Query psy2684
Match_columns 356
No_of_seqs 309 out of 3420
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 1.8E-47 6.2E-52 399.6 22.0 191 3-241 543-734 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 5E-47 1.7E-51 379.6 19.4 256 2-356 152-417 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 5.1E-46 1.8E-50 376.1 22.2 256 2-356 222-487 (607)
4 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-45 4.5E-50 368.6 18.8 262 2-356 132-401 (538)
5 3j16_B RLI1P; ribosome recycli 100.0 2.1E-42 7.2E-47 349.2 24.1 256 2-356 215-483 (608)
6 3g5u_A MCG1178, multidrug resi 100.0 3.9E-41 1.3E-45 366.6 18.1 144 178-356 1029-1187(1284)
7 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-39 5.4E-44 334.4 22.8 163 2-227 196-369 (670)
8 3pih_A Uvrabc system protein A 100.0 7.5E-38 2.6E-42 326.8 19.1 159 2-223 458-627 (916)
9 2ygr_A Uvrabc system protein A 100.0 1.1E-37 3.9E-42 324.6 20.2 164 2-227 515-689 (993)
10 2vf7_A UVRA2, excinuclease ABC 100.0 1.6E-37 5.4E-42 321.9 19.6 165 2-231 373-549 (842)
11 2r6f_A Excinuclease ABC subuni 100.0 1.9E-37 6.6E-42 321.8 19.4 163 2-227 498-671 (972)
12 4f4c_A Multidrug resistance pr 100.0 8.7E-36 3E-40 325.3 27.6 143 179-356 1076-1233(1321)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 5E-31 1.7E-35 249.5 11.4 144 179-356 4-154 (359)
14 3gfo_A Cobalt import ATP-bindi 100.0 3.5E-31 1.2E-35 243.2 8.3 148 177-356 5-159 (275)
15 3tif_A Uncharacterized ABC tra 100.0 4.5E-31 1.5E-35 237.6 8.6 148 179-356 1-161 (235)
16 3tui_C Methionine import ATP-b 100.0 5.7E-31 2E-35 249.3 9.1 150 175-356 20-179 (366)
17 3rlf_A Maltose/maltodextrin im 100.0 2.5E-30 8.5E-35 246.4 11.6 140 179-356 3-149 (381)
18 2pcj_A ABC transporter, lipopr 100.0 2.3E-30 8E-35 231.3 10.5 147 178-356 3-156 (224)
19 2olj_A Amino acid ABC transpor 100.0 4.8E-30 1.7E-34 234.2 11.6 145 178-356 23-175 (263)
20 1z47_A CYSA, putative ABC-tran 100.0 2.7E-30 9.2E-35 244.6 10.2 144 176-356 11-161 (355)
21 2yyz_A Sugar ABC transporter, 100.0 5.6E-30 1.9E-34 242.9 11.6 140 179-356 3-149 (359)
22 4g1u_C Hemin import ATP-bindin 100.0 4.3E-30 1.5E-34 235.1 10.2 144 177-356 9-157 (266)
23 1sgw_A Putative ABC transporte 100.0 1E-29 3.5E-34 225.1 12.1 136 178-356 9-149 (214)
24 1b0u_A Histidine permease; ABC 100.0 5.7E-30 1.9E-34 234.0 9.6 156 178-356 5-169 (262)
25 2it1_A 362AA long hypothetical 100.0 7.7E-30 2.6E-34 242.2 10.9 140 179-356 3-149 (362)
26 1oxx_K GLCV, glucose, ABC tran 100.0 6.1E-30 2.1E-34 242.6 10.0 145 179-356 3-156 (353)
27 1vpl_A ABC transporter, ATP-bi 100.0 9.6E-30 3.3E-34 231.4 9.7 143 177-356 13-162 (256)
28 1v43_A Sugar-binding transport 100.0 9.8E-30 3.3E-34 242.4 9.9 140 179-356 11-157 (372)
29 1ji0_A ABC transporter; ATP bi 100.0 5.9E-30 2E-34 231.0 7.7 145 177-356 4-155 (240)
30 1g6h_A High-affinity branched- 100.0 3.9E-30 1.3E-34 234.5 6.5 144 178-356 6-169 (257)
31 1g29_1 MALK, maltose transport 100.0 1.1E-29 3.6E-34 242.5 9.6 146 179-356 3-155 (372)
32 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-29 5.5E-34 239.0 10.1 139 179-356 1-143 (348)
33 2ihy_A ABC transporter, ATP-bi 100.0 1E-29 3.6E-34 234.0 7.7 149 176-356 18-177 (279)
34 2onk_A Molybdate/tungstate ABC 100.0 8.6E-29 2.9E-33 223.1 10.8 137 179-356 1-142 (240)
35 1mv5_A LMRA, multidrug resista 100.0 5.2E-29 1.8E-33 225.2 9.3 143 179-356 1-155 (243)
36 2yz2_A Putative ABC transporte 100.0 1.1E-28 3.7E-33 226.1 10.5 141 179-356 2-154 (266)
37 2ff7_A Alpha-hemolysin translo 99.9 1.1E-28 3.7E-33 223.6 7.5 142 180-356 8-161 (247)
38 3nh6_A ATP-binding cassette SU 99.9 8.1E-29 2.8E-33 230.4 6.3 143 178-356 52-206 (306)
39 2zu0_C Probable ATP-dependent 99.9 1.4E-28 4.7E-33 225.4 7.1 146 177-356 18-180 (267)
40 2nq2_C Hypothetical ABC transp 99.9 4.6E-28 1.6E-32 220.1 10.3 130 179-356 4-144 (253)
41 2ixe_A Antigen peptide transpo 99.9 2.2E-28 7.7E-33 224.4 7.8 143 178-356 15-172 (271)
42 2d2e_A SUFC protein; ABC-ATPas 99.9 2.1E-28 7.1E-33 222.2 6.6 143 179-356 3-159 (250)
43 2qi9_C Vitamin B12 import ATP- 99.9 4.6E-28 1.6E-32 219.5 8.1 137 179-356 4-142 (249)
44 2pjz_A Hypothetical protein ST 99.9 8.5E-28 2.9E-32 219.3 9.5 136 179-356 1-144 (263)
45 3gd7_A Fusion complex of cysti 99.9 3.3E-28 1.1E-32 233.2 6.5 142 178-356 18-171 (390)
46 2pze_A Cystic fibrosis transme 99.9 1.7E-27 6E-32 213.3 10.8 131 178-356 5-146 (229)
47 2cbz_A Multidrug resistance-as 99.9 1.9E-27 6.6E-32 214.1 8.7 130 179-356 3-143 (237)
48 2ghi_A Transport protein; mult 99.9 2.7E-27 9.1E-32 216.0 7.6 143 178-356 16-171 (260)
49 3b5x_A Lipid A export ATP-bind 99.9 5.2E-26 1.8E-30 230.2 10.3 144 178-356 340-496 (582)
50 3b60_A Lipid A export ATP-bind 99.9 4.8E-26 1.6E-30 230.4 8.4 144 178-356 340-496 (582)
51 2yl4_A ATP-binding cassette SU 99.9 1.3E-25 4.6E-30 227.7 8.5 142 180-356 342-499 (595)
52 4a82_A Cystic fibrosis transme 99.9 1.7E-25 5.7E-30 226.2 8.8 144 178-356 338-493 (578)
53 3qf4_B Uncharacterized ABC tra 99.9 1.2E-25 4.1E-30 228.0 7.3 143 179-356 354-507 (598)
54 2bbs_A Cystic fibrosis transme 99.9 1.9E-25 6.4E-30 206.5 7.8 127 178-356 39-175 (290)
55 3qf4_A ABC transporter, ATP-bi 99.9 5.9E-25 2E-29 222.4 8.6 143 178-356 340-495 (587)
56 3gfo_A Cobalt import ATP-bindi 99.9 8.8E-24 3E-28 193.9 12.6 91 2-93 137-231 (275)
57 3tui_C Methionine import ATP-b 99.9 1E-23 3.6E-28 199.5 12.8 90 2-92 157-250 (366)
58 2onk_A Molybdate/tungstate ABC 99.9 1.4E-23 4.6E-28 189.1 11.9 91 2-93 120-214 (240)
59 2olj_A Amino acid ABC transpor 99.9 1.8E-23 6.2E-28 190.6 12.8 91 2-93 153-246 (263)
60 3tif_A Uncharacterized ABC tra 99.9 1.6E-23 5.4E-28 188.2 12.1 83 3-86 140-226 (235)
61 1b0u_A Histidine permease; ABC 99.9 1.9E-23 6.7E-28 190.6 12.0 91 2-93 147-240 (262)
62 2pcj_A ABC transporter, lipopr 99.9 2.3E-23 8E-28 185.8 12.2 84 2-86 134-220 (224)
63 1ji0_A ABC transporter; ATP bi 99.9 3.1E-23 1E-27 187.0 12.8 91 2-93 133-226 (240)
64 1g6h_A High-affinity branched- 99.9 1.6E-23 5.6E-28 190.7 11.0 90 2-92 147-239 (257)
65 3fvq_A Fe(3+) IONS import ATP- 99.9 3E-23 1E-27 196.3 12.6 89 2-91 132-224 (359)
66 2nq2_C Hypothetical ABC transp 99.9 2.7E-23 9.3E-28 188.7 11.6 89 2-92 122-214 (253)
67 3rlf_A Maltose/maltodextrin im 99.9 2.9E-23 1E-27 197.7 12.3 87 2-88 127-217 (381)
68 4g1u_C Hemin import ATP-bindin 99.9 2.4E-23 8.3E-28 190.3 11.2 90 2-92 135-234 (266)
69 1z47_A CYSA, putative ABC-tran 99.9 4.9E-23 1.7E-27 194.8 12.6 89 2-91 139-231 (355)
70 2yyz_A Sugar ABC transporter, 99.9 6.5E-23 2.2E-27 194.4 12.9 89 2-91 127-219 (359)
71 3d31_A Sulfate/molybdate ABC t 99.9 5.1E-23 1.7E-27 194.5 12.1 89 2-91 121-213 (348)
72 1vpl_A ABC transporter, ATP-bi 99.9 6.4E-23 2.2E-27 186.4 12.1 91 2-93 140-233 (256)
73 2pjz_A Hypothetical protein ST 99.9 6.7E-23 2.3E-27 186.9 12.1 88 2-90 122-210 (263)
74 2it1_A 362AA long hypothetical 99.9 5.7E-23 1.9E-27 195.0 11.9 89 2-91 127-219 (362)
75 1oxx_K GLCV, glucose, ABC tran 99.9 5.3E-23 1.8E-27 195.0 11.6 89 2-91 134-226 (353)
76 1g29_1 MALK, maltose transport 99.9 8.4E-23 2.9E-27 194.8 12.7 89 2-91 133-225 (372)
77 2yz2_A Putative ABC transporte 99.9 8.4E-23 2.9E-27 186.8 11.8 90 2-92 132-224 (266)
78 2ihy_A ABC transporter, ATP-bi 99.9 5.7E-23 2E-27 189.0 10.2 90 2-92 155-249 (279)
79 1v43_A Sugar-binding transport 99.9 8.7E-23 3E-27 194.4 11.7 89 2-91 135-227 (372)
80 2zu0_C Probable ATP-dependent 99.9 1.6E-22 5.5E-27 185.0 12.3 89 2-91 157-250 (267)
81 2d2e_A SUFC protein; ABC-ATPas 99.9 7.5E-23 2.6E-27 185.5 9.9 89 2-91 136-229 (250)
82 2qi9_C Vitamin B12 import ATP- 99.9 1.2E-22 4.2E-27 183.8 10.8 90 2-92 120-219 (249)
83 2ixe_A Antigen peptide transpo 99.9 2.6E-22 9E-27 184.0 13.1 90 2-93 150-243 (271)
84 2ff7_A Alpha-hemolysin translo 99.9 2.7E-22 9.4E-27 181.4 12.5 89 3-93 140-230 (247)
85 4f4c_A Multidrug resistance pr 99.9 4E-23 1.4E-27 225.7 8.1 142 179-356 415-570 (1321)
86 3g5u_A MCG1178, multidrug resi 99.9 6.2E-23 2.1E-27 223.7 9.0 142 179-356 387-542 (1284)
87 3nh6_A ATP-binding cassette SU 99.9 6.1E-22 2.1E-26 184.1 13.1 90 3-94 185-276 (306)
88 2ghi_A Transport protein; mult 99.9 8.9E-22 3E-26 179.4 13.1 89 3-93 150-240 (260)
89 1mv5_A LMRA, multidrug resista 99.9 3.5E-22 1.2E-26 180.4 9.0 89 3-93 134-224 (243)
90 2pze_A Cystic fibrosis transme 99.9 1.3E-21 4.4E-26 175.1 12.2 88 4-93 126-216 (229)
91 2cbz_A Multidrug resistance-as 99.9 1E-21 3.6E-26 176.6 11.2 89 3-93 122-215 (237)
92 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.1E-20 3.9E-25 157.2 11.7 80 3-83 52-142 (148)
93 3j16_B RLI1P; ribosome recycli 99.8 5.7E-21 1.9E-25 192.9 11.1 89 2-91 461-555 (608)
94 3ozx_A RNAse L inhibitor; ATP 99.8 5.7E-21 1.9E-25 190.7 10.4 79 2-80 379-461 (538)
95 2bbs_A Cystic fibrosis transme 99.8 1.6E-20 5.5E-25 173.5 12.6 88 4-93 155-245 (290)
96 2iw3_A Elongation factor 3A; a 99.8 2.9E-21 1E-25 202.2 8.2 88 3-90 896-983 (986)
97 1yqt_A RNAse L inhibitor; ATP- 99.8 1.1E-20 3.8E-25 188.9 11.5 89 2-91 395-489 (538)
98 3gd7_A Fusion complex of cysti 99.8 7.4E-21 2.5E-25 182.2 9.5 81 9-91 156-238 (390)
99 3bk7_A ABC transporter ATP-bin 99.8 2.1E-20 7.2E-25 189.0 11.8 89 2-91 465-559 (607)
100 3qf4_A ABC transporter, ATP-bi 99.8 7.7E-20 2.6E-24 184.9 14.5 91 3-95 474-566 (587)
101 1sgw_A Putative ABC transporte 99.8 3.6E-21 1.2E-25 170.2 2.6 76 3-78 128-206 (214)
102 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 6.7E-20 2.3E-24 175.0 10.6 81 3-84 274-363 (365)
103 3b5x_A Lipid A export ATP-bind 99.8 1.3E-19 4.6E-24 183.2 13.0 88 4-93 476-565 (582)
104 4a82_A Cystic fibrosis transme 99.8 1.1E-19 3.7E-24 183.6 12.0 89 4-94 473-563 (578)
105 1tf7_A KAIC; homohexamer, hexa 99.8 2.5E-20 8.7E-25 186.3 7.2 162 15-233 126-308 (525)
106 3b60_A Lipid A export ATP-bind 99.8 1.4E-19 4.6E-24 183.1 12.6 89 3-93 475-565 (582)
107 3qf4_B Uncharacterized ABC tra 99.8 1.6E-19 5.4E-24 183.1 12.6 86 7-94 490-577 (598)
108 2yl4_A ATP-binding cassette SU 99.8 2.5E-19 8.6E-24 181.6 12.7 86 5-92 480-567 (595)
109 3ux8_A Excinuclease ABC, A sub 99.8 3.8E-19 1.3E-23 182.7 13.1 89 3-93 538-638 (670)
110 3pih_A Uvrabc system protein A 99.8 6.9E-19 2.4E-23 184.1 12.4 90 2-93 799-900 (916)
111 4aby_A DNA repair protein RECN 99.8 2.3E-18 7.9E-23 167.0 11.8 82 4-86 290-380 (415)
112 2vf7_A UVRA2, excinuclease ABC 99.8 1.6E-18 5.3E-23 180.0 10.6 91 2-94 724-826 (842)
113 3kta_B Chromosome segregation 99.7 7.6E-18 2.6E-22 143.7 11.3 93 3-96 59-159 (173)
114 2ygr_A Uvrabc system protein A 99.7 5.5E-18 1.9E-22 177.0 12.0 91 2-94 857-959 (993)
115 2r6f_A Excinuclease ABC subuni 99.7 5.5E-18 1.9E-22 176.4 11.5 91 2-94 839-941 (972)
116 2npi_A Protein CLP1; CLP1-PCF1 99.7 1E-20 3.5E-25 185.3 -10.8 127 177-354 116-249 (460)
117 3qkt_A DNA double-strand break 99.7 5E-17 1.7E-21 153.7 10.6 76 3-79 243-327 (339)
118 1e69_A Chromosome segregation 99.7 1E-16 3.4E-21 150.5 11.2 88 3-91 214-309 (322)
119 4ad8_A DNA repair protein RECN 99.6 2.3E-16 7.7E-21 157.4 9.3 78 3-81 391-473 (517)
120 1ye8_A Protein THEP1, hypothet 99.6 1.5E-16 5.1E-21 136.6 5.8 72 3-74 71-152 (178)
121 2o5v_A DNA replication and rep 99.6 4.6E-16 1.6E-20 147.6 8.1 83 3-90 259-351 (359)
122 2v9p_A Replication protein E1; 99.6 1.5E-18 5E-23 160.9 -10.5 56 179-239 101-156 (305)
123 3b85_A Phosphate starvation-in 99.6 2.3E-17 7.9E-22 145.1 -5.6 43 191-238 11-53 (208)
124 2npi_A Protein CLP1; CLP1-PCF1 99.6 5.2E-16 1.8E-20 151.9 3.3 84 6-92 233-335 (460)
125 3aez_A Pantothenate kinase; tr 99.6 8.7E-18 3E-22 156.8 -9.6 121 178-355 42-191 (312)
126 3auy_A DNA double-strand break 99.6 8.1E-15 2.8E-19 140.1 10.3 76 4-80 276-360 (371)
127 1tq4_A IIGP1, interferon-induc 99.5 9E-17 3.1E-21 154.9 -4.5 114 193-355 36-171 (413)
128 1z6g_A Guanylate kinase; struc 99.5 3.7E-17 1.3E-21 144.9 -6.9 47 194-244 11-57 (218)
129 3sop_A Neuronal-specific septi 99.5 3.9E-18 1.3E-22 156.1 -13.7 106 208-355 4-113 (270)
130 1w1w_A Structural maintenance 99.5 4.2E-14 1.4E-18 137.8 10.9 75 4-79 329-410 (430)
131 2dpy_A FLII, flagellum-specifi 99.5 1.1E-15 3.8E-20 148.8 -2.9 64 178-242 130-193 (438)
132 4gp7_A Metallophosphoesterase; 99.5 1.3E-14 4.5E-19 123.5 3.1 66 6-71 81-165 (171)
133 4aby_A DNA repair protein RECN 99.5 6.5E-14 2.2E-18 135.6 7.5 40 194-234 49-88 (415)
134 3b9q_A Chloroplast SRP recepto 99.4 1.9E-15 6.6E-20 140.3 -4.0 126 196-356 90-217 (302)
135 1htw_A HI0065; nucleotide-bind 99.4 6.8E-15 2.3E-19 123.7 -3.2 62 181-244 9-70 (158)
136 1p9r_A General secretion pathw 99.4 1.6E-15 5.3E-20 146.7 -8.8 141 179-355 143-306 (418)
137 2rcn_A Probable GTPase ENGC; Y 99.4 9.1E-14 3.1E-18 131.3 3.2 118 195-355 205-328 (358)
138 2jeo_A Uridine-cytidine kinase 99.4 3.2E-14 1.1E-18 128.1 -0.1 109 191-351 10-127 (245)
139 2og2_A Putative signal recogni 99.4 1.1E-14 3.8E-19 137.9 -3.3 125 197-356 148-274 (359)
140 4gp7_A Metallophosphoesterase; 99.4 1.1E-13 3.8E-18 117.7 3.2 31 198-228 1-31 (171)
141 2obl_A ESCN; ATPase, hydrolase 99.4 4E-14 1.4E-18 133.8 -0.2 65 178-243 44-108 (347)
142 2pt7_A CAG-ALFA; ATPase, prote 99.4 8.4E-14 2.9E-18 130.9 1.3 50 194-243 159-208 (330)
143 1ye8_A Protein THEP1, hypothet 99.3 9.9E-14 3.4E-18 118.9 -2.2 30 208-242 2-31 (178)
144 2yv5_A YJEQ protein; hydrolase 99.3 1.6E-13 5.3E-18 127.6 -2.0 119 201-353 160-300 (302)
145 1tf7_A KAIC; homohexamer, hexa 99.3 1.9E-12 6.5E-17 129.2 4.6 80 2-82 347-444 (525)
146 3b85_A Phosphate starvation-in 99.2 5.5E-13 1.9E-17 117.1 -2.6 54 12-70 108-163 (208)
147 2gza_A Type IV secretion syste 99.2 3.9E-12 1.3E-16 121.0 2.2 138 181-353 137-300 (361)
148 1rj9_A FTSY, signal recognitio 99.2 5.9E-13 2E-17 123.6 -4.5 116 205-356 101-218 (304)
