25 1.3E-29 201.1 13.1 142 179-356 4-156 (254)
194 COG4559 ABC-type hemin transpo 99.9 1.3E-25 2.8E-30 192.2 7.8 141 179-355 1-150 (259)
195 PRK13549 xylose transporter AT 99.9 2.5E-25 5.4E-30 223.0 11.0 145 177-356 3-159 (506)
196 TIGR03873 F420-0_ABC_ATP propo 99.9 2E-25 4.2E-30 204.7 9.4 141 180-356 2-153 (256)
197 PRK14273 phosphate ABC transpo 99.9 3.7E-25 8E-30 202.6 11.1 146 177-356 5-166 (254)
198 PRK14254 phosphate ABC transpo 99.9 4.1E-25 8.8E-30 205.5 11.5 148 175-356 35-196 (285)
199 PRK00635 excinuclease ABC subu 99.9 1.5E-24 3.3E-29 236.0 17.6 177 2-240 803-991 (1809)
200 TIGR01166 cbiO cobalt transpor 99.9 2.4E-25 5.2E-30 195.0 9.2 134 191-356 3-143 (190)
201 PRK13541 cytochrome c biogenes 99.9 4.5E-25 9.7E-30 194.1 10.9 137 179-356 1-139 (195)
202 PRK13547 hmuV hemin importer A 99.9 2.4E-25 5.1E-30 205.5 9.5 142 179-356 1-161 (272)
203 TIGR02982 heterocyst_DevA ABC 99.9 1.9E-25 4E-30 200.2 8.5 146 179-356 1-157 (220)
204 PRK13642 cbiO cobalt transport 99.9 2.9E-25 6.4E-30 205.7 10.0 144 179-356 4-156 (277)
205 COG0488 Uup ATPase components 99.9 4.3E-25 9.4E-30 218.6 11.7 93 3-96 434-526 (530)
206 PRK10744 pstB phosphate transp 99.9 5.2E-25 1.1E-29 202.3 11.4 146 177-356 11-172 (260)
207 PRK14267 phosphate ABC transpo 99.9 4.9E-25 1.1E-29 201.6 11.0 146 178-356 3-165 (253)
208 COG1123 ATPase components of v 99.9 3.5E-25 7.5E-30 216.0 10.4 151 178-356 4-170 (539)
209 PRK11288 araG L-arabinose tran 99.9 4.8E-25 1E-29 220.6 11.6 144 178-356 3-156 (501)
210 PRK14268 phosphate ABC transpo 99.9 5.3E-25 1.2E-29 202.0 10.9 146 177-356 10-170 (258)
211 PRK14235 phosphate transporter 99.9 7E-25 1.5E-29 202.2 11.7 147 176-356 16-179 (267)
212 COG4619 ABC-type uncharacteriz 99.9 2.4E-26 5.1E-31 189.8 1.6 140 180-355 4-148 (223)
213 PRK14241 phosphate transporter 99.9 6.3E-25 1.4E-29 201.5 11.1 145 179-356 4-164 (258)
214 cd03300 ABC_PotA_N PotA is an 99.9 5.3E-25 1.1E-29 198.9 10.4 139 180-356 1-146 (232)
215 COG4555 NatA ABC-type Na+ tran 99.9 8.4E-26 1.8E-30 191.9 4.5 142 179-356 1-149 (245)
216 PRK14259 phosphate ABC transpo 99.9 6.6E-25 1.4E-29 202.6 10.8 146 177-356 11-170 (269)
217 COG2274 SunT ABC-type bacterio 99.9 4.6E-25 1E-29 225.1 10.7 143 179-356 471-625 (709)
218 cd03244 ABCC_MRP_domain2 Domai 99.9 3.4E-25 7.4E-30 198.6 8.7 142 180-356 3-155 (221)
219 COG4133 CcmA ABC-type transpor 99.9 3.3E-25 7.2E-30 186.5 7.9 141 179-356 2-146 (209)
220 PRK14248 phosphate ABC transpo 99.9 1E-24 2.2E-29 201.3 11.8 147 176-356 18-180 (268)
221 TIGR03415 ABC_choXWV_ATP choli 99.9 5.3E-25 1.1E-29 210.9 10.3 142 183-356 28-180 (382)
222 PRK14269 phosphate ABC transpo 99.9 5.1E-25 1.1E-29 200.7 9.6 142 179-356 2-158 (246)
223 PRK13645 cbiO cobalt transport 99.9 8E-25 1.7E-29 204.1 11.0 150 179-356 6-166 (289)
224 cd03299 ABC_ModC_like Archeal 99.9 6.5E-25 1.4E-29 198.7 10.1 138 180-356 1-145 (235)
225 TIGR02142 modC_ABC molybdenum 99.9 8.3E-25 1.8E-29 209.2 11.3 139 184-356 4-147 (354)
226 KOG0058|consensus 99.9 2.8E-25 6E-30 220.0 7.6 143 178-356 464-620 (716)
227 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-24 3.1E-29 194.2 11.5 145 181-356 2-156 (218)
228 COG1135 AbcC ABC-type metal io 99.9 1.1E-24 2.3E-29 196.7 10.4 97 2-98 135-235 (339)
229 TIGR02633 xylG D-xylose ABC tr 99.9 9.5E-25 2.1E-29 218.6 11.3 144 179-356 1-157 (500)
230 cd03245 ABCC_bacteriocin_expor 99.9 6E-25 1.3E-29 196.9 8.8 142 180-356 3-156 (220)
231 PRK14237 phosphate transporter 99.9 1.8E-24 3.8E-29 199.5 12.0 147 176-356 17-179 (267)
232 PRK14256 phosphate ABC transpo 99.9 1.8E-24 3.9E-29 197.8 12.0 145 179-356 4-164 (252)
233 COG1122 CbiO ABC-type cobalt t 99.9 9.7E-25 2.1E-29 195.6 9.8 88 2-90 132-223 (235)
234 PRK10261 glutathione transport 99.9 8.8E-25 1.9E-29 223.6 10.8 162 177-356 10-184 (623)
235 TIGR00968 3a0106s01 sulfate AB 99.9 1.3E-24 2.9E-29 196.9 10.8 139 180-356 1-146 (237)
236 cd03234 ABCG_White The White s 99.9 1.4E-24 3E-29 195.4 10.7 140 179-356 3-159 (226)
237 PRK14270 phosphate ABC transpo 99.9 1.5E-24 3.3E-29 198.2 11.1 146 177-356 2-163 (251)
238 KOG0057|consensus 99.9 8.4E-25 1.8E-29 210.0 9.8 142 179-356 351-503 (591)
239 cd03254 ABCC_Glucan_exporter_l 99.9 6.4E-25 1.4E-29 197.9 8.3 141 180-356 3-155 (229)
240 PRK15134 microcin C ABC transp 99.9 8.8E-25 1.9E-29 220.1 10.1 152 177-356 3-172 (529)
241 cd03248 ABCC_TAP TAP, the Tran 99.9 1.1E-24 2.3E-29 196.1 9.6 145 176-356 8-166 (226)
242 cd03297 ABC_ModC_molybdenum_tr 99.9 1.3E-24 2.9E-29 193.9 10.1 138 184-356 5-147 (214)
243 cd03233 ABC_PDR_domain1 The pl 99.9 1.9E-24 4E-29 191.2 10.8 126 179-356 3-134 (202)
244 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 8.3E-25 1.8E-29 226.8 9.7 143 179-356 451-604 (686)
245 PRK10790 putative multidrug tr 99.9 8.2E-25 1.8E-29 223.3 9.3 143 179-356 340-492 (592)
246 PRK14239 phosphate transporter 99.9 2.6E-24 5.6E-29 196.8 11.6 146 177-356 3-164 (252)
247 PRK14274 phosphate ABC transpo 99.9 2.1E-24 4.7E-29 198.1 11.1 147 176-356 9-171 (259)
248 PRK11174 cysteine/glutathione 99.9 7.6E-25 1.7E-29 223.4 9.0 141 179-356 349-501 (588)
249 CHL00131 ycf16 sulfate ABC tra 99.9 3.5E-24 7.6E-29 195.9 12.4 145 177-356 5-167 (252)
250 PRK14275 phosphate ABC transpo 99.9 1.8E-24 3.9E-29 201.3 10.4 146 176-356 36-198 (286)
251 PRK15064 ABC transporter ATP-b 99.9 2.8E-24 6E-29 216.6 12.4 132 179-356 1-171 (530)
252 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.5E-24 5.5E-29 191.1 10.7 136 178-356 5-141 (207)
253 PRK14271 phosphate ABC transpo 99.9 4.4E-24 9.5E-29 197.7 12.5 145 177-356 19-179 (276)
254 COG4988 CydD ABC-type transpor 99.9 2E-24 4.4E-29 210.0 10.6 143 179-356 320-472 (559)
255 COG4152 ABC-type uncharacteriz 99.9 1.6E-24 3.5E-29 189.1 8.9 137 179-355 2-145 (300)
256 COG4148 ModC ABC-type molybdat 99.9 6.9E-25 1.5E-29 194.8 6.6 129 197-356 15-144 (352)
257 COG4167 SapF ABC-type antimicr 99.9 1E-24 2.2E-29 182.6 7.1 146 178-355 3-164 (267)
258 PRK14240 phosphate transporter 99.9 3.4E-24 7.4E-29 195.7 11.3 144 179-356 3-162 (250)
259 COG4604 CeuD ABC-type enteroch 99.9 1.2E-25 2.7E-30 190.2 1.6 142 179-356 1-151 (252)
260 PRK14272 phosphate ABC transpo 99.9 4.1E-24 8.8E-29 195.5 11.7 145 179-356 4-164 (252)
261 PRK14265 phosphate ABC transpo 99.9 3.7E-24 7.9E-29 198.1 11.5 147 176-356 17-177 (274)
262 PRK14251 phosphate ABC transpo 99.9 2.5E-24 5.3E-29 196.8 10.2 145 178-356 3-163 (251)
263 PRK14238 phosphate transporter 99.9 2.6E-24 5.7E-29 198.7 10.4 146 176-356 21-183 (271)
264 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.5E-24 3.1E-29 200.2 8.6 140 180-356 3-154 (275)
265 PRK14262 phosphate ABC transpo 99.9 2.8E-24 6.1E-29 196.3 10.4 145 178-356 2-162 (250)
266 COG1119 ModF ABC-type molybden 99.9 6.2E-25 1.3E-29 192.7 5.7 148 176-356 28-187 (257)
267 cd03252 ABCC_Hemolysin The ABC 99.9 1.7E-24 3.7E-29 196.1 8.7 141 180-356 1-154 (237)
268 COG1129 MglA ABC-type sugar tr 99.9 2.9E-24 6.3E-29 208.2 10.6 145 176-355 5-160 (500)
269 PRK14245 phosphate ABC transpo 99.9 3E-24 6.6E-29 196.1 10.2 145 178-356 2-162 (250)
270 cd03250 ABCC_MRP_domain1 Domai 99.9 4.3E-24 9.2E-29 189.2 10.5 128 180-356 1-143 (204)
271 COG1132 MdlB ABC-type multidru 99.9 2.1E-24 4.6E-29 219.2 9.7 142 179-356 328-481 (567)
272 TIGR02857 CydD thiol reductant 99.9 2.4E-24 5.2E-29 217.2 9.9 143 179-356 320-474 (529)
273 PRK14264 phosphate ABC transpo 99.9 6.4E-24 1.4E-28 199.3 12.1 152 171-356 37-216 (305)
274 PRK14236 phosphate transporter 99.9 7E-24 1.5E-28 196.0 12.0 146 177-356 23-184 (272)
275 cd03230 ABC_DR_subfamily_A Thi 99.9 3.6E-24 7.7E-29 184.8 9.4 111 180-356 1-111 (173)
276 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.7E-24 3.7E-29 225.3 8.6 143 179-356 477-631 (710)
277 TIGR01193 bacteriocin_ABC ABC- 99.9 1.6E-24 3.4E-29 225.5 8.0 142 179-356 473-627 (708)
278 PRK10938 putative molybdenum t 99.9 1.5E-24 3.2E-29 216.7 7.5 143 179-356 3-151 (490)
279 PRK14249 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 193.7 11.5 145 178-356 3-163 (251)
280 PRK10982 galactose/methyl gala 99.9 3.5E-24 7.6E-29 214.0 10.1 140 182-356 1-150 (491)
281 COG1124 DppF ABC-type dipeptid 99.9 5.5E-24 1.2E-28 186.6 9.9 85 2-86 135-223 (252)
282 PRK14253 phosphate ABC transpo 99.9 6.5E-24 1.4E-28 193.8 10.8 143 179-356 3-161 (249)
283 PRK11160 cysteine/glutathione 99.9 3.1E-24 6.8E-29 218.0 9.6 144 178-356 337-491 (574)
284 COG4161 ArtP ABC-type arginine 99.9 1.6E-24 3.4E-29 178.0 5.9 147 180-356 3-157 (242)
285 PRK14255 phosphate ABC transpo 99.9 9.7E-24 2.1E-28 193.0 11.8 146 177-356 3-164 (252)
286 cd03267 ABC_NatA_like Similar 99.9 5.7E-24 1.2E-28 192.6 10.1 134 187-356 29-169 (236)
287 cd03251 ABCC_MsbA MsbA is an e 99.9 5.7E-24 1.2E-28 192.4 10.0 141 180-356 1-154 (234)
288 PRK14243 phosphate transporter 99.9 7E-24 1.5E-28 195.2 10.7 145 178-356 9-167 (264)
289 cd03253 ABCC_ATM1_transporter 99.9 3.8E-24 8.1E-29 193.8 8.8 141 180-356 1-153 (236)
290 PRK14260 phosphate ABC transpo 99.9 8.2E-24 1.8E-28 194.3 11.1 145 178-356 6-166 (259)
291 COG3845 ABC-type uncharacteriz 99.9 2.4E-24 5.2E-29 205.1 7.8 144 178-356 3-156 (501)
292 PRK09580 sufC cysteine desulfu 99.9 8.3E-24 1.8E-28 192.9 11.1 144 179-356 1-161 (248)
293 cd03223 ABCD_peroxisomal_ALDP 99.9 8.2E-24 1.8E-28 181.3 10.3 107 180-356 1-107 (166)
294 PRK11176 lipid transporter ATP 99.9 2.5E-24 5.4E-29 219.5 8.1 143 179-356 341-496 (582)
295 TIGR00958 3a01208 Conjugate Tr 99.9 3.7E-24 7.9E-29 222.4 9.4 143 179-356 478-633 (711)
296 PRK14261 phosphate ABC transpo 99.9 1E-23 2.2E-28 193.0 11.0 146 177-356 4-165 (253)
297 PRK14258 phosphate ABC transpo 99.9 1E-23 2.2E-28 193.9 10.9 144 179-356 7-166 (261)
298 COG4608 AppF ABC-type oligopep 99.9 4.3E-24 9.4E-29 191.0 8.2 115 178-356 3-125 (268)
299 COG0178 UvrA Excinuclease ATPa 99.9 4.6E-22 9.9E-27 198.4 23.1 159 2-224 475-645 (935)
300 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.9E-24 1.1E-28 193.3 8.2 141 180-356 1-155 (238)
301 cd03215 ABC_Carb_Monos_II This 99.9 9.3E-24 2E-28 183.7 9.5 118 177-356 2-120 (182)
302 TIGR03375 type_I_sec_LssB type 99.9 4.2E-24 9.1E-29 221.9 8.5 143 179-356 463-617 (694)
303 PRK14244 phosphate ABC transpo 99.9 7.6E-24 1.7E-28 193.6 9.2 143 180-356 6-165 (251)
304 PRK14246 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 193.1 10.0 151 177-356 8-169 (257)
305 cd03229 ABC_Class3 This class 99.9 6.5E-24 1.4E-28 184.1 8.0 116 180-356 1-116 (178)
306 COG1127 Ttg2A ABC-type transpo 99.9 1.8E-23 3.9E-28 182.7 10.7 92 2-94 139-234 (263)
307 PRK10636 putative ABC transpor 99.9 2.1E-23 4.6E-28 213.7 12.9 93 3-95 425-517 (638)
308 COG1118 CysA ABC-type sulfate/ 99.9 1.6E-23 3.5E-28 188.7 10.5 93 2-94 131-227 (345)
309 PRK11147 ABC transporter ATPas 99.9 2.1E-23 4.7E-28 214.0 12.8 93 3-95 435-528 (635)
310 PRK14263 phosphate ABC transpo 99.9 2E-23 4.3E-28 191.8 11.0 145 178-356 7-165 (261)
311 PRK13657 cyclic beta-1,2-gluca 99.9 7.5E-24 1.6E-28 216.1 9.0 142 179-356 334-487 (588)
312 COG4987 CydC ABC-type transpor 99.9 3.6E-24 7.7E-29 205.5 5.9 143 179-356 336-490 (573)
313 COG1120 FepC ABC-type cobalami 99.9 2.5E-23 5.4E-28 187.0 11.0 88 2-89 132-223 (258)
314 cd03213 ABCG_EPDR ABCG transpo 99.9 2E-23 4.3E-28 183.5 10.0 118 179-356 3-127 (194)
315 TIGR03269 met_CoM_red_A2 methy 99.9 2.2E-23 4.7E-28 209.7 11.6 167 180-356 1-184 (520)
316 PRK14257 phosphate ABC transpo 99.9 3.4E-23 7.5E-28 195.8 12.1 147 176-356 77-241 (329)
317 TIGR02203 MsbA_lipidA lipid A 99.9 8.1E-24 1.7E-28 215.3 8.1 143 179-356 330-485 (571)
318 cd03214 ABC_Iron-Siderophores_ 99.9 2.7E-24 5.9E-29 186.7 4.0 113 181-356 1-113 (180)
319 cd03247 ABCC_cytochrome_bd The 99.9 8.1E-24 1.8E-28 183.4 6.8 113 180-356 1-114 (178)
320 TIGR01184 ntrCD nitrate transp 99.9 3.3E-23 7.1E-28 186.9 10.9 121 196-356 1-130 (230)
321 cd03288 ABCC_SUR2 The SUR doma 99.9 1.5E-23 3.2E-28 192.3 8.6 144 177-356 17-172 (257)
322 PRK14252 phosphate ABC transpo 99.9 4.3E-23 9.3E-28 190.1 11.5 147 177-356 14-177 (265)
323 TIGR01842 type_I_sec_PrtD type 99.9 1.7E-23 3.8E-28 211.5 9.4 143 178-356 315-470 (544)
324 cd03246 ABCC_Protease_Secretio 99.9 1.6E-23 3.4E-28 180.8 7.7 111 180-356 1-112 (173)
325 TIGR02770 nickel_nikD nickel i 99.9 3.1E-23 6.7E-28 187.1 9.7 128 195-356 1-141 (230)
326 COG1125 OpuBA ABC-type proline 99.9 3.8E-23 8.2E-28 181.7 9.8 89 2-90 129-221 (309)
327 PRK10522 multidrug transporter 99.9 1.6E-23 3.5E-28 211.8 8.1 140 179-356 322-465 (547)
328 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.9E-23 6.2E-28 183.4 8.6 118 180-356 1-120 (200)
329 COG4136 ABC-type uncharacteriz 99.9 1.8E-23 3.9E-28 169.8 6.7 140 179-356 2-150 (213)
330 PRK14266 phosphate ABC transpo 99.9 3.5E-23 7.6E-28 189.1 9.5 144 179-356 3-162 (250)
331 COG4674 Uncharacterized ABC-ty 99.9 1.9E-23 4.1E-28 176.7 6.7 143 178-355 4-162 (249)
332 TIGR01257 rim_protein retinal- 99.9 5.2E-23 1.1E-27 227.5 11.8 144 177-356 926-1077(2272)
333 COG0444 DppD ABC-type dipeptid 99.9 5.4E-23 1.2E-27 187.8 9.7 100 3-102 148-251 (316)
334 cd03228 ABCC_MRP_Like The MRP 99.9 2.8E-23 6E-28 178.9 7.4 111 180-356 1-112 (171)
335 COG4107 PhnK ABC-type phosphon 99.9 2.2E-23 4.8E-28 173.3 6.3 157 176-356 3-167 (258)
336 TIGR01192 chvA glucan exporter 99.9 4.3E-23 9.3E-28 210.1 9.8 142 179-356 334-487 (585)
337 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.1E-23 8.9E-28 185.6 8.3 129 180-356 23-158 (224)
338 TIGR00954 3a01203 Peroxysomal 99.9 1E-22 2.3E-27 209.4 12.4 132 178-356 450-598 (659)
339 PRK03695 vitamin B12-transport 99.9 4.9E-23 1.1E-27 187.9 8.9 135 181-356 2-142 (248)
340 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.3E-22 2.9E-27 187.8 11.7 130 176-356 36-175 (282)
341 cd03232 ABC_PDR_domain2 The pl 99.9 6.1E-23 1.3E-27 180.1 8.9 117 179-356 3-124 (192)
342 TIGR02204 MsbA_rel ABC transpo 99.9 5.2E-23 1.1E-27 209.5 9.7 142 179-356 337-492 (576)
343 PRK11819 putative ABC transpor 99.9 2.9E-22 6.3E-27 202.8 15.0 97 2-98 439-536 (556)
344 PRK10789 putative multidrug tr 99.9 5E-23 1.1E-27 209.1 9.3 142 179-356 313-467 (569)
345 COG1116 TauB ABC-type nitrate/ 99.9 1E-22 2.2E-27 180.0 9.9 80 2-81 124-207 (248)
346 PF00005 ABC_tran: ABC transpo 99.9 5.9E-24 1.3E-28 176.1 2.0 121 196-356 1-124 (137)
347 COG1117 PstB ABC-type phosphat 99.9 6.4E-23 1.4E-27 176.0 8.4 97 2-98 143-241 (253)
348 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.5E-22 3.1E-27 181.2 11.0 91 2-94 133-226 (254)
349 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.1E-22 6.8E-27 202.5 14.7 96 2-97 437-533 (552)
350 COG4618 ArpD ABC-type protease 99.9 9.3E-23 2E-27 194.3 9.7 142 178-355 333-487 (580)
351 TIGR00960 3a0501s02 Type II (G 99.9 1.5E-22 3.2E-27 180.9 10.4 82 2-83 132-216 (216)
352 KOG0055|consensus 99.9 2.5E-23 5.4E-28 216.9 6.1 143 178-356 349-505 (1228)
353 TIGR01194 cyc_pep_trnsptr cycl 99.9 4.2E-23 9.1E-28 209.0 7.5 141 179-356 337-486 (555)
354 TIGR02314 ABC_MetN D-methionin 99.9 2E-22 4.4E-27 191.1 11.7 91 2-93 134-228 (343)
355 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.7E-22 3.6E-27 183.9 10.7 122 188-356 2-131 (246)
356 TIGR01846 type_I_sec_HlyB type 99.9 5.1E-23 1.1E-27 213.7 8.1 142 179-356 455-609 (694)
357 cd03261 ABC_Org_Solvent_Resist 99.9 3.3E-22 7.2E-27 181.0 11.9 91 2-93 130-224 (235)
358 cd03259 ABC_Carb_Solutes_like 99.9 2.9E-22 6.2E-27 178.7 11.2 83 3-85 125-211 (213)
359 PRK13651 cobalt transporter AT 99.9 3.2E-22 6.9E-27 187.5 12.0 90 2-92 159-251 (305)
360 cd03216 ABC_Carb_Monos_I This 99.9 8.5E-23 1.8E-27 174.5 7.1 64 180-244 1-64 (163)
361 TIGR01257 rim_protein retinal- 99.9 1.8E-22 3.8E-27 223.4 11.1 144 177-356 1935-2086(2272)
362 cd03226 ABC_cobalt_CbiO_domain 99.9 3.9E-22 8.5E-27 176.8 11.2 83 2-84 120-205 (205)
363 COG4172 ABC-type uncharacteriz 99.9 1.8E-22 4E-27 187.4 9.2 153 176-356 3-173 (534)
364 COG1136 SalX ABC-type antimicr 99.9 4.9E-22 1.1E-26 175.3 11.1 81 3-84 137-221 (226)
365 PLN03073 ABC transporter F fam 99.9 7.4E-22 1.6E-26 203.6 13.5 93 3-95 622-714 (718)
366 KOG0062|consensus 99.9 5.4E-22 1.2E-26 189.1 11.6 94 3-96 477-570 (582)
367 TIGR01188 drrA daunorubicin re 99.9 7.1E-22 1.5E-26 185.3 12.2 91 2-93 118-211 (302)
368 PRK13537 nodulation ABC transp 99.9 7.9E-22 1.7E-26 185.1 12.2 91 2-93 132-225 (306)
369 TIGR01288 nodI ATP-binding ABC 99.9 7.8E-22 1.7E-26 185.1 12.1 90 2-92 129-221 (303)
370 cd03256 ABC_PhnC_transporter A 99.9 1.3E-21 2.7E-26 177.8 13.1 91 2-93 138-232 (241)
371 cd03264 ABC_drug_resistance_li 99.9 8.4E-22 1.8E-26 175.4 11.1 83 3-85 125-209 (211)
372 PRK14250 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 178.3 12.0 89 3-91 126-218 (241)
373 PRK11432 fbpC ferric transport 99.9 9.5E-22 2.1E-26 187.4 11.9 89 2-91 130-222 (351)
374 cd03301 ABC_MalK_N The N-termi 99.9 1.1E-21 2.3E-26 174.9 11.4 85 2-86 124-212 (213)
375 PRK15093 antimicrobial peptide 99.9 1.3E-21 2.7E-26 185.6 12.4 89 3-92 153-245 (330)
376 TIGR02315 ABC_phnC phosphonate 99.9 1.3E-21 2.9E-26 177.9 11.9 90 2-92 139-232 (243)
377 cd03265 ABC_DrrA DrrA is the A 99.9 1.3E-21 2.7E-26 175.4 11.4 85 2-86 125-213 (220)
378 cd03257 ABC_NikE_OppD_transpor 99.9 1.2E-21 2.5E-26 176.5 11.2 83 3-85 140-226 (228)
379 PRK11650 ugpC glycerol-3-phosp 99.9 1.3E-21 2.9E-26 186.8 12.1 90 2-92 128-221 (356)
380 PRK11308 dppF dipeptide transp 99.9 1.6E-21 3.4E-26 184.5 12.4 89 2-91 148-240 (327)
381 TIGR03258 PhnT 2-aminoethylpho 99.9 1.3E-21 2.8E-26 187.0 11.9 89 2-91 131-224 (362)
382 PRK10619 histidine/lysine/argi 99.9 1.9E-21 4.2E-26 178.3 12.6 90 3-93 147-239 (257)
383 TIGR01184 ntrCD nitrate transp 99.9 1.1E-21 2.4E-26 177.0 10.8 85 2-86 108-196 (230)
384 PRK13643 cbiO cobalt transport 99.9 1.7E-21 3.6E-26 181.6 12.2 91 2-93 138-231 (288)
385 PRK13637 cbiO cobalt transport 99.9 1.9E-21 4.1E-26 181.1 12.5 91 2-93 138-232 (287)
386 PRK10535 macrolide transporter 99.9 5.2E-22 1.1E-26 204.0 9.5 148 178-356 3-160 (648)
387 KOG0063|consensus 99.9 1.2E-21 2.6E-26 182.9 10.9 79 2-80 207-288 (592)
388 PRK13545 tagH teichoic acids e 99.9 1.6E-21 3.4E-26 191.1 12.4 132 177-356 19-159 (549)
389 cd03297 ABC_ModC_molybdenum_tr 99.9 1.6E-21 3.5E-26 174.0 11.4 83 3-85 126-212 (214)
390 TIGR03265 PhnT2 putative 2-ami 99.9 1.5E-21 3.3E-26 186.3 11.9 88 2-89 128-219 (353)
391 PRK11831 putative ABC transpor 99.9 1.8E-21 3.8E-26 179.7 12.0 91 2-93 137-231 (269)
392 PRK11022 dppD dipeptide transp 99.9 1.6E-21 3.4E-26 184.4 11.9 88 3-91 148-239 (326)
393 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.6E-21 3.5E-26 174.7 11.3 84 2-85 125-214 (220)
394 PRK11000 maltose/maltodextrin 99.9 1.6E-21 3.5E-26 187.3 12.0 89 2-91 127-219 (369)
395 PRK13536 nodulation factor exp 99.9 1.9E-21 4.1E-26 184.7 12.2 91 2-93 166-259 (340)
396 cd03219 ABC_Mj1267_LivG_branch 99.9 1.7E-21 3.7E-26 176.4 11.4 90 2-92 137-229 (236)
397 PRK15079 oligopeptide ABC tran 99.9 1.8E-21 3.9E-26 184.3 12.0 90 2-92 155-248 (331)
398 KOG0056|consensus 99.9 9E-23 1.9E-27 193.0 3.1 143 179-356 537-690 (790)
399 cd03214 ABC_Iron-Siderophores_ 99.9 2.4E-21 5.1E-26 168.3 11.8 83 3-85 92-178 (180)
400 PRK09473 oppD oligopeptide tra 99.9 2E-21 4.3E-26 184.0 12.2 90 3-93 156-249 (330)
401 PRK13634 cbiO cobalt transport 99.9 2.4E-21 5.1E-26 180.7 12.5 91 2-93 139-233 (290)
402 cd03225 ABC_cobalt_CbiO_domain 99.9 1.4E-21 3E-26 174.0 10.5 81 2-82 128-211 (211)
403 PRK13647 cbiO cobalt transport 99.9 2E-21 4.3E-26 179.8 11.9 91 2-93 132-225 (274)
404 cd03296 ABC_CysA_sulfate_impor 99.9 1.6E-21 3.6E-26 176.9 11.1 90 2-92 130-223 (239)
405 PRK14255 phosphate ABC transpo 99.9 2.4E-21 5.2E-26 177.1 12.2 91 3-93 143-235 (252)
406 PRK09984 phosphonate/organopho 99.9 2.4E-21 5.3E-26 178.2 12.2 91 2-93 146-240 (262)
407 PRK13546 teichoic acids export 99.9 3.2E-21 6.8E-26 177.2 13.0 117 192-356 36-159 (264)
408 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.1E-21 4.6E-26 172.8 11.4 84 2-85 122-209 (211)
409 cd03266 ABC_NatA_sodium_export 99.9 1.5E-21 3.3E-26 174.6 10.3 83 3-85 131-216 (218)
410 PRK13631 cbiO cobalt transport 99.9 2.4E-21 5.3E-26 182.6 12.2 91 2-93 170-263 (320)
411 PRK11264 putative amino-acid A 99.9 2.7E-21 5.9E-26 176.6 12.2 91 2-93 138-231 (250)
412 PLN03211 ABC transporter G-25; 99.9 9.2E-22 2E-26 201.6 10.1 137 181-356 70-222 (659)
413 PTZ00265 multidrug resistance 99.9 4.2E-22 9E-27 219.0 8.0 143 179-356 382-595 (1466)
414 cd03268 ABC_BcrA_bacitracin_re 99.9 1.6E-21 3.4E-26 173.3 10.2 83 3-85 121-206 (208)
415 TIGR02673 FtsE cell division A 99.9 1.6E-21 3.4E-26 174.0 10.2 80 3-82 132-214 (214)
416 PRK11153 metN DL-methionine tr 99.9 2.3E-21 4.9E-26 184.7 12.0 90 2-92 134-227 (343)
417 PRK10851 sulfate/thiosulfate t 99.9 2.3E-21 5E-26 185.0 12.0 90 2-92 130-223 (353)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.3E-21 2.8E-26 175.1 9.6 80 3-83 135-218 (218)
419 PRK13645 cbiO cobalt transport 99.9 2.5E-21 5.4E-26 180.5 12.0 90 2-92 144-237 (289)
420 COG4778 PhnL ABC-type phosphon 99.9 1.3E-22 2.7E-27 168.1 2.8 151 179-355 4-167 (235)
421 PRK11247 ssuB aliphatic sulfon 99.9 2.6E-21 5.7E-26 177.2 11.8 83 3-85 128-214 (257)
422 PRK13641 cbiO cobalt transport 99.9 3E-21 6.5E-26 179.8 12.4 91 2-93 139-232 (287)
423 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.3E-21 7.2E-26 177.9 12.6 91 2-93 154-248 (269)
424 PRK13638 cbiO cobalt transport 99.9 2.8E-21 6E-26 178.6 12.0 91 2-93 130-223 (271)
425 cd03235 ABC_Metallic_Cations A 99.9 1.9E-21 4.1E-26 173.4 10.5 81 2-82 126-209 (213)
426 PRK09536 btuD corrinoid ABC tr 99.9 2.9E-21 6.4E-26 186.5 12.6 91 2-93 133-226 (402)
427 PRK09452 potA putrescine/sperm 99.9 2.6E-21 5.6E-26 185.7 12.0 87 2-88 138-228 (375)
428 TIGR03522 GldA_ABC_ATP gliding 99.9 3.1E-21 6.7E-26 180.9 12.2 91 2-93 127-219 (301)
429 PRK10771 thiQ thiamine transpo 99.9 4.3E-21 9.2E-26 173.4 12.7 92 2-94 123-218 (232)
430 cd03218 ABC_YhbG The ABC trans 99.9 3.1E-21 6.7E-26 174.2 11.7 91 2-93 127-220 (232)
431 cd03269 ABC_putative_ATPase Th 99.9 2.4E-21 5.2E-26 172.3 10.7 84 3-86 123-209 (210)
432 PRK14245 phosphate ABC transpo 99.9 4.2E-21 9.1E-26 175.4 12.4 90 3-93 141-232 (250)
433 cd03258 ABC_MetN_methionine_tr 99.9 3.9E-21 8.4E-26 173.7 12.1 90 2-92 134-227 (233)
434 PRK14239 phosphate transporter 99.9 3.5E-21 7.5E-26 176.1 11.8 89 3-92 143-233 (252)
435 PRK09493 glnQ glutamine ABC tr 99.9 3.7E-21 8E-26 174.7 11.8 91 2-93 130-223 (240)
436 cd03292 ABC_FtsE_transporter F 99.9 2.1E-21 4.6E-26 173.1 10.1 81 3-83 131-214 (214)
437 PRK11607 potG putrescine trans 99.9 3.3E-21 7.2E-26 185.2 12.1 87 2-88 143-233 (377)
438 COG1101 PhnK ABC-type uncharac 99.9 5.6E-22 1.2E-26 170.3 6.0 144 180-356 2-164 (263)
439 PRK13646 cbiO cobalt transport 99.9 3.9E-21 8.4E-26 178.9 12.2 90 3-93 140-233 (286)
440 PRK10908 cell division protein 99.9 3.5E-21 7.5E-26 172.8 11.4 83 3-85 132-217 (222)
441 TIGR01978 sufC FeS assembly AT 99.9 4.5E-21 9.8E-26 174.3 12.1 90 3-93 138-232 (243)
442 TIGR01187 potA spermidine/putr 99.9 3.9E-21 8.4E-26 181.9 12.1 90 2-92 94-187 (325)
443 TIGR02211 LolD_lipo_ex lipopro 99.9 3E-21 6.5E-26 173.0 10.8 82 2-84 135-220 (221)
444 PRK11124 artP arginine transpo 99.9 4E-21 8.7E-26 174.6 11.7 91 2-93 135-228 (242)
445 TIGR01186 proV glycine betaine 99.9 4.5E-21 9.7E-26 183.0 12.5 91 2-93 123-217 (363)
446 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.6E-21 3.5E-26 163.1 8.3 61 180-241 1-61 (144)
447 PRK14248 phosphate ABC transpo 99.9 4.7E-21 1E-25 176.8 12.2 90 3-93 159-250 (268)
448 cd03295 ABC_OpuCA_Osmoprotecti 99.8 4.5E-21 9.7E-26 174.3 11.8 89 3-92 130-222 (242)
449 PRK14242 phosphate transporter 99.8 5E-21 1.1E-25 175.2 12.1 90 3-93 144-235 (253)
450 PRK11248 tauB taurine transpor 99.8 3.7E-21 8E-26 176.1 11.2 84 2-85 122-211 (255)
451 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.3E-21 2.9E-26 178.8 8.2 139 183-356 4-155 (255)
452 TIGR03771 anch_rpt_ABC anchore 99.8 1.8E-21 4E-26 174.7 9.0 118 201-356 1-129 (223)
453 TIGR02323 CP_lyasePhnK phospho 99.8 5E-21 1.1E-25 175.2 12.0 91 2-93 142-236 (253)
454 PRK13649 cbiO cobalt transport 99.8 4.3E-21 9.4E-26 178.2 11.7 91 2-93 139-232 (280)
455 PRK14268 phosphate ABC transpo 99.8 4.7E-21 1E-25 175.9 11.8 90 2-92 148-239 (258)
456 TIGR03411 urea_trans_UrtD urea 99.8 5.5E-21 1.2E-25 173.7 12.2 91 2-93 137-229 (242)
457 TIGR02770 nickel_nikD nickel i 99.8 5.1E-21 1.1E-25 172.6 11.8 91 2-93 119-213 (230)
458 PRK11300 livG leucine/isoleuci 99.8 5.2E-21 1.1E-25 175.3 12.1 91 2-93 147-241 (255)
459 PRK15112 antimicrobial peptide 99.8 5.2E-21 1.1E-25 176.4 12.1 91 3-94 144-238 (267)
460 cd03262 ABC_HisP_GlnQ_permease 99.8 3.1E-21 6.8E-26 171.9 10.2 82 2-83 129-213 (213)
461 TIGR00972 3a0107s01c2 phosphat 99.8 6.1E-21 1.3E-25 174.0 12.4 90 3-93 139-230 (247)
462 PRK11144 modC molybdate transp 99.8 4.4E-21 9.6E-26 183.4 11.9 88 2-90 122-213 (352)
463 cd03224 ABC_TM1139_LivF_branch 99.8 4.6E-21 1E-25 171.9 11.4 89 2-91 126-217 (222)
464 PRK11701 phnK phosphonate C-P 99.8 5.7E-21 1.2E-25 175.3 12.2 89 3-92 146-238 (258)
465 cd03267 ABC_NatA_like Similar 99.8 4.5E-21 9.8E-26 173.7 11.3 84 2-85 147-234 (236)
466 PRK14269 phosphate ABC transpo 99.8 5.8E-21 1.3E-25 174.0 12.0 89 2-91 136-226 (246)
467 PRK14273 phosphate ABC transpo 99.8 7E-21 1.5E-25 174.3 12.5 91 2-93 144-236 (254)
468 PRK11231 fecE iron-dicitrate t 99.8 5.5E-21 1.2E-25 175.1 11.8 91 2-93 132-225 (255)
469 cd03216 ABC_Carb_Monos_I This 99.8 6.9E-21 1.5E-25 162.7 11.5 78 8-85 82-162 (163)
470 PRK14272 phosphate ABC transpo 99.8 7.1E-21 1.5E-25 174.0 12.4 90 3-93 143-234 (252)
471 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 5.5E-21 1.2E-25 171.7 11.4 84 2-85 136-222 (224)
472 PRK13546 teichoic acids export 99.8 1.8E-20 3.8E-25 172.3 14.9 93 2-95 137-232 (264)
473 PRK13636 cbiO cobalt transport 99.8 8.6E-21 1.9E-25 176.3 13.0 92 2-94 135-230 (283)
474 cd03260 ABC_PstB_phosphate_tra 99.8 6E-21 1.3E-25 171.8 11.6 81 6-86 139-221 (227)
475 PRK14247 phosphate ABC transpo 99.8 7E-21 1.5E-25 173.9 12.1 91 2-93 140-232 (250)
476 PRK14251 phosphate ABC transpo 99.8 6.6E-21 1.4E-25 174.2 11.8 88 3-91 142-231 (251)
477 COG4598 HisP ABC-type histidin 99.8 3.6E-21 7.9E-26 160.9 9.1 94 2-95 146-242 (256)
478 COG4175 ProV ABC-type proline/ 99.8 5.9E-21 1.3E-25 172.6 11.0 89 3-92 159-251 (386)
479 COG4555 NatA ABC-type Na+ tran 99.8 5E-21 1.1E-25 162.9 10.0 91 2-93 127-220 (245)
480 TIGR03410 urea_trans_UrtE urea 99.8 6.5E-21 1.4E-25 171.9 11.4 90 2-92 125-218 (230)
481 COG3839 MalK ABC-type sugar tr 99.8 3E-21 6.4E-26 180.0 9.4 96 1-96 126-225 (338)
482 PRK10575 iron-hydroxamate tran 99.8 8.4E-21 1.8E-25 174.9 12.3 90 2-92 141-234 (265)
483 TIGR02769 nickel_nikE nickel i 99.8 7.4E-21 1.6E-25 175.2 11.9 91 2-93 144-238 (265)
484 PRK14240 phosphate transporter 99.8 7.4E-21 1.6E-25 173.7 11.7 89 3-92 141-231 (250)
485 PRK10253 iron-enterobactin tra 99.8 9.8E-21 2.1E-25 174.4 12.6 90 2-92 137-230 (265)
486 COG3842 PotA ABC-type spermidi 99.8 2E-21 4.3E-26 182.1 7.7 95 2-96 130-228 (352)
487 TIGR01277 thiQ thiamine ABC tr 99.8 8.9E-21 1.9E-25 169.1 11.5 85 2-86 122-210 (213)
488 COG1131 CcmA ABC-type multidru 99.8 9.7E-21 2.1E-25 176.3 12.2 89 3-92 131-223 (293)
489 TIGR03873 F420-0_ABC_ATP propo 99.8 9.4E-21 2E-25 173.7 11.9 91 2-93 131-224 (256)
490 PRK14270 phosphate ABC transpo 99.8 9.8E-21 2.1E-25 173.0 12.0 88 3-91 142-231 (251)
491 PRK14267 phosphate ABC transpo 99.8 1.1E-20 2.3E-25 173.0 12.2 90 2-92 143-234 (253)
492 TIGR03005 ectoine_ehuA ectoine 99.8 9.6E-21 2.1E-25 173.2 11.9 90 3-93 141-234 (252)
493 cd03245 ABCC_bacteriocin_expor 99.8 9E-21 2E-25 169.8 11.5 80 5-85 137-218 (220)
494 PRK13545 tagH teichoic acids e 99.8 1.4E-20 3.1E-25 184.5 13.6 90 2-92 137-229 (549)
495 PRK11614 livF leucine/isoleuci 99.8 7.2E-21 1.6E-25 172.4 10.8 90 3-93 132-224 (237)
496 PRK10418 nikD nickel transport 99.8 1.3E-20 2.7E-25 172.6 12.4 90 3-93 135-228 (254)
497 PRK13652 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 174.8 12.5 92 2-94 131-226 (277)
498 PRK10070 glycine betaine trans 99.8 1.2E-20 2.5E-25 182.2 12.7 91 2-93 158-252 (400)
499 PRK10584 putative ABC transpor 99.8 9E-21 2E-25 170.8 11.2 82 3-85 141-226 (228)
500 PRK14249 phosphate ABC transpo 99.8 1.2E-20 2.5E-25 172.5 12.1 89 2-91 141-231 (251)
No 1
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.7e-63 Score=488.10 Aligned_cols=306 Identities=40% Similarity=0.648 Sum_probs=247.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+||||||.||+||++|+.+||+|||||||||||.+++.||+++|++|.+|||+|||||+||+++|++|+++++|+
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684 83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 162 (356)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
+..|.|||+.|.+++....+...+.++++++++++++.+...........+...++.++..++..... ...+....
T Consensus 228 l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~----~~~~~~~~ 303 (530)
T COG0488 228 LTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA----EERPVEEG 303 (530)
T ss_pred eeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhh----hccccccc
Confidence 99999999999999988888888888887888777776543322222121222333333333321100 00001112
Q ss_pred eeeEEEecCCC-CCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 163 YIVKFRFPNPP-YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
.+..+.++.+. ..++++++++|+++.|++++.+++++||.|.+|+++||+||||+|||||+++|+|...|.+|.|.+.
T Consensus 304 ~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g- 382 (530)
T COG0488 304 KPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG- 382 (530)
T ss_pred ccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-
Confidence 22334455444 3678899999999999655789999999999999999999999999999999999998888877652
Q ss_pred eccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH
Q psy2684 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS 320 (356)
Q Consensus 242 ~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~ 320 (356)
...++||++|+.. .++++.|+.+++.... ......+
T Consensus 383 ------------------------------------------~~v~igyf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~ 419 (530)
T COG0488 383 ------------------------------------------ETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEV 419 (530)
T ss_pred ------------------------------------------CceEEEEEEehhh-hcCccCcHHHHHHhhCccccHHHH
Confidence 2357999999975 4458889999998765 3447889
Q ss_pred HHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 321 ~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+|++|+|+.....+|+..||||||.||+||++++
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred HHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc
Confidence 999999999988888899999999999999999875
No 2
>KOG0066|consensus
Probab=100.00 E-value=5e-59 Score=432.16 Aligned_cols=312 Identities=67% Similarity=1.119 Sum_probs=276.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
|++||+..+|||||.||.|||||...|.+|.|||||||||..++.||.++|+.|..|++|||||..|++.+|+.|++|++
T Consensus 405 MQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 405 MQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred HhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--HHhcc-ccCCCCchhhh
Q psy2684 81 KKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQA--RKRVQ-KDDDDEPKELL 157 (356)
Q Consensus 81 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~ 157 (356)
.++.+|.|||..|..+|.+.+.+....|+++++++++|+..+.+.+++.++.+..+.+++. ..+-+ .+++..+++++
T Consensus 485 qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL 564 (807)
T KOG0066|consen 485 QKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELL 564 (807)
T ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHHHH
Confidence 9999999999999999999999999999999999999999999999888877776666543 22222 34455667788
Q ss_pred cCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i 237 (356)
.+|.++.+.|.||.+....+|++.+++|+|.|++.+++|..++|-|.--.+++||||||.||||||++|.|-+.|
T Consensus 565 ~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P----- 639 (807)
T KOG0066|consen 565 QRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP----- 639 (807)
T ss_pred hCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-----
Confidence 889999999999999999999999999999999889999999998888888888766665555555555555554
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCH
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY 317 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~ 317 (356)
+.|..+.+.+.+||+++|+..+++..+.|..|++...+++++
T Consensus 640 --------------------------------------~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpy 681 (807)
T KOG0066|consen 640 --------------------------------------NDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPY 681 (807)
T ss_pred --------------------------------------CcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCCh
Confidence 455556666789999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
++++..|..|||...++.-.+..|||||+.||++|-+.
T Consensus 682 q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 682 QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh
Confidence 99999999999988777777899999999999999764
No 3
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-56 Score=456.49 Aligned_cols=303 Identities=37% Similarity=0.641 Sum_probs=229.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMK 81 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g 81 (356)
.++++.+|||||||||+||++|+.+|+||||||||||||+.++.||.++|+++++|||+||||+++++.+||+|++|++|
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCc
Q psy2684 82 KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPR 161 (356)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
++..|.|+|+.|...+........+.+++++++++++..+...........+...++.+...++.... + ...
T Consensus 223 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~---~-----~~~ 294 (638)
T PRK10636 223 SLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIA---P-----AHV 294 (638)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccc---c-----ccc
Confidence 99999999999998776555556666777776666655432210000000111111111112211100 0 000
Q ss_pred ceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 162 EYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
.....+.++.+...++++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 373 (638)
T PRK10636 295 DNPFHFSFRAPESLPNPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK 373 (638)
T ss_pred CCceeEecCCCccCCCceEEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 1122344444444567799999999999 567799999999999999999999999999999999999999999998741
Q ss_pred eccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH
Q psy2684 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS 320 (356)
Q Consensus 242 ~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~ 320 (356)
..++||++|+....+.+..++.+++.... ......+
T Consensus 374 -------------------------------------------~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 374 -------------------------------------------GIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred -------------------------------------------CEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence 12589999975334556667777654322 2234567
Q ss_pred HHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 321 ~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++|+.|+|......+++.+|||||||||+||++++
T Consensus 411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 889999999754344588999999999999999974
No 4
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.2e-55 Score=449.69 Aligned_cols=301 Identities=28% Similarity=0.479 Sum_probs=226.8
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+|||||||||+||++|+.+|+||||||||||||+.++.||.++|+++++|||+||||+++++.+||+|++|++|+
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~ 230 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGK 230 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684 83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 162 (356)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
++.|.|+|+.|..++..........++.+.++++++..+......+. ..+. ..+.++..++...... + ....
T Consensus 231 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~-~~r~~~~~~~~~~~~~-~-----~~~~ 302 (635)
T PRK11147 231 LVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRN-EGRVRALKALRRERSE-R-----REVM 302 (635)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhH-HHHHHHHHHhhhhhcc-c-----cccC
Confidence 99999999999987766555555555555555544433221100000 0000 1111111111100000 0 0001
Q ss_pred eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
....+.++.+...++++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+ |.
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~ 380 (635)
T PRK11147 303 GTAKMQVEEASRSGKIVFEMENVNYQI-DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380 (635)
T ss_pred CceeEEeCCCCCCCCceEEEeeeEEEE-CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC
Confidence 122344444444567799999999999 5667999999999999999999999999999999999999999999977 21
Q ss_pred ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CC--C--H
Q psy2684 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL--P--Y 317 (356)
Q Consensus 243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~--~--~ 317 (356)
..++||++|++ ..+++..|+.+++.... .. . .
T Consensus 381 ------------------------------------------~~~i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~ 417 (635)
T PRK11147 381 ------------------------------------------KLEVAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRP 417 (635)
T ss_pred ------------------------------------------CcEEEEEeCcc-cccCCCCCHHHHHHhhcccccccchH
Confidence 12589999986 35788899999876432 11 1 3
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++++|+.|++......+++.+|||||||||+||++++
T Consensus 418 ~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 418 RHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred HHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 457888999999754444588999999999999999974
No 5
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.6e-54 Score=439.74 Aligned_cols=304 Identities=44% Similarity=0.778 Sum_probs=222.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMK 81 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g 81 (356)
.++++.+||||||||++||++|+.+|++|||||||||||+.++.||.++|+++++|||+||||++++..+||+|++|++|
T Consensus 338 ~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g 417 (718)
T PLN03073 338 QVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQ 417 (718)
T ss_pred HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCc
Q psy2684 82 KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPR 161 (356)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
++..|.|+|+.|...+......+.++++.++++.+.++..........+.......+.+...++.... . .+.
T Consensus 418 ~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~--~------~~~ 489 (718)
T PLN03073 418 KLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVD--A------VVN 489 (718)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhh--c------ccc
Confidence 99999999999988777666777777887777776665432111110000000000000011110000 0 000
Q ss_pred ceeeEEEecCC-CCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe
Q psy2684 162 EYIVKFRFPNP-PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240 (356)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~ 240 (356)
.....+.++.+ ...++++++++|+++.|+++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~ 569 (718)
T PLN03073 490 DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569 (718)
T ss_pred CCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEEC
Confidence 01111222221 12345789999999999544569999999999999999999999999999999999999999999763
Q ss_pred eeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH-hcCCCHHH
Q psy2684 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEK 319 (356)
Q Consensus 241 g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~-~~~~~~~~ 319 (356)
+ +.++||++|++...+....+....+.. ........
T Consensus 570 ~-------------------------------------------~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 606 (718)
T PLN03073 570 A-------------------------------------------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 606 (718)
T ss_pred C-------------------------------------------ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHH
Confidence 1 136899999853222111122222211 12345667
Q ss_pred HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++++|+.+|+......+++.+|||||||||+||++++
T Consensus 607 i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 607 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred HHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHh
Confidence 8899999999754444578999999999999999974
No 6
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-53 Score=424.37 Aligned_cols=303 Identities=29% Similarity=0.496 Sum_probs=219.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+||||||||++||++|+.+|+||||||||++||+.++.||.++|+++++|||+||||++++.++||+|++|++|+
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE 229 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCE
Confidence 46789999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684 83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 162 (356)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
++.|.|+|+.|.+++........++++.++++++++...................+.+........ .... .....
T Consensus 230 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~ 304 (530)
T PRK15064 230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLE---EVKP--SSRQN 304 (530)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhcccc---ccCC--ccccC
Confidence 987899999998766654444555555555555444322110000000000000000001110000 0000 00000
Q ss_pred eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
. ...++.....++++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 305 ~--~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~- 380 (530)
T PRK15064 305 P--FIRFEQDKKLHRNALEVENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE- 380 (530)
T ss_pred c--eeeCCCCCCCCCceEEEEeeEEee-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence 0 011222222245689999999999 556799999999999999999999999999999999999999999998753
Q ss_pred ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHH
Q psy2684 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKS 320 (356)
Q Consensus 243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~ 320 (356)
+.++||++|++...+++..|+.+++.... ......+
T Consensus 381 ------------------------------------------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 418 (530)
T PRK15064 381 ------------------------------------------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV 418 (530)
T ss_pred ------------------------------------------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence 13689999986434566788988765321 1234567
Q ss_pred HHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 321 ~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++|+.+|+.....++++.+|||||||||+||++++
T Consensus 419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence 889999999532334578999999999999999974
No 7
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.5e-52 Score=418.62 Aligned_cols=299 Identities=27% Similarity=0.469 Sum_probs=218.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+|||||||||+||++|+.+|++||||||||+||+.++.||.++|+++++|||+||||++++..+||+|++|++|+
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684 83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 162 (356)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
++.|.|+|+.|.+.+........+.++..+++++++........... .. ....+.+...+.... .+. ..+..
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---~~~---~~~~~ 309 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QA-KSKARLARYEELLSE---EYQ---KRNET 309 (556)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HH-HHHHHHHHHHHhhcc---ccc---ccCCC
Confidence 98899999999876654444444444444444433332211100000 00 000000000111000 000 00000
Q ss_pred eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
..+.++......+++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 310 --~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~- 385 (556)
T PRK11819 310 --NEIFIPPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE- 385 (556)
T ss_pred --ceeecCCCCCCCCeEEEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence 1111222222245789999999999 556799999999999999999999999999999999999999999998731
Q ss_pred ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC--CH
Q psy2684 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--PY 317 (356)
Q Consensus 243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~--~~ 317 (356)
..++||++|++ ..+++..|+.+++.... .. ..
T Consensus 386 ------------------------------------------~~~i~~v~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~ 422 (556)
T PRK11819 386 ------------------------------------------TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNRE 422 (556)
T ss_pred ------------------------------------------ceEEEEEeCch-hhcCCCCCHHHHHHhhcccccccccH
Confidence 01589999986 24677889999875422 11 23
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++.+|+.+++.....++++.+|||||||||+||++++
T Consensus 423 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 423 IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 346678999999753334578999999999999999974
No 8
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-51 Score=416.96 Aligned_cols=299 Identities=29% Similarity=0.476 Sum_probs=217.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+||||||||++||++|+.+|++||||||||+||+.++.||.++|+++++|||+||||++++..+||+|++|++|+
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 67899999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684 83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 162 (356)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
++.|.|+|+.|.+...........++++.++++.++........... ... ...+.....+... . .+. .+ .
T Consensus 236 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-~--~~~----~~-~ 305 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAK-SKARLARYEELLS-Q--EFQ----KR-N 305 (552)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHH-HHHHHHHHHhhhh-h--ccc----cc-C
Confidence 98899999999876654444444444444444433322211000000 000 0000000000000 0 000 00 0
Q ss_pred eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
....+.++......+++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~- 383 (552)
T TIGR03719 306 ETAEIYIPPGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE- 383 (552)
T ss_pred CCceeecCCCCCCCCeEEEEeeEEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence 001112222222346789999999999 556799999999999999999999999999999999999999999998731
Q ss_pred ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC--H
Q psy2684 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP--Y 317 (356)
Q Consensus 243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~--~ 317 (356)
..++||++|++. .+++..|+.+++.... ... .
T Consensus 384 ------------------------------------------~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~ 420 (552)
T TIGR03719 384 ------------------------------------------TVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKRE 420 (552)
T ss_pred ------------------------------------------ceEEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcch
Confidence 015899999852 4677889999876432 111 2
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++++++.+++.....++++.+|||||||||+||++++
T Consensus 421 ~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK 459 (552)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 345678999999754334578999999999999999974
No 9
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.6e-53 Score=408.46 Aligned_cols=275 Identities=25% Similarity=0.372 Sum_probs=205.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++++|||||||||.||+||+++|++||+||||+.||+..+..+.++|+ +.++++|+||||+..+.++||||+||
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm 228 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM 228 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEE
Confidence 46899999999999999999999999999999999999999877766665 45789999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|++++.+..-+-|.+....+...+.. . .......
T Consensus 229 ~~G~iVE~G~~~~i~~~p~hpYT~~Ll~-------------a---------------------~p~~~~~---------- 264 (539)
T COG1123 229 YKGEIVETGPTEEILSNPQHPYTRGLLA-------------A---------------------VPRLGDE---------- 264 (539)
T ss_pred ECCEEEEecCHHHHHhccCCcccHHHHh-------------h---------------------CCCcccc----------
Confidence 9999998644333332211111000000 0 0000000
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCC------C----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG------G----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
... .. .........|+++++|+++.|.. . ..++++|||+|.+||++||||+||||||||.++|+|
T Consensus 265 ~~~----~~-~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 265 KII----RL-PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred ccc----cc-ccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 000 00 00001115789999999999952 1 358999999999999999999999999999999999
Q ss_pred ccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHH
Q psy2684 229 ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308 (356)
Q Consensus 229 l~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~ 308 (356)
+++|++|.|.++|.++... .+. ....++++-++||+|...++|.+|+.+.
T Consensus 340 L~~P~~G~i~~~g~~~~~~-----------------------------~~~-~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLT-----------------------------GGE-LRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred CCCCCCceEEEeCcccccc-----------------------------cch-hhhhhhheEEEEeCcccccCccccHHHH
Confidence 9999999999998763211 011 1112457899999999999999999998
Q ss_pred HHHhcC----CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 309 LMKLFN----LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 309 ~~~~~~----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..... .. .+.+.++|+.+|++.....++|++||||||||+||||+|.
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa 445 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA 445 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh
Confidence 865432 11 1346678999999975444567999999999999999973
No 10
>KOG0927|consensus
Probab=100.00 E-value=2.7e-52 Score=396.87 Aligned_cols=306 Identities=45% Similarity=0.787 Sum_probs=245.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEecChhHHhhhcCEEEEEe
Q psy2684 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-TLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++++..|||||++|++||++|+.+|++|||||||||||++++.||+++|.++.. ++|++||+.+|++.+|++|++++
T Consensus 214 m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 214 MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLD 293 (614)
T ss_pred HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheec
Confidence 46788999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEK-AERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
.++++.|.|||++|...+....+.+.++|+++++.+..++....+.-. ..+..+++.+..+...++... .+.+
T Consensus 294 ~kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~------gL~e 367 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEAD------GLTE 367 (614)
T ss_pred ccceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhc------cccc
Confidence 999999999999999988888888888888888887776653221111 011111122222222222211 1112
Q ss_pred CC-cceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684 159 KP-REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237 (356)
Q Consensus 159 ~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i 237 (356)
++ .+....+.++.....+.|++.+.|++|.|+++..++++++|-|..++++++|||||+||||||+++.|.+.|..|.|
T Consensus 368 k~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v 447 (614)
T KOG0927|consen 368 KVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447 (614)
T ss_pred cccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccc
Confidence 22 23345566666556677899999999999655579999999999999999999999999999999999999888876
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L 315 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~ 315 (356)
.-. ...+++++-|+..+++.-+.+..++++..+. .
T Consensus 448 s~~-------------------------------------------~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~ 484 (614)
T KOG0927|consen 448 SRH-------------------------------------------SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEK 484 (614)
T ss_pred ccc-------------------------------------------ccccchhhhhhhHhhcCcchhHHHHHHHhccccc
Confidence 332 2345778889888888888899999887654 4
Q ss_pred CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 316 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 316 ~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
..++++.+|++|||.......|+++||+|||.||++|+++
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH
Confidence 5577889999999998888889999999999999999985
No 11
>KOG0062|consensus
Probab=100.00 E-value=2.8e-51 Score=387.96 Aligned_cols=304 Identities=44% Similarity=0.675 Sum_probs=232.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
|+.+|+.+||||||.|++|||||..+||+|||||||||||..++.||+++|..|+.|+|+||||+.||+.+|+.|+++++
T Consensus 191 mq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 191 MQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred HHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCC
Q psy2684 81 KKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKP 160 (356)
Q Consensus 81 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
-++-.|.|||+.|.+.+..+...++++|+.+......++.......-..++.....++-+ .+.+- + ...+..
T Consensus 271 ~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk---~L~kl----~-~lk~~~ 342 (582)
T KOG0062|consen 271 LKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIK---MLGKL----P-ALKSTL 342 (582)
T ss_pred hhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHH---HhccC----C-CCCccc
Confidence 999999999999999888888888888887766655555432111000000000011111 11110 0 000001
Q ss_pred cceeeEEEecC-CCCCCCCcEEEecceeeeCCCc-cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 161 REYIVKFRFPN-PPYLPPPVLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~-~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
.+....+.+|. ......|.+++.+|+|.|..+. .++.++++++..-++++++|+||+||||+++++.+-..|..|.+
T Consensus 343 ~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~- 421 (582)
T KOG0062|consen 343 IEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV- 421 (582)
T ss_pred eecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee-
Confidence 12223455655 2345678999999999997666 68899999999999999997777777777777777666655543
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCH
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPY 317 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~ 317 (356)
...++.+++|++|+.-.++.-..+..++++.. .+.+.
T Consensus 422 ------------------------------------------~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ 459 (582)
T KOG0062|consen 422 ------------------------------------------GRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTE 459 (582)
T ss_pred ------------------------------------------eecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCH
Confidence 34457899999998765554444556666554 46788
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
++++..|+.||++.....+++..||||||-||++|.++
T Consensus 460 ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 460 EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh
Confidence 99999999999999888788899999999999999985
No 12
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.5e-48 Score=390.15 Aligned_cols=262 Identities=25% Similarity=0.379 Sum_probs=197.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||++|+.+|++|||||||++||+.++.++.++|++ ++.|||+||||++++.++||+|++
T Consensus 162 ~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~ 241 (520)
T TIGR03269 162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW 241 (520)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 3678999999999999999999999999999999999999999998776654 367999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684 78 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 157 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (356)
|++|+++. .|+++.+..... ..+. ...
T Consensus 242 l~~G~i~~-~g~~~~~~~~~~-----------------~~~~------------------------~~~----------- 268 (520)
T TIGR03269 242 LENGEIKE-EGTPDEVVAVFM-----------------EGVS------------------------EVE----------- 268 (520)
T ss_pred EeCCEEee-ecCHHHHHHHHH-----------------hhch------------------------hhc-----------
Confidence 99999975 577766532100 0000 000
Q ss_pred cCCcceeeEEEecCCCCCCCCcEEEecceeeeCC----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
++ .+...+.++++++|+++.|++ +..+|+++||+|.+|++++|+||||||||||+++|+|+++|+
T Consensus 269 -~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~ 337 (520)
T TIGR03269 269 -KE----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT 337 (520)
T ss_pred -cc----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 00 000112458999999999942 246999999999999999999999999999999999999999
Q ss_pred CCceeEe-eecc-ccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH
Q psy2684 234 KGKVLLE-KVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311 (356)
Q Consensus 234 ~G~i~~~-g~~~-~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~ 311 (356)
+|+|.++ |.+. .+. . ..+ .. ....+.++||++|++ .+++..|+.+++..
T Consensus 338 ~G~i~~~~g~~~~~~~--------~----------------~~~--~~-~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~ 388 (520)
T TIGR03269 338 SGEVNVRVGDEWVDMT--------K----------------PGP--DG-RGRAKRYIGILHQEY--DLYPHRTVLDNLTE 388 (520)
T ss_pred CeEEEEecCCcccccc--------c----------------cch--hh-HHHHhhhEEEEccCc--ccCCCCcHHHHHHH
Confidence 9999996 5321 000 0 000 00 000124699999986 37788999998854
Q ss_pred hc--CCC----HHHHHHHHhhcCCCCc----cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 312 LF--NLP----YEKSRRQLGMFGLPSY----AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 312 ~~--~~~----~~~~~~~L~~~~l~~~----~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. ..+ ...+.++++.+++... ..++++.+|||||||||+||++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~ 443 (520)
T TIGR03269 389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI 443 (520)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 21 122 2346678999999752 234578999999999999999974
No 13
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.7e-49 Score=394.52 Aligned_cols=268 Identities=22% Similarity=0.308 Sum_probs=198.3
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||||||+||++|+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++..+||+|++|
T Consensus 151 ~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 678999999999999999999999999999999999999999999888876 3689999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++.+ |..+++..... ... .+.+. .. ... .
T Consensus 231 ~~G~i~~~-g~~~~~~~~~~---~~~----------~~~~~------------------~~------~~~--~------- 263 (529)
T PRK15134 231 QNGRCVEQ-NRAATLFSAPT---HPY----------TQKLL------------------NS------EPS--G------- 263 (529)
T ss_pred ECCEEEEe-CCHHHHhhCCC---CHH----------HHHHH------------------Hh------Ccc--c-------
Confidence 99999865 44433211000 000 00000 00 000 0
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCC----------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
.+ ... ...++++++++|+++.|+. ++.+|+++||+|++|++++|+||||||||||+++|+|
T Consensus 264 ~~--------~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 264 DP--------VPL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred cc--------ccc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 00 000 0113568999999999942 3569999999999999999999999999999999999
Q ss_pred ccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHH
Q psy2684 229 ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308 (356)
Q Consensus 229 l~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~ 308 (356)
+++ ++|+|+++|.++.... + ... ...+.++||++|++...+++..|+.++
T Consensus 335 l~~-~~G~i~~~g~~i~~~~--------------------------~--~~~-~~~~~~i~~v~q~~~~~l~~~~tv~e~ 384 (529)
T PRK15134 335 LIN-SQGEIWFDGQPLHNLN--------------------------R--RQL-LPVRHRIQVVFQDPNSSLNPRLNVLQI 384 (529)
T ss_pred cCC-CCcEEEECCEEccccc--------------------------h--hhH-HHhhhceEEEEeCchhhcCCcccHHHH
Confidence 994 8999999987652100 0 000 001346999999974357788899998
Q ss_pred HHHh---cC--CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 309 LMKL---FN--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 309 ~~~~---~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+... .. .+ ...+.++|+.+|+.....++++.+|||||||||+||++++
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 441 (529)
T PRK15134 385 IEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI 441 (529)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh
Confidence 7542 11 22 2346788999999742234578999999999999999974
No 14
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-49 Score=403.46 Aligned_cols=296 Identities=21% Similarity=0.232 Sum_probs=203.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.+++++ .+.|||+||||++++.++||||++
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 3688999999999999999999999999999999999999998877766654 367999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684 78 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 157 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (356)
|++|+++. .|+++.+..... ..... .+......... .. . .... ........
T Consensus 242 l~~G~i~~-~g~~~~~~~~~~---~~~~~----------~l~~~~~~~~~--------~~-~---~~~~--~~~~~~~~- 292 (623)
T PRK10261 242 MYQGEAVE-TGSVEQIFHAPQ---HPYTR----------ALLAAVPQLGA--------MK-G---LDYP--RRFPLISL- 292 (623)
T ss_pred eeCCeecc-cCCHHHhhcCCC---Chhhh----------hhhhccCcccc--------cc-c---ccCC--cccccccc-
Confidence 99999985 677766532100 00000 00000000000 00 0 0000 00000000
Q ss_pred cCCcceeeEEEecCCCCCCCCcEEEecceeeeCC----------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
..+.... ....+.....++++++++|+++.|+. ...+|+++||+|.+||+++|+|+||||||||+++|+
T Consensus 293 ~~~~~~~-~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~ 371 (623)
T PRK10261 293 EHPAKQE-PPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL 371 (623)
T ss_pred ccccccC-cccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 0000000 00000011123578999999999941 146899999999999999999999999999999999
Q ss_pred cccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHH
Q psy2684 228 GELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 307 (356)
Q Consensus 228 gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e 307 (356)
|+++|++|+|.++|.++.... .... ...+.+|+|+||++...+++.+|+.+
T Consensus 372 Gl~~p~~G~I~~~g~~i~~~~----------------------------~~~~-~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 372 RLVESQGGEIIFNGQRIDTLS----------------------------PGKL-QALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred cCCCCCCcEEEECCEECCcCC----------------------------HHHH-HHhcCCeEEEecCchhhcCCCCCHHH
Confidence 999999999999987653100 0000 01134699999997546888899999
Q ss_pred HHHHh---cCC-CH----HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 308 YLMKL---FNL-PY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 308 ~~~~~---~~~-~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++... .+. .. ..+.++|+.+|+.....++++++|||||||||+||++|+
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~ 479 (623)
T PRK10261 423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA 479 (623)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 87542 122 11 346788999999633334577999999999999999974
No 15
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=387.34 Aligned_cols=266 Identities=17% Similarity=0.246 Sum_probs=197.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|
T Consensus 139 ~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l 218 (510)
T PRK09700 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM 218 (510)
T ss_pred cccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47889999999999999999999999999999999999999999998887764 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++ +.|+++.+... +.. ..+. +.. ... ..+ ..
T Consensus 219 ~~G~i~-~~g~~~~~~~~------~~~----------~~~~--~~~--------------------~~~---~~~-~~-- 253 (510)
T PRK09700 219 KDGSSV-CSGMVSDVSND------DIV----------RLMV--GRE--------------------LQN---RFN-AM-- 253 (510)
T ss_pred ECCEEe-eecchhhCCHH------HHH----------HHhc--CCC--------------------ccc---ccc-cc--
Confidence 999996 45766554210 000 0000 000 000 000 00
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
.+ .......+++++++|+++.| + .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 254 ~~---------~~~~~~~~~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 321 (510)
T PRK09700 254 KE---------NVSNLAHETVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321 (510)
T ss_pred cc---------ccccCCCCcEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 00 00001134689999999876 3 389999999999999999999999999999999999999999999
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHhc----
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKLF---- 313 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~~---- 313 (356)
++|.++... ......+.++||++|++. ..+++..|+.+++....
T Consensus 322 ~~g~~~~~~-------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~ 370 (510)
T PRK09700 322 LNGKDISPR-------------------------------SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKD 370 (510)
T ss_pred ECCEECCCC-------------------------------CHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccc
Confidence 998664200 000001236899999852 35788899999875321
Q ss_pred -------CC-C----HHHHHHHHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 -------NL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 -------~~-~----~~~~~~~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+. . ...+.++|+.+++. +.. ++++.+|||||||||+||++++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 371 GGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccccccccChHHHHHHHHHHHHhcCCCCCCc-cCccccCChHHHHHHHHHHHHh
Confidence 11 1 12356889999996 444 4578999999999999999974
No 16
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.8e-48 Score=385.57 Aligned_cols=273 Identities=21% Similarity=0.273 Sum_probs=195.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||+|++|
T Consensus 129 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 47889999999999999999999999999999999999999999999988876 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++.. |+.+.+.... . ...+.. . ..... ...+.. .
T Consensus 209 ~~G~i~~~-~~~~~~~~~~------~----------~~~~~~------------------~---~~~~~--~~~~~~--~ 246 (490)
T PRK10938 209 ADCTLAET-GEREEILQQA------L----------VAQLAH------------------S---EQLEG--VQLPEP--D 246 (490)
T ss_pred ECCEEEEe-CCHHHHhcch------h----------hhhhhh------------------h---hccCc--cccCcc--c
Confidence 99999754 6654432100 0 000000 0 00000 000000 0
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-CCCce
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGKV 237 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~i 237 (356)
.+. .+......+++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+.+| ++|+|
T Consensus 247 ~~~-------~~~~~~~~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i 318 (490)
T PRK10938 247 EPS-------ARHALPANEPRIVLNNGVVSY-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL 318 (490)
T ss_pred ccc-------cccccCCCCceEEEeceEEEE-CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE
Confidence 000 000011235689999999999 456799999999999999999999999999999999998876 69999
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-c---
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F--- 313 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~--- 313 (356)
+++|.++.. +. .....+.++||++|++........++.+++... .
T Consensus 319 ~~~g~~~~~--------------~~-----------------~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 319 TLFGRRRGS--------------GE-----------------TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEecccCCC--------------CC-----------------CHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 999764310 00 000113469999998632122234565554321 1
Q ss_pred C----CC---HHHHHHHHhhcCCCC-ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 N----LP---YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 ~----~~---~~~~~~~L~~~~l~~-~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. .. .+.+.++++.+++.. ..+ +++.+|||||||||+||++++
T Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 368 GIYQAVSDRQQKLAQQWLDILGIDKRTAD-APFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCchhhcc-CchhhCCHHHHHHHHHHHHHh
Confidence 1 11 234678899999986 444 578999999999999999974
No 17
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-48 Score=355.74 Aligned_cols=268 Identities=24% Similarity=0.298 Sum_probs=206.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.+.++++|||||||||+||.||+.+|++||.||||+.||..-...+.++|+ ++++++++||||+..+..+||||+|
T Consensus 151 l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 367899999999999999999999999999999999999988766666665 4689999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684 78 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 157 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (356)
|..|++++.+..-..|..+...+...+ ++ ..|..
T Consensus 231 M~~G~ivE~~~t~~lF~~PqHpYTr~L----------------------------------------l~----aeP~g-- 264 (534)
T COG4172 231 MQHGEIVETGTTETLFAAPQHPYTRKL----------------------------------------LA----AEPSG-- 264 (534)
T ss_pred EeccEEeecCcHHHHhhCCCChHHHHH----------------------------------------Hh----cCCCC--
Confidence 999999975333233322111110000 00 00000
Q ss_pred cCCcceeeEEEecCCCCCCCCcEEEecceeeeCCC----------ccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGG----------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
. .++.+...+++++++++.+.|+-. ..+++++||++.+|+.+||||.||||||||-.+|.
T Consensus 265 -----~-----~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 265 -----D-----PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred -----C-----CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 0 011223346789999999988521 24899999999999999999999999999999999
Q ss_pred cccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHH
Q psy2684 228 GELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 307 (356)
Q Consensus 228 gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e 307 (356)
+++++. |+|.|+|.++.-. + ..-....+.++..|||+|...+.|.+|+.+
T Consensus 335 rL~~s~-G~I~F~G~~i~~~----------~-------------------~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 335 RLIPSQ-GEIRFDGQDIDGL----------S-------------------RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred hhcCcC-ceEEECCcccccc----------C-------------------hhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 999988 9999999887511 0 011122356799999999989999999998
Q ss_pred HHHHhc-----CCC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 308 YLMKLF-----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 308 ~~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
.+.... ..+ .+.+.+.|..+|+++....++|+++|||||||+||||++
T Consensus 385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl 441 (534)
T COG4172 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441 (534)
T ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence 876432 122 245778899999998777778899999999999999996
No 18
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-48 Score=385.59 Aligned_cols=266 Identities=18% Similarity=0.251 Sum_probs=197.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|
T Consensus 137 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 137 PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred cccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence 46789999999999999999999999999999999999999999998888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++.+ |+.+.+... .. .+.+. +. ......
T Consensus 217 ~~G~i~~~-~~~~~~~~~------~~----------~~~~~--~~----------------------------~~~~~~- 248 (506)
T PRK13549 217 RDGRHIGT-RPAAGMTED------DI----------ITMMV--GR----------------------------ELTALY- 248 (506)
T ss_pred ECCEEeee-cccccCCHH------HH----------HHHhh--Cc----------------------------Cccccc-
Confidence 99998754 443322110 00 00000 00 000000
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeC--CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-cCCC
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYP--GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKG 235 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p~~G 235 (356)
+. . ....+.++++++|+++.|+ ++..+++++||+|++||+++|+||||||||||+++|+|+++ |++|
T Consensus 249 -~~--------~-~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G 318 (506)
T PRK13549 249 -PR--------E-PHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG 318 (506)
T ss_pred -cc--------c-ccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCc
Confidence 00 0 0012346899999999994 23569999999999999999999999999999999999999 5999
Q ss_pred ceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh--
Q psy2684 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL-- 312 (356)
Q Consensus 236 ~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~-- 312 (356)
+|.++|.++... . .....+..++|++|++. ..+++..|+.+++...
T Consensus 319 ~i~~~g~~~~~~------------------------------~-~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 367 (506)
T PRK13549 319 EIFIDGKPVKIR------------------------------N-PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAAL 367 (506)
T ss_pred EEEECCEECCCC------------------------------C-HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhh
Confidence 999998765210 0 00001235899999863 2467788999887431
Q ss_pred --c-C---CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 313 --F-N---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 313 --~-~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. . .. ...+.++++.+++.....++++.+|||||||||+||++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~ 421 (506)
T PRK13549 368 DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL 421 (506)
T ss_pred hhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh
Confidence 1 1 11 1346788999999632334578999999999999999974
No 19
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-47 Score=383.67 Aligned_cols=265 Identities=18% Similarity=0.280 Sum_probs=195.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 136 ~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 4678999999999999999999999999999999999999999998887754 6799999999999999999999999
Q ss_pred CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcC
Q psy2684 80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK 159 (356)
Q Consensus 80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (356)
+|+++.+ |..+.+... .. ...+. + ... +.. .
T Consensus 216 ~G~i~~~-~~~~~~~~~------~~----------~~~~~--~------------------------~~~---~~~---~ 246 (500)
T TIGR02633 216 DGQHVAT-KDMSTMSED------DI----------ITMMV--G------------------------REI---TSL---Y 246 (500)
T ss_pred CCeEeee-cCcccCCHH------HH----------HHHHh--C------------------------ccc---ccc---c
Confidence 9998764 332221100 00 00000 0 000 000 0
Q ss_pred CcceeeEEEecCCCCCCCCcEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-CCCc
Q psy2684 160 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGK 236 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~ 236 (356)
+ ..+...++++++++|+++.|++ +..+++++||+|.+||+++|+||||||||||+++|+|+++| ++|+
T Consensus 247 ~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~ 317 (500)
T TIGR02633 247 P---------HEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317 (500)
T ss_pred c---------ccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 0 0000113458999999999832 34699999999999999999999999999999999999996 8999
Q ss_pred eeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh---
Q psy2684 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL--- 312 (356)
Q Consensus 237 i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~--- 312 (356)
|.++|.++... ......+.++||++|++. ..+++..|+.+++...
T Consensus 318 i~~~g~~~~~~-------------------------------~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 318 VFINGKPVDIR-------------------------------NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred EEECCEECCCC-------------------------------CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 99998765200 000011246899999863 2467888998876431
Q ss_pred -c----CCC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 313 -F----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 313 -~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ... ...+.++|+++++.....++++.+|||||||||+||++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~ 419 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL 419 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh
Confidence 1 111 1346788999999753334578999999999999999974
No 20
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-46 Score=376.85 Aligned_cols=270 Identities=17% Similarity=0.201 Sum_probs=196.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|
T Consensus 134 ~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 134 LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred ccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46889999999999999999999999999999999999999999998888764 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++. .|+++.+.... ..+ .+...... . .... ..
T Consensus 214 ~~G~i~~-~g~~~~~~~~~------~~~----------~~~~~~~~-~-----------------~~~~------~~--- 249 (510)
T PRK15439 214 RDGTIAL-SGKTADLSTDD------IIQ----------AITPAARE-K-----------------SLSA------SQ--- 249 (510)
T ss_pred ECCEEEE-ecChHHcCHHH------HHH----------HHhCcccc-c-----------------cccc------cc---
Confidence 9999975 68887664311 000 00000000 0 0000 00
Q ss_pred CCcceeeEEEe-cCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684 159 KPREYIVKFRF-PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237 (356)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i 237 (356)
. ....+.. ......++++++++|+++ .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|
T Consensus 250 ~---~~~~~~~~~~~~~~~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i 320 (510)
T PRK15439 250 K---LWLELPGNRRQQAAGAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI 320 (510)
T ss_pred c---ccccccccccccCCCCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence 0 0000000 001112456899999983 15999999999999999999999999999999999999999999
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh----
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL---- 312 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~---- 312 (356)
.++|.++... + + . ...+.+++|++|++. ..+++..|+.+++...
T Consensus 321 ~~~g~~i~~~---------------~-----------~--~---~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 321 MLNGKEINAL---------------S-----------T--A---QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred EECCEECCCC---------------C-----------H--H---HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 9998765210 0 0 0 001236899999852 2467778888876321
Q ss_pred cC---CC---HHHHHHHHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 313 FN---LP---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 313 ~~---~~---~~~~~~~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. .. .+.+.++|+.+|+. ... ++++.+|||||||||+||++++
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~kqrl~la~al~ 419 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHA-EQAARTLSGGNQQKVLIAKCLE 419 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCc-cCccccCCcHHHHHHHHHHHHh
Confidence 01 11 12466889999997 444 4578999999999999999974
No 21
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=375.12 Aligned_cols=259 Identities=20% Similarity=0.260 Sum_probs=192.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||+|++|
T Consensus 135 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 135 SDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999999999999999988777654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++.. |..+..... .. ..... + ......
T Consensus 215 ~~G~i~~~-~~~~~~~~~------~~----------~~~~~--~------------------------~~~~~~------ 245 (501)
T PRK10762 215 RDGQFIAE-REVADLTED------SL----------IEMMV--G------------------------RKLEDQ------ 245 (501)
T ss_pred eCCEEEEe-cCcCcCCHH------HH----------HHHhc--C------------------------CCcccc------
Confidence 99999753 433221100 00 00000 0 000000
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
.+. .+ ....+++++++|+++ .+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 246 ~~~-------~~--~~~~~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~ 310 (501)
T PRK10762 246 YPR-------LD--KAPGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT 310 (501)
T ss_pred ccc-------cc--cCCCCcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 000 00 011346899999984 269999999999999999999999999999999999999999999
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh----c
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL----F 313 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~----~ 313 (356)
++|.++... ......+.++||++|++. ..+++..|+.+++... .
T Consensus 311 ~~g~~i~~~-------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~ 359 (501)
T PRK10762 311 LDGHEVVTR-------------------------------SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYF 359 (501)
T ss_pred ECCEECCCC-------------------------------CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhh
Confidence 998765210 000001235999999863 2467788999887431 1
Q ss_pred ----C-CC----HHHHHHHHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 ----N-LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 ----~-~~----~~~~~~~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+ .. .+.++++|+.+++. ... ++++.+|||||||||+||++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 360 SRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLM 411 (501)
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHh
Confidence 1 11 23467889999995 444 4578999999999999999974
No 22
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=373.77 Aligned_cols=262 Identities=21% Similarity=0.280 Sum_probs=191.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|
T Consensus 134 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred cCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999999888764 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++.....+.... .+.. ...+.. ... ..
T Consensus 214 ~~G~i~~~~~~~~~~~------~~~~----------~~~~~~--------------------------~~~----~~--- 244 (501)
T PRK11288 214 KDGRYVATFDDMAQVD------RDQL----------VQAMVG--------------------------REI----GD--- 244 (501)
T ss_pred ECCEEEeecCccccCC------HHHH----------HHHhcC--------------------------CCc----cc---
Confidence 9999874221111000 0000 000000 000 00
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
.. .. .+...++++++++|+++. .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 245 -~~------~~-~~~~~~~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 311 (501)
T PRK11288 245 -IY------GY-RPRPLGEVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY 311 (501)
T ss_pred -cc------cc-cccCCCCcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE
Confidence 00 00 000113457899999842 389999999999999999999999999999999999999999999
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHhc----
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKLF---- 313 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~~---- 313 (356)
++|.++... + .....+..++|++|++. ..+++..|+.+++....
T Consensus 312 ~~g~~~~~~--------------~-----------------~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~ 360 (501)
T PRK11288 312 LDGKPIDIR--------------S-----------------PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHH 360 (501)
T ss_pred ECCEECCCC--------------C-----------------HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhh
Confidence 988664210 0 00001246899999863 34677889988864311
Q ss_pred ---C--CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 ---N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 ---~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+ .. .+.++++|+.+++.....++++.+|||||||||+||++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 361 LRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 1 01 1346789999999533334578999999999999999974
No 23
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=367.69 Aligned_cols=263 Identities=15% Similarity=0.198 Sum_probs=191.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++..+||+|++|
T Consensus 128 ~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 128 PRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred ccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 36789999999999999999999999999999999999999999998888764 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
++|+++.. |+.+.... ... ...+. + ... ...
T Consensus 208 ~~G~i~~~-~~~~~~~~------~~~----------~~~~~--~------------------------~~~---~~~--- 238 (491)
T PRK10982 208 RDGQWIAT-QPLAGLTM------DKI----------IAMMV--G------------------------RSL---TQR--- 238 (491)
T ss_pred ECCEEEee-cChhhCCH------HHH----------HHHHh--C------------------------CCc---ccc---
Confidence 99999753 43322110 000 00000 0 000 000
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
.+. +. ....+++++++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.
T Consensus 239 ~~~--------~~-~~~~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 306 (491)
T PRK10982 239 FPD--------KE-NKPGEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT 306 (491)
T ss_pred ccc--------cc-CCCCCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence 000 00 01134589999999875 3589999999999999999999999999999999999999999999
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHH-----HHHh
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEY-----LMKL 312 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~-----~~~~ 312 (356)
++|.++... + .....+..++|++|++. ..++++.++.++ +...
T Consensus 307 ~~g~~i~~~---------------~----------------~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (491)
T PRK10982 307 LHGKKINNH---------------N----------------ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNY 355 (491)
T ss_pred ECCEECCCC---------------C----------------HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhh
Confidence 998765210 0 00001235899999853 235666665543 2111
Q ss_pred ---cCC-C----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 313 ---FNL-P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 313 ---~~~-~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+. . ...++++++.+++.....++++.+|||||||||+||++++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 356 KNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 111 1 2346778999999643335588999999999999999874
No 24
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.1e-45 Score=368.91 Aligned_cols=258 Identities=29% Similarity=0.360 Sum_probs=189.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||+|++|+
T Consensus 206 ~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAY 285 (590)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 47899999999999999999999999999999999999999999999988877 7899999999999999999999997
Q ss_pred CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcC
Q psy2684 80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK 159 (356)
Q Consensus 80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (356)
++. |.|..+...... +. ...++ .. +.... . .. +... .
T Consensus 286 ~~~-----g~~g~~~~~~~~-~~-~i~~~----------~~-~~~~~------------e-~~-~~~~----~------- 322 (590)
T PRK13409 286 GEP-----GAYGVVSKPKGV-RV-GINEY----------LK-GYLPE------------E-NM-RIRP----E------- 322 (590)
T ss_pred CCc-----cccceecchhHH-HH-hHHHH----------HH-hcchh------------h-hh-hccc----c-------
Confidence 641 223222211110 00 00000 00 00000 0 00 0000 0
Q ss_pred CcceeeEEEecCC--CCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684 160 PREYIVKFRFPNP--PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237 (356)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i 237 (356)
...+....+ ...+.++++++|+++.| ++. .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|
T Consensus 323 ----~~~~~~~~~~~~~~~~~~l~~~~ls~~~-~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I 396 (590)
T PRK13409 323 ----PIEFEERPPRDESERETLVEYPDLTKKL-GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV 396 (590)
T ss_pred ----CcceecCCCccccCCceEEEEcceEEEE-CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 000011000 01245689999999999 443 5899999999999999999999999999999999999999998
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CC-
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL- 315 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~- 315 (356)
.++ .+++|++|++. ++...|+.+++.... ..
T Consensus 397 ~~~---------------------------------------------~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~ 429 (590)
T PRK13409 397 DPE---------------------------------------------LKISYKPQYIK--PDYDGTVEDLLRSITDDLG 429 (590)
T ss_pred EEe---------------------------------------------eeEEEeccccc--CCCCCcHHHHHHHHhhhcC
Confidence 763 14899999864 567789999875421 11
Q ss_pred CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 316 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 316 ~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
....+.++|+.+++....+ +++.+|||||||||+||++++
T Consensus 430 ~~~~~~~~L~~l~l~~~~~-~~~~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 430 SSYYKSEIIKPLQLERLLD-KNVKDLSGGELQRVAIAACLS 469 (590)
T ss_pred hHHHHHHHHHHCCCHHHHh-CCcccCCHHHHHHHHHHHHHh
Confidence 2334678999999986554 578999999999999999974
No 25
>KOG0055|consensus
Probab=100.00 E-value=4e-36 Score=311.70 Aligned_cols=142 Identities=32% Similarity=0.408 Sum_probs=111.2
Q ss_pred EEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++||+|.||. +.++|+|+||+|++|+.+||||||||||||.+.+|.++|.|++|.|.++|.++..-
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l---------- 1057 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL---------- 1057 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC----------
Confidence 899999999973 34699999999999999999999999999999999999999999999999887410
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCC-------
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGL------- 329 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l------- 329 (356)
. ....|.++|.|.|+|. +| +.|+.||+... ...+.+++.+.++..+.
T Consensus 1058 ---------------------n-l~~LR~~i~lVsQEP~--LF-~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1058 ---------------------N-LKWLRKQIGLVSQEPV--LF-NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSL 1112 (1228)
T ss_pred ---------------------C-HHHHHHhcceeccCch--hh-cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcC
Confidence 0 1122568999999984 55 56899998765 23577777766655443
Q ss_pred CCcccc---CCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHT---IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~---~~~~~LSGGqkqRvalA~~~l 356 (356)
+.-.+. .+-.+||||||||+||||+++
T Consensus 1113 P~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred cCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 221111 123589999999999999975
No 26
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=274.77 Aligned_cols=267 Identities=23% Similarity=0.317 Sum_probs=199.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++.+.+||-||||||-|-++|..+|++|||||||+.|-|..++.|+..++++ |.|||+|||.++++.++|||+.||
T Consensus 134 p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVL 213 (501)
T COG3845 134 PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL 213 (501)
T ss_pred ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEE
Confidence 36789999999999999999999999999999999999999999999888765 689999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
.+|+++ |.++.-.+. ..+++.+|.- . .+ +.
T Consensus 214 R~Gkvv---gt~~~~~~~--------------t~~ela~lMv---G----------------------~~--------v~ 243 (501)
T COG3845 214 RRGKVV---GTVDPVAET--------------TEEELAELMV---G----------------------RE--------VV 243 (501)
T ss_pred eCCeEE---eeecCCCCC--------------CHHHHHHHhc---C----------------------Cc--------cc
Confidence 999975 332210000 0001111110 0 00 00
Q ss_pred CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
.+ .. ..+..+++++|++++++..-..+...++++||+|..||+++|.|-.|.|-+.|+.+|+|+.+|.+|+|.
T Consensus 244 ~~------~~-~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~ 316 (501)
T COG3845 244 LR------VV-KPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316 (501)
T ss_pred cc------cc-cCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEE
Confidence 00 00 122344578999999998764445789999999999999999999999999999999999999999999
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh-cC--
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL-FN-- 314 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~-~~-- 314 (356)
++|.++. |..+ ........++|+|.+.. ..+.+++++.||+... +.
T Consensus 317 l~G~~v~----------~~~~--------------------~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~ 366 (501)
T COG3845 317 LNGKDVL----------GRLS--------------------PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK 366 (501)
T ss_pred ECCEecc----------ccCC--------------------HHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc
Confidence 9998751 1110 01112346889988763 4577889999987432 11
Q ss_pred -------CCH----HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 315 -------LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 315 -------~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+.. ..++++++.|++.......|+.+||||++||+-+||-+
T Consensus 367 ~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl 418 (501)
T COG3845 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAREL 418 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhh
Confidence 122 33567899999975555558899999999999999864
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=254.00 Aligned_cols=144 Identities=28% Similarity=0.430 Sum_probs=120.9
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| ++..+|++||++|.+||+++|+||||||||||||||.++..|++|+|.++|.++...
T Consensus 1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~---------- 69 (240)
T COG1126 1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK---------- 69 (240)
T ss_pred CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch----------
Confidence 368999999999 778899999999999999999999999999999999999999999999998765211
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCHH----HHHHHHhhcCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPYE----KSRRQLGMFGL 329 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~~----~~~~~L~~~~l 329 (356)
.. + ...|.++|+|||++ ++||.+|+.||+... .+.+.+ .+.++|+++||
T Consensus 70 -----~~---------------~-~~~R~~vGmVFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL 126 (240)
T COG1126 70 -----KD---------------I-LKLRRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL 126 (240)
T ss_pred -----hh---------------H-HHHHHhcCeecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc
Confidence 00 0 11256899999997 599999999998642 344443 45678999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+.+ |.+|||||||||||||+|+
T Consensus 127 ~~ka~~y-P~qLSGGQqQRVAIARALa 152 (240)
T COG1126 127 ADKADAY-PAQLSGGQQQRVAIARALA 152 (240)
T ss_pred hhhhhhC-ccccCcHHHHHHHHHHHHc
Confidence 9988775 5999999999999999974
No 28
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=277.45 Aligned_cols=262 Identities=21% Similarity=0.282 Sum_probs=192.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
+.++.+||.||||.|.||+||..+++||||||||+.|+....+.|+++++++ |.+||+|||+++++.++||||.||.
T Consensus 140 ~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlR 219 (500)
T COG1129 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLR 219 (500)
T ss_pred hhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEe
Confidence 5678999999999999999999999999999999999999999988887765 6899999999999999999999999
Q ss_pred CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcC
Q psy2684 80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK 159 (356)
Q Consensus 80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (356)
+|+.+.....-+++.. .++ .+.|. +. +. ..
T Consensus 220 DG~~v~~~~~~~~~~~------~~l----------v~~Mv--Gr------------------------~~----~~---- 249 (500)
T COG1129 220 DGRVVGTRPTAAETSE------DEL----------VRLMV--GR------------------------EL----ED---- 249 (500)
T ss_pred CCEEeeecccccCCCH------HHH----------HHHhh--Cc------------------------ch----hh----
Confidence 9998742110011100 000 00000 00 00 00
Q ss_pred CcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684 160 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~ 239 (356)
.++. +.....+.+++++++++..- .++|+||++++||++||.|--|||+|-++++|.|..++.+|+|.+
T Consensus 250 --~~~~----~~~~~~~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l 318 (500)
T COG1129 250 --LFPE----PPEEGIGEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILL 318 (500)
T ss_pred --hccc----ccccCCCCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEE
Confidence 0000 00112346789999998532 589999999999999999999999999999999999999999999
Q ss_pred eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh-----c
Q psy2684 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL-----F 313 (356)
Q Consensus 240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~-----~ 313 (356)
+|..+.... ........|+|++-+-. ..++..+++.+|+... .
T Consensus 319 ~G~~v~~~s-------------------------------p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~ 367 (500)
T COG1129 319 DGKPVRIRS-------------------------------PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFS 367 (500)
T ss_pred CCEEccCCC-------------------------------HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhc
Confidence 998764321 00011235788887654 3577888888876321 1
Q ss_pred -C--CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 -N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 -~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ++ ...++++...+++.......++.+||||.||||.|||.|.
T Consensus 368 ~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 368 RRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred cccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 0 11 1346678889999766666789999999999999999863
No 29
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-33 Score=309.57 Aligned_cols=143 Identities=21% Similarity=0.234 Sum_probs=113.6
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|+++..-.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~--------- 1304 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG--------- 1304 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC---------
Confidence 58999999999544 57999999999999999999999999999999999999999999999999874100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT-- 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~-- 335 (356)
....+.+++|++|++ .+|+ -|+.+|+......+.+++++.++..++.+....
T Consensus 1305 -----------------------~~~lR~~i~iVpQdp--~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp 1358 (1495)
T PLN03232 1305 -----------------------LTDLRRVLSIIPQSP--VLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNP 1358 (1495)
T ss_pred -----------------------HHHHHhhcEEECCCC--eeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 011245799999998 3665 489999854335667788888887766432211
Q ss_pred --------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 --------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 --------~~~~~LSGGqkqRvalA~~~l 356 (356)
..-..||||||||++|||+++
T Consensus 1359 ~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1359 FGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred CCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 122579999999999999985
No 30
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7e-33 Score=305.62 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=114.9
Q ss_pred cEEEecceeeeCCCc-cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~-~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-|+++||+++|+++. .+|+|+||+|++||++||+|++|||||||+++|.|++.|++|+|.++|+++..-.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~--------- 1378 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG--------- 1378 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC---------
Confidence 489999999996553 5999999999999999999999999999999999999999999999999874100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT-- 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~-- 335 (356)
....+.+|+|++|++. +|. -|+.+|+......+.++++++++..++.+....
T Consensus 1379 -----------------------l~~LR~~I~iVpQdp~--LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp 1432 (1560)
T PTZ00243 1379 -----------------------LRELRRQFSMIPQDPV--LFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASES 1432 (1560)
T ss_pred -----------------------HHHHHhcceEECCCCc--ccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCc
Confidence 0112457999999983 664 499999854335677888999988887543211
Q ss_pred ----CC----CCCCChHHHHHHHHHHHcC
Q psy2684 336 ----IP----IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ----~~----~~~LSGGqkqRvalA~~~l 356 (356)
.. -..||||||||++|||++|
T Consensus 1433 ~Gldt~vge~G~nLSgGQrQrLaLARALL 1461 (1560)
T PTZ00243 1433 EGIDSRVLEGGSNYSVGQRQLMCMARALL 1461 (1560)
T ss_pred ccccccccCCcCcCCHHHHHHHHHHHHHh
Confidence 11 2579999999999999985
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.1e-33 Score=306.04 Aligned_cols=143 Identities=23% Similarity=0.278 Sum_probs=113.3
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|+++..-
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i---------- 1306 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---------- 1306 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC----------
Confidence 58999999999544 4699999999999999999999999999999999999999999999999987411
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT-- 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~-- 335 (356)
+ ....+.++++++|++. +|. -|+.+|+......++++++++++..++.+....
T Consensus 1307 ---~-------------------l~~LR~~IsiVpQdp~--LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp 1361 (1622)
T PLN03130 1307 ---G-------------------LMDLRKVLGIIPQAPV--LFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNS 1361 (1622)
T ss_pred ---C-------------------HHHHHhccEEECCCCc--ccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence 0 0112457999999983 664 489999854445567788888877766332111
Q ss_pred ----C----CCCCCChHHHHHHHHHHHcC
Q psy2684 336 ----I----PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ----~----~~~~LSGGqkqRvalA~~~l 356 (356)
. .-..||||||||++|||++|
T Consensus 1362 ~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130 1362 LGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred cccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 1 22479999999999999985
No 32
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-32 Score=303.34 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=113.8
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.-++++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|++.|++|+|.++|+++..-.
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~-------- 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG-------- 1354 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC--------
Confidence 358999999999644 46999999999999999999999999999999999999999999999999874110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc--
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH-- 334 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~-- 334 (356)
....+.+++|++|+| .+|. -|+.+|+.-....+.++++++++..++.+...
T Consensus 1355 ------------------------~~~LR~~i~iVpQdp--~LF~-gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957 1355 ------------------------LHDLRFKITIIPQDP--VLFS-GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred ------------------------HHHHHhcCeEECCCC--cccC-ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhC
Confidence 011245799999998 3665 48999984333567788888888777643211
Q ss_pred ----cCCC----CCCChHHHHHHHHHHHcC
Q psy2684 335 ----TIPI----RDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ----~~~~----~~LSGGqkqRvalA~~~l 356 (356)
+..+ ..||||||||++|||++|
T Consensus 1408 p~GLdt~v~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1408 PDKLDHECAEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred ccCCCceecCCCCcCCHHHHHHHHHHHHHH
Confidence 1122 569999999999999985
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-32 Score=299.30 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=71.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
+....+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ +.|+|+||||++.+ ..||+|++|
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl 652 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVL 652 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence 3557889999999999999999999999999999999999999988888876 57999999999998 579999999
Q ss_pred eCC
Q psy2684 79 DMK 81 (356)
Q Consensus 79 ~~g 81 (356)
++|
T Consensus 653 ~~g 655 (1466)
T PTZ00265 653 SNR 655 (1466)
T ss_pred eCC
Confidence 886
No 34
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=6.9e-33 Score=259.56 Aligned_cols=257 Identities=25% Similarity=0.341 Sum_probs=165.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.+|.+++|||||.||++||++++.+.|++++||||++||...+-..-+.++++ +.+||+|+||+..|+-++|-|.++
T Consensus 207 l~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~ 286 (591)
T COG1245 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL 286 (591)
T ss_pred hhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEE
Confidence 57889999999999999999999999999999999999998876655555544 579999999999999999988888
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (356)
... +|-|..+...+..+ .-..+|-+ +. +. .+.+
T Consensus 287 YG~-----pg~YGvvs~p~svr--~gIN~yL~-----------Gy---------------------l~-------~EN~- 319 (591)
T COG1245 287 YGE-----PGVYGVVSKPKSVR--VGINEYLK-----------GY---------------------LP-------EENV- 319 (591)
T ss_pred ecC-----CccceEeccchHHH--HHHHHHHh-----------cc---------------------Cc-------hhcc-
Confidence 642 22222221111100 00000000 00 00 0000
Q ss_pred CCcceeeEEEecCCC-CCC-CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCc
Q psy2684 159 KPREYIVKFRFPNPP-YLP-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~-~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~ 236 (356)
+-+..++.|...++. ... ..+++..++++.| ++ ..|.--+=+|+.||+++++||||-|||||+++|+|.++|++|.
T Consensus 320 R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~k~~-g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 320 RFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTY-GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred cccccceeeeccCcccccccceeeecchheeec-Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 001112223222211 112 4567777777777 32 2222222345667788888888888888888888888887775
Q ss_pred eeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--
Q psy2684 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-- 314 (356)
Q Consensus 237 i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-- 314 (356)
....+++|=||... -..+.|+.+.+.....
T Consensus 398 ----------------------------------------------~~~~~vSyKPQyI~--~~~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 398 ----------------------------------------------EEDLKVSYKPQYIS--PDYDGTVEDLLRSAIRSA 429 (591)
T ss_pred ----------------------------------------------CccceEeecceeec--CCCCCcHHHHHHHhhhhh
Confidence 11246788888653 2346688887765432
Q ss_pred CCH-HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 315 LPY-EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 315 ~~~-~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... .-..++++-+.+....++ ++..|||||.||||||.+|.
T Consensus 430 ~~~s~~~~ei~~pl~l~~i~e~-~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 430 FGSSYFKTEIVKPLNLEDLLER-PVDELSGGELQRVAIAAALS 471 (591)
T ss_pred cccchhHHhhcCccchHHHHhc-ccccCCchhHHHHHHHHHhc
Confidence 111 123357778888877764 89999999999999999873
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=248.11 Aligned_cols=138 Identities=31% Similarity=0.488 Sum_probs=118.3
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.++.++++++.| ++..+|+|+||+|.+||+++|+||||||||||||+++|+.+|++|+|.++|..+.
T Consensus 2 ~~l~i~~v~~~f-~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~------------ 68 (248)
T COG1116 2 ALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT------------ 68 (248)
T ss_pred ceEEEEeeEEEe-CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC------------
Confidence 358999999999 5688999999999999999999999999999999999999999999999876542
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---CC----HHHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~~----~~~~~~~L~~~~l~ 330 (356)
.+...+||+||++ .++|..|+.+|+..... .+ .+.++++|+.+||.
T Consensus 69 -------------------------~p~~~~~~vFQ~~--~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~ 121 (248)
T COG1116 69 -------------------------GPGPDIGYVFQED--ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA 121 (248)
T ss_pred -------------------------CCCCCEEEEeccC--cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc
Confidence 1234689999997 59999999999854322 22 24578899999999
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..+.+ |++|||||||||||||+++
T Consensus 122 ~~~~~~-P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 122 GFEDKY-PHQLSGGMRQRVAIARALA 146 (248)
T ss_pred chhhcC-ccccChHHHHHHHHHHHHh
Confidence 988874 5999999999999999974
No 36
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=3.1e-31 Score=277.05 Aligned_cols=162 Identities=25% Similarity=0.285 Sum_probs=121.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+|||||+||++||++|+.+| ++|||||||++||+..+.+|.++|+++ +.|||+||||++++. .||+|+
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi 561 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIV 561 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE
Confidence 58999999999999999999999997 999999999999999999988887654 679999999999986 599999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++ +.|+++.+..... .+...+ +. + ..
T Consensus 562 ~LgpgaG~~~G~iv-~~g~~~e~~~~~~----~l~~~~---------l~--~-------------------------~~- 599 (943)
T PRK00349 562 DIGPGAGVHGGEVV-ASGTPEEIMKNPN----SLTGQY---------LS--G-------------------------KK- 599 (943)
T ss_pred EeccccCCCCCEEe-eccCHHHHhcChh----heeehh---------hc--c-------------------------cc-
Confidence 99 888886 4677765432100 000000 00 0 00
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhh
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l 226 (356)
.. ..+. .......+++++++++. ..|+++||+|+.|++++|+|+||||||||++.+
T Consensus 600 --~~---~~~~---------~~~~~~~~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 600 --KI---EVPK---------ERRKGNGKFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred --cc---cccc---------cccCCCcceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 00 0000 00001234688999862 258999999999999999999999999999865
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=1.1e-32 Score=242.85 Aligned_cols=148 Identities=34% Similarity=0.423 Sum_probs=119.5
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++....
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~------- 73 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLS------- 73 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCC-------
Confidence 36789999988533 36899999999999999999999999999999999999999999999998764211
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~----~~~~~~~L~~~~ 328 (356)
.......++.+|||+||++ .+.+++|+.|++.. ..+.. ...+..+++.+|
T Consensus 74 ---------------------~~~~~~~R~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lg 130 (226)
T COG1136 74 ---------------------EKELAKLRRKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLG 130 (226)
T ss_pred ---------------------HHHHHHHHHHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcC
Confidence 1111122356799999997 59999999999863 22332 344667889999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+...+++|.+|||||||||||||+++
T Consensus 131 l~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 131 LEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred ChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 9977775678999999999999999974
No 38
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.98 E-value=1.2e-32 Score=257.60 Aligned_cols=142 Identities=30% Similarity=0.486 Sum_probs=121.7
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.+.++++|+++.| ++..+++|+||+|.+||+++|+|||||||||+|++|+|+..|++|+|.++|.++..
T Consensus 3 ~~~l~i~~v~k~y-g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~---------- 71 (352)
T COG3842 3 KPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD---------- 71 (352)
T ss_pred CceEEEEeeeeec-CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC----------
Confidence 3578999999999 57889999999999999999999999999999999999999999999999998751
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----CCH----HHHHHHHhhcC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPY----EKSRRQLGMFG 328 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----~~~----~~~~~~L~~~~ 328 (356)
++| .+++||+|||++ .+||.+||.+|+..... ... +.+.++|+.++
T Consensus 72 ----------------lpp--------~kR~ig~VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~ 125 (352)
T COG3842 72 ----------------VPP--------EKRPIGMVFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVG 125 (352)
T ss_pred ----------------CCh--------hhcccceeecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 111 246799999997 59999999999864322 222 35778999999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+...+ ++++|||||||||||||+|.
T Consensus 126 L~~~~~R-~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 126 LEGFADR-KPHQLSGGQQQRVALARALV 152 (352)
T ss_pred chhhhhh-ChhhhChHHHHHHHHHHHhh
Confidence 9998876 55999999999999999973
No 39
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.98 E-value=9.3e-33 Score=232.17 Aligned_cols=146 Identities=32% Similarity=0.503 Sum_probs=122.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
|++++||++.|+++.++|+|+||+|++||++-|+||||||||||+++|.+..+|+.|+|.++|.++..-.+..+-
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP----- 75 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP----- 75 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc-----
Confidence 578999999998887799999999999999999999999999999999999999999999999987532222211
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
..+++||+|||++ .+.++.|+.|+++.. .+.+. .++.+.|+++||.+
T Consensus 76 ------------------------~LRR~IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~ 129 (223)
T COG2884 76 ------------------------FLRRQIGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH 129 (223)
T ss_pred ------------------------hhhheeeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch
Confidence 1257899999997 488999999998653 34443 34567899999998
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
....- |.+|||||||||+|||+++
T Consensus 130 k~~~l-P~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 130 KARAL-PSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhcC-ccccCchHHHHHHHHHHHc
Confidence 87764 4899999999999999863
No 40
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=1.4e-30 Score=271.56 Aligned_cols=160 Identities=23% Similarity=0.280 Sum_probs=118.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+|||||+||++||++|+.+| ++|||||||++||+..+.+|.++|+++ +.|||+||||++++. .||+|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVI 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEE
Confidence 47899999999999999999999986 899999999999999999988888754 579999999999996 899999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++. .|+.+.+..... .....+ + . .
T Consensus 560 ~LgpgaG~~~G~Iv~-~g~~~el~~~~~----~lt~~~---------l---------------------------~---~ 595 (924)
T TIGR00630 560 DIGPGAGIHGGEVVA-SGTPEEILANPD----SLTGQY---------L---------------------------S---G 595 (924)
T ss_pred EecccccCCCCEEee-ccCHHHHhcCch----heeeec---------c---------------------------c---c
Confidence 99 7888864 566544321000 000000 0 0 0
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhh
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~ 224 (356)
... ...+. .......++++++|++. ..|+++||+|+.|++++|+|+||||||||++
T Consensus 596 ~~~---~~~~~---------~~~~~~~~~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 596 KKK---IEVPK---------ERRPGNGKFLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred ccc---ccccc---------cccCCCcceEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 000 00000 00011234789999873 2599999999999999999999999999998
No 41
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7e-32 Score=241.00 Aligned_cols=142 Identities=30% Similarity=0.408 Sum_probs=116.6
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.|.++ ++|+|+||+|++|++++|+||||||||||++++.|+++|++|+|.+.|.++..
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~----------- 70 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK----------- 70 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccc-----------
Confidence 578999999999434 79999999999999999999999999999999999999999999998754320
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----C-------CCHHHHHHHHhh
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N-------LPYEKSRRQLGM 326 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~-------~~~~~~~~~L~~ 326 (356)
...+.+||||||.......-..||.|.+.... + .+.+.++++|++
T Consensus 71 ------------------------~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~ 126 (254)
T COG1121 71 ------------------------RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALER 126 (254)
T ss_pred ------------------------cccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHH
Confidence 11235899999976433444578999886421 1 123678899999
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+..++ ++.+|||||+|||.|||+|+
T Consensus 127 Vgm~~~~~r-~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 127 VGMEDLRDR-QIGELSGGQKQRVLLARALA 155 (254)
T ss_pred cCchhhhCC-cccccCcHHHHHHHHHHHhc
Confidence 999987764 89999999999999999984
No 42
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=1.4e-30 Score=282.56 Aligned_cols=159 Identities=25% Similarity=0.302 Sum_probs=118.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.+|++.+|||||+||++||++|+.+| ++|||||||++||+..+++|.++|+++ +.|||+||||+++ .++||+|+
T Consensus 470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~v-i~~aDrVi 548 (1809)
T PRK00635 470 PERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQM-ISLADRII 548 (1809)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhCCEEE
Confidence 47899999999999999999999999 899999999999999999988887754 6799999999995 47899999
Q ss_pred EEe------CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HLD------MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l~------~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+|. +|+++ +.|+++.+..... .... .+.. ....
T Consensus 549 ~L~pGag~~gG~Iv-~~G~~~eil~~~~----~l~~----------~~l~--------------------------~~~~ 587 (1809)
T PRK00635 549 DIGPGAGIFGGEVL-FNGSPREFLAKSD----SLTA----------KYLR--------------------------QELT 587 (1809)
T ss_pred EEcCCcccCCCEEE-EecCHHHHhhChH----HHHH----------HHhc--------------------------Cccc
Confidence 997 56765 4677665532100 0000 0000 0000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhh
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~ 224 (356)
. ..+. ......+.+++++++. ..|+++||+|+.|++++|+|+||||||||++
T Consensus 588 -~-----~~~~----------~~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 588 -I-----PIPE----------KRTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred -c-----cCcc----------cccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 0 0000 0001123688888863 2699999999999999999999999999999
No 43
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=4.7e-30 Score=282.93 Aligned_cols=142 Identities=25% Similarity=0.334 Sum_probs=112.9
Q ss_pred cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|++. .+|+|.++|+++..-.
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~--------- 1286 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVT--------- 1286 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCC---------
Confidence 5899999999964 3579999999999999999999999999999999999997 8999999999874100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC-
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI- 336 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~- 336 (356)
....+.+++|++|+|. +|. -|+.+|+.-....+.++++++|+..++.......
T Consensus 1287 -----------------------~~~lR~~is~IpQdp~--LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271 1287 -----------------------LQTWRKAFGVIPQKVF--IFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred -----------------------HHHHHhceEEEeCCCc--cCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 0112457999999983 665 4899998433345778889999988874322211
Q ss_pred -----CC----CCCChHHHHHHHHHHHcC
Q psy2684 337 -----PI----RDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 -----~~----~~LSGGqkqRvalA~~~l 356 (356)
++ ..||||||||++|||++|
T Consensus 1341 ~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred cccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 22 369999999999999985
No 44
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-32 Score=238.36 Aligned_cols=147 Identities=31% Similarity=0.461 Sum_probs=121.4
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.+++++|+++.|++++.+|++|||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.++.. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~----------~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK----------L 71 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc----------c
Confidence 478999999999988999999999999999999999999999999999999999999999999987641 1
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-----------cCCC----HHHHHH
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-----------FNLP----YEKSRR 322 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-----------~~~~----~~~~~~ 322 (356)
+| .-....+.+|||+||.+ .+.+..++.+++... +++. ...+-+
T Consensus 72 ~~-------------------k~lr~~r~~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~ 130 (258)
T COG3638 72 KG-------------------KELRKLRRDIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD 130 (258)
T ss_pred ch-------------------HHHHHHHHhceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHH
Confidence 11 11122356899999997 489999999998532 2221 234667
Q ss_pred HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.|+++|+.+.... +..+|||||||||+|||+|.
T Consensus 131 aLervgi~~~A~q-ra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 131 ALERVGILDKAYQ-RASTLSGGQQQRVAIARALV 163 (258)
T ss_pred HHHHcCcHHHHHH-HhccCCcchhHHHHHHHHHh
Confidence 8999999887765 67999999999999999974
No 45
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=9.1e-32 Score=250.30 Aligned_cols=140 Identities=30% Similarity=0.460 Sum_probs=118.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++|+++.| ++..+++++||+|..||+++|+||||||||||||+|+|++.|++|+|.++|.+++.
T Consensus 3 ~i~l~~v~K~y-g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~------------ 69 (338)
T COG3839 3 ELELKNVRKSF-GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD------------ 69 (338)
T ss_pred EEEEeeeEEEc-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC------------
Confidence 58999999999 43339999999999999999999999999999999999999999999999988641
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~ 331 (356)
+.| ..++|+||||++ .+||.+||.+|+.... +.+ ..++++..+.+++.+
T Consensus 70 --------------l~P--------~~R~iamVFQ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~ 125 (338)
T COG3839 70 --------------LPP--------EKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH 125 (338)
T ss_pred --------------CCh--------hHCCEEEEeCCc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh
Confidence 111 235799999997 5999999999986532 223 345778899999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+++ |.+|||||||||||||+++
T Consensus 126 lL~r~-P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 126 LLNRK-PLQLSGGQRQRVALARALV 149 (338)
T ss_pred HHhcC-cccCChhhHHHHHHHHHHh
Confidence 98875 5999999999999999974
No 46
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-31 Score=233.14 Aligned_cols=148 Identities=27% Similarity=0.392 Sum_probs=123.4
Q ss_pred CcEEEecceeeeCCCc---cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 178 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~---~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
++++++|+++.|+.+. .++++|||+|.+||++||+|+||||||||.++|+|+.+|+.|+|.++|..+....+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~----- 76 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR----- 76 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc-----
Confidence 4789999999995443 49999999999999999999999999999999999999999999999876532100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---C--CHHHHHHHHhhcCC
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---L--PYEKSRRQLGMFGL 329 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~--~~~~~~~~L~~~~l 329 (356)
.......|.+|||||...++|..|+.+.+..... . ...++.++|+.+|+
T Consensus 77 --------------------------~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL 130 (252)
T COG1124 77 --------------------------AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL 130 (252)
T ss_pred --------------------------chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC
Confidence 0022457999999999899999999998866432 2 23558899999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+....++.|++|||||+|||||||+|.
T Consensus 131 ~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 131 PPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred CHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 987666677999999999999999973
No 47
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1e-29 Score=278.27 Aligned_cols=139 Identities=23% Similarity=0.305 Sum_probs=111.1
Q ss_pred cEEEecceeeeC---CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCee
Q psy2684 179 VLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 179 ~l~~~~l~~~~~---~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~i 252 (356)
+++++|+++.|+ +.+.+|+|+|++|.+|++++|+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~------ 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS------ 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh------
Confidence 478999999884 24579999999999999999999999999999999999998 788999999876420
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRR 322 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~ 322 (356)
..++.+||++|+. .+++..|+.|++.... ..+. +.+.+
T Consensus 833 ------------------------------~~~~~i~yv~Q~~--~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~ 880 (1394)
T TIGR00956 833 ------------------------------SFQRSIGYVQQQD--LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880 (1394)
T ss_pred ------------------------------hhhcceeeecccc--cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 1134689999985 3677899999885321 1222 34678
Q ss_pred HHhhcCCCCccccCCCC----CCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIR----DLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~----~LSGGqkqRvalA~~~l 356 (356)
+++.+++.+..+. .++ .|||||||||+||++|+
T Consensus 881 ~l~~l~L~~~~d~-~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 881 VIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred HHHHcCChhhCCC-eeCCCCCCCCHHHhhHHHHHHHHH
Confidence 8999999876554 455 79999999999999874
No 48
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.7e-32 Score=242.74 Aligned_cols=146 Identities=26% Similarity=0.341 Sum_probs=120.0
Q ss_pred cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
|++++++++.|... ..+++|+||+|++||++||+|.||||||||+|++.++.+|++|+|.++|.++..-
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l------- 73 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL------- 73 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC-------
Confidence 57899999999541 3699999999999999999999999999999999999999999999999887421
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~ 327 (356)
.+.-....+++|||+||+++ ++...|+.++++.. .+.+. .++.++|+.+
T Consensus 74 ----------------------~~~~Lr~~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV 129 (339)
T COG1135 74 ----------------------SEAELRQLRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV 129 (339)
T ss_pred ----------------------ChHHHHHHHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc
Confidence 01111234678999999974 88899999998653 34443 3466789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
||++..+. +|.+|||||||||+|||+|.
T Consensus 130 gL~dk~~~-yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 130 GLSDKADR-YPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred CChhhhcc-CchhcCcchhhHHHHHHHHh
Confidence 99977766 45899999999999999974
No 49
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=7.3e-32 Score=236.35 Aligned_cols=142 Identities=27% Similarity=0.439 Sum_probs=119.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
|++++|+|+.| +++.+++++||+|++||+++++|||||||||+|++|.+++.|++|+|+++|.++....
T Consensus 1 MI~~~nvsk~y-~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d---------- 69 (309)
T COG1125 1 MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---------- 69 (309)
T ss_pred Cceeeeeehhc-CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC----------
Confidence 57899999999 6788999999999999999999999999999999999999999999999998864110
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~ 331 (356)
....|++|||+-|.. .+||.+|+.+++.... +++. +++.++|..+||++
T Consensus 70 ----------------------~~~LRr~IGYviQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p 125 (309)
T COG1125 70 ----------------------PVELRRKIGYVIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP 125 (309)
T ss_pred ----------------------HHHHHHhhhhhhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCH
Confidence 011256899999986 5999999999987543 3443 45778999999975
Q ss_pred --ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 --YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 --~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+ ++|++|||||||||.+||+|.
T Consensus 126 ~~~~~-RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 126 SEYAD-RYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHhh-cCchhcCcchhhHHHHHHHHh
Confidence 455 466999999999999999973
No 50
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=7.5e-31 Score=235.52 Aligned_cols=142 Identities=31% Similarity=0.500 Sum_probs=116.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|++++| +++++++|+||+|++|++++|+|||||||||||++|+|+++|.+|+|.++|.++....
T Consensus 2 ~L~~~~ls~~y-~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~---------- 70 (258)
T COG1120 2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS---------- 70 (258)
T ss_pred eeEEEEEEEEE-CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC----------
Confidence 58999999999 6789999999999999999999999999999999999999999999999998764210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cC-CC---HHHHHHHHhhc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FN-LP---YEKSRRQLGMF 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~-~~---~~~~~~~L~~~ 327 (356)
.....++++|++|.+. .....|+.|.+... +. .+ .+.+.+.|+.+
T Consensus 71 ----------------------~kelAk~ia~vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 71 ----------------------PKELAKKLAYVPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL 126 (258)
T ss_pred ----------------------HHHHhhhEEEeccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh
Confidence 0112357999999863 45577888877532 11 12 23467789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+..++ ++.+|||||||||.||++|.
T Consensus 127 ~~~~la~r-~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 127 GLEHLADR-PVDELSGGERQRVLIARALA 154 (258)
T ss_pred CcHHHhcC-cccccChhHHHHHHHHHHHh
Confidence 99998875 79999999999999999973
No 51
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.2e-30 Score=227.47 Aligned_cols=147 Identities=33% Similarity=0.471 Sum_probs=122.1
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.+++++++++++| +++.+++++||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.++.....
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~------- 77 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE------- 77 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH-------
Confidence 5689999999999 78899999999999999999999999999999999999999999999999988642110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH----hcCCCHHHHHH----HHhhcC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYEKSRR----QLGMFG 328 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~----~~~~~~~~~~~----~L~~~~ 328 (356)
.. ....+.++|++||.. .+|.++|+.||+.. ...+++..+++ .|+.+|
T Consensus 78 ---------------------~~-~~~ir~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG 133 (263)
T COG1127 78 ---------------------EE-LYEIRKRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG 133 (263)
T ss_pred ---------------------HH-HHHHHhheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC
Confidence 00 111245799999986 59999999999854 34566665554 589999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
|.....++.|++|||||++|+||||++
T Consensus 134 L~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 134 LRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred CChhhhhhCchhhcchHHHHHHHHHHH
Confidence 998844456699999999999999997
No 52
>KOG0054|consensus
Probab=99.96 E-value=1.2e-28 Score=261.49 Aligned_cols=145 Identities=23% Similarity=0.333 Sum_probs=113.1
Q ss_pred CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.--++++|++.+|..+ ..+|+++||+|++||++||||..|||||||+.+|.++..|.+|+|.+||+|+..-
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i-------- 1207 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI-------- 1207 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc--------
Confidence 4469999999999544 4699999999999999999999999999999999999999999999999997410
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
| + ...|.+++.+||+|. +| +-|+..|+--....+++++++.|+..++......
T Consensus 1208 g-----------------------L-~dLRsrlsIIPQdPv--LF-sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~ 1260 (1381)
T KOG0054|consen 1208 G-----------------------L-HDLRSRLSIIPQDPV--LF-SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSS 1260 (1381)
T ss_pred c-----------------------H-HHHHhcCeeeCCCCc--ee-cCccccccCcccccCHHHHHHHHHHhChHHHHhh
Confidence 0 0 112568999999983 55 3466666533345677888888887766432221
Q ss_pred C------C----CCCCChHHHHHHHHHHHcC
Q psy2684 336 I------P----IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ~------~----~~~LSGGqkqRvalA~~~l 356 (356)
. + -.++|-||||.++|||++|
T Consensus 1261 ~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1261 LPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred CCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence 1 1 2579999999999999986
No 53
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.7e-30 Score=229.36 Aligned_cols=142 Identities=27% Similarity=0.372 Sum_probs=117.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++.++++++.| +...+++|||++|+.||.+++.|||||||||||++|+|++.|+.|.|.++|.-+...
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~----------- 69 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV----------- 69 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccch-----------
Confidence 47889999999 677899999999999999999999999999999999999999999999998732100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-----C----CHHHHHHHHhhcCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-----L----PYEKSRRQLGMFGL 329 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-----~----~~~~~~~~L~~~~l 329 (356)
.. .....++|||+||++. +|+.+|+.+++..... . ...++.++|..+.+
T Consensus 70 -------------------~~-~~~~~R~VGfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL 127 (345)
T COG1118 70 -------------------SN-LAVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL 127 (345)
T ss_pred -------------------hc-cchhhcceeEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc
Confidence 00 1112468999999974 9999999999865321 1 12456788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
++..+++ |.+|||||||||||||+|
T Consensus 128 ~~la~ry-P~QLSGGQrQRVALARAL 152 (345)
T COG1118 128 EGLADRY-PAQLSGGQRQRVALARAL 152 (345)
T ss_pred cchhhcC-chhcChHHHHHHHHHHHh
Confidence 9988775 599999999999999997
No 54
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.1e-27 Score=261.76 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=107.7
Q ss_pred cEEEecceeeeC------------CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeecc
Q psy2684 179 VLGLHDVTFGYP------------GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNF 244 (356)
Q Consensus 179 ~l~~~~l~~~~~------------~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~ 244 (356)
.+.++||++..+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 478899988763 123699999999999999999999999999999999999774 689999987543
Q ss_pred ccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH-
Q psy2684 245 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY- 317 (356)
Q Consensus 245 ~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~- 317 (356)
.. ...++.+||++|+. .+++..|+.|++.... ..+.
T Consensus 947 ~~-----------------------------------~~~~~~igyv~Q~d--~~~~~lTV~E~L~~~a~lr~~~~~~~~ 989 (1470)
T PLN03140 947 KQ-----------------------------------ETFARISGYCEQND--IHSPQVTVRESLIYSAFLRLPKEVSKE 989 (1470)
T ss_pred Ch-----------------------------------HHhhhheEEEcccc--ccCCCCcHHHHHHHHHHhCCCCCCCHH
Confidence 10 00124589999985 4678899999875321 1222
Q ss_pred ---HHHHHHHhhcCCCCccccCCC-----CCCChHHHHHHHHHHHcC
Q psy2684 318 ---EKSRRQLGMFGLPSYAHTIPI-----RDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ---~~~~~~L~~~~l~~~~~~~~~-----~~LSGGqkqRvalA~~~l 356 (356)
..+.++++.+++.+..+. .+ ..|||||||||+||++|+
T Consensus 990 ~~~~~v~~vl~~lgL~~~~~~-~vg~~~~~~LSgGerkRvsIa~aL~ 1035 (1470)
T PLN03140 990 EKMMFVDEVMELVELDNLKDA-IVGLPGVTGLSTEQRKRLTIAVELV 1035 (1470)
T ss_pred HHHHHHHHHHHHCCChhHhCC-ccCCCCCCCcCHHHHHHHHHHHHHh
Confidence 236678999999876544 33 589999999999999874
No 55
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=221.06 Aligned_cols=145 Identities=30% Similarity=0.451 Sum_probs=120.5
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.+++++++++++| |+-.+++||||+|++||+++|||||||||||++|+|+|+++|++|+|.++|.++.-.+
T Consensus 2 ~~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~-------- 72 (250)
T COG0411 2 TPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-------- 72 (250)
T ss_pred Cceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC--------
Confidence 3578999999999 7888999999999999999999999999999999999999999999999998875211
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----------C---------CH
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----------L---------PY 317 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----------~---------~~ 317 (356)
|. ...+..++.-||++ .+|+++|+.|+++-... . ..
T Consensus 73 ------------------p~-----~iar~Gi~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~ 127 (250)
T COG0411 73 ------------------PH-----RIARLGIARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR 127 (250)
T ss_pred ------------------HH-----HHHhccceeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH
Confidence 11 01134577889987 58999999999864210 0 12
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.++|+++||.+..+. ++++||+|||+|+.||++|+
T Consensus 128 e~A~~~Le~vgL~~~a~~-~A~~LsyG~qR~LEIArALa 165 (250)
T COG0411 128 ERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALA 165 (250)
T ss_pred HHHHHHHHHcCCchhhcc-hhhcCChhHhHHHHHHHHHh
Confidence 457789999999998775 88999999999999999974
No 56
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=214.88 Aligned_cols=144 Identities=26% Similarity=0.429 Sum_probs=120.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
..+.++|+.++| +.+.+++++||+|++||+++++|||||||||.++++.|+.+|++|+|.+++.+++..+
T Consensus 3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP--------- 72 (243)
T COG1137 3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP--------- 72 (243)
T ss_pred cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC---------
Confidence 458899999999 6788999999999999999999999999999999999999999999999999885211
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCC-----C--H--HHHHHHHhhcC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-----P--Y--EKSRRQLGMFG 328 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~-----~--~--~~~~~~L~~~~ 328 (356)
+....+..+||++|++. .|-.+|+.++++..... . . .+..++|+.|.
T Consensus 73 ----------------------m~~RArlGigYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~ 128 (243)
T COG1137 73 ----------------------MHKRARLGIGYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH 128 (243)
T ss_pred ----------------------hHHHhhcCcccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc
Confidence 12223457999999974 88999999998654221 1 1 23457899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. +..+||||||+|+.|||+|.
T Consensus 129 i~hlr~~-~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 129 ITHLRDS-KAYSLSGGERRRVEIARALA 155 (243)
T ss_pred hHHHhcC-cccccccchHHHHHHHHHHh
Confidence 9998765 78999999999999999973
No 57
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-28 Score=234.09 Aligned_cols=141 Identities=25% Similarity=0.369 Sum_probs=117.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~----------- 71 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL----------- 71 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC-----------
Confidence 589999999994456799999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~ 331 (356)
.+ .++++||+||++ .+|+.+|+.+++.... +.+. ..+.++++.+|+.+
T Consensus 72 ---------------~~--------~~r~ig~v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 126 (356)
T PRK11650 72 ---------------EP--------ADRDIAMVFQNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP 126 (356)
T ss_pred ---------------CH--------HHCCEEEEeCCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 00 124799999997 5899999999986432 2222 34678899999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+++
T Consensus 127 ~~~~-~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 127 LLDR-KPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred HhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 7665 67999999999999999974
No 58
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=220.96 Aligned_cols=145 Identities=36% Similarity=0.562 Sum_probs=116.9
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
+++.++++++.|+++..+++++||+|.+|++++|+|+||||||||+++++|+++|++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~----------- 70 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS----------- 70 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc-----------
Confidence 468899999999655689999999999999999999999999999999999999999999999876531
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~~----~~~~~L~~~~l~ 330 (356)
.|+ ....+.++||+||+|+.+++.. |+.+.+.. ..+.+.+ ++.++|..+|+.