149 1u0l_A Probable GTPase ENGC; p 99.1 9.2E-13 3.1E-17 122.3 -4.4 110 201-343 164-294 (301)
150 2qnr_A Septin-2, protein NEDD5 99.1 5.5E-14 1.9E-18 130.5 -13.3 54 183-244 2-56 (301)
151 1pui_A ENGB, probable GTP-bind 99.1 2.9E-12 1E-16 111.7 -2.1 58 179-240 3-65 (210)
152 1e69_A Chromosome segregation 99.1 1.6E-10 5.3E-15 108.2 9.1 32 198-230 17-48 (322)
153 2f1r_A Molybdopterin-guanine d 99.1 6.9E-13 2.4E-17 112.8 -6.7 38 207-244 3-43 (171)
154 3euj_A Chromosome partition pr 99.1 3E-11 1E-15 118.3 3.5 51 194-245 18-68 (483)
155 1zp6_A Hypothetical protein AT 99.1 3.5E-13 1.2E-17 116.1 -9.1 41 202-244 5-45 (191)
156 2eyu_A Twitching motility prot 99.1 1.9E-11 6.3E-16 111.1 0.8 61 179-246 5-66 (261)
157 3asz_A Uridine kinase; cytidin 99.1 7.6E-12 2.6E-16 109.5 -1.8 98 203-355 3-108 (211)
158 2qm8_A GTPase/ATPase; G protei 99.0 8.9E-12 3.1E-16 117.4 -2.9 66 179-245 29-94 (337)
159 1in4_A RUVB, holliday junction 99.0 1.2E-12 3.9E-17 123.4 -9.2 134 180-352 19-174 (334)
160 3qf7_A RAD50; ABC-ATPase, ATPa 99.0 5.9E-11 2E-15 113.0 1.8 34 195-229 13-46 (365)
161 1t9h_A YLOQ, probable GTPase E 99.0 2.8E-11 9.7E-16 112.1 -2.8 112 201-347 168-302 (307)
162 1sq5_A Pantothenate kinase; P- 99.0 3.2E-11 1.1E-15 112.2 -2.5 64 178-244 36-123 (308)
163 1cr0_A DNA primase/helicase; R 98.9 2.9E-09 9.8E-14 98.1 8.5 75 7-82 128-236 (296)
164 2o8b_B DNA mismatch repair pro 98.9 9.8E-11 3.3E-15 124.5 -2.2 55 177-232 748-814 (1022)
165 3thx_A DNA mismatch repair pro 98.9 2.5E-09 8.4E-14 112.6 7.9 81 4-85 717-804 (934)
166 2i3b_A HCR-ntpase, human cance 98.8 1.8E-10 6E-15 99.5 -1.6 83 5-91 80-174 (189)
167 1tq4_A IIGP1, interferon-induc 98.8 5.3E-11 1.8E-15 114.6 -6.2 68 9-76 155-248 (413)
168 3szr_A Interferon-induced GTP- 98.8 1.2E-10 4.1E-15 118.0 -4.2 98 179-310 10-119 (608)
169 2yhs_A FTSY, cell division pro 98.8 1.1E-09 3.7E-14 107.1 2.1 49 196-244 283-331 (503)
170 3lnc_A Guanylate kinase, GMP k 98.8 2.3E-09 7.7E-14 95.2 2.9 37 194-230 15-52 (231)
171 1znw_A Guanylate kinase, GMP k 98.8 2E-09 6.8E-14 94.0 2.3 36 194-231 10-45 (207)
172 1qhl_A Protein (cell division 98.8 1.9E-10 6.4E-15 102.1 -4.4 57 179-244 9-65 (227)
173 2w0m_A SSO2452; RECA, SSPF, un 98.7 1.2E-08 4.2E-13 89.7 7.0 75 8-82 103-193 (235)
174 2i3b_A HCR-ntpase, human cance 98.7 3.7E-09 1.3E-13 91.1 3.3 37 206-244 1-37 (189)
175 3tr0_A Guanylate kinase, GMP k 98.7 2E-09 7E-14 93.3 1.5 40 200-243 1-40 (205)
176 2qag_B Septin-6, protein NEDD5 98.7 1.8E-09 6.1E-14 104.0 1.1 48 180-230 17-66 (427)
177 2pt7_A CAG-ALFA; ATPase, prote 98.7 1.1E-09 3.8E-14 102.7 -0.7 67 11-82 225-291 (330)
178 3thx_B DNA mismatch repair pro 98.7 1.8E-08 6.1E-13 105.8 7.7 64 4-68 731-799 (918)
179 3nwj_A ATSK2; P loop, shikimat 98.7 1.5E-09 5.1E-14 97.8 -0.7 53 178-230 16-72 (250)
180 1ls1_A Signal recognition part 98.7 9.8E-11 3.3E-15 108.2 -8.9 47 197-245 91-137 (295)
181 1ewq_A DNA mismatch repair pro 98.7 4.5E-09 1.5E-13 108.6 2.3 56 179-237 550-608 (765)
182 2o8b_B DNA mismatch repair pro 98.7 2.4E-08 8.1E-13 106.3 7.7 78 5-84 848-930 (1022)
183 1s96_A Guanylate kinase, GMP k 98.7 5E-09 1.7E-13 92.5 1.8 43 201-243 11-55 (219)
184 3b9q_A Chloroplast SRP recepto 98.6 5.6E-09 1.9E-13 96.7 1.8 74 4-83 200-284 (302)
185 2ehv_A Hypothetical protein PH 98.6 7E-09 2.4E-13 92.5 2.4 58 180-242 7-68 (251)
186 1znw_A Guanylate kinase, GMP k 98.6 3E-10 1E-14 99.2 -6.5 71 9-79 121-202 (207)
187 2ehv_A Hypothetical protein PH 98.6 2.8E-08 9.4E-13 88.6 5.3 71 10-80 119-207 (251)
188 2oap_1 GSPE-2, type II secreti 98.6 7.9E-09 2.7E-13 102.3 1.6 50 194-243 248-297 (511)
189 2qag_C Septin-7; cell cycle, c 98.6 1.6E-08 5.6E-13 97.5 3.4 51 178-235 10-60 (418)
190 1ewq_A DNA mismatch repair pro 98.6 4.5E-08 1.6E-12 101.1 6.6 64 6-69 633-702 (765)
191 1cr0_A DNA primase/helicase; R 98.6 1.2E-08 4.1E-13 93.9 1.8 49 193-241 22-71 (296)
192 1htw_A HI0065; nucleotide-bind 98.6 1.4E-08 4.9E-13 84.9 1.7 68 238-309 22-95 (158)
193 2og2_A Putative signal recogni 98.6 2E-08 7E-13 94.9 2.9 74 4-83 257-341 (359)
194 3uie_A Adenylyl-sulfate kinase 98.6 6.7E-09 2.3E-13 90.1 -0.5 61 183-245 3-65 (200)
195 2ewv_A Twitching motility prot 98.5 1.4E-08 4.6E-13 96.9 1.5 59 195-255 127-186 (372)
196 3e70_C DPA, signal recognition 98.5 2.1E-08 7.3E-13 93.8 2.3 44 202-245 125-168 (328)
197 4a74_A DNA repair and recombin 98.5 8.7E-09 3E-13 90.7 -0.6 31 202-232 21-51 (231)
198 3thx_B DNA mismatch repair pro 98.5 1.2E-08 4E-13 107.2 0.1 38 192-229 659-696 (918)
199 1nlf_A Regulatory protein REPA 98.5 1.7E-07 5.8E-12 85.5 7.9 64 3-69 113-185 (279)
200 1udx_A The GTP-binding protein 98.5 1.1E-08 3.8E-13 98.6 -0.2 36 196-231 147-182 (416)
201 1lw7_A Transcriptional regulat 98.5 8.7E-09 3E-13 97.9 -1.1 46 195-240 157-208 (365)
202 4a74_A DNA repair and recombin 98.5 7.5E-08 2.6E-12 84.6 5.0 57 25-81 124-200 (231)
203 2cvh_A DNA repair and recombin 98.5 2.6E-07 9E-12 80.5 8.4 75 7-81 83-185 (220)
204 1lvg_A Guanylate kinase, GMP k 98.5 2.6E-08 8.8E-13 86.4 1.4 28 204-231 2-29 (198)
205 3c8u_A Fructokinase; YP_612366 98.5 2.1E-08 7E-13 87.6 0.4 42 203-244 19-63 (208)
206 3kta_A Chromosome segregation 98.4 8.8E-08 3E-12 81.4 3.5 40 197-237 18-57 (182)
207 2eyu_A Twitching motility prot 98.4 6.9E-08 2.4E-12 87.4 2.7 59 16-79 88-146 (261)
208 3jvv_A Twitching mobility prot 98.4 7.9E-08 2.7E-12 90.9 3.0 43 202-244 119-162 (356)
209 3a00_A Guanylate kinase, GMP k 98.4 5.7E-08 2E-12 83.2 1.8 26 206-231 1-26 (186)
210 1nlf_A Regulatory protein REPA 98.4 2.1E-07 7.2E-12 84.9 5.1 102 202-350 26-128 (279)
211 2w0m_A SSO2452; RECA, SSPF, un 98.4 9E-08 3.1E-12 84.1 2.2 52 192-243 8-60 (235)
212 2v9p_A Replication protein E1; 98.4 1.5E-09 5.2E-14 100.3 -9.6 67 6-93 198-264 (305)
213 1nij_A Hypothetical protein YJ 98.3 2.3E-07 7.9E-12 86.4 4.1 39 207-245 5-51 (318)
214 1z6g_A Guanylate kinase; struc 98.3 2.5E-09 8.7E-14 94.3 -10.3 45 8-52 122-171 (218)
215 4e22_A Cytidylate kinase; P-lo 98.3 8E-08 2.7E-12 86.5 -0.8 41 204-244 25-76 (252)
216 3sop_A Neuronal-specific septi 98.3 7.7E-08 2.6E-12 87.5 -1.1 59 5-68 95-153 (270)
217 4eun_A Thermoresistant glucoki 98.2 3.2E-07 1.1E-11 79.3 2.6 40 201-244 24-63 (200)
218 2j41_A Guanylate kinase; GMP, 98.2 2.5E-07 8.4E-12 80.0 1.8 35 201-235 1-35 (207)
219 3jvv_A Twitching mobility prot 98.2 2.5E-07 8.5E-12 87.5 1.9 57 18-79 188-244 (356)
220 2bdt_A BH3686; alpha-beta prot 98.2 2.3E-07 7.8E-12 79.3 0.9 37 206-245 2-38 (189)
221 3tqc_A Pantothenate kinase; bi 98.2 9.6E-08 3.3E-12 88.9 -1.7 60 183-243 64-131 (321)
222 2x8a_A Nuclear valosin-contain 98.2 2.5E-07 8.5E-12 84.3 0.9 48 193-244 33-80 (274)
223 1pzn_A RAD51, DNA repair and r 98.2 9.3E-07 3.2E-11 83.4 4.7 75 10-84 208-305 (349)
224 2bbw_A Adenylate kinase 4, AK4 98.2 1.5E-07 5.1E-12 84.2 -0.8 38 205-242 26-66 (246)
225 1ixz_A ATP-dependent metallopr 98.2 1.1E-07 3.7E-12 85.4 -2.1 60 180-244 26-85 (254)
226 1iy2_A ATP-dependent metallopr 98.2 1.2E-07 4.3E-12 86.3 -2.1 60 180-244 50-109 (278)
227 2vp4_A Deoxynucleoside kinase; 98.1 8E-07 2.7E-11 78.7 2.9 42 199-244 13-54 (230)
228 1zu4_A FTSY; GTPase, signal re 98.1 6.3E-07 2.2E-11 83.5 2.2 49 196-244 95-143 (320)
229 3vaa_A Shikimate kinase, SK; s 98.1 5.5E-07 1.9E-11 77.8 1.6 38 193-230 12-49 (199)
230 1kgd_A CASK, peripheral plasma 98.1 5.8E-07 2E-11 76.4 1.7 34 205-238 4-38 (180)
231 3thx_A DNA mismatch repair pro 98.1 7.4E-07 2.5E-11 93.9 2.7 44 192-235 648-699 (934)
232 1wb9_A DNA mismatch repair pro 98.1 1.3E-06 4.3E-11 90.9 4.3 74 6-81 667-745 (800)
233 1rz3_A Hypothetical protein rb 98.1 7.1E-07 2.4E-11 77.3 1.9 43 202-244 18-60 (201)
234 3ec2_A DNA replication protein 98.1 4.5E-07 1.6E-11 76.9 0.5 37 200-236 32-68 (180)
235 1pzn_A RAD51, DNA repair and r 98.1 7.4E-07 2.5E-11 84.0 1.7 51 193-243 117-175 (349)
236 3aez_A Pantothenate kinase; tr 98.1 3.9E-08 1.3E-12 91.4 -7.1 60 4-68 172-231 (312)
237 1wb9_A DNA mismatch repair pro 98.1 9.5E-07 3.2E-11 91.8 2.6 39 192-231 594-632 (800)
238 2yhs_A FTSY, cell division pro 98.1 3.2E-07 1.1E-11 89.6 -0.9 69 240-310 284-369 (503)
239 2kjq_A DNAA-related protein; s 98.1 1.3E-06 4.4E-11 72.1 2.7 39 205-244 35-75 (149)
240 2o5v_A DNA replication and rep 98.1 2.3E-06 7.8E-11 80.9 4.5 47 194-241 15-74 (359)
241 1vma_A Cell division protein F 98.1 1.2E-06 4.1E-11 81.1 2.4 47 198-244 96-142 (306)
242 2p67_A LAO/AO transport system 98.0 2.1E-07 7.1E-12 87.6 -3.0 63 181-244 32-94 (341)
243 3ice_A Transcription terminati 98.0 1E-06 3.5E-11 83.3 1.4 54 179-232 133-200 (422)
244 2obl_A ESCN; ATPase, hydrolase 98.0 2.5E-07 8.4E-12 87.2 -3.0 70 4-85 167-246 (347)
245 2dpy_A FLII, flagellum-specifi 98.0 3.7E-07 1.3E-11 88.6 -2.0 68 6-85 256-335 (438)
246 1s96_A Guanylate kinase, GMP k 98.0 9.7E-07 3.3E-11 77.7 0.7 50 246-295 13-71 (219)
247 3ney_A 55 kDa erythrocyte memb 98.0 1.7E-06 5.9E-11 74.7 1.9 31 201-231 14-44 (197)
248 3euj_A Chromosome partition pr 98.0 2.1E-06 7.1E-11 84.0 2.7 43 239-282 20-62 (483)
249 1w1w_A Structural maintenance 98.0 3E-06 1E-10 82.1 3.5 48 180-234 7-54 (430)
250 1n0w_A DNA repair protein RAD5 98.0 2.8E-06 9.7E-11 75.1 3.0 42 202-243 20-68 (243)
251 2qnr_A Septin-2, protein NEDD5 97.9 1.9E-07 6.3E-12 86.4 -5.4 59 4-66 109-168 (301)
252 1svm_A Large T antigen; AAA+ f 97.9 1.8E-06 6.1E-11 82.1 1.1 43 194-239 157-199 (377)
253 1knq_A Gluconate kinase; ALFA/ 97.9 2.7E-06 9.2E-11 71.6 2.1 37 204-244 6-42 (175)
254 3cr8_A Sulfate adenylyltranfer 97.9 1.4E-06 4.9E-11 86.8 -0.3 43 202-244 365-409 (552)
255 2qag_B Septin-6, protein NEDD5 97.9 3.6E-06 1.2E-10 81.0 2.5 66 239-307 30-101 (427)
256 3tau_A Guanylate kinase, GMP k 97.9 4.2E-06 1.4E-10 72.8 2.3 29 204-232 6-34 (208)
257 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 4.1E-06 1.4E-10 79.9 1.9 40 202-241 16-67 (392)
258 2jeo_A Uridine-cytidine kinase 97.8 5.3E-06 1.8E-10 74.0 2.3 39 235-273 11-49 (245)
259 3lnc_A Guanylate kinase, GMP k 97.8 6.5E-06 2.2E-10 72.6 2.8 34 240-273 18-52 (231)
260 1oix_A RAS-related protein RAB 97.8 3.6E-06 1.2E-10 71.9 1.0 37 208-244 31-78 (191)
261 1odf_A YGR205W, hypothetical 3 97.8 7.5E-07 2.6E-11 81.8 -3.9 96 249-352 31-146 (290)
262 3e70_C DPA, signal recognition 97.8 2.6E-06 8.8E-11 79.6 -0.6 62 247-310 127-205 (328)
263 3c8u_A Fructokinase; YP_612366 97.8 5.9E-06 2E-10 71.8 1.6 41 247-295 20-60 (208)
264 2qm8_A GTPase/ATPase; G protei 97.8 2.2E-06 7.6E-11 80.4 -1.4 58 239-296 45-117 (337)
265 2cvh_A DNA repair and recombin 97.7 7E-06 2.4E-10 71.3 1.6 47 193-241 6-53 (220)
266 1n0w_A DNA repair protein RAD5 97.7 4.7E-05 1.6E-09 67.0 7.0 57 25-81 118-209 (243)
267 2px0_A Flagellar biosynthesis 97.7 1.1E-05 3.8E-10 74.2 2.4 41 204-244 103-144 (296)
268 2gza_A Type IV secretion syste 97.7 1.2E-05 4E-10 76.1 2.2 44 240-283 166-209 (361)
269 3tr0_A Guanylate kinase, GMP k 97.7 1.3E-05 4.6E-10 68.8 2.4 29 246-274 4-32 (205)
270 2ffh_A Protein (FFH); SRP54, s 97.7 9.8E-06 3.4E-10 78.1 1.6 57 183-244 80-136 (425)
271 1kag_A SKI, shikimate kinase I 97.7 1.1E-05 3.9E-10 67.4 1.7 28 205-232 3-30 (173)
272 3k1j_A LON protease, ATP-depen 97.7 6.3E-06 2.1E-10 83.4 0.1 61 183-244 38-99 (604)
273 1qhl_A Protein (cell division 97.7 5.4E-06 1.8E-10 73.3 -0.4 31 250-280 28-58 (227)
274 3kta_A Chromosome segregation 97.7 2.5E-05 8.5E-10 66.0 3.7 82 251-332 28-138 (182)
275 1j8m_F SRP54, signal recogniti 97.6 1.1E-05 3.8E-10 74.2 1.4 59 182-244 77-136 (297)
276 3a00_A Guanylate kinase, GMP k 97.6 1.9E-05 6.3E-10 67.3 2.2 25 250-274 2-26 (186)
277 2f9l_A RAB11B, member RAS onco 97.6 1.2E-05 4E-10 69.0 0.9 37 208-244 7-54 (199)
278 3lda_A DNA repair protein RAD5 97.6 2.3E-05 8E-10 75.0 3.0 41 202-242 174-221 (400)
279 2www_A Methylmalonic aciduria 97.6 1.9E-05 6.5E-10 74.3 2.2 41 205-245 73-113 (349)
280 1lvg_A Guanylate kinase, GMP k 97.6 1.8E-05 6.3E-10 68.2 1.8 27 248-274 3-29 (198)
281 1cke_A CK, MSSA, protein (cyti 97.6 8E-06 2.7E-10 71.5 -0.6 34 206-239 5-41 (227)
282 2j41_A Guanylate kinase; GMP, 97.6 2E-05 6.9E-10 67.8 2.0 32 246-277 3-34 (207)
283 1pui_A ENGB, probable GTP-bind 97.6 2E-05 7E-10 67.8 2.0 51 4-54 145-196 (210)
284 1zp6_A Hypothetical protein AT 97.6 4.5E-05 1.5E-09 64.7 4.1 104 246-355 6-124 (191)
285 3m6a_A ATP-dependent protease 97.6 3.9E-06 1.3E-10 83.8 -3.3 61 180-242 84-144 (543)
286 1lw7_A Transcriptional regulat 97.5 1.6E-05 5.5E-10 75.2 1.0 37 241-277 160-198 (365)
287 2pez_A Bifunctional 3'-phospho 97.5 1.7E-05 5.7E-10 67.0 0.9 40 204-244 3-44 (179)
288 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 3.2E-05 1.1E-09 63.6 2.4 30 199-229 17-46 (149)
289 3t34_A Dynamin-related protein 97.5 3.4E-05 1.2E-09 72.8 2.3 42 194-238 25-68 (360)
290 1f6b_A SAR1; gtpases, N-termin 97.5 2.1E-05 7.3E-10 67.5 0.8 41 187-228 7-47 (198)
291 2dhr_A FTSH; AAA+ protein, hex 97.5 1.7E-05 5.9E-10 78.0 -0.0 60 180-244 41-100 (499)
292 1u0l_A Probable GTPase ENGC; p 97.5 6.1E-05 2.1E-09 69.3 3.6 36 247-282 167-202 (301)
293 4eaq_A DTMP kinase, thymidylat 97.5 3.9E-05 1.3E-09 67.7 2.2 44 196-240 13-59 (229)
294 2qt1_A Nicotinamide riboside k 97.4 3.4E-05 1.2E-09 66.6 1.7 31 201-231 16-46 (207)
295 3ec2_A DNA replication protein 97.4 3.8E-05 1.3E-09 64.8 1.6 43 24-66 98-144 (180)
296 4ad8_A DNA repair protein RECN 97.4 2E-05 6.9E-10 78.1 -0.4 34 195-229 50-83 (517)
297 1sq5_A Pantothenate kinase; P- 97.4 5.2E-05 1.8E-09 70.0 2.3 36 247-282 78-115 (308)
298 1m7g_A Adenylylsulfate kinase; 97.4 1.6E-05 5.5E-10 69.1 -1.2 44 201-244 20-65 (211)
299 2ewv_A Twitching motility prot 97.4 4.5E-05 1.6E-09 72.4 1.7 58 16-78 199-256 (372)
300 1sxj_C Activator 1 40 kDa subu 97.4 2E-05 6.7E-10 73.7 -1.0 58 184-242 23-82 (340)
301 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.5E-09 69.3 3.9 35 248-282 214-249 (358)
302 3asz_A Uridine kinase; cytidin 97.3 1.7E-07 5.7E-12 81.6 -14.4 62 4-65 85-161 (211)
303 1sxj_E Activator 1 40 kDa subu 97.3 5.3E-05 1.8E-09 70.9 1.9 38 208-245 38-76 (354)
304 2qag_A Septin-2, protein NEDD5 97.3 2.8E-05 9.4E-10 73.6 -0.3 50 179-235 17-66 (361)
305 2dr3_A UPF0273 protein PH0284; 97.3 7.3E-05 2.5E-09 65.9 2.4 46 194-239 10-56 (247)
306 2bbw_A Adenylate kinase 4, AK4 97.3 5.4E-05 1.9E-09 67.3 1.5 60 249-310 27-96 (246)
307 2oap_1 GSPE-2, type II secreti 97.3 6.7E-05 2.3E-09 74.1 1.5 84 199-282 199-293 (511)
308 1kgd_A CASK, peripheral plasma 97.3 9.9E-05 3.4E-09 62.4 2.3 27 248-274 4-30 (180)
309 1t9h_A YLOQ, probable GTPase E 97.2 5.2E-05 1.8E-09 69.9 0.5 37 246-282 170-206 (307)
310 1jjv_A Dephospho-COA kinase; P 97.2 0.00012 4.3E-09 62.9 2.8 31 208-243 4-34 (206)
311 2yv5_A YJEQ protein; hydrolase 97.2 0.00016 5.5E-09 66.5 3.6 33 249-282 165-197 (302)
312 1vma_A Cell division protein F 97.2 0.0001 3.5E-09 68.0 2.1 79 246-354 101-182 (306)
313 2yvu_A Probable adenylyl-sulfa 97.2 9.3E-05 3.2E-09 62.7 1.7 42 202-243 9-51 (186)
314 1p9r_A General secretion pathw 97.2 0.00013 4.3E-09 70.3 2.6 35 247-281 165-199 (418)
315 1rj9_A FTSY, signal recognitio 97.2 0.00026 8.9E-09 65.2 4.5 54 9-65 203-258 (304)
316 1sxj_E Activator 1 40 kDa subu 97.2 0.00035 1.2E-08 65.2 5.3 45 23-68 131-177 (354)
317 1y63_A LMAJ004144AAA protein; 97.1 0.00015 5.1E-09 61.5 2.3 32 198-229 2-33 (184)
318 3qks_A DNA double-strand break 97.1 0.00016 5.6E-09 62.4 2.4 30 199-229 17-46 (203)
319 4e22_A Cytidylate kinase; P-lo 97.1 0.0001 3.5E-09 66.0 1.0 34 248-281 26-62 (252)
320 3lda_A DNA repair protein RAD5 97.1 0.00081 2.8E-08 64.3 7.3 57 25-81 272-363 (400)
321 2bdt_A BH3686; alpha-beta prot 97.1 0.00016 5.6E-09 61.3 1.9 23 249-271 2-24 (189)
322 1m2o_B GTP-binding protein SAR 97.1 0.00013 4.4E-09 62.0 1.1 33 195-228 13-45 (190)
323 1odf_A YGR205W, hypothetical 3 97.1 0.00011 3.9E-09 67.2 0.7 30 204-233 29-58 (290)
324 3vaa_A Shikimate kinase, SK; s 97.0 0.00026 8.9E-09 60.7 2.9 42 232-273 8-49 (199)
325 3qkt_A DNA double-strand break 97.0 0.00021 7.1E-09 66.9 2.2 28 199-227 17-44 (339)
326 3tau_A Guanylate kinase, GMP k 97.0 0.00031 1E-08 60.8 3.1 28 248-275 7-34 (208)
327 2qor_A Guanylate kinase; phosp 97.0 0.00019 6.5E-09 61.8 1.7 30 202-231 8-37 (204)
328 3hr8_A Protein RECA; alpha and 97.0 0.00018 6.1E-09 67.7 1.6 38 202-239 57-94 (356)
329 1mky_A Probable GTP-binding pr 97.0 0.00022 7.7E-09 69.0 2.3 37 208-244 182-230 (439)
330 4eun_A Thermoresistant glucoki 97.0 0.00027 9.1E-09 60.7 2.4 27 247-273 27-53 (200)
331 3t61_A Gluconokinase; PSI-biol 97.0 0.00023 7.8E-09 61.1 1.8 34 206-243 18-51 (202)
332 2qag_C Septin-7; cell cycle, c 97.0 8.1E-05 2.8E-09 71.7 -1.3 58 9-68 119-180 (418)
333 1kag_A SKI, shikimate kinase I 97.0 0.00028 9.7E-09 58.7 2.3 26 249-274 4-29 (173)
334 2ius_A DNA translocase FTSK; n 96.9 0.00043 1.5E-08 68.1 3.7 47 198-244 159-207 (512)
335 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00024 8.2E-09 67.1 1.8 35 209-243 182-227 (364)
336 2if2_A Dephospho-COA kinase; a 96.9 0.00022 7.5E-09 61.2 1.3 22 208-229 3-24 (204)
337 2f1r_A Molybdopterin-guanine d 96.9 8.8E-05 3E-09 62.4 -1.2 93 250-356 3-119 (171)
338 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00014 4.8E-09 68.1 -0.1 38 194-231 10-49 (359)
339 3szr_A Interferon-induced GTP- 96.9 0.00077 2.6E-08 68.1 5.2 58 24-81 144-224 (608)
340 2ohf_A Protein OLA1, GTP-bindi 96.9 0.0003 1E-08 67.0 1.9 40 203-242 19-69 (396)
341 2qt1_A Nicotinamide riboside k 96.8 0.0007 2.4E-08 58.2 4.0 28 246-273 18-45 (207)
342 2gj8_A MNME, tRNA modification 96.8 0.00031 1.1E-08 58.6 1.5 26 205-230 3-28 (172)
343 2wjg_A FEOB, ferrous iron tran 96.8 0.00034 1.2E-08 58.7 1.2 22 208-229 9-30 (188)
344 2x8a_A Nuclear valosin-contain 96.8 0.00031 1E-08 63.7 1.0 24 252-275 47-70 (274)
345 2vp4_A Deoxynucleoside kinase; 96.8 0.0005 1.7E-08 60.4 2.3 27 246-272 17-43 (230)
346 3uie_A Adenylyl-sulfate kinase 96.8 0.00051 1.7E-08 58.9 2.3 29 246-274 22-50 (200)
347 2p5t_B PEZT; postsegregational 96.7 0.00041 1.4E-08 61.9 1.6 41 202-244 28-68 (253)
348 2zej_A Dardarin, leucine-rich 96.7 0.00054 1.8E-08 57.6 2.1 25 208-232 4-28 (184)
349 2kjq_A DNAA-related protein; s 96.7 0.0015 5.2E-08 53.4 4.8 42 22-64 79-124 (149)
350 1ega_A Protein (GTP-binding pr 96.7 0.00035 1.2E-08 64.2 0.9 26 205-230 7-32 (301)
351 2px0_A Flagellar biosynthesis 96.7 0.00052 1.8E-08 62.9 2.0 41 248-295 104-144 (296)
352 2wji_A Ferrous iron transport 96.7 0.00069 2.4E-08 55.8 2.5 23 208-230 5-27 (165)
353 1rz3_A Hypothetical protein rb 96.7 0.00041 1.4E-08 59.6 1.1 32 248-279 21-52 (201)
354 1oix_A RAS-related protein RAB 96.7 0.00067 2.3E-08 57.5 2.4 25 251-275 31-55 (191)
355 2dr3_A UPF0273 protein PH0284; 96.7 0.0053 1.8E-07 53.7 8.3 56 25-80 127-196 (247)
356 3ney_A 55 kDa erythrocyte memb 96.6 0.00074 2.5E-08 58.0 2.4 31 244-274 14-44 (197)
357 1np6_A Molybdopterin-guanine d 96.6 0.00054 1.9E-08 57.7 1.4 35 207-241 7-44 (174)
358 2dy1_A Elongation factor G; tr 96.6 0.00038 1.3E-08 71.0 0.6 38 200-237 3-42 (665)
359 1knq_A Gluconate kinase; ALFA/ 96.6 0.00075 2.6E-08 56.3 2.3 25 248-272 7-31 (175)
360 3tqc_A Pantothenate kinase; bi 96.6 0.00084 2.9E-08 62.2 2.6 39 251-295 94-132 (321)
361 1q3t_A Cytidylate kinase; nucl 96.6 0.00044 1.5E-08 60.9 0.6 35 204-238 14-51 (236)
362 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.0012 4E-08 62.9 3.6 26 246-271 17-42 (392)
363 3r20_A Cytidylate kinase; stru 96.5 0.00034 1.2E-08 61.8 -0.3 32 206-237 9-43 (233)
364 2f9l_A RAB11B, member RAS onco 96.5 0.00092 3.1E-08 56.9 2.3 23 251-273 7-29 (199)
365 3cm0_A Adenylate kinase; ATP-b 96.5 0.00063 2.2E-08 57.2 1.2 25 204-228 2-26 (186)
366 2zr9_A Protein RECA, recombina 96.5 0.0063 2.2E-07 57.0 8.1 71 15-85 126-234 (349)
367 2r6a_A DNAB helicase, replicat 96.4 0.0068 2.3E-07 58.8 8.2 74 7-82 294-400 (454)
368 3nwj_A ATSK2; P loop, shikimat 96.4 0.0004 1.4E-08 62.1 -0.5 36 238-273 34-72 (250)
369 2zr9_A Protein RECA, recombina 96.4 0.00096 3.3E-08 62.6 2.0 39 202-240 57-95 (349)
370 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0013 4.4E-08 62.6 2.9 37 205-241 34-70 (392)
371 3kl4_A SRP54, signal recogniti 96.4 0.00095 3.2E-08 64.4 1.9 39 205-243 96-134 (433)
372 2r6a_A DNAB helicase, replicat 96.4 0.00082 2.8E-08 65.4 1.4 50 192-241 189-239 (454)
373 1nij_A Hypothetical protein YJ 96.4 0.0004 1.4E-08 64.3 -1.0 54 8-72 141-196 (318)
374 3lxx_A GTPase IMAP family memb 96.3 0.0014 4.8E-08 57.6 2.5 28 208-235 31-58 (239)
375 1jjv_A Dephospho-COA kinase; P 96.3 0.0016 5.5E-08 55.8 2.7 21 251-271 4-24 (206)
376 1udx_A The GTP-binding protein 96.3 0.0006 2E-08 65.5 -0.2 64 4-71 248-315 (416)
377 3kb2_A SPBC2 prophage-derived 96.3 0.0013 4.4E-08 54.3 1.8 23 208-230 3-25 (173)
378 1cke_A CK, MSSA, protein (cyti 96.3 0.0016 5.4E-08 56.6 2.3 31 250-280 6-39 (227)
379 2if2_A Dephospho-COA kinase; a 96.3 0.0014 4.7E-08 56.1 1.9 21 251-271 3-23 (204)
380 1svm_A Large T antigen; AAA+ f 96.3 0.001 3.4E-08 63.1 1.0 34 240-273 160-193 (377)
381 1qhx_A CPT, protein (chloramph 96.2 0.0017 5.7E-08 54.1 2.2 26 206-231 3-28 (178)
382 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0019 6.3E-08 52.9 2.4 20 251-270 25-44 (149)
383 1lv7_A FTSH; alpha/beta domain 96.2 0.0012 4.1E-08 58.7 1.3 33 197-231 38-70 (257)
384 3auy_A DNA double-strand break 96.2 0.0015 5.2E-08 61.7 2.0 30 197-227 17-46 (371)
385 1iy2_A ATP-dependent metallopr 96.2 0.00048 1.6E-08 62.3 -1.5 23 252-274 76-98 (278)
386 3cr8_A Sulfate adenylyltranfer 96.2 0.00084 2.9E-08 66.8 0.1 32 247-278 367-398 (552)
387 1ypw_A Transitional endoplasmi 96.1 0.0016 5.5E-08 67.9 1.9 32 201-232 233-264 (806)
388 1ixz_A ATP-dependent metallopr 96.1 0.00056 1.9E-08 60.8 -1.4 23 252-274 52-74 (254)
389 3kta_B Chromosome segregation 96.1 0.0026 9.1E-08 53.4 2.8 20 336-355 60-79 (173)
390 1uf9_A TT1252 protein; P-loop, 96.1 0.0021 7.1E-08 54.7 2.2 31 207-242 9-39 (203)
391 4fcw_A Chaperone protein CLPB; 96.1 0.00043 1.5E-08 63.3 -2.4 33 207-239 48-80 (311)
392 3iij_A Coilin-interacting nucl 96.1 0.0018 6.3E-08 54.1 1.7 26 204-229 9-34 (180)
393 3lw7_A Adenylate kinase relate 96.0 0.0021 7.2E-08 52.9 1.9 19 208-226 3-21 (179)
394 1zu4_A FTSY; GTPase, signal re 96.0 0.0015 5.2E-08 60.5 1.1 40 241-280 97-136 (320)
395 1jal_A YCHF protein; nucleotid 96.0 0.0027 9.1E-08 59.8 2.7 36 206-241 2-48 (363)
396 1kht_A Adenylate kinase; phosp 96.0 0.0023 8E-08 53.7 2.1 25 206-230 3-27 (192)
397 2rhm_A Putative kinase; P-loop 96.0 0.002 6.9E-08 54.3 1.6 27 204-230 3-29 (193)
398 1gtv_A TMK, thymidylate kinase 96.0 0.00065 2.2E-08 58.5 -1.7 26 208-233 2-27 (214)
399 1vht_A Dephospho-COA kinase; s 95.9 0.0023 8E-08 55.3 1.8 23 206-228 4-26 (218)
400 1ex7_A Guanylate kinase; subst 95.9 0.0024 8.2E-08 54.3 1.7 20 209-228 4-23 (186)
401 2wji_A Ferrous iron transport 95.9 0.0035 1.2E-07 51.5 2.7 24 250-273 4-27 (165)
402 1xjc_A MOBB protein homolog; s 95.9 0.0025 8.4E-08 53.4 1.7 26 208-233 6-31 (169)
403 1via_A Shikimate kinase; struc 95.9 0.0024 8.2E-08 53.2 1.5 23 208-230 6-28 (175)
404 2v54_A DTMP kinase, thymidylat 95.9 0.0032 1.1E-07 53.6 2.3 26 205-230 3-28 (204)
405 2ze6_A Isopentenyl transferase 95.9 0.0024 8.1E-08 57.0 1.5 23 208-230 3-25 (253)
406 2jaq_A Deoxyguanosine kinase; 95.9 0.0027 9.3E-08 53.9 1.8 23 208-230 2-24 (205)
407 1in4_A RUVB, holliday junction 95.8 0.003 1E-07 58.7 2.1 24 250-273 52-75 (334)
408 1fzq_A ADP-ribosylation factor 95.8 0.003 1E-07 52.8 2.0 28 208-235 18-49 (181)
409 2gj8_A MNME, tRNA modification 95.8 0.0036 1.2E-07 52.0 2.4 25 249-273 4-28 (172)
410 3trf_A Shikimate kinase, SK; a 95.8 0.0036 1.2E-07 52.5 2.1 25 206-230 5-29 (185)
411 3k53_A Ferrous iron transport 95.8 0.0029 9.8E-08 56.9 1.6 24 208-231 5-28 (271)
412 1ly1_A Polynucleotide kinase; 95.7 0.0033 1.1E-07 52.2 1.8 21 208-228 4-24 (181)
413 2wjg_A FEOB, ferrous iron tran 95.7 0.005 1.7E-07 51.3 2.7 23 250-272 8-30 (188)
414 4eaq_A DTMP kinase, thymidylat 95.6 0.004 1.4E-07 54.7 2.1 39 237-275 11-52 (229)
415 1f2t_B RAD50 ABC-ATPase; DNA d 95.6 0.0031 1.1E-07 51.5 1.3 17 336-352 53-69 (148)
416 2c95_A Adenylate kinase 1; tra 95.6 0.0037 1.3E-07 52.8 1.7 27 204-230 7-33 (196)
417 1gvn_B Zeta; postsegregational 95.6 0.0041 1.4E-07 56.6 2.1 35 205-241 32-66 (287)
418 2bwj_A Adenylate kinase 5; pho 95.6 0.0021 7.1E-08 54.5 0.1 30 201-230 7-36 (199)
419 2wwf_A Thymidilate kinase, put 95.6 0.0044 1.5E-07 53.0 2.1 26 204-229 8-33 (212)
420 2zej_A Dardarin, leucine-rich 95.6 0.0057 1.9E-07 51.2 2.7 22 251-272 4-25 (184)
421 1nn5_A Similar to deoxythymidy 95.6 0.0046 1.6E-07 53.0 2.1 28 203-230 6-33 (215)
422 2pez_A Bifunctional 3'-phospho 95.5 0.0049 1.7E-07 51.5 2.1 26 248-273 4-29 (179)
423 3ihw_A Centg3; RAS, centaurin, 95.5 0.005 1.7E-07 51.7 2.0 28 208-235 22-54 (184)
424 2vli_A Antibiotic resistance p 95.5 0.0049 1.7E-07 51.4 2.0 25 205-229 4-28 (183)
425 3qks_A DNA double-strand break 95.5 0.0058 2E-07 52.6 2.4 20 251-270 25-44 (203)
426 2www_A Methylmalonic aciduria 95.5 0.0032 1.1E-07 59.0 0.8 27 249-275 74-100 (349)
427 3ake_A Cytidylate kinase; CMP 95.5 0.0038 1.3E-07 53.2 1.3 23 208-230 4-26 (208)
428 2qor_A Guanylate kinase; phosp 95.4 0.007 2.4E-07 51.8 2.8 26 248-273 11-36 (204)
429 2plr_A DTMP kinase, probable t 95.4 0.0048 1.6E-07 52.7 1.7 28 205-232 3-30 (213)
430 3cf0_A Transitional endoplasmi 95.4 0.0041 1.4E-07 56.9 1.3 30 201-230 44-73 (301)
431 2ce7_A Cell division protein F 95.4 0.0034 1.2E-07 61.3 0.8 32 195-228 40-71 (476)
432 1ega_A Protein (GTP-binding pr 95.4 0.01 3.4E-07 54.3 3.9 24 250-273 9-32 (301)
433 1nks_A Adenylate kinase; therm 95.4 0.0049 1.7E-07 51.7 1.6 24 208-231 3-26 (194)
434 3q72_A GTP-binding protein RAD 95.4 0.0056 1.9E-07 49.8 1.9 24 208-231 4-27 (166)
435 2ged_A SR-beta, signal recogni 95.3 0.0049 1.7E-07 51.7 1.5 24 207-230 49-72 (193)
436 3t61_A Gluconokinase; PSI-biol 95.3 0.0073 2.5E-07 51.5 2.6 23 250-272 19-41 (202)
437 2z0h_A DTMP kinase, thymidylat 95.3 0.0058 2E-07 51.5 1.8 24 208-231 2-25 (197)
438 1tev_A UMP-CMP kinase; ploop, 95.3 0.0054 1.8E-07 51.5 1.6 24 206-229 3-26 (196)
439 3lxx_A GTPase IMAP family memb 95.3 0.0099 3.4E-07 52.1 3.4 28 250-277 30-57 (239)
440 1a7j_A Phosphoribulokinase; tr 95.3 0.0068 2.3E-07 55.2 2.3 25 206-230 5-29 (290)
441 3b1v_A Ferrous iron uptake tra 95.2 0.0061 2.1E-07 55.0 1.9 23 208-230 5-27 (272)
442 3k1j_A LON protease, ATP-depen 95.2 0.018 6E-07 58.0 5.4 32 246-277 57-88 (604)
443 1z2a_A RAS-related protein RAB 95.2 0.0061 2.1E-07 49.5 1.6 23 208-230 7-29 (168)
444 2nzj_A GTP-binding protein REM 95.2 0.0071 2.4E-07 49.6 1.9 23 208-230 6-28 (175)
445 1moz_A ARL1, ADP-ribosylation 95.2 0.0063 2.2E-07 50.4 1.6 22 207-228 19-40 (183)
446 3tw8_B RAS-related protein RAB 95.2 0.0075 2.6E-07 49.6 2.1 23 208-230 11-33 (181)
447 3llm_A ATP-dependent RNA helic 95.1 0.0053 1.8E-07 53.8 1.2 26 203-228 73-98 (235)
448 3fb4_A Adenylate kinase; psych 95.1 0.0069 2.4E-07 52.1 1.8 23 208-230 2-24 (216)
449 2erx_A GTP-binding protein DI- 95.1 0.0073 2.5E-07 49.2 1.9 22 208-229 5-26 (172)
450 1y63_A LMAJ004144AAA protein; 95.1 0.012 4E-07 49.5 3.2 29 244-272 5-33 (184)
451 3q85_A GTP-binding protein REM 95.1 0.0076 2.6E-07 49.1 1.9 23 208-230 4-26 (169)
452 3lxw_A GTPase IMAP family memb 95.1 0.0073 2.5E-07 53.5 1.9 24 208-231 23-46 (247)
453 2dyk_A GTP-binding protein; GT 95.1 0.0068 2.3E-07 48.9 1.5 23 208-230 3-25 (161)
454 1v5w_A DMC1, meiotic recombina 95.1 0.009 3.1E-07 55.8 2.6 28 202-229 118-145 (343)