T Consensus 71 ---~~~-----------------~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~ 129 (235)
T COG1122 71 ---EKS-----------------LLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLE 129 (235)
T ss_pred ---hhh-----------------HHHhhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch
Confidence 000 1122567999999998877755 55554432 2344443 466789999999
Q ss_pred CccccCCCCCCChHHHHHHHHHHHc
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+..+ ++++.||||||||||||.++
T Consensus 130 ~~~~-r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 130 ELLD-RPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcc-CCccccCCcceeeHHhhHHH
Confidence 8865 47899999999999999986
No 59
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-28 Score=232.54 Aligned_cols=142 Identities=25% Similarity=0.441 Sum_probs=118.5
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 73 (351)
T PRK11432 4 KNFVVLKNITKRF-GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR--------- 73 (351)
T ss_pred CcEEEEEeEEEEE-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------
Confidence 3579999999999 566799999999999999999999999999999999999999999999998765310
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l 329 (356)
. ..++++||+||++ .+|+.+|+.+++.... +.+ .+.+.++++.+++
T Consensus 74 -----------------~--------~~~r~ig~vfQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl 126 (351)
T PRK11432 74 -----------------S--------IQQRDICMVFQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL 126 (351)
T ss_pred -----------------C--------HHHCCEEEEeCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC
Confidence 0 0135799999997 5899999999986432 222 2456788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..++ ++.+|||||||||+|||+|+
T Consensus 127 ~~~~~r-~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 127 AGFEDR-YVDQISGGQQQRVALARALI 152 (351)
T ss_pred chhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 887665 67999999999999999974
No 60
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=2.4e-28 Score=234.18 Aligned_cols=143 Identities=27% Similarity=0.461 Sum_probs=118.6
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
..++++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 11 ~~~~L~l~~l~~~~-~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~--------- 80 (375)
T PRK09452 11 LSPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH--------- 80 (375)
T ss_pred CCceEEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC---------
Confidence 35679999999999 56679999999999999999999999999999999999999999999999876520
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~ 328 (356)
..+ .++++||+||++ .+|+.+|+.+++.... +.+. ..+.++++.++
T Consensus 81 -----------------~~~--------~~r~ig~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~ 133 (375)
T PRK09452 81 -----------------VPA--------ENRHVNTVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ 133 (375)
T ss_pred -----------------CCH--------HHCCEEEEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 000 124699999997 5899999999986432 2222 34677899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..++ ++.+|||||||||+|||+++
T Consensus 134 l~~~~~~-~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 134 LEEFAQR-KPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred CchhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 9887765 66999999999999999974
No 61
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.2e-28 Score=204.11 Aligned_cols=146 Identities=28% Similarity=0.319 Sum_probs=118.4
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++++++..+.+ ..+|++|+|.|.+||.++||||||||||||+-+++|+..|++|+|.+.|+++.....+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd----- 80 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED----- 80 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH-----
Confidence 68899998877432 3699999999999999999999999999999999999999999999998876421111
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C----CCHHHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N----LPYEKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~----~~~~~~~~~L~~~~ 328 (356)
....-+..++|+|||.+ ++.|++|..|+++... + .....++++|+.+|
T Consensus 81 -----------------------~rA~~R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vG 135 (228)
T COG4181 81 -----------------------ARAALRARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG 135 (228)
T ss_pred -----------------------HHHHhhccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhC
Confidence 11111346899999986 5899999999986432 2 12355889999999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+......+ |.+|||||||||||||++
T Consensus 136 Lg~Rl~Hy-P~qLSGGEQQRVAiARAf 161 (228)
T COG4181 136 LGKRLTHY-PAQLSGGEQQRVALARAF 161 (228)
T ss_pred cccccccC-ccccCchHHHHHHHHHHh
Confidence 99888764 599999999999999986
No 62
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=2.8e-28 Score=232.43 Aligned_cols=141 Identities=26% Similarity=0.404 Sum_probs=117.8
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---------- 71 (353)
T TIGR03265 3 PYLSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---------- 71 (353)
T ss_pred cEEEEEEEEEEe-CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 468999999999 556799999999999999999999999999999999999999999999998765310
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~ 330 (356)
.+ .++++||+||++ .+|+.+|+.+++.... +.+ ...+.++++.+++.
T Consensus 72 ----------------~~--------~~r~ig~v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~ 125 (353)
T TIGR03265 72 ----------------PP--------QKRDYGIVFQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP 125 (353)
T ss_pred ----------------CH--------HHCCEEEEeCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 00 124699999997 5899999999986432 222 24577899999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..++ ++.+|||||||||+|||+|+
T Consensus 126 ~~~~~-~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 126 GSERK-YPGQLSGGQQQRVALARALA 150 (353)
T ss_pred chhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 87765 67999999999999999974
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=4.6e-28 Score=229.60 Aligned_cols=146 Identities=26% Similarity=0.338 Sum_probs=116.3
Q ss_pred cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
|++++|+++.|++ ...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~------- 73 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS------- 73 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-------
Confidence 5789999999952 236999999999999999999999999999999999999999999999998763100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~ 328 (356)
+ ... ...+.+|||+||++ .+++..|+.+++.... +.+. +.+.++|+.+|
T Consensus 74 -------------------~--~~l-~~~r~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vg 129 (343)
T TIGR02314 74 -------------------N--SEL-TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG 129 (343)
T ss_pred -------------------H--HHH-HHHhcCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 0 000 01135799999997 4788899999886432 2332 34668899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+|||||||||+|||+|+
T Consensus 130 L~~~~~~-~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 130 LGDKHDS-YPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred CchhhhC-ChhhCCHHHHHHHHHHHHHH
Confidence 9876665 67999999999999999974
No 64
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=4.2e-28 Score=216.74 Aligned_cols=146 Identities=32% Similarity=0.473 Sum_probs=114.4
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
+++++|+++.|+++ +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLR--------- 71 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcC---------
Confidence 47899999999543 46999999999999999999999999999999999999999999999987652100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~ 330 (356)
+ ... ...+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+|+.
T Consensus 72 -----------------~--~~~-~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 129 (216)
T TIGR00960 72 -----------------G--REI-PFLRRHIGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE 129 (216)
T ss_pred -----------------h--hHH-HHHHHhceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence 0 000 00124699999986 477788999987532 1222 24567889999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..+. ++.+|||||||||+||++++
T Consensus 130 ~~~~~-~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 130 GKAHA-LPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred hhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 76654 67999999999999999974
No 65
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=4.5e-28 Score=210.77 Aligned_cols=145 Identities=24% Similarity=0.368 Sum_probs=115.2
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|++..| +...+|+++||++.+||+++|+|+||+|||||+++|+|+.+|.+|+|.|+|.|+...+-
T Consensus 2 ~mL~v~~l~~~Y-G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~-------- 72 (237)
T COG0410 2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP-------- 72 (237)
T ss_pred CceeEEeEeecc-cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH--------
Confidence 579999999999 66789999999999999999999999999999999999999999999999999852211
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCC-----HHHHHHHHhhcCCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLP-----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~-----~~~~~~~L~~~~l~~ 331 (356)
....+..++|+||-. .+|+.+|+.||+... +... ....+++.+.|---.
T Consensus 73 -----------------------~~r~r~Gi~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lk 127 (237)
T COG0410 73 -----------------------HERARLGIAYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLK 127 (237)
T ss_pred -----------------------HHHHhCCeEeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHH
Confidence 111245699999975 599999999998642 1111 111445666665333
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...+++.++|||||||-+||||+|+
T Consensus 128 er~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 128 ERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHhcCcccCCChHHHHHHHHHHHHh
Confidence 3445678999999999999999974
No 66
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=1.1e-27 Score=224.79 Aligned_cols=143 Identities=29% Similarity=0.425 Sum_probs=117.2
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~~i~i~~l~k~~-~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--------- 74 (306)
T PRK13537 5 VAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--------- 74 (306)
T ss_pred CceEEEEeEEEEE-CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc---------
Confidence 4579999999999 567799999999999999999999999999999999999999999999998775310
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l 329 (356)
....+.++||++|++ .+++..|+.|++... .+.+. ..+.++++.+++
T Consensus 75 ------------------------~~~~~~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 128 (306)
T PRK13537 75 ------------------------ARHARQRVGVVPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL 128 (306)
T ss_pred ------------------------hHHHHhcEEEEeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 001235799999996 477889999987532 23332 345678999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... +++..|||||||||+||++++
T Consensus 129 ~~~~~-~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 129 ENKAD-AKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred chHhc-CchhhCCHHHHHHHHHHHHHh
Confidence 87655 478999999999999999974
No 67
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.3e-27 Score=222.45 Aligned_cols=142 Identities=35% Similarity=0.542 Sum_probs=118.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|++++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~----------- 72 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE----------- 72 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----------
Confidence 578899999993257899999999999999999999999999999999999999999999998765310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~ 331 (356)
....+.++||++|++. +++.+|+.|++... ++.+ .+.+.++++.||+..
T Consensus 73 ----------------------~~~~~~~igy~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~ 128 (293)
T COG1131 73 ----------------------PAKVRRRIGYVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED 128 (293)
T ss_pred ----------------------HHHHHhheEEEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch
Confidence 0112457999999974 89999999987542 3333 456889999999998
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. ++++..||+||||||+||.+|+
T Consensus 129 ~~-~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 129 KA-NKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred hh-CcchhhcCHHHHHHHHHHHHHh
Confidence 54 4578999999999999999974
No 68
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=3.6e-28 Score=203.13 Aligned_cols=137 Identities=34% Similarity=0.504 Sum_probs=111.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
+.++++.+.| +. .--.++++|+.||+++|+||||||||||+++++|+..|.+|.|.++|++..-.
T Consensus 2 l~L~~V~~~y-~~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~------------ 66 (231)
T COG3840 2 LALDDVRFSY-GH--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS------------ 66 (231)
T ss_pred ccccceEEee-Cc--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC------------
Confidence 5678899999 33 33567889999999999999999999999999999999999999999875311
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--C--C---CHHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--N--L---PYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~--~---~~~~~~~~L~~~~l~~~ 332 (356)
.| ..+-++++||+. ++|..+|+.+++.... + + ..+.+...+.++|+.+.
T Consensus 67 --------------~P--------~~RPVSmlFQEn--NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~ 122 (231)
T COG3840 67 --------------PP--------AERPVSMLFQEN--NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGF 122 (231)
T ss_pred --------------Cc--------ccCChhhhhhcc--ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhH
Confidence 11 124589999986 5999999999985321 1 2 23557788999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+ .|.+|||||||||||||+++
T Consensus 123 ~~R-LP~~LSGGqRQRvALARclv 145 (231)
T COG3840 123 LKR-LPGELSGGQRQRVALARCLV 145 (231)
T ss_pred hhh-CccccCchHHHHHHHHHHHh
Confidence 876 55999999999999999974
No 69
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-27 Score=228.92 Aligned_cols=142 Identities=29% Similarity=0.450 Sum_probs=118.2
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 17 ~~~l~l~~v~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~--------- 86 (377)
T PRK11607 17 TPLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--------- 86 (377)
T ss_pred CceEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 5679999999999 556799999999999999999999999999999999999999999999998765200
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l 329 (356)
. ..++.+||+||++ .+|+.+|+.|++.... +.+. .++.++++.+++
T Consensus 87 -----------------~--------~~~r~ig~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L 139 (377)
T PRK11607 87 -----------------P--------PYQRPINMMFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM 139 (377)
T ss_pred -----------------C--------HHHCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 0 1134799999997 4899999999986432 2222 346678999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+. ++.+|||||||||+|||+++
T Consensus 140 ~~~~~~-~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 140 QEFAKR-KPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred chhhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 887665 66999999999999999974
No 70
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-27 Score=212.91 Aligned_cols=139 Identities=31% Similarity=0.449 Sum_probs=112.4
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------------ 67 (213)
T cd03259 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV------------ 67 (213)
T ss_pred CeeeeeEEEe-CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
. ..+..++|++|++. +++..|+.+++... .+.. ...+.++++.+++.+.
T Consensus 68 ---------------------~-~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 123 (213)
T cd03259 68 ---------------------P-PERRNIGMVFQDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL 123 (213)
T ss_pred ---------------------c-hhhccEEEEcCchh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 0 01246999999873 67788999887532 1222 2346778999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ++.+|||||||||+||++++
T Consensus 124 ~~~-~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 124 LNR-YPHELSGGQQQRVALARALA 146 (213)
T ss_pred hhc-ChhhCCHHHHHHHHHHHHHh
Confidence 554 67999999999999999974
No 71
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.6e-27 Score=215.81 Aligned_cols=144 Identities=32% Similarity=0.434 Sum_probs=113.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~----------- 68 (235)
T cd03261 1 IELRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLS----------- 68 (235)
T ss_pred CeEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccC-----------
Confidence 4689999999 5567999999999999999999999999999999999999999999999987652100
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHhhcCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~~~L~~~~l~~ 331 (356)
+ .. ....+..++|++|++ .+++..|+.+++... . ..+. ..+.++++.+++..
T Consensus 69 ---------------~--~~-~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (235)
T cd03261 69 ---------------E--AE-LYRLRRRMGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG 128 (235)
T ss_pred ---------------h--hh-HHHHhcceEEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch
Confidence 0 00 001134699999986 477788999987532 1 1222 34567899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... +++.+|||||||||+||++++
T Consensus 129 ~~~-~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 129 AED-LYPAELSGGMKKRVALARALA 152 (235)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHh
Confidence 664 467999999999999999974
No 72
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=1.7e-27 Score=227.14 Aligned_cols=140 Identities=26% Similarity=0.351 Sum_probs=115.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~L~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~----------- 69 (353)
T PRK10851 2 SIEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL----------- 69 (353)
T ss_pred EEEEEEEEEEe-CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------
Confidence 37899999999 556799999999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------CCC----HHHHHHHHhhc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NLP----YEKSRRQLGMF 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~~~----~~~~~~~L~~~ 327 (356)
. ..++++||+||++ .+++.+|+.+++.... ..+ .+.+.++|+.+
T Consensus 70 ---------------~--------~~~r~i~~v~Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (353)
T PRK10851 70 ---------------H--------ARDRKVGFVFQHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV 124 (353)
T ss_pred ---------------C--------HHHCCEEEEecCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc
Confidence 0 0124699999996 5889999999986431 112 23567789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+..++ ++.+|||||||||+|||+|+
T Consensus 125 ~L~~~~~~-~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 125 QLAHLADR-YPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CCchhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 99876665 67999999999999999974
No 73
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.5e-28 Score=207.02 Aligned_cols=145 Identities=27% Similarity=0.299 Sum_probs=110.4
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC-----CceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-----GKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~-----G~i~~~g~~~~~~~~~~ 251 (356)
.+.++++|+++.| +.+.+|++||++|+++.++|++|||||||||||+++..+..... |+|.++|.++....
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~--- 80 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK--- 80 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC---
Confidence 3568999999999 78889999999999999999999999999999999999988766 89999988874110
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQL 324 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L 324 (356)
.-....|+++|+|||.|+ .|| +++.|++... .+... +.++..|
T Consensus 81 ---------------------------~d~~~lRr~vGMVFQkPn--PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sL 130 (253)
T COG1117 81 ---------------------------VDVVELRRRVGMVFQKPN--PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSL 130 (253)
T ss_pred ---------------------------CCHHHHHHHheeeccCCC--CCC-chHHHHHHHhHHhhccchHHHHHHHHHHH
Confidence 001122568999999985 566 8999998643 33332 2244455
Q ss_pred hhcCCC---CccccCCCCCCChHHHHHHHHHHHc
Q psy2684 325 GMFGLP---SYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 325 ~~~~l~---~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
....|= .+..++++..||||||||++|||++
T Consensus 131 k~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 131 KKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 555441 2222346788999999999999986
No 74
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-27 Score=215.71 Aligned_cols=149 Identities=28% Similarity=0.376 Sum_probs=115.7
Q ss_pred CCcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeee
Q psy2684 177 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++++|+++.|+++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~----- 77 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS----- 77 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-----
Confidence 4579999999999532 46999999999999999999999999999999999999999999999987653100
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGM 326 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~ 326 (356)
........+..++|++|++ .+++..|+.+++... .+.. ...+.++++.
T Consensus 78 -----------------------~~~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 132 (233)
T PRK11629 78 -----------------------SAAKAELRNQKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAA 132 (233)
T ss_pred -----------------------HHHHHHHHhccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0000000124699999986 477788999987532 1222 2346788999
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+.... ++.+|||||||||+||++++
T Consensus 133 ~gl~~~~~~-~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 133 VGLEHRANH-RPSELSGGERQRVAIARALV 161 (233)
T ss_pred cCCchhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 999876654 67999999999999999874
No 75
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=2.3e-27 Score=226.54 Aligned_cols=139 Identities=22% Similarity=0.378 Sum_probs=115.8
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC--CceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK--GKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~--G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 6 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~---------- 74 (362)
T TIGR03258 6 IRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA---------- 74 (362)
T ss_pred EEEEEEEEEE-CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC----------
Confidence 7899999999 55679999999999999999999999999999999999999999 9999998765200
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~ 330 (356)
. ..++++||+||++ .+|+.+|+.+++... .+.+. ..+.++++.+++.
T Consensus 75 ----------------~--------~~~r~ig~vfQ~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~ 128 (362)
T TIGR03258 75 ----------------P--------PHKRGLALLFQNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG 128 (362)
T ss_pred ----------------C--------HHHCCEEEEECCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 0 0124699999997 488999999998643 22332 3467789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..++ ++.+|||||||||+|||+|+
T Consensus 129 ~~~~~-~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 129 DAAAH-LPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred chhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 87665 67999999999999999974
No 76
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-27 Score=226.99 Aligned_cols=140 Identities=24% Similarity=0.378 Sum_probs=115.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~i~~l~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~----------- 70 (369)
T PRK11000 3 SVTLRNVTKAY-GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV----------- 70 (369)
T ss_pred EEEEEEEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-----------
Confidence 48999999999 566799999999999999999999999999999999999999999999998765200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~ 331 (356)
.+ .+.++||++|++ .+++.+|+.+++.... +.+. ..+.++++.+|+.+
T Consensus 71 ---------------~~--------~~~~i~~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 125 (369)
T PRK11000 71 ---------------PP--------AERGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH 125 (369)
T ss_pred ---------------CH--------hHCCEEEEeCCc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 00 124699999986 4888999999885422 2222 34677899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+. ++.+|||||||||+|||+|+
T Consensus 126 ~~~~-~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 126 LLDR-KPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred hhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 6654 67999999999999999974
No 77
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=3.9e-27 Score=215.62 Aligned_cols=139 Identities=30% Similarity=0.366 Sum_probs=114.7
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----------- 77 (257)
T PRK11247 10 GTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----------- 77 (257)
T ss_pred CCcEEEEEEEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----------
Confidence 4679999999999 5567999999999999999999999999999999999999999999998764321
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
..+..++|++|++ .+++..|+.+++.... ......+.++++.+|+.+....
T Consensus 78 --------------------------~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~ 129 (257)
T PRK11247 78 --------------------------EAREDTRLMFQDA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE 129 (257)
T ss_pred --------------------------HhhCceEEEecCc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC
Confidence 0124689999986 4677789999875422 1223567789999999876654
Q ss_pred CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||||||+||++++
T Consensus 130 -~~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 130 -WPAALSGGQKQRVALARALI 149 (257)
T ss_pred -ChhhCCHHHHHHHHHHHHHh
Confidence 67999999999999999974
No 78
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=3.2e-27 Score=224.08 Aligned_cols=144 Identities=30% Similarity=0.424 Sum_probs=117.3
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+.++++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 38 ~~~~i~i~nl~k~y-~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-------- 108 (340)
T PRK13536 38 STVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-------- 108 (340)
T ss_pred CceeEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--------
Confidence 45689999999999 566799999999999999999999999999999999999999999999998765210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
....+..+||++|++ .+++..|+.+++... ++... ..+.++++.++
T Consensus 109 -------------------------~~~~~~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~ 161 (340)
T PRK13536 109 -------------------------ARLARARIGVVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161 (340)
T ss_pred -------------------------hHHHhccEEEEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 001134699999986 477889999987532 23322 23557899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+...... ++.+|||||||||+||++++
T Consensus 162 L~~~~~~-~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 162 LESKADA-RVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred CchhhCC-ChhhCCHHHHHHHHHHHHHh
Confidence 9876554 78999999999999999974
No 79
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=2e-27 Score=224.78 Aligned_cols=151 Identities=22% Similarity=0.238 Sum_probs=117.4
Q ss_pred CCcEEEecceeeeCC------------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 177 PPVLGLHDVTFGYPG------------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~------------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
+++|+++|+++.|+. ...+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 568999999999952 14589999999999999999999999999999999999999999999998876
Q ss_pred ccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c--CCCH--
Q psy2684 245 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F--NLPY-- 317 (356)
Q Consensus 245 ~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~--~~~~-- 317 (356)
.... ..... ..+.+++|++|++...+++.+|+.+++... . +.+.
T Consensus 86 ~~~~----------------------------~~~~~-~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~ 136 (331)
T PRK15079 86 LGMK----------------------------DDEWR-AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQE 136 (331)
T ss_pred CcCC----------------------------HHHHH-HHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHH
Confidence 3100 00000 112469999999854578889999987532 2 2332
Q ss_pred --HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 --EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 --~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+.++|+.+++.....++++++|||||+|||+||++++
T Consensus 137 ~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~ 177 (331)
T PRK15079 137 VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI 177 (331)
T ss_pred HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 345678999999643334567999999999999999974
No 80
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.9e-27 Score=212.16 Aligned_cols=146 Identities=32% Similarity=0.430 Sum_probs=114.3
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~---------- 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR---------- 70 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC----------
Confidence 4789999999943467999999999999999999999999999999999999999999999987653100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~ 331 (356)
+ .. ....+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+++..
T Consensus 71 ----------------~--~~-~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 129 (214)
T TIGR02673 71 ----------------G--RQ-LPLLRRRIGVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH 129 (214)
T ss_pred ----------------H--HH-HHHHHhheEEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 0 00 001124699999987 367788999887532 1222 235678899999986
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... +++.+|||||||||+||++++
T Consensus 130 ~~~-~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 130 KAD-AFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred hhh-CChhhCCHHHHHHHHHHHHHh
Confidence 554 467999999999999999974
No 81
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=2.2e-27 Score=212.44 Aligned_cols=146 Identities=33% Similarity=0.424 Sum_probs=113.0
Q ss_pred EEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 180 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 180 l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
++++|+++.|+++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-------- 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS-------- 72 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc--------
Confidence 4689999999532 57999999999999999999999999999999999999999999999987652100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l 329 (356)
+ .......+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+|+
T Consensus 73 ------------------~--~~~~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 130 (218)
T cd03255 73 ------------------E--KELAAFRRRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL 130 (218)
T ss_pred ------------------h--hHHHHHHhhcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence 0 000000124699999986 367788999887532 2222 2356788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+... +++.+|||||||||+||++++
T Consensus 131 ~~~~~-~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 131 GDRLN-HYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred chhhh-cChhhcCHHHHHHHHHHHHHc
Confidence 87655 467999999999999999974
No 82
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.6e-27 Score=223.80 Aligned_cols=151 Identities=27% Similarity=0.283 Sum_probs=117.5
Q ss_pred CCcEEEecceeeeCC---------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccC
Q psy2684 177 PPVLGLHDVTFGYPG---------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD 247 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~---------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~ 247 (356)
.++|+++|+++.|+. ...++++|||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 357999999999952 24689999999999999999999999999999999999999999999998876310
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCC----HHH
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLP----YEK 319 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~----~~~ 319 (356)
. .+ .. ...+.+++|+||++...+++.+++.+++... . ... ...
T Consensus 83 ~------------~~----------------~~-~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~ 133 (327)
T PRK11308 83 D------------PE----------------AQ-KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREK 133 (327)
T ss_pred C------------HH----------------HH-HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHH
Confidence 0 00 00 0113469999999865688889998776431 1 222 234
Q ss_pred HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.++|+.+|+.....++++++|||||||||+||++|+
T Consensus 134 ~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~ 170 (327)
T PRK11308 134 ALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM 170 (327)
T ss_pred HHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH
Confidence 6788999999743334567999999999999999974
No 83
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-27 Score=212.83 Aligned_cols=140 Identities=25% Similarity=0.372 Sum_probs=112.5
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~------------ 67 (220)
T cd03265 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE------------ 67 (220)
T ss_pred CEEEEEEEEE-CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC------------
Confidence 4689999999 556799999999999999999999999999999999999999999999988654200
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
....+.+++|++|++ .+++..|+.+++... .+.. ...+.++++.+++.+.
T Consensus 68 ---------------------~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 124 (220)
T cd03265 68 ---------------------PREVRRRIGIVFQDL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA 124 (220)
T ss_pred ---------------------hHHHhhcEEEecCCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 001124699999987 367788998887432 2322 2346788999999865
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+ +++.+|||||||||+||++++
T Consensus 125 ~~-~~~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 125 AD-RLVKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred hh-CChhhCCHHHHHHHHHHHHHh
Confidence 54 477999999999999999974
No 84
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=3.8e-27 Score=221.02 Aligned_cols=142 Identities=30% Similarity=0.440 Sum_probs=114.9
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.+++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 71 (303)
T TIGR01288 3 VAIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR---------- 71 (303)
T ss_pred cEEEEEeEEEEe-CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc----------
Confidence 478999999999 566799999999999999999999999999999999999999999999998764200
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~ 330 (356)
....+.++||++|++ .+++..|+.+++... .+.+. ..+.++++.+++.
T Consensus 72 -----------------------~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~ 126 (303)
T TIGR01288 72 -----------------------ARLARVAIGVVPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE 126 (303)
T ss_pred -----------------------HHHHhhcEEEEeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh
Confidence 001134699999986 467788999987532 22332 2355789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... ++.+|||||||||+||++++
T Consensus 127 ~~~~~-~~~~LSgG~~qrv~la~al~ 151 (303)
T TIGR01288 127 SKADV-RVALLSGGMKRRLTLARALI 151 (303)
T ss_pred hHhcC-chhhCCHHHHHHHHHHHHHh
Confidence 76554 67999999999999999974
No 85
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=4.3e-27 Score=208.55 Aligned_cols=138 Identities=29% Similarity=0.405 Sum_probs=110.0
Q ss_pred EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG 261 (356)
Q Consensus 182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G 261 (356)
++|+++.|++++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--------------- 66 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--------------- 66 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---------------
Confidence 67899999432679999999999999999999999999999999999999999999998865420
Q ss_pred hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHhhcCCCCccccCCC
Q psy2684 262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
...+.+++|++|++...+ ...|+.+++.... ......+.++++.+++.+..+. ++
T Consensus 67 --------------------~~~~~~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 124 (205)
T cd03226 67 --------------------KERRKSIGYVMQDVDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-HP 124 (205)
T ss_pred --------------------HHhhcceEEEecChhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-Cc
Confidence 011246999999863223 3568998875421 2223567889999999876654 67
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
.+|||||||||+||++++
T Consensus 125 ~~LS~G~~qrv~laral~ 142 (205)
T cd03226 125 LSLSGGQKQRLAIAAALL 142 (205)
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 999999999999999874
No 86
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=3.3e-27 Score=211.22 Aligned_cols=141 Identities=22% Similarity=0.357 Sum_probs=113.7
Q ss_pred cEEEecceeeeCCCc----cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~----~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++|+++.|+ +. ++++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 72 (218)
T cd03266 1 MITADALTKRFR-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE------- 72 (218)
T ss_pred CeEEEEEEEecC-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-------
Confidence 478999999994 44 699999999999999999999999999999999999999999999998765200
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~ 327 (356)
....+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+
T Consensus 73 --------------------------~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (218)
T cd03266 73 --------------------------PAEARRRLGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL 124 (218)
T ss_pred --------------------------HHHHHhhEEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 001134699999997 477888999987432 2222 23467789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+.... ++.+|||||||||+||++++
T Consensus 125 ~l~~~~~~-~~~~LS~G~~qrv~laral~ 152 (218)
T cd03266 125 GMEELLDR-RVGGFSTGMRQKVAIARALV 152 (218)
T ss_pred CCHHHHhh-hhhhcCHHHHHHHHHHHHHh
Confidence 99876554 77999999999999999974
No 87
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.2e-27 Score=209.40 Aligned_cols=137 Identities=32% Similarity=0.472 Sum_probs=111.6
Q ss_pred EEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 180 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 180 l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
++++|+++.|++. +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~----------- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT----------- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc-----------
Confidence 4689999999431 57999999999999999999999999999999999999999999999886542
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l 329 (356)
..+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+++
T Consensus 70 --------------------------~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 70 --------------------------GPGPDRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL 121 (220)
T ss_pred --------------------------cccCcEEEEeccc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 0124699999987 367778999887532 2222 2356788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+.... ++.+|||||||||+||++++
T Consensus 122 ~~~~~~-~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 122 SGFENA-YPHQLSGGMRQRVALARALA 147 (220)
T ss_pred hhhhhC-CcccCCHHHHHHHHHHHHHH
Confidence 876554 67999999999999999974
No 88
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.3e-27 Score=211.62 Aligned_cols=140 Identities=29% Similarity=0.364 Sum_probs=112.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (239)
T cd03296 2 SIEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV----------- 69 (239)
T ss_pred EEEEEeEEEEE-CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 37899999999 456799999999999999999999999999999999999999999999998764210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC----C----HHHHHHHHhhc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL----P----YEKSRRQLGMF 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~----~----~~~~~~~L~~~ 327 (356)
. ..+..++|++|++ .+++..|+.+++.... .. . .+.+.++++.+
T Consensus 70 --------------------~---~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (239)
T cd03296 70 --------------------P---VQERNVGFVFQHY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV 124 (239)
T ss_pred --------------------C---ccccceEEEecCC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc
Confidence 0 0124699999986 3677789998875321 11 1 13456789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+... +++.+|||||||||+||++++
T Consensus 125 ~l~~~~~-~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 125 QLDWLAD-RYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred CChhhhh-cChhhCCHHHHHHHHHHHHHh
Confidence 9976555 467999999999999999974
No 89
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=5e-27 Score=208.60 Aligned_cols=139 Identities=25% Similarity=0.430 Sum_probs=114.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++.++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------------- 66 (208)
T cd03268 1 LKTNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK------------- 66 (208)
T ss_pred CEEEEEEEEE-CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccc-------------
Confidence 4689999999 55689999999999999999999999999999999999999999999998765420
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCccccC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
. ...+..++|++|++ .+++..|+.+++... .+.....+.++++.+++......
T Consensus 67 --------------------~-~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 122 (208)
T cd03268 67 --------------------N-IEALRRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK- 122 (208)
T ss_pred --------------------h-HHHHhhEEEecCCC--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-
Confidence 0 01124699999986 477788999987532 23345667889999999876554
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||||||+||++++
T Consensus 123 ~~~~LS~G~~qrv~la~al~ 142 (208)
T cd03268 123 KVKGFSLGMKQRLGIALALL 142 (208)
T ss_pred hHhhCCHHHHHHHHHHHHHh
Confidence 67999999999999999974
No 90
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.7e-27 Score=201.08 Aligned_cols=94 Identities=28% Similarity=0.461 Sum_probs=82.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.+.++.+|||||||||+|||||+++|+++|+|||||.|||+.+..+.+.+++ -+.|+|+|||++.|+.++||||+.|
T Consensus 130 a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 130 ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe
Confidence 4678999999999999999999999999999999999999998877666654 4789999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHH
Q psy2684 79 DMKKLFYYKGNFTLFKK 95 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~ 95 (356)
++|+++..+.+-+.|..
T Consensus 210 d~G~iie~g~p~~~f~~ 226 (240)
T COG1126 210 DQGKIIEEGPPEEFFDN 226 (240)
T ss_pred eCCEEEEecCHHHHhcC
Confidence 99999876533344443
No 91
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=212.88 Aligned_cols=137 Identities=28% Similarity=0.396 Sum_probs=112.5
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 ml~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------------ 67 (255)
T PRK11248 1 MLQISHLYADY-GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG------------ 67 (255)
T ss_pred CEEEEEEEEEe-CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC------------
Confidence 47899999999 45679999999999999999999999999999999999999999999998866420
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~ 331 (356)
....++|++|++ .+++..|+.+++... .+.. ...+.++++.+|+.+
T Consensus 68 -------------------------~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 120 (255)
T PRK11248 68 -------------------------PGAERGVVFQNE--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120 (255)
T ss_pred -------------------------CCCcEEEEeCCC--ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 012479999986 467778999887532 2222 234678899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... +++.+|||||||||+||++++
T Consensus 121 ~~~-~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 121 AEK-RYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred Hhh-CChhhCCHHHHHHHHHHHHHh
Confidence 555 467999999999999999974
No 92
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.4e-26 Score=206.58 Aligned_cols=143 Identities=28% Similarity=0.421 Sum_probs=115.6
Q ss_pred CCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 175 ~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
.++++++++|+++.| +++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 7 ~~~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~-------- 77 (214)
T PRK13543 7 TAPPLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR-------- 77 (214)
T ss_pred CCcceEEEeeEEEec-CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc--------
Confidence 345689999999999 45679999999999999999999999999999999999999999999999866420
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CHHHHHHHHhhcCCC
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PYEKSRRQLGMFGLP 330 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~~~~~~~L~~~~l~ 330 (356)
. ..+..++|++|++ .+++..|+.+++.... +. ..+.+++++..+++.
T Consensus 78 -----------------------~----~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~ 128 (214)
T PRK13543 78 -----------------------G----DRSRFMAYLGHLP--GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA 128 (214)
T ss_pred -----------------------h----hhhhceEEeecCc--ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh
Confidence 0 0123589999986 3677779998874321 22 234567889999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... +++.+|||||||||+||++++
T Consensus 129 ~~~~-~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 129 GYED-TLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred hhcc-CChhhCCHHHHHHHHHHHHHh
Confidence 7654 477999999999999999974
No 93
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=6.3e-27 Score=207.34 Aligned_cols=141 Identities=28% Similarity=0.410 Sum_probs=114.5
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~----------- 68 (204)
T PRK13538 1 MLEARNLACER-DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ----------- 68 (204)
T ss_pred CeEEEEEEEEE-CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-----------
Confidence 47899999999 556799999999999999999999999999999999999999999999998764200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-CCHHHHHHHHhhcCCCCccc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-~~~~~~~~~L~~~~l~~~~~ 334 (356)
....+.+++|++|++ .+++..|+.+++.... + .....+.++++.+|+.+..+
T Consensus 69 ----------------------~~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 124 (204)
T PRK13538 69 ----------------------RDEYHQDLLYLGHQP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED 124 (204)
T ss_pred ----------------------hHHhhhheEEeCCcc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh
Confidence 001124689999986 4677889999875322 2 23456778999999986554
Q ss_pred cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+||||||||++||++++
T Consensus 125 -~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 125 -VPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred -CChhhcCHHHHHHHHHHHHHh
Confidence 477999999999999999974
No 94
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=6.1e-27 Score=212.03 Aligned_cols=142 Identities=33% Similarity=0.464 Sum_probs=111.8
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------------ 67 (236)
T cd03219 1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL------------ 67 (236)
T ss_pred CeeeeeEEEE-CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-----------C---HHHHHH
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-----------P---YEKSRR 322 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-----------~---~~~~~~ 322 (356)
......+..++|++|++ .+++..|+.+++.... .. . ...+.+
T Consensus 68 -------------------~~~~~~~~~i~~v~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (236)
T cd03219 68 -------------------PPHEIARLGIGRTFQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEE 126 (236)
T ss_pred -------------------CHHHHHhcCEEEEeccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHH
Confidence 00000123589999986 3778889999875321 11 1 224667
Q ss_pred HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|+..... +++.+|||||||||+||++++
T Consensus 127 ~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 127 LLERVGLADLAD-RPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred HHHHcCccchhh-CChhhCCHHHHHHHHHHHHHh
Confidence 899999987655 477999999999999999974
No 95
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=8.6e-27 Score=215.14 Aligned_cols=147 Identities=27% Similarity=0.440 Sum_probs=115.3
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 5 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-------- 75 (269)
T PRK11831 5 ANLVDMRGVSFTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS-------- 75 (269)
T ss_pred cceEEEeCeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC--------
Confidence 3579999999999 5667999999999999999999999999999999999999999999999987652100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHhhcC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFG 328 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~~~L~~~~ 328 (356)
+ ... ...+.+++|++|++ .+++..|+.+++... . .... ..+.++|+.+|
T Consensus 76 ------------------~--~~~-~~~~~~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g 132 (269)
T PRK11831 76 ------------------R--SRL-YTVRKRMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG 132 (269)
T ss_pred ------------------h--hhH-HHHhhcEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcC
Confidence 0 000 01124699999986 467788999987532 1 1222 24567899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+|||||||||+||++++
T Consensus 133 l~~~~~~-~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 133 LRGAAKL-MPSELSGGMARRAALARAIA 159 (269)
T ss_pred ChhhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 9876554 67999999999999999974
No 96
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.5e-27 Score=223.27 Aligned_cols=146 Identities=26% Similarity=0.366 Sum_probs=115.2
Q ss_pred cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
|++++|+++.|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~------- 73 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS------- 73 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCC-------
Confidence 4789999999951 357999999999999999999999999999999999999999999999987753100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
+ ... ...+.++||++|++ .+++..|+.+++... .+.+. ..+.++++.+|
T Consensus 74 -------------------~--~~~-~~~~~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g 129 (343)
T PRK11153 74 -------------------E--KEL-RKARRQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVG 129 (343)
T ss_pred -------------------H--HHH-HHHhcCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 0 000 01134699999987 377888999987532 23322 34667899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+|||||||||+||++++
T Consensus 130 L~~~~~~-~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 130 LSDKADR-YPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred CchhhhC-ChhhCCHHHHHHHHHHHHHH
Confidence 9876554 67999999999999999974
No 97
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=6.8e-27 Score=208.45 Aligned_cols=139 Identities=25% Similarity=0.365 Sum_probs=111.6
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~------------ 67 (213)
T cd03301 1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL------------ 67 (213)
T ss_pred CEEEeeEEEE-CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
.. .+..++|++|++ .+++..|+.+++... .... .+.+.++++.+|+...
T Consensus 68 -------------------~~---~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 123 (213)
T cd03301 68 -------------------PP---KDRDIAMVFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL 123 (213)
T ss_pred -------------------Cc---ccceEEEEecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 00 124699999986 367788999887532 1222 2345678999999865
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+ +++.+||||||||++||++++
T Consensus 124 ~~-~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 124 LD-RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred Hh-CChhhCCHHHHHHHHHHHHHh
Confidence 55 477999999999999999874
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=1.1e-26 Score=210.43 Aligned_cols=141 Identities=29% Similarity=0.441 Sum_probs=112.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~----------- 68 (236)
T TIGR03864 1 ALEVAGLSFAY-GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA----------- 68 (236)
T ss_pred CEEEEeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC-----------
Confidence 47899999999 456799999999999999999999999999999999999999999999998764210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~ 331 (356)
. ......++|++|++ .+++..|+.+++... .+.. ...+.++++.+|+..
T Consensus 69 --------------------~--~~~~~~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 124 (236)
T TIGR03864 69 --------------------P--RAALARLGVVFQQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE 124 (236)
T ss_pred --------------------C--hhhhhhEEEeCCCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 0 00113699999986 366778998887532 1222 234677899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ++.+|||||||||+||++++
T Consensus 125 ~~~~-~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 125 RADD-KVRELNGGHRRRVEIARALL 148 (236)
T ss_pred hhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 6554 67999999999999999974
No 99
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=196.33 Aligned_cols=136 Identities=31% Similarity=0.495 Sum_probs=115.1
Q ss_pred cEEEecceeeeCCCcc--ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~--~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
++.+++++..| ++++ +++|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.++|..+. |
T Consensus 3 ~l~~~~~sl~y-~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~----------g 71 (259)
T COG4525 3 MLNVSHLSLSY-EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE----------G 71 (259)
T ss_pred eeehhheEEec-CCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc----------C
Confidence 46788999999 4555 999999999999999999999999999999999999999999999998775 3
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~----~~~~~~L~~~~l 329 (356)
|. ..-|.|||+. .++|.+++.+|+.. ..++.. +.+.+.|..+|+
T Consensus 72 Pg---------------------------aergvVFQ~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 72 PG---------------------------AERGVVFQNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred CC---------------------------ccceeEeccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCc
Confidence 31 2348899986 58999999998854 334443 346678999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
....++ .+.+|||||||||.|||+|
T Consensus 123 ~~~~~~-~i~qLSGGmrQRvGiARAL 147 (259)
T COG4525 123 EGAEHK-YIWQLSGGMRQRVGIARAL 147 (259)
T ss_pred cccccc-ceEeecchHHHHHHHHHHh
Confidence 987754 6789999999999999997
No 100
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.3e-27 Score=211.16 Aligned_cols=145 Identities=29% Similarity=0.409 Sum_probs=113.9
Q ss_pred cEEEecceeeeCCCc----cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~----~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++|+++.|+ ++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~i~~~~l~~~~~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 73 (233)
T cd03258 1 MIELKNVSKVFG-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS------ 73 (233)
T ss_pred CeEEecceEEcc-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC------
Confidence 478999999994 44 7999999999999999999999999999999999999999999999987653100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~ 327 (356)
+ ... ...+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+
T Consensus 74 --------------------~--~~~-~~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (233)
T cd03258 74 --------------------G--KEL-RKARRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV 128 (233)
T ss_pred --------------------H--HHH-HHHHhheEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 0 000 00124699999996 477788999987532 2222 23467889999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+.... ++.+|||||||||+||++++
T Consensus 129 ~l~~~~~~-~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 129 GLEDKADA-YPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred CChhhhhc-ChhhCCHHHHHHHHHHHHHh
Confidence 99876554 67999999999999999874
No 101
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=6.4e-27 Score=225.76 Aligned_cols=143 Identities=27% Similarity=0.445 Sum_probs=115.9
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~~L~~~nls~~y-~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~---------- 70 (402)
T PRK09536 2 PMIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---------- 70 (402)
T ss_pred ceEEEeeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----------
Confidence 468999999999 567899999999999999999999999999999999999999999999998765310
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-CC---HHHHHHHHhh
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-LP---YEKSRRQLGM 326 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~~---~~~~~~~L~~ 326 (356)
. ....+.++||++|++ .++..+|+.+++.... . .. .+.++++++.
T Consensus 71 ---------------------~-~~~~~~~ig~v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~ 126 (402)
T PRK09536 71 ---------------------S-ARAASRRVASVPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER 126 (402)
T ss_pred ---------------------C-HHHHhcceEEEccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHH
Confidence 0 001134699999986 4667789999875321 1 11 2356788999
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+..+ +++.+|||||||||+||++|+
T Consensus 127 vgl~~~~~-~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 127 TGVAQFAD-RPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred cCCchhhc-CChhhCCHHHHHHHHHHHHHH
Confidence 99987665 478999999999999999974
No 102
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=9.7e-28 Score=200.13 Aligned_cols=155 Identities=28% Similarity=0.438 Sum_probs=122.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
+.++++|+.++| +...+|+++|++..+|++++|||.|||||||+|+||.-+.+|+.|.|.++|..+....+..
T Consensus 5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~------ 77 (256)
T COG4598 5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD------ 77 (256)
T ss_pred cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCC------
Confidence 458999999999 7778999999999999999999999999999999999999999999999999886543221
Q ss_pred CCCchhhHHHHHhCCCCC-CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcC
Q psy2684 258 NGIGKSTFLNLLKGELTP-NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~-~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~ 328 (356)
|. +.+ +...+ ...+.+.|++||++ ++...+|+.|++... .+.+. +.++.+|.++|
T Consensus 78 -G~------------l~~ad~~q~-~r~Rs~L~mVFQ~F--NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVG 141 (256)
T COG4598 78 -GQ------------LKPADKRQL-QRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVG 141 (256)
T ss_pred -CC------------eeeCCHHHH-HHHHHHhhHhhhhc--chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhC
Confidence 11 111 11111 11234689999997 478899999998753 24443 45677899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+....+.+ |..||||||||++|||+|.
T Consensus 142 i~ek~~~Y-P~~LSGGQQQR~aIARaLa 168 (256)
T COG4598 142 IAEKADAY-PAHLSGGQQQRVAIARALA 168 (256)
T ss_pred chhhhhcC-ccccCchHHHHHHHHHHHh
Confidence 98877765 4789999999999999973
No 103
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.2e-26 Score=205.04 Aligned_cols=141 Identities=28% Similarity=0.379 Sum_probs=113.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++...
T Consensus 1 ml~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~----------- 68 (200)
T PRK13540 1 MLDVIELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD----------- 68 (200)
T ss_pred CEEEEEEEEEe-CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----------
Confidence 47899999999 456799999999999999999999999999999999999999999999998654200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
....+.+++|++|++ .+++..|+.+++.... ......+.++++.+++....+ +
T Consensus 69 ----------------------~~~~~~~i~~~~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 123 (200)
T PRK13540 69 ----------------------LCTYQKQLCFVGHRS--GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-Y 123 (200)
T ss_pred ----------------------HHHHHhheEEecccc--ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-C
Confidence 000124689999986 3667889999875421 122345788999999976554 5
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||+||++||++++
T Consensus 124 ~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 124 PCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred ChhhcCHHHHHHHHHHHHHh
Confidence 77999999999999999974
No 104
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.7e-27 Score=217.35 Aligned_cols=145 Identities=27% Similarity=0.385 Sum_probs=114.1
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.|+++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 72 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE---------- 72 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----------
Confidence 3689999999995446799999999999999999999999999999999999999999999998765310
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~ 330 (356)
. ....+..+||++|++...+ ...|+.+++... .+... ..+.++++.+|+.
T Consensus 73 ---------------------~-~~~~~~~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 129 (274)
T PRK13647 73 ---------------------N-EKWVRSKVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW 129 (274)
T ss_pred ---------------------C-HHHHHhhEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH
Confidence 0 0001246999999874233 357898887532 12222 3467789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+... +++.+|||||||||+||++++
T Consensus 130 ~~~~-~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 130 DFRD-KPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred HHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 6655 477999999999999999974
No 105
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=6e-27 Score=208.86 Aligned_cols=136 Identities=33% Similarity=0.442 Sum_probs=108.0
Q ss_pred EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG 261 (356)
Q Consensus 182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G 261 (356)
++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------------- 64 (213)
T cd03235 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------------- 64 (213)
T ss_pred cccceeEE-CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----------------
Confidence 68999999 4567999999999999999999999999999999999999999999999875431
Q ss_pred hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--------C---CHHHHHHHHhhcCCC
Q psy2684 262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------L---PYEKSRRQLGMFGLP 330 (356)
Q Consensus 262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--------~---~~~~~~~~L~~~~l~ 330 (356)
..+.+++|++|++....+...|+.+++..... . ....+.++++.+++.
T Consensus 65 ---------------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 123 (213)
T cd03235 65 ---------------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS 123 (213)
T ss_pred ---------------------HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH
Confidence 01246899999874222234789998754211 0 123467789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... +++.+|||||||||+||++++
T Consensus 124 ~~~~-~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 124 ELAD-RQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred HHHh-CCcccCCHHHHHHHHHHHHHH
Confidence 6554 477999999999999999974
No 106
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.2e-27 Score=207.88 Aligned_cols=137 Identities=26% Similarity=0.493 Sum_probs=111.8
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~~~~l~~~~-~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------------- 66 (210)
T cd03269 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI------------- 66 (210)
T ss_pred CEEEEEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-------------
Confidence 4689999999 45679999999999999999999999999999999999999999999998765420
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
..+..++|++|++ .+++..|+.+++... .+.. .+.+.++++.+|+.+.
T Consensus 67 -----------------------~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 121 (210)
T cd03269 67 -----------------------AARNRIGYLPEER--GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY 121 (210)
T ss_pred -----------------------HHHccEEEeccCC--cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH
Confidence 0124689999987 467788999987532 2222 2346778999999865
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ++.+|||||||||+||++++
T Consensus 122 ~~~-~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 122 ANK-RVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred HhC-cHhhCCHHHHHHHHHHHHHh
Confidence 554 67999999999999999874
No 107
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=1.6e-26 Score=204.32 Aligned_cols=140 Identities=29% Similarity=0.411 Sum_probs=113.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 67 (201)
T cd03231 1 LEADELTCER-DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ------------ 67 (201)
T ss_pred CEEEEEEEEe-CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc------------
Confidence 4689999999 556799999999999999999999999999999999999999999999987654200
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHhhcCCCCccccCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
....+.+++|++|++ .+++..|+.+++..... .....+.++++.+++.+... +++
T Consensus 68 ---------------------~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 123 (201)
T cd03231 68 ---------------------RDSIARGLLYLGHAP--GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPV 123 (201)
T ss_pred ---------------------cHHhhhheEEecccc--ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-Cch
Confidence 001134699999986 36677899998754322 24456788899999987654 477
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
.+||||||||++||++++
T Consensus 124 ~~LS~G~~qrl~laral~ 141 (201)
T cd03231 124 AQLSAGQQRRVALARLLL 141 (201)
T ss_pred hhCCHHHHHHHHHHHHHh
Confidence 999999999999999974
No 108
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=218.99 Aligned_cols=164 Identities=24% Similarity=0.296 Sum_probs=116.2
Q ss_pred CCCCcEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCC
Q psy2684 175 LPPPVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 175 ~~~~~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~ 250 (356)
.++++++++|+++.|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++......
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 345789999999999532 3599999999999999999999999999999999999999999999998775310000
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQ 323 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~ 323 (356)
. .+ ..+-..+ ........+.++||++|++...+++ .|+.+++... .+.+. ..+.++
T Consensus 97 ~-~~-~~~~~~~--------------~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~ 159 (320)
T PRK13631 97 H-EL-ITNPYSK--------------KIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFY 159 (320)
T ss_pred c-cc-ccccccc--------------ccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHH
Confidence 0 00 0000000 0000001235799999997545665 4888887432 12222 345678
Q ss_pred HhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|+. .... +++.+|||||||||+||++++
T Consensus 160 l~~~gL~~~~~~-~~~~~LSgGqkqRvaiAraL~ 192 (320)
T PRK13631 160 LNKMGLDDSYLE-RSPFGLSGGQKRRVAIAGILA 192 (320)
T ss_pred HHHcCCChhHhc-CCcccCCHHHHHHHHHHHHHH
Confidence 9999997 4444 467999999999999999974
No 109
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=1.3e-26 Score=207.95 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=113.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------- 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK---------- 70 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCC----------
Confidence 4789999999944467999999999999999999999999999999999999999999999987652100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
+ ... ...+..++|++|++ .+++..|+.+++... .+... ..+.++++.+++.+
T Consensus 71 ----------------~--~~~-~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 129 (222)
T PRK10908 71 ----------------N--REV-PFLRRQIGMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD 129 (222)
T ss_pred ----------------h--hHH-HHHHhheEEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 0 000 00134699999987 366778999887532 22222 23567899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ++.+|||||||||+||++++
T Consensus 130 ~~~~-~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 130 KAKN-FPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred hhhC-CchhCCHHHHHHHHHHHHHH
Confidence 6554 67999999999999999974
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=1.1e-26 Score=209.33 Aligned_cols=148 Identities=24% Similarity=0.233 Sum_probs=114.5
Q ss_pred CcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 178 PVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
++++++|+++.|+++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~------ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD------ 78 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC------
Confidence 579999999999532 25899999999999999999999999999999999999999999999987652100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~ 327 (356)
+ ..........++|++|++ .+++..|+.+++... .... .+++.++++.+
T Consensus 79 --------------------~--~~~~~~~~~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (228)
T PRK10584 79 --------------------E--EARAKLRAKHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL 134 (228)
T ss_pred --------------------H--HHHHHHHhheEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 0 000000124699999986 467778999887532 1222 23567889999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+.... ++.+|||||||||+||++++
T Consensus 135 ~l~~~~~~-~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 135 GLGKRLDH-LPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred CCHhHhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 99866554 67999999999999999974
No 111
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=1.1e-26 Score=204.73 Aligned_cols=140 Identities=30% Similarity=0.473 Sum_probs=112.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 67 (198)
T TIGR01189 1 LAARNLACSR-GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ------------ 67 (198)
T ss_pred CEEEEEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc------------
Confidence 4689999999 567799999999999999999999999999999999999999999999998764210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHhhcCCCCccccC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
....+..++|++|++ .+++..|+.+++.... ......+.++++.+++.+... +
T Consensus 68 ---------------------~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 123 (198)
T TIGR01189 68 ---------------------RDEPHRNILYLGHLP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-L 123 (198)
T ss_pred ---------------------hHHhhhheEEeccCc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-C
Confidence 001124689999975 4677789999875322 222345778899999987654 4
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||||||+||++++
T Consensus 124 ~~~~LS~G~~qrv~la~al~ 143 (198)
T TIGR01189 124 PAAQLSAGQQRRLALARLWL 143 (198)
T ss_pred ChhhcCHHHHHHHHHHHHHh
Confidence 77999999999999999974
No 112
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=1.5e-26 Score=207.44 Aligned_cols=147 Identities=30% Similarity=0.393 Sum_probs=113.4
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.|+++ .++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------- 73 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS------- 73 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-------
Confidence 47899999999532 46999999999999999999999999999999999999999999999987652100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~ 328 (356)
+ .......+..++|++|++ .+++..|+.+++... .... ...+.++++.+|
T Consensus 74 -------------------~--~~~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (221)
T TIGR02211 74 -------------------S--NERAKLRNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG 130 (221)
T ss_pred -------------------H--hHHHHHHHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 0 000000124699999986 467788999987532 1222 234678899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+.... ++.+|||||||||+||++++
T Consensus 131 l~~~~~~-~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 131 LEHRINH-RPSELSGGERQRVAIARALV 157 (221)
T ss_pred ChhhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 9876554 67999999999999999974
No 113
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=6.8e-27 Score=212.66 Aligned_cols=146 Identities=32% Similarity=0.432 Sum_probs=113.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR---------- 70 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCC----------
Confidence 4789999999942567999999999999999999999999999999999999999999999987652100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHH
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQ 323 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----------~~----~~~~~~~~ 323 (356)
+ ... ...+..++|++|++ .+++..|+.+++.... +. ...++.++
T Consensus 71 ----------------~--~~~-~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 71 ----------------G--KKL-RKLRRRIGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129 (243)
T ss_pred ----------------H--HHH-HHHHhheEEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHH
Confidence 0 000 00134699999986 3677889998874311 01 12346778
Q ss_pred HhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|+....+. ++.+|||||||||+||++++
T Consensus 130 l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 130 LERVGLADKAYQ-RADQLSGGQQQRVAIARALA 161 (243)
T ss_pred HHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHh
Confidence 999999865554 67999999999999999974
No 114
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=8.5e-27 Score=208.87 Aligned_cols=141 Identities=32% Similarity=0.459 Sum_probs=112.3
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|+++ +++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD----------- 69 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-----------
Confidence 4689999999432 6799999999999999999999999999999999999999999999998764200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
....+.+++|++|++ .+++..|+.+++... .+... ..+.++++.+++..
T Consensus 70 ----------------------~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 125 (220)
T cd03263 70 ----------------------RKAARQSLGYCPQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD 125 (220)
T ss_pred ----------------------hHHHhhhEEEecCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 001134699999986 467788999887532 22222 34667899999976
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+. ++.+|||||||||+||++++
T Consensus 126 ~~~~-~~~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 126 KANK-RARTLSGGMKRKLSLAIALI 149 (220)
T ss_pred HHhC-hhhhCCHHHHHHHHHHHHHh
Confidence 5554 67999999999999999874
No 115
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=1.7e-26 Score=216.32 Aligned_cols=141 Identities=28% Similarity=0.455 Sum_probs=115.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~----------- 69 (301)
T TIGR03522 2 SIRVSSLTKLY-GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN----------- 69 (301)
T ss_pred EEEEEEEEEEE-CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----------
Confidence 37899999999 567799999999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~----~~~~~~~L~~~~l~~ 331 (356)
....+.++||++|++ .+++..|+.+++.. .++.+ ...+.++++.||+.+
T Consensus 70 ----------------------~~~~~~~ig~~~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 125 (301)
T TIGR03522 70 ----------------------PKEVQRNIGYLPEHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP 125 (301)
T ss_pred ----------------------hHHHHhceEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 001134699999986 47888999998753 22333 245678899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++..|||||||||+||++++
T Consensus 126 ~~~~-~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 126 EQHK-KIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred HhcC-chhhCCHHHHHHHHHHHHHh
Confidence 6654 67999999999999999974
No 116
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=1.7e-26 Score=208.54 Aligned_cols=142 Identities=28% Similarity=0.457 Sum_probs=112.2
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------------ 67 (232)
T cd03218 1 LRAENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL------------ 67 (232)
T ss_pred CeEEEEEEEe-CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998764210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
......+..++|++|++ .+++..|+.+++... .... ...+.++++.+++...
T Consensus 68 -------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 126 (232)
T cd03218 68 -------------------PMHKRARLGIGYLPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL 126 (232)
T ss_pred -------------------CHhHHHhccEEEecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh
Confidence 00000123589999986 477788999887532 2222 1345678999999875
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ++.+|||||||||+||++++
T Consensus 127 ~~~-~~~~LS~G~~qrl~la~al~ 149 (232)
T cd03218 127 RKS-KASSLSGGERRRVEIARALA 149 (232)
T ss_pred hhC-ChhhCCHHHHHHHHHHHHHh
Confidence 554 67999999999999999974
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-26 Score=210.83 Aligned_cols=142 Identities=32% Similarity=0.374 Sum_probs=112.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~----------- 69 (258)
T PRK13548 2 MLEARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW----------- 69 (258)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC-----------
Confidence 58899999999 456799999999999999999999999999999999999999999999998654200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC----CHHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL----PYEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~----~~~~~~~~L~~~~l~~ 331 (356)
. ....+..++|++|++. +++..|+.+++.... .. ....+.++++.+|+.+
T Consensus 70 --------------------~-~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 126 (258)
T PRK13548 70 --------------------S-PAELARRRAVLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH 126 (258)
T ss_pred --------------------C-HHHhhhheEEEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh
Confidence 0 0001236899999863 556789999875421 11 1234677899999986
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ++.+|||||||||+||++++
T Consensus 127 ~~~~-~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 127 LAGR-DYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred HhcC-CcccCCHHHHHHHHHHHHHh
Confidence 5554 67999999999999999974
No 118
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-26 Score=215.50 Aligned_cols=149 Identities=29% Similarity=0.393 Sum_probs=113.2
Q ss_pred cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
|++++|+++.|+++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS------ 74 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 47899999999533 25999999999999999999999999999999999999999999999988753100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~ 327 (356)
+ .......+..+||++|++...++. .|+.+++... .+.+. ..+.++++.+
T Consensus 75 -------~---------------~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (288)
T PRK13643 75 -------K---------------QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV 131 (288)
T ss_pred -------c---------------cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc
Confidence 0 000001134799999997545665 5888887532 22332 2456789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.....++++..|||||||||+||++++
T Consensus 132 ~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 132 GLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred CCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 99643334578999999999999999974
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=7.4e-27 Score=208.36 Aligned_cols=145 Identities=29% Similarity=0.406 Sum_probs=112.9
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|++++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----------- 69 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR----------- 69 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCC-----------
Confidence 468999999954457999999999999999999999999999999999999999999999987652100
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
+ .. ....+..++|++|++ .+++..|+.+++... .+.. .+.+.++++.+|+.+.
T Consensus 70 ---------------~--~~-~~~~~~~i~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (214)
T cd03292 70 ---------------G--RA-IPYLRRKIGVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK 129 (214)
T ss_pred ---------------H--HH-HHHHHHheEEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 0 00 001124699999987 477888999987532 1222 2346678999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+. ++.+||||||||++||++++
T Consensus 130 ~~~-~~~~LS~G~~qrv~laral~ 152 (214)
T cd03292 130 HRA-LPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred hhC-ChhhcCHHHHHHHHHHHHHH
Confidence 554 67999999999999999974
No 120
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=2e-26 Score=212.41 Aligned_cols=147 Identities=22% Similarity=0.301 Sum_probs=112.6
Q ss_pred CcEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684 178 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME 249 (356)
Q Consensus 178 ~~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~ 249 (356)
++++++|+++.|++ +.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-- 80 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG-- 80 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC--
Confidence 57999999999942 24699999999999999999999999999999999999999999999998765210
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCC----HHHHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLP----YEKSR 321 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~----~~~~~ 321 (356)
.. ...+..++|++|++...+++..++.+++... . ... .+.+.
T Consensus 81 -----------------------------~~-~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 130 (267)
T PRK15112 81 -----------------------------DY-SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQII 130 (267)
T ss_pred -----------------------------ch-hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 00 0112369999998743456677887776421 1 122 23467
Q ss_pred HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++++.+|+.....++++.+|||||||||+||++++
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 165 (267)
T PRK15112 131 ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALI 165 (267)
T ss_pred HHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHH
Confidence 78999999533334467999999999999999874
No 121
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=3e-26 Score=206.33 Aligned_cols=149 Identities=28% Similarity=0.356 Sum_probs=111.1
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 73 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS------- 73 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccc-------
Confidence 47899999999433 27999999999999999999999999999999999999999999999987652100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--CHH---H-HHHHHhh
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PYE---K-SRRQLGM 326 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~~~---~-~~~~L~~ 326 (356)
+ ......+..++|++|++...+++..|+.+++... ... ... . +.++++.
T Consensus 74 -------------------~---~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (228)
T cd03257 74 -------------------R---RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVG 131 (228)
T ss_pred -------------------h---hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 0 0000123469999999743466778998887432 111 111 1 2367899
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++......+++.+|||||||||+||++++
T Consensus 132 ~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 132 VGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred CCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 999532233477999999999999999974
No 122
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.93 E-value=2.3e-26 Score=206.78 Aligned_cols=144 Identities=29% Similarity=0.424 Sum_probs=112.8
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~~i~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--------- 74 (225)
T PRK10247 5 SPLLQLQNVGYLA-GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL--------- 74 (225)
T ss_pred CceEEEeccEEee-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcC---------
Confidence 4579999999999 566799999999999999999999999999999999999999999999998664210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--CHHHHHHHHhhcCCCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PYEKSRRQLGMFGLPS 331 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~~~~~~~~L~~~~l~~ 331 (356)
.+ ...+..++|++|++. +++ .|+.+++... ... ....+.++++.+++..
T Consensus 75 -----------------~~------~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 75 -----------------KP------EIYRQQVSYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred -----------------CH------HHHHhccEEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 00 001246899999863 555 4898887532 111 2345678999999964
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
....+++.+|||||+|||+||++++
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 129 TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2233578999999999999999974
No 123
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=1.3e-26 Score=208.77 Aligned_cols=143 Identities=27% Similarity=0.330 Sum_probs=111.2
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc-----ccCCCceeEeeeccccCcCCeeee
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~-----~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++|.++....
T Consensus 1 i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~------ 73 (227)
T cd03260 1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD------ 73 (227)
T ss_pred CEEEEEEEEc-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc------
Confidence 4689999999 5567999999999999999999999999999999999999 999999999987652100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHhh
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGM 326 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~L~~ 326 (356)
+ . ....+.+++|++|++. ++ ..|+.+++... .+. . ...+.++++.
T Consensus 74 --------------------~---~-~~~~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (227)
T cd03260 74 --------------------V---D-VLELRRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRK 126 (227)
T ss_pred --------------------h---H-HHHHHhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHH
Confidence 0 0 0011346999999873 55 68999887532 121 1 2346778999
Q ss_pred cCCCCccccCC-CCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIP-IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~-~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+.....+ +.+|||||||||+||++++
T Consensus 127 ~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 127 AALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred cCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 99987655433 5899999999999999974
No 124
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-26 Score=218.37 Aligned_cols=150 Identities=18% Similarity=0.186 Sum_probs=113.9
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc----cCCCceeEeeeccccCcCCe
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT----PNKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~----p~~G~i~~~g~~~~~~~~~~ 251 (356)
+|+++|+++.|+.. ..+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~--- 79 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS--- 79 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC---
Confidence 68999999999532 369999999999999999999999999999999999998 48999999998763100
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~ 323 (356)
........+..++|+||++...+++.+++.+++... .+.. .+.+.++
T Consensus 80 -------------------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~ 134 (326)
T PRK11022 80 -------------------------EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDL 134 (326)
T ss_pred -------------------------HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000011112469999999865688888887665332 1222 2346788
Q ss_pred HhhcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY--AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+|+.+. ..++++++|||||+|||+||++++
T Consensus 135 L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~ 169 (326)
T PRK11022 135 LNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA 169 (326)
T ss_pred HHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence 999999742 223467999999999999999974
No 125
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=2.7e-26 Score=208.65 Aligned_cols=144 Identities=25% Similarity=0.365 Sum_probs=114.2
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 69 (242)
T TIGR03411 1 PILYLEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL---------- 69 (242)
T ss_pred CeEEEEeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC----------
Confidence 368999999999 456799999999999999999999999999999999999999999999998764210
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-----------C----CHHHHHH
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-----------L----PYEKSRR 322 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-----------~----~~~~~~~ 322 (356)
......+..++|++|++ .+++..|+.+++..... . ....+.+
T Consensus 70 ---------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (242)
T TIGR03411 70 ---------------------PEHQIARAGIGRKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEE 126 (242)
T ss_pred ---------------------CHHHHHhcCeeEecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHH
Confidence 00000123599999986 47888899998754211 0 1234677
Q ss_pred HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|+.+.... ++.+|||||+|||+||++++
T Consensus 127 ~l~~~~l~~~~~~-~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 127 VLETIGLADEADR-LAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred HHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 8999999876554 67999999999999999974
No 126
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-26 Score=214.23 Aligned_cols=145 Identities=30% Similarity=0.444 Sum_probs=112.4
Q ss_pred EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
++++|+++.|++. +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------- 75 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------- 75 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-------
Confidence 7899999999532 36999999999999999999999999999999999999999999999987753100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
.. ....+.++||++|++...++ ..|+.+++... .+.+. ..+.++++.+|
T Consensus 76 ---------------------~~--~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 131 (287)
T PRK13637 76 ---------------------VK--LSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVG 131 (287)
T ss_pred ---------------------cc--HHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcC
Confidence 00 00113579999999743444 46888887532 23332 34677899999
Q ss_pred CC--CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LP--SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~--~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+. +.. ++++.+|||||||||+||++++
T Consensus 132 L~~~~~~-~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 132 LDYEDYK-DKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred CCchhhc-cCCcccCCHHHHHHHHHHHHHH
Confidence 97 434 4577999999999999999974
No 127
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.4e-26 Score=210.25 Aligned_cols=145 Identities=30% Similarity=0.420 Sum_probs=111.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|++++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----------- 69 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK----------- 69 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC-----------
Confidence 468999999943267999999999999999999999999999999999999999999999987653100
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHHH
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQL 324 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----------~~----~~~~~~~~L 324 (356)
+ .. ....+..++|++|++ .+++..|+.+++.... +. ..+.+.+++
T Consensus 70 ---------------~--~~-~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (241)
T cd03256 70 ---------------G--KA-LRQLRRQIGMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL 129 (241)
T ss_pred ---------------H--hH-HHHHHhccEEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHH
Confidence 0 00 000124689999986 3677889998874311 11 123466789
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++...... ++.+|||||||||+||++++
T Consensus 130 ~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 130 ERVGLLDKAYQ-RADQLSGGQQQRVAIARALM 160 (241)
T ss_pred HHcCChhhhCC-CcccCCHHHHHHHHHHHHHh
Confidence 99999865554 67999999999999999874
No 128
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=1.3e-26 Score=206.36 Aligned_cols=141 Identities=34% Similarity=0.496 Sum_probs=109.0
Q ss_pred EecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260 (356)
Q Consensus 182 ~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~ 260 (356)
++|+++.|++. +.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------- 68 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL------------- 68 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC-------------
Confidence 67899999431 5799999999999999999999999999999999999999999999998765210
Q ss_pred chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCcc
Q psy2684 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~ 333 (356)
. ....+..++|++|++. ..++..|+.+++... .+.. ...+.++++.+++....