455 2ce2_X GTPase HRAS; signaling 95.1 0.0063 2.2E-07 49.1 1.3 23 208-230 5-27 (166)
456 1e6c_A Shikimate kinase; phosp 95.0 0.0072 2.4E-07 49.9 1.6 24 207-230 3-26 (173)
457 1svi_A GTP-binding protein YSX 95.0 0.0074 2.5E-07 50.6 1.6 24 207-230 24-47 (195)
458 1kao_A RAP2A; GTP-binding prot 95.0 0.0073 2.5E-07 48.9 1.5 22 208-229 5-26 (167)
459 1zd8_A GTP:AMP phosphotransfer 95.0 0.0081 2.8E-07 52.3 1.9 26 204-229 5-30 (227)
460 2e87_A Hypothetical protein PH 95.0 0.0084 2.9E-07 56.2 2.1 21 208-228 169-189 (357)
461 1u8z_A RAS-related protein RAL 95.0 0.0075 2.6E-07 48.8 1.6 23 208-230 6-28 (168)
462 1aky_A Adenylate kinase; ATP:A 95.0 0.0094 3.2E-07 51.5 2.2 26 205-230 3-28 (220)
463 3pqc_A Probable GTP-binding pr 95.0 0.0077 2.6E-07 50.3 1.6 23 208-230 25-47 (195)
464 1z0j_A RAB-22, RAS-related pro 95.0 0.0076 2.6E-07 49.0 1.5 23 208-230 8-30 (170)
465 3dl0_A Adenylate kinase; phosp 95.0 0.0083 2.8E-07 51.6 1.8 22 208-229 2-23 (216)
466 2iyv_A Shikimate kinase, SK; t 95.0 0.0084 2.9E-07 50.2 1.8 23 207-229 3-25 (184)
467 2grj_A Dephospho-COA kinase; T 95.0 0.0084 2.9E-07 51.1 1.8 23 207-229 13-35 (192)
468 2pbr_A DTMP kinase, thymidylat 95.0 0.0084 2.9E-07 50.3 1.8 23 208-230 2-24 (195)
469 2ohf_A Protein OLA1, GTP-bindi 94.9 0.016 5.3E-07 55.1 3.8 26 247-272 20-45 (396)
470 2pt5_A Shikimate kinase, SK; a 94.9 0.0086 2.9E-07 49.2 1.8 23 208-230 2-24 (168)
471 1z08_A RAS-related protein RAB 94.9 0.0077 2.6E-07 49.1 1.5 22 208-229 8-29 (170)
472 2lkc_A Translation initiation 94.9 0.011 3.6E-07 48.7 2.4 26 205-230 7-32 (178)
473 2z43_A DNA repair and recombin 94.9 0.012 4E-07 54.5 2.8 28 202-229 103-130 (324)
474 1ky3_A GTP-binding protein YPT 94.9 0.0079 2.7E-07 49.6 1.5 23 208-230 10-32 (182)
475 1g16_A RAS-related protein SEC 94.9 0.0074 2.5E-07 49.1 1.3 23 208-230 5-27 (170)
476 3cm0_A Adenylate kinase; ATP-b 94.9 0.011 3.6E-07 49.5 2.3 23 249-271 4-26 (186)
477 1ek0_A Protein (GTP-binding pr 94.9 0.0082 2.8E-07 48.8 1.6 23 208-230 5-27 (170)
478 1c1y_A RAS-related protein RAP 94.9 0.0083 2.8E-07 48.7 1.6 22 208-229 5-26 (167)
479 2cxx_A Probable GTP-binding pr 94.9 0.0085 2.9E-07 49.9 1.7 23 208-230 3-25 (190)
480 3cbq_A GTP-binding protein REM 94.9 0.01 3.5E-07 50.3 2.2 23 208-230 25-47 (195)
481 2p67_A LAO/AO transport system 94.9 0.0065 2.2E-07 56.6 1.0 32 244-275 51-82 (341)
482 1zak_A Adenylate kinase; ATP:A 94.9 0.009 3.1E-07 51.7 1.8 26 205-230 4-29 (222)
483 1uj2_A Uridine-cytidine kinase 94.8 0.0091 3.1E-07 52.9 1.8 22 208-229 24-45 (252)
484 2xau_A PRE-mRNA-splicing facto 94.8 0.008 2.7E-07 62.3 1.7 71 4-74 186-261 (773)
485 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.0085 2.9E-07 49.2 1.5 22 208-229 9-30 (177)
486 2w58_A DNAI, primosome compone 94.8 0.012 4E-07 50.1 2.4 32 207-238 55-86 (202)
487 2cdn_A Adenylate kinase; phosp 94.8 0.011 3.8E-07 50.2 2.3 25 206-230 20-44 (201)
488 1zuh_A Shikimate kinase; alpha 94.8 0.01 3.5E-07 48.9 2.0 23 207-229 8-30 (168)
489 3k53_A Ferrous iron transport 94.8 0.012 3.9E-07 52.9 2.4 25 250-274 4-28 (271)
490 2fn4_A P23, RAS-related protei 94.8 0.0082 2.8E-07 49.4 1.3 22 208-229 11-32 (181)
491 1qf9_A UMP/CMP kinase, protein 94.8 0.0091 3.1E-07 50.0 1.6 23 207-229 7-29 (194)
492 3t5d_A Septin-7; GTP-binding p 94.8 0.0098 3.3E-07 53.5 1.9 23 208-230 10-32 (274)
493 3bos_A Putative DNA replicatio 94.8 0.011 3.8E-07 51.2 2.2 29 205-233 51-79 (242)
494 2qby_A CDC6 homolog 1, cell di 94.7 0.009 3.1E-07 55.7 1.6 30 204-233 43-72 (386)
495 1ukz_A Uridylate kinase; trans 94.7 0.01 3.6E-07 50.4 1.8 23 207-229 16-38 (203)
496 1r2q_A RAS-related protein RAB 94.7 0.0098 3.4E-07 48.3 1.6 22 208-229 8-29 (170)
497 1mky_A Probable GTP-binding pr 94.7 0.014 4.7E-07 56.3 2.9 65 206-273 140-204 (439)
498 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.01 3.4E-07 53.0 1.7 26 205-230 3-28 (260)
499 4dsu_A GTPase KRAS, isoform 2B 94.7 0.0098 3.3E-07 49.4 1.5 23 208-230 6-28 (189)
500 3clv_A RAB5 protein, putative; 94.7 0.01 3.4E-07 49.8 1.5 23 208-230 9-31 (208)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.8e-47 Score=399.55 Aligned_cols=191 Identities=39% Similarity=0.658 Sum_probs=150.6
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+||||||||++||++|+.+|+|||||||||+||+.++.+|.++|++.++|||+||||++++.++||+|++|++|+
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 67899999999999999999999999999999999999999999999999878899999999999999999999999999
Q ss_pred EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684 83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 162 (356)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (356)
++.|.|++++|...... . .. .. . ....... ...+..
T Consensus 623 iv~~~G~~~e~~~~~~~----~--------------~~-~~----------------------~--l~~~~~~-~~~p~~ 658 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKCPA----A--------------KA-YE----------------------E--LSNTDLE-FKFPEP 658 (986)
T ss_dssp EEEEESCHHHHHHHCGG----G--------------GG-SS----------------------S--TTTCCCC-CCCCCC
T ss_pred eecCCCCHHHHHhhhHH----H--------------HH-HH----------------------h--hhhhhhh-cccccc
Confidence 98788998776431000 0 00 00 0 0000000 000000
Q ss_pred eeeEEEecCCCCCCCCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
. ........++++++++|+++.|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 659 ~----~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 659 G----YLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp C----CCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred c----cccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 0 0000011235689999999999542 5799999999999999999999999999999999999999999999875
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5e-47 Score=379.59 Aligned_cols=256 Identities=24% Similarity=0.289 Sum_probs=186.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||||||+||+||+.+|+|||||||||+||+.++.++.++|+++ ++|||+||||++++..+||+|++|
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47889999999999999999999999999999999999999999888888765 789999999999999999999999
Q ss_pred eCCeE--eEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhh
Q psy2684 79 DMKKL--FYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 156 (356)
Q Consensus 79 ~~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (356)
+++.. ..+...++.-. .. . ..+...... .... ...
T Consensus 232 ~~~~~~~~~~~~~~~~~~--------~~-~---------~~~~~~~~~------------------~~~~--~~~----- 268 (538)
T 1yqt_A 232 YGEPGVYGIFSQPKGTRN--------GI-N---------EFLRGYLKD------------------ENVR--FRP----- 268 (538)
T ss_dssp EEETTTEEEECCCEEHHH--------HH-H---------HHHHTEETT------------------TTEE--CSS-----
T ss_pred cCcccccccccchhhHHH--------HH-H---------HHhhhccch------------------hhhc--ccc-----
Confidence 85421 11222222100 00 0 000000000 0000 000
Q ss_pred hcCCcceeeEEEecCCC--CCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684 157 LEKPREYIVKFRFPNPP--YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~ 234 (356)
.+ ..+.++.+. ..++++++++|+++.| ++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++
T Consensus 269 --~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 340 (538)
T 1yqt_A 269 --YE----IKFTKTGERVEIERETLVTYPRLVKDY-GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 340 (538)
T ss_dssp --SC----CCCCCSSGGGSSCCCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred --cc----cccccCCcccccCCCeEEEEeeEEEEE-CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 00 000000100 1245689999999999 44 47899999999999999999999999999999999999999
Q ss_pred CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--
Q psy2684 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 312 (356)
Q Consensus 235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-- 312 (356)
|+|.+. .++||++|++. .++..|+.+++...
T Consensus 341 G~i~~~---------------------------------------------~~i~~v~Q~~~--~~~~~tv~~~~~~~~~ 373 (538)
T 1yqt_A 341 GKIEWD---------------------------------------------LTVAYKPQYIK--ADYEGTVYELLSKIDA 373 (538)
T ss_dssp CCCCCC---------------------------------------------CCEEEECSSCC--CCCSSBHHHHHHHHHH
T ss_pred eEEEEC---------------------------------------------ceEEEEecCCc--CCCCCcHHHHHHhhhc
Confidence 988541 25899999874 34677887776432
Q ss_pred cC-CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 313 FN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 313 ~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. .....++++|+.+++.+... +++.+|||||||||+||++++
T Consensus 374 ~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~qrv~lAraL~ 417 (538)
T 1yqt_A 374 SKLNSNFYKTELLKPLGIIDLYD-REVNELSGGELQRVAIAATLL 417 (538)
T ss_dssp HHHTCHHHHHHTTTTTTCGGGTT-SBGGGCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHH
Confidence 11 23455778999999976554 578999999999999999974
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.1e-46 Score=376.14 Aligned_cols=256 Identities=25% Similarity=0.338 Sum_probs=186.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 47889999999999999999999999999999999999999998888888765 789999999999999999999999
Q ss_pred eCCeEe--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhh
Q psy2684 79 DMKKLF--YYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 156 (356)
Q Consensus 79 ~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (356)
+++... .+...++.. ... .. .+.. . .. .. .. ..
T Consensus 302 ~~~~~~~g~~~~~~~~~--------~~i-~~---------~~~~--~---------------------~~-~~--~~-~~ 336 (607)
T 3bk7_A 302 YGEPGVYGIFSKPKGTR--------NGI-NE---------FLQG--Y---------------------LK-DE--NV-RF 336 (607)
T ss_dssp ESCTTTEEEECCCEEHH--------HHH-HH---------HHHT--E---------------------ET-TT--TE-EC
T ss_pred CCCccccceeccchhHH--------HHH-HH---------HHhh--c---------------------ch-hh--hh-hc
Confidence 864321 111222110 000 00 0000 0 00 00 00 00
Q ss_pred hcCCcceeeEEEecCCC--CCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684 157 LEKPREYIVKFRFPNPP--YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~ 234 (356)
+.....+....+. ...+++++++|+++.| ++ ..|+++||+|.+||+++|+||||||||||+++|+|+++|++
T Consensus 337 ----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 337 ----RPYEIRFTKLSERVDVERETLVEYPRLVKDY-GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp ----CSSCCCCCCSTTSCCCCCCEEEEECCEEEEC-SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred ----cccccccccCCCcccccCceEEEEeceEEEe-cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 0000000111111 1235689999999999 44 47899999999999999999999999999999999999999
Q ss_pred CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-c
Q psy2684 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 313 (356)
Q Consensus 235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~ 313 (356)
|+|.+. .++||++|++. .+...|+.+++... .
T Consensus 411 G~I~~~---------------------------------------------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~ 443 (607)
T 3bk7_A 411 GKVEWD---------------------------------------------LTVAYKPQYIK--AEYEGTVYELLSKIDS 443 (607)
T ss_dssp SCCCCC---------------------------------------------CCEEEECSSCC--CCCSSBHHHHHHHHHH
T ss_pred eEEEEe---------------------------------------------eEEEEEecCcc--CCCCCcHHHHHHhhhc
Confidence 988541 25899999874 44677888876432 1
Q ss_pred -C-CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 314 -N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 314 -~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. .....+.++|+.+|+.+..+ +++.+|||||||||+||++|+
T Consensus 444 ~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 444 SKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQRVAIAATLL 487 (607)
T ss_dssp HHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 1 12345678899999987655 578999999999999999974
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-45 Score=368.60 Aligned_cols=262 Identities=20% Similarity=0.192 Sum_probs=186.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
.++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 132 ~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEec
Confidence 47889999999999999999999999999999999999999999999988876 6899999999999999999999998
Q ss_pred CCeEe--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684 80 MKKLF--YYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 157 (356)
Q Consensus 80 ~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (356)
+|... .+...+..- ... .. .+.... . ..... .......
T Consensus 212 ~~~~~~g~~~~~~~~~--------~~~-~~---------~~~g~~-~-----------------~~~~~--~r~~~~~-- 251 (538)
T 3ozx_A 212 GESSVYGRVSKSYAAR--------VGI-NN---------FLKGYL-P-----------------AENMK--IRPDEIK-- 251 (538)
T ss_dssp EETTTEEEECCCEEHH--------HHH-HH---------HHHTEE-T-----------------TTTEE--CSSSCCC--
T ss_pred CCcccccccchhhhHH--------HHH-HH---------HHhhhc-h-----------------hhhhh--ccchhhh--
Confidence 65322 111222100 000 00 000000 0 00000 0000000
Q ss_pred cCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i 237 (356)
.+.... ..........++++++++++.| ++ ..|..+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 252 -~~~~~~---~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 252 -FMLKEV---SDLDLSKDLKTKMKWTKIIKKL-GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp -CSCC-------------CCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred -cccccc---ccccccccccceEEEcceEEEE-CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 000000 0000001235689999999999 44 56888899999999999999999999999999999999999999
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--- 314 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--- 314 (356)
.+++ ..++|++|+.. .....|+.+++.....