T Consensus 69 ------------------~-~~~~~~~i~~~~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 128 (211)
T cd03225 69 ------------------S-LKELRRKVGLVFQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR 128 (211)
T ss_pred ------------------C-HHHHHhhceEEecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh
Confidence 0 0001246899999863 224567898887532 1222 23466789999998655
Q ss_pred ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. +++.+|||||||||+||++++
T Consensus 129 ~-~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 129 D-RSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred c-CCcccCCHHHHHHHHHHHHHh
Confidence 4 467999999999999999974
No 129
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=1.5e-26 Score=206.13 Aligned_cols=143 Identities=25% Similarity=0.384 Sum_probs=112.4
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 67 (213)
T cd03262 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD------------ 67 (213)
T ss_pred CEEEEEEEEE-CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765200
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l~~ 331 (356)
.......+..++|++|++ .+++..|+.+++... .+... ..+.++++.+|+.+
T Consensus 68 ------------------~~~~~~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 127 (213)
T cd03262 68 ------------------KKNINELRQKVGMVFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD 127 (213)
T ss_pred ------------------chhHHHHHhcceEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh
Confidence 000001134699999987 367788999887432 12222 34567899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ++.+|||||+|||+||++++
T Consensus 128 ~~~~-~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 128 KADA-YPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred Hhhh-CccccCHHHHHHHHHHHHHh
Confidence 6554 67999999999999999874
No 130
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-26 Score=221.52 Aligned_cols=145 Identities=28% Similarity=0.362 Sum_probs=111.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++.+++...| +...+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~----------- 96 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS----------- 96 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCC-----------
Confidence 4555666666 4445899999999999999999999999999999999999999999999988763100
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
........+.++||++|++ .+++..|+.+++... .+.. .+.+.++++.+|+.+.
T Consensus 97 -----------------~~~l~~~~~~~igyv~Q~~--~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 97 -----------------DAELREVRRKKIAMVFQSF--ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY 157 (400)
T ss_pred -----------------HHHHHHHHhCCEEEEECCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh
Confidence 0000001124699999986 478889999988542 2222 2346778999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+. ++.+|||||||||+||++++
T Consensus 158 ~~~-~~~~LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 158 AHS-YPDELSGGMRQRVGLARALA 180 (400)
T ss_pred hhc-CcccCCHHHHHHHHHHHHHh
Confidence 654 67999999999999999974
No 131
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-26 Score=218.34 Aligned_cols=151 Identities=18% Similarity=0.196 Sum_probs=114.7
Q ss_pred CcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc----cCCCceeEeeeccccCcCC
Q psy2684 178 PVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT----PNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 178 ~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~----p~~G~i~~~g~~~~~~~~~ 250 (356)
++|+++|+++.|+. ...+++++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.|+|.++.....
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~- 80 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP- 80 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH-
Confidence 37899999999942 2469999999999999999999999999999999999997 589999999887531000
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c---C---CC----H
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F---N---LP----Y 317 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~---~---~~----~ 317 (356)
.......+..|+|+||++...+++.+|+.+++... . + .. .
T Consensus 81 ---------------------------~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (330)
T PRK15093 81 ---------------------------RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK 133 (330)
T ss_pred ---------------------------HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH
Confidence 00001112469999999865678888988876531 1 1 01 2
Q ss_pred HHHHHHHhhcCCCCcc--ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~--~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+.++|+.+||.+.. .++++.+|||||||||+||++|+
T Consensus 134 ~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~ 174 (330)
T PRK15093 134 RRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA 174 (330)
T ss_pred HHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence 3567899999997531 23467999999999999999974
No 132
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-26 Score=212.15 Aligned_cols=145 Identities=26% Similarity=0.360 Sum_probs=114.6
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.+++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 8 ~~~~l~i~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------- 79 (265)
T PRK10575 8 SDTTFALRNVSFRV-PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS------- 79 (265)
T ss_pred CCceEEEeeEEEEE-CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC-------
Confidence 34689999999999 4567999999999999999999999999999999999999999999999987652100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----C----C---CHHHHHHHH
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N----L---PYEKSRRQL 324 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~----~---~~~~~~~~L 324 (356)
....+..++|++|++. +++..|+.+++.... . . ....+.+++
T Consensus 80 -------------------------~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T PRK10575 80 -------------------------SKAFARKVAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI 132 (265)
T ss_pred -------------------------HHHHhhheEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHH
Confidence 0001236999999863 567789998875321 0 1 123467789
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++.+.... ++.+|||||||||+||++++
T Consensus 133 ~~~~l~~~~~~-~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 133 SLVGLKPLAHR-LVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred HHcCCHHHhcC-CcccCCHHHHHHHHHHHHHh
Confidence 99999765554 67999999999999999974
No 133
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.5e-26 Score=208.77 Aligned_cols=143 Identities=24% Similarity=0.435 Sum_probs=113.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 70 (241)
T PRK10895 3 TLTAKNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL----------- 70 (241)
T ss_pred eEEEeCcEEEe-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------
Confidence 68999999999 556799999999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----CCC----HHHHHHHHhhcCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----NLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~~~----~~~~~~~L~~~~l~ 330 (356)
......+..++|++|++ .+++..|+.+++.... ... ...+.++++.+++.
T Consensus 71 --------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 128 (241)
T PRK10895 71 --------------------PLHARARRGIGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128 (241)
T ss_pred --------------------CHHHHHHhCeEEeccCC--cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH
Confidence 00000124699999986 4677789999875421 111 23467789999997
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... +++.+|||||||||+||++++
T Consensus 129 ~~~~-~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 129 HLRD-SMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred HHhh-cchhhCCHHHHHHHHHHHHHh
Confidence 6554 467999999999999999974
No 134
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=3.9e-26 Score=202.73 Aligned_cols=139 Identities=32% Similarity=0.427 Sum_probs=113.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------------ 68 (207)
T PRK13539 2 MLEGEDLACVR-GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD------------ 68 (207)
T ss_pred EEEEEeEEEEE-CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc------------
Confidence 58999999999 45679999999999999999999999999999999999999999999998765310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCcccc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
+ . .+..++|++|.+ .+++..|+.+++... .+.....+.++++.+|+.... +
T Consensus 69 ----------------~---~----~~~~~~~~~~~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~ 122 (207)
T PRK13539 69 ----------------P---D----VAEACHYLGHRN--AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-H 122 (207)
T ss_pred ----------------h---h----hHhhcEEecCCC--cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-c
Confidence 0 0 123588999875 356778999887432 223345678899999998654 4
Q ss_pred CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+||||||||++||++++
T Consensus 123 ~~~~~LS~G~~qrl~la~al~ 143 (207)
T PRK13539 123 LPFGYLSAGQKRRVALARLLV 143 (207)
T ss_pred CChhhcCHHHHHHHHHHHHHh
Confidence 578999999999999999974
No 135
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-26 Score=208.26 Aligned_cols=142 Identities=25% Similarity=0.374 Sum_probs=111.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----------- 70 (241)
T PRK14250 3 EIEFKEVSYSS-FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI----------- 70 (241)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc-----------
Confidence 47899999999 456799999999999999999999999999999999999999999999998765200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCcccc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
. ....+..++|++|++. +++ .++.+++... .+....++.++++.+++.....+
T Consensus 71 --------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 126 (241)
T PRK14250 71 --------------------D-VIDLRRKIGMVFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT 126 (241)
T ss_pred --------------------C-hHHhhhcEEEEecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh
Confidence 0 0011346999999963 554 5888886532 12223457788999999632333
Q ss_pred CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|||||||||+||++++
T Consensus 127 ~~~~~LS~G~~qrl~la~al~ 147 (241)
T PRK14250 127 RDVKNLSGGEAQRVSIARTLA 147 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHh
Confidence 477999999999999999974
No 136
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=2.4e-26 Score=217.51 Aligned_cols=153 Identities=25% Similarity=0.292 Sum_probs=116.8
Q ss_pred CCCcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeeccccCcC
Q psy2684 176 PPPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNFGLDME 249 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~~~~~~ 249 (356)
..++++++|+++.|.. ...+++++||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.|+|.++....
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~- 87 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP- 87 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC-
Confidence 3568999999999942 246999999999999999999999999999999999999996 999999998763100
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSR 321 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~ 321 (356)
........+.+|+|+||++...+++.+++.+++... . +... ..+.
T Consensus 88 ---------------------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~ 140 (330)
T PRK09473 88 ---------------------------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESV 140 (330)
T ss_pred ---------------------------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 000001112469999999865688889988876432 2 2222 3466
Q ss_pred HHHhhcCCCCcc--ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~~~--~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++|+.+|+++.. ..+++++|||||+|||+||++++
T Consensus 141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~ 177 (330)
T PRK09473 141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL 177 (330)
T ss_pred HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 789999997521 23467999999999999999974
No 137
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=212.93 Aligned_cols=148 Identities=26% Similarity=0.396 Sum_probs=115.3
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++++|+++.|+++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~-------- 74 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR-------- 74 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc--------
Confidence 357999999999954567999999999999999999999999999999999999999999999987652100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l 329 (356)
.. ....+..+||++|++...++ ..|+.+++... .+.+. ..+.++++.+|+
T Consensus 75 ---------------------~~-~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL 131 (283)
T PRK13636 75 ---------------------KG-LMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI 131 (283)
T ss_pred ---------------------ch-HHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 00 00113469999998743333 46888887532 23332 346778999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+ +++.+||||||||++||++++
T Consensus 132 ~~~~~-~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 132 EHLKD-KPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred hhhhh-CCcccCCHHHHHHHHHHHHHH
Confidence 87665 478999999999999999974
No 138
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.9e-26 Score=208.44 Aligned_cols=142 Identities=28% Similarity=0.490 Sum_probs=112.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|++...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 68 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ------------ 68 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC------------
Confidence 46899999994325799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC-
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS- 331 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~- 331 (356)
.+ ...+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+++..
T Consensus 69 --------------~~------~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 126 (242)
T cd03295 69 --------------DP------VELRRKIGYVIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA 126 (242)
T ss_pred --------------Ch------HHhhcceEEEccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH
Confidence 00 01124689999986 477788999987532 2222 234678899999985
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 -YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 -~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... +++.+|||||||||+||++++
T Consensus 127 ~~~~-~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 127 EFAD-RYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred HHHh-cChhhCCHHHHHHHHHHHHHh
Confidence 444 477999999999999999974
No 139
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.1e-26 Score=209.80 Aligned_cols=145 Identities=27% Similarity=0.417 Sum_probs=114.2
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 72 (255)
T PRK11300 3 QPLLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL--------- 72 (255)
T ss_pred CceEEEeeEEEEE-CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCC---------
Confidence 3579999999999 566799999999999999999999999999999999999999999999998765310
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------------C---C--C--
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------------N---L--P-- 316 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------------~---~--~-- 316 (356)
......+..++|++|++ .+++..|+.+++.... . . .
T Consensus 73 ----------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (255)
T PRK11300 73 ----------------------PGHQIARMGVVRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES 128 (255)
T ss_pred ----------------------CHHHHHhcCeEEeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchh
Confidence 00000123589999986 4778889999875321 0 0 0
Q ss_pred --HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 317 --YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 317 --~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...+.++++.+|+...... ++.+|||||||||+||++++
T Consensus 129 ~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~ 169 (255)
T PRK11300 129 EALDRAATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMV 169 (255)
T ss_pred HHHHHHHHHHHhCChhhhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 1245677899999776554 77999999999999999974
No 140
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-26 Score=213.80 Aligned_cols=145 Identities=26% Similarity=0.416 Sum_probs=114.2
Q ss_pred CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
++++++|+++.|++. ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-------- 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE-------- 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC--------
Confidence 368999999999532 4599999999999999999999999999999999999999999999998765210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
.. ...+.++||++|++. .++...|+.+++... .+.+. ..+.++++.+|
T Consensus 75 -----------------------~~-~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g 129 (279)
T PRK13650 75 -----------------------NV-WDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG 129 (279)
T ss_pred -----------------------cH-HHHHhhceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC
Confidence 00 011246999999863 245567998887532 12332 34677899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+|||||||||+||++++
T Consensus 130 L~~~~~~-~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 130 MQDFKER-EPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred CHhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence 9876654 67999999999999999974
No 141
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-26 Score=212.58 Aligned_cols=146 Identities=28% Similarity=0.440 Sum_probs=115.4
Q ss_pred CCcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.++++++|+++.|++ .+++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-------- 74 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-------- 74 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC--------
Confidence 357999999999953 35699999999999999999999999999999999999999999999998875310
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
.. ...+..+||++|++. .++...|+.+++... .+.+. ..+.+++..+|
T Consensus 75 -----------------------~~-~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g 129 (279)
T PRK13635 75 -----------------------TV-WDVRRQVGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG 129 (279)
T ss_pred -----------------------cH-HHHhhheEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC
Confidence 00 011246999999873 245567999887532 12232 34677899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+.... ++..|||||||||+||++++
T Consensus 130 L~~~~~~-~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 130 MEDFLNR-EPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred ChhhhhC-CcccCCHHHHHHHHHHHHHH
Confidence 9876654 67999999999999999974
No 142
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-26 Score=214.79 Aligned_cols=163 Identities=23% Similarity=0.291 Sum_probs=113.5
Q ss_pred cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++|+++.|+++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.+.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~------ 75 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKK------ 75 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccc------
Confidence 37899999999533 25999999999999999999999999999999999999999999999876542100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcc-----eeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHH
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKG-----ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRR 322 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g-----~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~ 322 (356)
..| |.-+.+-+. ..... ......+..+||+||++..+++ ..|+.+++... .+.+. ..+.+
T Consensus 76 ----~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~ 147 (305)
T PRK13651 76 ----KTK--EKEKVLEKL-VIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAK 147 (305)
T ss_pred ----ccc--ccccccccc-ccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHH
Confidence 000 000000000 00000 0000113579999998754555 46898887532 23332 34678
Q ss_pred HHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+||. +... +++.+|||||||||+||++++
T Consensus 148 ~l~~~gL~~~~~~-~~~~~LSgGqkqrvalA~aL~ 181 (305)
T PRK13651 148 YIELVGLDESYLQ-RSPFELSGGQKRRVALAGILA 181 (305)
T ss_pred HHHHcCCChhhhh-CChhhCCHHHHHHHHHHHHHH
Confidence 89999997 4444 578999999999999999974
No 143
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=2.7e-26 Score=211.39 Aligned_cols=149 Identities=28% Similarity=0.306 Sum_probs=113.6
Q ss_pred cEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCC
Q psy2684 179 VLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 179 ~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~ 250 (356)
+++++|+++.|++ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-- 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD-- 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccC--
Confidence 5889999999952 357999999999999999999999999999999999999999999999987653100
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~ 322 (356)
.......+..++|++|++...+++..|+.+++... .... ...+.+
T Consensus 80 ---------------------------~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 132 (265)
T TIGR02769 80 ---------------------------RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE 132 (265)
T ss_pred ---------------------------HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00000013469999998643466778998876421 1222 235678
Q ss_pred HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|+.....++++.+|||||||||+||++++
T Consensus 133 ~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~ 166 (265)
T TIGR02769 133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALA 166 (265)
T ss_pred HHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999633333477999999999999999974
No 144
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=2.2e-26 Score=206.42 Aligned_cols=142 Identities=26% Similarity=0.358 Sum_probs=109.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++.++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------------ 67 (222)
T cd03224 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL------------ 67 (222)
T ss_pred CEEeeEEeec-CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-C----CHHHHHHHHhhc-CCCCcc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-L----PYEKSRRQLGMF-GLPSYA 333 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~----~~~~~~~~L~~~-~l~~~~ 333 (356)
......+..++|++|++ .+++..|+.+++..... . ....+.++++.+ ++....
T Consensus 68 -------------------~~~~~~~~~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 126 (222)
T cd03224 68 -------------------PPHERARAGIGYVPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERR 126 (222)
T ss_pred -------------------CHHHHHhcCeEEecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhh
Confidence 00000123599999986 47788899988753211 1 123355677777 466544
Q ss_pred ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. +++.+|||||||||+||++++
T Consensus 127 ~-~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 127 K-QLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred h-CchhhCCHHHHHHHHHHHHHh
Confidence 4 467999999999999999974
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-26 Score=212.68 Aligned_cols=145 Identities=34% Similarity=0.479 Sum_probs=112.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF----------- 69 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcc-----------
Confidence 478999999995445699999999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~ 331 (356)
......+..+||++|++... +...|+.+++... .+.. .+.+.++++.+|+.+
T Consensus 70 --------------------~~~~~~~~~i~~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 128 (274)
T PRK13644 70 --------------------SKLQGIRKLVGIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK 128 (274)
T ss_pred --------------------ccHHHHHhheEEEEEChhhh-cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH
Confidence 00000124699999987422 3457888887432 1222 234667899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+. ++..|||||||||+||++++
T Consensus 129 ~~~~-~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 129 YRHR-SPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HhcC-CcccCCHHHHHHHHHHHHHH
Confidence 6654 77999999999999999874
No 146
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-26 Score=214.91 Aligned_cols=148 Identities=24% Similarity=0.375 Sum_probs=112.4
Q ss_pred EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
++++|+++.|+++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~------- 75 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKT------- 75 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc-------
Confidence 7899999999532 36999999999999999999999999999999999999999999999988763100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
.+++ ....+.++||+||++...+++ .|+.+++... .+.+. ..+.++++.+|
T Consensus 76 ----~~~~-----------------~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g 133 (286)
T PRK13646 76 ----KDKY-----------------IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG 133 (286)
T ss_pred ----ccch-----------------HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC
Confidence 0000 001134799999987444554 4888887532 12332 34667899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+......+++.+|||||||||+||++++
T Consensus 134 L~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 134 FSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9733333477999999999999999974
No 147
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=213.58 Aligned_cols=148 Identities=29% Similarity=0.388 Sum_probs=112.8
Q ss_pred EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
++++|+++.|++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~------ 76 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK------ 76 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence 7899999999532 469999999999999999999999999999999999999999999999887531000
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
... ....+.++||++|++...++ ..|+.+++... .+.+. ..+.++++.+|
T Consensus 77 ---------------------~~~-~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g 133 (290)
T PRK13634 77 ---------------------NKK-LKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVG 133 (290)
T ss_pred ---------------------cch-HHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 000 00113469999999754455 46888887532 22332 34567899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.....++++.+|||||||||+||++++
T Consensus 134 L~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 134 LPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9743334578999999999999999974
No 148
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.9e-26 Score=204.13 Aligned_cols=139 Identities=30% Similarity=0.465 Sum_probs=111.1
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++..+++++||+|.+| +++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~~~~~~-~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------------ 66 (211)
T cd03264 1 LQLENLTKRY-GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ------------ 66 (211)
T ss_pred CEEEEEEEEE-CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc------------
Confidence 4689999999 4567999999999999 9999999999999999999999999999999988654210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~ 332 (356)
....+..++|++|++. +++..|+.+++... .+.. ...+.++++.+++.+.
T Consensus 67 ---------------------~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 123 (211)
T cd03264 67 ---------------------PQKLRRRIGYLPQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR 123 (211)
T ss_pred ---------------------hHHHHhheEEecCCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH
Confidence 0011346899999873 67788999887432 2222 2346778999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+ +++.+|||||||||+||++++
T Consensus 124 ~~-~~~~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 124 AK-KKIGSLSGGMRRRVGIAQALV 146 (211)
T ss_pred Hh-CchhhCCHHHHHHHHHHHHHh
Confidence 55 467999999999999999974
No 149
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=3.2e-26 Score=207.92 Aligned_cols=144 Identities=26% Similarity=0.378 Sum_probs=113.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 69 (240)
T PRK09493 1 MIEFKNVSKHF-GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK---------- 69 (240)
T ss_pred CEEEEeEEEEE-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC----------
Confidence 47899999999 4567999999999999999999999999999999999999999999999987653100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~l~ 330 (356)
.. ....+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+|+.
T Consensus 70 -------------------~~-~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 127 (240)
T PRK09493 70 -------------------VD-ERLIRQEAGMVFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA 127 (240)
T ss_pred -------------------hh-HHHHhhceEEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence 00 001134699999986 367778998887432 1222 13456789999997
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...+. ++.+|||||||||+||++++
T Consensus 128 ~~~~~-~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 128 ERAHH-YPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HHHhc-ChhhcCHHHHHHHHHHHHHh
Confidence 66554 67999999999999999974
No 150
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=2.3e-26 Score=203.98 Aligned_cols=143 Identities=29% Similarity=0.366 Sum_probs=110.9
Q ss_pred EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG 261 (356)
Q Consensus 182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G 261 (356)
++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------------- 66 (206)
T TIGR03608 1 LKNISKKF-GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN------------- 66 (206)
T ss_pred CcceEEEE-CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc-------------
Confidence 47899999 4567999999999999999999999999999999999999999999999987642000
Q ss_pred hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCccc
Q psy2684 262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~~ 334 (356)
........+..++|++|++ .+++..|+.+++... .+.. .+.+.++++.+|+.+..+
T Consensus 67 ---------------~~~~~~~~~~~i~~~~q~~--~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 129 (206)
T TIGR03608 67 ---------------SKKASKFRREKLGYLFQNF--ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129 (206)
T ss_pred ---------------hhhHHHHHHhCeeEEecch--hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc
Confidence 0000001134699999986 467788999887532 1222 244678899999977665
Q ss_pred cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ++.+|||||+||++||++++
T Consensus 130 ~-~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 130 Q-KIYELSGGEQQRVALARAIL 150 (206)
T ss_pred C-ChhhCCHHHHHHHHHHHHHH
Confidence 4 67999999999999999974
No 151
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=6.4e-26 Score=207.04 Aligned_cols=132 Identities=29% Similarity=0.414 Sum_probs=107.6
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------------- 65 (251)
T PRK09544 3 SLVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------------- 65 (251)
T ss_pred cEEEEeceEEEE-CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------------
Confidence 478999999999 456799999999999999999999999999999999999999999998752
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCC--CCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD--DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~--~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
+..++|++|++. +++. .++.+++....+....++.++++.+|+.+..+.
T Consensus 66 ---------------------------~~~i~~v~q~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 116 (251)
T PRK09544 66 ---------------------------KLRIGYVPQKLY--LDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA 116 (251)
T ss_pred ---------------------------ccCEEEeccccc--cccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC
Confidence 125899999863 3433 356665432223345667889999999876554
Q ss_pred CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||||||+||++++
T Consensus 117 -~~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 117 -PMQKLSGGETQRVLLARALL 136 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHh
Confidence 67999999999999999974
No 152
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=2.5e-26 Score=218.97 Aligned_cols=137 Identities=29% Similarity=0.400 Sum_probs=108.5
Q ss_pred eeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHH
Q psy2684 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 267 (356)
Q Consensus 188 ~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~ 267 (356)
.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~------------------- 61 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS------------------- 61 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC-------------------
Confidence 45 5667999999999999999999999999999999999999999999999998763100
Q ss_pred HHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCccccCCCCC
Q psy2684 268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRD 340 (356)
Q Consensus 268 ~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~ 340 (356)
...+....+..++|++|++ .+++.+|+.+++... .+.+ .+.+.++++.+||...... ++.+
T Consensus 62 ---------~~~~~~~rr~~i~~v~Q~~--~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~ 129 (363)
T TIGR01186 62 ---------PVELREVRRKKIGMVFQQF--ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-YPDE 129 (363)
T ss_pred ---------HHHHHHHHhCcEEEEECCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-Chhh
Confidence 0000001135799999986 588999999987542 2332 2456788999999876655 6799
Q ss_pred CChHHHHHHHHHHHcC
Q psy2684 341 LSGGQKARVALAELTL 356 (356)
Q Consensus 341 LSGGqkqRvalA~~~l 356 (356)
|||||||||+|||+++
T Consensus 130 LSGGq~QRV~lARAL~ 145 (363)
T TIGR01186 130 LSGGMQQRVGLARALA 145 (363)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999974
No 153
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=9.3e-26 Score=202.60 Aligned_cols=137 Identities=24% Similarity=0.416 Sum_probs=113.2
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~l~~v~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~------------- 66 (223)
T TIGR03740 1 LETKNLSKRF-GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR------------- 66 (223)
T ss_pred CEEEeEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc-------------
Confidence 4689999999 45679999999999999999999999999999999999999999999998765310
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCccccC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
.....++|++|++ .+++..|+.+++... .+.....+.++++.+|+.+..+.
T Consensus 67 -----------------------~~~~~~~~~~q~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 120 (223)
T TIGR03740 67 -----------------------KDLHKIGSLIESP--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK- 120 (223)
T ss_pred -----------------------cccccEEEEcCCC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-
Confidence 0013689999986 467778999887532 23455678889999999876554
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||+||++||++++
T Consensus 121 ~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 121 KAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred hHhhCCHHHHHHHHHHHHHh
Confidence 67999999999999999974
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.2e-26 Score=209.62 Aligned_cols=146 Identities=28% Similarity=0.442 Sum_probs=114.6
Q ss_pred CCcEEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.++++++|+++.|+ +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~-------- 76 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE-------- 76 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC--------
Confidence 35799999999995 245799999999999999999999999999999999999999999999998765210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
. ....+.+++|++|++. ..++..|+.+++... ..... ..+.++++.+|
T Consensus 77 -----------------------~-~~~~~~~i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (271)
T PRK13632 77 -----------------------N-LKEIRKKIGIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVG 131 (271)
T ss_pred -----------------------C-HHHHhcceEEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 0 0011346999999863 245567999987532 12222 23567899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+||||||||++||++++
T Consensus 132 l~~~~~~-~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 132 MEDYLDK-EPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred CHHHhhC-CcccCCHHHHHHHHHHHHHH
Confidence 9876654 67999999999999999974
No 155
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.6e-26 Score=202.32 Aligned_cols=137 Identities=28% Similarity=0.411 Sum_probs=109.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|+ ++. .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~------------ 65 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA------------ 65 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC------------
Confidence 36899999994 433 399999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C-----CHHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L-----PYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~-----~~~~~~~~L~~~~l~~~ 332 (356)
. ..+..++|++|++ .+++..|+.+++..... . ....+.++++.+|+.+.
T Consensus 66 ---------------------~-~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 121 (211)
T cd03298 66 ---------------------P-PADRPVSMLFQEN--NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL 121 (211)
T ss_pred ---------------------C-HhHccEEEEeccc--ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH
Confidence 0 0124699999987 36778899998753211 1 13356788999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+. ++.+||||||||++||++++
T Consensus 122 ~~~-~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 122 EKR-LPGELSGGERQRVALARVLV 144 (211)
T ss_pred HhC-CcccCCHHHHHHHHHHHHHh
Confidence 554 67999999999999999974
No 156
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=4.4e-26 Score=209.21 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=112.2
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec-----cccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN-----FGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~-----~~~~~~~~i 252 (356)
++++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 5 ~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~----- 78 (258)
T PRK11701 5 PLLSVRGLTKLY-GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL----- 78 (258)
T ss_pred ceEEEeeeEEEc-CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC-----
Confidence 479999999999 45679999999999999999999999999999999999999999999999865 2100
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~L 324 (356)
.........+..++|++|++...+++..++.+++... ... . ...+.+++
T Consensus 79 -----------------------~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 135 (258)
T PRK11701 79 -----------------------SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWL 135 (258)
T ss_pred -----------------------CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 0000000012469999999754566667776665321 111 1 23456789
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++......+++.+|||||||||+||++++
T Consensus 136 ~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~ 167 (258)
T PRK11701 136 ERVEIDAARIDDLPTTFSGGMQQRLQIARNLV 167 (258)
T ss_pred HHcCCChhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 99999742223477999999999999999874
No 157
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-26 Score=212.12 Aligned_cols=149 Identities=29% Similarity=0.392 Sum_probs=112.1
Q ss_pred cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++|+++.|++. +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------ 75 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPET------ 75 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 47899999999532 46999999999999999999999999999999999999999999999987653100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~ 327 (356)
.+ .. ....+..+||++|++...++ ..|+.+++... .... ...+.++++.+
T Consensus 76 ------~~---------------~~-~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (287)
T PRK13641 76 ------GN---------------KN-LKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV 132 (287)
T ss_pred ------cc---------------ch-HHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 00 00 00112469999998743345 46898887532 2222 23467789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+......+++.+|||||||||+||++++
T Consensus 133 gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 133 GLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred CCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99732334578999999999999999974
No 158
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.1e-25 Score=205.69 Aligned_cols=150 Identities=25% Similarity=0.401 Sum_probs=114.3
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 71 (250)
T PRK11264 3 AIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR---------- 71 (250)
T ss_pred cEEEeceEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc----------
Confidence 68999999999 4567999999999999999999999999999999999999999999999987753100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~l~ 330 (356)
...+. ... ....+..++|++|++ .+++..|+.+++... .... ...+.++++.+|+.
T Consensus 72 ~~~~~-------------~~~-~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 135 (250)
T PRK11264 72 SLSQQ-------------KGL-IRQLRQHVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135 (250)
T ss_pred cccch-------------hhH-HHHhhhhEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 00000 000 001134699999986 467778999887531 1222 23466789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...+ +++.+|||||||||+||++++
T Consensus 136 ~~~~-~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 136 GKET-SYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred chhh-CChhhCChHHHHHHHHHHHHh
Confidence 6554 467999999999999999974
No 159
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=8.5e-26 Score=206.00 Aligned_cols=143 Identities=26% Similarity=0.305 Sum_probs=111.5
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| ++..+++++||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~----- 74 (247)
T TIGR00972 1 AIEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK----- 74 (247)
T ss_pred CEEEEEEEEEE-CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc-----
Confidence 47899999999 4567999999999999999999999999999999999999998 999999987653100
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CC----HHHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LP----YEKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~----~~~~~~~L~ 325 (356)
.. ....+..++|++|++ .+++ .|+.+++... .+ .. ...+.++++
T Consensus 75 ------------------------~~-~~~~~~~i~~v~q~~--~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 126 (247)
T TIGR00972 75 ------------------------ID-VVELRRRVGMVFQKP--NPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLK 126 (247)
T ss_pred ------------------------cc-hHHHHhheEEEecCc--ccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHH
Confidence 00 001134699999986 3666 8999887532 22 12 134667899
Q ss_pred hcCCC----CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLP----SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~----~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+. .... +++.+|||||||||+||++++
T Consensus 127 ~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 127 KAALWDEVKDRLH-DSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HcCCCcchhhHhh-CCcccCCHHHHHHHHHHHHHh
Confidence 99997 4444 467999999999999999974
No 160
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.8e-26 Score=209.58 Aligned_cols=145 Identities=30% Similarity=0.477 Sum_probs=113.6
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.+++++|+++.|+++..+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 71 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE---------- 71 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 3689999999995445699999999999999999999999999999999999999999999998765210
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~ 330 (356)
+ . ...+..++|++|++...++ ..|+.+++... .+... ..+.++++.+|+.
T Consensus 72 -----~----------------~-~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 128 (277)
T PRK13652 72 -----N----------------I-REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE 128 (277)
T ss_pred -----C----------------H-HHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh
Confidence 0 0 0012468999999743344 56888887532 12332 2467789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.... ++.+||||||||++||++++
T Consensus 129 ~~~~~-~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 129 ELRDR-VPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred hHhcC-CcccCCHHHHHHHHHHHHHH
Confidence 76554 67999999999999999974
No 161
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.9e-26 Score=210.30 Aligned_cols=144 Identities=28% Similarity=0.342 Sum_probs=113.9
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+.+++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~~l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------- 74 (265)
T PRK10253 5 VARLRGEQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY--------- 74 (265)
T ss_pred ccEEEEEEEEEEE-CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC---------
Confidence 4578999999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-C-------CC---HHHHHHHHh
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-N-------LP---YEKSRRQLG 325 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~-------~~---~~~~~~~L~ 325 (356)
. ....+..++|++|++ .+++..++.+++.... . .. ...+.++++
T Consensus 75 ----------------------~-~~~~~~~i~~v~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 129 (265)
T PRK10253 75 ----------------------A-SKEVARRIGLLAQNA--TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ 129 (265)
T ss_pred ----------------------C-HHHHhhheEEeeccC--cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHH
Confidence 0 000123689999986 3666788988875321 0 11 234677899
Q ss_pred hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+.+... +++.+||||||||++||++++
T Consensus 130 ~~~l~~~~~-~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 130 ATGITHLAD-QSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred HcCCHHHhc-CCcccCChHHHHHHHHHHHHh
Confidence 999986555 477999999999999999974
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=6.7e-26 Score=207.87 Aligned_cols=158 Identities=24% Similarity=0.331 Sum_probs=116.5
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+..++++|+++.| +++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++..... ..+.+
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~- 79 (257)
T PRK10619 3 ENKLNVIDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD-KDGQL- 79 (257)
T ss_pred CccEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc-ccccc-
Confidence 3468999999999 46779999999999999999999999999999999999999999999999876531000 00000
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFG 328 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~ 328 (356)
.+.........+.+++|++|++ .+++..|+.+++... .... ...+.++++.+|
T Consensus 80 -----------------~~~~~~~~~~~~~~i~~v~q~~--~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 80 -----------------KVADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG 140 (257)
T ss_pred -----------------ccccchHHHHHhhceEEEecCc--ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Confidence 0000000001134699999986 477778999987431 1222 234677899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+......+++.+|||||||||+||++++
T Consensus 141 l~~~~~~~~~~~LS~G~~qrv~laral~ 168 (257)
T PRK10619 141 IDERAQGKYPVHLSGGQQQRVSIARALA 168 (257)
T ss_pred CChhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 9875434467999999999999999974
No 163
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=6e-26 Score=207.69 Aligned_cols=150 Identities=23% Similarity=0.259 Sum_probs=110.7
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec-----cccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN-----FGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~-----~~~~~~~~i 252 (356)
++++++|+++.| ++..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----- 75 (253)
T TIGR02323 2 PLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL----- 75 (253)
T ss_pred ceEEEeeeEEEe-CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC-----
Confidence 478999999999 45678999999999999999999999999999999999999999999998754 2100
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-C----CHHHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-L----PYEKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~----~~~~~~~~L 324 (356)
.+ .......+..++|++|++...++...++.+++... .. . ....+.+++
T Consensus 76 ---------------------~~--~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 132 (253)
T TIGR02323 76 ---------------------SE--AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWL 132 (253)
T ss_pred ---------------------CH--HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 00 00000012358999998743345556666655321 11 1 124567889
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++......+++..|||||||||+||++++
T Consensus 133 ~~l~l~~~~~~~~~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 133 EEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred HHcCCChhhhhcCchhcCHHHHHHHHHHHHHh
Confidence 99999742334478999999999999999974
No 164
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.1e-26 Score=210.17 Aligned_cols=146 Identities=26% Similarity=0.376 Sum_probs=113.4
Q ss_pred CcEEEecceeeeCC-----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~-----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.|++ ++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~----- 77 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDE----- 77 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccc-----
Confidence 57999999999953 24699999999999999999999999999999999999999999999998765210
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHh
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLG 325 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~ 325 (356)
......+..+||++|++...++ ..++.+++... .+.. ...+.++++
T Consensus 78 --------------------------~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~ 130 (280)
T PRK13633 78 --------------------------ENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLK 130 (280)
T ss_pred --------------------------ccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHH
Confidence 0001113469999999743344 35777776432 1222 234677899
Q ss_pred hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+...... ++.+|||||||||+||++++
T Consensus 131 ~~gL~~~~~~-~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 131 KVGMYEYRRH-APHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HCCCHhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence 9999876654 77999999999999999974
No 165
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.7e-26 Score=209.89 Aligned_cols=145 Identities=27% Similarity=0.369 Sum_probs=110.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
|++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ml~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---------- 69 (271)
T PRK13638 1 MLATSDLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK---------- 69 (271)
T ss_pred CeEEEEEEEEc-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccccc----------
Confidence 47899999999 4567999999999999999999999999999999999999999999999987652100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
.. ....+..++|++|++... +...++.+++... .+... ..+.++++.+|+.+
T Consensus 70 -------------------~~-~~~~~~~i~~v~q~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (271)
T PRK13638 70 -------------------RG-LLALRQQVATVFQDPEQQ-IFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH 128 (271)
T ss_pred -------------------CC-HHHHHhheEEEeeChhhc-cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh
Confidence 00 001124699999986422 2345676665421 22222 23567899999977
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... +++.+||||||||++||++++
T Consensus 129 ~~~-~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 129 FRH-QPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred Hhc-CCchhCCHHHHHHHHHHHHHH
Confidence 655 477999999999999999974
No 166
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.9e-26 Score=208.33 Aligned_cols=150 Identities=24% Similarity=0.315 Sum_probs=117.0
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-c----CCCceeEeeeccccCcCC
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-P----NKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p----~~G~i~~~g~~~~~~~~~ 250 (356)
+|+++|++..|... ..+++||||+|.+||++||||.|||||||+.++|+|+++ | .+|+|.|+|.++....
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~-- 78 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS-- 78 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC--
Confidence 47899999999542 369999999999999999999999999999999999998 3 5789999988753110
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCC-C----HHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNL-P----YEKSR 321 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~-~----~~~~~ 321 (356)
.......+..+|+|+||+|...|+|-+++.+.+... ... . .+.+.
T Consensus 79 --------------------------~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~ 132 (316)
T COG0444 79 --------------------------EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI 132 (316)
T ss_pred --------------------------HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 011111234579999999988999999998776542 122 2 23577
Q ss_pred HHHhhcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++|+.+|+++. ..+.+|++|||||+|||+||.+++
T Consensus 133 ~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala 169 (316)
T COG0444 133 ELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA 169 (316)
T ss_pred HHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh
Confidence 89999999864 334567999999999999999874
No 167
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=210.00 Aligned_cols=146 Identities=32% Similarity=0.502 Sum_probs=113.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~---------- 70 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK---------- 70 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcccc----------
Confidence 4789999999954456999999999999999999999999999999999999999999999987652100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
......+..++|++|++...++ ..|+.+++... .+... ..+.++++.+++.+
T Consensus 71 --------------------~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 129 (275)
T PRK13639 71 --------------------KSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG 129 (275)
T ss_pred --------------------chHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 0000113469999999743344 45888887532 12221 34677899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+ +++.+|||||+||++||++++
T Consensus 130 ~~~-~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 130 FEN-KPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred hhc-CChhhCCHHHHHHHHHHHHHh
Confidence 665 477999999999999999974
No 168
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=3.9e-26 Score=230.15 Aligned_cols=142 Identities=39% Similarity=0.554 Sum_probs=113.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~------------ 401 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS------------ 401 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh------------
Confidence 48999999999655679999999999999999999999999999999999999999999999988631
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccc---
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAH--- 334 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~--- 334 (356)
+....+.+++|++|++. +| +.|+.||+... ...+++++++.++..++.+...
T Consensus 402 ---------------------~~~~lr~~i~~V~Q~~~--lF-~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp 457 (529)
T TIGR02868 402 ---------------------LQDELRRRISVFAQDAH--LF-DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLP 457 (529)
T ss_pred ---------------------HHHHHHhheEEEccCcc--cc-cccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 11112457999999983 55 55899998653 3457778888888877643221
Q ss_pred ---cCC----CCCCChHHHHHHHHHHHcC
Q psy2684 335 ---TIP----IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ---~~~----~~~LSGGqkqRvalA~~~l 356 (356)
+.. -..||||||||++|||+++
T Consensus 458 ~GldT~ige~G~~LSGGQrQRiaiARall 486 (529)
T TIGR02868 458 DGLDTVLGEGGARLSGGERQRLALARALL 486 (529)
T ss_pred ccccchhccccCcCCHHHHHHHHHHHHHh
Confidence 111 2469999999999999975
No 169
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.4e-26 Score=206.63 Aligned_cols=148 Identities=26% Similarity=0.401 Sum_probs=113.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--------- 71 (242)
T PRK11124 2 SIQLNGINCFY-GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT--------- 71 (242)
T ss_pred EEEEEeeEEEE-CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccc---------
Confidence 47899999999 55679999999999999999999999999999999999999999999999876521000
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH-h---cCCC----HHHHHHHHhhcCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-L---FNLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~-~---~~~~----~~~~~~~L~~~~l~ 330 (356)
..... ....+..++|++|++ .+++..|+.+++.. . .+.. ...+.++++.+|+.
T Consensus 72 ----------------~~~~~-~~~~~~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 132 (242)
T PRK11124 72 ----------------PSDKA-IRELRRNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK 132 (242)
T ss_pred ----------------cchhh-HHHHHhheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 00000 001124699999986 47778899998742 1 1222 23467789999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... ++.+|||||||||+||++++
T Consensus 133 ~~~~~-~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 133 PYADR-FPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred hhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence 76554 67999999999999999974
No 170
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=204.75 Aligned_cols=143 Identities=25% Similarity=0.321 Sum_probs=111.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~------ 75 (250)
T PRK14247 3 KIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM------ 75 (250)
T ss_pred eEEEEeeEEEE-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC------
Confidence 58999999999 456799999999999999999999999999999999999984 699999998765210
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC--C----HHHHHHHH
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--P----YEKSRRQL 324 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~--~----~~~~~~~L 324 (356)
.. ...+..+||++|++. +++..|+.+++.... .. . .+.+.+++
T Consensus 76 -------------------------~~-~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l 127 (250)
T PRK14247 76 -------------------------DV-IELRRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWAL 127 (250)
T ss_pred -------------------------CH-HHHhccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 00 011346999999873 677889999875321 11 1 13456789
Q ss_pred hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++... ..++++.+|||||||||+||++++
T Consensus 128 ~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 128 EKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred HHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 99998531 224577999999999999999974
No 171
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.5e-26 Score=207.71 Aligned_cols=142 Identities=28% Similarity=0.374 Sum_probs=112.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|++++| ++..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (255)
T PRK11231 2 TLRTENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML----------- 69 (255)
T ss_pred EEEEEeEEEEE-CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-----------
Confidence 47899999999 556799999999999999999999999999999999999999999999998764200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cCC----CHHHHHHHHhhc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FNL----PYEKSRRQLGMF 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~~----~~~~~~~~L~~~ 327 (356)
.. ...+..++|++|++ .+++..|+.+++... ... ....+.++++.+
T Consensus 70 --------------------~~-~~~~~~i~~~~q~~--~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 70 --------------------SS-RQLARRLALLPQHH--LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT 126 (255)
T ss_pred --------------------CH-HHHhhheEEecccC--CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc
Confidence 00 00123589999986 366677898887531 111 123466789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+..... +++.+|||||+|||+||++++
T Consensus 127 ~l~~~~~-~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 127 RINHLAD-RRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred CCHHHHc-CCcccCCHHHHHHHHHHHHHh
Confidence 9976555 467999999999999999974
No 172
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=1.3e-25 Score=204.29 Aligned_cols=143 Identities=23% Similarity=0.328 Sum_probs=108.6
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~---------- 69 (243)
T TIGR01978 1 LKIKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL---------- 69 (243)
T ss_pred CeEeeEEEEE-CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCC----------
Confidence 4689999999 4567999999999999999999999999999999999995 79999999998765210
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-------CC----HHHHHHH
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-------LP----YEKSRRQ 323 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-------~~----~~~~~~~ 323 (356)
......+..++|++|++. +++..|+.+++.... . .. .+.+.++
T Consensus 70 ---------------------~~~~~~~~~i~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (243)
T TIGR01978 70 ---------------------EPDERARAGLFLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAK 126 (243)
T ss_pred ---------------------CHHHhhccceEeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 000001234899999873 677888888764321 0 11 1346678
Q ss_pred HhhcCCCCccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSYAHTIPIR-DLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~~~~~~~~-~LSGGqkqRvalA~~~l 356 (356)
++.+++......+++. .|||||||||+||++++
T Consensus 127 l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred HHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 9999997433334566 59999999999999974
No 173
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=213.31 Aligned_cols=143 Identities=27% Similarity=0.359 Sum_probs=111.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
||++ |+++.| +++. + ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~-~l~k~~-~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~---------- 66 (352)
T PRK11144 1 MLEL-NFKQQL-GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE---------- 66 (352)
T ss_pred CeEE-EEEEEe-CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc----------
Confidence 4677 999999 4443 3 899999999999999999999999999999999999999999987652100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIP 337 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~ 337 (356)
........+.+++|++|++ .+++.+|+.+++.... .....++.++++.+|+.+..+. +
T Consensus 67 ------------------~~~~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-~ 125 (352)
T PRK11144 67 ------------------KGICLPPEKRRIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-Y 125 (352)
T ss_pred ------------------cccccchhhCCEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-C
Confidence 0000001134799999986 4788999999885432 2234567889999999876654 6
Q ss_pred CCCCChHHHHHHHHHHHcC
Q psy2684 338 IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 338 ~~~LSGGqkqRvalA~~~l 356 (356)
+.+|||||||||+||++++
T Consensus 126 ~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 126 PGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 7999999999999999974
No 174
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=208.83 Aligned_cols=146 Identities=29% Similarity=0.437 Sum_probs=114.5
Q ss_pred CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC---CceeEeeeccccCcCCee
Q psy2684 177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK---GKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~---G~i~~~g~~~~~~~~~~i 252 (356)
+.+++++|+++.|++. ..+++++||+|.+||+++|+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~----- 77 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK----- 77 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-----
Confidence 3579999999999532 469999999999999999999999999999999999999998 8999998765210
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHh
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLG 325 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~ 325 (356)
.. ...+.++||++|++. .++...|+.+++... .+.+. +.+.++++
T Consensus 78 --------------------------~~-~~~~~~ig~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 129 (282)
T PRK13640 78 --------------------------TV-WDIREKVGIVFQNPD-NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA 129 (282)
T ss_pred --------------------------CH-HHHHhheEEEEECHH-HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHH
Confidence 00 011246999999973 245567999987532 22332 34677899
Q ss_pred hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+.+.... ++.+|||||+|||+||++++
T Consensus 130 ~~~L~~~~~~-~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 130 DVGMLDYIDS-EPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HCCChhHhcC-CcccCCHHHHHHHHHHHHHH
Confidence 9999876554 67999999999999999974
No 175
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.1e-26 Score=208.28 Aligned_cols=144 Identities=27% Similarity=0.364 Sum_probs=112.1
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~ 260 (356)
.++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 26 ~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~------------ 92 (269)
T cd03294 26 SKEEILKKT-GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS------------ 92 (269)
T ss_pred hhhhhhhhc-CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccC------------
Confidence 567999999 6678999999999999999999999999999999999999999999999987652100
Q ss_pred chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCcc
Q psy2684 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~ 333 (356)
+ .......+.+++|++|++ .+++..|+.+++... .+.. ...+.++++.+++.+..
T Consensus 93 --------------~--~~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 154 (269)
T cd03294 93 --------------R--KELRELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE 154 (269)
T ss_pred --------------h--hhhhhhhcCcEEEEecCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh
Confidence 0 000001124699999986 467788999987532 1222 23466789999998665
Q ss_pred ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. ++.+|||||||||+||++++
T Consensus 155 ~~-~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 155 HK-YPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hC-CcccCCHHHHHHHHHHHHHh
Confidence 54 67999999999999999974
No 176
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=8.9e-26 Score=203.66 Aligned_cols=142 Identities=25% Similarity=0.324 Sum_probs=109.5
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 67 (230)
T TIGR03410 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL------------ 67 (230)
T ss_pred CEEEeEEEEe-CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC-HHHHHHHHhhcC-CCCccc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP-YEKSRRQLGMFG-LPSYAH 334 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~-~~~~~~~L~~~~-l~~~~~ 334 (356)
......+..++|++|++ .+++..|+.+++.... ... ...+.++++.++ +.....
T Consensus 68 -------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 126 (230)
T TIGR03410 68 -------------------PPHERARAGIAYVPQGR--EIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLG 126 (230)
T ss_pred -------------------CHHHHHHhCeEEeccCC--cccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhh
Confidence 00000124699999987 3677889998875321 122 233466777776 444444
Q ss_pred cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|||||||||+||++++
T Consensus 127 -~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 127 -RRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred -CChhhCCHHHHHHHHHHHHHh
Confidence 477999999999999999974
No 177
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.92 E-value=1.3e-25 Score=206.63 Aligned_cols=148 Identities=24% Similarity=0.363 Sum_probs=113.9
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeeccccCcCCeeee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~~~~~~~~ial 254 (356)
++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 3 ~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~------- 74 (262)
T PRK09984 3 TIIRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE------- 74 (262)
T ss_pred cEEEEeeEEEEe-CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccc-------
Confidence 579999999999 5677999999999999999999999999999999999999986 49999998765210
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----------CC----CHHH
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEK 319 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----------~~----~~~~ 319 (356)
+.+ .... ...+.+++|++|++ .+++..|+.+++.... .. ....
T Consensus 75 -~~~------------------~~~~-~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (262)
T PRK09984 75 -GRL------------------ARDI-RKSRANTGYIFQQF--NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132 (262)
T ss_pred -ccc------------------chhH-HHHHhheEEEcccc--ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHH
Confidence 000 0000 01134699999986 4677889999875321 00 1234
Q ss_pred HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.++++.+|+.+..+. ++.+|||||||||+||++++
T Consensus 133 ~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~ 168 (262)
T PRK09984 133 ALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALM 168 (262)
T ss_pred HHHHHHHcCCHHHHhC-CccccCHHHHHHHHHHHHHh
Confidence 6788999999865554 67999999999999999874
No 178
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=7.8e-26 Score=212.09 Aligned_cols=132 Identities=28% Similarity=0.417 Sum_probs=106.0
Q ss_pred eeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHH
Q psy2684 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 267 (356)
Q Consensus 188 ~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~ 267 (356)
.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~y-~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-------------------- 60 (302)
T TIGR01188 2 VY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-------------------- 60 (302)
T ss_pred ee-CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--------------------
Confidence 56 456799999999999999999999999999999999999999999999998765210
Q ss_pred HHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCccccCCCCC
Q psy2684 268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRD 340 (356)
Q Consensus 268 ~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~ 340 (356)
....+.++||++|++ .+++.+|+.+++... .+.. ...+.++++.+|+.+... +++.+
T Consensus 61 -------------~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 124 (302)
T TIGR01188 61 -------------PRKVRRSIGIVPQYA--SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGT 124 (302)
T ss_pred -------------HHHHHhhcEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-Cchhh
Confidence 000134699999986 478889999987532 2332 234678899999987655 47799
Q ss_pred CChHHHHHHHHHHHcC
Q psy2684 341 LSGGQKARVALAELTL 356 (356)
Q Consensus 341 LSGGqkqRvalA~~~l 356 (356)
|||||||||+||++++
T Consensus 125 LSgG~~qrv~la~al~ 140 (302)
T TIGR01188 125 YSGGMRRRLDIAASLI 140 (302)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999974
No 179
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-25 Score=203.83 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=111.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 72 (237)
T PRK11614 4 VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---------- 72 (237)
T ss_pred cEEEEEeEEEee-CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCC----------
Confidence 579999999999 456799999999999999999999999999999999999999999999998764210
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CC----HHHHHHHHhhc-CCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LP----YEKSRRQLGMF-GLPS 331 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~----~~~~~~~L~~~-~l~~ 331 (356)
......+..++|++|++ .+++..|+.+++..... .. ...+.++++.+ ++..
T Consensus 73 ---------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 129 (237)
T PRK11614 73 ---------------------QTAKIMREAVAIVPEGR--RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE 129 (237)
T ss_pred ---------------------CHHHHHHhCEEEeccCc--ccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH
Confidence 00000124699999986 36777899988754211 11 22345667777 4654
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ++.+|||||||||+||++++
T Consensus 130 ~~~~-~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 130 RRIQ-RAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhC-chhhCCHHHHHHHHHHHHHH
Confidence 4443 67999999999999999974
No 180
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.5e-25 Score=200.98 Aligned_cols=138 Identities=31% Similarity=0.416 Sum_probs=109.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|+ +. ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~-~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 66 (232)
T PRK10771 1 MLKLTDITWLYH-HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT----------- 66 (232)
T ss_pred CeEEEEEEEEEC-Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC-----------
Confidence 478999999994 43 3499999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--C--CC---HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--N--LP---YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~--~~---~~~~~~~L~~~~l~~ 331 (356)
. .....++|++|++ .+++..|+.+++.... . .. ...+.++++.+|+..
T Consensus 67 --------------------~---~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 121 (232)
T PRK10771 67 --------------------P---PSRRPVSMLFQEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED 121 (232)
T ss_pred --------------------C---hhhccEEEEeccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH
Confidence 0 0124699999986 4777889999875321 1 11 234778899999986
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+ +++.+|||||||||+||++++
T Consensus 122 ~~~-~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 122 LLA-RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred HHh-CCcccCCHHHHHHHHHHHHHh
Confidence 555 477999999999999999874
No 181
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=2.3e-25 Score=223.32 Aligned_cols=145 Identities=23% Similarity=0.317 Sum_probs=116.3
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 9 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--------- 78 (510)
T PRK15439 9 PPLLCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL--------- 78 (510)
T ss_pred CceEEEEeEEEEe-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 3579999999999 566799999999999999999999999999999999999999999999998765210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCC---CHHHHHHHHhhcCCCCcc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~---~~~~~~~~L~~~~l~~~~ 333 (356)
......+..+||++|++ .+++..|+.+++...... ..+.+.++++.+++....
T Consensus 79 ----------------------~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 134 (510)
T PRK15439 79 ----------------------TPAKAHQLGIYLVPQEP--LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL 134 (510)
T ss_pred ----------------------CHHHHHhCCEEEEeccC--ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc
Confidence 00000123599999986 477889999987543211 134567889999998765
Q ss_pred ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+ +++.+|||||||||+||++++
T Consensus 135 ~-~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 135 D-SSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred c-CChhhCCHHHHHHHHHHHHHH
Confidence 5 477999999999999999974
No 182
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=4.6e-26 Score=205.46 Aligned_cols=131 Identities=26% Similarity=0.405 Sum_probs=108.9
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
-++|+||+|+.||++.|.|-||||||||++++.+++.|+.|+|+++|.++. .+.+.+|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~-------------~~~~~~L--------- 100 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA-------------KLSAAEL--------- 100 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchh-------------cCCHHHH---------
Confidence 578999999999999999999999999999999999999999999998864 1223332
Q ss_pred CCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCccccCCCCCCChHHHH
Q psy2684 275 PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347 (356)
Q Consensus 275 ~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqkq 347 (356)
+.-++.++++|||++ .++|..|+.++.... .+.+. +.+.++|+.+||....++ +|++|||||||
T Consensus 101 ------r~~Rr~~~sMVFQ~F--aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQ 171 (386)
T COG4175 101 ------RELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQ 171 (386)
T ss_pred ------HHHHhhhhhhhhhhh--ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHH
Confidence 223456899999997 489999999998543 34443 457789999999998876 55999999999
Q ss_pred HHHHHHHcC
Q psy2684 348 RVALAELTL 356 (356)
Q Consensus 348 RvalA~~~l 356 (356)
||.|||+|.
T Consensus 172 RVGLARAla 180 (386)
T COG4175 172 RVGLARALA 180 (386)
T ss_pred HHHHHHHHc
Confidence 999999973
No 183
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-25 Score=206.41 Aligned_cols=146 Identities=25% Similarity=0.342 Sum_probs=113.0
Q ss_pred CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.++++++|+++.|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~-------- 76 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD-------- 76 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC--------
Confidence 4579999999999533 4589999999999999999999999999999999999999999999998765210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
. ....+..++|++|++. .+++..++.+++... ..... ..+.++++.++
T Consensus 77 -----------------------~-~~~~~~~i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (269)
T PRK13648 77 -----------------------N-FEKLRKHIGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD 131 (269)
T ss_pred -----------------------C-HHHHHhheeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcC
Confidence 0 0011346999999873 245566777765332 12222 34667899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+|||||||||+||++++
T Consensus 132 l~~~~~~-~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 132 MLERADY-EPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred CchhhhC-CcccCCHHHHHHHHHHHHHH
Confidence 9876554 67999999999999999974
No 184
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=223.97 Aligned_cols=144 Identities=24% Similarity=0.320 Sum_probs=115.3
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 72 (501)
T PRK10762 3 ALLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG--------- 72 (501)
T ss_pred ceEEEeeeEEEe-CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 479999999999 5667999999999999999999999999999999999999999999999987652100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------C-CCH----HHHHHHHhh
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------N-LPY----EKSRRQLGM 326 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~-~~~----~~~~~~L~~ 326 (356)
. ....+..++|++|++ .+++..|+.+++.... . ... ..+.++++.
T Consensus 73 ---------------------~-~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (501)
T PRK10762 73 ---------------------P-KSSQEAGIGIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR 128 (501)
T ss_pred ---------------------H-HHHHhCCEEEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHH
Confidence 0 000124699999986 4778899999875321 1 111 346678999
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+..+ +++.+|||||||||+||++++
T Consensus 129 ~~l~~~~~-~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 129 LNLRFSSD-KLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred cCCCCCcc-CchhhCCHHHHHHHHHHHHHh
Confidence 99987655 478999999999999999974
No 185
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-25 Score=206.98 Aligned_cols=143 Identities=25% Similarity=0.244 Sum_probs=108.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.+++++|+++.|++++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----------- 73 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----------- 73 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH-----------
Confidence 368999999999545679999999999999999999999999999999999999999999999865410
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cCC----CHHHHHHHHhh
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FNL----PYEKSRRQLGM 326 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~~----~~~~~~~~L~~ 326 (356)
...+..++|++|++........++.+++... ... ....+.++++.
T Consensus 74 ------------------------~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (272)
T PRK15056 74 ------------------------ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR 129 (272)
T ss_pred ------------------------hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHH
Confidence 0012358999998642122223445543210 011 12345678999
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+..+ +++.+||||||||++||++++
T Consensus 130 ~gl~~~~~-~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 130 VDMVEFRH-RQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred cCChhHhc-CCcccCCHHHHHHHHHHHHHh
Confidence 99987655 477999999999999999974
No 186
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=207.97 Aligned_cols=148 Identities=28% Similarity=0.402 Sum_probs=110.8
Q ss_pred EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
++++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~------- 75 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTS------- 75 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-------
Confidence 7899999999532 36999999999999999999999999999999999999999999999987653100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
+ ... ....+..++|++|++...+++ .|+.+++... .+... ..+.++++.+|
T Consensus 76 -------------------~-~~~-~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (280)
T PRK13649 76 -------------------K-NKD-IKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVG 133 (280)
T ss_pred -------------------c-ccC-HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 0 000 001134699999986323444 5888887532 22222 23567789999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.....++++.+|||||||||+||++++
T Consensus 134 l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 134 ISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9743334578999999999999999874
No 187
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.7e-25 Score=203.37 Aligned_cols=146 Identities=27% Similarity=0.345 Sum_probs=110.7
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ 251 (356)
+|+++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|++. |++|+|.++|.++...
T Consensus 4 ~~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 78 (253)
T PRK14242 4 PPKMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP---- 78 (253)
T ss_pred CcEEEEeeeEEEE-CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc----
Confidence 4689999999999 45679999999999999999999999999999999999975 6899999998765210
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~ 323 (356)
+ .. ....+..++|++|++. +++ .|+.+++... .+. . .+.+.++
T Consensus 79 -----------------------~--~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 129 (253)
T PRK14242 79 -----------------------H--VD-VVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERS 129 (253)
T ss_pred -----------------------c--cC-HHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 0 00 0011346999999863 565 4888887532 122 1 2346678
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++... ...+++.+|||||||||+||++++
T Consensus 130 l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 130 LRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 888988531 223467999999999999999974
No 188
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=2.6e-25 Score=198.32 Aligned_cols=137 Identities=28% Similarity=0.380 Sum_probs=109.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|+ . .+.++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 65 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL------------ 65 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC------------
Confidence 46899999994 3 56899999999999999999999999999999999999999999998765200
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CC-----CHHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NL-----PYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~-----~~~~~~~~L~~~~l~~~ 332 (356)
. ..+..++|++|++. +++..|+.+++.... .. ....+.++++.+|+.+.
T Consensus 66 ------------------~----~~~~~i~~v~q~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 121 (213)
T TIGR01277 66 ------------------A----PYQRPVSMLFQENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY 121 (213)
T ss_pred ------------------C----hhccceEEEeccCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHH
Confidence 0 01346999999973 777889999875321 11 12356778999999766
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. +++.+||||||||++||++++
T Consensus 122 ~~-~~~~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 122 LD-RLPEQLSGGQRQRVALARCLV 144 (213)
T ss_pred hh-CCcccCCHHHHHHHHHHHHHh
Confidence 54 467999999999999999874
No 189
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=1.2e-25 Score=205.53 Aligned_cols=154 Identities=31% Similarity=0.421 Sum_probs=113.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... |.+|
T Consensus 1 i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-------~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP-------GRNG 72 (252)
T ss_pred CEEEEEEEEe-CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-------cccc
Confidence 4689999999 4567999999999999999999999999999999999999999999999987653110 0000
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~l~~ 331 (356)
++ .+.........+..++|++|++ .+++..|+.+++... .+.. ...+.++++.+|+.+
T Consensus 73 ~~------------~~~~~~~~~~~~~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 138 (252)
T TIGR03005 73 PL------------VPADEKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138 (252)
T ss_pred cc------------cccchhHHHHHhhCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 00 0000000001134699999986 477888999887532 1222 234677899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ++.+|||||+||++||++++
T Consensus 139 ~~~~-~~~~LS~G~~qrv~laral~ 162 (252)
T TIGR03005 139 KADH-MPAQLSGGQQQRVAIARALA 162 (252)
T ss_pred Hhhc-ChhhcCHHHHHHHHHHHHHH
Confidence 6554 67999999999999999974
No 190
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.92 E-value=3e-25 Score=199.42 Aligned_cols=148 Identities=25% Similarity=0.422 Sum_probs=111.1
Q ss_pred cEEEecceeeeCC------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee----ccccCc
Q psy2684 179 VLGLHDVTFGYPG------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV----NFGLDM 248 (356)
Q Consensus 179 ~l~~~~l~~~~~~------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~----~~~~~~ 248 (356)
+++++|+++.|++ ...+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ++...
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~- 79 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA- 79 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc-
Confidence 4789999999942 146999999999999999999999999999999999999999999999732 21100
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHH
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSR 321 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~ 321 (356)
. ........+..++|++|++ .+++..|+.+++... .+.. .+.+.
T Consensus 80 -------------------------~--~~~~~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 130 (224)
T TIGR02324 80 -------------------------S--PREVLEVRRKTIGYVSQFL--RVIPRVSALEVVAEPLLERGVPREAARARAR 130 (224)
T ss_pred -------------------------C--HHHHHHHHhcceEEEeccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0 0000000124699999987 367888998887531 2222 23567
Q ss_pred HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++++.+|+.....++++.+||||||||++||++++
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~ 165 (224)
T TIGR02324 131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFI 165 (224)
T ss_pred HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 78999999764434578999999999999999974
No 191
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=2.2e-25 Score=205.56 Aligned_cols=150 Identities=27% Similarity=0.314 Sum_probs=113.9
Q ss_pred CcEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684 178 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME 249 (356)
Q Consensus 178 ~~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~ 249 (356)
++++++|+++.|++ ++.+++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~-- 79 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL-- 79 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--
Confidence 36899999999953 46799999999999999999999999999999999999999999999998754210
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSR 321 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~ 321 (356)
.+ ......+..++|++|++...+++..++.+++... .... ...+.
T Consensus 80 ------------------------~~---~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (268)
T PRK10419 80 ------------------------NR---AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS 132 (268)
T ss_pred ------------------------Ch---hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 00 0000113469999999743466778888876321 1222 13467
Q ss_pred HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++++.+|+......+++..||||||||++||++++
T Consensus 133 ~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~ 167 (268)
T PRK10419 133 EMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA 167 (268)
T ss_pred HHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh
Confidence 88999999743333477999999999999999974
No 192
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=224.48 Aligned_cols=144 Identities=24% Similarity=0.291 Sum_probs=114.8
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 4 ~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~--------- 73 (510)
T PRK09700 4 PYISMAGIGKSF-GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD--------- 73 (510)
T ss_pred ceEEEeeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC---------
Confidence 579999999999 5667999999999999999999999999999999999999999999999987653100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------CC---C----HHHHHHH
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NL---P----YEKSRRQ 323 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~~---~----~~~~~~~ 323 (356)
.....+.+++|++|++ .+++..|+.+++.... +. . ...+.++
T Consensus 74 ----------------------~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (510)
T PRK09700 74 ----------------------HKLAAQLGIGIIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMM 129 (510)
T ss_pred ----------------------HHHHHHCCeEEEeecc--cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHH
Confidence 0000123699999986 3677889998875311 11 1 1346678
Q ss_pred HhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|+.+..+ +++.+|||||||||+||++++
T Consensus 130 l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 130 LLRVGLKVDLD-EKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred HHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence 99999986654 478999999999999999974
No 193
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=6.2e-25 Score=201.10 Aligned_cols=142 Identities=22% Similarity=0.217 Sum_probs=110.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc----CCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p----~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++|+++.| + +.+|+++||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-------- 73 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-------- 73 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--------
Confidence 58999999999 3 5799999999999999999999999999999999999999 99999999876420
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCC--CHHHHHHHHhhcCC
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNL--PYEKSRRQLGMFGL 329 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~--~~~~~~~~L~~~~l 329 (356)
....+..++|++|++...+.+..++.+++.. ..+. ..+.+.++++.+++
T Consensus 74 --------------------------~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 127 (254)
T PRK10418 74 --------------------------CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127 (254)
T ss_pred --------------------------cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCC
Confidence 0001246999999974334555677666532 1222 23457788999999
Q ss_pred CCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSY--AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~--~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ...+++.+|||||||||+||++++
T Consensus 128 ~~~~~~~~~~~~~LS~Gq~qrv~laral~ 156 (254)
T PRK10418 128 ENAARVLKLYPFEMSGGMLQRMMIALALL 156 (254)
T ss_pred CChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence 762 123477999999999999999974
No 194
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-25 Score=192.24 Aligned_cols=141 Identities=30% Similarity=0.400 Sum_probs=110.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
||+++|++++. .++.+++++||++++||+++|+||||||||||++.|+|.+.|++|++.++|.++.....+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~------- 72 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE------- 72 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH-------
Confidence 57899999999 6788999999999999999999999999999999999999999999999988764221100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c--C-CC-HH--HHHHHHhhcCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F--N-LP-YE--KSRRQLGMFGL 329 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~--~-~~-~~--~~~~~L~~~~l 329 (356)
..++-+.++|+.. +-...|+.|.+... . + .+ +. .+++.|++.++
T Consensus 73 -------------------------lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~ 125 (259)
T COG4559 73 -------------------------LARHRAVLPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL 125 (259)
T ss_pred -------------------------HHHHhhhcccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh
Confidence 0124577888864 33345777776432 1 1 11 22 26788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
.++..+ ...+|||||||||.|||+|
T Consensus 126 ~~la~R-~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 126 SGLAGR-DYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred hhhhcc-chhhcCchHHHHHHHHHHH
Confidence 998775 4589999999999999987
No 195
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.5e-25 Score=222.98 Aligned_cols=145 Identities=23% Similarity=0.367 Sum_probs=115.3
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeeccccCcCCeeee
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~------- 74 (506)
T PRK13549 3 EYLLEMKNITKTF-GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS------- 74 (506)
T ss_pred CceEEEeeeEEEe-CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC-------
Confidence 3579999999999 566799999999999999999999999999999999999996 899999998765210
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHH
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQL 324 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~-~~----~~~~~~~L 324 (356)
......+..+||++|++ .+++..|+.+++.... . .. ...+.+++
T Consensus 75 ------------------------~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 128 (506)
T PRK13549 75 ------------------------NIRDTERAGIAIIHQEL--ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLL 128 (506)
T ss_pred ------------------------CHHHHHHCCeEEEEecc--ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHH
Confidence 00000124599999986 4778889999875321 1 12 13467889
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++..... +++.+|||||||||+||++++
T Consensus 129 ~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 129 AQLKLDINPA-TPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence 9999976554 478999999999999999974
No 196
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=2e-25 Score=204.68 Aligned_cols=141 Identities=30% Similarity=0.365 Sum_probs=111.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----------- 69 (256)
T TIGR03873 2 LRLSRVSWSA-GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS----------- 69 (256)
T ss_pred ceEEeEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCC-----------
Confidence 5789999999 5568999999999999999999999999999999999999999999999987652100
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------CCC----HHHHHHHHhhcC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NLP----YEKSRRQLGMFG 328 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~~~----~~~~~~~L~~~~ 328 (356)
....+..++|++|++. ++...|+.+++.... ... ...+.++++.++
T Consensus 70 ---------------------~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 70 ---------------------RRARARRVALVEQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ---------------------HHHHhhheEEecccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcC
Confidence 0001235899999873 556789998874321 111 234677899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+....+. ++.+|||||||||+||++++
T Consensus 127 l~~~~~~-~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 127 LSHLADR-DMSTLSGGERQRVHVARALA 153 (256)
T ss_pred cHhhhcC-CcccCCHHHHHHHHHHHHHh
Confidence 9765554 67999999999999999974
No 197
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.7e-25 Score=202.61 Aligned_cols=146 Identities=24% Similarity=0.228 Sum_probs=110.1
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
+++++++|+++.| ++..+++++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 5 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 79 (254)
T PRK14273 5 EAIIETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN---- 79 (254)
T ss_pred CceEEEeeeEEEe-CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc----
Confidence 4579999999999 456799999999999999999999999999999999999997 489999998764210
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~ 323 (356)
... ....+..++|++|++. ++ ..|+.+++... .+. . .+.+.+.
T Consensus 80 -------------------------~~~-~~~~~~~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 130 (254)
T PRK14273 80 -------------------------NFD-ILELRRKIGMVFQTPN--PF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQS 130 (254)
T ss_pred -------------------------ccc-HHHHhhceEEEeeccc--cc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 000 0011346999999974 45 47999987532 121 1 2345677
Q ss_pred HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++.. ...++++.+|||||||||+||++++
T Consensus 131 l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 131 LKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred HHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 88888732 1223467999999999999999974
No 198
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.1e-25 Score=205.45 Aligned_cols=148 Identities=24% Similarity=0.273 Sum_probs=112.9
Q ss_pred CCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcC
Q psy2684 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDME 249 (356)
Q Consensus 175 ~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~ 249 (356)
.++++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 35 ~~~~~l~i~~l~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~- 112 (285)
T PRK14254 35 SGETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD- 112 (285)
T ss_pred CCCceEEEEEEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc-
Confidence 356789999999999 45679999999999999999999999999999999999997 68999999987642100
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC---HHHHHHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP---YEKSRRQ 323 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~---~~~~~~~ 323 (356)
.. ....+.+++|++|++. +++. ++.+++... .+.. ..++.++
T Consensus 113 ----------------------------~~-~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~ 160 (285)
T PRK14254 113 ----------------------------VD-PVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEES 160 (285)
T ss_pred ----------------------------cc-hHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00 0011347999999973 5554 888887532 1222 2346778
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++... ...+++.+|||||||||+||++++
T Consensus 161 l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 161 LRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred HHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999988531 223467999999999999999974
No 199
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=1.5e-24 Score=236.00 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=122.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALF---LEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDI 75 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~---~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i 75 (356)
.++++.+|||||+||++||++|+ .+|++|||||||++||+.+++.|.++|+++ +.|||+||||++++ .+||++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrV 881 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYV 881 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEE
Confidence 46789999999999999999997 699999999999999999999988888654 67999999999999 789999
Q ss_pred EEEe------CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccC
Q psy2684 76 IHLD------MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDD 149 (356)
Q Consensus 76 ~~l~------~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (356)
++|. +|+++. .|+.+++....... .. .+. ... ....
T Consensus 882 i~L~p~gg~~~G~iv~-~Gtpeel~~~~s~t-~~-------------~l~--------------~~l---------~~~~ 923 (1809)
T PRK00635 882 LELGPEGGNLGGYLLA-SCSPEELIHLHTPT-AK-------------ALR--------------PYL---------SSPQ 923 (1809)
T ss_pred EEEccCCCCCCCEEEE-eCCHHHHHhccCch-HH-------------HHH--------------HHh---------hccc
Confidence 9996 577764 56665543210000 00 000 000 0000
Q ss_pred CCCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 150 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
.... . .+. . ... +...++++.+ .....|+++||+|++|++++|+|+||||||||+..+ +
T Consensus 924 --~~~~-----------~-~~~--~-~~~-l~~~~i~i~~-~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L 982 (1809)
T PRK00635 924 --ELPY-----------L-PDP--S-PKP-PVPADITIKN-AYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--L 982 (1809)
T ss_pred --cccc-----------c-ccc--c-ccc-cccceEEEec-cccccccceeEEecCCcEEEEECCCCCChhHHHHHH--H
Confidence 0000 0 000 0 001 2344555554 333469999999999999999999999999987766 3
Q ss_pred cccCCCceeEe
Q psy2684 230 LTPNKGKVLLE 240 (356)
Q Consensus 230 ~~p~~G~i~~~ 240 (356)
+. .|.+.|.
T Consensus 983 ~~--~G~~~~~ 991 (1809)
T PRK00635 983 YA--AGNIAYA 991 (1809)
T ss_pred Hh--hccEeee
Confidence 32 6777543
No 200
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=2.4e-25 Score=195.02 Aligned_cols=134 Identities=31% Similarity=0.431 Sum_probs=102.3
Q ss_pred CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHh
Q psy2684 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270 (356)
Q Consensus 191 ~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~ 270 (356)
+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~---------------------- 60 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR---------------------- 60 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc----------------------
Confidence 4567999999999999999999999999999999999999999999999987652100
Q ss_pred CCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCccccCCCCCCCh
Q psy2684 271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSG 343 (356)
Q Consensus 271 g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSG 343 (356)
.. ....+..++|++|++...++ ..|+.+++... .+... +.+.++++.+|+....+ +++.+|||
T Consensus 61 -------~~-~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~ 130 (190)
T TIGR01166 61 -------KG-LLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSG 130 (190)
T ss_pred -------cc-hHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCH
Confidence 00 00113469999998642344 46888887532 22222 34667899999987655 46799999
Q ss_pred HHHHHHHHHHHcC
Q psy2684 344 GQKARVALAELTL 356 (356)
Q Consensus 344 GqkqRvalA~~~l 356 (356)
||||||+||++++
T Consensus 131 G~~qrv~laral~ 143 (190)
T TIGR01166 131 GEKKRVAIAGAVA 143 (190)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999974
No 201
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4.5e-25 Score=194.13 Aligned_cols=137 Identities=23% Similarity=0.287 Sum_probs=109.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~-~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~------------ 66 (195)
T PRK13541 1 MLSLHQLQFNI-EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN------------ 66 (195)
T ss_pred CeEEEEeeEEE-CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh------------
Confidence 47899999999 4555665 999999999999999999999999999999999999999999865420
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHhhcCCCCccccC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
. ....++|++|++ .++...|+.+++..... .....+.++++.+++..... +
T Consensus 67 ---------------------~---~~~~~~~~~~~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 119 (195)
T PRK13541 67 ---------------------I---AKPYCTYIGHNL--GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-E 119 (195)
T ss_pred ---------------------h---hhhhEEeccCCc--CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-c
Confidence 0 012478999875 35667899998754221 13345677889999976554 4
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++.+||||||||++||++++
T Consensus 120 ~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 120 KCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred ChhhCCHHHHHHHHHHHHHh
Confidence 67999999999999999974
No 202
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=2.4e-25 Score=205.54 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=110.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC--------CCceeEeeeccccCcCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--------KGKVLLEKVNFGLDMES 250 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~--------~G~i~~~g~~~~~~~~~ 250 (356)
+++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 1 ml~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~--- 76 (272)
T PRK13547 1 MLTADHLHVAR-RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI--- 76 (272)
T ss_pred CeEEEEEEEEE-CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC---
Confidence 47899999999 5668999999999999999999999999999999999999998 99999998764210
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-C---CHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-L---PYEK 319 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~---~~~~ 319 (356)
. ....+..++|++|++. ++...|+.+++.... . . ....
T Consensus 77 ----------------------------~-~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 125 (272)
T PRK13547 77 ----------------------------D-APRLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDGEI 125 (272)
T ss_pred ----------------------------C-HHHHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHHHH
Confidence 0 0001234799999863 334578998875321 0 1 1134
Q ss_pred HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.++++.+|+..... +++.+|||||+|||+||++++
T Consensus 126 ~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 126 AWQALALAGATALVG-RDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHh
Confidence 667899999987665 477999999999999999974
No 203
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=1.9e-25 Score=200.25 Aligned_cols=146 Identities=28% Similarity=0.341 Sum_probs=113.0
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.|+++ ..+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-------- 72 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGA-------- 72 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhc--------
Confidence 36899999999532 5699999999999999999999999999999999999999999999998765210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----CCC----HHHHHHHHhhc
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----NLP----YEKSRRQLGMF 327 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~~~----~~~~~~~L~~~ 327 (356)
.+. .....+..++|++|++ .+++..|+.+++.... ... ...+.++++.+
T Consensus 73 ------------------~~~---~~~~~~~~i~~~~q~~--~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (220)
T TIGR02982 73 ------------------SEK---ELVQLRRNIGYIFQAH--NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAV 129 (220)
T ss_pred ------------------CHh---HHHHHHhheEEEcCCh--hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc
Confidence 000 0001134699999987 3677789988775321 122 23467789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+.... ++.+||||||||++||++++
T Consensus 130 ~l~~~~~~-~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 130 GLGDHLDY-YPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred CChhhhhc-ChhhCCHHHHHHHHHHHHHh
Confidence 99765554 67999999999999999974
No 204
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.9e-25 Score=205.73 Aligned_cols=144 Identities=26% Similarity=0.346 Sum_probs=112.9
Q ss_pred cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++|+++.|++. ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~--------- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE--------- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC---------
Confidence 68999999999532 3589999999999999999999999999999999999999999999998765210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l 329 (356)
.. ...+..+||++|++. .++...|+.+++... .+... +.+..+++.+|+
T Consensus 75 ----------------------~~-~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l 130 (277)
T PRK13642 75 ----------------------NV-WNLRRKIGMVFQNPD-NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM 130 (277)
T ss_pred ----------------------CH-HHHhcceEEEEECHH-HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 00 011346999999863 245567888887532 12232 235678899999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... +++..|||||||||+||++++
T Consensus 131 ~~~~~-~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 131 LDFKT-REPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred HhHhh-CCcccCCHHHHHHHHHHHHHH
Confidence 76654 477999999999999999974
No 205
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=4.3e-25 Score=218.63 Aligned_cols=93 Identities=39% Similarity=0.614 Sum_probs=90.2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
.+++..||||||.|+.||+.++.+|.||||||||||||.++++.|++.|.+|.+|||+||||++|++++|++||++++ +
T Consensus 434 ~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~ 512 (530)
T COG0488 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-K 512 (530)
T ss_pred hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-c
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EeEecCCHHHHHHH
Q psy2684 83 LFYYKGNFTLFKKM 96 (356)
Q Consensus 83 ~~~~~g~~~~~~~~ 96 (356)
+..|.|+|++|.+.
T Consensus 513 ~~~~~g~y~~y~~~ 526 (530)
T COG0488 513 VEEFEGGYEDYLEQ 526 (530)
T ss_pred eeEcCCCHHHHHHh
Confidence 99999999999764
No 206
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.2e-25 Score=202.31 Aligned_cols=146 Identities=25% Similarity=0.331 Sum_probs=110.9
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ 251 (356)
..+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 11 ~~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~--- 86 (260)
T PRK10744 11 PSKIQVRNLNFYY-GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK--- 86 (260)
T ss_pred CceEEEEEEEEEe-CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc---
Confidence 4579999999999 45679999999999999999999999999999999999986 58999999987652100
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~~~ 323 (356)
.. ....+.+++|++|++. +++ .|+.+++... . ..+. +.+.++
T Consensus 87 --------------------------~~-~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~ 136 (260)
T PRK10744 87 --------------------------QD-IALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWA 136 (260)
T ss_pred --------------------------cc-hHHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHH
Confidence 00 0011346999999873 555 7888887532 1 2222 346678
Q ss_pred HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++.. ....+++.+|||||+|||+||++++
T Consensus 137 l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 137 LTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred HHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 89998742 1223467999999999999999974
No 207
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.9e-25 Score=201.65 Aligned_cols=146 Identities=24% Similarity=0.238 Sum_probs=111.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~----- 76 (253)
T PRK14267 3 FAIETVNLRVYY-GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP----- 76 (253)
T ss_pred ceEEEEeEEEEe-CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc-----
Confidence 468999999999 456799999999999999999999999999999999999987 499999998765200
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--CH----HHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PY----EKSRRQ 323 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~~----~~~~~~ 323 (356)
... ....+.+++|++|++ .+++..|+.+++... .+. .. ..+.++
T Consensus 77 ------------------------~~~-~~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 129 (253)
T PRK14267 77 ------------------------DVD-PIEVRREVGMVFQYP--NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA 129 (253)
T ss_pred ------------------------ccC-hHHHhhceeEEecCC--ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHH
Confidence 000 001134699999986 367788999987532 121 11 245678
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++... ...+++.+|||||||||+||++++
T Consensus 130 l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14267 130 LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA 165 (253)
T ss_pred HHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence 888887531 223467999999999999999974
No 208
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=3.5e-25 Score=215.97 Aligned_cols=151 Identities=25% Similarity=0.305 Sum_probs=119.7
Q ss_pred CcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC----CCceeEeeeccccCcCC
Q psy2684 178 PVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN----KGKVLLEKVNFGLDMES 250 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~----~G~i~~~g~~~~~~~~~ 250 (356)
++|+++|+++.|... ..+++|+||+|.+||++||+|.|||||||+.++|.|++++. +|+|.|+|.++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l--- 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL--- 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC---
Confidence 489999999999532 25899999999999999999999999999999999999988 89999999765311
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-CC----HHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LP----YEKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-~~----~~~~~~ 322 (356)
+ .......+..+|+|+||++...|+|-+|+.+.+.... . .+ ..++.+
T Consensus 81 -------~------------------~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~e 135 (539)
T COG1123 81 -------S------------------EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135 (539)
T ss_pred -------C------------------HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 0 0111122345799999999888999999987765432 1 22 245667
Q ss_pred HHhhcCCCCcccc-CCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~-~~~~~LSGGqkqRvalA~~~l 356 (356)
+|+.+|+++.... ++|++|||||||||.||++++
T Consensus 136 lL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa 170 (539)
T COG1123 136 LLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA 170 (539)
T ss_pred HHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh
Confidence 8999999876653 467999999999999999874
No 209
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.8e-25 Score=220.61 Aligned_cols=144 Identities=26% Similarity=0.390 Sum_probs=115.2
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~--------- 72 (501)
T PRK11288 3 PYLSFDGIGKTF-PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS--------- 72 (501)
T ss_pred ceEEEeeeEEEE-CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC---------
Confidence 579999999999 5567999999999999999999999999999999999999999999999987652100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHHhhc
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQLGMF 327 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~-~~----~~~~~~~L~~~ 327 (356)
.....+..+||++|++ .+++..|+.+++.... + .. ...+.++++.+
T Consensus 73 ----------------------~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (501)
T PRK11288 73 ----------------------TTAALAAGVAIIYQEL--HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL 128 (501)
T ss_pred ----------------------HHHHHhCCEEEEEech--hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHc
Confidence 0001134699999986 4778889999875421 1 11 23467789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+..... +++.+|||||||||+||++++
T Consensus 129 ~l~~~~~-~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 129 GVDIDPD-TPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred CCCCCcC-CchhhCCHHHHHHHHHHHHHH
Confidence 9986554 477999999999999999974
No 210
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.3e-25 Score=202.01 Aligned_cols=146 Identities=25% Similarity=0.287 Sum_probs=111.3
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| +++.+|+++||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 10 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~--- 85 (258)
T PRK14268 10 QPQIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD--- 85 (258)
T ss_pred ceeEEEeeeEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc---
Confidence 4679999999999 456799999999999999999999999999999999999985 7999999987652100
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQL 324 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L 324 (356)
.. ....+..++|++|++. +++ .|+.+++... .+... ..+.+++
T Consensus 86 --------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l 135 (258)
T PRK14268 86 --------------------------VD-VVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENAL 135 (258)
T ss_pred --------------------------ch-HHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00 0011346999999863 566 7998887532 22322 2356788
Q ss_pred hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++.. ....+++.+|||||+|||+||++++
T Consensus 136 ~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 136 RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred HHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9888842 1223477999999999999999974
No 211
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7e-25 Score=202.16 Aligned_cols=147 Identities=28% Similarity=0.305 Sum_probs=111.6
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~ 250 (356)
..++++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 16 ~~~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~-- 92 (267)
T PRK14235 16 TEIKMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR-- 92 (267)
T ss_pred CCceEEEEeEEEEE-CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc--
Confidence 34579999999999 456799999999999999999999999999999999999975 8999999987652100
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--C----HHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSR 321 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~----~~~~~ 321 (356)
.. ....+..++|++|++. +++ .|+.+++... .+. . ...+.
T Consensus 93 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~ 141 (267)
T PRK14235 93 ---------------------------LD-VVELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVE 141 (267)
T ss_pred ---------------------------cc-hHHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHH
Confidence 00 0011346999999873 555 4888887532 121 1 23456
Q ss_pred HHHhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++++.+++... ...+++.+|||||||||+||++++
T Consensus 142 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 179 (267)
T PRK14235 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA 179 (267)
T ss_pred HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 78999999541 223467999999999999999974
No 212
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.4e-26 Score=189.83 Aligned_cols=140 Identities=28% Similarity=0.419 Sum_probs=112.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++++.+.- ++.++|+++||++.+||+++|+||||||||||+++++.++.|++|.++|.|.++.-- +
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~--------~--- 71 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--------K--- 71 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc--------C---
Confidence 4566665554 566799999999999999999999999999999999999999999999999876310 0
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----CCCHHHHHHHHhhcCCCCccc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----NLPYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~~~~~~~~~~L~~~~l~~~~~ 334 (356)
....+.+|+|+.|.|. +|++ |+.+++...+ ..+...+...|++|++++...
T Consensus 72 ---------------------pea~Rq~VsY~~Q~pa--Lfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L 127 (223)
T COG4619 72 ---------------------PEAYRQQVSYCAQTPA--LFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL 127 (223)
T ss_pred ---------------------hHHHHHHHHHHHcCcc--cccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhh
Confidence 0112567999999984 6655 6777764322 234566788999999998777
Q ss_pred cCCCCCCChHHHHHHHHHHHc
Q psy2684 335 TIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~ 355 (356)
.+++.+|||||+||++|+|-|
T Consensus 128 ~k~it~lSGGE~QriAliR~L 148 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNL 148 (223)
T ss_pred cchhhhccchHHHHHHHHHHh
Confidence 778999999999999999965
No 213
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.3e-25 Score=201.52 Aligned_cols=145 Identities=26% Similarity=0.312 Sum_probs=110.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 4 ~l~i~~v~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~------ 76 (258)
T PRK14241 4 RIDVKDLNIYY-GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP------ 76 (258)
T ss_pred cEEEeeEEEEE-CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc------
Confidence 58999999999 456799999999999999999999999999999999999974 799999998765200
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CH----HHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PY----EKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~----~~~~~~L~ 325 (356)
.. . ....+..++|++|++ .+++..|+.+++.... .. .. +.+.++++
T Consensus 77 ---------------------~~--~-~~~~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~ 130 (258)
T PRK14241 77 ---------------------GV--D-PVAVRRTIGMVFQRP--NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLR 130 (258)
T ss_pred ---------------------cc--C-hHHHhcceEEEcccc--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 00 0 001134699999986 3677889999875321 21 11 23566788
Q ss_pred hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+.. ....+++.+|||||||||+||++++
T Consensus 131 ~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 131 GANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred HcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 888842 1233577999999999999999974
No 214
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.3e-25 Score=198.91 Aligned_cols=139 Identities=32% Similarity=0.474 Sum_probs=111.9
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
+.++|+++.| +++.+++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~-~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~------------ 67 (232)
T cd03300 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL------------ 67 (232)
T ss_pred CEEEeEEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765310
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~~ 332 (356)
. ..+..++|++|++ .+++..|+.+++.... +.. ...+..+++.+|+.+.
T Consensus 68 -------------------~---~~~~~i~~~~q~~--~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 123 (232)
T cd03300 68 -------------------P---PHKRPVNTVFQNY--ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGY 123 (232)
T ss_pred -------------------C---hhhcceEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 0 0124689999986 3667788988875321 222 2346678999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... .+..|||||+|||+||++++
T Consensus 124 ~~~-~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 124 ANR-KPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred hcC-ChhhCCHHHHHHHHHHHHHh
Confidence 654 66999999999999999974
No 215
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.4e-26 Score=191.90 Aligned_cols=142 Identities=27% Similarity=0.347 Sum_probs=116.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
|+++.+++++|+.-..+++|+||+++.|+++||+|||||||||+|++|++++.|++|+|+++|.+....+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p---------- 70 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP---------- 70 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh----------
Confidence 5789999999954334999999999999999999999999999999999999999999999998863210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~----~~~~~~L~~~~l~~ 331 (356)
...+++||.++-. ..++..+|+.|++.. .+++.. .++.++.+.|++..
T Consensus 71 -----------------------~~vrr~IGVl~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~ 125 (245)
T COG4555 71 -----------------------SFVRRKIGVLFGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE 125 (245)
T ss_pred -----------------------HHHhhhcceecCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH
Confidence 1124578888833 358899999998754 344443 34567888999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ .+..||-|+||||+|||+++
T Consensus 126 ~~~r-Rv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 126 YLDR-RVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred HHHH-HHhhhchhhHHHHHHHHHHh
Confidence 8776 57999999999999999974
No 216
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.6e-25 Score=202.55 Aligned_cols=146 Identities=27% Similarity=0.282 Sum_probs=110.0
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 11 ~~~l~i~nl~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~--- 86 (269)
T PRK14259 11 NIIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR--- 86 (269)
T ss_pred CceEEEEeEEEEE-CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 4679999999999 55679999999999999999999999999999999999987 68999999987642000
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHh
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLG 325 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~---~~~~~~~L~ 325 (356)
... ...+.+++|++|++. +++ .|+.+++.... +.. .+.+.++++
T Consensus 87 --------------------------~~~-~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~ 136 (269)
T PRK14259 87 --------------------------VDP-VEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLR 136 (269)
T ss_pred --------------------------CCH-HHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHH
Confidence 000 001246999999873 565 48988875321 111 234566788
Q ss_pred hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.. ....+++.+|||||||||+||++++
T Consensus 137 ~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 137 KAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred HhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 887632 1223467999999999999999974
No 217
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.92 E-value=4.6e-25 Score=225.12 Aligned_cols=143 Identities=29% Similarity=0.410 Sum_probs=110.9
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|++|+|... ..+|+|+||+|++||++||+|+||||||||+|+|.|+++|++|+|.+||.|+..
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~----------- 539 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND----------- 539 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh-----------
Confidence 48999999999654 359999999999999999999999999999999999999999999999998741
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccccC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
..+. ..|+.||||+|++ ++-+-|+.|++... ...+.+++.+.+...|...+....
T Consensus 540 --i~~~-------------------~lR~~ig~V~Q~~---~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l 595 (709)
T COG2274 540 --IDLA-------------------SLRRQVGYVLQDP---FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENL 595 (709)
T ss_pred --cCHH-------------------HHHhheeEEcccc---hhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 1111 1256899999997 33466899988654 345556666665555543322211
Q ss_pred ----------CCCCCChHHHHHHHHHHHcC
Q psy2684 337 ----------PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ----------~~~~LSGGqkqRvalA~~~l 356 (356)
.-..||||||||++|||+++
T Consensus 596 P~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 596 PMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 23579999999999999975
No 218
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=3.4e-25 Score=198.62 Aligned_cols=142 Identities=25% Similarity=0.324 Sum_probs=107.6
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|+++ +.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 71 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI----------- 71 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC-----------
Confidence 6899999999543 4799999999999999999999999999999999999999999999998764210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc----
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH---- 334 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~---- 334 (356)
. ....+..++|++|++. +++ .|+.+++.........++.+.++.+++.+...
T Consensus 72 --------------------~-~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 127 (221)
T cd03244 72 --------------------G-LHDLRSRISIIPQDPV--LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPG 127 (221)
T ss_pred --------------------C-HHHHhhhEEEECCCCc--ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhccc
Confidence 0 0011346999999974 554 58888874322234445566666666543221
Q ss_pred ------cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 ------TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ------~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++..|||||+|||+||++++
T Consensus 128 ~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 128 GLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred ccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 2367899999999999999974
No 219
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-25 Score=186.54 Aligned_cols=141 Identities=28% Similarity=0.382 Sum_probs=113.3
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++.+|++... ++..+|.++||++.+||.+-|.||||||||||+|+|+|+..|++|+|+++|..+.....
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~--------- 71 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE--------- 71 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh---------
Confidence 46788999888 67789999999999999999999999999999999999999999999999766532111
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CCHHHHHHHHhhcCCCCccc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~~~~~~~~L~~~~l~~~~~ 334 (356)
| ....+-|+--.+ .+-+++|+.|++... .+ .+...+++.++.+|+....+
T Consensus 72 ----~--------------------~~~~l~yLGH~~--giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d 125 (209)
T COG4133 72 ----S--------------------YHQALLYLGHQP--GIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED 125 (209)
T ss_pred ----h--------------------HHHHHHHhhccc--cccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc
Confidence 0 112233444333 367788999998643 23 35677899999999998877
Q ss_pred cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~l 356 (356)
- |+++||-|||+||||||+.+
T Consensus 126 l-p~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 126 L-PVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred c-chhhcchhHHHHHHHHHHHc
Confidence 5 99999999999999999864
No 220
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=201.30 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=110.1
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~ 250 (356)
++++++++|+++.| ++..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 18 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~-- 94 (268)
T PRK14248 18 KEHILEVKDLSIYY-GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN-- 94 (268)
T ss_pred CCceEEEEEEEEEe-CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc--
Confidence 35689999999999 45679999999999999999999999999999999999865 79999999987652100
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~ 322 (356)
.. ....+.+++|++|++. +++. |+.+++... ... . ...+.+
T Consensus 95 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~ 143 (268)
T PRK14248 95 ---------------------------IN-VVNLRREIGMVFQKPN--PFPK-SIYNNITHALKYAGERRKSVLDEIVEE 143 (268)
T ss_pred ---------------------------cc-HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 00 0011346999999863 5554 888887532 111 1 123566
Q ss_pred HHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+++.. ....+++.+||||||||++||++++
T Consensus 144 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~ 180 (268)
T PRK14248 144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA 180 (268)
T ss_pred HHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 788888742 1223477999999999999999974
No 221
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=5.3e-25 Score=210.91 Aligned_cols=142 Identities=25% Similarity=0.309 Sum_probs=109.8
Q ss_pred ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec----cccCcCCeeeeecCC
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN----FGLDMESRVALVGPN 258 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~----~~~~~~~~ialvG~n 258 (356)
.++.+.| +...+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.+ +...
T Consensus 28 ~~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~----------- 95 (382)
T TIGR03415 28 EEILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC----------- 95 (382)
T ss_pred HHHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC-----------
Confidence 4556677 66779999999999999999999999999999999999999999999999752 2100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~ 331 (356)
....+...++.+++|+||++ .+++..|+.+++.... +.+. ..+.++++.+|+.+
T Consensus 96 -----------------~~~~l~~~r~~~i~~vfQ~~--~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 96 -----------------DAATLRRLRTHRVSMVFQKF--ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred -----------------CHHHHHHHhcCCEEEEECCC--cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 00001111124699999987 4788899999986432 3322 34678899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+. ++.+|||||||||+|||+++
T Consensus 157 ~~~~-~~~~LSgGq~QRV~LARALa 180 (382)
T TIGR03415 157 WADK-KPGELSGGMQQRVGLARAFA 180 (382)
T ss_pred hhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 6654 67999999999999999974
No 222
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.1e-25 Score=200.74 Aligned_cols=142 Identities=23% Similarity=0.257 Sum_probs=109.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~-------- 72 (246)
T PRK14269 2 IAKTTNLNLFY-GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ-------- 72 (246)
T ss_pred ceeeeeeEEEE-CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC--------
Confidence 47899999999 45679999999999999999999999999999999999984 7999999998775310
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHhh
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGM 326 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~----~~~~~~~L~~ 326 (356)
. ....+..++|++|++. +++ .|+.+++... .+. . ...+.++++.
T Consensus 73 ----------------------~--~~~~~~~i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (246)
T PRK14269 73 ----------------------D--VVALRKNVGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQK 125 (246)
T ss_pred ----------------------C--HHHHhhhEEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHH
Confidence 0 0011346999999873 555 5898887432 111 1 1235678999
Q ss_pred cCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++... ...+++.+|||||||||+||++++
T Consensus 126 ~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred cCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999531 223467899999999999999974
No 223
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8e-25 Score=204.07 Aligned_cols=150 Identities=25% Similarity=0.309 Sum_probs=110.1
Q ss_pred cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
.++++|+++.|++. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----- 80 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK----- 80 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc-----
Confidence 48999999999532 249999999999999999999999999999999999999999999999876521000
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~ 327 (356)
+ . .. ....+..++|++|++...+++ .|+.+++... .+... ..+.++++.+
T Consensus 81 -------~------------~--~~-~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~ 137 (289)
T PRK13645 81 -------K------------I--KE-VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLV 137 (289)
T ss_pred -------c------------c--cc-HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 0 0 00 001134699999986433443 5888877432 12222 2356788999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.....+++.+|||||||||+||++++
T Consensus 138 ~L~~~~~~~~~~~LS~Gq~qrv~laral~ 166 (289)
T PRK13645 138 QLPEDYVKRSPFELSGGQKRRVALAGIIA 166 (289)
T ss_pred CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99532334577999999999999999974
No 224
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.5e-25 Score=198.68 Aligned_cols=138 Identities=24% Similarity=0.370 Sum_probs=110.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|+ +. +++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~------------ 66 (235)
T cd03299 1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL------------ 66 (235)
T ss_pred CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC------------
Confidence 46889999994 43 89999999999999999999999999999999999999999999998765310
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~~ 332 (356)
. ..+..++|++|++ .+++..|+.+++.... +.. .+.+.++++.+|+...
T Consensus 67 -------------------~---~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 122 (235)
T cd03299 67 -------------------P---PEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL 122 (235)
T ss_pred -------------------C---hhHcCEEEEeecC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH
Confidence 0 0124699999986 4777889988875321 222 2345678999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ++.+|||||+|||+||++++
T Consensus 123 ~~~-~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 123 LNR-KPETLSGGEQQRVAIARALV 145 (235)
T ss_pred Hhc-CcccCCHHHHHHHHHHHHHH
Confidence 654 67999999999999999974
No 225
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=8.3e-25 Score=209.25 Aligned_cols=139 Identities=26% Similarity=0.341 Sum_probs=107.8
Q ss_pred cceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchh
Q psy2684 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKS 263 (356)
Q Consensus 184 ~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKs 263 (356)
|+++.| ++.. + ++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 4 ~l~~~~-~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~--------------- 65 (354)
T TIGR02142 4 RFSKRL-GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR--------------- 65 (354)
T ss_pred EEEEEE-CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCc---------------
Confidence 789999 4444 4 899999999999999999999999999999999999999999987653100
Q ss_pred hHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCC----HHHHHHHHhhcCCCCccccCCC
Q psy2684 264 TFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLP----YEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 264 Tll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~----~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
........+.+++|++|++ .+++.+|+.+++.... ... ...+.++++.+|+.+..+. ++
T Consensus 66 -------------~~~~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~ 129 (354)
T TIGR02142 66 -------------KGIFLPPEKRRIGYVFQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-LP 129 (354)
T ss_pred -------------cccccchhhCCeEEEecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-Ch
Confidence 0000001134699999986 4788899999875421 111 2346788999999876654 67
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
.+|||||||||+||++++
T Consensus 130 ~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 130 GRLSGGEKQRVAIGRALL 147 (354)
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 999999999999999974
No 226
>KOG0058|consensus
Probab=99.91 E-value=2.8e-25 Score=219.99 Aligned_cols=143 Identities=34% Similarity=0.451 Sum_probs=108.8
Q ss_pred CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
-.++++||+|.||.. .++|+|+||+|++||++|||||||+||||+.++|..+|.|++|+|.+||+++..-
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-------- 535 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI-------- 535 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc--------
Confidence 358999999999743 4699999999999999999999999999999999999999999999999987410
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC------
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG------ 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~------ 328 (356)
. ....+.+||+|.|+|- +| .-|+.||+.... +.+.+++....++-+
T Consensus 536 ------------------~------~~~lr~~Ig~V~QEPv--LF-s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~ 588 (716)
T KOG0058|consen 536 ------------------N------HKYLRRKIGLVGQEPV--LF-SGSIRENIAYGLDNATDEEIEAAAKMANAHEFIT 588 (716)
T ss_pred ------------------C------HHHHHHHeeeeeccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH
Confidence 0 1112468999999983 44 568999986533 345555554433222
Q ss_pred -CCC----ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 -LPS----YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 -l~~----~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++ .-.. +-.+||||||||+||||+|+
T Consensus 589 ~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 589 NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred hCccccccccCC-ccccccchHHHHHHHHHHHh
Confidence 221 1122 23589999999999999985
No 227
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=1.4e-24 Score=194.22 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=106.6
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~ 260 (356)
.+.|+.+.|+++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~------------- 68 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEP------------- 68 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccc-------------
Confidence 5788999996566799999999999999999999999999999999999999999999988654210
Q ss_pred chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcc-------
Q psy2684 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA------- 333 (356)
Q Consensus 261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~------- 333 (356)
.+ .......+..++|++|++. ++ ..|+.+++...........++.++.+++.+..
T Consensus 69 -------------~~--~~~~~~~~~~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (218)
T cd03290 69 -------------SF--EATRSRNRYSVAYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGD 130 (218)
T ss_pred -------------cc--cccchhhcceEEEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCcc
Confidence 00 0000112346999999873 45 56888887543223333445566666653211
Q ss_pred ---ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 ---HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ---~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...++..|||||||||+||++++
T Consensus 131 ~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 131 QTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred ccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 12357899999999999999974
No 228
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=196.71 Aligned_cols=97 Identities=27% Similarity=0.402 Sum_probs=85.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+|||||+.+|+|||.||||++|||.+.+.+.++| ++++.||++|||.++.+.++||||++
T Consensus 135 ~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 135 ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred hccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheE
Confidence 57899999999999999999999999999999999999999876655544 45789999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFKKMYV 98 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~~~~~ 98 (356)
|++|++++.+.-++.|..++.
T Consensus 215 m~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 215 LDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred eeCCEEEEeccHHHhhcCcch
Confidence 999999997766677765433
No 229
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=9.5e-25 Score=218.57 Aligned_cols=144 Identities=24% Similarity=0.368 Sum_probs=113.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 1 ~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~--------- 70 (500)
T TIGR02633 1 LLEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKAS--------- 70 (500)
T ss_pred CEEEEeEEEEe-CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC---------
Confidence 47899999999 566799999999999999999999999999999999999987 799999998765210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-------CC----HHHHHHHHh
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-------LP----YEKSRRQLG 325 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-------~~----~~~~~~~L~ 325 (356)
......+.++||++|++ .+++..|+.+++..... .. ...+.++++
T Consensus 71 ----------------------~~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (500)
T TIGR02633 71 ----------------------NIRDTERAGIVIIHQEL--TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLR 126 (500)
T ss_pred ----------------------CHHHHHhCCEEEEeecc--ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHH
Confidence 00000124699999986 36788899998753211 11 134667899
Q ss_pred hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.....++++.+|||||||||+||++++
T Consensus 127 ~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 127 ELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred HcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 9999865444578999999999999999974
No 230
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.91 E-value=6e-25 Score=196.89 Aligned_cols=142 Identities=32% Similarity=0.444 Sum_probs=108.2
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++. ..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 71 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL----------- 71 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC-----------
Confidence 6899999999532 5699999999999999999999999999999999999999999999988654200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccC-
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTI- 336 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~- 336 (356)
.+ ...+..++|++|++. +++ .|+.+++.... ......+.++++.+++.+.....
T Consensus 72 ---------------~~------~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 127 (220)
T cd03245 72 ---------------DP------ADLRRNIGYVPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP 127 (220)
T ss_pred ---------------CH------HHHHhhEEEeCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 00 001236899999873 454 58888875322 12344566778888886544332
Q ss_pred ---------CCCCCChHHHHHHHHHHHcC
Q psy2684 337 ---------PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ---------~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||||||+||++++
T Consensus 128 ~~~~~~~~~~~~~LSgG~~qrl~la~al~ 156 (220)
T cd03245 128 NGLDLQIGERGRGLSGGQRQAVALARALL 156 (220)
T ss_pred ccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 24699999999999999974
No 231
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=199.52 Aligned_cols=147 Identities=23% Similarity=0.278 Sum_probs=111.0
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~ 250 (356)
..++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 17 ~~~~l~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~-- 93 (267)
T PRK14237 17 EEIALSTKDLHVYY-GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE-- 93 (267)
T ss_pred CCeEEEEeeEEEEE-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc--
Confidence 34579999999999 56789999999999999999999999999999999999997 58999999987652100
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CH----HHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PY----EKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~----~~~~~ 322 (356)
.. ....+..++|++|++. +++ .|+.+++.... +. .. ..+.+
T Consensus 94 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~ 142 (267)
T PRK14237 94 ---------------------------IN-VYEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVET 142 (267)
T ss_pred ---------------------------CC-hHHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHH
Confidence 00 0011346999999863 555 58999875421 21 11 33556
Q ss_pred HHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+++.. ....+++.+|||||+||++||++++
T Consensus 143 ~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 143 SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred HHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 788888852 1223577999999999999999974
No 232
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=197.83 Aligned_cols=145 Identities=24% Similarity=0.302 Sum_probs=110.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc--c---CCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~--p---~~G~i~~~g~~~~~~~~~~ia 253 (356)
.++++|+++.| ++..+|+|+||+|.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++....
T Consensus 4 ~l~~~nl~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~----- 77 (252)
T PRK14256 4 KVKLEQLNVHF-GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG----- 77 (252)
T ss_pred EEEEEEEEEEe-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc-----
Confidence 58999999999 45679999999999999999999999999999999999986 4 6899999987652100
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CC----HHHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LP----YEKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~----~~~~~~~L~ 325 (356)
... ...+..++|++|++ .+++..|+.+++... .+ .. ...+.++++
T Consensus 78 ------------------------~~~-~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 130 (252)
T PRK14256 78 ------------------------VDP-VSIRRRVGMVFQKP--NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLK 130 (252)
T ss_pred ------------------------CCh-HHhhccEEEEecCC--CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHH
Confidence 000 01234699999986 377788999887532 12 11 134567788
Q ss_pred hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++... ....++.+|||||||||+||++++
T Consensus 131 ~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 131 RVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred HcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 8998531 223467999999999999999974
No 233
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.7e-25 Score=195.60 Aligned_cols=88 Identities=32% Similarity=0.483 Sum_probs=81.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
+++++.+|||||||||+||.+|+++|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||++++
T Consensus 132 ~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v 211 (235)
T COG1122 132 LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211 (235)
T ss_pred ccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence 58999999999999999999999999999999999999999999998888876 46999999999999999999999
Q ss_pred EeCCeEeEecCCH
Q psy2684 78 LDMKKLFYYKGNF 90 (356)
Q Consensus 78 l~~g~~~~~~g~~ 90 (356)
|++|+++. .|..
T Consensus 212 l~~G~i~~-~g~p 223 (235)
T COG1122 212 LDDGKILA-DGDP 223 (235)
T ss_pred EECCEEee-cCCH
Confidence 99999975 4554
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.8e-25 Score=223.64 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=116.9
Q ss_pred CCcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeee
Q psy2684 177 PPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++++|+++.|+. +.++++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~-------- 81 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLR-------- 81 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEec--------
Confidence 458999999999942 246999999999999999999999999999999999999999999999887542
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~ 325 (356)
+.|+..+ ..............+.+|||++|++...+++.+|+.+++... .+.+. +++.++|+
T Consensus 82 -----~~~~~~~-----~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 151 (623)
T PRK10261 82 -----RRSRQVI-----ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151 (623)
T ss_pred -----ccccccc-----ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0111000 000000000000112369999999744577889999987542 12322 34667899
Q ss_pred hcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSY--AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+... ..++++.+|||||||||+||++++
T Consensus 152 ~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~ 184 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184 (623)
T ss_pred HCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 9999641 234577999999999999999974
No 235
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=1.3e-24 Score=196.91 Aligned_cols=139 Identities=29% Similarity=0.389 Sum_probs=111.8
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~i~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~------------ 67 (237)
T TIGR00968 1 IEIANISKRF-GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV------------ 67 (237)
T ss_pred CEEEEEEEEE-CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC------------
Confidence 4689999999 456799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~~ 332 (356)
. ..+..++|++|++ .+++..|+.+++.... +.. ...+.++++.+++...
T Consensus 68 -------------------~---~~~~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 123 (237)
T TIGR00968 68 -------------------H---ARDRKIGFVFQHY--ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL 123 (237)
T ss_pred -------------------C---hhhcCEEEEecCh--hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH
Confidence 0 0134699999986 4777889998875321 221 2346778999999765
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. +++..|||||+||++||++++
T Consensus 124 ~~-~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 124 GD-RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred hh-CChhhCCHHHHHHHHHHHHHh
Confidence 54 467999999999999999974
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=1.4e-24 Score=195.41 Aligned_cols=140 Identities=22% Similarity=0.290 Sum_probs=110.9
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~i 252 (356)
++.++|+++.|++. +.+++++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~------ 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP------ 76 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh------
Confidence 46789999999654 579999999999999999999999999999999999999 999999998865420
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC---CCH----HHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN---LPY----EKSRR 322 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~---~~~----~~~~~ 322 (356)
...+..++|++|++ .+++..|+.+++... .. ... ..+..
T Consensus 77 -----------------------------~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
T cd03234 77 -----------------------------DQFQKCVAYVRQDD--ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED 125 (226)
T ss_pred -----------------------------HHhcccEEEeCCCC--ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence 01235699999986 467788999987532 11 111 12334
Q ss_pred -HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 -QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 -~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.++.+++...... ++..|||||+|||+||++++
T Consensus 126 ~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 126 VLLRDLALTRIGGN-LVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred HHHHhhcchhhhcc-cccCcCHHHHHHHHHHHHHH
Confidence 7888898765544 67999999999999999974
No 237
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=198.22 Aligned_cols=146 Identities=25% Similarity=0.270 Sum_probs=110.7
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
+++++++|+++.| +++.+++++||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 2 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~--- 77 (251)
T PRK14270 2 KIKMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD--- 77 (251)
T ss_pred ccEEEEEEeEEEE-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc---
Confidence 4679999999999 456799999999999999999999999999999999999875 7999999987652100
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~ 323 (356)
+ . ....+..++|++|++. +++ .|+.+++... .+. . ...+.++
T Consensus 78 -----------------------~---~-~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 127 (251)
T PRK14270 78 -----------------------V---D-VVELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWA 127 (251)
T ss_pred -----------------------c---c-HHHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHH
Confidence 0 0 0011346999999973 555 7998887532 222 1 1335678
Q ss_pred HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++.. ....+++.+|||||||||+||++++
T Consensus 128 l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 128 LKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred HHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 88888742 1223467999999999999999874
No 238
>KOG0057|consensus
Probab=99.91 E-value=8.4e-25 Score=209.98 Aligned_cols=142 Identities=32% Similarity=0.365 Sum_probs=113.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++||++.|++++++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|+++|+++..-
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~----------- 418 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEV----------- 418 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhh-----------
Confidence 48999999999666669999999999999999999999999999999999999 999999999987411
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccccC-
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI- 336 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~- 336 (356)
. ....|.-|||+||+. .+| +.|+..++... ...+.+++.+..+++|+.+...+.
T Consensus 419 -----------------~----~~SlR~~Ig~VPQd~--~LF-ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~ 474 (591)
T KOG0057|consen 419 -----------------S----LESLRQSIGVVPQDS--VLF-NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLP 474 (591)
T ss_pred -----------------C----hHHhhhheeEeCCcc--ccc-chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcc
Confidence 0 011245699999996 355 55788887654 345677888888888875432211
Q ss_pred ---------CCCCCChHHHHHHHHHHHcC
Q psy2684 337 ---------PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ---------~~~~LSGGqkqRvalA~~~l 356 (356)
.-..|||||||||+|||++|
T Consensus 475 ~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 475 DGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred ccchhhHhhcccccccchHHHHHHHHHHh
Confidence 22479999999999999975
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.4e-25 Score=197.91 Aligned_cols=141 Identities=30% Similarity=0.396 Sum_probs=104.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|++...+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 70 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI------------ 70 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHc------------
Confidence 68999999995345699999999999999999999999999999999999999999999998654210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHhhcC----------
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFG---------- 328 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~~~~~~~L~~~~---------- 328 (356)
+ ....+..++|++|++ .+++. |+.+++..... .....+.+.++.++
T Consensus 71 ---------------~-----~~~~~~~i~~~~q~~--~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (229)
T cd03254 71 ---------------S-----RKSLRSMIGVVLQDT--FLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPN 127 (229)
T ss_pred ---------------C-----HHHHhhhEEEecCCc--hhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 0 000134689999986 35554 88888754321 22333444444443
Q ss_pred -CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 -LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 -l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..... +++.+|||||||||+||++++
T Consensus 128 ~~~~~~~-~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 128 GYDTVLG-ENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred cccCHhh-cCCCcCCHHHHHHHHHHHHHh
Confidence 333333 356899999999999999974
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=8.8e-25 Score=220.13 Aligned_cols=152 Identities=21% Similarity=0.239 Sum_probs=113.9
Q ss_pred CCcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCc
Q psy2684 177 PPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDM 248 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~ 248 (356)
+++++++|+++.|++ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 357999999999953 24799999999999999999999999999999999999987 7999999987653100
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHH
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKS 320 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~ 320 (356)
........+.++||++|++...+++..++.+++... .+.+ ..++
T Consensus 83 ----------------------------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (529)
T PRK15134 83 ----------------------------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEI 134 (529)
T ss_pred ----------------------------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 000000112469999999743466667887766421 1222 2346
Q ss_pred HHHHhhcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 321 RRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 321 ~~~L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.++++.+|+.+. ..++++.+|||||||||+||++++
T Consensus 135 ~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~ 172 (529)
T PRK15134 135 LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172 (529)
T ss_pred HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh
Confidence 778999999753 123477999999999999999974
No 241
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=1.1e-24 Score=196.09 Aligned_cols=145 Identities=30% Similarity=0.436 Sum_probs=109.8
Q ss_pred CCCcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeee
Q psy2684 176 PPPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ia 253 (356)
..++++++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------ 81 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY------ 81 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc------
Confidence 35689999999999532 3699999999999999999999999999999999999999999999998654210
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCHH---------HHHHH
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPYE---------KSRRQ 323 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~~---------~~~~~ 323 (356)
. ....+..++|++|++. +++ .|+.+++..... .... .+.++
T Consensus 82 -------------------------~-~~~~~~~i~~~~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~ 132 (226)
T cd03248 82 -------------------------E-HKYLHSKVSLVGQEPV--LFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSF 132 (226)
T ss_pred -------------------------C-HHHHHhhEEEEecccH--HHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHH
Confidence 0 0011346999999863 454 588888753211 1111 13456
Q ss_pred Hhhc--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMF--GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+ |+...... ++.+|||||||||+||++++
T Consensus 133 l~~l~~gl~~~~~~-~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 133 ISELASGYDTEVGE-KGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HHhccccccchhhc-CCCcCCHHHHHHHHHHHHHh
Confidence 7777 77765544 57999999999999999974
No 242
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.3e-24 Score=193.87 Aligned_cols=138 Identities=28% Similarity=0.321 Sum_probs=105.5
Q ss_pred cceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchh
Q psy2684 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKS 263 (356)
Q Consensus 184 ~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKs 263 (356)
+|+++| ++..+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 5 ~l~~~~-~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------------- 65 (214)
T cd03297 5 DIEKRL-PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR--------------- 65 (214)
T ss_pred eeeEec-CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc---------------
Confidence 899999 44444 99999999 999999999999999999999999999999999987642100
Q ss_pred hHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-C----CHHHHHHHHhhcCCCCccccCCC
Q psy2684 264 TFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-L----PYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 264 Tll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~----~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
.. ... ...+..++|++|++ .+++..|+.+++..... . ....+.++++.+|+..... +++
T Consensus 66 -----------~~-~~~-~~~~~~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 129 (214)
T cd03297 66 -----------KK-INL-PPQQRKIGLVFQQY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-RYP 129 (214)
T ss_pred -----------ch-hhh-hhHhhcEEEEecCC--ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-cCc
Confidence 00 000 01134699999986 46778899988753221 1 1234678899999986554 477
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
.+||||||||++||++++
T Consensus 130 ~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 130 AQLSGGEKQRVALARALA 147 (214)
T ss_pred ccCCHHHHHHHHHHHHHh
Confidence 999999999999999974
No 243
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.9e-24 Score=191.20 Aligned_cols=126 Identities=21% Similarity=0.239 Sum_probs=100.5
Q ss_pred cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCee
Q psy2684 179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~i 252 (356)
.+.++|++|.|+. ++.+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~------ 76 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE------ 76 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECcc------
Confidence 5789999999963 4579999999999999999999999999999999999999 899999999876421
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~ 332 (356)
.....+..++|++|++ .+++..|+.+++..... + .
T Consensus 77 ---------------------------~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~---------~---~---- 111 (202)
T cd03233 77 ---------------------------FAEKYPGEIIYVSEED--VHFPTLTVRETLDFALR---------C---K---- 111 (202)
T ss_pred ---------------------------chhhhcceEEEEeccc--ccCCCCcHHHHHhhhhh---------h---c----
Confidence 0001234699999985 46778899998743211 0 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ++++..|||||+||++||++++
T Consensus 112 ~-~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 112 G-NEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred c-ccchhhCCHHHHHHHHHHHHHh
Confidence 2 2467899999999999999974
No 244
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.91 E-value=8.3e-25 Score=226.82 Aligned_cols=143 Identities=29% Similarity=0.416 Sum_probs=113.7
Q ss_pred cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++..-
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~---------- 520 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL---------- 520 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC----------
Confidence 4899999999953 45799999999999999999999999999999999999999999999999887411
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC-
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI- 336 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~- 336 (356)
. ....+..+||++|++. +| +.|+.||+......+.++++++++..++.+.....
T Consensus 521 ----------------~------~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 575 (686)
T TIGR03797 521 ----------------D------VQAVRRQLGVVLQNGR--LM-SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP 575 (686)
T ss_pred ----------------C------HHHHHhccEEEccCCc--cC-cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 0 0012457999999973 55 45899998654336677788888887775432211
Q ss_pred ---------CCCCCChHHHHHHHHHHHcC
Q psy2684 337 ---------PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ---------~~~~LSGGqkqRvalA~~~l 356 (356)
.-..||||||||++|||+++
T Consensus 576 ~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 576 MGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 12579999999999999975
No 245
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=8.2e-25 Score=223.34 Aligned_cols=143 Identities=25% Similarity=0.322 Sum_probs=113.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++|+++.|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~---------- 409 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS---------- 409 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC----------
Confidence 4899999999965567999999999999999999999999999999999999999999999998764100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc---
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT--- 335 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~--- 335 (356)
....+.+|+|++|++. +|+. |+.+|+......+.+++.++++.+|+.+....
T Consensus 410 ----------------------~~~l~~~i~~v~Q~~~--lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 410 ----------------------HSVLRQGVAMVQQDPV--VLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred ----------------------HHHHHhheEEEccCCc--cccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccc
Confidence 0112457999999983 6654 89999866545567778888887775432111
Q ss_pred -------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 -------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 -------~~~~~LSGGqkqRvalA~~~l 356 (356)
..-..||||||||++|||+++
T Consensus 465 Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 465 GLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 122579999999999999975
No 246
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=196.76 Aligned_cols=146 Identities=25% Similarity=0.309 Sum_probs=109.0
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--cc---CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TP---NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p---~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+. .| ++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~---- 77 (252)
T PRK14239 3 EPILQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP---- 77 (252)
T ss_pred CceEEEEeeEEEE-CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc----
Confidence 3578999999999 4567999999999999999999999999999999999995 46 599999998765210
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~ 323 (356)
... ....+..++|++|++. +++ .|+.+++... .+.. ...+.++
T Consensus 78 -------------------------~~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 128 (252)
T PRK14239 78 -------------------------RTD-TVDLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKS 128 (252)
T ss_pred -------------------------ccc-hHhhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 000 0011346999999873 555 7898887532 2221 1335567
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++... ...+++.+|||||||||+||++++
T Consensus 129 l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 129 LKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred HHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 888887431 223467999999999999999874
No 247
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.1e-24 Score=198.12 Aligned_cols=147 Identities=23% Similarity=0.290 Sum_probs=110.2
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc--c---CCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~--p---~~G~i~~~g~~~~~~~~~ 250 (356)
.+++++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.++|.++....
T Consensus 9 ~~~~l~i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~-- 85 (259)
T PRK14274 9 KQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK-- 85 (259)
T ss_pred CCceEEEeeEEEEE-CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc--
Confidence 45689999999999 45679999999999999999999999999999999999997 3 5899999987652100
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~ 322 (356)
.. ....+..+||++|++. +++. |+.+++... .+. .. ..+.+
T Consensus 86 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~ 134 (259)
T PRK14274 86 ---------------------------VD-LVELRKNIGMVFQKGN--PFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEK 134 (259)
T ss_pred ---------------------------cC-HHHHhhceEEEecCCc--cccc-CHHHHHHhHHHhcCCCCHHHHHHHHHH
Confidence 00 0011346999999863 5554 888887432 121 21 23556
Q ss_pred HHhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+++... ...+++.+||||||||++||++++
T Consensus 135 ~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 135 SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred HHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 7888888531 223477999999999999999874
No 248
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=7.6e-25 Score=223.45 Aligned_cols=141 Identities=28% Similarity=0.325 Sum_probs=110.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|+++..-.
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~---------- 417 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD---------- 417 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCC----------
Confidence 4899999986655677999999999999999999999999999999999999 99999999998764100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCC------
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPS------ 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~------ 331 (356)
....+.+|+|++|++. +| +.|+.||+... .+.+++++++.++..++.+
T Consensus 418 ----------------------~~~lr~~i~~v~Q~~~--LF-~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp 472 (588)
T PRK11174 418 ----------------------PESWRKHLSWVGQNPQ--LP-HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLP 472 (588)
T ss_pred ----------------------HHHHHhheEEecCCCc--CC-CcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcc
Confidence 0112457999999973 55 45999998654 3466777777766655432
Q ss_pred -----ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 -----YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 -----~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... .-..||||||||++|||+++
T Consensus 473 ~G~dT~vge-~G~~LSGGQrQRialARAll 501 (588)
T PRK11174 473 QGLDTPIGD-QAAGLSVGQAQRLALARALL 501 (588)
T ss_pred ccccccccc-CCCCCCHHHHHHHHHHHHHh
Confidence 2222 23579999999999999975
No 249
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=3.5e-24 Score=195.89 Aligned_cols=145 Identities=22% Similarity=0.378 Sum_probs=109.4
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeee
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++++|+++.| ++..+|+++||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...
T Consensus 5 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~------- 76 (252)
T CHL00131 5 KPILEIKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDL------- 76 (252)
T ss_pred CceEEEEeEEEEe-CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccC-------
Confidence 3579999999999 456799999999999999999999999999999999998 689999999998765310
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C---CC----HHHH
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N---LP----YEKS 320 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~---~~----~~~~ 320 (356)
.+ ....+..++|++|++ .+++..++.+++.... . .. ...+
T Consensus 77 -------------------~~-----~~~~~~~~~~~~q~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T CHL00131 77 -------------------EP-----EERAHLGIFLAFQYP--IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEII 130 (252)
T ss_pred -------------------Ch-----hhhheeeEEEEeccc--cccccccHHHHHHHhhhhhhcccccccccHHHHHHHH
Confidence 00 000112478999986 3677778877754221 0 01 1335
Q ss_pred HHHHhhcCCCC-ccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684 321 RRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTL 356 (356)
Q Consensus 321 ~~~L~~~~l~~-~~~~~~~~-~LSGGqkqRvalA~~~l 356 (356)
.++|+.+++.+ .... ++. .|||||+|||+||++++
T Consensus 131 ~~~l~~~~l~~~~~~~-~~~~~LSgG~~qrv~la~al~ 167 (252)
T CHL00131 131 NEKLKLVGMDPSFLSR-NVNEGFSGGEKKRNEILQMAL 167 (252)
T ss_pred HHHHHHcCCchhhhcc-ccccCCCHHHHHHHHHHHHHH
Confidence 67899999974 3443 555 59999999999999974
No 250
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=201.30 Aligned_cols=146 Identities=23% Similarity=0.271 Sum_probs=110.3
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~ 250 (356)
++++++++|+++.| ++..+|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.++|.++....
T Consensus 36 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~-- 112 (286)
T PRK14275 36 GKPHVVAKNFSIYY-GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF-- 112 (286)
T ss_pred CceEEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc--
Confidence 56789999999999 45679999999999999999999999999999999999864 49999999987642000
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~ 322 (356)
.. ....+.+++|++|++. +++. |+.+++... .+. . .+.+.+
T Consensus 113 ---------------------------~~-~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~ 161 (286)
T PRK14275 113 ---------------------------TD-EVLLRKKIGMVFQKPN--PFPK-SIFDNIAYGPRLHGINDKKQLEEIVEK 161 (286)
T ss_pred ---------------------------cc-hHHhhhcEEEECCCCC--CCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHH
Confidence 00 0012346999999973 5554 999987532 122 1 123556
Q ss_pred HHhhcCCC----CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~----~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+++. +.. .+++.+|||||||||+||++++
T Consensus 162 ~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 162 SLRKAALWDEVSDRL-DKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred HHHHhCCccchhhHh-hCChhhCCHHHHHHHHHHHHHh
Confidence 78888874 223 3467999999999999999974
No 251
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.8e-24 Score=216.57 Aligned_cols=132 Identities=30% Similarity=0.484 Sum_probs=107.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ml~i~~ls~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~----------------- 62 (530)
T PRK15064 1 MLSTANITMQF-GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP----------------- 62 (530)
T ss_pred CEEEEEEEEEe-CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------------
Confidence 47899999999 566899999999999999999999999999999999999999999998863
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--------------CC---------
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--------------NL--------- 315 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--------------~~--------- 315 (356)
..++||++|++ .+++..|+.+++.... ..
T Consensus 63 --------------------------~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (530)
T PRK15064 63 --------------------------NERLGKLRQDQ--FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGM 114 (530)
T ss_pred --------------------------CCEEEEEeccC--CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHH
Confidence 12589999986 3667788877754210 00
Q ss_pred ----------------CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 316 ----------------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 316 ----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
....+.++|+.+|+......+++.+|||||||||+||++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~ 171 (530)
T PRK15064 115 KVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF 171 (530)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence 02345678999999764444578999999999999999974
No 252
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=2.5e-24 Score=191.08 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=103.9
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|++. ..+++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 75 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI--------- 75 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC---------
Confidence 458999999999532 4799999999999999999999999999999999999999999999998764200
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
. ....+..++|++|++ .+++ .|+.+++.........++.+.++ + . .
T Consensus 76 ----------------------~-~~~~~~~i~~v~q~~--~~~~-~tv~~~l~~~~~~~~~~~~~~l~---~----~-~ 121 (207)
T cd03369 76 ----------------------P-LEDLRSSLTIIPQDP--TLFS-GTIRSNLDPFDEYSDEEIYGALR---V----S-E 121 (207)
T ss_pred ----------------------C-HHHHHhhEEEEecCC--cccC-ccHHHHhcccCCCCHHHHHHHhh---c----c-C
Confidence 0 000134699999997 3555 48888874332233344444444 2 2 3
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++..|||||+|||+||++++
T Consensus 122 ~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHh
Confidence 56899999999999999974
No 253
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.4e-24 Score=197.70 Aligned_cols=145 Identities=27% Similarity=0.382 Sum_probs=110.8
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| +++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 19 ~~~l~i~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~---- 93 (276)
T PRK14271 19 APAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY---- 93 (276)
T ss_pred CcEEEEeeEEEEE-CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc----
Confidence 5689999999999 567899999999999999999999999999999999999986 699999998765200
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-CCHH----HHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPYE----KSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-~~~~----~~~~~ 323 (356)
.. ....+..++|++|++. +++ .|+.+++.... . .+.. .+.+.
T Consensus 94 --------------------------~~-~~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 143 (276)
T PRK14271 94 --------------------------RD-VLEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQAR 143 (276)
T ss_pred --------------------------ch-hHHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 00 0011346999999873 565 78988875321 1 2222 23567
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++... ...+++.+|||||+|||+||++++
T Consensus 144 l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~ 179 (276)
T PRK14271 144 LTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179 (276)
T ss_pred HHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 888888642 123467899999999999999974
No 254
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=209.95 Aligned_cols=143 Identities=33% Similarity=0.452 Sum_probs=114.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++|+++.|++++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||++...-
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l----------- 388 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL----------- 388 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc-----------
Confidence 356679999998777999999999999999999999999999999999999999999999999875311
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc--
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT-- 335 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-- 335 (356)
+ ....+.+++|++|+|. ++ .-|+.||+... .+.+++++.++++..|+.+....