T Consensus 326 ~~~~--------------------------------------------~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~ 359 (538)
T 3ozx_A 326 TPEK--------------------------------------------QILSYKPQRIF--PNYDGTVQQYLENASKDAL 359 (538)
T ss_dssp ESSC--------------------------------------------CCEEEECSSCC--CCCSSBHHHHHHHHCSSTT
T ss_pred EECC--------------------------------------------eeeEeechhcc--cccCCCHHHHHHHhhhhcc
Confidence 7532 24789999763 3346788888764321
Q ss_pred -CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 315 -LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 315 -~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.....+.++++.+++....+ +++.+|||||||||+||++|+
T Consensus 360 ~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 360 STSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp CTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 12345678899999987665 478999999999999999973
No 5
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=349.22 Aligned_cols=256 Identities=20% Similarity=0.267 Sum_probs=179.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||+|++|
T Consensus 215 ~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47889999999999999999999999999999999999999999999888765 579999999999999999999999
Q ss_pred eCCeEeE--ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhh
Q psy2684 79 DMKKLFY--YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 156 (356)
Q Consensus 79 ~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (356)
+++.... +..+++. . ... ..+.. .....+. .
T Consensus 295 ~~~~~~~~~~~~~~~~-~--------~~~----------~~~~~----------------------~~~~~~~------~ 327 (608)
T 3j16_B 295 YGVPSVYGVVTLPASV-R--------EGI----------NIFLD----------------------GHIPAEN------L 327 (608)
T ss_dssp ESCTTTEEEECCCEEH-H--------HHH----------HHHHH----------------------TEETTTT------E
T ss_pred eCCccccceecCchhH-H--------HHH----------HHhhc----------------------cccchhh------h
Confidence 8764321 0111110 0 000 00000 0000000 0
Q ss_pred hcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCC-----CeEEEEcCCCCCcchhhhhhccccc
Q psy2684 157 LEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME-----SRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~g-----e~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
. .+..... +..........+...++++.|++...+++++||++.+| |+++|+||||||||||+++|+|+++
T Consensus 328 ~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 328 R--FRTEALQ--FRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp E--CSSSCCC--CCCSSSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred c--ccccccc--ccccccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 0 0000000 00000011112233678888854456899999999999 8899999999999999999999999
Q ss_pred cCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH
Q psy2684 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311 (356)
Q Consensus 232 p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~ 311 (356)
|++|+.. ....++|++|+.. .....|+.+++..
T Consensus 404 p~~G~~~---------------------------------------------~~~~i~~~~q~~~--~~~~~tv~e~~~~ 436 (608)
T 3j16_B 404 PDEGQDI---------------------------------------------PKLNVSMKPQKIA--PKFPGTVRQLFFK 436 (608)
T ss_dssp CSBCCCC---------------------------------------------CSCCEEEECSSCC--CCCCSBHHHHHHH
T ss_pred CCCCcCc---------------------------------------------cCCcEEEeccccc--ccCCccHHHHHHH
Confidence 9988520 0135899999864 2334578887654
Q ss_pred hc-C--CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 312 LF-N--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 312 ~~-~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. . .....+.++++.+++.+..+. ++.+|||||||||+||++|+
T Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 437 KIRGQFLNPQFQTDVVKPLRIDDIIDQ-EVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp HCSSTTTSHHHHHHTHHHHTSTTTSSS-BSSSCCHHHHHHHHHHHHTT
T ss_pred HhhcccccHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 32 1 234556788999999876654 78999999999999999974
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.9e-41 Score=366.59 Aligned_cols=144 Identities=27% Similarity=0.353 Sum_probs=109.3
Q ss_pred CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
..++++|+++.|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++....
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~------- 1101 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN------- 1101 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-------
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-------
Confidence 358999999999642 36999999999999999999999999999999999999999999999998864110
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHhhcCCCCc
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~~L~~~~l~~~ 332 (356)
. ...+.+++|++|++. ++ +.|+.|++.... ..+.+++++.++..++...
T Consensus 1102 ------------------------~-~~~r~~i~~v~Q~~~--l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~ 1153 (1284)
T 3g5u_A 1102 ------------------------V-QWLRAQLGIVSQEPI--LF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153 (1284)
T ss_dssp ------------------------H-HHHTTSCEEEESSCC--CC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHH
T ss_pred ------------------------H-HHHHhceEEECCCCc--cc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHH
Confidence 0 011457999999983 44 569999985422 2455666666655554322
Q ss_pred ccc----------CCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHT----------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~----------~~~~~LSGGqkqRvalA~~~l 356 (356)
... ....+|||||||||+|||+++
T Consensus 1154 i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp HSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred HHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 111 124689999999999999974
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-39 Score=334.37 Aligned_cols=163 Identities=23% Similarity=0.222 Sum_probs=117.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+|||||||||+||+||+.+|+ ||||||||++||+.++.++.++|+++ +.|||+||||++++. .||+|+
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii 274 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI 274 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEE
Confidence 468899999999999999999999998 99999999999999999988887754 689999999999876 599999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++. .|+++...... ..... . .+....
T Consensus 275 ~l~~g~~~~~G~i~~-~g~~~~~~~~~-------------------------~~~~~------~---------~~~~~~- 312 (670)
T 3ux8_A 275 DIGPGAGIHGGEVVA-AGTPEEVMNDP-------------------------NSLTG------Q---------YLSGKK- 312 (670)
T ss_dssp EECSSSGGGCCSEEE-EECHHHHHTCT-------------------------TCHHH------H---------HHTTSS-
T ss_pred EecccccccCCEEEE-ecCHHHHhcCc-------------------------hhHHH------H---------Hhcccc-
Confidence 99 7888875 46654432100 00000 0 000000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
. ...+ ..........+.+.+.+ ..+|+++||+|++||+++|+||||||||||++++.
T Consensus 313 ~-----~~~~---------~~~~~~~~~~~~~~~~~------~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 313 F-----IPIP---------AERRRPDGRWLEVVGAR------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp C-----CCCC---------SSCCCCCSCEEEEEEEC------STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred c-----cccc---------cccccccccceeecCcc------ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 0 0000 00001122344544432 35899999999999999999999999999998753
No 8
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-38 Score=326.75 Aligned_cols=159 Identities=25% Similarity=0.340 Sum_probs=118.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+|||||+|||+||++|+.+|+ +|||||||++||+..+.+|.++|+++ +.|||+||||++++.. ||+|+
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii 536 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHII 536 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 478999999999999999999999887 99999999999999999999998876 5799999999999865 99999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++ +.|+++++...... .... ..+ . . ...
T Consensus 537 ~lgpgag~~~G~iv-~~G~~~e~~~~~~~---~~~~---------------------------~~l------~--~-~~~ 576 (916)
T 3pih_A 537 DIGPGGGTNGGRVV-FQGTVDELLKNPDS---SLTG---------------------------EYL------S--G-KRK 576 (916)
T ss_dssp EEESSSGGGCSEEE-EEECHHHHHHSCTT---CHHH---------------------------HHH------H--S-SSC
T ss_pred EEcCCcccCCCEEE-EeechhhhhcCchh---cchh---------------------------hhh------h--c-ccc
Confidence 99 778876 57888765421000 0000 000 0 0 000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhh
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll 223 (356)
. ..+.........+++++++ ...|+++||+|++|++++|+|+||||||||+
T Consensus 577 ------~----------~~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 577 ------I----------TVNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ------C----------CCCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ------c----------ccccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 0 0000011112346666554 2369999999999999999999999999997
No 9
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.1e-37 Score=324.59 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=123.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLE--PTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~--p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+|||||+||++||++|+++ |++|||||||++||+..+++|.++|++ .+.|||+||||++++. .||+|+
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi 593 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIV 593 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEE
Confidence 5889999999999999999999999 589999999999999999999877764 5789999999999986 699999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++ +.|+++.+..... .+.. +.+ .. ....
T Consensus 594 ~Lgp~aG~~gG~iv-~~G~~~e~~~~~~----~lt~---------~~l------------------------~g--~~~~ 633 (993)
T 2ygr_A 594 DIGPGAGEHGGRIV-HSGPYDELLRNKD----SITG---------AYL------------------------SG--RESI 633 (993)
T ss_dssp EECSSSGGGCCSCC-EEECHHHHHHCTT----CHHH---------HHH------------------------HT--SSCC
T ss_pred EecCccccCCCEEE-EeeCHHHhhhhhH----HHHH---------HHh------------------------cc--Cccc
Confidence 99 466665 6788887654110 0000 000 00 0000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
..+.. .......+++++++++. ..|+++||+|++|++++|+|+||||||||++++.
T Consensus 634 -------~~~~~--------~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 634 -------EIPAI--------RRSVDPRRQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp -------CCCSS--------CCCCCSSSEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred -------cCccc--------cccCCCCceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 00000 00001135799999863 2699999999999999999999999999999964
No 10
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.6e-37 Score=321.90 Aligned_cols=165 Identities=25% Similarity=0.311 Sum_probs=125.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQ---TWKKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+|||||+|||+||++|+.+|+ +|||||||++||+..+++|.++++ +.+.|||+||||++++. .||+|+
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii 451 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLV 451 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEE
Confidence 578999999999999999999999995 999999999999999999888665 45789999999999885 699999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++ +.|+++++.+.... ... +.+. . ...
T Consensus 452 ~lgpgaG~~~G~iv-~~g~~~~~~~~~~~----~~~---------~~l~------------------------~---~~~ 490 (842)
T 2vf7_A 452 DVGPEAGEKGGEIL-YSGPPEGLKHVPES----QTG---------QYLF------------------------A---DRH 490 (842)
T ss_dssp EECSSSGGGCCSEE-EEECGGGGGGCTTC----HHH---------HHHH------------------------T---CCC
T ss_pred EeCCCcccCCCEEE-EecCHHHHHhchHH----HHH---------HHhh------------------------h---ccc
Confidence 99 566665 57888776431100 000 0000 0 000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhh-hccc
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL-LKGE 229 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~-l~gl 229 (356)
.+ + .....+.++|+++|+++ ..|+++||+|++|++++|+|+||||||||+++ |+|+
T Consensus 491 -~~------~----------~~~~~~~~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 491 -TE------P----------HTPREPAGWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp -CC------C----------CCCCCCSCEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred -cc------c----------cccCCCCceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 00 0 00112346799999975 16999999999999999999999999999997 7766
Q ss_pred cc
Q psy2684 230 LT 231 (356)
Q Consensus 230 ~~ 231 (356)
+.
T Consensus 548 l~ 549 (842)
T 2vf7_A 548 LA 549 (842)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.9e-37 Score=321.81 Aligned_cols=163 Identities=24% Similarity=0.204 Sum_probs=122.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.+|++.+|||||+||++||++|+++| ++|||||||++||+..+++|.++|++ .+.|||+||||++++. .||+|+
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi 576 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI 576 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEE
Confidence 58999999999999999999999985 99999999999999999999887765 4789999999999986 699999
Q ss_pred EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684 77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+| ++|+++ +.|+++++..... .+.. ..+ .. ....
T Consensus 577 ~LgpgaG~~gG~iv-~~G~~~e~~~~~~----slt~---------------------------~~l------~g--~~~~ 616 (972)
T 2r6f_A 577 DIGPGAGIHGGEVV-AAGTPEEVMNDPN----SLTG---------------------------QYL------SG--KKFI 616 (972)
T ss_dssp EECSSSGGGCCSEE-EEECTTTTTTCTT----CTTH---------------------------HHH------HT--SSCC
T ss_pred EeCCCccCCCCEEE-EecCHHHHHhhhH----HHHH---------------------------HHh------cC--Cccc
Confidence 99 567776 5788876543100 0000 000 00 0000
Q ss_pred CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
..+. .......+++++++++. ..|+++||+|+.|++++|+|+||||||||++++.
T Consensus 617 -------~~~~---------~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 617 -------PIPA---------ERRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp -------CCCS---------SCCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred -------cCcc---------ccccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 0000 00111236799999863 2699999999999999999999999999999864
No 12
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.7e-36 Score=325.35 Aligned_cols=143 Identities=24% Similarity=0.375 Sum_probs=112.6
Q ss_pred cEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
-++++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|+|+..-.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~-------- 1147 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN-------- 1147 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC--------
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC--------
Confidence 4899999999964 246999999999999999999999999999999999999999999999999874110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCcc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~ 333 (356)
....+.+|+|++|+|. +| +-|+.+|+... .+.+.+++++.++..++.+..
T Consensus 1148 ------------------------~~~lR~~i~~V~Qdp~--LF-~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I 1200 (1321)
T 4f4c_A 1148 ------------------------PEHTRSQIAIVSQEPT--LF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI 1200 (1321)
T ss_dssp ------------------------HHHHHTTEEEECSSCC--CC-SEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHhheEEECCCCE--ee-CccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHH
Confidence 0112457999999983 55 45899998532 345678888888877763221
Q ss_pred c------cCC----CCCCChHHHHHHHHHHHcC
Q psy2684 334 H------TIP----IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~------~~~----~~~LSGGqkqRvalA~~~l 356 (356)
. +.+ -..||||||||+||||+++
T Consensus 1201 ~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp HTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred HcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence 1 112 2579999999999999974
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=5e-31 Score=249.55 Aligned_cols=144 Identities=24% Similarity=0.318 Sum_probs=119.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 4 ~l~i~~ls~~y-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~---------- 72 (359)
T 3fvq_A 4 ALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN---------- 72 (359)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS----------
T ss_pred EEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc----------
Confidence 68999999999 6778999999999999999999999999999999999999999999999998763100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~ 331 (356)
.. ....+++|||+||++ .+++.+|+.+++.... ... .+++.++|+.+|+.+
T Consensus 73 -------------------~~-~~~~~r~ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~ 130 (359)
T 3fvq_A 73 -------------------TN-LPVRERRLGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE 130 (359)
T ss_dssp -------------------CB-CCGGGSCCEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG
T ss_pred -------------------cc-cchhhCCEEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch
Confidence 00 001135799999997 5899999999986532 222 245778999999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+|+
T Consensus 131 ~~~r-~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 131 LAGR-YPHELSGGQQQRAALARALA 154 (359)
T ss_dssp GTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred HhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 7765 67999999999999999974
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=3.5e-31 Score=243.18 Aligned_cols=148 Identities=26% Similarity=0.421 Sum_probs=117.8
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.|+++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~--------- 75 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS--------- 75 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCS---------
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcc---------
Confidence 35799999999995455699999999999999999999999999999999999999999999998876210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l 329 (356)
+.. ....+.++||+||++...++ ..|+.+++... .+.+. +.+.++|+.+|+
T Consensus 76 -----~~~----------------~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L 133 (275)
T 3gfo_A 76 -----RKG----------------IMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI 133 (275)
T ss_dssp -----HHH----------------HHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC
T ss_pred -----ccc----------------HHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 000 00012469999999854455 68999987542 23333 346788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.....+ ++.+|||||||||+||++++
T Consensus 134 ~~~~~~-~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 134 EHLKDK-PTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp GGGTTS-BGGGSCHHHHHHHHHHHHHT
T ss_pred chhhcC-CcccCCHHHHHHHHHHHHHH
Confidence 876654 77999999999999999974
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=4.5e-31 Score=237.56 Aligned_cols=148 Identities=30% Similarity=0.348 Sum_probs=115.6
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~------- 73 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD------- 73 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-------
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC-------
Confidence 47899999999532 35899999999999999999999999999999999999999999999988763110
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHh
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLG 325 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~~L~ 325 (356)
.. ......+.++||++|++ .+++.+|+.+++.... .... +.+.++++
T Consensus 74 ------~~---------------~~~~~~~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (235)
T 3tif_A 74 ------DD---------------ELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130 (235)
T ss_dssp ------HH---------------HHHHHHHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH
T ss_pred ------HH---------------HHHHHhhccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 00 00000123599999997 4788899999885421 2222 34667899
Q ss_pred hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.+...++++.+|||||||||+||++++
T Consensus 131 ~~~l~~~~~~~~~~~LSgGq~QRv~iAral~ 161 (235)
T 3tif_A 131 MAELEERFANHKPNQLSGGQQQRVAIARALA 161 (235)
T ss_dssp HTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred HCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 9999875434578999999999999999974
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=5.7e-31 Score=249.28 Aligned_cols=150 Identities=27% Similarity=0.329 Sum_probs=119.0
Q ss_pred CCCCcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCe
Q psy2684 175 LPPPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESR 251 (356)
Q Consensus 175 ~~~~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ 251 (356)
..+++++++|+++.|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~-- 97 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE-- 97 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH--
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--
Confidence 345789999999999532 358999999999999999999999999999999999999999999999988641100
Q ss_pred eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHH
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQL 324 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L 324 (356)
... ...+.+|||+||++ .+++.+|+.+++... .+.+. +.+.++|
T Consensus 98 --------------------------~~~-~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL 148 (366)
T 3tui_C 98 --------------------------SEL-TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL 148 (366)
T ss_dssp --------------------------HHH-HHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred --------------------------HHH-HHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 000 00124699999997 488899999988643 33333 3467889
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+|+.+..+. ++.+|||||||||+|||+|+
T Consensus 149 ~~vgL~~~~~~-~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 149 SLVGLGDKHDS-YPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHTCGGGTTC-CTTTSCHHHHHHHHHHHHTT
T ss_pred HHcCCchHhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 99999877655 67999999999999999985
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=2.5e-30 Score=246.36 Aligned_cols=140 Identities=24% Similarity=0.369 Sum_probs=118.1
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~y-g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~----------- 70 (381)
T 3rlf_A 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT----------- 70 (381)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC-----------
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC-----------
Confidence 58999999999 677899999999999999999999999999999999999999999999998876310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
.+ ..++|||+||++ .+++.+|+.|++... .+.+. +.+.++|+.+++..
T Consensus 71 ---------------~~--------~~r~ig~VfQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (381)
T 3rlf_A 71 ---------------PP--------AERGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH 125 (381)
T ss_dssp ---------------CG--------GGSCEEEECTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred ---------------CH--------HHCCEEEEecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 00 124699999997 589999999998542 33443 35678899999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+|+
T Consensus 126 ~~~r-~p~~LSGGqrQRVaiArAL~ 149 (381)
T 3rlf_A 126 LLDR-KPKALSGGQRQRVAIGRTLV 149 (381)
T ss_dssp GTTC-CGGGSCHHHHHHHHHHHHHH
T ss_pred hhcC-ChhHCCHHHHHHHHHHHHHH
Confidence 7765 67999999999999999973
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=2.3e-30 Score=231.25 Aligned_cols=147 Identities=27% Similarity=0.347 Sum_probs=116.7
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~y-~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 72 (224)
T 2pcj_A 3 EILRAENIKKVI-RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN--------- 72 (224)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC---------
T ss_pred cEEEEEeEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC---------
Confidence 378999999999 5677999999999999999999999999999999999999999999999987653100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLP 330 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~ 330 (356)
........+.++||++|++ .+++..|+.|++... .+.. .+.+.++++.+|+.