T Consensus 389 -----------------~----~~~~~k~i~~v~Q~p~--lf-~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~ 444 (559)
T COG4988 389 -----------------S----PEAWRKQISWVSQNPY--LF-AGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPD 444 (559)
T ss_pred -----------------C----HHHHHhHeeeeCCCCc--cc-cccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCC
Confidence 0 0112467999999983 44 55889988654 34677888888888877544332
Q ss_pred ---CCCC----CCChHHHHHHHHHHHcC
Q psy2684 336 ---IPIR----DLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ---~~~~----~LSGGqkqRvalA~~~l 356 (356)
..+. .|||||+|||+|||+++
T Consensus 445 GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 445 GLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred cccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 2233 49999999999999985
No 255
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=189.09 Aligned_cols=137 Identities=23% Similarity=0.418 Sum_probs=117.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.+++++|+++| +.+.+++|+||++++|++++++|||||||||++++|.|++.|++|+|.|+|.++.
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~------------- 67 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS------------- 67 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh-------------
Confidence 47999999999 7888999999999999999999999999999999999999999999999986653
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHH---HhcCCCHHH----HHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEK----SRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~---~~~~~~~~~----~~~~L~~~~l~~ 331 (356)
.....+|||+|.+. .+++.+|+.|.+. ...+.+..+ +..||+++++..
T Consensus 68 -----------------------~~~~~rIGyLPEER--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~ 122 (300)
T COG4152 68 -----------------------QEIKNRIGYLPEER--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG 122 (300)
T ss_pred -----------------------hhhhhhcccChhhh--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc
Confidence 12245799999875 5999999998764 345666544 557899999998
Q ss_pred ccccCCCCCCChHHHHHHHHHHHc
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
...+ ++.+||-|++|++.+..++
T Consensus 123 ~~~~-kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 123 KKTK-KIKELSKGNQQKIQFISAV 145 (300)
T ss_pred cccc-hHHHhhhhhhHHHHHHHHH
Confidence 7765 8999999999999987765
No 256
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.9e-25 Score=194.78 Aligned_cols=129 Identities=29% Similarity=0.417 Sum_probs=103.9
Q ss_pred ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCC
Q psy2684 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 276 (356)
Q Consensus 197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~ 276 (356)
=+++|+++.-.++||.|+||||||||+|+|+|+.+|++|.|.+||.-+... .
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds-------------~--------------- 66 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDA-------------E--------------- 66 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecc-------------c---------------
Confidence 357888888789999999999999999999999999999999998655311 0
Q ss_pred cceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 277 KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 277 ~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
.+-.....+++||||||+. .+||.+|+..|+.... .....+..++.+.+|+.+...++| .+|||||||||||+|+|
T Consensus 67 k~i~lp~~~RriGYVFQDA--RLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSGGEkQRVAIGRAL 143 (352)
T COG4148 67 KGIFLPPEKRRIGYVFQDA--RLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCcccChhhheeeeEeecc--ccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCC-CccCcchhhHHHHHHHH
Confidence 1111112356899999996 5999999999886432 334566788999999999988755 89999999999999998
Q ss_pred C
Q psy2684 356 L 356 (356)
Q Consensus 356 l 356 (356)
|
T Consensus 144 L 144 (352)
T COG4148 144 L 144 (352)
T ss_pred h
Confidence 5
No 257
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1e-24 Score=182.59 Aligned_cols=146 Identities=26% Similarity=0.312 Sum_probs=115.6
Q ss_pred CcEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684 178 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME 249 (356)
Q Consensus 178 ~~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~ 249 (356)
++++|+|+++.|.. ...+++.|||++++|+.++|+|.||||||||.++|+|+++|++|+|.+||..+..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--- 79 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--- 79 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc---
Confidence 46889999987742 1248899999999999999999999999999999999999999999999876531
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSR 321 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~ 321 (356)
+.. ..+..+|-++||+|+..++|.+.+...+-.. ...+. +++.
T Consensus 80 ----------------------------~Dy-~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~ 130 (267)
T COG4167 80 ----------------------------GDY-SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIF 130 (267)
T ss_pred ----------------------------cch-HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHH
Confidence 111 1123568899999998899988877665332 12222 3456
Q ss_pred HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+-|..+|+-++-....+..||-||||||||||+|
T Consensus 131 ~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL 164 (267)
T COG4167 131 ETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL 164 (267)
T ss_pred HHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence 7799999976655567799999999999999997
No 258
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=195.75 Aligned_cols=144 Identities=26% Similarity=0.325 Sum_probs=107.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia 253 (356)
.++++|+++.| +++.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~------ 75 (250)
T PRK14240 3 KISVKDLDLFY-GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS------ 75 (250)
T ss_pred eEEEEEEEEEE-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc------
Confidence 47899999999 456799999999999999999999999999999999999863 699999998765210
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~L~ 325 (356)
... ....+..++|++|++. +++ .|+.+++... .+. . .+.+.++++
T Consensus 76 -----------------------~~~-~~~~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~ 128 (250)
T PRK14240 76 -----------------------DID-VNQLRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLK 128 (250)
T ss_pred -----------------------ccc-hHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 000 0011346999999863 565 7888887532 221 1 234556788
Q ss_pred hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.. ....+++.+|||||||||+||++++
T Consensus 129 ~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred HcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 888742 1223477999999999999999974
No 259
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-25 Score=190.21 Aligned_cols=142 Identities=22% Similarity=0.389 Sum_probs=111.2
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
|++++|+++.| +++.+++++|++|++|.+++|+|||||||||||.++++++++++|+|+++|.++.....+
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~-------- 71 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK-------- 71 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChH--------
Confidence 57899999999 788999999999999999999999999999999999999999999999999987522110
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-c----C-C---CHHHHHHHHhhcCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F----N-L---PYEKSRRQLGMFGL 329 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~----~-~---~~~~~~~~L~~~~l 329 (356)
.|+ .+++.+-|.. .+....|+.+.+... + + . +...+.++++.++|
T Consensus 72 -----~LA-------------------k~lSILkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L 125 (252)
T COG4604 72 -----ELA-------------------KKLSILKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL 125 (252)
T ss_pred -----HHH-------------------HHHHHHHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc
Confidence 121 2344455654 355677888876431 1 1 1 22346788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..++ ...+||||||||+-||.+++
T Consensus 126 ~~l~dr-yLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 126 EDLSDR-YLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred cchHHH-hHHhcccchhhhhhhheeee
Confidence 887765 67999999999999998764
No 260
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.1e-24 Score=195.47 Aligned_cols=145 Identities=26% Similarity=0.377 Sum_probs=108.3
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~------ 76 (252)
T PRK14272 4 LLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP------ 76 (252)
T ss_pred EEEEeeeEEEE-CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC------
Confidence 68999999999 4667999999999999999999999999999999999999874 89999998765210
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CHH----HHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PYE----KSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~~----~~~~~L~ 325 (356)
. .. ....+..++|++|++ .+++..|+.+++.... +. ..+ .+.+.+.
T Consensus 77 ----------------------~-~~-~~~~~~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~ 130 (252)
T PRK14272 77 ----------------------R-VD-PVAMRRRVGMVFQKP--NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLR 130 (252)
T ss_pred ----------------------c-cC-HHHhhceeEEEeccC--ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 0 00 001134699999986 3777789999875321 21 222 2344566
Q ss_pred hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.. ....+++.+||||||||++||++++
T Consensus 131 ~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred HcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 666532 1224578999999999999999874
No 261
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=198.05 Aligned_cols=147 Identities=23% Similarity=0.256 Sum_probs=109.1
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~ 250 (356)
+.++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 17 ~~~~l~~~nl~~~~-~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~--- 92 (274)
T PRK14265 17 DHSVFEVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS--- 92 (274)
T ss_pred CCceEEEeeEEEEe-CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc---
Confidence 35689999999999 456799999999999999999999999999999999999863 689999998765210
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC---CHHHHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL---PYEKSRRQL 324 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~---~~~~~~~~L 324 (356)
... ....+.+++|++|++. +++ .++.+++.... .. ....+.+.+
T Consensus 93 --------------------------~~~-~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l 142 (274)
T PRK14265 93 --------------------------QIN-SVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSL 142 (274)
T ss_pred --------------------------cch-hHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHH
Confidence 000 0011347999999873 555 48888875321 11 123345677
Q ss_pred hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++.. ....+++.+|||||||||+||++++
T Consensus 143 ~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 143 RRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 7777632 1223477999999999999999974
No 262
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=196.82 Aligned_cols=145 Identities=22% Similarity=0.282 Sum_probs=109.3
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| +.+.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~---- 77 (251)
T PRK14251 3 NIISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK---- 77 (251)
T ss_pred ceEEEEeeEEEE-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc----
Confidence 468999999999 55679999999999999999999999999999999999997 47999999987652100
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~L 324 (356)
.. ....+..++|++|++. +++ .|+.+++... .+.. ...+.+++
T Consensus 78 -------------------------~~-~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l 128 (251)
T PRK14251 78 -------------------------MD-LVELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESL 128 (251)
T ss_pred -------------------------ch-HHHhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 00 0011346999999863 554 6898887532 1211 13456678
Q ss_pred hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++.. ...++++.+||||||||++||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 129 KQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred HHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 8888842 1223467999999999999999974
No 263
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=198.73 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=108.3
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES 250 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~ 250 (356)
..++++++|+++.| ++..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 21 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~--- 96 (271)
T PRK14238 21 KKVVFDTQNLNLWY-GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK--- 96 (271)
T ss_pred CceEEEEeeeEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc---
Confidence 35689999999999 45679999999999999999999999999999999999997 6999999998765210
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-H----HHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRR 322 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-~----~~~~~ 322 (356)
... ....+..++|++|++. +++ .|+.+++... .+.. . ..+.+
T Consensus 97 --------------------------~~~-~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~ 146 (271)
T PRK14238 97 --------------------------SYS-VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEK 146 (271)
T ss_pred --------------------------ccc-HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 000 0011346999999973 555 4888887532 1222 1 22345
Q ss_pred HHhhcCC----CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGL----PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l----~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+++ .+... +++.+|||||||||+||++++
T Consensus 147 ~l~~~~~~~~l~~~~~-~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 147 SLRGAAIWDELKDRLH-DNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred HHHHcCCcchHHHHHh-cCcccCCHHHHHHHHHHHHHH
Confidence 5666643 33333 467999999999999999974
No 264
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=1.5e-24 Score=200.20 Aligned_cols=140 Identities=26% Similarity=0.326 Sum_probs=110.9
Q ss_pred EEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++ +..+|+++||+|.+||+++|+|+||||||||+++|+|+++ ++|+|+++|.++...
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~----------- 70 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV----------- 70 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC-----------
Confidence 689999999953 4569999999999999999999999999999999999998 789999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
. ....+.+++|++|++. +++ .|+.+++........++++++++.+|+...... .+
T Consensus 71 --------------------~-~~~lr~~i~~v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~-~p 125 (275)
T cd03289 71 --------------------P-LQKWRKAFGVIPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ-FP 125 (275)
T ss_pred --------------------C-HHHHhhhEEEECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHh-Cc
Confidence 0 0001346999999974 565 488888743323456778889999999765544 34
Q ss_pred CC-----------CChHHHHHHHHHHHcC
Q psy2684 339 RD-----------LSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~-----------LSGGqkqRvalA~~~l 356 (356)
.. ||||||||++|||+++
T Consensus 126 ~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 126 GQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred ccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 54 9999999999999975
No 265
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.8e-24 Score=196.30 Aligned_cols=145 Identities=21% Similarity=0.271 Sum_probs=109.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~----- 75 (250)
T PRK14262 2 PIIEIENFSAYY-GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP----- 75 (250)
T ss_pred ceEEEEeeEEEe-CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc-----
Confidence 368999999999 456799999999999999999999999999999999999984 899999998765210
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L 324 (356)
... ....+..++|++|++. +++ .|+.+++... .+. .. ..+.+++
T Consensus 76 ------------------------~~~-~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l 127 (250)
T PRK14262 76 ------------------------QLD-VTEYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESL 127 (250)
T ss_pred ------------------------hhh-HHHhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 000 0011346999999863 555 7888887532 121 11 2355678
Q ss_pred hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++... ...+++.+||||||||++||++++
T Consensus 128 ~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 128 KKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred HHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 88888532 133477999999999999999974
No 266
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.2e-25 Score=192.68 Aligned_cols=148 Identities=30% Similarity=0.479 Sum_probs=114.2
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.+++++++|+++.| +++.+|+|+||+|++||.++|+||||||||||+++++|.++|++|.+.+.|..+.
T Consensus 28 ~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G---------- 96 (257)
T COG1119 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG---------- 96 (257)
T ss_pred CcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeecc----------
Confidence 45789999999999 7889999999999999999999999999999999999999999999999988762
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------c--CCC---HHHHHHH
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------F--NLP---YEKSRRQ 323 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~--~~~---~~~~~~~ 323 (356)
.|.+ ....+.+|||+.-.....+..+.++.|.+... + ..+ ...+..+
T Consensus 97 ----~~~~-----------------~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l 155 (257)
T COG1119 97 ----KGET-----------------IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL 155 (257)
T ss_pred ----CCcc-----------------hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH
Confidence 1111 11224567777654433444555555544321 1 112 2346678
Q ss_pred HhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+|+.+..+ +++.+||-||||||.|||+++
T Consensus 156 le~~g~~~la~-r~~~~LS~Ge~rrvLiaRALv 187 (257)
T COG1119 156 LELLGAKHLAD-RPFGSLSQGEQRRVLIARALV 187 (257)
T ss_pred HHHcchhhhcc-CchhhcCHhHHHHHHHHHHHh
Confidence 99999998665 588999999999999999974
No 267
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=1.7e-24 Score=196.15 Aligned_cols=141 Identities=25% Similarity=0.406 Sum_probs=103.2
Q ss_pred EEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++ +.++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA----------- 69 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-----------
Confidence 468999999953 35699999999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHH---------HHhhc-
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRR---------QLGMF- 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~---------~L~~~- 327 (356)
.. ...+..++|++|++. ++ ..|+.+++.... ......+.+ ++..+
T Consensus 70 ------------------~~---~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 125 (237)
T cd03252 70 ------------------DP---AWLRRQVGVVLQENV--LF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELP 125 (237)
T ss_pred ------------------CH---HHHhhcEEEEcCCch--hc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence 00 001346999999863 44 468888875321 122222222 33333
Q ss_pred -CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 -GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 -~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++..... +++.+|||||||||+||++++
T Consensus 126 ~~~~~~~~-~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 126 EGYDTIVG-EQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred ccccchhh-cCCCcCCHHHHHHHHHHHHHh
Confidence 3443333 367999999999999999974
No 268
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.9e-24 Score=208.18 Aligned_cols=145 Identities=26% Similarity=0.407 Sum_probs=119.1
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
..++++++|++|+| ++..+|+++||+|++||+++|+|.||||||||+|+|+|.++|++|+|.++|......
T Consensus 5 ~~~ll~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~-------- 75 (500)
T COG1129 5 TPPLLELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS-------- 75 (500)
T ss_pred ccceeeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCC--------
Confidence 35689999999999 678899999999999999999999999999999999999999999999998765321
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------C-CC----HHHHHHHH
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------N-LP----YEKSRRQL 324 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~-~~----~~~~~~~L 324 (356)
.........|+.++|+. .+.|++|+.||+.... + ++ ...++++|
T Consensus 76 -----------------------sp~~A~~~GI~~V~QEl--~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 76 -----------------------SPRDALAAGIATVHQEL--SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELL 130 (500)
T ss_pred -----------------------CHHHHHhCCcEEEeech--hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHH
Confidence 00111235689999997 4999999999985321 1 12 24577889
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+.+|+... -+.++.+||+||||-|+|||++
T Consensus 131 ~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 131 ARLGLDID-PDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred HHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence 99999644 4458999999999999999986
No 269
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=196.10 Aligned_cols=145 Identities=25% Similarity=0.306 Sum_probs=108.8
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc---ccc--CCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE---LTP--NKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl---~~p--~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++....
T Consensus 2 ~~l~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 76 (250)
T PRK14245 2 VKIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG---- 76 (250)
T ss_pred cEEEEEEEEEEE-CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc----
Confidence 578999999999 456799999999999999999999999999999999997 455 5899999987653100
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~L 324 (356)
.. ....+..++|++|++. +++ .|+.+++... .+.. ...+.+++
T Consensus 77 -------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l 127 (250)
T PRK14245 77 -------------------------VQ-VDELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETL 127 (250)
T ss_pred -------------------------cc-HHHHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 00 0011346999999863 555 5888887532 1211 13456788
Q ss_pred hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+++.+. ...+++.+|||||||||+||++++
T Consensus 128 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 128 KGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred HHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 99998542 223467999999999999999874
No 270
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=4.3e-24 Score=189.20 Aligned_cols=128 Identities=28% Similarity=0.366 Sum_probs=98.2
Q ss_pred EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
++++|+++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 4689999999543 3699999999999999999999999999999999999999999998863
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCC------
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL------ 329 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l------ 329 (356)
+++|++|++. ++ ..|+.+++............+.+..+++
T Consensus 67 -------------------------------~i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (204)
T cd03250 67 -------------------------------SIAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEI 112 (204)
T ss_pred -------------------------------EEEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHh
Confidence 4899999974 44 4688888754322222233333333332
Q ss_pred -----CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 -----PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 -----~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... .++.+||||||||++||++++
T Consensus 113 ~~~~~~~~~~-~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 113 LPDGDLTEIG-EKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred ccCcccceec-CCCCcCCHHHHHHHHHHHHHh
Confidence 22223 356899999999999999974
No 271
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.90 E-value=2.1e-24 Score=219.24 Aligned_cols=142 Identities=31% Similarity=0.480 Sum_probs=111.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++|+++.|++++++++|+||+|++||++||+|||||||||++++|.|++.|++|+|.++|+++..-
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i----------- 396 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI----------- 396 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc-----------
Confidence 389999999996567899999999999999999999999999999999999999999999999887411
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC---------
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG--------- 328 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~--------- 328 (356)
. ....+.+|+|++|++ .+|. .|+.+|+.... +.+.+++.+.++..+
T Consensus 397 -----------------~----~~~lr~~I~~V~Qd~--~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp 452 (567)
T COG1132 397 -----------------S----LDSLRKRIGIVSQDP--LLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLP 452 (567)
T ss_pred -----------------C----HHHHHHhccEEcccc--eeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 0 011245799999997 4665 78999986543 356666666655443
Q ss_pred --CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 --LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 --l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++..... .-..||||||||++|||+++
T Consensus 453 ~g~dt~vge-~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 453 DGYDTIVGE-RGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred ccccceecC-CCccCCHHHHHHHHHHHHHh
Confidence 3222222 22579999999999999975
No 272
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.90 E-value=2.4e-24 Score=217.17 Aligned_cols=143 Identities=36% Similarity=0.443 Sum_probs=112.9
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|++++|+++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~--------- 390 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD--------- 390 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC---------
Confidence 58999999999654 36999999999999999999999999999999999999999999999998763100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT- 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~- 335 (356)
....+.+++|++|++. +| +.|+.|++... ...+++++.+.++..++.+....
T Consensus 391 -----------------------~~~lr~~i~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 391 -----------------------ADSWRDQIAWVPQHPF--LF-AGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred -----------------------HHHHHhheEEEcCCCc--cc-CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 0112357999999973 55 46999998653 23466777888887776432211
Q ss_pred ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ---------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ---------~~~~~LSGGqkqRvalA~~~l 356 (356)
.....||||||||++|||+++
T Consensus 445 p~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred cccccchhccccccCCHHHHHHHHHHHHHh
Confidence 123679999999999999975
No 273
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.4e-24 Score=199.30 Aligned_cols=152 Identities=28% Similarity=0.280 Sum_probs=112.8
Q ss_pred CCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccc
Q psy2684 171 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFG 245 (356)
Q Consensus 171 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~ 245 (356)
.+....++++.++|+++.| ++..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 37 ~~~~~~~~~l~i~nl~~~~-~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 37 DYEFDGDAKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ccccCCCceEEEEEEEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3344456789999999999 45679999999999999999999999999999999999986 68999999987652
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------------
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------------ 313 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------------ 313 (356)
.. + .. ....+.+++|++|++. +++ .|+.+++....
T Consensus 116 ~~--------~---------------------~~-~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~ 162 (305)
T PRK14264 116 QD--------G---------------------VN-LVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLA 162 (305)
T ss_pred cc--------c---------------------cc-HHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccc
Confidence 10 0 00 0011346999999863 555 48888875321
Q ss_pred ---CCC-----HHHHHHHHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 ---NLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 ---~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ...+.++++.+++.. ....+++.+|||||||||+||++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 163 RLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 011 234567788888742 1223467999999999999999974
No 274
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7e-24 Score=196.04 Aligned_cols=146 Identities=24% Similarity=0.269 Sum_probs=110.4
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 23 ~~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~--- 98 (272)
T PRK14236 23 QTALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK--- 98 (272)
T ss_pred CcEEEEEEEEEEE-CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc---
Confidence 4589999999999 456799999999999999999999999999999999999884 8999999987653100
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~ 323 (356)
.. ....+..++|++|++. +++. |+.+++... .+. . ...+.++
T Consensus 99 --------------------------~~-~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~ 148 (272)
T PRK14236 99 --------------------------VD-VAELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERS 148 (272)
T ss_pred --------------------------cC-HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 00 0011346999999863 5655 888887532 121 1 1235667
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++... ...+++.+|||||||||+||++++
T Consensus 149 l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 149 LRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred HHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 888888531 223467999999999999999974
No 275
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.6e-24 Score=184.82 Aligned_cols=111 Identities=29% Similarity=0.508 Sum_probs=92.5
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|+ +..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 67 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE------------ 67 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc------------
Confidence 46899999994 55799999999999999999999999999999999999999999999998764200
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 339 (356)
....+..++|++|++. +++..|+.+++.
T Consensus 68 ---------------------~~~~~~~i~~~~q~~~--~~~~~tv~~~~~----------------------------- 95 (173)
T cd03230 68 ---------------------PEEVKRRIGYLPEEPS--LYENLTVRENLK----------------------------- 95 (173)
T ss_pred ---------------------hHhhhccEEEEecCCc--cccCCcHHHHhh-----------------------------
Confidence 0111346999999863 667778887752
Q ss_pred CCChHHHHHHHHHHHcC
Q psy2684 340 DLSGGQKARVALAELTL 356 (356)
Q Consensus 340 ~LSGGqkqRvalA~~~l 356 (356)
|||||+|||+||++++
T Consensus 96 -LS~G~~qrv~laral~ 111 (173)
T cd03230 96 -LSGGMKQRLALAQALL 111 (173)
T ss_pred -cCHHHHHHHHHHHHHH
Confidence 9999999999999974
No 276
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=1.7e-24 Score=225.34 Aligned_cols=143 Identities=28% Similarity=0.358 Sum_probs=112.4
Q ss_pred cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.++++|++|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~--------- 547 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP--------- 547 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC---------
Confidence 5899999999964 357999999999999999999999999999999999999999999999998864100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT- 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~- 335 (356)
....+.++||++|++. +| +.|+.||+... ...+.+++++.++..++.+....
T Consensus 548 -----------------------~~~lr~~i~~v~Q~~~--lf-~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~l 601 (710)
T TIGR03796 548 -----------------------REVLANSVAMVDQDIF--LF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSR 601 (710)
T ss_pred -----------------------HHHHHhheeEEecCCh--hh-hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 0012457999999973 55 56899998643 24566777777777665432111
Q ss_pred ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ---------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ---------~~~~~LSGGqkqRvalA~~~l 356 (356)
..-..||||||||++|||+++
T Consensus 602 p~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 602 PGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred cCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 123579999999999999975
No 277
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.90 E-value=1.6e-24 Score=225.53 Aligned_cols=142 Identities=27% Similarity=0.369 Sum_probs=112.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++|++|+|++++++|+|+||+|++|++++|+|+||||||||+++|+|++.|++|+|+++|.++..-
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~----------- 541 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI----------- 541 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc-----------
Confidence 489999999996556799999999999999999999999999999999999999999999999886310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHhhcCCCCc----
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSY---- 332 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~~~~~~~~~~~L~~~~l~~~---- 332 (356)
. ....+.++||++|++. +| +.|+.|++... ...+.+++.+.++..++.+.
T Consensus 542 ---------------~------~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~l 597 (708)
T TIGR01193 542 ---------------D------RHTLRQFINYLPQEPY--IF-SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENM 597 (708)
T ss_pred ---------------C------HHHHHHheEEEecCce--eh-hHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhc
Confidence 0 0012457999999973 55 45999998754 34566777777776665321
Q ss_pred -------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 -------AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 -------~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ....||||||||++|||+++
T Consensus 598 p~gldt~i~e-~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 598 PLGYQTELSE-EGSSISGGQKQRIALARALL 627 (708)
T ss_pred ccccCcEecC-CCCCCCHHHHHHHHHHHHHh
Confidence 112 23579999999999999974
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=1.5e-24 Score=216.66 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=107.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~----------- 70 (490)
T PRK10938 3 SLQISQGTFRL-SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL----------- 70 (490)
T ss_pred eEEEEeEEEEc-CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC-----------
Confidence 58999999999 456799999999999999999999999999999999999999999999876543100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCC------CCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP------DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~------~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~ 332 (356)
.. ...+..++|++|++...++. ..++.+++... ....+.+.++++.+|+.+.
T Consensus 71 --------------------~~-~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~ 128 (490)
T PRK10938 71 --------------------SF-EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITAL 128 (490)
T ss_pred --------------------CH-HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhh
Confidence 00 00123489999976422221 34566654211 1123457789999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+ +++.+|||||||||+||++++
T Consensus 129 ~~-~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 129 LD-RRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred hh-CCcccCCHHHHHHHHHHHHHH
Confidence 54 478999999999999999974
No 279
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.2e-24 Score=193.74 Aligned_cols=145 Identities=26% Similarity=0.305 Sum_probs=108.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~-~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 77 (251)
T PRK14249 3 PKIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN---- 77 (251)
T ss_pred ceEEEEEEEEEE-CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc----
Confidence 468999999999 4567999999999999999999999999999999999999997 699999986642100
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~L 324 (356)
.. ....+..++|++|++. +++. |+.+++... .+.. ...+.+.+
T Consensus 78 -------------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l 128 (251)
T PRK14249 78 -------------------------LD-VVNLRKRVGMVFQQPN--PFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSL 128 (251)
T ss_pred -------------------------cC-hHHhhceEEEEecCCc--cCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHH
Confidence 00 0011356999999973 5554 888887532 1221 12345567
Q ss_pred hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+++.+. ...+++.+|||||||||+||++++
T Consensus 129 ~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 129 RQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred HHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 77776421 223467999999999999999974
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-24 Score=213.97 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=110.3
Q ss_pred EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG 261 (356)
Q Consensus 182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G 261 (356)
++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~~nl~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------------- 66 (491)
T PRK10982 1 MSNISKSF-PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS------------- 66 (491)
T ss_pred CCceEEEe-CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC-------------
Confidence 46899999 5667999999999999999999999999999999999999999999999987653100
Q ss_pred hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----CC--C----HHHHHHHHhhcCCCC
Q psy2684 262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----NL--P----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~~--~----~~~~~~~L~~~~l~~ 331 (356)
.....+..++|++|++ .+++..|+.+++.... +. . ...+.++++.+++..
T Consensus 67 ------------------~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 126 (491)
T PRK10982 67 ------------------SKEALENGISMVHQEL--NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126 (491)
T ss_pred ------------------HHHHHhCCEEEEeccc--ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC
Confidence 0000124699999986 3677889999875321 11 1 134667899999987
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+ +++.+|||||||||+||++++
T Consensus 127 ~~~-~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 127 DPR-AKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred Ccc-CchhhCCHHHHHHHHHHHHHH
Confidence 655 467999999999999999974
No 281
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.5e-24 Score=186.56 Aligned_cols=85 Identities=36% Similarity=0.583 Sum_probs=77.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.+|.+.+|||||+||++|||||+.+|++|||||||++||+.....+.++|. +++.|+|+||||...+..+||||++
T Consensus 135 l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 135 LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred HhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence 468899999999999999999999999999999999999988766666554 4678999999999999999999999
Q ss_pred EeCCeEeEe
Q psy2684 78 LDMKKLFYY 86 (356)
Q Consensus 78 l~~g~~~~~ 86 (356)
|++|++++.
T Consensus 215 m~~G~ivE~ 223 (252)
T COG1124 215 MDNGQIVEI 223 (252)
T ss_pred eeCCeEEEe
Confidence 999999975
No 282
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.5e-24 Score=193.78 Aligned_cols=143 Identities=24% Similarity=0.292 Sum_probs=107.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~------ 75 (249)
T PRK14253 3 KFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN------ 75 (249)
T ss_pred eEEEeccEEEE-CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc------
Confidence 58999999999 456799999999999999999999999999999999999986 599999998764200
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-H----HHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-~----~~~~~~L~ 325 (356)
... ...+..++|++|++. +++ .|+.+++... .+.. . ..+.+.++
T Consensus 76 ------------------------~~~-~~~~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 127 (249)
T PRK14253 76 ------------------------IDV-ADLRIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLR 127 (249)
T ss_pred ------------------------cch-HHHHhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHH
Confidence 000 011346999999863 565 7888887532 1221 1 23455677
Q ss_pred hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++... ..+.++.+|||||||||+||++++
T Consensus 128 ~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 128 GAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 8887431 223467999999999999999974
No 283
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=3.1e-24 Score=218.00 Aligned_cols=144 Identities=30% Similarity=0.406 Sum_probs=115.4
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~-------- 408 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS-------- 408 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC--------
Confidence 358999999999653 56999999999999999999999999999999999999999999999998763100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
....+..++|++|++. +|+ .|+.||+... .+.+.+++.+.++.+++.+....
T Consensus 409 ------------------------~~~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 409 ------------------------EAALRQAISVVSQRVH--LFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred ------------------------HHHHHhheeEEcccch--hhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 0112356999999973 554 5899998643 34577788889999888654332
Q ss_pred ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ---------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ---------~~~~~LSGGqkqRvalA~~~l 356 (356)
.....||||||||++|||+++
T Consensus 462 p~GldT~vge~g~~LSgGqrqRialARall 491 (574)
T PRK11160 462 DKGLNAWLGEGGRQLSGGEQRRLGIARALL 491 (574)
T ss_pred ccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 123579999999999999975
No 284
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.6e-24 Score=178.00 Aligned_cols=147 Identities=28% Similarity=0.459 Sum_probs=119.4
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
+.++++.+.| |...+|.|++|+-+.||.+.++||||+|||||++.+.-+.-|.+|+..+-|..|..+.
T Consensus 3 irv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~----------- 70 (242)
T COG4161 3 IQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK----------- 70 (242)
T ss_pred eEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccccc-----------
Confidence 6889999999 6677999999999999999999999999999999999999999999999877664321
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCHH----HHHHHHhhcCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPYE----KSRRQLGMFGLPS 331 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~~----~~~~~L~~~~l~~ 331 (356)
.|....+ ...++++|++||.+ .+.|.+|+.|++... .+.+.+ ++.++|+++.+..
T Consensus 71 --------------~~~~k~i-~~lr~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~ 133 (242)
T COG4161 71 --------------TPSDKAI-RDLRRNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133 (242)
T ss_pred --------------CccHHHH-HHHHHhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence 0111111 12256799999986 589999999998643 345543 4567899999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++.| -.|||||+|||||||+|+
T Consensus 134 ~adr~p-lhlsggqqqrvaiaralm 157 (242)
T COG4161 134 YADRYP-LHLSGGQQQRVAIARALM 157 (242)
T ss_pred ccccCc-eecccchhhhHHHHHHHh
Confidence 888765 689999999999999974
No 285
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.7e-24 Score=192.97 Aligned_cols=146 Identities=26% Similarity=0.309 Sum_probs=108.0
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc--c---CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~--p---~~G~i~~~g~~~~~~~~~~ 251 (356)
+++++++|+++.| +.+.+|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~---- 77 (252)
T PRK14255 3 KKIITSSDVHLFY-GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP---- 77 (252)
T ss_pred cceEEEEeEEEEE-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc----
Confidence 4679999999999 45679999999999999999999999999999999999975 5 589999998765200
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~ 323 (356)
. .. ....+..++|++|++. +++ .|+.+++... .+. . ...+.+.
T Consensus 78 ------------------------~-~~-~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~ 128 (252)
T PRK14255 78 ------------------------N-ED-VVQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETS 128 (252)
T ss_pred ------------------------c-cc-HHHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 0 00 0011346999999863 555 6888887532 121 1 1234556
Q ss_pred HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++.. ....+++.+|||||||||+||++++
T Consensus 129 l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 129 LKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred HHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 77777632 1223467999999999999999974
No 286
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=5.7e-24 Score=192.62 Aligned_cols=134 Identities=29% Similarity=0.402 Sum_probs=102.1
Q ss_pred eeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHH
Q psy2684 187 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 266 (356)
Q Consensus 187 ~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll 266 (356)
+.| +.+++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+...
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-------------------- 87 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-------------------- 87 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc--------------------
Confidence 455 45679999999999999999999999999999999999999999999998764310
Q ss_pred HHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCccccCCCC
Q psy2684 267 NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIR 339 (356)
Q Consensus 267 ~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~ 339 (356)
.....+..++|++|+. ..+++..|+.+++... .+... ..+..+++.+|+.+..+. ++.
T Consensus 88 -------------~~~~~~~~i~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~ 152 (236)
T cd03267 88 -------------RRKKFLRRIGVVFGQK-TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-PVR 152 (236)
T ss_pred -------------cchhhcccEEEEcCCc-cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-Chh
Confidence 0011134689998542 2466778998876432 22222 235567889999765554 679
Q ss_pred CCChHHHHHHHHHHHcC
Q psy2684 340 DLSGGQKARVALAELTL 356 (356)
Q Consensus 340 ~LSGGqkqRvalA~~~l 356 (356)
+||||||||++||++++
T Consensus 153 ~LS~G~~qrl~la~al~ 169 (236)
T cd03267 153 QLSLGQRMRAEIAAALL 169 (236)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 99999999999999974
No 287
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.7e-24 Score=192.36 Aligned_cols=141 Identities=30% Similarity=0.413 Sum_probs=104.1
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++. ..+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY----------- 69 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC-----------
Confidence 4689999999432 2699999999999999999999999999999999999999999999998654200
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH---------HHHHhhc-
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS---------RRQLGMF- 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~---------~~~L~~~- 327 (356)
. ....+..++|++|++. +++ .|+.+++.... ......+ .+++..+
T Consensus 70 --------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 125 (234)
T cd03251 70 --------------------T-LASLRRQIGLVSQDVF--LFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELP 125 (234)
T ss_pred --------------------C-HHHHHhhEEEeCCCCe--ecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 0 0001346899999863 554 58888875321 1222222 2344444
Q ss_pred -CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 -GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 -~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++..... .++.+|||||||||+||++++
T Consensus 126 ~~l~~~~~-~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 126 EGYDTVIG-ERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred cCcceeec-cCCCcCCHHHHHHHHHHHHHh
Confidence 5555444 367999999999999999974
No 288
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7e-24 Score=195.22 Aligned_cols=145 Identities=25% Similarity=0.260 Sum_probs=107.6
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| ++..+|+++||+|.+||+++|+|+||||||||+++|+|++. |++|+|.++|.++....
T Consensus 9 ~~l~i~~v~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 83 (264)
T PRK14243 9 TVLRTENLNVYY-GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD---- 83 (264)
T ss_pred eEEEEeeeEEEE-CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc----
Confidence 479999999999 45679999999999999999999999999999999999986 47999999987642000
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHhh
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGM 326 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~---~~~~~~~L~~ 326 (356)
.. ....+.+++|++|++. +++ .|+.+++.... +.. .+.+.++++.
T Consensus 84 -------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~ 134 (264)
T PRK14243 84 -------------------------VD-PVEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQ 134 (264)
T ss_pred -------------------------cC-hHHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHH
Confidence 00 0011346999999863 555 48888875321 111 2334556777
Q ss_pred cCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.. ....+++.+|||||||||+||++++
T Consensus 135 ~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 135 AALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred hCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 77642 1223467899999999999999974
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.8e-24 Score=193.77 Aligned_cols=141 Identities=30% Similarity=0.362 Sum_probs=103.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|+++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~------------ 68 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV------------ 68 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC------------
Confidence 46899999995446799999999999999999999999999999999999999999999998765210
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC----------
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG---------- 328 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~---------- 328 (356)
. ....+..++|++|++. +++ .|+.+++.... ......+...+..++
T Consensus 69 -------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 125 (236)
T cd03253 69 -------------------T-LDSLRRAIGVVPQDTV--LFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPD 125 (236)
T ss_pred -------------------C-HHHHHhhEEEECCCCh--hhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccc
Confidence 0 0001245899999973 554 68888875421 222233333333333
Q ss_pred -CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 -LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 -l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..... +++.+|||||||||+||++++
T Consensus 126 ~~~~~~~-~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 126 GYDTIVG-ERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred cccchhh-cCCCcCCHHHHHHHHHHHHHh
Confidence 333233 356899999999999999974
No 290
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.2e-24 Score=194.27 Aligned_cols=145 Identities=26% Similarity=0.266 Sum_probs=109.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i 252 (356)
++++++|+++.| ++..+++++||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 6 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 80 (259)
T PRK14260 6 PAIKVKDLSFYY-NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR---- 80 (259)
T ss_pred ceEEEEEEEEEE-CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc----
Confidence 368999999999 456799999999999999999999999999999999999985 4899999987652100
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CCH----HHHHHHH
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPY----EKSRRQL 324 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~~----~~~~~~L 324 (356)
.. ....+..++|++|++. +++ .|+.+++... .+ .+. ..+.+.+
T Consensus 81 -------------------------~~-~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l 131 (259)
T PRK14260 81 -------------------------IN-INRLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESAL 131 (259)
T ss_pred -------------------------cc-hHhhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 0011346999999873 565 7999887532 11 121 2355678
Q ss_pred hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+++.. ....+++.+|||||||||+||++++
T Consensus 132 ~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 132 KGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred HHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 8888742 1223467999999999999999974
No 291
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=2.4e-24 Score=205.09 Aligned_cols=144 Identities=27% Similarity=0.447 Sum_probs=119.7
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
+.++++++++.| ++..+.++|||+|.+||+.||+|.||||||||+++|+|+++|++|+|+++|+...+. +|
T Consensus 3 ~~l~~~~itK~f-~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~--------sP 73 (501)
T COG3845 3 PALEMRGITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK--------SP 73 (501)
T ss_pred ceEEEeccEEEc-CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccC--------CH
Confidence 568999999999 478899999999999999999999999999999999999999999999999876432 11
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC------CC----HHHHHHHHhhc
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN------LP----YEKSRRQLGMF 327 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~------~~----~~~~~~~L~~~ 327 (356)
+ ...+..||+|+|++ .+++..|+.||+..... .+ ..++.++.+++
T Consensus 74 ~-----------------------dA~~~GIGMVhQHF--~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y 128 (501)
T COG3845 74 R-----------------------DAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY 128 (501)
T ss_pred H-----------------------HHHHcCCcEEeecc--ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh
Confidence 1 11245799999997 58999999999864321 12 24567788999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
||+-+.+. ++.+||-||||||.|-++|.
T Consensus 129 Gl~vdp~~-~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 129 GLPVDPDA-KVADLSVGEQQRVEILKALY 156 (501)
T ss_pred CCCCCccc-eeecCCcchhHHHHHHHHHh
Confidence 99876665 78999999999999999873
No 292
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=8.3e-24 Score=192.92 Aligned_cols=144 Identities=22% Similarity=0.299 Sum_probs=103.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++|+++.|+ ++++++++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++|.++...
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~--------- 70 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL--------- 70 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccC---------
Confidence 478999999994 567999999999999999999999999999999999995 69999999998654200
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh------c-C---CC----HHHHHH
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL------F-N---LP----YEKSRR 322 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~------~-~---~~----~~~~~~ 322 (356)
.+ ....+..++|++|++. +++..+..++.... . . .. ...+.+
T Consensus 71 -----------------~~-----~~~~~~~i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
T PRK09580 71 -----------------SP-----EDRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEE 126 (248)
T ss_pred -----------------CH-----HHHhhcceEEEecCch--hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHH
Confidence 00 0001235899999863 44444443332110 0 0 11 123456
Q ss_pred HHhhcCCCCccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~-~LSGGqkqRvalA~~~l 356 (356)
.++.++++.....+++. .|||||||||+||++++
T Consensus 127 ~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred HHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 78889986433334554 79999999999999974
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.90 E-value=8.2e-24 Score=181.28 Aligned_cols=107 Identities=29% Similarity=0.415 Sum_probs=89.9
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.|++++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~------------------ 62 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE------------------ 62 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------------
Confidence 46899999995446799999999999999999999999999999999999999999998753
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 339 (356)
..+++|++|++. ++ ..|+.+++... ++.
T Consensus 63 -------------------------~~~i~~~~q~~~--~~-~~tv~~nl~~~------------------------~~~ 90 (166)
T cd03223 63 -------------------------GEDLLFLPQRPY--LP-LGTLREQLIYP------------------------WDD 90 (166)
T ss_pred -------------------------CceEEEECCCCc--cc-cccHHHHhhcc------------------------CCC
Confidence 136899999863 33 56888876321 247
Q ss_pred CCChHHHHHHHHHHHcC
Q psy2684 340 DLSGGQKARVALAELTL 356 (356)
Q Consensus 340 ~LSGGqkqRvalA~~~l 356 (356)
+||||||||++||++++
T Consensus 91 ~LS~G~~~rv~laral~ 107 (166)
T cd03223 91 VLSGGEQQRLAFARLLL 107 (166)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 89999999999999974
No 294
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.90 E-value=2.5e-24 Score=219.45 Aligned_cols=143 Identities=30% Similarity=0.373 Sum_probs=111.5
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|+++.|+++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~--------- 411 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT--------- 411 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC---------
Confidence 48999999999653 57999999999999999999999999999999999999999999999998763100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccc-
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAH- 334 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~- 334 (356)
....+..++|++|++. +| +.|+.+++.... ..+.+++++.++..++.+...
T Consensus 412 -----------------------~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 412 -----------------------LASLRNQVALVSQNVH--LF-NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred -----------------------HHHHHhhceEEccCce--ee-cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 0112356999999973 55 468999986532 256677888877776533211
Q ss_pred -----cCC----CCCCChHHHHHHHHHHHcC
Q psy2684 335 -----TIP----IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 -----~~~----~~~LSGGqkqRvalA~~~l 356 (356)
+.+ -..||||||||++|||+++
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 111 2569999999999999974
No 295
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.90 E-value=3.7e-24 Score=222.38 Aligned_cols=143 Identities=29% Similarity=0.384 Sum_probs=111.7
Q ss_pred cEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..-.
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~-------- 549 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-------- 549 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC--------
Confidence 5899999999964 357999999999999999999999999999999999999999999999998863100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
....+.+|+|++|++. +| +.|+.||+... .+.+.+++.+.++..++.+....
T Consensus 550 ------------------------~~~lr~~i~~v~Q~~~--lF-~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~ 602 (711)
T TIGR00958 550 ------------------------HHYLHRQVALVGQEPV--LF-SGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602 (711)
T ss_pred ------------------------HHHHHhhceEEecCcc--cc-ccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 0112357999999973 44 56899998644 23556777777777765432111
Q ss_pred ----------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ----------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ----------~~~~~LSGGqkqRvalA~~~l 356 (356)
..-..||||||||++|||+++
T Consensus 603 lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred CCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 122579999999999999974
No 296
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1e-23 Score=192.98 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=108.6
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|++.| ++|+|.++|.++...
T Consensus 4 ~~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~---- 78 (253)
T PRK14261 4 EIILSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS---- 78 (253)
T ss_pred cceEEEeeeEEEE-CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc----
Confidence 3579999999999 566799999999999999999999999999999999999763 489999998765310
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ 323 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~ 323 (356)
... ....+..++|++|++. +++ .|+.+++... .+. . ...+.++
T Consensus 79 -------------------------~~~-~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 129 (253)
T PRK14261 79 -------------------------GAD-VVALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKS 129 (253)
T ss_pred -------------------------ccc-hhhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHH
Confidence 000 0111346999999873 555 4898887532 121 1 1235567
Q ss_pred HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++.+++.+. ...+++..||||||||++||++++
T Consensus 130 l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 130 LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred HHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 788877431 123467999999999999999974
No 297
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1e-23 Score=193.87 Aligned_cols=144 Identities=24% Similarity=0.298 Sum_probs=108.3
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| ++..+|+++||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++....
T Consensus 7 ~l~~~nl~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~----- 80 (261)
T PRK14258 7 AIKVNNLSFYY-DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR----- 80 (261)
T ss_pred eEEEeeEEEEe-CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc-----
Confidence 68999999999 4557999999999999999999999999999999999999985 788888776542100
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L~ 325 (356)
.. ....+..++|++|++. +++ .|+.+++... .+. +. ..+.++++
T Consensus 81 ------------------------~~-~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 132 (261)
T PRK14258 81 ------------------------VN-LNRLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALK 132 (261)
T ss_pred ------------------------cc-hHHhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 00 0011346999999863 666 7898887532 121 21 23566788
Q ss_pred hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++... ...+++.+|||||+|||+||++++
T Consensus 133 ~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 133 DADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred HcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 8887431 234577999999999999999974
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=4.3e-24 Score=191.03 Aligned_cols=115 Identities=29% Similarity=0.413 Sum_probs=95.3
Q ss_pred CcEEEecceeeeCCC--------ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684 178 PVLGLHDVTFGYPGG--------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME 249 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~--------~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~ 249 (356)
++++++|+++.|+-+ ..++++|||+|++||+++|||+|||||||+-++|.|+++|++|+|+|+|.++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh---
Confidence 578999999999532 268999999999999999999999999999999999999999999999876420
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 329 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l 329 (356)
+. . ....+.+.++|+.+|+
T Consensus 80 -------------------------------------------------~~-----~-------~~~~~~v~elL~~Vgl 98 (268)
T COG4608 80 -------------------------------------------------LS-----K-------EERRERVLELLEKVGL 98 (268)
T ss_pred -------------------------------------------------cc-----h-------hHHHHHHHHHHHHhCC
Confidence 00 0 0112457789999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
......+.+++|||||+||++|||++.
T Consensus 99 ~~~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 99 PEEFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred CHHHhhcCCcccCchhhhhHHHHHHHh
Confidence 875555677999999999999999973
No 299
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.6e-22 Score=198.38 Aligned_cols=159 Identities=23% Similarity=0.287 Sum_probs=114.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
++|...+|||||.||+.||..+-+.= =+++||||+-+|=+.-.+.|.+.|++ .|-|||+|+||-+.+. .||+|+
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iI 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHII 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEE
Confidence 57899999999999999999998774 38999999999998887777766654 5789999999998886 599999
Q ss_pred EEeC------CeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HLDM------KKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l~~------g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
.|-. |.|+ |.|+++++++... .+.-.| + ....
T Consensus 554 DiGPgAG~~GGeIv-~~Gtp~~i~~~~~----SlTG~Y---------------------------L---------sg~~- 591 (935)
T COG0178 554 DIGPGAGEHGGEIV-AEGTPEELLANPE----SLTGQY---------------------------L---------SGKK- 591 (935)
T ss_pred eeCCCCCcCCCEEE-EccCHHHHHhCCc----chhhHh---------------------------h---------cCCc-
Confidence 9953 4444 6898876654210 010000 0 0000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCC-CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhh
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYL-PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~ 224 (356)
....|..+.. ....|++++.+. + =|+|++.+|+-|-+++|.|-||||||||++
T Consensus 592 ---------------~i~vP~~rr~~~~~~L~l~gA~~---n---NLkni~v~iPLg~~t~VTGVSGSGKSTLIn 645 (935)
T COG0178 592 ---------------TIEVPKKRRAPNGKWLELKGARR---N---NLKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 (935)
T ss_pred ---------------ccCCcccccCCCCCeEEEecccc---c---CcccceeecccccEEEEEecCCCCHHHhHH
Confidence 0001111111 122688887763 1 389999999999999999999999999994
No 300
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=4.9e-24 Score=193.29 Aligned_cols=141 Identities=30% Similarity=0.390 Sum_probs=101.8
Q ss_pred EEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++|+++.|++ +.++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL---------- 70 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc----------
Confidence 468999999953 24699999999999999999999999999999999999999999999998764200
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhc---------
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMF--------- 327 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~--------- 327 (356)
... ..+..++|++|++. +++ .|+.+++.... ......+...+..+
T Consensus 71 ------------------~~~----~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (238)
T cd03249 71 ------------------NLR----WLRSQIGLVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125 (238)
T ss_pred ------------------CHH----HHHhhEEEECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhh
Confidence 000 01235999999863 454 58888875321 12222233333322
Q ss_pred --CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 --GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 --~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++..... +++.+|||||||||+||++++
T Consensus 126 ~~~~~~~~~-~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 126 PDGYDTLVG-ERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred ccccceeec-cCCccCCHHHHHHHHHHHHHh
Confidence 3333333 356899999999999999874
No 301
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=9.3e-24 Score=183.71 Aligned_cols=118 Identities=25% Similarity=0.313 Sum_probs=94.6
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++++|+++.| +++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-------- 68 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS-------- 68 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC--------
Confidence 3579999999988 899999999999999999999999999999999999999999999987653100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
+ ....+.+++|++|++. ..+++..|+.+++....
T Consensus 69 ------------------~-----~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------- 103 (182)
T cd03215 69 ------------------P-----RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS---------------------- 103 (182)
T ss_pred ------------------H-----HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh----------------------
Confidence 0 0011346999999863 24667788888763210
Q ss_pred CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA~~~l 356 (356)
.|||||||||+||++++
T Consensus 104 ----~LS~G~~qrl~la~al~ 120 (182)
T cd03215 104 ----LLSGGNQQKVVLARWLA 120 (182)
T ss_pred ----hcCHHHHHHHHHHHHHc
Confidence 09999999999999974
No 302
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.90 E-value=4.2e-24 Score=221.85 Aligned_cols=143 Identities=32% Similarity=0.432 Sum_probs=112.3
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|++|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~--------- 533 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID--------- 533 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC---------
Confidence 48999999999643 56999999999999999999999999999999999999999999999998864110
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcccc-
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT- 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~- 335 (356)
....+..++|++|++. +|. .|+.|++.... ..+.+++.+.++..++.+....
T Consensus 534 -----------------------~~~lr~~i~~v~Q~~~--lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 587 (694)
T TIGR03375 534 -----------------------PADLRRNIGYVPQDPR--LFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRH 587 (694)
T ss_pred -----------------------HHHHHhccEEECCChh--hhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 0012457999999973 554 59999986543 3567777777777765432211
Q ss_pred ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ---------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ---------~~~~~LSGGqkqRvalA~~~l 356 (356)
.....||||||||++|||+++
T Consensus 588 p~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 588 PDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred cccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 123579999999999999975
No 303
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.6e-24 Score=193.57 Aligned_cols=143 Identities=24% Similarity=0.307 Sum_probs=106.8
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCeeee
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ial 254 (356)
-+++|+++.| +++.+++++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 6 ~~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~------ 78 (251)
T PRK14244 6 ASVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD------ 78 (251)
T ss_pred EEeeeEEEEE-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc------
Confidence 3689999999 45679999999999999999999999999999999999986 47999999987642100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHh
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLG 325 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~----~~~~~~~L~ 325 (356)
.. ....+..++|++|++. +++. ++.+++... .+. . ...+.++++
T Consensus 79 -----------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (251)
T PRK14244 79 -----------------------TN-VVLLRAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLT 131 (251)
T ss_pred -----------------------cc-hHHHhhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 00 0011346999999863 5554 888876432 121 1 123567789
Q ss_pred hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|+.+. ...+++..|||||||||+||++++
T Consensus 132 ~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred HcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 9998642 223467899999999999999974
No 304
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=193.05 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=111.7
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.-.. -|
T Consensus 8 ~~~i~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~---------~g 77 (257)
T PRK14246 8 EDVFNISRLYLYI-NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLY---------FG 77 (257)
T ss_pred hhheeeeeEEEec-CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEE---------CC
Confidence 4689999999999 5678999999999999999999999999999999999999999999888763210 01
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHhhcC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFG 328 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L~~~~ 328 (356)
.+- .... ....+..++|++|++. +++..|+.+++... .+. .. ..+.++++.++
T Consensus 78 ~~~----------------~~~~-~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (257)
T PRK14246 78 KDI----------------FQID-AIKLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVG 138 (257)
T ss_pred ccc----------------ccCC-HHHHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 100 0000 0011346999999873 67778998887532 121 22 23567788899
Q ss_pred CCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.. .....++..||||||||++||++++
T Consensus 139 l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred CCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 853 1223467899999999999999974
No 305
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.5e-24 Score=184.05 Aligned_cols=116 Identities=38% Similarity=0.507 Sum_probs=92.7
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
++++|+++.| +++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 i~~~~l~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----------- 68 (178)
T cd03229 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE----------- 68 (178)
T ss_pred CEEEEEEEEE-CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-----------
Confidence 4689999999 4567999999999999999999999999999999999999999999999987652100
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 339 (356)
+ . ....+..++|++|++. +++..|+.+++...
T Consensus 69 ---------------~---~-~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~--------------------------- 100 (178)
T cd03229 69 ---------------D---E-LPPLRRRIGMVFQDFA--LFPHLTVLENIALG--------------------------- 100 (178)
T ss_pred ---------------h---h-HHHHhhcEEEEecCCc--cCCCCCHHHheeec---------------------------
Confidence 0 0 0011346999999873 56677777764210
Q ss_pred CCChHHHHHHHHHHHcC
Q psy2684 340 DLSGGQKARVALAELTL 356 (356)
Q Consensus 340 ~LSGGqkqRvalA~~~l 356 (356)
||||||||++||++++
T Consensus 101 -lS~G~~qr~~la~al~ 116 (178)
T cd03229 101 -LSGGQQQRVALARALA 116 (178)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 9999999999999974
No 306
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.8e-23 Score=182.65 Aligned_cols=92 Identities=35% Similarity=0.466 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+++||||+++|++||||++.+|++|++||||++|||.+...+.+++++ ++.|+|+||||++.+..+|||+++
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAV 218 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEE
Confidence 3578999999999999999999999999999999999999987665555443 578999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFK 94 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~ 94 (356)
|.+|++.. .|+.++..
T Consensus 219 L~~gkv~~-~Gt~~el~ 234 (263)
T COG1127 219 LADGKVIA-EGTPEELL 234 (263)
T ss_pred EeCCEEEE-eCCHHHHH
Confidence 99999985 58776554
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=213.73 Aligned_cols=93 Identities=37% Similarity=0.583 Sum_probs=90.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+|||||||||+||++|+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|++|+
T Consensus 425 ~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~ 504 (638)
T PRK10636 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGK 504 (638)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecCCHHHHHH
Q psy2684 83 LFYYKGNFTLFKK 95 (356)
Q Consensus 83 ~~~~~g~~~~~~~ 95 (356)
++.|.|+|++|.+
T Consensus 505 i~~~~g~~~~~~~ 517 (638)
T PRK10636 505 VEPFDGDLEDYQQ 517 (638)
T ss_pred EEEcCCCHHHHHH
Confidence 9989999999954
No 308
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.6e-23 Score=188.66 Aligned_cols=93 Identities=31% Similarity=0.462 Sum_probs=84.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~----~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
-++++.+|||||+|||+|||||+.+|++||||||++.||..-+ .||.++..+++.|+|+||||.+++.++||||++
T Consensus 131 a~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv 210 (345)
T COG1118 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV 210 (345)
T ss_pred hhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE
Confidence 4789999999999999999999999999999999999999875 566667777899999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFK 94 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~ 94 (356)
|++|+|...+.+.+.|.
T Consensus 211 l~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 211 LNQGRIEQVGPPDEVYD 227 (345)
T ss_pred ecCCeeeeeCCHHHHhc
Confidence 99999998766666554
No 309
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=2.1e-23 Score=213.98 Aligned_cols=93 Identities=35% Similarity=0.568 Sum_probs=89.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEe-CC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLD-MK 81 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~-~g 81 (356)
++++.+||||||||++||++|+.+|+||||||||||||+.++++|.++++++++|||+||||++++..+||+|++|+ +|
T Consensus 435 ~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g 514 (635)
T PRK11147 435 MTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNG 514 (635)
T ss_pred hChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred eEeEecCCHHHHHH
Q psy2684 82 KLFYYKGNFTLFKK 95 (356)
Q Consensus 82 ~~~~~~g~~~~~~~ 95 (356)
++..|.|+|++|.+
T Consensus 515 ~i~~~~g~y~~y~~ 528 (635)
T PRK11147 515 KIGRYVGGYHDARQ 528 (635)
T ss_pred eEEEccCCHHHHHH
Confidence 99999999999964
No 310
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=191.81 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=110.8
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i 252 (356)
+.+.++++++.| ++..+++++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 7 ~~~~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~----- 80 (261)
T PRK14263 7 IVMDCKLDKIFY-GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK----- 80 (261)
T ss_pred ceEEEEeEEEEe-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc-----
Confidence 568999999999 567899999999999999999999999999999999999987 799999998765200
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHhh
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGM 326 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~---~~~~~~~L~~ 326 (356)
.. . ....+..++|++|++. ++ ..|+.+++.... ... ...+.++++.
T Consensus 81 ---------------------~~---~-~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~ 132 (261)
T PRK14263 81 ---------------------GV---D-PVVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQG 132 (261)
T ss_pred ---------------------cc---c-hHhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 00 0 0011346999999973 45 588988875321 111 2356778999
Q ss_pred cCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 FGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+. ....++.+|||||+||++|||+++
T Consensus 133 ~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 133 AALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred cCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 998542 123467899999999999999974
No 311
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=7.5e-24 Score=216.10 Aligned_cols=142 Identities=30% Similarity=0.438 Sum_probs=110.8
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++|+++.|++++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~---------- 403 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT---------- 403 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC----------
Confidence 5899999999965467999999999999999999999999999999999999999999999998763100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCc-----
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSY----- 332 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~----- 332 (356)
....+.+|+|++|++. +| +.|+.+++... .+.++++++..++.+++.+.
T Consensus 404 ----------------------~~~~r~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp 458 (588)
T PRK13657 404 ----------------------RASLRRNIAVVFQDAG--LF-NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKP 458 (588)
T ss_pred ----------------------HHHHHhheEEEecCcc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCc
Confidence 0112357999999973 55 46899998654 24556677777666664321
Q ss_pred ------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 ------AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ------~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ....||||||||++|||+++
T Consensus 459 ~gldt~i~~-~g~~LSgGq~QRialARall 487 (588)
T PRK13657 459 DGYDTVVGE-RGRQLSGGERQRLAIARALL 487 (588)
T ss_pred ccccchhcC-CCCCCCHHHHHHHHHHHHHh
Confidence 111 22469999999999999975
No 312
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-24 Score=205.48 Aligned_cols=143 Identities=34% Similarity=0.479 Sum_probs=115.8
Q ss_pred cEEEecceeeeCCCc-cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~-~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.++++|++|.|++.. ++|+|+||++.+||+++|+|+|||||||++.++.|.+.|++|+|.++|.++..-+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~--------- 406 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD--------- 406 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC---------
Confidence 799999999997665 6999999999999999999999999999999999999999999999997763110
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccccC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
+ ...+..++++.|.++ +| +.|+.+|+.-. .+.+.++.++.|+.+|+.+.....
T Consensus 407 -------------------~----~~~~e~i~vl~Qr~h--lF-~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 407 -------------------E----QALRETISVLTQRVH--LF-SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred -------------------h----hhHHHHHhhhccchH--HH-HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence 0 001345788999874 55 45788887543 456788899999999987654433
Q ss_pred C----------CCCCChHHHHHHHHHHHcC
Q psy2684 337 P----------IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~----------~~~LSGGqkqRvalA~~~l 356 (356)
| -..|||||+||++|||++|
T Consensus 461 p~gl~t~lge~G~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 461 PDGLNTWLGEGGRRLSGGERRRLALARALL 490 (573)
T ss_pred hhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence 1 3579999999999999985
No 313
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.89 E-value=2.5e-23 Score=187.02 Aligned_cols=88 Identities=35% Similarity=0.460 Sum_probs=80.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.+|++.+|||||||||.||+||+++|++|||||||++||...+..+.++++++ +.|||+|.||++++.++||+++.
T Consensus 132 a~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~ 211 (258)
T COG1120 132 ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL 211 (258)
T ss_pred hcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 47899999999999999999999999999999999999999988877777654 58999999999999999999999
Q ss_pred EeCCeEeEecCC
Q psy2684 78 LDMKKLFYYKGN 89 (356)
Q Consensus 78 l~~g~~~~~~g~ 89 (356)
|.+|+++..+.+
T Consensus 212 lk~G~i~a~G~p 223 (258)
T COG1120 212 LKDGKIVAQGTP 223 (258)
T ss_pred EECCeEEeecCc
Confidence 999999976554
No 314
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=2e-23 Score=183.49 Aligned_cols=118 Identities=35% Similarity=0.423 Sum_probs=96.4
Q ss_pred cEEEecceeeeCC-----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCe
Q psy2684 179 VLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 179 ~l~~~~l~~~~~~-----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++|+++.|++ +.++++++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----- 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch-----
Confidence 4789999999954 267999999999999999999999999999999999999 9999999999876520
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCC
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 331 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~ 331 (356)
...+.+++|++|++ .+++..|+.+++.... .
T Consensus 78 ------------------------------~~~~~~i~~~~q~~--~~~~~~t~~~~i~~~~------------~----- 108 (194)
T cd03213 78 ------------------------------RSFRKIIGYVPQDD--ILHPTLTVRETLMFAA------------K----- 108 (194)
T ss_pred ------------------------------HhhhheEEEccCcc--cCCCCCcHHHHHHHHH------------H-----
Confidence 01134699999986 4677788888764210 0
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...|||||+|||+||++++
T Consensus 109 ------~~~LS~G~~qrv~laral~ 127 (194)
T cd03213 109 ------LRGLSGGERKRVSIALELV 127 (194)
T ss_pred ------hccCCHHHHHHHHHHHHHH
Confidence 0179999999999999974
No 315
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=2.2e-23 Score=209.66 Aligned_cols=167 Identities=24% Similarity=0.369 Sum_probs=112.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++.... .++++-+
T Consensus 1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~-----~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE-----KCGYVER 74 (520)
T ss_pred CEEEEEEEEE-CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc-----ccccccc
Confidence 4789999999 5667999999999999999999999999999999999997 799999999742110 0111000
Q ss_pred ---CC-----CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHH
Q psy2684 258 ---NG-----IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRR 322 (356)
Q Consensus 258 ---nG-----~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~ 322 (356)
+| .|++.....+ ....... ......+..++|++|++. .+++..|+.+++... .+.+. .++.+
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEV-DFWNLSD-KLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccch-hhhccCH-HHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 00 0221000000 0000000 000011346999999742 467778998887532 22322 34667
Q ss_pred HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|+.+... +++.+|||||||||+||++++
T Consensus 152 ~l~~~gl~~~~~-~~~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 152 LIEMVQLSHRIT-HIARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred HHHHcCChhhhh-cCcccCCHHHHHHHHHHHHHh
Confidence 899999987655 467999999999999999974
No 316
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.4e-23 Score=195.81 Aligned_cols=147 Identities=23% Similarity=0.264 Sum_probs=110.4
Q ss_pred CCCcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcC
Q psy2684 176 PPPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDME 249 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~ 249 (356)
...+++++|+++.|.+ ...+|+++||+|.+|++++|+|+||||||||+++|+|+.. |++|+|.++|.++....
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~- 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK- 155 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-
Confidence 3458999999999953 3469999999999999999999999999999999999986 57999999998763100
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--c-CCCHH-----HHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--F-NLPYE-----KSR 321 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~-~~~~~-----~~~ 321 (356)
.. ....+.+++|++|++. ++ ..|+.+++... . +.... .+.
T Consensus 156 ----------------------------~~-~~~lr~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~ 203 (329)
T PRK14257 156 ----------------------------IS-SLELRTRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVE 203 (329)
T ss_pred ----------------------------cc-hHhhhccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHH
Confidence 00 0012357999999974 44 47999988632 1 22222 245
Q ss_pred HHHhhcCCCC----ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 322 RQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 322 ~~L~~~~l~~----~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++.+++.. ... .++.+|||||||||+|||+++
T Consensus 204 ~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~ 241 (329)
T PRK14257 204 KSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIA 241 (329)
T ss_pred HHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHH
Confidence 6788887742 233 467899999999999999974
No 317
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.89 E-value=8.1e-24 Score=215.26 Aligned_cols=143 Identities=29% Similarity=0.390 Sum_probs=112.0
Q ss_pred cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|++++|++ ++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~--------- 400 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT--------- 400 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC---------
Confidence 4899999999964 356999999999999999999999999999999999999999999999998763100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCcccc
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
....+..++|++|++. +| +.|+.+++.... ..+.+++.+.++.+|+.+...+
T Consensus 401 -----------------------~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~ 454 (571)
T TIGR02203 401 -----------------------LASLRRQVALVSQDVV--LF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDK 454 (571)
T ss_pred -----------------------HHHHHhhceEEccCcc--cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 0012356999999973 44 568999986442 4667778888877776432111
Q ss_pred ------C----CCCCCChHHHHHHHHHHHcC
Q psy2684 336 ------I----PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ------~----~~~~LSGGqkqRvalA~~~l 356 (356)
. .-..||||||||++|||+++
T Consensus 455 lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 455 LPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred CcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 1 12469999999999999974
No 318
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.89 E-value=2.7e-24 Score=186.74 Aligned_cols=113 Identities=34% Similarity=0.617 Sum_probs=90.0
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~ 260 (356)
+++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~------------ 67 (180)
T cd03214 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS------------ 67 (180)
T ss_pred CeeEEEEEE-CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC------------
Confidence 368999999 4567999999999999999999999999999999999999999999999987652100
Q ss_pred chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCCC
Q psy2684 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 340 (356)
Q Consensus 261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~ 340 (356)
. ...+..++|++| +++.+|+..... +++.+
T Consensus 68 -------------------~-~~~~~~i~~~~q-----------------------------~l~~~gl~~~~~-~~~~~ 97 (180)
T cd03214 68 -------------------P-KELARKIAYVPQ-----------------------------ALELLGLAHLAD-RPFNE 97 (180)
T ss_pred -------------------H-HHHHHHHhHHHH-----------------------------HHHHcCCHhHhc-CCccc
Confidence 0 000124666666 566677765544 46799
Q ss_pred CChHHHHHHHHHHHcC
Q psy2684 341 LSGGQKARVALAELTL 356 (356)
Q Consensus 341 LSGGqkqRvalA~~~l 356 (356)
||||||||++||++++
T Consensus 98 LS~G~~qrl~laral~ 113 (180)
T cd03214 98 LSGGERQRVLLARALA 113 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999874
No 319
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.89 E-value=8.1e-24 Score=183.43 Aligned_cols=113 Identities=35% Similarity=0.603 Sum_probs=91.0
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~------------ 68 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD------------ 68 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHH------------
Confidence 4689999999543 369999999999999999999999999999999999999999999998865420
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
. ....+..++|++|++. +++ .|+.+++ +
T Consensus 69 ------~---------------~~~~~~~i~~~~q~~~--~~~-~tv~~~i----------------------------~ 96 (178)
T cd03247 69 ------L---------------EKALSSLISVLNQRPY--LFD-TTLRNNL----------------------------G 96 (178)
T ss_pred ------H---------------HHHHHhhEEEEccCCe--eec-ccHHHhh----------------------------c
Confidence 0 0001246899999863 443 5666653 4
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
..|||||+||++||++++
T Consensus 97 ~~LS~G~~qrv~laral~ 114 (178)
T cd03247 97 RRFSGGERQRLALARILL 114 (178)
T ss_pred ccCCHHHHHHHHHHHHHh
Confidence 789999999999999974
No 320
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=3.3e-23 Score=186.93 Aligned_cols=121 Identities=31% Similarity=0.378 Sum_probs=97.0
Q ss_pred cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----------------------------- 51 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE----------------------------- 51 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-----------------------------
Confidence 578999999999999999999999999999999999999999999876420
Q ss_pred CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----CCCH----HHHHHHHhhcCCCCccccCCCCCCChHHH
Q psy2684 276 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQK 346 (356)
Q Consensus 276 ~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqk 346 (356)
.....+|++|++ .+++..|+.+++.... .... ..+.++++.+|+..... +++.+||||||
T Consensus 52 --------~~~~~~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~ 120 (230)
T TIGR01184 52 --------PGPDRMVVFQNY--SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMK 120 (230)
T ss_pred --------CChhheEEecCc--ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHH
Confidence 001247999986 4777889999875421 2222 23667899999986554 46799999999
Q ss_pred HHHHHHHHcC
Q psy2684 347 ARVALAELTL 356 (356)
Q Consensus 347 qRvalA~~~l 356 (356)
|||+||++++
T Consensus 121 qrv~la~al~ 130 (230)
T TIGR01184 121 QRVAIARALS 130 (230)
T ss_pred HHHHHHHHHH
Confidence 9999999974
No 321
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=1.5e-23 Score=192.31 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=104.1
Q ss_pred CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
...++++|+++.|++. ..+++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|+++|.++....
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~------- 89 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP------- 89 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC-------
Confidence 3468999999999532 46999999999999999999999999999999999999999999999987652100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHH---------Hhh
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---------LGM 326 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~---------L~~ 326 (356)
....+..++|++|++. +++ .|+.+++..........+.+. ++.
T Consensus 90 -------------------------~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (257)
T cd03288 90 -------------------------LHTLRSRLSIILQDPI--LFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKS 141 (257)
T ss_pred -------------------------HHHHhhhEEEECCCCc--ccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhh
Confidence 0011346899999873 554 477776532111112223333 333
Q ss_pred c--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 F--GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+ ++...... ++..|||||+||++||++++
T Consensus 142 ~~~~l~~~~~~-~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 142 LPGGLDAVVTE-GGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred cccccCcEecc-CCCcCCHHHHHHHHHHHHHh
Confidence 3 44433333 56899999999999999974
No 322
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.3e-23 Score=190.12 Aligned_cols=147 Identities=26% Similarity=0.315 Sum_probs=108.4
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ 251 (356)
.++++++|+++.| +++.+|+++||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 14 ~~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~---- 88 (265)
T PRK14252 14 QQKSEVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL---- 88 (265)
T ss_pred CceEEEEEEEEEE-CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc----
Confidence 4579999999999 456799999999999999999999999999999999999985 799999987553210
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCccee-EeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGEL-RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRR 322 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~-~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~ 322 (356)
+ ... ....+..++|++|++. +++. |+.+++... .+.. .+.+.+
T Consensus 89 ----~---------------------~~~~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~ 140 (265)
T PRK14252 89 ----S---------------------PEVDPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEERVEN 140 (265)
T ss_pred ----c---------------------cccCHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHHHHH
Confidence 0 000 0012346999999863 5554 888887532 1221 234556
Q ss_pred HHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+++.. ....+++.+|||||+|||+||++++
T Consensus 141 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 177 (265)
T PRK14252 141 ALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALA 177 (265)
T ss_pred HHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 777777642 1223467899999999999999874
No 323
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=1.7e-23 Score=211.47 Aligned_cols=143 Identities=32% Similarity=0.448 Sum_probs=108.6
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|+++ +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~--------- 385 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQW--------- 385 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhC---------
Confidence 358999999999643 5799999999999999999999999999999999999999999999998876310
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhh---------
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGM--------- 326 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~--------- 326 (356)
. ....+..++|++|++. +++ .|+.+++.... ..+.+++.+.++.
T Consensus 386 -----------------~------~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 439 (544)
T TIGR01842 386 -----------------D------RETFGKHIGYLPQDVE--LFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILR 439 (544)
T ss_pred -----------------C------HHHHhhheEEecCCcc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence 0 0012357999999973 565 48999986332 2445555444443
Q ss_pred c--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 327 F--GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+ |+...... ....||||||||++|||+++
T Consensus 440 l~~gl~t~~~~-~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 440 LPDGYDTVIGP-GGATLSGGQRQRIALARALY 470 (544)
T ss_pred CccccccccCC-CcCCCCHHHHHHHHHHHHHh
Confidence 3 33333333 35789999999999999975
No 324
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.89 E-value=1.6e-23 Score=180.78 Aligned_cols=111 Identities=33% Similarity=0.596 Sum_probs=89.9
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++. ..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW----------- 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC-----------
Confidence 4689999999532 4699999999999999999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
. ....+.+++|++|++. +++ .|+.+++
T Consensus 70 --------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~~~l----------------------------- 96 (173)
T cd03246 70 --------------------D-PNELGDHVGYLPQDDE--LFS-GSIAENI----------------------------- 96 (173)
T ss_pred --------------------C-HHHHHhheEEECCCCc--ccc-CcHHHHC-----------------------------
Confidence 0 0001346899999873 554 3777653
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
||||||||++||++++
T Consensus 97 --LS~G~~qrv~la~al~ 112 (173)
T cd03246 97 --LSGGQRQRLGLARALY 112 (173)
T ss_pred --cCHHHHHHHHHHHHHh
Confidence 9999999999999974
No 325
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.89 E-value=3.1e-23 Score=187.14 Aligned_cols=128 Identities=27% Similarity=0.253 Sum_probs=98.4
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc----CCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHh
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p----~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~ 270 (356)
+++++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~------------------------ 56 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP------------------------ 56 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh------------------------
Confidence 47899999999999999999999999999999999999 89999999876520
Q ss_pred CCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC--ccccCCCCCC
Q psy2684 271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDL 341 (356)
Q Consensus 271 g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~L 341 (356)
. ...+..++|++|++...+++..|+.+++... .+.. ...+.++++.+++.. ....+++.+|
T Consensus 57 ---------~-~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~L 126 (230)
T TIGR02770 57 ---------L-SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQL 126 (230)
T ss_pred ---------h-hhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhc
Confidence 0 0112469999999743456677887765321 1211 234678899999973 2223477999
Q ss_pred ChHHHHHHHHHHHcC
Q psy2684 342 SGGQKARVALAELTL 356 (356)
Q Consensus 342 SGGqkqRvalA~~~l 356 (356)
||||||||+||++++
T Consensus 127 S~G~~qrv~laral~ 141 (230)
T TIGR02770 127 SGGMLQRVMIALALL 141 (230)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999974
No 326
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=3.8e-23 Score=181.71 Aligned_cols=89 Identities=30% Similarity=0.427 Sum_probs=81.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.+|++++|||||+|||-+||||+.+|++||+|||++.|||.++..|.+.+ ++++.|||+||||++++...+|||++
T Consensus 129 ~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 129 ADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred hhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 47999999999999999999999999999999999999999987765544 45789999999999999999999999
Q ss_pred EeCCeEeEecCCH
Q psy2684 78 LDMKKLFYYKGNF 90 (356)
Q Consensus 78 l~~g~~~~~~g~~ 90 (356)
|+.|+++.|+.+-
T Consensus 209 m~~G~i~Q~~~P~ 221 (309)
T COG1125 209 MDAGEIVQYDTPD 221 (309)
T ss_pred ecCCeEEEeCCHH
Confidence 9999999986543
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.89 E-value=1.6e-23 Score=211.78 Aligned_cols=140 Identities=24% Similarity=0.236 Sum_probs=106.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++|++++|+++.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----------- 390 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE----------- 390 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC-----------
Confidence 589999999996555799999999999999999999999999999999999999999999999876310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--C
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT--I 336 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~--~ 336 (356)
. ....+.+++|++|++. +++ .|+.++ ....+.+++.+.++.+++...... .
T Consensus 391 -----------------~----~~~~~~~i~~v~q~~~--lf~-~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~~~ 443 (547)
T PRK10522 391 -----------------Q----PEDYRKLFSAVFTDFH--LFD-QLLGPE---GKPANPALVEKWLERLKMAHKLELEDG 443 (547)
T ss_pred -----------------C----HHHHhhheEEEecChh--HHH-Hhhccc---cCchHHHHHHHHHHHcCCchhhhcccc
Confidence 0 0011347999999973 443 234443 112345567788888888654321 0
Q ss_pred C--CCCCChHHHHHHHHHHHcC
Q psy2684 337 P--IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~--~~~LSGGqkqRvalA~~~l 356 (356)
. -..||||||||++|||+++
T Consensus 444 ~~~G~~LSgGq~qRl~lARal~ 465 (547)
T PRK10522 444 RISNLKLSKGQKKRLALLLALA 465 (547)
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 0 2489999999999999974
No 328
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.89 E-value=2.9e-23 Score=183.37 Aligned_cols=118 Identities=28% Similarity=0.378 Sum_probs=92.2
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++|+++.|+ +..+++++||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~---------- 69 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL---------- 69 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcC----------
Confidence 46899999994 56799999999999999999999999999999999999 589999999998765310
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 337 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~ 337 (356)
......+..++|++|++. +++..++.+++ ...
T Consensus 70 ---------------------~~~~~~~~~i~~v~q~~~--~~~~~~~~~~l-------------------------~~~ 101 (200)
T cd03217 70 ---------------------PPEERARLGIFLAFQYPP--EIPGVKNADFL-------------------------RYV 101 (200)
T ss_pred ---------------------CHHHHhhCcEEEeecChh--hccCccHHHHH-------------------------hhc
Confidence 000001235999999863 55566655543 112
Q ss_pred CCCCChHHHHHHHHHHHcC
Q psy2684 338 IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 338 ~~~LSGGqkqRvalA~~~l 356 (356)
..+|||||+||++||++++
T Consensus 102 ~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred cccCCHHHHHHHHHHHHHh
Confidence 3689999999999999974
No 329
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=169.78 Aligned_cols=140 Identities=33% Similarity=0.464 Sum_probs=114.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~~~~~~~~ialv 255 (356)
++.++|++.+. ++..+|.++||+|.+||++.|+||||||||||+.-+.|.+.++ +|++.++++++...
T Consensus 2 ~l~l~nvsl~l-~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l-------- 72 (213)
T COG4136 2 MLCLKNVSLRL-PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML-------- 72 (213)
T ss_pred ceeeeeeeecC-CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc--------
Confidence 57899999888 5678999999999999999999999999999999999999874 79999988776311
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHhhcCC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGL 329 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~----~~~~~~~L~~~~l 329 (356)
...++++|++||++ .+|+..++.+++.... .+. ...+...|++.|+
T Consensus 73 --------------------------Pa~qRq~GiLFQD~--lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL 124 (213)
T COG4136 73 --------------------------PAAQRQIGILFQDA--LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGL 124 (213)
T ss_pred --------------------------chhhhheeeeeccc--ccccccccccceEEecCcccccHHHHhhHHHHHHHhcc
Confidence 11245799999996 5899999999874321 111 1235567999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
....+.. +.+||||||.||+|-|+++
T Consensus 125 ~g~f~~d-P~tlSGGQrARvaL~R~Ll 150 (213)
T COG4136 125 DGAFHQD-PATLSGGQRARVALLRALL 150 (213)
T ss_pred chhhhcC-hhhcCcchHHHHHHHHHHH
Confidence 9988764 4899999999999999974
No 330
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.5e-23 Score=189.06 Aligned_cols=144 Identities=23% Similarity=0.296 Sum_probs=107.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ia 253 (356)
+++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+.. |++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~----- 76 (250)
T PRK14266 3 RIEVENLNTYF-DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA----- 76 (250)
T ss_pred EEEEEeEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc-----
Confidence 47899999999 45679999999999999999999999999999999999874 48999999987653100
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHh
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLG 325 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L~ 325 (356)
.. ....+.+++|++|++. +++. |+.+++... .+. .. ..+.++++
T Consensus 77 ------------------------~~-~~~~~~~i~~~~q~~~--~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~ 128 (250)
T PRK14266 77 ------------------------VD-VVELRKKVGMVFQKPN--PFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLK 128 (250)
T ss_pred ------------------------cc-HHHHhhheEEEecCCc--cCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHH
Confidence 00 0011346999999863 5554 888887532 111 11 23556788
Q ss_pred hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++... ..++++.+||||||||++||++++
T Consensus 129 ~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 129 AAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred HcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 8887431 123577999999999999999974
No 331
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.9e-23 Score=176.73 Aligned_cols=143 Identities=29% Similarity=0.430 Sum_probs=117.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee-eccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK-VNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g-~~~~~~~~~~ialvG 256 (356)
++++++|++++| ++-.+++++||+|.+||.-+|||||||||||++.+|+|..+|+.|+++|+| .++...+..+|
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~I---- 78 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI---- 78 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHH----
Confidence 579999999999 678899999999999999999999999999999999999999999999998 66642222121
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC------------C---CHHHHH
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN------------L---PYEKSR 321 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~------------~---~~~~~~ 321 (356)
.+..||.=||.| ..|.+.|+.||+.-..+ . ...++.
T Consensus 79 ---------------------------Ar~GIGRKFQ~P--tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~rid 129 (249)
T COG4674 79 ---------------------------ARAGIGRKFQKP--TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID 129 (249)
T ss_pred ---------------------------HHhccCccccCC--eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHH
Confidence 134577788987 48899999999853211 1 124578
Q ss_pred HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+.|+..|+.+..+. ++..||-||||++.|+.++
T Consensus 130 e~La~igL~~~~~~-~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 130 ELLATIGLGDERDR-LAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred HHHHHcccchhhhh-hhhhhccchhhhhhhheee
Confidence 89999999987765 7899999999999999875
No 332
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=5.2e-23 Score=227.55 Aligned_cols=144 Identities=24% Similarity=0.343 Sum_probs=117.8
Q ss_pred CCcEEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.+.++++|+++.|+ +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~-------- 997 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN-------- 997 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch--------
Confidence 45799999999995 356799999999999999999999999999999999999999999999998775210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~ 328 (356)
....+..+||++|++ .+++.+|+.|++... .+.+ .+++.++|+.+|
T Consensus 998 -------------------------~~~~r~~IG~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vg 1050 (2272)
T TIGR01257 998 -------------------------LDAVRQSLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTG 1050 (2272)
T ss_pred -------------------------HHHHhhcEEEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 001134699999986 478889999987532 2333 234678899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+. ++.+|||||||||+||++++
T Consensus 1051 L~~~~~~-~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1051 LHHKRNE-EAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred CchhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 9876654 67999999999999999974
No 333
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.4e-23 Score=187.79 Aligned_cols=100 Identities=27% Similarity=0.377 Sum_probs=85.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
+.++++|||||+|||+||.||+.+|++||.||||++||...+..+.++|+ +++.|+|+||||+..+.++||||+||
T Consensus 148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VM 227 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM 227 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEE
Confidence 57899999999999999999999999999999999999998766655554 46789999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHHHHHHHHH
Q psy2684 79 DMKKLFYYKGNFTLFKKMYVQKRK 102 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~~~~~~~~ 102 (356)
..|++++.+...+.|.+....+..
T Consensus 228 YaG~iVE~g~~~~i~~~P~HPYT~ 251 (316)
T COG0444 228 YAGRIVEEGPVEEIFKNPKHPYTR 251 (316)
T ss_pred ECcEEEEeCCHHHHhcCCCChHHH
Confidence 999999976655555554444333
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.8e-23 Score=178.91 Aligned_cols=111 Identities=38% Similarity=0.597 Sum_probs=88.8
Q ss_pred EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|++. ..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~---------- 70 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD---------- 70 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC----------
Confidence 4689999999432 26999999999999999999999999999999999999999999999986542100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
....+..++|++|++ .+++ .|+.+++
T Consensus 71 ----------------------~~~~~~~i~~~~~~~--~~~~-~t~~e~l----------------------------- 96 (171)
T cd03228 71 ----------------------LESLRKNIAYVPQDP--FLFS-GTIRENI----------------------------- 96 (171)
T ss_pred ----------------------HHHHHhhEEEEcCCc--hhcc-chHHHHh-----------------------------
Confidence 000124689999986 3444 4666553
Q ss_pred CCCChHHHHHHHHHHHcC
Q psy2684 339 RDLSGGQKARVALAELTL 356 (356)
Q Consensus 339 ~~LSGGqkqRvalA~~~l 356 (356)
|||||||||+||++++
T Consensus 97 --LS~G~~~rl~la~al~ 112 (171)
T cd03228 97 --LSGGQRQRIAIARALL 112 (171)
T ss_pred --hCHHHHHHHHHHHHHh
Confidence 9999999999999874
No 335
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.2e-23 Score=173.28 Aligned_cols=157 Identities=24% Similarity=0.253 Sum_probs=112.8
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.+|++++.++++.| +.....+++||++++||+++|+|.||||||||+++|++-+.|+.|+|.+...+=.. .
T Consensus 3 ~~PLL~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~-----~--- 73 (258)
T COG4107 3 DKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP-----R--- 73 (258)
T ss_pred CCcceeehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCc-----h---
Confidence 35789999999999 56678999999999999999999999999999999999999999999986422100 0
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCC----CHHHHHHHh----cCCCHHHHHHHHhhc
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD----TPCEYLMKL----FNLPYEKSRRQLGMF 327 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~----t~~e~~~~~----~~~~~~~~~~~L~~~ 327 (356)
-++. ..+.+.+.-.+...|++.|+|.+.+-..- ++.|-++.. ++--...+.++|+.+
T Consensus 74 ------------dl~~---msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~V 138 (258)
T COG4107 74 ------------DLYT---MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138 (258)
T ss_pred ------------hHhh---hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhc
Confidence 0000 01111111123468999999876553322 344544432 233345677899999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.++....+..+.++|||+|||+.|||-|+
T Consensus 139 EI~~~RiDD~PrtFSGGMqQRLQiARnLV 167 (258)
T COG4107 139 EIDLDRIDDLPRTFSGGMQQRLQIARNLV 167 (258)
T ss_pred ccCcccccCcccccchHHHHHHHHHHHhc
Confidence 99865544456999999999999999763
No 336
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.88 E-value=4.3e-23 Score=210.07 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=108.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++|+++.|++++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----------- 402 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV----------- 402 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC-----------
Confidence 589999999996546789999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcC---------
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFG--------- 328 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~--------- 328 (356)
. ....+..++|++|++. ++ +.|+.+++... ...+.+++++.++..+
T Consensus 403 ---------------~------~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~ 458 (585)
T TIGR01192 403 ---------------T------RESLRKSIATVFQDAG--LF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRS 458 (585)
T ss_pred ---------------C------HHHHHhheEEEccCCc--cC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 0 0011356999999973 55 46899998643 2344555555444433
Q ss_pred --CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 --LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 --l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+...... ....||||||||++|||+++
T Consensus 459 ~g~~t~~~~-~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 459 NGYDTLVGE-RGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred ccccchhcC-CCCCCCHHHHHHHHHHHHHh
Confidence 2322222 45789999999999999975
No 337
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.88 E-value=4.1e-23 Score=185.55 Aligned_cols=129 Identities=30% Similarity=0.398 Sum_probs=100.4
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG 259 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG 259 (356)
+.++++++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 23 l~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~------------- 88 (224)
T cd03220 23 LGILGRKGEV-GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL------------- 88 (224)
T ss_pred hhhhhhhhhc-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-------------
Confidence 6789999999 66789999999999999999999999999999999999999999999998754310
Q ss_pred CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCc
Q psy2684 260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSY 332 (356)
Q Consensus 260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~ 332 (356)
+.+. ..+.+..|+.+++... .+... ..+.++++.+++.+.
T Consensus 89 -------------------------------~~~~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 135 (224)
T cd03220 89 -------------------------------LGLG--GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF 135 (224)
T ss_pred -------------------------------hccc--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 0000 1133456788876432 22222 235667888999776
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. +++.+|||||||||+||++++
T Consensus 136 ~~-~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 136 ID-LPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred hh-CChhhCCHHHHHHHHHHHHHh
Confidence 55 477999999999999999974
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.88 E-value=1e-22 Score=209.39 Aligned_cols=132 Identities=22% Similarity=0.314 Sum_probs=108.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
..++++|+++.|++++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------------- 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------------- 513 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------------
Confidence 4699999999996556799999999999999999999999999999999999999999886531
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--------CCCHHHHHHHHhhcCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--------NLPYEKSRRQLGMFGL 329 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--------~~~~~~~~~~L~~~~l 329 (356)
+.+++|++|++. +++. |+.+++.... +...+++.++++.+++
T Consensus 514 ---------------------------~~~i~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 514 ---------------------------KGKLFYVPQRPY--MTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred ---------------------------CCcEEEECCCCC--CCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 236899999973 5555 9999875421 2345677888999998
Q ss_pred CCccccCC---------CCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIP---------IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~---------~~~LSGGqkqRvalA~~~l 356 (356)
.+.... + ..+||||||||++|||+++
T Consensus 564 ~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~ 598 (659)
T TIGR00954 564 THILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFY 598 (659)
T ss_pred HHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 765432 3 2689999999999999974
No 339
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=4.9e-23 Score=187.88 Aligned_cols=135 Identities=24% Similarity=0.245 Sum_probs=102.9
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~ 260 (356)
+++||++. .+|+++||+|.+|++++|+||||||||||+++|+|+++ .+|+|.++|.++...
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~------------- 62 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAW------------- 62 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcC-------------
Confidence 46777774 27999999999999999999999999999999999985 599999998765210
Q ss_pred chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHhhcCCCCccc
Q psy2684 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~----~~~~~~~L~~~~l~~~~~ 334 (356)
. ....+..++|++|++. ++...|+.+++.... ... ...+.++++.+++.....
T Consensus 63 ------------------~-~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 121 (248)
T PRK03695 63 ------------------S-AAELARHRAYLSQQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG 121 (248)
T ss_pred ------------------C-HHHHhhheEEecccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc
Confidence 0 0001235899999863 555778988875431 111 234678899999976554
Q ss_pred cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~l 356 (356)
+++..|||||||||+||++++
T Consensus 122 -~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 122 -RSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred -CCcccCCHHHHHHHHHHHHHh
Confidence 477999999999999999974
No 340
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=1.3e-22 Score=187.83 Aligned_cols=130 Identities=26% Similarity=0.341 Sum_probs=97.5
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+.+.++++|+++. ++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------- 98 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------
Confidence 3457899999985 34699999999999999999999999999999999999999999998752
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc---
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY--- 332 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~--- 332 (356)
+++|++|++ .+++ .|+.+++..........+...+..+++...
T Consensus 99 -------------------------------~i~yv~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~ 144 (282)
T cd03291 99 -------------------------------RISFSSQFS--WIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144 (282)
T ss_pred -------------------------------EEEEEeCcc--cccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHh
Confidence 378999986 3555 488888753222222233344444444221
Q ss_pred -------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 -------AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 -------~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
....++.+|||||||||+||++++
T Consensus 145 ~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 145 FPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred ccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 111245799999999999999974
No 341
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.1e-23 Score=180.10 Aligned_cols=117 Identities=26% Similarity=0.305 Sum_probs=94.8
Q ss_pred cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeee
Q psy2684 179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVA 253 (356)
Q Consensus 179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ia 253 (356)
.++++|+++.|++ ++++++++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-------- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-------- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------
Confidence 5789999999953 256999999999999999999999999999999999986 489999999876541
Q ss_pred eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcc
Q psy2684 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~ 333 (356)
...+..++|++|++ .+++..|+.+++.... .+
T Consensus 75 ----------------------------~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~---------~~--------- 106 (192)
T cd03232 75 ----------------------------KNFQRSTGYVEQQD--VHSPNLTVREALRFSA---------LL--------- 106 (192)
T ss_pred ----------------------------HHhhhceEEecccC--ccccCCcHHHHHHHHH---------HH---------
Confidence 01124689999986 3677789998874210 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+|||||+|||+||++++
T Consensus 107 -----~~LSgGe~qrv~la~al~ 124 (192)
T cd03232 107 -----RGLSVEQRKRLTIGVELA 124 (192)
T ss_pred -----hcCCHHHhHHHHHHHHHh
Confidence 189999999999999874
No 342
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.88 E-value=5.2e-23 Score=209.54 Aligned_cols=142 Identities=28% Similarity=0.377 Sum_probs=110.0
Q ss_pred cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++|+++.|+++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~-------- 408 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD-------- 408 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC--------
Confidence 58999999999642 56999999999999999999999999999999999999999999999998763100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCc---
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSY--- 332 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~--- 332 (356)
....+..++|++|++. +| +.|+.+|+.... ..+.+++.+.++.+++...
T Consensus 409 ------------------------~~~~~~~i~~~~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~ 461 (576)
T TIGR02204 409 ------------------------PAELRARMALVPQDPV--LF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISA 461 (576)
T ss_pred ------------------------HHHHHHhceEEccCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 0011346999999973 44 568999986432 3456677777777665321
Q ss_pred --------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 --------AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 --------~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... ....||||||||++|||+++
T Consensus 462 l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 462 LPEGYDTYLGE-RGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred CCCCCCceeCC-CCCcCCHHHHHHHHHHHHHH
Confidence 111 23579999999999999974
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=2.9e-22 Score=202.81 Aligned_cols=97 Identities=35% Similarity=0.543 Sum_probs=91.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC-
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM- 80 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~- 80 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.+++++.++|.++++|||+||||++++..+||+|++|++
T Consensus 439 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGD 518 (556)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 3678999999999999999999999999999999999999999999999999988999999999999999999999986
Q ss_pred CeEeEecCCHHHHHHHHH
Q psy2684 81 KKLFYYKGNFTLFKKMYV 98 (356)
Q Consensus 81 g~~~~~~g~~~~~~~~~~ 98 (356)
|++..|.|+|+.|.+...
T Consensus 519 g~~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 519 SQVEWFEGNFQEYEEDKK 536 (556)
T ss_pred CeEEEecCCHHHHHHHHH
Confidence 899889999999977543
No 344
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.88 E-value=5e-23 Score=209.09 Aligned_cols=142 Identities=26% Similarity=0.326 Sum_probs=109.6
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|++++|+++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~--------- 383 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ--------- 383 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC---------
Confidence 48999999999643 56999999999999999999999999999999999999999999999987753100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCC-----
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPS----- 331 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~----- 331 (356)
....+..++|++|++. +++ .|+.+++... ...+.+++.+.++..++..
T Consensus 384 -----------------------~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~l 437 (569)
T PRK10789 384 -----------------------LDSWRSRLAVVSQTPF--LFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRL 437 (569)
T ss_pred -----------------------HHHHHhheEEEccCCe--ecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 0011356999999973 564 5999998643 2345666666666655532
Q ss_pred ------ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 ------YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ------~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.... ....||||||||++|||+++
T Consensus 438 p~gl~t~~~~-~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 438 PQGYDTEVGE-RGVMLSGGQKQRISIARALL 467 (569)
T ss_pred cCcccceecC-CCCcCCHHHHHHHHHHHHHh
Confidence 1122 24679999999999999974
No 345
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1e-22 Score=180.02 Aligned_cols=80 Identities=36% Similarity=0.478 Sum_probs=72.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWL----DNYLQTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l----~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++++|||||||||+|||||+.+|+|||||||+++||..++..| .++.++.+.|||+||||++++-.++|||++
T Consensus 124 ~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv 203 (248)
T COG1116 124 EDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203 (248)
T ss_pred hhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence 4789999999999999999999999999999999999999997554 455556689999999999999999999999
Q ss_pred EeCC
Q psy2684 78 LDMK 81 (356)
Q Consensus 78 l~~g 81 (356)
|.++
T Consensus 204 l~~~ 207 (248)
T COG1116 204 LSNR 207 (248)
T ss_pred ecCC
Confidence 9984
No 346
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.88 E-value=5.9e-24 Score=176.12 Aligned_cols=121 Identities=36% Similarity=0.477 Sum_probs=95.6
Q ss_pred cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
|+++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~---------------------------- 52 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI---------------------------- 52 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS----------------------------
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc----------------------------
Confidence 6899999999999999999999999999999999999999999998876410
Q ss_pred CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc---cCCCCCCChHHHHHHHHH
Q psy2684 276 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH---TIPIRDLSGGQKARVALA 352 (356)
Q Consensus 276 ~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~LSGGqkqRvalA 352 (356)
.....+..++|++|++ .+++..|+.++. ...++.++++.+++..... .+++..|||||||||+||
T Consensus 53 ----~~~~~~~~i~~~~~~~--~~~~~~tv~~~~------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la 120 (137)
T PF00005_consen 53 ----DIEELRRRIGYVPQDP--QLFPGLTVRENE------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALA 120 (137)
T ss_dssp ----HHHHHHHTEEEEESSH--CHHTTSBHHHHH------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHH
T ss_pred ----cccccccccccccccc--cccccccccccc------ccccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence 0011235699999985 477788888872 2345777888888765332 223499999999999999
Q ss_pred HHcC
Q psy2684 353 ELTL 356 (356)
Q Consensus 353 ~~~l 356 (356)
++++
T Consensus 121 ~al~ 124 (137)
T PF00005_consen 121 RALL 124 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
No 347
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.4e-23 Score=175.99 Aligned_cols=97 Identities=26% Similarity=0.399 Sum_probs=87.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++...|||||+||+.|||+|+.+|+||||||||+.|||.+...+++++.+++ .|||+|||++.-+.+++|+++++.
T Consensus 143 L~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~ 222 (253)
T COG1117 143 LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFY 222 (253)
T ss_pred hhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhc
Confidence 467788999999999999999999999999999999999999888888777764 699999999999999999999999
Q ss_pred CCeEeEecCCHHHHHHHHH
Q psy2684 80 MKKLFYYKGNFTLFKKMYV 98 (356)
Q Consensus 80 ~g~~~~~~g~~~~~~~~~~ 98 (356)
.|++++|+..-.-|..+..
T Consensus 223 ~G~LvE~g~T~~iF~~P~~ 241 (253)
T COG1117 223 LGELVEFGPTDKIFTNPKH 241 (253)
T ss_pred ccEEEEEcCHHhhhcCccH
Confidence 9999999777666665544
No 348
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.5e-22 Score=181.20 Aligned_cols=91 Identities=33% Similarity=0.445 Sum_probs=80.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.+|++.+|||||+|||.|||||+.+|++|||||||+++|+.+...+.++|+++ +.||++||||++.+.+.||+|+.|
T Consensus 133 ~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred hCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE
Confidence 58999999999999999999999999999999999999999998887777765 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHHH
Q psy2684 79 DMKKLFYYKGNFTLFK 94 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~ 94 (356)
+..-+. .|+.+.+.
T Consensus 213 n~~~~~--~G~~~~~~ 226 (254)
T COG1121 213 NRHLIA--SGPPEEVL 226 (254)
T ss_pred cCeeEe--ccChhhcc
Confidence 865543 46665443
No 349
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=3.1e-22 Score=202.51 Aligned_cols=96 Identities=35% Similarity=0.567 Sum_probs=90.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC-
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM- 80 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~- 80 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.+++++.++|+++++|||+||||++++..+||+|++|++
T Consensus 437 ~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 3678999999999999999999999999999999999999999999999999988999999999999999999999997
Q ss_pred CeEeEecCCHHHHHHHH
Q psy2684 81 KKLFYYKGNFTLFKKMY 97 (356)
Q Consensus 81 g~~~~~~g~~~~~~~~~ 97 (356)
|++..|.|+|+.|.+.+
T Consensus 517 ~~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 517 SHVEWFEGNYSEYEEDK 533 (552)
T ss_pred CeEEEeCCCHHHHHHHH
Confidence 68888999998886643
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.88 E-value=9.3e-23 Score=194.30 Aligned_cols=142 Identities=28% Similarity=0.374 Sum_probs=107.5
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
-.+.++++++.-|+. +++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|.++|.++.....+.
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~----- 407 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ----- 407 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH-----
Confidence 468999999977654 47999999999999999999999999999999999999999999999998875432211
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH---------HHHHhh
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS---------RRQLGM 326 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~---------~~~L~~ 326 (356)
..++|||+||+.. +|+ -|+.||+.+.. +.+.+.+ .+++-+
T Consensus 408 ---------------------------lG~hiGYLPQdVe--LF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~ 457 (580)
T COG4618 408 ---------------------------LGRHIGYLPQDVE--LFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILR 457 (580)
T ss_pred ---------------------------hccccCcCcccce--ecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence 1357999999973 664 48999988765 3443332 233333
Q ss_pred cC--CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 327 FG--LPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 327 ~~--l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+- .+..... --..||||||||++|||++
T Consensus 458 lP~GYdT~iG~-~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 458 LPQGYDTRIGE-GGATLSGGQRQRIALARAL 487 (580)
T ss_pred CcCCccCccCC-CCCCCCchHHHHHHHHHHH
Confidence 32 2222211 1258999999999999996
No 351
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=1.5e-22 Score=180.90 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=76.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++..+||++++|
T Consensus 132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 132 AHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 679999999999999999999999
Q ss_pred eCCeE
Q psy2684 79 DMKKL 83 (356)
Q Consensus 79 ~~g~~ 83 (356)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99874
No 352
>KOG0055|consensus
Probab=99.88 E-value=2.5e-23 Score=216.90 Aligned_cols=143 Identities=28% Similarity=0.352 Sum_probs=108.3
Q ss_pred CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
..++++||+|+||.. ..+|+++||+|++|+.++|||||||||||++++|.++|.|++|+|+++|.++..-
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~-------- 420 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL-------- 420 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc--------
Confidence 358999999999743 3699999999999999999999999999999999999999999999999886410
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC------
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG------ 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~------ 328 (356)
. ....+.+||.|+|+| .+-..|+.|++.... +.+.+++.++.+..+
T Consensus 421 -----------------------~-~~~lr~~iglV~QeP---vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~ 473 (1228)
T KOG0055|consen 421 -----------------------N-LKWLRSQIGLVSQEP---VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL 473 (1228)
T ss_pred -----------------------c-hHHHHhhcCeeeech---hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence 0 011245799999998 344678999986543 445555555443332
Q ss_pred -----CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 -----LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 -----l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++....++- -+||||||||+||||+++
T Consensus 474 ~lp~g~~T~vge~g-~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERG-VQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hhHHhhcccccCCC-CCCChHHHHHHHHHHHHH
Confidence 222222222 369999999999999974
No 353
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=4.2e-23 Score=208.99 Aligned_cols=141 Identities=24% Similarity=0.268 Sum_probs=107.9
Q ss_pred cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
-++++|+++.|++. +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~------ 410 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS------ 410 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC------
Confidence 48999999999642 25899999999999999999999999999999999999999999999998763100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~ 334 (356)
....+..++|++|++. +|.. |+.++. ......++++++++.+++.+...
T Consensus 411 --------------------------~~~~~~~i~~v~q~~~--lf~~-ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~ 459 (555)
T TIGR01194 411 --------------------------RDDYRDLFSAIFADFH--LFDD-LIGPDE--GEHASLDNAQQYLQRLEIADKVK 459 (555)
T ss_pred --------------------------HHHHHhhCcEEccChh--hhhh-hhhccc--ccchhHHHHHHHHHHcCCchhhc
Confidence 0011346899999873 4433 444442 12234566788899999876433
Q ss_pred cCC-----CCCCChHHHHHHHHHHHcC
Q psy2684 335 TIP-----IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~-----~~~LSGGqkqRvalA~~~l 356 (356)
..| ...||||||||++|||+++
T Consensus 460 ~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 460 IEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHH
Confidence 211 2579999999999999975
No 354
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.88 E-value=2e-22 Score=191.10 Aligned_cols=91 Identities=27% Similarity=0.432 Sum_probs=82.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+.+..++.++|+++ +.|||+||||++++.++||+|++
T Consensus 134 ~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v 213 (343)
T TIGR02314 134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAV 213 (343)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999998888777663 68999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++.. |+.+++
T Consensus 214 l~~G~iv~~-g~~~~v 228 (343)
T TIGR02314 214 ISNGELIEQ-GTVSEI 228 (343)
T ss_pred EECCEEEEE-cCHHHH
Confidence 999999864 665544
No 355
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.7e-22 Score=183.88 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=94.1
Q ss_pred eeCCCccccccceeeec-----CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCch
Q psy2684 188 GYPGGKVLLEKVNFGLD-----MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGK 262 (356)
Q Consensus 188 ~~~~~~~~l~~~sl~i~-----~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GK 262 (356)
.|++....+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------------- 61 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------------- 61 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------------------
Confidence 45444446667777765 79999999999999999999999999999999987631
Q ss_pred hhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---CCHHHHHHHHhhcCCCCccccCCCC
Q psy2684 263 STFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LPYEKSRRQLGMFGLPSYAHTIPIR 339 (356)
Q Consensus 263 sTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~ 339 (356)
+++|++|++. .+...|+.+++..... .....+.++++.+++....+ +++.
T Consensus 62 ------------------------~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~ 114 (246)
T cd03237 62 ------------------------TVSYKPQYIK--ADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVP 114 (246)
T ss_pred ------------------------eEEEeccccc--CCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChh
Confidence 4789999863 3456788888743211 12234567899999986555 4779
Q ss_pred CCChHHHHHHHHHHHcC
Q psy2684 340 DLSGGQKARVALAELTL 356 (356)
Q Consensus 340 ~LSGGqkqRvalA~~~l 356 (356)
+|||||||||+||++++
T Consensus 115 ~LSgGe~qrv~iaraL~ 131 (246)
T cd03237 115 ELSGGELQRVAIAACLS 131 (246)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 99999999999999974
No 356
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=5.1e-23 Score=213.67 Aligned_cols=142 Identities=25% Similarity=0.424 Sum_probs=110.3
Q ss_pred cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
-++++|++++|+++ +.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~---------- 524 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA---------- 524 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhC----------
Confidence 48999999999643 5699999999999999999999999999999999999999999999999876310
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCC------
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLP------ 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~------ 330 (356)
+. ...+..++|++|++. ++ +.|+.|++... ...+.+++.+.++..++.
T Consensus 525 ------------------~~----~~~r~~i~~v~q~~~--lf-~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 579 (694)
T TIGR01846 525 ------------------DP----AWLRRQMGVVLQENV--LF-SRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL 579 (694)
T ss_pred ------------------CH----HHHHHhCeEEccCCe--eh-hhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 00 011356999999973 44 46899998643 245566666666665543
Q ss_pred -----CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 -----SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 -----~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... ....||||||||++|||+++
T Consensus 580 p~gl~t~i~~-~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 580 PQGYNTEVGE-KGANLSGGQRQRIAIARALV 609 (694)
T ss_pred cCccCcEecC-CCCCCCHHHHHHHHHHHHHH
Confidence 22222 24689999999999999974
No 357
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.3e-22 Score=180.96 Aligned_cols=91 Identities=36% Similarity=0.441 Sum_probs=82.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||+|++
T Consensus 130 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~ 209 (235)
T cd03261 130 EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV 209 (235)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence 36788999999999999999999999999999999999999999988888763 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++.. .|+.+.+
T Consensus 210 l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 210 LYDGKIVA-EGTPEEL 224 (235)
T ss_pred EECCeEEE-ecCHHHH
Confidence 99999974 4665544
No 358
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.9e-22 Score=178.66 Aligned_cols=83 Identities=36% Similarity=0.444 Sum_probs=77.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++.++||++++|
T Consensus 125 ~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 204 (213)
T cd03259 125 NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVM 204 (213)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 5788999999999999999999999999999999999999999998888764 679999999999999999999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|++..
T Consensus 205 ~~G~i~~ 211 (213)
T cd03259 205 NEGRIVQ 211 (213)
T ss_pred ECCEEEe
Confidence 9999864
No 359
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.2e-22 Score=187.52 Aligned_cols=90 Identities=31% Similarity=0.400 Sum_probs=81.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 46889999999999999999999999999999999999999999988877654 689999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++.. |..+.
T Consensus 239 ~~G~i~~~-g~~~~ 251 (305)
T PRK13651 239 KDGKIIKD-GDTYD 251 (305)
T ss_pred ECCEEEEE-CCHHH
Confidence 99999865 44433
No 360
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.87 E-value=8.5e-23 Score=174.47 Aligned_cols=64 Identities=33% Similarity=0.588 Sum_probs=59.5
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
++++|+++.| ++.++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~-~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~ 64 (163)
T cd03216 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV 64 (163)
T ss_pred CEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 4689999999 456799999999999999999999999999999999999999999999998765
No 361
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=1.8e-22 Score=223.41 Aligned_cols=144 Identities=22% Similarity=0.292 Sum_probs=116.3
Q ss_pred CCcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 177 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
..+++++|+++.|++ .+.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~-------- 2006 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN-------- 2006 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--------
Confidence 357999999999953 25799999999999999999999999999999999999999999999998765200
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
....+..|||++|+. .+++.+|+.|++... .+.+. +.+.++|+.+|
T Consensus 2007 -------------------------~~~~r~~IGy~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lg 2059 (2272)
T TIGR01257 2007 -------------------------ISDVHQNMGYCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLG 2059 (2272)
T ss_pred -------------------------HHHHhhhEEEEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 001134699999985 477889999987532 33333 23556899999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+....+ +++++|||||||||+||++++
T Consensus 2060 L~~~~d-k~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2060 LSLYAD-RLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred CHHHhc-CChhhCCHHHHHHHHHHHHHh
Confidence 987665 478999999999999999974
No 362
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=3.9e-22 Score=176.77 Aligned_cols=83 Identities=29% Similarity=0.559 Sum_probs=77.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++ +.|||+||||++++..+||++++|
T Consensus 120 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 199 (205)
T cd03226 120 KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLL 199 (205)
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999999888765 579999999999999999999999
Q ss_pred eCCeEe
Q psy2684 79 DMKKLF 84 (356)
Q Consensus 79 ~~g~~~ 84 (356)
++|+++
T Consensus 200 ~~G~iv 205 (205)
T cd03226 200 ANGAIV 205 (205)
T ss_pred ECCEEC
Confidence 999864
No 363
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=1.8e-22 Score=187.42 Aligned_cols=153 Identities=24% Similarity=0.341 Sum_probs=118.1
Q ss_pred CCCcEEEecceeeeC---CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccC
Q psy2684 176 PPPVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLD 247 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~---~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~ 247 (356)
..++++++|+++.|. +...+++++||+|++||.+||||.||||||-..+.++++++- -+|+|.|+|.++--.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 357899999999994 235699999999999999999999999999999999999865 468999999886311
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH----hcCCCH----HH
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPY----EK 319 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~----~~~~~~----~~ 319 (356)
.+..++.-+..+|+++||+|...++|-.|+...+.. ..+... .+
T Consensus 83 ----------------------------se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r 134 (534)
T COG4172 83 ----------------------------SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARAR 134 (534)
T ss_pred ----------------------------CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111122223457999999998889998888766543 234333 45
Q ss_pred HHHHHhhcCCCCcc--ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 320 SRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 320 ~~~~L~~~~l~~~~--~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.++|+.+|++... .+.+|++|||||||||+||.++.
T Consensus 135 ~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa 173 (534)
T COG4172 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA 173 (534)
T ss_pred HHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence 66789999997532 23356999999999999999874
No 364
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=4.9e-22 Score=175.31 Aligned_cols=81 Identities=35% Similarity=0.522 Sum_probs=72.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||||||+|||||+.+|+++|.||||.+||..+.+.+.+++.+. +.||||||||.+... .|||++.|
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l 215 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIEL 215 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEE
Confidence 3779999999999999999999999999999999999999988777766654 679999999988886 69999999
Q ss_pred eCCeEe
Q psy2684 79 DMKKLF 84 (356)
Q Consensus 79 ~~g~~~ 84 (356)
.+|++.
T Consensus 216 ~dG~~~ 221 (226)
T COG1136 216 KDGKIE 221 (226)
T ss_pred eCCeee
Confidence 999853
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=7.4e-22 Score=203.57 Aligned_cols=93 Identities=35% Similarity=0.553 Sum_probs=88.8
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+||||||||++||++|+.+|++|||||||||||+.++++|.+.+.++++|||+||||++++..+||++++|++|+
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 57899999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EeEecCCHHHHHH
Q psy2684 83 LFYYKGNFTLFKK 95 (356)
Q Consensus 83 ~~~~~g~~~~~~~ 95 (356)
++.|.|+|++|.+
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 9988999988854
No 366
>KOG0062|consensus
Probab=99.87 E-value=5.4e-22 Score=189.14 Aligned_cols=94 Identities=33% Similarity=0.585 Sum_probs=89.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
..++.+||||||-||++|.....+|.+|+|||||||||.+++..|...|++|.+.||+||||.+|+..+|+.+|+.++|+
T Consensus 477 ~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~ 556 (582)
T KOG0062|consen 477 LQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGK 556 (582)
T ss_pred hccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecCCHHHHHHH
Q psy2684 83 LFYYKGNFTLFKKM 96 (356)
Q Consensus 83 ~~~~~g~~~~~~~~ 96 (356)
+..+.|..+.|.+.
T Consensus 557 vt~ieg~~~~yKkl 570 (582)
T KOG0062|consen 557 VTPIEGGIDKYKKL 570 (582)
T ss_pred EEeeeccHHHHHHH
Confidence 99999998888653
No 367
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=7.1e-22 Score=185.28 Aligned_cols=91 Identities=26% Similarity=0.476 Sum_probs=82.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++ +.|||++|||++++..+||+|++|
T Consensus 118 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999999999999999998888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+.+
T Consensus 198 ~~G~i~~-~g~~~~l 211 (302)
T TIGR01188 198 DHGRIIA-EGTPEEL 211 (302)
T ss_pred ECCEEEE-ECCHHHH
Confidence 9999985 4665543
No 368
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.87 E-value=7.9e-22 Score=185.10 Aligned_cols=91 Identities=30% Similarity=0.449 Sum_probs=83.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++ +.|||++||+++++..+||||++|
T Consensus 132 ~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 132 ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 36789999999999999999999999999999999999999999999888875 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+.+
T Consensus 212 ~~G~i~~-~g~~~~l 225 (306)
T PRK13537 212 EEGRKIA-EGAPHAL 225 (306)
T ss_pred ECCEEEE-ECCHHHH
Confidence 9999975 4665544
No 369
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=7.8e-22 Score=185.10 Aligned_cols=90 Identities=31% Similarity=0.445 Sum_probs=82.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||+|++|
T Consensus 129 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l 208 (303)
T TIGR01288 129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208 (303)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999999888775 679999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|++.. .|+.+.
T Consensus 209 ~~G~i~~-~g~~~~ 221 (303)
T TIGR01288 209 ESGRKIA-EGRPHA 221 (303)
T ss_pred ECCEEEE-EcCHHH
Confidence 9999875 465544
No 370
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.3e-21 Score=177.75 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=82.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++
T Consensus 138 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 138 AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG 217 (241)
T ss_pred hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999999988888764 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+++
T Consensus 218 l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 218 LKDGRIVF-DGPPAEL 232 (241)
T ss_pred EECCEEEe-ecCHHHh
Confidence 99999975 4666554
No 371
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.4e-22 Score=175.39 Aligned_cols=83 Identities=31% Similarity=0.551 Sum_probs=78.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||++++.++||++++|++
T Consensus 125 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 5788999999999999999999999999999999999999999999999876 57999999999999999999999999
Q ss_pred CeEeE
Q psy2684 81 KKLFY 85 (356)
Q Consensus 81 g~~~~ 85 (356)
|++..
T Consensus 205 g~i~~ 209 (211)
T cd03264 205 GKLVF 209 (211)
T ss_pred CEEEe
Confidence 99874
No 372
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=178.31 Aligned_cols=89 Identities=29% Similarity=0.427 Sum_probs=80.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++.++||+|++|
T Consensus 126 ~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l 205 (241)
T PRK14250 126 TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL 205 (241)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 5788999999999999999999999999999999999999999988877753 689999999999999999999999
Q ss_pred eCCeEeEecCCHH
Q psy2684 79 DMKKLFYYKGNFT 91 (356)
Q Consensus 79 ~~g~~~~~~g~~~ 91 (356)
++|+++......+
T Consensus 206 ~~G~i~~~~~~~~ 218 (241)
T PRK14250 206 NKGILVEYAKTYD 218 (241)
T ss_pred eCCEEEEeCCHHH
Confidence 9999987644433
No 373
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.5e-22 Score=187.38 Aligned_cols=89 Identities=34% Similarity=0.506 Sum_probs=80.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+|||+|||+|+.+|++|||||||++||+..+.++.+.|++ ++.|+|+||||.+++..+||+|++
T Consensus 130 ~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~v 209 (351)
T PRK11432 130 EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209 (351)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 4789999999999999999999999999999999999999999887776654 478999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|++... |+.+
T Consensus 210 m~~G~i~~~-g~~~ 222 (351)
T PRK11432 210 MNKGKIMQI-GSPQ 222 (351)
T ss_pred EECCEEEEE-cCHH
Confidence 999999875 4443
No 374
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=1.1e-21 Score=174.94 Aligned_cols=85 Identities=29% Similarity=0.443 Sum_probs=78.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||++++
T Consensus 124 ~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 203 (213)
T cd03301 124 LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV 203 (213)
T ss_pred HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 36788999999999999999999999999999999999999999988888754 67999999999999999999999
Q ss_pred EeCCeEeEe
Q psy2684 78 LDMKKLFYY 86 (356)
Q Consensus 78 l~~g~~~~~ 86 (356)
|++|+++.+
T Consensus 204 l~~g~~~~~ 212 (213)
T cd03301 204 MNDGQIQQI 212 (213)
T ss_pred EECCEEEec
Confidence 999999764
No 375
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=185.59 Aligned_cols=89 Identities=26% Similarity=0.257 Sum_probs=80.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+|||+||+||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++.++||+|++|
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 578899999999999999999999999999999999999999888877775 4689999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++.. |+.++
T Consensus 233 ~~G~ive~-g~~~~ 245 (330)
T PRK15093 233 YCGQTVET-APSKE 245 (330)
T ss_pred ECCEEEEE-CCHHH
Confidence 99999864 55443
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=1.3e-21 Score=177.86 Aligned_cols=90 Identities=27% Similarity=0.427 Sum_probs=81.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||.+++.++||++++
T Consensus 139 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 139 AYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVG 218 (243)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 36788999999999999999999999999999999999999999988888764 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++. .|+.+.
T Consensus 219 l~~G~i~~-~~~~~~ 232 (243)
T TIGR02315 219 LKAGEIVF-DGAPSE 232 (243)
T ss_pred EECCEEEe-cCCHHH
Confidence 99999984 466554
No 377
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.3e-21 Score=175.39 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=78.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||++++..+||++++
T Consensus 125 ~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 204 (220)
T cd03265 125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAI 204 (220)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999999988877653 67999999999999999999999
Q ss_pred EeCCeEeEe
Q psy2684 78 LDMKKLFYY 86 (356)
Q Consensus 78 l~~g~~~~~ 86 (356)
|++|+++..
T Consensus 205 l~~G~i~~~ 213 (220)
T cd03265 205 IDHGRIIAE 213 (220)
T ss_pred EeCCEEEEe
Confidence 999999754
No 378
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.86 E-value=1.2e-21 Score=176.45 Aligned_cols=83 Identities=35% Similarity=0.522 Sum_probs=77.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.+.++++ +.|||+||||.+++..+||++++|
T Consensus 140 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 140 NRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219 (228)
T ss_pred hCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 6788999999999999999999999999999999999999999988888764 679999999999999999999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|++..
T Consensus 220 ~~G~i~~ 226 (228)
T cd03257 220 YAGKIVE 226 (228)
T ss_pred eCCEEEe
Confidence 9999864
No 379
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.3e-21 Score=186.79 Aligned_cols=90 Identities=29% Similarity=0.406 Sum_probs=80.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+|||+|||||+.+|++|||||||++||+..+.++.+.+++ ++.|+|+||||.+++..+||+|++
T Consensus 128 ~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~v 207 (356)
T PRK11650 128 LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV 207 (356)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4788999999999999999999999999999999999999999887776654 478999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|++..+ |+.+.
T Consensus 208 l~~G~i~~~-g~~~~ 221 (356)
T PRK11650 208 MNGGVAEQI-GTPVE 221 (356)
T ss_pred EeCCEEEEE-CCHHH
Confidence 999999875 54443
No 380
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=184.48 Aligned_cols=89 Identities=27% Similarity=0.477 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||+||+.+|++||+||||++||+.++.++.++|++ .+.|||+||||++++.++||+|++
T Consensus 148 ~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v 227 (327)
T PRK11308 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV 227 (327)
T ss_pred hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999888777764 468999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|+++++ |+.+
T Consensus 228 m~~G~ive~-g~~~ 240 (327)
T PRK11308 228 MYLGRCVEK-GTKE 240 (327)
T ss_pred EECCEEEEE-CCHH
Confidence 999999975 4433
No 381
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.86 E-value=1.3e-21 Score=187.02 Aligned_cols=89 Identities=29% Similarity=0.396 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----W-KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~-~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++.+.+|||||||||+||+||+.+|++|||||||++||+..+.++.+.|++ + +.|+|+||||.+++..+||+|+
T Consensus 131 ~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~ 210 (362)
T TIGR03258 131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG 210 (362)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999888776654 3 6799999999999999999999
Q ss_pred EEeCCeEeEecCCHH
Q psy2684 77 HLDMKKLFYYKGNFT 91 (356)
Q Consensus 77 ~l~~g~~~~~~g~~~ 91 (356)
+|++|+++.. |+.+
T Consensus 211 vl~~G~i~~~-g~~~ 224 (362)
T TIGR03258 211 IMKDGRLAAH-GEPQ 224 (362)
T ss_pred EEECCEEEEE-cCHH
Confidence 9999999875 5443
No 382
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=1.9e-21 Score=178.32 Aligned_cols=90 Identities=37% Similarity=0.503 Sum_probs=82.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++ +.|||+||||.+++..+||+|++|+
T Consensus 147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 5778999999999999999999999999999999999999999998887764 6799999999999999999999999
Q ss_pred CCeEeEecCCHHHH
Q psy2684 80 MKKLFYYKGNFTLF 93 (356)
Q Consensus 80 ~g~~~~~~g~~~~~ 93 (356)
+|+++. .|+++++
T Consensus 227 ~G~i~~-~~~~~~~ 239 (257)
T PRK10619 227 QGKIEE-EGAPEQL 239 (257)
T ss_pred CCEEEE-eCCHHHh
Confidence 999985 5776654
No 383
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.86 E-value=1.1e-21 Score=176.99 Aligned_cols=85 Identities=32% Similarity=0.393 Sum_probs=78.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++
T Consensus 108 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 187 (230)
T TIGR01184 108 ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM 187 (230)
T ss_pred HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 35788999999999999999999999999999999999999999988877653 67999999999999999999999
Q ss_pred EeCCeEeEe
Q psy2684 78 LDMKKLFYY 86 (356)
Q Consensus 78 l~~g~~~~~ 86 (356)
|++|+++.+
T Consensus 188 l~~G~i~~~ 196 (230)
T TIGR01184 188 LTNGPAANI 196 (230)
T ss_pred EeCCcEecc
Confidence 999999754
No 384
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=181.55 Aligned_cols=91 Identities=31% Similarity=0.372 Sum_probs=82.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||+|++|
T Consensus 138 ~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l 217 (288)
T PRK13643 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217 (288)
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 36889999999999999999999999999999999999999999988887654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+.+
T Consensus 218 ~~G~i~~-~g~~~~~ 231 (288)
T PRK13643 218 EKGHIIS-CGTPSDV 231 (288)
T ss_pred ECCEEEE-ECCHHHH
Confidence 9999985 4666554
No 385
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-21 Score=181.07 Aligned_cols=91 Identities=31% Similarity=0.406 Sum_probs=82.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||||++
T Consensus 138 ~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~ 217 (287)
T PRK13637 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV 217 (287)
T ss_pred ccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 47889999999999999999999999999999999999999999988888654 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++... |+.+.+
T Consensus 218 l~~G~i~~~-g~~~~~ 232 (287)
T PRK13637 218 MNKGKCELQ-GTPREV 232 (287)
T ss_pred EECCEEEEE-CCHHHH
Confidence 999999864 655544
No 386
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.86 E-value=5.2e-22 Score=204.00 Aligned_cols=148 Identities=26% Similarity=0.359 Sum_probs=115.4
Q ss_pred CcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 178 PVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
++++++|+++.|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~----- 77 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDA----- 77 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCH-----
Confidence 479999999999532 469999999999999999999999999999999999999999999999877531000
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~ 327 (356)
.......+..++|++|++ .+++..|+.|++... .+.. ...+.++++.+
T Consensus 78 -----------------------~~~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~l 132 (648)
T PRK10535 78 -----------------------DALAQLRREHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRL 132 (648)
T ss_pred -----------------------HHHHHHHhccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 000000134699999997 478888988877532 1222 23466789999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+..+ +++..|||||+||++||++++
T Consensus 133 gl~~~~~-~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 133 GLEDRVE-YQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred CChhhhc-CCcccCCHHHHHHHHHHHHHh
Confidence 9987655 467999999999999999974
No 387
>KOG0063|consensus
Probab=99.86 E-value=1.2e-21 Score=182.92 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=69.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++|.+..|||||.||.+||.+-+++.|++++|||.++||...+......++.+ ..=||+|+||+..++-..|-|+.+
T Consensus 207 ~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 207 LDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred HHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEE
Confidence 57889999999999999999999999999999999999998876555545443 467999999999999999999999
Q ss_pred eC
Q psy2684 79 DM 80 (356)
Q Consensus 79 ~~ 80 (356)
..
T Consensus 287 YG 288 (592)
T KOG0063|consen 287 YG 288 (592)
T ss_pred ec
Confidence 74
No 388
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=191.15 Aligned_cols=132 Identities=27% Similarity=0.339 Sum_probs=101.9
Q ss_pred CCcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 177 PPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
.++++++|+++.|+++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 4689999999999543 3589999999999999999999999999999999999999999999976421
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHhhc
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMF 327 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~----~~~~~L~~~ 327 (356)
.+++ .+ .+.+..|+.+++... .+.... .+.++++.+
T Consensus 89 --------------------------------~i~~---~~--~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~l 131 (549)
T PRK13545 89 --------------------------------LIAI---SS--GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFA 131 (549)
T ss_pred --------------------------------eEEe---cc--ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHc
Confidence 0111 11 234456888876431 223222 245678999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
++...... ++.+|||||||||+||++++
T Consensus 132 gL~~~ld~-~~~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 132 DIGKFIYQ-PVKTYSSGMKSRLGFAISVH 159 (549)
T ss_pred CChhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence 99776554 77999999999999999974
No 389
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=173.97 Aligned_cols=83 Identities=35% Similarity=0.474 Sum_probs=77.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||.+++..+||++++|
T Consensus 126 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (214)
T cd03297 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205 (214)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 5788999999999999999999999999999999999999999988888654 679999999999999999999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|++..
T Consensus 206 ~~G~i~~ 212 (214)
T cd03297 206 EDGRLQY 212 (214)
T ss_pred ECCEEEe
Confidence 9999864
No 390
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.86 E-value=1.5e-21 Score=186.26 Aligned_cols=88 Identities=32% Similarity=0.388 Sum_probs=80.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+|||+||++|+.+|++|||||||++||+..+.++.+.|++ ++.|+|+||||.+++..+||+|++
T Consensus 128 ~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~v 207 (353)
T TIGR03265 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVV 207 (353)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 4789999999999999999999999999999999999999998887776654 478999999999999999999999
Q ss_pred EeCCeEeEecCC
Q psy2684 78 LDMKKLFYYKGN 89 (356)
Q Consensus 78 l~~g~~~~~~g~ 89 (356)
|++|++..++..
T Consensus 208 l~~G~i~~~g~~ 219 (353)
T TIGR03265 208 MNHGVIEQVGTP 219 (353)
T ss_pred EECCEEEEEcCH
Confidence 999999876443
No 391
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=1.8e-21 Score=179.72 Aligned_cols=91 Identities=31% Similarity=0.355 Sum_probs=81.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||++++
T Consensus 137 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~ 216 (269)
T PRK11831 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI 216 (269)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence 46788999999999999999999999999999999999999999888887764 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++.. .|..+++
T Consensus 217 l~~G~i~~-~g~~~~~ 231 (269)
T PRK11831 217 VADKKIVA-HGSAQAL 231 (269)
T ss_pred EECCEEEE-eCCHHHH
Confidence 99999975 4665544
No 392
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=184.45 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=79.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+|||+||+||+.+|+|||+||||++||+.++..+.++|++ .+.|||+||||++++.++||+|++|
T Consensus 148 ~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm 227 (326)
T PRK11022 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227 (326)
T ss_pred hCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 578999999999999999999999999999999999999998887776665 3679999999999999999999999
Q ss_pred eCCeEeEecCCHH
Q psy2684 79 DMKKLFYYKGNFT 91 (356)
Q Consensus 79 ~~g~~~~~~g~~~ 91 (356)
++|+++.. |+.+
T Consensus 228 ~~G~ive~-g~~~ 239 (326)
T PRK11022 228 YAGQVVET-GKAH 239 (326)
T ss_pred ECCEEEEE-CCHH
Confidence 99999875 5443
No 393
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=174.67 Aligned_cols=84 Identities=35% Similarity=0.457 Sum_probs=77.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||++++
T Consensus 125 ~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (220)
T cd03293 125 ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204 (220)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999999998888754 57999999999999999999999
Q ss_pred Ee--CCeEeE
Q psy2684 78 LD--MKKLFY 85 (356)
Q Consensus 78 l~--~g~~~~ 85 (356)
|+ +|+++.
T Consensus 205 l~~~~G~i~~ 214 (220)
T cd03293 205 LSARPGRIVA 214 (220)
T ss_pred EECCCCEEEE
Confidence 99 799864
No 394
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=187.32 Aligned_cols=89 Identities=30% Similarity=0.475 Sum_probs=80.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||.+++..+||+|++
T Consensus 127 ~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~v 206 (369)
T PRK11000 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206 (369)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4688999999999999999999999999999999999999999888776664 368999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|++..+ |+.+
T Consensus 207 l~~G~i~~~-g~~~ 219 (369)
T PRK11000 207 LDAGRVAQV-GKPL 219 (369)
T ss_pred EECCEEEEE-cCHH
Confidence 999999865 5443
No 395
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.86 E-value=1.9e-21 Score=184.67 Aligned_cols=91 Identities=31% Similarity=0.477 Sum_probs=83.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++.+.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||++||+++++.++||+|++|
T Consensus 166 ~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il 245 (340)
T PRK13536 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 245 (340)
T ss_pred hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999999999999999999888775 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+.+
T Consensus 246 ~~G~i~~-~g~~~~l 259 (340)
T PRK13536 246 EAGRKIA-EGRPHAL 259 (340)
T ss_pred ECCEEEE-EcCHHHH
Confidence 9999985 4655543
No 396
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.86 E-value=1.7e-21 Score=176.40 Aligned_cols=90 Identities=29% Similarity=0.426 Sum_probs=81.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||++++|
T Consensus 137 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 137 ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999998888764 579999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|++.. .|+.++
T Consensus 217 ~~G~i~~-~~~~~~ 229 (236)
T cd03219 217 DQGRVIA-EGTPDE 229 (236)
T ss_pred eCCEEEe-ecCHHH
Confidence 9999975 455543
No 397
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=1.8e-21 Score=184.27 Aligned_cols=90 Identities=30% Similarity=0.511 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|++ ++.|||+||||++++.++||+|++
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3688999999999999999999999999999999999999999888777764 368999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++.. |+.++
T Consensus 235 l~~G~ive~-g~~~~ 248 (331)
T PRK15079 235 MYLGHAVEL-GTYDE 248 (331)
T ss_pred EECCEEEEE-cCHHH
Confidence 999999874 55544
No 398
>KOG0056|consensus
Probab=99.86 E-value=9e-23 Score=193.02 Aligned_cols=143 Identities=32% Similarity=0.403 Sum_probs=104.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++||+|.|+.++++++|+||++.+|..+|++||||+||||++++|.+++...+|.|.++|+|+...