T Consensus 73 -------------------~~~~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 131 (224)
T 2pcj_A 73 -------------------EKELSLLRNRKLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG 131 (224)
T ss_dssp -------------------HHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT
T ss_pred -------------------HHHHHHHHhCcEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 0000000014699999986 477889999987542 2322 23467889999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..+. ++.+|||||||||+||++++
T Consensus 132 ~~~~~-~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 132 DKLSR-KPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp TCTTC-CGGGSCHHHHHHHHHHHHTT
T ss_pred hhhhC-ChhhCCHHHHHHHHHHHHHH
Confidence 76654 67999999999999999974
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=4.8e-30 Score=234.19 Aligned_cols=145 Identities=28% Similarity=0.418 Sum_probs=117.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 23 ~~l~i~~l~~~y-~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~-------- 92 (263)
T 2olj_A 23 QMIDVHQLKKSF-GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK-D-------- 92 (263)
T ss_dssp CSEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSST-T--------
T ss_pred heEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCc-c--------
Confidence 479999999999 567799999999999999999999999999999999999999999999998765200 0
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l 329 (356)
... ...+.++||++|++ .+++.+|+.|++... .+.+. +.+.++++.+|+
T Consensus 93 --------------------~~~-~~~~~~i~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L 149 (263)
T 2olj_A 93 --------------------TNL-NKVREEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL 149 (263)
T ss_dssp --------------------CCH-HHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC
T ss_pred --------------------ccH-HHHhCcEEEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 000 00124699999986 478889999987542 23332 346788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+. ++.+|||||||||+||++++
T Consensus 150 ~~~~~~-~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 150 KDKAHA-YPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp GGGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred chHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 876654 77999999999999999975
No 20
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.96 E-value=2.7e-30 Score=244.59 Aligned_cols=144 Identities=31% Similarity=0.391 Sum_probs=119.4
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+.++++++|+++.|+++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-------- 82 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL-------- 82 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC--------
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC--------
Confidence 456899999999994345799999999999999999999999999999999999999999999998775310
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG 328 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~ 328 (356)
. ..++++||+||++ .+++.+|+.|++... .+.+. +++.++|+.+|
T Consensus 83 ------------------~--------~~~r~ig~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~g 134 (355)
T 1z47_A 83 ------------------P--------PQKRNVGLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR 134 (355)
T ss_dssp ------------------C--------GGGSSEEEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred ------------------C--------hhhCcEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 0 0134699999987 488999999998542 23332 35678999999
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+..++ ++.+|||||||||+|||+|+
T Consensus 135 L~~~~~r-~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 135 LESYANR-FPHELSGGQQQRVALARALA 161 (355)
T ss_dssp CGGGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred ChhHhcC-CcccCCHHHHHHHHHHHHHH
Confidence 9887665 67999999999999999975
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=5.6e-30 Score=242.93 Aligned_cols=140 Identities=25% Similarity=0.340 Sum_probs=117.7
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~----------- 70 (359)
T 2yyz_A 3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI----------- 70 (359)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC-----------
Confidence 58999999999 567799999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---CC----HHHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LP----YEKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~~----~~~~~~~L~~~~l~~ 331 (356)
.+ .++++||+||++ .+++.+|+.+++..... .+ .+++.++|+.+++.+
T Consensus 71 ---------------~~--------~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (359)
T 2yyz_A 71 ---------------PP--------KYREVGMVFQNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN 125 (359)
T ss_dssp ---------------CG--------GGTTEEEECSSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG
T ss_pred ---------------Ch--------hhCcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 00 124699999987 48899999999875322 22 245778999999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+++
T Consensus 126 ~~~r-~~~~LSgGq~QRvalArAL~ 149 (359)
T 2yyz_A 126 LLDR-KPTQLSGGQQQRVALARALV 149 (359)
T ss_dssp GTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred HhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 7665 67999999999999999974
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=4.3e-30 Score=235.09 Aligned_cols=144 Identities=26% Similarity=0.287 Sum_probs=117.9
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 9 ~~~l~~~~l~~~~-~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-------- 79 (266)
T 4g1u_C 9 VALLEASHLHYHV-QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-------- 79 (266)
T ss_dssp CCEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC--------
T ss_pred cceEEEEeEEEEe-CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC--------
Confidence 3589999999999 6778999999999999999999999999999999999999999999999988763110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-----CCHHHHHHHHhhcCCCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-----LPYEKSRRQLGMFGLPS 331 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-----~~~~~~~~~L~~~~l~~ 331 (356)
. ...+..++|++|++. ++...|+.|++..... ...+.+.++++.+++.+
T Consensus 80 --------------------~----~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 133 (266)
T 4g1u_C 80 --------------------P----KALARTRAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA 133 (266)
T ss_dssp --------------------H----HHHHHHEEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST
T ss_pred --------------------H----HHHhheEEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh
Confidence 0 001235899999874 5567899999865321 12356788999999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+||++++
T Consensus 134 ~~~~-~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 134 LAQR-DYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp TTTS-BGGGCCHHHHHHHHHHHHHH
T ss_pred HhcC-CcccCCHHHHHHHHHHHHHh
Confidence 7654 67999999999999999974
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=1e-29 Score=225.10 Aligned_cols=136 Identities=24% Similarity=0.365 Sum_probs=115.2
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
.+|+++|+++.| ++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 9 ~~l~~~~ls~~y-~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------------ 74 (214)
T 1sgw_A 9 SKLEIRDLSVGY-DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------------ 74 (214)
T ss_dssp CEEEEEEEEEES-SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------------
T ss_pred ceEEEEEEEEEe-CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------------
Confidence 579999999999 45 8999999999999999999999999999999999999999999999876541
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC--CCHHHHHHHHhhcCCCCc
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN--LPYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~--~~~~~~~~~L~~~~l~~~ 332 (356)
..+..++|++|++. +++..|+.+++... .+ ...+.+.++++.+|+...
T Consensus 75 -------------------------~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 127 (214)
T 1sgw_A 75 -------------------------KVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 127 (214)
T ss_dssp -------------------------GGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred -------------------------hhcCcEEEEeCCCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC
Confidence 01346999999873 67888999987532 12 234567889999999876
Q ss_pred cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 ~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.+|||||||||+||++++
T Consensus 128 --~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 128 --KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp --TSBGGGSCHHHHHHHHHHHHTT
T ss_pred --CCChhhCCHHHHHHHHHHHHHH
Confidence 4578999999999999999975
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=5.7e-30 Score=233.96 Aligned_cols=156 Identities=26% Similarity=0.356 Sum_probs=116.9
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 5 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------~ 75 (262)
T 1b0u_A 5 NKLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVR--------D 75 (262)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEE--------C
T ss_pred ceEEEeeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccc--------c
Confidence 479999999999 5677999999999999999999999999999999999999999999999987652000 0
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l 329 (356)
+..-+ ........ ...+.++||++|++ .+++.+|+.+++... .+.+. +.+.++|+.+|+
T Consensus 76 ~~~~~----------~~~~~~~~-~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 76 KDGQL----------KVADKNQL-RLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI 142 (262)
T ss_dssp TTSSE----------EESCHHHH-HHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred ccccc----------cccChhhH-HHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 00000 00000000 00124699999986 478889999988542 23332 346788999999
Q ss_pred CCc-cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSY-AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~-~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+. ..+ ++.+|||||||||+||++++
T Consensus 143 ~~~~~~~-~~~~LSgGq~qRv~lAraL~ 169 (262)
T 1b0u_A 143 DERAQGK-YPVHLSGGQQQRVSIARALA 169 (262)
T ss_dssp CHHHHTS-CGGGSCHHHHHHHHHHHHHH
T ss_pred CchhhcC-CcccCCHHHHHHHHHHHHHh
Confidence 876 554 67999999999999999973
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.96 E-value=7.7e-30 Score=242.24 Aligned_cols=140 Identities=26% Similarity=0.385 Sum_probs=117.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~----------- 70 (362)
T 2it1_A 3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL----------- 70 (362)
T ss_dssp CEEEEEEEEES-SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEEEEeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC-----------
Confidence 58999999999 567799999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
.+ .++++||+||++ .+++.+|+.+++... .+.+. +++.++++.+++.+
T Consensus 71 ---------------~~--------~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (362)
T 2it1_A 71 ---------------PP--------KDRNVGLVFQNW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK 125 (362)
T ss_dssp ---------------CG--------GGTTEEEECTTC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred ---------------CH--------hHCcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 00 124699999987 488999999998542 23332 34678899999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+|+
T Consensus 126 ~~~r-~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 126 LLNR-YPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp CTTC-CGGGSCHHHHHHHHHHHHHT
T ss_pred HhhC-ChhhCCHHHHHHHHHHHHHH
Confidence 7765 67999999999999999974
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=6.1e-30 Score=242.65 Aligned_cols=145 Identities=22% Similarity=0.348 Sum_probs=117.9
Q ss_pred cEEEecceeeeCCCcc--ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~--~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++|+++.| ++.. +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~l~i~~l~~~y-~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-------- 73 (353)
T 1oxx_K 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG-------- 73 (353)
T ss_dssp CEEEEEEEEEE-GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT--------
T ss_pred EEEEEeEEEEE-CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc--------
Confidence 58999999999 5567 999999999999999999999999999999999999999999999987753100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l 329 (356)
.......++++||+||++ .+++.+|+.+++.... +.+. +.+.++|+.+|+
T Consensus 74 ---------------------~~~~~~~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L 130 (353)
T 1oxx_K 74 ---------------------KLIVPPEDRKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI 130 (353)
T ss_dssp ---------------------EESSCGGGSCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC
T ss_pred ---------------------cccCChhhCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 000001135799999987 4889999999986532 2232 356789999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..++ ++.+|||||||||+|||+|+
T Consensus 131 ~~~~~~-~~~~LSGGq~QRvalAraL~ 156 (353)
T 1oxx_K 131 HHVLNH-FPRELSGAQQQRVALARALV 156 (353)
T ss_dssp GGGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred chHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 887665 67999999999999999974
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=9.6e-30 Score=231.42 Aligned_cols=143 Identities=21% Similarity=0.302 Sum_probs=116.8
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
-++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 13 ~~~l~i~~l~~~y-~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--------- 82 (256)
T 1vpl_A 13 MGAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--------- 82 (256)
T ss_dssp -CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC---------
T ss_pred CCeEEEEEEEEEE-CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc---------
Confidence 3579999999999 567899999999999999999999999999999999999999999999998765210
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l 329 (356)
....+.++||++|++ .+++..|+.|++... .+... +.+.++++.+|+
T Consensus 83 ------------------------~~~~~~~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL 136 (256)
T 1vpl_A 83 ------------------------PHEVRKLISYLPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 136 (256)
T ss_dssp ------------------------HHHHHTTEEEECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_pred ------------------------HHHHhhcEEEEcCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 000124699999987 367888999987542 23332 346788999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+...+ ++.+|||||||||+||++++
T Consensus 137 ~~~~~~-~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 137 GEKIKD-RVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp GGGGGS-BGGGCCHHHHHHHHHHHHHT
T ss_pred chHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 876654 77999999999999999974
No 28
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=9.8e-30 Score=242.37 Aligned_cols=140 Identities=24% Similarity=0.377 Sum_probs=113.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~----------- 78 (372)
T 1v43_A 11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL----------- 78 (372)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred eEEEEEEEEEE-CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC-----------
Confidence 58999999999 567799999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~ 331 (356)
.+ .++++||+||++ .+++.+|+.+++.... +.+. +++.++|+.+++.+
T Consensus 79 ---------------~~--------~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 133 (372)
T 1v43_A 79 ---------------PP--------KDRNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE 133 (372)
T ss_dssp ---------------CG--------GGGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred ---------------Ch--------hhCcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 00 124699999986 4889999999986532 2332 34678899999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+|+
T Consensus 134 ~~~r-~~~~LSGGq~QRvalArAL~ 157 (372)
T 1v43_A 134 LLNR-YPAQLSGGQRQRVAVARAIV 157 (372)
T ss_dssp GTTS-CTTTCCSSCHHHHHHHHHHT
T ss_pred HhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 7665 67999999999999999974
No 29
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=5.9e-30 Score=231.01 Aligned_cols=145 Identities=22% Similarity=0.318 Sum_probs=115.5
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 4 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------- 74 (240)
T 1ji0_A 4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP-------- 74 (240)
T ss_dssp SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC--------
T ss_pred CceEEEEeEEEEE-CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC--------
Confidence 3579999999999 5677999999999999999999999999999999999999999999999987653100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHhhcC-C
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFG-L 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~----~~~~~~~L~~~~-l 329 (356)
.... .+.++||++|++ .+++..|+.|++.... ... .+.+.++++.++ +
T Consensus 75 --------------------~~~~---~~~~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l 129 (240)
T 1ji0_A 75 --------------------AHVI---NRMGIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL 129 (240)
T ss_dssp --------------------HHHH---HHTTEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH
T ss_pred --------------------HHHH---HhCCEEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH
Confidence 0000 123599999986 4778889999986532 111 234567888884 8
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+...+ ++.+|||||||||+||++++
T Consensus 130 ~~~~~~-~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 130 KERLKQ-LGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HTTTTS-BSSSSCHHHHHHHHHHHHHT
T ss_pred hhHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 766654 67999999999999999975
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=3.9e-30 Score=234.51 Aligned_cols=144 Identities=23% Similarity=0.293 Sum_probs=116.0
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 6 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------- 75 (257)
T 1g6h_A 6 EILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE--------- 75 (257)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred cEEEEeeeEEEE-CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 479999999999 5677999999999999999999999999999999999999999999999987652100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----C-----------CC----H
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-----------LP----Y 317 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~-----------~~----~ 317 (356)
.....+..+||++|++ .+++..|+.|++.... + .. .
T Consensus 76 ----------------------~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (257)
T 1g6h_A 76 ----------------------PAELYHYGIVRTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV 131 (257)
T ss_dssp ----------------------HHHHHHHTEEECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH
T ss_pred ----------------------HHHHHhCCEEEEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH
Confidence 0000123599999987 4677889999986431 1 11 1
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+.++++.+|+.+...+ ++.+|||||||||+||++++
T Consensus 132 ~~~~~~l~~~~l~~~~~~-~~~~LSgGqkQrv~iAraL~ 169 (257)
T 1g6h_A 132 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALM 169 (257)
T ss_dssp HHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhCC-CchhCCHHHHHHHHHHHHHH
Confidence 346788999999876654 77999999999999999973
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=1.1e-29 Score=242.47 Aligned_cols=146 Identities=24% Similarity=0.352 Sum_probs=117.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--------- 72 (372)
T 1g29_1 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK--------- 72 (372)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG---------
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc---------
Confidence 58999999999 56779999999999999999999999999999999999999999999999877531000
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS 331 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~ 331 (356)
+......++++||+||++ .+++.+|+.+++... .+.+. +.+.++|+.+++.+
T Consensus 73 -------------------~~~~~~~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 131 (372)
T 1g29_1 73 -------------------GIFVPPKDRDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE 131 (372)
T ss_dssp -------------------TEECCGGGSSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred -------------------cccCCHhHCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 000001134699999986 488999999998542 23332 34678899999988
Q ss_pred ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++ ++.+|||||||||+|||+|+
T Consensus 132 ~~~r-~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 132 LLNR-KPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp GTTC-CGGGSCHHHHHHHHHHHHHH
T ss_pred HhcC-CcccCCHHHHHHHHHHHHHh
Confidence 7665 67999999999999999973
No 32
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=1.6e-29 Score=239.03 Aligned_cols=139 Identities=21% Similarity=0.311 Sum_probs=116.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
|++++|+++.| ++. +++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ml~~~~l~~~y-~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~----------- 67 (348)
T 3d31_A 1 MIEIESLSRKW-KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL----------- 67 (348)
T ss_dssp CEEEEEEEEEC-SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred CEEEEEEEEEE-CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-----------
Confidence 47899999999 556 99999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CHHHHHHHHhhcCCCCccc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~~~~~~~L~~~~l~~~~~ 334 (356)
. ..++++||+||++ .+++.+|+.|++... .+. ..+++.++|+.+++.+..+
T Consensus 68 ---------------~--------~~~r~ig~v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~ 122 (348)
T 3d31_A 68 ---------------S--------PEKHDIAFVYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD 122 (348)
T ss_dssp ---------------C--------HHHHTCEEECTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT
T ss_pred ---------------c--------hhhCcEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc
Confidence 0 0124699999987 488999999998542 222 2266788999999988776
Q ss_pred cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~~~~~~LSGGqkqRvalA~~~l 356 (356)
+ ++.+|||||||||+|||+|+
T Consensus 123 ~-~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 123 R-NPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp S-CGGGSCHHHHHHHHHHHHTT
T ss_pred C-ChhhCCHHHHHHHHHHHHHH
Confidence 5 67999999999999999975
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=1e-29 Score=234.02 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=115.1
Q ss_pred CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
..++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 18 ~~~~l~~~~l~~~y-~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-------- 88 (279)
T 2ihy_A 18 SHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKV-------- 88 (279)
T ss_dssp -CEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC----------
T ss_pred CCceEEEEeEEEEE-CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccc--------
Confidence 34579999999999 567899999999999999999999999999999999999999999999998664200
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-CC---HHHHHHHH
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-LP---YEKSRRQL 324 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~~---~~~~~~~L 324 (356)
+ ... ...+.++||++|++...+....|+.|++.... . .. .+.+.++|
T Consensus 89 ------~---------------~~~-~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l 146 (279)
T 2ihy_A 89 ------G---------------YSA-ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLL 146 (279)
T ss_dssp ----------------------CCH-HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHH
T ss_pred ------c---------------CCH-HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHH
Confidence 0 000 00124699999987433444579999885421 1 11 23467889
Q ss_pred hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+|+.+...+ ++.+|||||||||+||++++
T Consensus 147 ~~~gl~~~~~~-~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 147 KLVGMSAKAQQ-YIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp HHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHH
T ss_pred HHcCChhHhcC-ChhhCCHHHHHHHHHHHHHh
Confidence 99999876654 77999999999999999973
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=8.6e-29 Score=223.12 Aligned_cols=137 Identities=26% Similarity=0.372 Sum_probs=112.5
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.| ++ +|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ml~~~~l~~~y-~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 65 (240)
T 2onk_A 1 MFLKVRAEKRL-GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL----------- 65 (240)
T ss_dssp CCEEEEEEEEE-TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred CEEEEEEEEEe-CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 47899999999 43 59999999999 99999999999999999999999999999999998765210
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCC-----CHHHHHHHHhhcCCCCcc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~-----~~~~~~~~L~~~~l~~~~ 333 (356)
...+.++||++|++ .+++.+|+.|++...... ..+.+.++++.+|+.+..
T Consensus 66 -----------------------~~~~~~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 120 (240)
T 2onk_A 66 -----------------------PPERRGIGFVPQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL 120 (240)
T ss_dssp -----------------------CTTTSCCBCCCSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT
T ss_pred -----------------------chhhCcEEEEcCCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh
Confidence 01134699999986 478889999998643221 124567899999998766
Q ss_pred ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.. ++.+|||||||||+||++++
T Consensus 121 ~~-~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 121 DR-KPARLSGGERQRVALARALV 142 (240)
T ss_dssp TC-CGGGSCHHHHHHHHHHHHHT
T ss_pred cC-ChhhCCHHHHHHHHHHHHHH
Confidence 54 67999999999999999974
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=5.2e-29 Score=225.24 Aligned_cols=143 Identities=27% Similarity=0.342 Sum_probs=113.5
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI----------- 69 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT-----------
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC-----------
Confidence 478999999995456799999999999999999999999999999999999999999999998775310
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT- 335 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~~~~~~~~~~~L~~~~l~~~~~~- 335 (356)
. ....+.++||++|++. +++ .|+.+++... ......++.++++.+++.+....