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv----------- 605 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV----------- 605 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH-----------
Confidence 489999999999899999999999999999999999999999999999999999999999999997421
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHh-------hcCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLG-------MFGLP 330 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~-------~~~l~ 330 (356)
| ..+.+..||.||||. .+|+ .|+..++... ...+.+++.+..+ .++++
T Consensus 606 -----t----------------~~SLRs~IGVVPQDt--vLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 606 -----T----------------QSSLRSSIGVVPQDT--VLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred -----H----------------HHHHHHhcCcccCcc--eeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 0 011245799999986 3554 4555554321 2233333332221 23343
Q ss_pred Ccccc---CCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHT---IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~---~~~~~LSGGqkqRvalA~~~l 356 (356)
+-... ..--.|||||||||||||.+|
T Consensus 662 egY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 662 EGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred hhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 22111 112469999999999999864
No 399
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.86 E-value=2.4e-21 Score=168.27 Aligned_cols=83 Identities=41% Similarity=0.561 Sum_probs=77.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||++++.++||++++|
T Consensus 92 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5678999999999999999999999999999999999999999998888765 569999999999999999999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|++..
T Consensus 172 ~~g~i~~ 178 (180)
T cd03214 172 KDGRIVA 178 (180)
T ss_pred ECCEEEe
Confidence 9999864
No 400
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=2e-21 Score=183.99 Aligned_cols=90 Identities=31% Similarity=0.552 Sum_probs=80.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+||++||+||+.+|++||+||||++||+.++..+.++|++ ++.|||+||||++++.++||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 568899999999999999999999999999999999999999887776654 3679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|++++. |+.+++
T Consensus 236 ~~G~ive~-g~~~~i 249 (330)
T PRK09473 236 YAGRTMEY-GNARDV 249 (330)
T ss_pred ECCEEEEE-CCHHHH
Confidence 99999875 555443
No 401
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=180.70 Aligned_cols=91 Identities=27% Similarity=0.353 Sum_probs=82.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++
T Consensus 139 ~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~ 218 (290)
T PRK13634 139 LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV 218 (290)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46789999999999999999999999999999999999999999888877654 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+++
T Consensus 219 l~~G~i~~-~g~~~~~ 233 (290)
T PRK13634 219 MHKGTVFL-QGTPREI 233 (290)
T ss_pred EECCEEEE-ECCHHHH
Confidence 99999985 4665543
No 402
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=1.4e-21 Score=173.99 Aligned_cols=81 Identities=36% Similarity=0.537 Sum_probs=75.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|
T Consensus 128 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 207 (211)
T cd03225 128 RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL 207 (211)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 469999999999999999999999
Q ss_pred eCCe
Q psy2684 79 DMKK 82 (356)
Q Consensus 79 ~~g~ 82 (356)
++|+
T Consensus 208 ~~G~ 211 (211)
T cd03225 208 EDGK 211 (211)
T ss_pred eCCC
Confidence 9874
No 403
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=179.82 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=82.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||+|++|
T Consensus 132 ~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l 211 (274)
T PRK13647 132 RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL 211 (274)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999999999999999998888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++.+ |+.+.+
T Consensus 212 ~~G~i~~~-g~~~~~ 225 (274)
T PRK13647 212 KEGRVLAE-GDKSLL 225 (274)
T ss_pred ECCEEEEE-CCHHHh
Confidence 99999864 555443
No 404
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=176.87 Aligned_cols=90 Identities=32% Similarity=0.451 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+++.++ +.|||+||||++++..+||++++
T Consensus 130 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 209 (239)
T cd03296 130 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVV 209 (239)
T ss_pred hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 35788999999999999999999999999999999999999999988888764 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|++.. .|+.+.
T Consensus 210 l~~G~i~~-~~~~~~ 223 (239)
T cd03296 210 MNKGRIEQ-VGTPDE 223 (239)
T ss_pred EECCeEEE-ecCHHH
Confidence 99999975 355443
No 405
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=177.14 Aligned_cols=91 Identities=29% Similarity=0.443 Sum_probs=83.2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||+|++|++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLT 222 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5688999999999999999999999999999999999999999999888766 47999999999999999999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++.++.+.+.|
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14255 223 GNLIEFADTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999876555544
No 406
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=178.16 Aligned_cols=91 Identities=29% Similarity=0.477 Sum_probs=83.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|+||||||||++||+.+++++.++|+++ +.|||+||||++++..+||+|++
T Consensus 146 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred HhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 36789999999999999999999999999999999999999999998888764 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++. +.|+++++
T Consensus 226 l~~g~i~-~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVF-YDGSSQQF 240 (262)
T ss_pred EECCEEE-EeCCHHHh
Confidence 9999996 46777665
No 407
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=3.2e-21 Score=177.23 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=89.9
Q ss_pred CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhC
Q psy2684 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 271 (356)
Q Consensus 192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g 271 (356)
.+.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~----------------------------- 86 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE----------------------------- 86 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-----------------------------
Confidence 346899999999999999999999999999999999999999999988752
Q ss_pred CCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHH----HHHHHhhcCCCCccccCCCCCCChH
Q psy2684 272 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGG 344 (356)
Q Consensus 272 ~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSGG 344 (356)
+++++|++ .+.+..|+.+++... .+.+... +..++..+++..... +++.+||||
T Consensus 87 ----------------~~~~~~~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G 147 (264)
T PRK13546 87 ----------------VSVIAISA--GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKKYSSG 147 (264)
T ss_pred ----------------EeEEeccc--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHH
Confidence 23344443 244567888876431 2333222 345677888876554 478999999
Q ss_pred HHHHHHHHHHcC
Q psy2684 345 QKARVALAELTL 356 (356)
Q Consensus 345 qkqRvalA~~~l 356 (356)
|+|||+||++++
T Consensus 148 q~qrv~Laral~ 159 (264)
T PRK13546 148 MRAKLGFSINIT 159 (264)
T ss_pred HHHHHHHHHHHh
Confidence 999999999974
No 408
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.1e-21 Score=172.80 Aligned_cols=84 Identities=31% Similarity=0.420 Sum_probs=77.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||++++..+||++++
T Consensus 122 ~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 201 (211)
T cd03298 122 EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF 201 (211)
T ss_pred HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEE
Confidence 35788999999999999999999999999999999999999999988888653 67999999999999999999999
Q ss_pred EeCCeEeE
Q psy2684 78 LDMKKLFY 85 (356)
Q Consensus 78 l~~g~~~~ 85 (356)
|++|+++.
T Consensus 202 l~~G~i~~ 209 (211)
T cd03298 202 LDNGRIAA 209 (211)
T ss_pred EECCEEee
Confidence 99999864
No 409
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=1.5e-21 Score=174.60 Aligned_cols=83 Identities=33% Similarity=0.574 Sum_probs=78.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++ +.|||+||||.+++..+||++++|+
T Consensus 131 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 210 (218)
T cd03266 131 DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLH 210 (218)
T ss_pred hhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 5778999999999999999999999999999999999999999998888765 5799999999999999999999999
Q ss_pred CCeEeE
Q psy2684 80 MKKLFY 85 (356)
Q Consensus 80 ~g~~~~ 85 (356)
+|++..
T Consensus 211 ~G~i~~ 216 (218)
T cd03266 211 RGRVVY 216 (218)
T ss_pred CCEEee
Confidence 999875
No 410
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=182.64 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=82.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 46788999999999999999999999999999999999999999998888654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++.. |+.+++
T Consensus 250 ~~G~i~~~-g~~~~~ 263 (320)
T PRK13631 250 DKGKILKT-GTPYEI 263 (320)
T ss_pred ECCEEEEe-CCHHHH
Confidence 99999864 665544
No 411
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.86 E-value=2.7e-21 Score=176.58 Aligned_cols=91 Identities=31% Similarity=0.528 Sum_probs=81.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++.++||++++|
T Consensus 138 ~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 138 ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217 (250)
T ss_pred hhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 35788999999999999999999999999999999999999999988887654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+++
T Consensus 218 ~~G~i~~-~~~~~~~ 231 (250)
T PRK11264 218 DQGRIVE-QGPAKAL 231 (250)
T ss_pred ECCEEEE-eCCHHHH
Confidence 9999975 4665544
No 412
>PLN03211 ABC transporter G-25; Provisional
Probab=99.86 E-value=9.2e-22 Score=201.64 Aligned_cols=137 Identities=28% Similarity=0.339 Sum_probs=108.0
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC--CCceeEeeeccccCcCCeeeeecCC
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~--~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.++..
T Consensus 70 ~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~------------ 136 (659)
T PLN03211 70 KISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK------------ 136 (659)
T ss_pred ccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch------------
Confidence 456788888 5678999999999999999999999999999999999999985 8999999865410
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHhhcC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLGMFG 328 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~~L~~~~ 328 (356)
....++||++|+. .+++..|+.|++.... .... +.+.++++.+|
T Consensus 137 ------------------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg 190 (659)
T PLN03211 137 ------------------------QILKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG 190 (659)
T ss_pred ------------------------hhccceEEECccc--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 0123589999985 4778899999875321 1222 23567899999
Q ss_pred CCCccc----cCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAH----TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~----~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..+ +.++..|||||||||+||++++
T Consensus 191 L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred ChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 976432 2356789999999999999874
No 413
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=4.2e-22 Score=219.04 Aligned_cols=143 Identities=24% Similarity=0.353 Sum_probs=107.6
Q ss_pred cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe-eeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE-KVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~-g~~~~~~~~~~ialv 255 (356)
-++++||++.|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.++...
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-------- 453 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-------- 453 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC--------
Confidence 48999999999642 369999999999999999999999999999999999999999999995 4554200
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----------------------
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------------------- 313 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---------------------- 313 (356)
.. ...+.+|||++|++ .+|+ .|+.+++....
T Consensus 454 -----------------------~~-~~lr~~Ig~V~Q~~--~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~ 506 (1466)
T PTZ00265 454 -----------------------NL-KWWRSKIGVVSQDP--LLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506 (1466)
T ss_pred -----------------------CH-HHHHHhccEecccc--cchh-ccHHHHHHhcCCCccccchhccccccccccccc
Confidence 00 01135699999987 3665 58999875421
Q ss_pred ------------------------------------CCCHHHHHHHHhhcCCCCcc----------ccCCCCCCChHHHH
Q psy2684 314 ------------------------------------NLPYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKA 347 (356)
Q Consensus 314 ------------------------------------~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSGGqkq 347 (356)
..+.+++.++++.+++.... .......|||||||
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQ 586 (1466)
T PTZ00265 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQ 586 (1466)
T ss_pred cccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHH
Confidence 11234566777777664321 12245789999999
Q ss_pred HHHHHHHcC
Q psy2684 348 RVALAELTL 356 (356)
Q Consensus 348 RvalA~~~l 356 (356)
|++|||+++
T Consensus 587 RiaIARAll 595 (1466)
T PTZ00265 587 RISIARAII 595 (1466)
T ss_pred HHHHHHHHh
Confidence 999999975
No 414
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=1.6e-21 Score=173.28 Aligned_cols=83 Identities=35% Similarity=0.441 Sum_probs=77.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||.+++..+||++++|+
T Consensus 121 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~ 200 (208)
T cd03268 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIIN 200 (208)
T ss_pred hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEE
Confidence 5778999999999999999999999999999999999999999988888764 5799999999999999999999999
Q ss_pred CCeEeE
Q psy2684 80 MKKLFY 85 (356)
Q Consensus 80 ~g~~~~ 85 (356)
+|+++.
T Consensus 201 ~g~i~~ 206 (208)
T cd03268 201 KGKLIE 206 (208)
T ss_pred CCEEEe
Confidence 999864
No 415
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=1.6e-21 Score=174.03 Aligned_cols=80 Identities=34% Similarity=0.530 Sum_probs=74.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++..+||++++|+
T Consensus 132 ~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 132 DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec
Confidence 5678999999999999999999999999999999999999999998888764 6799999999999999999999999
Q ss_pred CCe
Q psy2684 80 MKK 82 (356)
Q Consensus 80 ~g~ 82 (356)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 874
No 416
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=184.73 Aligned_cols=90 Identities=28% Similarity=0.463 Sum_probs=81.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||+|++
T Consensus 134 ~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 134 ADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999999988888764 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++.. |..++
T Consensus 214 l~~G~i~~~-g~~~~ 227 (343)
T PRK11153 214 IDAGRLVEQ-GTVSE 227 (343)
T ss_pred EECCEEEEE-cCHHH
Confidence 999999854 55433
No 417
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=184.97 Aligned_cols=90 Identities=32% Similarity=0.442 Sum_probs=80.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||+||+.+|++|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||+|++
T Consensus 130 ~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v 209 (353)
T PRK10851 130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV 209 (353)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4788999999999999999999999999999999999999998887776654 368999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++.+ |..++
T Consensus 210 l~~G~i~~~-g~~~~ 223 (353)
T PRK10851 210 MSQGNIEQA-GTPDQ 223 (353)
T ss_pred EECCEEEEE-cCHHH
Confidence 999999875 55443
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=1.3e-21 Score=175.09 Aligned_cols=80 Identities=35% Similarity=0.500 Sum_probs=74.3
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++. +||++++|
T Consensus 135 ~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l 213 (218)
T cd03255 135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIEL 213 (218)
T ss_pred hcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEe
Confidence 5788999999999999999999999999999999999999999988888764 579999999999997 99999999
Q ss_pred eCCeE
Q psy2684 79 DMKKL 83 (356)
Q Consensus 79 ~~g~~ 83 (356)
++|++
T Consensus 214 ~~G~i 218 (218)
T cd03255 214 RDGKI 218 (218)
T ss_pred eCCcC
Confidence 99864
No 419
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.5e-21 Score=180.54 Aligned_cols=90 Identities=29% Similarity=0.388 Sum_probs=80.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||++++
T Consensus 144 ~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~ 223 (289)
T PRK13645 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIV 223 (289)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999999988877654 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++.. |+.+.
T Consensus 224 l~~G~i~~~-g~~~~ 237 (289)
T PRK13645 224 MHEGKVISI-GSPFE 237 (289)
T ss_pred EECCEEEEe-CCHHH
Confidence 999999865 55443
No 420
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.3e-22 Score=168.12 Aligned_cols=151 Identities=27% Similarity=0.423 Sum_probs=112.5
Q ss_pred cEEEecceeeeC----CC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCee
Q psy2684 179 VLGLHDVTFGYP----GG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 179 ~l~~~~l~~~~~----~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~i 252 (356)
.+.++|+++.|- ++ -++++++||+|+.||++++-||||+|||||+++|.+-|.|++|.|.+....-.+.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vd----- 78 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVD----- 78 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhh-----
Confidence 477888888773 23 2689999999999999999999999999999999999999999999976432110
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHh
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLG 325 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~ 325 (356)
++. ..| .++..-++..|||+.|.. ...|.-...+.++.. .+.+. ..++.+|.
T Consensus 79 -l~~----------------a~p--r~vl~vRr~TiGyVSQFL--RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~ 137 (235)
T COG4778 79 -LVT----------------AEP--REVLEVRRTTIGYVSQFL--RVIPRVSALDVVAEPLLARGVPREVARAKAADLLT 137 (235)
T ss_pred -hhc----------------cCh--HHHHHHHHhhhHHHHHHH--HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence 000 000 111112345699999974 355666656655432 34433 45678999
Q ss_pred hcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
+++++...+.-+|.++||||||||-|||.+
T Consensus 138 rLnlperLW~LaPaTFSGGEqQRVNIaRgf 167 (235)
T COG4778 138 RLNLPERLWSLAPATFSGGEQQRVNIARGF 167 (235)
T ss_pred HcCCCHHHhcCCCcccCCchheehhhhhhh
Confidence 999999888889999999999999999975
No 421
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-21 Score=177.17 Aligned_cols=83 Identities=34% Similarity=0.464 Sum_probs=77.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|
T Consensus 128 ~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l 207 (257)
T PRK11247 128 NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI 207 (257)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6788999999999999999999999999999999999999998888777653 689999999999999999999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|+++.
T Consensus 208 ~~G~i~~ 214 (257)
T PRK11247 208 EEGKIGL 214 (257)
T ss_pred ECCEEEe
Confidence 9999975
No 422
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-21 Score=179.77 Aligned_cols=91 Identities=27% Similarity=0.388 Sum_probs=82.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|
T Consensus 139 ~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l 218 (287)
T PRK13641 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL 218 (287)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46889999999999999999999999999999999999999999998888765 479999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|..+.+
T Consensus 219 ~~G~i~~-~g~~~~~ 232 (287)
T PRK13641 219 EHGKLIK-HASPKEI 232 (287)
T ss_pred ECCEEEE-eCCHHHH
Confidence 9999975 4655543
No 423
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.3e-21 Score=177.88 Aligned_cols=91 Identities=30% Similarity=0.377 Sum_probs=81.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+++.++ +.|||++|||++++.++||++++
T Consensus 154 ~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~ 233 (269)
T cd03294 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI 233 (269)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 36788999999999999999999999999999999999999999988887654 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++..+ |+.+.+
T Consensus 234 l~~G~i~~~-g~~~~~ 248 (269)
T cd03294 234 MKDGRLVQV-GTPEEI 248 (269)
T ss_pred EECCEEEEe-CCHHHH
Confidence 999999864 555443
No 424
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.8e-21 Score=178.64 Aligned_cols=91 Identities=25% Similarity=0.344 Sum_probs=82.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||.+++..+||++++|
T Consensus 130 ~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 130 RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred hcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++.. |+.+++
T Consensus 210 ~~G~i~~~-g~~~~~ 223 (271)
T PRK13638 210 RQGQILTH-GAPGEV 223 (271)
T ss_pred ECCEEEEe-CCHHHH
Confidence 99999864 555443
No 425
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=1.9e-21 Score=173.36 Aligned_cols=81 Identities=35% Similarity=0.475 Sum_probs=75.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||++++|
T Consensus 126 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 479999999999999999999999
Q ss_pred eCCe
Q psy2684 79 DMKK 82 (356)
Q Consensus 79 ~~g~ 82 (356)
++|.
T Consensus 206 ~~~~ 209 (213)
T cd03235 206 NRTV 209 (213)
T ss_pred cCcE
Confidence 8863
No 426
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.85 E-value=2.9e-21 Score=186.48 Aligned_cols=91 Identities=31% Similarity=0.419 Sum_probs=82.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+++|++|||||||++||+.++..+.++|+++ +.|||++|||++++.++|||+++|
T Consensus 133 ~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l 212 (402)
T PRK09536 133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212 (402)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 47889999999999999999999999999999999999999998888877765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+++
T Consensus 213 ~~G~iv~-~G~~~ev 226 (402)
T PRK09536 213 ADGRVRA-AGPPADV 226 (402)
T ss_pred ECCEEEE-ecCHHHH
Confidence 9999986 4666544
No 427
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=2.6e-21 Score=185.69 Aligned_cols=87 Identities=28% Similarity=0.377 Sum_probs=79.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+|||+|||+|+.+|++|||||||++||+..+.+|.+.|++ .+.|+|+||||.+++..+||+|++
T Consensus 138 ~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~v 217 (375)
T PRK09452 138 AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVV 217 (375)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4788999999999999999999999999999999999999999887776654 478999999999999999999999
Q ss_pred EeCCeEeEecC
Q psy2684 78 LDMKKLFYYKG 88 (356)
Q Consensus 78 l~~g~~~~~~g 88 (356)
|++|++...+.
T Consensus 218 l~~G~i~~~g~ 228 (375)
T PRK09452 218 MRDGRIEQDGT 228 (375)
T ss_pred EECCEEEEEcC
Confidence 99999987643
No 428
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=3.1e-21 Score=180.85 Aligned_cols=91 Identities=32% Similarity=0.536 Sum_probs=84.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++.+..|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||++||+++++.++||||++|+
T Consensus 127 ~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~ 206 (301)
T TIGR03522 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIIN 206 (301)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 36789999999999999999999999999999999999999999999988877 5799999999999999999999999
Q ss_pred CCeEeEecCCHHHH
Q psy2684 80 MKKLFYYKGNFTLF 93 (356)
Q Consensus 80 ~g~~~~~~g~~~~~ 93 (356)
+|++.. .|+.+++
T Consensus 207 ~G~i~~-~g~~~~~ 219 (301)
T TIGR03522 207 KGKIVA-DKKLDEL 219 (301)
T ss_pred CCEEEE-eCCHHHH
Confidence 999984 6776654
No 429
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.3e-21 Score=173.38 Aligned_cols=92 Identities=29% Similarity=0.338 Sum_probs=82.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++.+.++|+++ +.|||+||||++++..+||++++
T Consensus 123 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 202 (232)
T PRK10771 123 LARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV 202 (232)
T ss_pred HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999998887777653 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFK 94 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~ 94 (356)
|++|++.. .|+++.+.
T Consensus 203 l~~g~i~~-~g~~~~~~ 218 (232)
T PRK10771 203 VADGRIAW-DGPTDELL 218 (232)
T ss_pred EECCEEEE-eCCHHHHH
Confidence 99999974 57776654
No 430
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=3.1e-21 Score=174.22 Aligned_cols=91 Identities=27% Similarity=0.330 Sum_probs=81.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||++++.++||++++|
T Consensus 127 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 206 (232)
T cd03218 127 RKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206 (232)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999988877654 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|++.. .|+.+.+
T Consensus 207 ~~G~i~~-~~~~~~~ 220 (232)
T cd03218 207 YEGKVLA-EGTPEEI 220 (232)
T ss_pred ECCeEEE-EeCHHHh
Confidence 9999974 4655443
No 431
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.4e-21 Score=172.34 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=78.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.++++ +.|||+||||.+++.++||++++|+
T Consensus 123 ~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 202 (210)
T cd03269 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLN 202 (210)
T ss_pred hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEe
Confidence 5678999999999999999999999999999999999999999998888765 5799999999999999999999999
Q ss_pred CCeEeEe
Q psy2684 80 MKKLFYY 86 (356)
Q Consensus 80 ~g~~~~~ 86 (356)
+|++..+
T Consensus 203 ~g~i~~~ 209 (210)
T cd03269 203 KGRAVLY 209 (210)
T ss_pred CCEEEec
Confidence 9998753
No 432
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=175.38 Aligned_cols=90 Identities=23% Similarity=0.427 Sum_probs=81.8
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||++++|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 5678999999999999999999999999999999999999999999888875 47999999999999999999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++.+ |+.+++
T Consensus 221 G~~~~~-~~~~~~ 232 (250)
T PRK14245 221 GEMVEY-DDTKKI 232 (250)
T ss_pred CEEEEE-CCHHHH
Confidence 999854 555544
No 433
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.9e-21 Score=173.72 Aligned_cols=90 Identities=26% Similarity=0.428 Sum_probs=81.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++..+||++++
T Consensus 134 ~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 213 (233)
T cd03258 134 ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAV 213 (233)
T ss_pred hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 35788999999999999999999999999999999999999999988888754 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++. .|+.++
T Consensus 214 l~~G~i~~-~~~~~~ 227 (233)
T cd03258 214 MEKGEVVE-EGTVEE 227 (233)
T ss_pred EECCEEEE-ecCHHH
Confidence 99999985 355443
No 434
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=176.10 Aligned_cols=89 Identities=28% Similarity=0.337 Sum_probs=81.2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD 222 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 5788999999999999999999999999999999999999999999888865 47999999999999999999999999
Q ss_pred CeEeEecCCHHH
Q psy2684 81 KKLFYYKGNFTL 92 (356)
Q Consensus 81 g~~~~~~g~~~~ 92 (356)
|++..+ |..++
T Consensus 223 G~i~~~-g~~~~ 233 (252)
T PRK14239 223 GDLIEY-NDTKQ 233 (252)
T ss_pred CEEEEe-CCHHH
Confidence 999865 44433
No 435
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=3.7e-21 Score=174.68 Aligned_cols=91 Identities=30% Similarity=0.498 Sum_probs=82.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||++++|
T Consensus 130 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 130 AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred HhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999988888754 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+++++
T Consensus 210 ~~G~i~~-~g~~~~~ 223 (240)
T PRK09493 210 DKGRIAE-DGDPQVL 223 (240)
T ss_pred ECCEEEe-eCCHHHH
Confidence 9999985 4666654
No 436
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.85 E-value=2.1e-21 Score=173.12 Aligned_cols=81 Identities=33% Similarity=0.505 Sum_probs=75.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.+.++++ +.|||+||||.+++..+||++++|+
T Consensus 131 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 131 RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred hCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 5778999999999999999999999999999999999999999998888765 5799999999999999999999999
Q ss_pred CCeE
Q psy2684 80 MKKL 83 (356)
Q Consensus 80 ~g~~ 83 (356)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9864
No 437
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.3e-21 Score=185.22 Aligned_cols=87 Identities=32% Similarity=0.402 Sum_probs=78.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN----YLQTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~----~l~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+|||+||++|+.+|++|||||||++||+..+.++.+ ++++++.|+|+||||.+++..+||+|++
T Consensus 143 ~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~v 222 (377)
T PRK11607 143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI 222 (377)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 478899999999999999999999999999999999999999877664 4445678999999999999999999999
Q ss_pred EeCCeEeEecC
Q psy2684 78 LDMKKLFYYKG 88 (356)
Q Consensus 78 l~~g~~~~~~g 88 (356)
|++|++..++.
T Consensus 223 l~~G~i~~~g~ 233 (377)
T PRK11607 223 MNRGKFVQIGE 233 (377)
T ss_pred EeCCEEEEEcC
Confidence 99999987643
No 438
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=5.6e-22 Score=170.30 Aligned_cols=144 Identities=27% Similarity=0.335 Sum_probs=108.9
Q ss_pred EEEecceeeeCC----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 180 LGLHDVTFGYPG----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 180 l~~~~l~~~~~~----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++.|+.+.|.. .+++|+++|++|++|+++.|+|.||||||||+++++|.+.|++|.|.++|+++...+.
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~------ 75 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV------ 75 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH------
Confidence 455666665533 3579999999999999999999999999999999999999999999999998752210
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--c----CCC----H---HHHHH
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--F----NLP----Y---EKSRR 322 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~----~~~----~---~~~~~ 322 (356)
..+...++-|||+|....++++|+.|++.-. . ++. . +..++
T Consensus 76 --------------------------~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~ 129 (263)
T COG1101 76 --------------------------AKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRE 129 (263)
T ss_pred --------------------------HHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHH
Confidence 1112346778999988889999999998532 1 121 1 22344
Q ss_pred HHhhcC--CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 323 QLGMFG--LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 323 ~L~~~~--l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.++.++ |.+.... ++.-|||||||-|+|+.+.+
T Consensus 130 ~l~~l~lgLenrL~~-~iglLSGGQRQalsL~MAtl 164 (263)
T COG1101 130 RLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATL 164 (263)
T ss_pred HHhhcccchhhhhcC-hhhhccchHHHHHHHHHHhc
Confidence 566654 4555554 78999999999999998754
No 439
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.9e-21 Score=178.93 Aligned_cols=90 Identities=23% Similarity=0.383 Sum_probs=81.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||+|++|
T Consensus 140 ~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 140 SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM 219 (286)
T ss_pred hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 5789999999999999999999999999999999999999999998888754 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|..+++
T Consensus 220 ~~G~i~~-~g~~~~~ 233 (286)
T PRK13646 220 KEGSIVS-QTSPKEL 233 (286)
T ss_pred ECCEEEE-ECCHHHH
Confidence 9999985 4665543
No 440
>PRK10908 cell division protein FtsE; Provisional
Probab=99.85 E-value=3.5e-21 Score=172.79 Aligned_cols=83 Identities=28% Similarity=0.388 Sum_probs=77.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++.+.+.++++ +.|||+||||.+++..+||+|++|+
T Consensus 132 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred hCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 5788999999999999999999999999999999999999998888777754 5799999999999999999999999
Q ss_pred CCeEeE
Q psy2684 80 MKKLFY 85 (356)
Q Consensus 80 ~g~~~~ 85 (356)
+|+++.
T Consensus 212 ~G~i~~ 217 (222)
T PRK10908 212 DGHLHG 217 (222)
T ss_pred CCEEcc
Confidence 999864
No 441
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=4.5e-21 Score=174.34 Aligned_cols=90 Identities=28% Similarity=0.427 Sum_probs=80.7
Q ss_pred CCCCC-cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh-cCEEEE
Q psy2684 3 EKSTK-EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI-CTDIIH 77 (356)
Q Consensus 3 ~~~~~-~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~-~~~i~~ 77 (356)
++++. +||||||||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||++++
T Consensus 138 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~ 217 (243)
T TIGR01978 138 NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217 (243)
T ss_pred ccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEE
Confidence 46666 59999999999999999999999999999999999999999988876 57999999999999998 899999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++.. .|+.+.+
T Consensus 218 l~~G~i~~-~g~~~~~ 232 (243)
T TIGR01978 218 LLDGRIVK-SGDVELA 232 (243)
T ss_pred EeCCEEEE-ecCHHHh
Confidence 99999975 5666543
No 442
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.85 E-value=3.9e-21 Score=181.88 Aligned_cols=90 Identities=32% Similarity=0.412 Sum_probs=81.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+||||||||++||++|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++
T Consensus 94 ~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v 173 (325)
T TIGR01187 94 ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173 (325)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999999888777653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|++... |+.++
T Consensus 174 l~~G~i~~~-g~~~~ 187 (325)
T TIGR01187 174 MRKGKIAQI-GTPEE 187 (325)
T ss_pred EECCEEEEE-cCHHH
Confidence 999999864 55543
No 443
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.85 E-value=3e-21 Score=173.04 Aligned_cols=82 Identities=34% Similarity=0.537 Sum_probs=75.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.+++.. ||++++
T Consensus 135 ~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~ 213 (221)
T TIGR02211 135 INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLE 213 (221)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEE
Confidence 36788999999999999999999999999999999999999999988888653 6799999999999965 799999
Q ss_pred EeCCeEe
Q psy2684 78 LDMKKLF 84 (356)
Q Consensus 78 l~~g~~~ 84 (356)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999874
No 444
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4e-21 Score=174.64 Aligned_cols=91 Identities=26% Similarity=0.477 Sum_probs=82.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++.++||++++|
T Consensus 135 ~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 135 ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 36778999999999999999999999999999999999999999998888754 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|++.. .|+++.+
T Consensus 215 ~~g~i~~-~~~~~~~ 228 (242)
T PRK11124 215 ENGHIVE-QGDASCF 228 (242)
T ss_pred ECCEEEE-eCCHHHh
Confidence 9999974 5777655
No 445
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.85 E-value=4.5e-21 Score=183.01 Aligned_cols=91 Identities=30% Similarity=0.396 Sum_probs=81.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.+.+.++ +.|||+||||++++..+||+|++
T Consensus 123 ~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999999988777643 68999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++.. |..+.+
T Consensus 203 l~~G~iv~~-g~~~ei 217 (363)
T TIGR01186 203 MKAGEIVQV-GTPDEI 217 (363)
T ss_pred EeCCEEEee-CCHHHH
Confidence 999999864 555544
No 446
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=1.6e-21 Score=163.07 Aligned_cols=61 Identities=41% Similarity=0.762 Sum_probs=56.3
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
++++|+++.| ++..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~ 61 (144)
T cd03221 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61 (144)
T ss_pred CEEEEEEEEE-CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC
Confidence 4688999999 445799999999999999999999999999999999999999999998874
No 447
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=176.83 Aligned_cols=90 Identities=23% Similarity=0.381 Sum_probs=82.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||++|||++++..+||+|++|++
T Consensus 159 ~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 238 (268)
T PRK14248 159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLN 238 (268)
T ss_pred hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEEC
Confidence 5788999999999999999999999999999999999999999999988876 47999999999999999999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++.+ |+.+++
T Consensus 239 G~i~~~-~~~~~~ 250 (268)
T PRK14248 239 GDLVEY-DQTEQI 250 (268)
T ss_pred CEEEEe-CCHHHH
Confidence 999864 555443
No 448
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.5e-21 Score=174.33 Aligned_cols=89 Identities=30% Similarity=0.390 Sum_probs=80.8
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||.+++..+||+|++|
T Consensus 130 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l 209 (242)
T cd03295 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM 209 (242)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 6788999999999999999999999999999999999999999988888764 679999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++.. |+.+.
T Consensus 210 ~~G~i~~~-~~~~~ 222 (242)
T cd03295 210 KNGEIVQV-GTPDE 222 (242)
T ss_pred ECCEEEEe-cCHHH
Confidence 99999854 55443
No 449
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5e-21 Score=175.18 Aligned_cols=90 Identities=29% Similarity=0.436 Sum_probs=81.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||.+++.++||+|++|++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 6778999999999999999999999999999999999999999999988875 47999999999999999999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|++... |..+.+
T Consensus 224 G~i~~~-g~~~~~ 235 (253)
T PRK14242 224 GKLIEV-GPTEQI 235 (253)
T ss_pred CEEEEe-CCHHHH
Confidence 999754 555443
No 450
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.7e-21 Score=176.15 Aligned_cols=84 Identities=32% Similarity=0.436 Sum_probs=77.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++
T Consensus 122 ~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~ 201 (255)
T PRK11248 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVL 201 (255)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 35788999999999999999999999999999999999999999999888765 57999999999999999999999
Q ss_pred Ee--CCeEeE
Q psy2684 78 LD--MKKLFY 85 (356)
Q Consensus 78 l~--~g~~~~ 85 (356)
|+ +|+++.
T Consensus 202 l~~~~G~i~~ 211 (255)
T PRK11248 202 LSPGPGRVVE 211 (255)
T ss_pred EeCCCcEEEE
Confidence 98 488865
No 451
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=1.3e-21 Score=178.78 Aligned_cols=139 Identities=27% Similarity=0.322 Sum_probs=97.6
Q ss_pred ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee-----------EeeeccccCcCCe
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL-----------LEKVNFGLDMESR 251 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~-----------~~g~~~~~~~~~~ 251 (356)
.+++++|++...+++++|+ +.+|++++|+||||||||||+++|+|+++|++|+|. ++|.++..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~----- 77 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN----- 77 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh-----
Confidence 4788999544468999995 999999999999999999999999999999999996 33322210
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHhhcCC
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGL 329 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~~~~~~~~~L~~~~l 329 (356)
. .... ......++|++|+.. +++. ++.+.+..... .....+.++++.+|+
T Consensus 78 -------------~-----------~~~~-~~~~~~i~~~~~~~~--~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl 129 (255)
T cd03236 78 -------------Y-----------FTKL-LEGDVKVIVKPQYVD--LIPK-AVKGKVGELLKKKDERGKLDELVDQLEL 129 (255)
T ss_pred -------------h-----------hHHh-hhcccceeeecchhc--cCch-HHHHHHHHHhchhHHHHHHHHHHHHcCC
Confidence 0 0000 001124788888753 3342 44444432211 123457789999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
...... ++.+||||||||++||++++
T Consensus 130 ~~~~~~-~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 130 RHVLDR-NIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred chhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 876544 67999999999999999874
No 452
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=1.8e-21 Score=174.71 Aligned_cols=118 Identities=29% Similarity=0.375 Sum_probs=90.9
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~ 280 (356)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----------------------------------- 45 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----------------------------------- 45 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----------------------------------
Confidence 578999999999999999999999999999999999999875421
Q ss_pred EeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-C---CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHH
Q psy2684 281 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349 (356)
Q Consensus 281 ~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~---~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRv 349 (356)
..+.+++|++|++........|+.+++.... . . ....+.++++.+++.+.... ++.+|||||||||
T Consensus 46 --~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv 122 (223)
T TIGR03771 46 --KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRV 122 (223)
T ss_pred --HhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcC-ChhhCCHHHHHHH
Confidence 0124699999987422223468888764321 0 1 12346778999999866554 6799999999999
Q ss_pred HHHHHcC
Q psy2684 350 ALAELTL 356 (356)
Q Consensus 350 alA~~~l 356 (356)
+||++++
T Consensus 123 ~laral~ 129 (223)
T TIGR03771 123 LVARALA 129 (223)
T ss_pred HHHHHHh
Confidence 9999974
No 453
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=5e-21 Score=175.16 Aligned_cols=91 Identities=24% Similarity=0.423 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.+++++.+++.+ .+.|||+||||.+++..+||++++
T Consensus 142 ~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~ 221 (253)
T TIGR02323 142 IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV 221 (253)
T ss_pred hhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 3578899999999999999999999999999999999999999998777764 368999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++.. |..+.+
T Consensus 222 l~~G~i~~~-~~~~~~ 236 (253)
T TIGR02323 222 MQQGRVVES-GLTDQV 236 (253)
T ss_pred EECCEEEEE-CCHHHH
Confidence 999999854 555443
No 454
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.3e-21 Score=178.19 Aligned_cols=91 Identities=32% Similarity=0.357 Sum_probs=82.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++ +.|||+||||++++..+||++++|
T Consensus 139 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 218 (280)
T PRK13649 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL 218 (280)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++.+ |..+++
T Consensus 219 ~~G~i~~~-g~~~~~ 232 (280)
T PRK13649 219 EKGKLVLS-GKPKDI 232 (280)
T ss_pred ECCEEEEe-CCHHHH
Confidence 99999864 555443
No 455
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=175.87 Aligned_cols=90 Identities=24% Similarity=0.411 Sum_probs=81.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++.++||+|++|+
T Consensus 148 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~ 227 (258)
T PRK14268 148 LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFL 227 (258)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 4799999999999999999999999
Q ss_pred CCeEeEecCCHHH
Q psy2684 80 MKKLFYYKGNFTL 92 (356)
Q Consensus 80 ~g~~~~~~g~~~~ 92 (356)
+|++... |..++
T Consensus 228 ~G~i~~~-~~~~~ 239 (258)
T PRK14268 228 MGELIEF-GQTRQ 239 (258)
T ss_pred CCEEEEe-CCHHH
Confidence 9999754 55543
No 456
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=5.5e-21 Score=173.71 Aligned_cols=91 Identities=23% Similarity=0.391 Sum_probs=82.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++ +.|||+||||.+++.++||+|++|+
T Consensus 137 ~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 216 (242)
T TIGR03411 137 ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLH 216 (242)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 36788999999999999999999999999999999999999999999988875 4699999999999999999999999
Q ss_pred CCeEeEecCCHHHH
Q psy2684 80 MKKLFYYKGNFTLF 93 (356)
Q Consensus 80 ~g~~~~~~g~~~~~ 93 (356)
+|+++. .|+.+++
T Consensus 217 ~g~~~~-~~~~~~~ 229 (242)
T TIGR03411 217 QGSVLA-EGSLDQV 229 (242)
T ss_pred CCeEEe-eCCHHHH
Confidence 999985 4666554
No 457
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.85 E-value=5.1e-21 Score=172.64 Aligned_cols=91 Identities=29% Similarity=0.438 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|+||||||||++||+.++..+.++++++ +.|||+||||.+++..+||++++
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 198 (230)
T TIGR02770 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV 198 (230)
T ss_pred HhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999998888777653 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|++... |..+++
T Consensus 199 l~~G~i~~~-~~~~~~ 213 (230)
T TIGR02770 199 MDDGRIVER-GTVKEI 213 (230)
T ss_pred EECCEEEEe-CCHHHH
Confidence 999999854 555443
No 458
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.2e-21 Score=175.25 Aligned_cols=91 Identities=22% Similarity=0.379 Sum_probs=81.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||.+++.++||++++
T Consensus 147 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 226 (255)
T PRK11300 147 ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYV 226 (255)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46789999999999999999999999999999999999999999988888653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+.+
T Consensus 227 l~~g~i~~-~~~~~~~ 241 (255)
T PRK11300 227 VNQGTPLA-NGTPEEI 241 (255)
T ss_pred EECCeEEe-cCCHHHH
Confidence 99999985 4555443
No 459
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=5.2e-21 Score=176.38 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=81.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+||++||++|+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 5678999999999999999999999999999999999999999988888764 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHHH
Q psy2684 79 DMKKLFYYKGNFTLFK 94 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~ 94 (356)
++|++.. .|+++.+.
T Consensus 224 ~~G~i~~-~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVE-RGSTADVL 238 (267)
T ss_pred ECCEEEe-cCCHHHHh
Confidence 9999974 56665543
No 460
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.85 E-value=3.1e-21 Score=171.89 Aligned_cols=82 Identities=30% Similarity=0.529 Sum_probs=76.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||++|||.+++.++||++++|
T Consensus 129 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 129 ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred hhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999999998888765 579999999999999999999999
Q ss_pred eCCeE
Q psy2684 79 DMKKL 83 (356)
Q Consensus 79 ~~g~~ 83 (356)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 98864
No 461
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=6.1e-21 Score=173.98 Aligned_cols=90 Identities=33% Similarity=0.447 Sum_probs=81.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++. .|||+||||.+++..+||++++|++
T Consensus 139 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD 218 (247)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 57889999999999999999999999999999999999999999988887653 7999999999999999999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|++... |+.+++
T Consensus 219 G~i~~~-~~~~~~ 230 (247)
T TIGR00972 219 GELVEY-GPTEQI 230 (247)
T ss_pred CEEEEe-CCHHHH
Confidence 999754 555443
No 462
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.4e-21 Score=183.36 Aligned_cols=88 Identities=32% Similarity=0.478 Sum_probs=79.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++
T Consensus 122 ~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~ 201 (352)
T PRK11144 122 LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVV 201 (352)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999998887777653 67999999999999999999999
Q ss_pred EeCCeEeEecCCH
Q psy2684 78 LDMKKLFYYKGNF 90 (356)
Q Consensus 78 l~~g~~~~~~g~~ 90 (356)
|++|++..+ |+.
T Consensus 202 l~~G~i~~~-g~~ 213 (352)
T PRK11144 202 LEQGKVKAF-GPL 213 (352)
T ss_pred EeCCEEEEe-cCH
Confidence 999999865 443
No 463
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=4.6e-21 Score=171.90 Aligned_cols=89 Identities=27% Similarity=0.394 Sum_probs=80.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|+++ +.|||++|||.+++.++||++++|
T Consensus 126 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (222)
T cd03224 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVL 205 (222)
T ss_pred hhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEe
Confidence 36778999999999999999999999999999999999999999988888764 579999999999999999999999
Q ss_pred eCCeEeEecCCHH
Q psy2684 79 DMKKLFYYKGNFT 91 (356)
Q Consensus 79 ~~g~~~~~~g~~~ 91 (356)
++|++.. .|+.+
T Consensus 206 ~~G~i~~-~~~~~ 217 (222)
T cd03224 206 ERGRVVL-EGTAA 217 (222)
T ss_pred eCCeEEE-eCCHH
Confidence 9999975 35543
No 464
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=5.7e-21 Score=175.29 Aligned_cols=89 Identities=25% Similarity=0.433 Sum_probs=80.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+||++||++|+.+|+||||||||++||+.++.++.+.+++ ++.|||+||||++++..+||+|++|
T Consensus 146 ~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 578899999999999999999999999999999999999999998887764 3679999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++. .|..++
T Consensus 226 ~~g~i~~-~~~~~~ 238 (258)
T PRK11701 226 KQGRVVE-SGLTDQ 238 (258)
T ss_pred ECCEEEE-eCCHHH
Confidence 9999985 455544
No 465
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=4.5e-21 Score=173.67 Aligned_cols=84 Identities=32% Similarity=0.539 Sum_probs=78.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++ +.|||+||||++++..+||++++
T Consensus 147 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 226 (236)
T cd03267 147 LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV 226 (236)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE
Confidence 36778999999999999999999999999999999999999999999988876 57999999999999999999999
Q ss_pred EeCCeEeE
Q psy2684 78 LDMKKLFY 85 (356)
Q Consensus 78 l~~g~~~~ 85 (356)
|++|++..
T Consensus 227 l~~G~i~~ 234 (236)
T cd03267 227 IDKGRLLY 234 (236)
T ss_pred EeCCEEEe
Confidence 99999864
No 466
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.8e-21 Score=174.04 Aligned_cols=89 Identities=27% Similarity=0.450 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.+.++ +.|||+||||++++..+||++++|+
T Consensus 136 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFH 215 (246)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEE
Confidence 35678999999999999999999999999999999999999999998888764 6799999999999999999999999
Q ss_pred CCeEeEecCCHH
Q psy2684 80 MKKLFYYKGNFT 91 (356)
Q Consensus 80 ~g~~~~~~g~~~ 91 (356)
+|+++.. |..+
T Consensus 216 ~G~i~~~-g~~~ 226 (246)
T PRK14269 216 LGELIEF-GESK 226 (246)
T ss_pred CCEEEEE-CCHH
Confidence 9999865 4443
No 467
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7e-21 Score=174.32 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=81.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||.+++..+||++++|+
T Consensus 144 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 223 (254)
T PRK14273 144 LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFL 223 (254)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 36778999999999999999999999999999999999999999998888776 4799999999999999999999999
Q ss_pred CCeEeEecCCHHHH
Q psy2684 80 MKKLFYYKGNFTLF 93 (356)
Q Consensus 80 ~g~~~~~~g~~~~~ 93 (356)
+|+++.. |..+++
T Consensus 224 ~G~i~~~-g~~~~~ 236 (254)
T PRK14273 224 NGCIEEE-SSTDEL 236 (254)
T ss_pred CCEEEEe-CCHHHH
Confidence 9999864 555443
No 468
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.5e-21 Score=175.12 Aligned_cols=91 Identities=29% Similarity=0.422 Sum_probs=82.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++ +.|||++|||++++.++||++++|
T Consensus 132 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred HcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 36788999999999999999999999999999999999999999998888754 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|++.. .|+++.+
T Consensus 212 ~~G~i~~-~~~~~~~ 225 (255)
T PRK11231 212 ANGHVMA-QGTPEEV 225 (255)
T ss_pred ECCeEEE-EcCHHHh
Confidence 9999974 4665544
No 469
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=6.9e-21 Score=162.65 Aligned_cols=78 Identities=28% Similarity=0.303 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEeCCeEe
Q psy2684 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLF 84 (356)
Q Consensus 8 ~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~ 84 (356)
+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||++|||.+++.++||++++|++|++.
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 39999999999999999999999999999999999999998888765 579999999999999999999999999986
Q ss_pred E
Q psy2684 85 Y 85 (356)
Q Consensus 85 ~ 85 (356)
.
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 3
No 470
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=174.05 Aligned_cols=90 Identities=27% Similarity=0.461 Sum_probs=82.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|+||||||||++||+.++.++.++|+++. .|||++|||.+++..+||++++|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14272 143 KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLV 222 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67889999999999999999999999999999999999999999999888764 8999999999999999999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|..+++
T Consensus 223 G~i~~-~~~~~~~ 234 (252)
T PRK14272 223 GDLVE-HGPTDQL 234 (252)
T ss_pred CEEEE-eCCHHHH
Confidence 99985 4555443
No 471
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.85 E-value=5.5e-21 Score=171.73 Aligned_cols=84 Identities=30% Similarity=0.419 Sum_probs=77.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++ +.|||+||||.+++..+||++++|
T Consensus 136 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 136 IDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 36788999999999999999999999999999999999999988887777654 579999999999999999999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|++..
T Consensus 216 ~~G~i~~ 222 (224)
T cd03220 216 EKGKIRF 222 (224)
T ss_pred ECCEEEe
Confidence 9999864
No 472
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-20 Score=172.29 Aligned_cols=93 Identities=23% Similarity=0.354 Sum_probs=83.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.+++.++ +.|||+||||++++..+||+|++|
T Consensus 137 ~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l 216 (264)
T PRK13546 137 IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI 216 (264)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence 35688999999999999999999999999999999999999988888877654 689999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHH
Q psy2684 79 DMKKLFYYKGNFTLFKK 95 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~ 95 (356)
++|++..+ |+.+.+..
T Consensus 217 ~~G~i~~~-g~~~~~~~ 232 (264)
T PRK13546 217 EGGKLKDY-GELDDVLP 232 (264)
T ss_pred ECCEEEEe-CCHHHHHH
Confidence 99999864 66665543
No 473
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.6e-21 Score=176.34 Aligned_cols=92 Identities=28% Similarity=0.422 Sum_probs=82.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+|||+++
T Consensus 135 ~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~ 214 (283)
T PRK13636 135 KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV 214 (283)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999998877777653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFK 94 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~ 94 (356)
|++|+++. .|+++.+.
T Consensus 215 l~~G~i~~-~g~~~~~~ 230 (283)
T PRK13636 215 MKEGRVIL-QGNPKEVF 230 (283)
T ss_pred EECCEEEE-eCCHHHHh
Confidence 99999975 57776553
No 474
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.85 E-value=6e-21 Score=171.79 Aligned_cols=81 Identities=32% Similarity=0.455 Sum_probs=76.3
Q ss_pred CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeCCeE
Q psy2684 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKL 83 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~g~~ 83 (356)
+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++. .|||+||||++++.++||++++|++|++
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 59999999999999999999999999999999999999999999888763 6999999999999999999999999999
Q ss_pred eEe
Q psy2684 84 FYY 86 (356)
Q Consensus 84 ~~~ 86 (356)
+.+
T Consensus 219 ~~~ 221 (227)
T cd03260 219 VEF 221 (227)
T ss_pred EEe
Confidence 864
No 475
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7e-21 Score=173.88 Aligned_cols=91 Identities=25% Similarity=0.353 Sum_probs=82.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||++++|+
T Consensus 140 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 140 LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 36788999999999999999999999999999999999999999999888765 4799999999999999999999999
Q ss_pred CCeEeEecCCHHHH
Q psy2684 80 MKKLFYYKGNFTLF 93 (356)
Q Consensus 80 ~g~~~~~~g~~~~~ 93 (356)
+|++.. .|+.+++
T Consensus 220 ~G~i~~-~g~~~~~ 232 (250)
T PRK14247 220 KGQIVE-WGPTREV 232 (250)
T ss_pred CCeEEE-ECCHHHH
Confidence 999975 4665544
No 476
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.6e-21 Score=174.18 Aligned_cols=88 Identities=30% Similarity=0.440 Sum_probs=81.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||.+++..+||+|++|++
T Consensus 142 ~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 5788999999999999999999999999999999999999999999888876 57999999999999999999999999
Q ss_pred CeEeEecCCHH
Q psy2684 81 KKLFYYKGNFT 91 (356)
Q Consensus 81 g~~~~~~g~~~ 91 (356)
|++... |..+
T Consensus 222 G~i~~~-~~~~ 231 (251)
T PRK14251 222 GDLIEA-GPTE 231 (251)
T ss_pred CEEEEe-CCHH
Confidence 999865 4443
No 477
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=3.6e-21 Score=160.89 Aligned_cols=94 Identities=31% Similarity=0.446 Sum_probs=80.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ---TWKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.+.++..|||||+||++|||||+++|+++|+||||+.|||+-.-.+...++ +-+.|+++|||.+.|..+++++|+.|
T Consensus 146 ~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fL 225 (256)
T COG4598 146 ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225 (256)
T ss_pred hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEe
Confidence 467899999999999999999999999999999999999998766555544 45789999999999999999999999
Q ss_pred eCCeEeEecCCHHHHHH
Q psy2684 79 DMKKLFYYKGNFTLFKK 95 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~~~ 95 (356)
++|.+.+.+.+-..|..
T Consensus 226 h~G~iEE~G~P~qvf~n 242 (256)
T COG4598 226 HQGKIEEEGPPEQVFGN 242 (256)
T ss_pred ecceecccCChHHHhcC
Confidence 99999874333344433
No 478
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=5.9e-21 Score=172.58 Aligned_cols=89 Identities=31% Similarity=0.339 Sum_probs=79.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~----~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++++||||+||||-|||||+.+|+|||+|||++.|||--+ +.|.++-+++++|||+||||+++..++.|||..|
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 678999999999999999999999999999999999999654 5566666778899999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
.+|+++.. |..++
T Consensus 239 kdG~ivQ~-Gtp~e 251 (386)
T COG4175 239 KDGEIVQV-GTPEE 251 (386)
T ss_pred cCCeEEEe-CCHHH
Confidence 99999975 54443
No 479
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.85 E-value=5e-21 Score=162.89 Aligned_cols=91 Identities=26% Similarity=0.531 Sum_probs=82.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.||.+..+|-|+||||+||+||+++|++||||||||+||..+...+.++++.+ +.+||+.||+++++.++||+|++|
T Consensus 127 ~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivl 206 (245)
T COG4555 127 LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL 206 (245)
T ss_pred HHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE
Confidence 36778899999999999999999999999999999999999999988888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
+.|+++. .|+.+..
T Consensus 207 h~Gevv~-~gs~~~l 220 (245)
T COG4555 207 HKGEVVL-EGSIEAL 220 (245)
T ss_pred ecCcEEE-cCCHHHH
Confidence 9999984 6776543
No 480
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=6.5e-21 Score=171.91 Aligned_cols=90 Identities=22% Similarity=0.360 Sum_probs=81.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++
T Consensus 125 ~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 204 (230)
T TIGR03410 125 LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV 204 (230)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999999998888764 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++. .|+.+.
T Consensus 205 l~~g~i~~-~~~~~~ 218 (230)
T TIGR03410 205 MERGRVVA-SGAGDE 218 (230)
T ss_pred EECCEEEE-ECCHHH
Confidence 99999975 455543
No 481
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3e-21 Score=180.05 Aligned_cols=96 Identities=27% Similarity=0.424 Sum_probs=85.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH----HHHHHHHhcCcEEEEEecChhHHhhhcCEEE
Q psy2684 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~----~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
+.+|.+.+|||||||||+|||||+.+|+++|||||+++||+.-+. ++.++.++++.|+|.||||..++...+|||+
T Consensus 126 lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~ 205 (338)
T COG3839 126 LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV 205 (338)
T ss_pred HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE
Confidence 368999999999999999999999999999999999999998754 4555556678999999999999999999999
Q ss_pred EEeCCeEeEecCCHHHHHHH
Q psy2684 77 HLDMKKLFYYKGNFTLFKKM 96 (356)
Q Consensus 77 ~l~~g~~~~~~g~~~~~~~~ 96 (356)
+|++|++..++.+.+.|.+.
T Consensus 206 Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 206 VMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred EEeCCeeeecCChHHHhhCc
Confidence 99999999987777777553
No 482
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.4e-21 Score=174.86 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=80.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++.++||+|++
T Consensus 141 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~ 220 (265)
T PRK10575 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA 220 (265)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 36788999999999999999999999999999999999999998877777653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++. .|..++
T Consensus 221 l~~G~i~~-~~~~~~ 234 (265)
T PRK10575 221 LRGGEMIA-QGTPAE 234 (265)
T ss_pred EECCeEEE-ecCHHH
Confidence 99999974 455443
No 483
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=7.4e-21 Score=175.23 Aligned_cols=91 Identities=24% Similarity=0.468 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++
T Consensus 144 ~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~ 223 (265)
T TIGR02769 144 ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV 223 (265)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE
Confidence 36788999999999999999999999999999999999999988877777653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+++
T Consensus 224 l~~G~i~~-~g~~~~~ 238 (265)
T TIGR02769 224 MDKGQIVE-ECDVAQL 238 (265)
T ss_pred EeCCEEEE-ECCHHHH
Confidence 99999975 4665443
No 484
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.4e-21 Score=173.71 Aligned_cols=89 Identities=29% Similarity=0.464 Sum_probs=81.3
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14240 141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN 220 (250)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEEC
Confidence 6788999999999999999999999999999999999999999999888765 47999999999999999999999999
Q ss_pred CeEeEecCCHHH
Q psy2684 81 KKLFYYKGNFTL 92 (356)
Q Consensus 81 g~~~~~~g~~~~ 92 (356)
|+++.+ |+.++
T Consensus 221 G~i~~~-~~~~~ 231 (250)
T PRK14240 221 GEIVEF-GDTVD 231 (250)
T ss_pred CEEEEe-CCHHH
Confidence 999865 44443
No 485
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.8e-21 Score=174.41 Aligned_cols=90 Identities=32% Similarity=0.372 Sum_probs=81.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|.++ +.|||+||||++++.++||++++
T Consensus 137 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~ 216 (265)
T PRK10253 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIA 216 (265)
T ss_pred hcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999999988887654 57999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++. .|..++
T Consensus 217 l~~G~i~~-~g~~~~ 230 (265)
T PRK10253 217 LREGKIVA-QGAPKE 230 (265)
T ss_pred EECCEEEE-eCCHHH
Confidence 99999975 455443
No 486
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=2e-21 Score=182.15 Aligned_cols=95 Identities=28% Similarity=0.381 Sum_probs=84.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW----LDNYLQTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~----l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.+|.+++|||||+|||+|||||+.+|+|||||||.++||..-+.. |.++.++.+.|.|+||||.++...++|||++
T Consensus 130 ~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V 209 (352)
T COG3842 130 ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV 209 (352)
T ss_pred hhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE
Confidence 468999999999999999999999999999999999999977654 5566667789999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFKKM 96 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~~~ 96 (356)
|++|+|...+.+.+-|..+
T Consensus 210 m~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 210 MNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred ccCCceeecCCHHHHhhCc
Confidence 9999999876666666553
No 487
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=8.9e-21 Score=169.07 Aligned_cols=85 Identities=32% Similarity=0.385 Sum_probs=78.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++ +.|||+||||.+++.++||++++
T Consensus 122 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~ 201 (213)
T TIGR01277 122 LDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAV 201 (213)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEE
Confidence 36788999999999999999999999999999999999999998887777653 57999999999999999999999
Q ss_pred EeCCeEeEe
Q psy2684 78 LDMKKLFYY 86 (356)
Q Consensus 78 l~~g~~~~~ 86 (356)
|++|++...
T Consensus 202 l~~g~i~~~ 210 (213)
T TIGR01277 202 VSQGKIKVV 210 (213)
T ss_pred EECCeEEEe
Confidence 999999754
No 488
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=9.7e-21 Score=176.33 Aligned_cols=89 Identities=30% Similarity=0.414 Sum_probs=81.2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---C-cEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---K-KTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+||+|||||+.||.||+.+|++|||||||++|||.++..+.++|+++ + .|||++||.++++..+||+|++|
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il 210 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL 210 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE
Confidence 5779999999999999999999999999999999999999999988888765 3 59999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++.++ ..+.
T Consensus 211 ~~G~~~~~g-~~~~ 223 (293)
T COG1131 211 NDGKIIAEG-TPEE 223 (293)
T ss_pred eCCEEEEeC-CHHH
Confidence 999999764 5544
No 489
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.84 E-value=9.4e-21 Score=173.65 Aligned_cols=91 Identities=35% Similarity=0.500 Sum_probs=82.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||+|++|
T Consensus 131 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999999999999999988888765 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|..+++
T Consensus 211 ~~G~i~~-~g~~~~~ 224 (256)
T TIGR03873 211 DGGRVVA-AGPPREV 224 (256)
T ss_pred eCCCEEE-ecCHHHh
Confidence 9999985 4655443
No 490
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.8e-21 Score=173.04 Aligned_cols=88 Identities=24% Similarity=0.443 Sum_probs=80.8
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+|||||+||++||++|+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence 5778999999999999999999999999999999999999999998888876 47999999999999999999999999
Q ss_pred CeEeEecCCHH
Q psy2684 81 KKLFYYKGNFT 91 (356)
Q Consensus 81 g~~~~~~g~~~ 91 (356)
|+++.+ |+.+
T Consensus 222 G~i~~~-~~~~ 231 (251)
T PRK14270 222 GDLIEF-NKTE 231 (251)
T ss_pred CeEEEe-CCHH
Confidence 999875 4443
No 491
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=172.98 Aligned_cols=90 Identities=28% Similarity=0.425 Sum_probs=81.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 143 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 222 (253)
T PRK14267 143 LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLY 222 (253)
T ss_pred hccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEE
Confidence 35788999999999999999999999999999999999999999998888765 3799999999999999999999999
Q ss_pred CCeEeEecCCHHH
Q psy2684 80 MKKLFYYKGNFTL 92 (356)
Q Consensus 80 ~g~~~~~~g~~~~ 92 (356)
+|++... |+.++
T Consensus 223 ~G~i~~~-~~~~~ 234 (253)
T PRK14267 223 LGKLIEV-GPTRK 234 (253)
T ss_pred CCEEEEe-CCHHH
Confidence 9999864 55543
No 492
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=9.6e-21 Score=173.19 Aligned_cols=90 Identities=28% Similarity=0.442 Sum_probs=81.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 5778999999999999999999999999999999999999999888877653 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+++.+
T Consensus 221 ~~G~i~~-~g~~~~~ 234 (252)
T TIGR03005 221 DKGRIVE-QGKPDEI 234 (252)
T ss_pred ECCEEEE-eCCHHHH
Confidence 9999975 4666554
No 493
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.84 E-value=9e-21 Score=169.81 Aligned_cols=80 Identities=39% Similarity=0.627 Sum_probs=74.5
Q ss_pred CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++. .|||+||||.+++ ++||++++|++|+
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~ 215 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGR 215 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCe
Confidence 457999999999999999999999999999999999999999999998764 6999999999987 6999999999999
Q ss_pred EeE
Q psy2684 83 LFY 85 (356)
Q Consensus 83 ~~~ 85 (356)
+..
T Consensus 216 i~~ 218 (220)
T cd03245 216 IVA 218 (220)
T ss_pred Eee
Confidence 864
No 494
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=184.47 Aligned_cols=90 Identities=22% Similarity=0.382 Sum_probs=81.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|
T Consensus 137 ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 36789999999999999999999999999999999999999999888888665 679999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|++..+ |..++
T Consensus 217 ~~GkIv~~-G~~~e 229 (549)
T PRK13545 217 HYGQVKEY-GDIKE 229 (549)
T ss_pred ECCEEEEE-CCHHH
Confidence 99999865 44433
No 495
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.2e-21 Score=172.45 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=80.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.+.++++ +.|||++|||.+++.++||++++|+
T Consensus 132 ~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 132 IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred hCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 5678999999999999999999999999999999999999999888877653 6799999999999999999999999
Q ss_pred CCeEeEecCCHHHH
Q psy2684 80 MKKLFYYKGNFTLF 93 (356)
Q Consensus 80 ~g~~~~~~g~~~~~ 93 (356)
+|+++. .|+.++.
T Consensus 212 ~G~i~~-~~~~~~~ 224 (237)
T PRK11614 212 NGHVVL-EDTGDAL 224 (237)
T ss_pred CCEEEe-eCCHHHH
Confidence 999975 4665443
No 496
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=1.3e-20 Score=172.61 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=80.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++.+.++|+++ +.|||+||||.+++.++||++++|
T Consensus 135 ~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 135 KLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred hcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence 6788999999999999999999999999999999999999998887777653 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|++.. .|+.+.+
T Consensus 215 ~~G~i~~-~~~~~~~ 228 (254)
T PRK10418 215 SHGRIVE-QGDVETL 228 (254)
T ss_pred ECCEEEE-ecCHHHH
Confidence 9999975 4655544
No 497
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=174.82 Aligned_cols=92 Identities=26% Similarity=0.428 Sum_probs=82.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++.+.+|||||+||++||++|+.+|++|||||||++||+.+++.+.++++++ +.|||++|||.+++.++||+|++
T Consensus 131 ~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~ 210 (277)
T PRK13652 131 RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV 210 (277)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 36789999999999999999999999999999999999999999988877653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHHH
Q psy2684 78 LDMKKLFYYKGNFTLFK 94 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~~ 94 (356)
|++|+++. .|+.+++.
T Consensus 211 l~~G~i~~-~g~~~~~~ 226 (277)
T PRK13652 211 MDKGRIVA-YGTVEEIF 226 (277)
T ss_pred EECCeEEE-ECCHHHHh
Confidence 99999985 47666553
No 498
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=182.20 Aligned_cols=91 Identities=30% Similarity=0.372 Sum_probs=81.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence 46789999999999999999999999999999999999999999888877653 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+.+
T Consensus 238 L~~G~i~~-~g~~~~l 252 (400)
T PRK10070 238 MQNGEVVQ-VGTPDEI 252 (400)
T ss_pred EECCEEEe-cCCHHHH
Confidence 99999975 4555444
No 499
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.84 E-value=9e-21 Score=170.76 Aligned_cols=82 Identities=32% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++ +.|||+||||.+++.. ||++++|
T Consensus 141 ~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l 219 (228)
T PRK10584 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRL 219 (228)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEE
Confidence 5788999999999999999999999999999999999999999998888653 6799999999999855 9999999
Q ss_pred eCCeEeE
Q psy2684 79 DMKKLFY 85 (356)
Q Consensus 79 ~~g~~~~ 85 (356)
++|+++.
T Consensus 220 ~~g~i~~ 226 (228)
T PRK10584 220 VNGQLQE 226 (228)
T ss_pred ECCEEEe
Confidence 9999864
No 500
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=172.52 Aligned_cols=89 Identities=28% Similarity=0.400 Sum_probs=81.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||.+++..+||++++|+
T Consensus 141 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 141 LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL 220 (251)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence 36788999999999999999999999999999999999999999998888765 4799999999999999999999999
Q ss_pred CCeEeEecCCHH
Q psy2684 80 MKKLFYYKGNFT 91 (356)
Q Consensus 80 ~g~~~~~~g~~~ 91 (356)
+|++..+ |+.+
T Consensus 221 ~G~i~~~-~~~~ 231 (251)
T PRK14249 221 TGDLVEY-GRTG 231 (251)
T ss_pred CCeEEEe-CCHH
Confidence 9999865 5443
Done!