T Consensus 70 ---------------~------~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 125 (243)
T 1mv5_A 70 ---------------S------LENWRSQIGFVSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125 (243)
T ss_dssp ---------------S------CSCCTTTCCEECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSS
T ss_pred ---------------C------HHHHHhhEEEEcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhC
Confidence 0 0112346999999973 565 4999987542 23345667788888888765432
Q ss_pred ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ---------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ---------~~~~~LSGGqkqRvalA~~~l 356 (356)
+++.+|||||||||+|||+++
T Consensus 126 ~~gl~~~~~~~~~~LSgGq~qrv~lAral~ 155 (243)
T 1mv5_A 126 PDQLNTEVGERGVKISGGQRQRLAIARAFL 155 (243)
T ss_dssp TTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence 245799999999999999973
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=1.1e-28 Score=226.05 Aligned_cols=141 Identities=26% Similarity=0.346 Sum_probs=114.2
Q ss_pred cEEEecceeeeC-CC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684 179 VLGLHDVTFGYP-GG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 179 ~l~~~~l~~~~~-~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
+++++|+++.|+ ++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-------- 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG-------- 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH--------
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch--------
Confidence 589999999995 23 569999999999999999999999999999999999999999999999866420
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C----CHHHHHHHHhhcC
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L----PYEKSRRQLGMFG 328 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~----~~~~~~~~L~~~~ 328 (356)
. ..+.++||++|++.. ++...|+.+++..... . ..+.+.++++.+|
T Consensus 74 -------------------------~--~~~~~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~g 125 (266)
T 2yz2_A 74 -------------------------Y--EIRRNIGIAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG 125 (266)
T ss_dssp -------------------------H--HHGGGEEEECSSGGG-GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTT
T ss_pred -------------------------H--HhhhhEEEEeccchh-hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence 0 112469999998632 3456899998864311 1 2356788999999
Q ss_pred CC--CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 329 LP--SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 329 l~--~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+. +..+. ++.+|||||||||+||++++
T Consensus 126 l~~~~~~~~-~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 126 LDFDSFKDR-VPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp CCHHHHTTC-CGGGSCHHHHHHHHHHHHHT
T ss_pred cCCcccccC-ChhhCCHHHHHHHHHHHHHH
Confidence 98 66554 67999999999999999974
No 37
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=1.1e-28 Score=223.58 Aligned_cols=142 Identities=23% Similarity=0.377 Sum_probs=110.3
Q ss_pred EEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 180 LGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 180 l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
++++|+++.|+ +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~---------- 77 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD---------- 77 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC----------
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----------
Confidence 78999999994 3467999999999999999999999999999999999999999999999987753100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccc---
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAH--- 334 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~--- 334 (356)
. ...+.++||++|++. +++ .|+.+++.... ....+++.++++.+++.....
T Consensus 78 ---------------------~-~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 132 (247)
T 2ff7_A 78 ---------------------P-NWLRRQVGVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132 (247)
T ss_dssp ---------------------H-HHHHHHEEEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTST
T ss_pred ---------------------H-HHHHhcEEEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 0 001246999999873 554 59999985432 234455667777777653322
Q ss_pred -------cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 -------TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 -------~~~~~~LSGGqkqRvalA~~~l 356 (356)
.+++.+|||||||||+|||+++
T Consensus 133 ~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 133 EGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp TGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred chhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 1246899999999999999975
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=8.1e-29 Score=230.38 Aligned_cols=143 Identities=29% Similarity=0.358 Sum_probs=111.7
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
..++++||+|.|+++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~--------- 122 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT--------- 122 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC---------
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC---------
Confidence 35899999999966678999999999999999999999999999999999999999999999998863100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCC-----
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPS----- 331 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~----- 331 (356)
....+.+|||++|++. +| ..|+.+++.... .....++++.++.+++..
T Consensus 123 -----------------------~~~~r~~i~~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~l 176 (306)
T 3nh6_A 123 -----------------------QASLRSHIGVVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176 (306)
T ss_dssp -----------------------HHHHHHTEEEECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHS
T ss_pred -----------------------HHHHhcceEEEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhc
Confidence 0011346999999973 56 459999986533 334555666666555532
Q ss_pred ------ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 ------YAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ------~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... .+..+|||||||||+|||+++
T Consensus 177 p~gl~t~~~-~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 177 PEGYRTQVG-ERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp TTGGGCEES-TTSBCCCHHHHHHHHHHHHHH
T ss_pred cchhhhHhc-CCcCCCCHHHHHHHHHHHHHH
Confidence 222 245789999999999999974
No 39
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=1.4e-28 Score=225.39 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=111.9
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeee
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ial 254 (356)
.++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++....
T Consensus 18 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~------ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS------ 90 (267)
T ss_dssp --CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC------
T ss_pred CceEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC------
Confidence 4579999999999 567899999999999999999999999999999999999 5799999999987753100
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cC---CCH----HHH
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FN---LPY----EKS 320 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~---~~~----~~~ 320 (356)
.....+..++|++|++ .+++.+|+.+++... .. .+. ..+
T Consensus 91 -------------------------~~~~~~~~i~~v~Q~~--~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (267)
T 2zu0_C 91 -------------------------PEDRAGEGIFMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLM 143 (267)
T ss_dssp -------------------------HHHHHHHTEEEECSSC--CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHH
T ss_pred -------------------------HHHHhhCCEEEEccCc--cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHH
Confidence 0000013489999987 467888998876431 11 122 346
Q ss_pred HHHHhhcCCCCccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684 321 RRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTL 356 (356)
Q Consensus 321 ~~~L~~~~l~~~~~~~~~~-~LSGGqkqRvalA~~~l 356 (356)
.++++.+|+.....++++. +|||||||||+||++++
T Consensus 144 ~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 144 EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp HHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 7889999997433334666 59999999999999973
No 40
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=4.6e-28 Score=220.12 Aligned_cols=130 Identities=28% Similarity=0.394 Sum_probs=108.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------------------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------------------- 64 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------------
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------------
Confidence 6899999999941577999999999999999999999999999999999999999998852
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----C----CC---HHHHHHHHhhc
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N----LP---YEKSRRQLGMF 327 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~----~~---~~~~~~~L~~~ 327 (356)
+.++||++|++. +++..|+.+++.... + .. .+.+.++++.+
T Consensus 65 --------------------------~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (253)
T 2nq2_C 65 --------------------------YQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116 (253)
T ss_dssp --------------------------CSCEEEECSCCC--CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHT
T ss_pred --------------------------eccEEEEcCCCc--cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 135899999873 667889999986431 1 12 23467889999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 328 GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
|+.+.... ++.+|||||||||+||++++
T Consensus 117 ~l~~~~~~-~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 117 NLTHLAKR-EFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp TCGGGTTS-BGGGSCHHHHHHHHHHHHHH
T ss_pred CChHHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence 99876654 67999999999999999973
No 41
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=2.2e-28 Score=224.37 Aligned_cols=143 Identities=31% Similarity=0.404 Sum_probs=110.4
Q ss_pred CcEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 178 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 178 ~~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.+++++|+++.|++ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~------- 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD------- 87 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-------
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC-------
Confidence 47999999999943 167999999999999999999999999999999999999999999999987753100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCH-HH---------HHHHH
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPY-EK---------SRRQL 324 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~-~~---------~~~~L 324 (356)
....+.+|||++|++. +++ .|+.|++..... ... .. +.+++
T Consensus 88 -------------------------~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (271)
T 2ixe_A 88 -------------------------HHYLHTQVAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFI 139 (271)
T ss_dssp -------------------------HHHHHHHEEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHH
T ss_pred -------------------------HHHHhccEEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHH
Confidence 0001246999999973 565 599999865321 111 11 23456
Q ss_pred hhc--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 325 GMF--GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 325 ~~~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+.+ |+...... ++.+|||||||||+|||+|+
T Consensus 140 ~~l~~gl~~~~~~-~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 140 SGFPQGYDTEVGE-TGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HHSTTGGGSBCCG-GGTTSCHHHHHHHHHHHHHT
T ss_pred HhhhcchhhhhcC-CcCCCCHHHHHHHHHHHHHh
Confidence 666 67665554 67999999999999999975
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=2.1e-28 Score=222.20 Aligned_cols=143 Identities=27% Similarity=0.371 Sum_probs=108.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
+++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~-------- 73 (250)
T 2d2e_A 3 QLEIRDLWASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS-------- 73 (250)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC--------
T ss_pred eEEEEeEEEEE-CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC--------
Confidence 68999999999 567899999999999999999999999999999999999 8999999999987753100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cC--CC----HHHHHHHHhh
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FN--LP----YEKSRRQLGM 326 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~--~~----~~~~~~~L~~ 326 (356)
... ..+..++|++|++ .+++.+|+.+++... .+ .. ...+.++++.
T Consensus 74 --------------------~~~---~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (250)
T 2d2e_A 74 --------------------PDE---RARKGLFLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL 128 (250)
T ss_dssp --------------------HHH---HHHTTBCCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred --------------------HHH---HHhCcEEEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence 000 0012488999987 367888999987431 12 12 2346778999
Q ss_pred cCCC-CccccCCCCC-CChHHHHHHHHHHHcC
Q psy2684 327 FGLP-SYAHTIPIRD-LSGGQKARVALAELTL 356 (356)
Q Consensus 327 ~~l~-~~~~~~~~~~-LSGGqkqRvalA~~~l 356 (356)
+|+. +..+ +++.+ |||||||||+||++++
T Consensus 129 ~gl~~~~~~-~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 129 LDWDESYLS-RYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp HTCCGGGGG-SBTTCC----HHHHHHHHHHHH
T ss_pred cCCChhHhc-CCcccCCCHHHHHHHHHHHHHH
Confidence 9995 5444 47788 9999999999999973
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=4.6e-28 Score=219.48 Aligned_cols=137 Identities=25% Similarity=0.247 Sum_probs=112.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
+++++|+++. .+|+++||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++....
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~---------- 67 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS---------- 67 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC----------
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC----------
Confidence 6899999975 5899999999999999999999999999999999999999 99999987652100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
....+.++||++|++. +++..|+.|++.... ....+.+.++++.+|+.+..++
T Consensus 68 ----------------------~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 122 (249)
T 2qi9_C 68 ----------------------ATKLALHRAYLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR- 122 (249)
T ss_dssp ----------------------HHHHHHHEEEECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-
T ss_pred ----------------------HHHHhceEEEECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-
Confidence 0001246999999874 677889999986432 1235667889999999876654
Q ss_pred CCCCCChHHHHHHHHHHHcC
Q psy2684 337 PIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~LSGGqkqRvalA~~~l 356 (356)
++.+|||||||||+||++++
T Consensus 123 ~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 123 STNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp BGGGCCHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 67999999999999999974
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=8.5e-28 Score=219.31 Aligned_cols=136 Identities=21% Similarity=0.347 Sum_probs=112.2
Q ss_pred cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
+++++|+++.|+++ +.+|+++||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.++..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~--------- 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK--------- 69 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGG---------
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcc---------
Confidence 47899999999431 679999999999 9999999999999999999999999 999999999876520
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEE-EeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCC-
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-KFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLP- 330 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig-~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~- 330 (356)
. .. +.+++ |++|++. + ..|+.+++... .....+.+.++++.+|+.
T Consensus 70 ------------------------~-~~-~~~i~~~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~ 119 (263)
T 2pjz_A 70 ------------------------I-RN-YIRYSTNLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119 (263)
T ss_dssp ------------------------C-SC-CTTEEECCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG
T ss_pred ------------------------h-HH-hhheEEEeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh
Confidence 0 11 34699 9999874 3 78999987542 234566788999999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+... +++.+|||||||||+||++++
T Consensus 120 ~~~~-~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 120 EILR-RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp GGGG-SBGGGSCHHHHHHHHHHHHHH
T ss_pred hHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 6555 477999999999999999973
No 45
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.3e-28 Score=233.24 Aligned_cols=142 Identities=26% Similarity=0.322 Sum_probs=115.6
Q ss_pred CcEEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|+ ++..+|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~-------- 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT-------- 88 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC--------
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC--------
Confidence 4699999999995 34679999999999999999999999999999999999998 8999999988763100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 336 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 336 (356)
....++++||+||++. +|+ .|+.+++........++++++++.+++.+...+
T Consensus 89 ------------------------~~~~rr~ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~- 140 (390)
T 3gd7_A 89 ------------------------LEQWRKAFGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQ- 140 (390)
T ss_dssp ------------------------HHHHHHTEEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTT-
T ss_pred ------------------------hHHHhCCEEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhh-
Confidence 0001346999999973 665 699999854334556778899999999876665
Q ss_pred CCCC-----------CChHHHHHHHHHHHcC
Q psy2684 337 PIRD-----------LSGGQKARVALAELTL 356 (356)
Q Consensus 337 ~~~~-----------LSGGqkqRvalA~~~l 356 (356)
++.. |||||||||+|||+|+
T Consensus 141 ~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp STTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCHHHHHHHHHHHHHh
Confidence 4566 9999999999999973
No 46
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=1.7e-27 Score=213.32 Aligned_cols=131 Identities=27% Similarity=0.363 Sum_probs=102.0
Q ss_pred CcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.+++++|+++.|++ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 36899999999952 46799999999999999999999999999999999999999999998863
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcc---
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA--- 333 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~--- 333 (356)
+++|++|++. +++. |+.|++............+.++.+++....
T Consensus 70 ------------------------------~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (229)
T 2pze_A 70 ------------------------------RISFCSQFSW--IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116 (229)
T ss_dssp ------------------------------CEEEECSSCC--CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTS
T ss_pred ------------------------------EEEEEecCCc--ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhC
Confidence 3899999873 5664 999998653222333334444444443211
Q ss_pred -------ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 -------HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 -------~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+++.+|||||||||+|||+++
T Consensus 117 ~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 117 AEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp TTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 11245899999999999999973
No 47
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=214.09 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=100.5
Q ss_pred cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
+++++|+++.|++ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 5899999999943 46799999999999999999999999999999999999999999998863
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcC------CCC
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG------LPS 331 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~------l~~ 331 (356)
++||++|++. + ...|+.+++...........++.++.++ +.+
T Consensus 67 -----------------------------~i~~v~Q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 114 (237)
T 2cbz_A 67 -----------------------------SVAYVPQQAW--I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP 114 (237)
T ss_dssp -----------------------------CEEEECSSCC--C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTST
T ss_pred -----------------------------EEEEEcCCCc--C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhcc
Confidence 3799999863 3 4779999986533222222333333333 211
Q ss_pred c----cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 332 Y----AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 332 ~----~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ...+++.+|||||||||+|||+++
T Consensus 115 ~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 115 SGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp TGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1 113467899999999999999973
No 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=2.7e-27 Score=216.01 Aligned_cols=143 Identities=28% Similarity=0.301 Sum_probs=109.1
Q ss_pred CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684 178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv 255 (356)
.+++++|+++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.++....
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~------- 87 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN------- 87 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC-------
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC-------
Confidence 469999999999532 4699999999999999999999999999999999999987 899999987753100
Q ss_pred cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcc-
Q psy2684 256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA- 333 (356)
Q Consensus 256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~- 333 (356)
....+.+++|++|++. +++ .|+.+++.... ....+++.+.++.+++....
T Consensus 88 -------------------------~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~ 139 (260)
T 2ghi_A 88 -------------------------RNSIRSIIGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIE 139 (260)
T ss_dssp -------------------------HHHHHTTEEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHhccEEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHH
Confidence 0001246999999973 554 59999986432 23445566777777763321
Q ss_pred ---------ccCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 ---------HTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ---------~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..+++.+|||||||||+|||+++
T Consensus 140 ~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 140 ALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred hccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 12356899999999999999973
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.93 E-value=5.2e-26 Score=230.17 Aligned_cols=144 Identities=28% Similarity=0.336 Sum_probs=114.1
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~--------- 410 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY--------- 410 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhC---------
Confidence 469999999999543 6799999999999999999999999999999999999999999999999876310
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~ 334 (356)
. ....+.++||++|++. +++ .|+.|++.... +.+.+++++.++.+++.+...
T Consensus 411 -------------------~----~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (582)
T 3b5x_A 411 -------------------K----LTNLRRHFALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464 (582)
T ss_pred -------------------C----HHHHhcCeEEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHH
Confidence 0 0011346999999973 565 49999986532 345667788888887754322
Q ss_pred c----------CCCCCCChHHHHHHHHHHHcC
Q psy2684 335 T----------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~----------~~~~~LSGGqkqRvalA~~~l 356 (356)
. .+..+||||||||++|||+++
T Consensus 465 ~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred hCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 2 134799999999999999974
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=4.8e-26 Score=230.43 Aligned_cols=144 Identities=28% Similarity=0.340 Sum_probs=114.2
Q ss_pred CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-------- 411 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-------- 411 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC--------
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC--------
Confidence 469999999999533 67999999999999999999999999999999999999999999999998763100
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAH 334 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~ 334 (356)
....+.++||++|++. +++ .|+.|++.... ..+.+++++.++.+++.+...
T Consensus 412 ------------------------~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~ 464 (582)
T 3b60_A 412 ------------------------LASLRNQVALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464 (582)
T ss_dssp ------------------------HHHHHHTEEEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHH
T ss_pred ------------------------HHHHHhhCeEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHH
Confidence 0011346999999973 565 49999986532 455677888888887743322
Q ss_pred c----------CCCCCCChHHHHHHHHHHHcC
Q psy2684 335 T----------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 ~----------~~~~~LSGGqkqRvalA~~~l 356 (356)
. .+..+|||||||||+|||+++
T Consensus 465 ~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 1 245799999999999999974
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.92 E-value=1.3e-25 Score=227.69 Aligned_cols=142 Identities=29% Similarity=0.361 Sum_probs=111.8
Q ss_pred EEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 180 LGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 180 l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~--------- 412 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN--------- 412 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC---------
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC---------
Confidence 8999999999542 46999999999999999999999999999999999999999999999998763100
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----CCHHHHHHHHhhcCCCCcc
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQLGMFGLPSYA 333 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----~~~~~~~~~L~~~~l~~~~ 333 (356)
....+.++||++|++. +++ .|+.|++..... .+.+++++.++.+++.+..
T Consensus 413 -----------------------~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (595)
T 2yl4_A 413 -----------------------PVWLRSKIGTVSQEPI--LFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFI 466 (595)
T ss_dssp -----------------------HHHHHHSEEEECSSCC--CCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHH
T ss_pred -----------------------HHHHHhceEEEccCCc--ccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHH
Confidence 0001346999999973 565 599999865322 4567788888888764321
Q ss_pred c----------cCCCCCCChHHHHHHHHHHHcC
Q psy2684 334 H----------TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 334 ~----------~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ..+..+|||||||||+|||+++
T Consensus 467 ~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 467 RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp HTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred HhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 1 1134799999999999999974
No 52
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=1.7e-25 Score=226.20 Aligned_cols=144 Identities=28% Similarity=0.360 Sum_probs=111.2
Q ss_pred CcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
.-++++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-------- 409 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-------- 409 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC--------
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC--------
Confidence 35899999999964 357999999999999999999999999999999999999999999999998864110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcccc
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT 335 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~ 335 (356)
....+.++||++|++ .+++. |+.|++.... ....+++.+.++..++.+....
T Consensus 410 ------------------------~~~~r~~i~~v~Q~~--~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
T 4a82_A 410 ------------------------TGSLRNQIGLVQQDN--ILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMN 462 (578)
T ss_dssp ------------------------HHHHHHTEEEECSSC--CCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred ------------------------HHHHhhheEEEeCCC--ccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 001134699999997 36654 9999986432 3455666677766655322211
Q ss_pred ----------CCCCCCChHHHHHHHHHHHcC
Q psy2684 336 ----------IPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 336 ----------~~~~~LSGGqkqRvalA~~~l 356 (356)
.+..+|||||||||+|||+++
T Consensus 463 lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp STTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred CcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 133689999999999999973
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.2e-25 Score=228.00 Aligned_cols=143 Identities=29% Similarity=0.390 Sum_probs=112.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
-++++|+++.|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~---------- 423 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK---------- 423 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC----------
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC----------
Confidence 5899999999965667999999999999999999999999999999999999999999999998874110
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccCC
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIP 337 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~ 337 (356)
....+.++||++|++ .+++ .|+.|++.... ..+.+++++.++.+++.+.....|
T Consensus 424 ----------------------~~~~r~~i~~v~Q~~--~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (598)
T 3qf4_B 424 ----------------------RSSLRSSIGIVLQDT--ILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP 478 (598)
T ss_dssp ----------------------HHHHHHHEEEECTTC--CCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTST
T ss_pred ----------------------HHHHHhceEEEeCCC--cccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhcc
Confidence 001135799999997 3554 59999986432 345566777777776644332211
Q ss_pred ----------CCCCChHHHHHHHHHHHcC
Q psy2684 338 ----------IRDLSGGQKARVALAELTL 356 (356)
Q Consensus 338 ----------~~~LSGGqkqRvalA~~~l 356 (356)
..+|||||||||+|||+++
T Consensus 479 ~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 479 EGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp TGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2689999999999999973
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.91 E-value=1.9e-25 Score=206.55 Aligned_cols=127 Identities=27% Similarity=0.370 Sum_probs=88.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP 257 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~ 257 (356)
++++++|+++.+ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------- 99 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----------------
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----------------
Confidence 468999999854 4699999999999999999999999999999999999999999998752
Q ss_pred CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc---
Q psy2684 258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH--- 334 (356)
Q Consensus 258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~--- 334 (356)
+++|++|++. +++. |+.+++. ..........+.+..+++.....
T Consensus 100 -----------------------------~i~~v~Q~~~--l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~ 146 (290)
T 2bbs_A 100 -----------------------------RISFCSQNSW--IMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFA 146 (290)
T ss_dssp -----------------------------CEEEECSSCC--CCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTST
T ss_pred -----------------------------EEEEEeCCCc--cCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhcc
Confidence 3899999873 5654 9999987 32223333444555555532111
Q ss_pred -------cCCCCCCChHHHHHHHHHHHcC
Q psy2684 335 -------TIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 335 -------~~~~~~LSGGqkqRvalA~~~l 356 (356)
..++.+|||||||||+|||+++
T Consensus 147 ~~~~~~~~~~~~~LSgGq~QRv~lAraL~ 175 (290)
T 2bbs_A 147 EKDNIVLGEGGITLSGGQRARISLARAVY 175 (290)
T ss_dssp TGGGCBC----CCCCHHHHHHHHHHHHHH
T ss_pred ccccchhcCccCcCCHHHHHHHHHHHHHH
Confidence 1235799999999999999973
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=5.9e-25 Score=222.43 Aligned_cols=143 Identities=27% Similarity=0.347 Sum_probs=110.0
Q ss_pred CcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 178 ~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
..++++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~-------- 411 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK-------- 411 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC--------
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC--------
Confidence 35899999999963 457999999999999999999999999999999999999999999999998864110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCC------
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL------ 329 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l------ 329 (356)
....+.+++|++|++. +++ .|+.|++.... ....+++.+.++..++
T Consensus 412 ------------------------~~~~r~~i~~v~Q~~~--lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 464 (587)
T 3qf4_A 412 ------------------------LKDLRGHISAVPQETV--LFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS 464 (587)
T ss_dssp ------------------------HHHHHHHEEEECSSCC--CCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred ------------------------HHHHHhheEEECCCCc--CcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 0011357999999973 564 49999985432 2445555555544443
Q ss_pred -----CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 330 -----PSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 330 -----~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
.....+ +..+||||||||++|||+++
T Consensus 465 l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 465 LPEGYDSRVER-GGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp SSSGGGCEECS-SSCSSCHHHHHHHHHHHHHH
T ss_pred cccchhhHhcC-CCCCcCHHHHHHHHHHHHHH
Confidence 333333 55899999999999999973
No 56
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.90 E-value=8.8e-24 Score=193.88 Aligned_cols=91 Identities=29% Similarity=0.442 Sum_probs=82.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||+|++
T Consensus 137 ~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~ 216 (275)
T 3gfo_A 137 KDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV 216 (275)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 47889999999999999999999999999999999999999998887777643 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.++.
T Consensus 217 l~~G~i~~-~g~~~~~ 231 (275)
T 3gfo_A 217 MKEGRVIL-QGNPKEV 231 (275)
T ss_dssp EETTEEEE-EECHHHH
T ss_pred EECCEEEE-ECCHHHH
Confidence 99999986 4666544
No 57
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=1e-23 Score=199.54 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=81.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++
T Consensus 157 ~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 157 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp TTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 4789999999999999999999999999999999999999998888777765 378999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+++. .|+.++
T Consensus 237 l~~G~iv~-~g~~~e 250 (366)
T 3tui_C 237 ISNGELIE-QDTVSE 250 (366)
T ss_dssp EETTEEEE-CCBHHH
T ss_pred EECCEEEE-EcCHHH
Confidence 99999986 465544
No 58
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=1.4e-23 Score=189.10 Aligned_cols=91 Identities=32% Similarity=0.430 Sum_probs=82.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||++++
T Consensus 120 ~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~ 199 (240)
T 2onk_A 120 LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199 (240)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46889999999999999999999999999999999999999999888877654 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+..
T Consensus 200 l~~G~i~~-~g~~~~~ 214 (240)
T 2onk_A 200 MLNGRIVE-KGKLKEL 214 (240)
T ss_dssp EETTEEEE-EECHHHH
T ss_pred EECCEEEE-ECCHHHH
Confidence 99999985 4665543
No 59
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.90 E-value=1.8e-23 Score=190.65 Aligned_cols=91 Identities=29% Similarity=0.426 Sum_probs=82.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||+|++|
T Consensus 153 ~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 47889999999999999999999999999999999999999999888887654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++.. |+.+.+
T Consensus 233 ~~G~i~~~-g~~~~~ 246 (263)
T 2olj_A 233 DGGYIIEE-GKPEDL 246 (263)
T ss_dssp ETTEEEEE-ECHHHH
T ss_pred ECCEEEEE-CCHHHH
Confidence 99999854 665543
No 60
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.90 E-value=1.6e-23 Score=188.24 Aligned_cols=83 Identities=31% Similarity=0.389 Sum_probs=76.3
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||++.+ .+||+|++|
T Consensus 140 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l 218 (235)
T 3tif_A 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYL 218 (235)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 7889999999999999999999999999999999999999998888777654 78999999999965 789999999
Q ss_pred eCCeEeEe
Q psy2684 79 DMKKLFYY 86 (356)
Q Consensus 79 ~~g~~~~~ 86 (356)
++|+++..
T Consensus 219 ~~G~i~~~ 226 (235)
T 3tif_A 219 KDGEVERE 226 (235)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 99999763
No 61
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=1.9e-23 Score=190.61 Aligned_cols=91 Identities=37% Similarity=0.496 Sum_probs=82.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|+||||||||++||+.++..+.++++++ +.|||+||||++++..+||+|++|
T Consensus 147 ~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 147 QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226 (262)
T ss_dssp HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46889999999999999999999999999999999999999999888877654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++.. |+.+++
T Consensus 227 ~~G~i~~~-g~~~~~ 240 (262)
T 1b0u_A 227 HQGKIEEE-GDPEQV 240 (262)
T ss_dssp ETTEEEEE-ECHHHH
T ss_pred ECCEEEEe-CCHHHH
Confidence 99999864 665544
No 62
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=2.3e-23 Score=185.81 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=77.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||.+++ .+||+|++|
T Consensus 134 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l 212 (224)
T 2pcj_A 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEM 212 (224)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEE
T ss_pred hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 46889999999999999999999999999999999999999999888877654 67999999999998 789999999
Q ss_pred eCCeEeEe
Q psy2684 79 DMKKLFYY 86 (356)
Q Consensus 79 ~~g~~~~~ 86 (356)
++|+++..
T Consensus 213 ~~G~i~~~ 220 (224)
T 2pcj_A 213 KDGKVVGE 220 (224)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 99999753
No 63
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=3.1e-23 Score=186.97 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=81.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||+|++|
T Consensus 133 ~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp TTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 47889999999999999999999999999999999999999999988887764 579999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+.+
T Consensus 213 ~~G~i~~-~g~~~~~ 226 (240)
T 1ji0_A 213 ETGQIVL-EGKASEL 226 (240)
T ss_dssp ETTEEEE-EEEHHHH
T ss_pred ECCEEEE-EcCHHHH
Confidence 9999975 4655443
No 64
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.89 E-value=1.6e-23 Score=190.66 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=81.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||+|++|
T Consensus 147 ~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 147 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred hCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 46889999999999999999999999999999999999999999888887764 689999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++.. |+.+.
T Consensus 227 ~~G~i~~~-g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAE-GRGEE 239 (257)
T ss_dssp ETTEEEEE-EESHH
T ss_pred ECCEEEEE-eCHHH
Confidence 99999864 54443
No 65
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.89 E-value=3e-23 Score=196.27 Aligned_cols=89 Identities=29% Similarity=0.361 Sum_probs=79.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN----YLQTWKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~----~l~~~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+ ++++.+.|||+||||++++..+||||++
T Consensus 132 ~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v 211 (359)
T 3fvq_A 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV 211 (359)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE
Confidence 578999999999999999999999999999999999999998776654 3445688999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|+++.. |+.+
T Consensus 212 l~~G~i~~~-g~~~ 224 (359)
T 3fvq_A 212 MKQGRILQT-ASPH 224 (359)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EECCEEEEE-eCHH
Confidence 999999865 5543
No 66
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=2.7e-23 Score=188.66 Aligned_cols=89 Identities=28% Similarity=0.361 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++ +.|||+||||++++..+||++++
T Consensus 122 ~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~ 201 (253)
T 2nq2_C 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLL 201 (253)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 46789999999999999999999999999999999999999999988888765 67999999999999999999999
Q ss_pred EeCCeEeEecCCHHH
Q psy2684 78 LDMKKLFYYKGNFTL 92 (356)
Q Consensus 78 l~~g~~~~~~g~~~~ 92 (356)
|++|+ + +.|+.+.
T Consensus 202 l~~G~-~-~~g~~~~ 214 (253)
T 2nq2_C 202 LNKQN-F-KFGETRN 214 (253)
T ss_dssp EETTE-E-EEEEHHH
T ss_pred EeCCe-E-ecCCHHH
Confidence 99999 5 4566544
No 67
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.89 E-value=2.9e-23 Score=197.66 Aligned_cols=87 Identities=30% Similarity=0.469 Sum_probs=79.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|+||||||||++||+..+..+.+.|++ .+.|||+||||++++..+||||++
T Consensus 127 ~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v 206 (381)
T 3rlf_A 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206 (381)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998877666654 478999999999999999999999
Q ss_pred EeCCeEeEecC
Q psy2684 78 LDMKKLFYYKG 88 (356)
Q Consensus 78 l~~g~~~~~~g 88 (356)
|++|+++..+.
T Consensus 207 l~~G~i~~~g~ 217 (381)
T 3rlf_A 207 LDAGRVAQVGK 217 (381)
T ss_dssp EETTEEEEEEC
T ss_pred EECCEEEEEeC
Confidence 99999987543
No 68
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=2.4e-23 Score=190.29 Aligned_cols=90 Identities=31% Similarity=0.352 Sum_probs=81.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhh
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFL------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNI 71 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~------~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~ 71 (356)
.++++.+||||||||++||+||+. +|++|||||||++||+.++..+.++++++ +.|||+||||++++..+
T Consensus 135 ~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~ 214 (266)
T 4g1u_C 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALY 214 (266)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHh
Confidence 478899999999999999999999 99999999999999999998888877654 35999999999999999
Q ss_pred cCEEEEEeCCeEeEecCCHHH
Q psy2684 72 CTDIIHLDMKKLFYYKGNFTL 92 (356)
Q Consensus 72 ~~~i~~l~~g~~~~~~g~~~~ 92 (356)
||+|++|++|+++.. |+.++
T Consensus 215 ~d~v~vl~~G~i~~~-g~~~~ 234 (266)
T 4g1u_C 215 ADRIMLLAQGKLVAC-GTPEE 234 (266)
T ss_dssp CSEEEEEETTEEEEE-ECHHH
T ss_pred CCEEEEEECCEEEEE-cCHHH
Confidence 999999999999864 55543
No 69
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=4.9e-23 Score=194.85 Aligned_cols=89 Identities=29% Similarity=0.403 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|++ .+.|||+||||.+++..+||+|++
T Consensus 139 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 218 (355)
T 1z47_A 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV 218 (355)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887776654 478999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|++... |+.+
T Consensus 219 l~~G~i~~~-g~~~ 231 (355)
T 1z47_A 219 LHEGNVEQF-GTPE 231 (355)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EECCEEEEE-cCHH
Confidence 999999864 5544
No 70
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=6.5e-23 Score=194.44 Aligned_cols=89 Identities=33% Similarity=0.484 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++ .+.|||+||||.+++..+||+|++
T Consensus 127 ~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v 206 (359)
T 2yyz_A 127 LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV 206 (359)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887776654 378999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|++... |+.+
T Consensus 207 l~~G~i~~~-g~~~ 219 (359)
T 2yyz_A 207 FNQGKLVQY-GTPD 219 (359)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EECCEEEEe-CCHH
Confidence 999999865 5543
No 71
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=5.1e-23 Score=194.49 Aligned_cols=89 Identities=34% Similarity=0.394 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|++ .+.|||+||||.+++..+||+|++
T Consensus 121 ~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v 200 (348)
T 3d31_A 121 LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV 200 (348)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887777654 478999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|++... |+.+
T Consensus 201 l~~G~i~~~-g~~~ 213 (348)
T 3d31_A 201 VMDGKLIQV-GKPE 213 (348)
T ss_dssp ESSSCEEEE-ECHH
T ss_pred EECCEEEEE-CCHH
Confidence 999999865 5543
No 72
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=6.4e-23 Score=186.38 Aligned_cols=91 Identities=26% Similarity=0.376 Sum_probs=82.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|
T Consensus 140 ~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l 219 (256)
T 1vpl_A 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219 (256)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence 46789999999999999999999999999999999999999999888887654 679999999999999999999999
Q ss_pred eCCeEeEecCCHHHH
Q psy2684 79 DMKKLFYYKGNFTLF 93 (356)
Q Consensus 79 ~~g~~~~~~g~~~~~ 93 (356)
++|+++. .|+.+..
T Consensus 220 ~~G~i~~-~g~~~~~ 233 (256)
T 1vpl_A 220 HNGTIVE-TGTVEEL 233 (256)
T ss_dssp ETTEEEE-EEEHHHH
T ss_pred ECCEEEE-ecCHHHH
Confidence 9999975 4665543
No 73
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=6.7e-23 Score=186.92 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=81.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcC-EEEEEeC
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICT-DIIHLDM 80 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~-~i~~l~~ 80 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++..|||+||||++++..+|| ++++|++
T Consensus 122 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~ 201 (263)
T 2pjz_A 122 LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVG 201 (263)
T ss_dssp GGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEET
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEEC
Confidence 468899999999999999999999999999999999999999999999999886699999999999999999 9999999
Q ss_pred CeEeEecCCH
Q psy2684 81 KKLFYYKGNF 90 (356)
Q Consensus 81 g~~~~~~g~~ 90 (356)
|+++.. |+.
T Consensus 202 G~i~~~-g~~ 210 (263)
T 2pjz_A 202 NRLQGP-ISV 210 (263)
T ss_dssp TEEEEE-EEH
T ss_pred CEEEEe-cCH
Confidence 999753 543
No 74
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.88 E-value=5.7e-23 Score=195.04 Aligned_cols=89 Identities=30% Similarity=0.377 Sum_probs=80.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++ .+.|||+||||.+++..+||+|++
T Consensus 127 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 206 (362)
T 2it1_A 127 LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV 206 (362)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887776654 378999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|+++.. |+.+
T Consensus 207 l~~G~i~~~-g~~~ 219 (362)
T 2it1_A 207 IREGEILQV-GTPD 219 (362)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EECCEEEEE-cCHH
Confidence 999999865 5443
No 75
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=5.3e-23 Score=195.00 Aligned_cols=89 Identities=37% Similarity=0.410 Sum_probs=80.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++ .+.|||+||||.+++..+||+|++
T Consensus 134 ~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v 213 (353)
T 1oxx_K 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV 213 (353)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4788999999999999999999999999999999999999998887776654 478999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|+++.. |+.+
T Consensus 214 l~~G~i~~~-g~~~ 226 (353)
T 1oxx_K 214 LVKGKLVQV-GKPE 226 (353)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EECCEEEEE-cCHH
Confidence 999999865 5543
No 76
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=8.4e-23 Score=194.81 Aligned_cols=89 Identities=29% Similarity=0.411 Sum_probs=80.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++ .+.|||+||||.+++..+||+|++
T Consensus 133 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887766654 478999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|+++.. |+.+
T Consensus 213 l~~G~i~~~-g~~~ 225 (372)
T 1g29_1 213 MNRGVLQQV-GSPD 225 (372)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EeCCEEEEe-CCHH
Confidence 999999865 5543
No 77
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.88 E-value=8.4e-23 Score=186.85 Aligned_cols=90 Identities=29% Similarity=0.446 Sum_probs=81.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
.++++.+||||||||++||++|+.+|++|||||||++||+.++..+.++++++ +.|||+||||++++..+||++++|
T Consensus 132 ~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 132 KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 211 (266)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred ccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46889999999999999999999999999999999999999999888887754 679999999999999999999999
Q ss_pred eCCeEeEecCCHHH
Q psy2684 79 DMKKLFYYKGNFTL 92 (356)
Q Consensus 79 ~~g~~~~~~g~~~~ 92 (356)
++|+++. .|+.+.
T Consensus 212 ~~G~i~~-~g~~~~ 224 (266)
T 2yz2_A 212 EKGKKVF-DGTRME 224 (266)
T ss_dssp ETTEEEE-EEEHHH
T ss_pred ECCEEEE-eCCHHH
Confidence 9999975 455543
No 78
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.88 E-value=5.7e-23 Score=189.01 Aligned_cols=90 Identities=29% Similarity=0.311 Sum_probs=81.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEE--EEEecChhHHhhhcCEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTL--LVVSHDQSFLNNICTDII 76 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~l~~~~~~i~ 76 (356)
.++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++ +.|| |+||||++++..+||+|+
T Consensus 155 ~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE
Confidence 46889999999999999999999999999999999999999999988888765 6799 999999999999999999
Q ss_pred EEeCCeEeEecCCHHH
Q psy2684 77 HLDMKKLFYYKGNFTL 92 (356)
Q Consensus 77 ~l~~g~~~~~~g~~~~ 92 (356)
+|++|+++. .|+.+.
T Consensus 235 ~l~~G~i~~-~g~~~~ 249 (279)
T 2ihy_A 235 LLKDGQSIQ-QGAVED 249 (279)
T ss_dssp EEETTEEEE-EEEHHH
T ss_pred EEECCEEEE-ECCHHH
Confidence 999999985 465544
No 79
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=8.7e-23 Score=194.42 Aligned_cols=89 Identities=31% Similarity=0.459 Sum_probs=80.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++ .+.|||+||||.+++..+||+|++
T Consensus 135 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 214 (372)
T 1v43_A 135 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 214 (372)
T ss_dssp TTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887776654 378999999999999999999999
Q ss_pred EeCCeEeEecCCHH
Q psy2684 78 LDMKKLFYYKGNFT 91 (356)
Q Consensus 78 l~~g~~~~~~g~~~ 91 (356)
|++|++... |+.+
T Consensus 215 l~~G~i~~~-g~~~ 227 (372)
T 1v43_A 215 MNRGQLLQI-GSPT 227 (372)
T ss_dssp EETTEEEEE-ECHH
T ss_pred EECCEEEEe-CCHH
Confidence 999999865 5543
No 80
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1.6e-22 Score=185.03 Aligned_cols=89 Identities=29% Similarity=0.461 Sum_probs=80.0
Q ss_pred CCCCCC-cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh-cCEEE
Q psy2684 2 QEKSTK-EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI-CTDII 76 (356)
Q Consensus 2 ~~~~~~-~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~-~~~i~ 76 (356)
.++++. +||||||||++||+||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||+|+
T Consensus 157 ~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 157 LTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp TTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEE
T ss_pred hcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEE
Confidence 356776 59999999999999999999999999999999999999999999876 47999999999999886 99999
Q ss_pred EEeCCeEeEecCCHH
Q psy2684 77 HLDMKKLFYYKGNFT 91 (356)
Q Consensus 77 ~l~~g~~~~~~g~~~ 91 (356)
+|++|+++.. |+.+
T Consensus 237 ~l~~G~i~~~-g~~~ 250 (267)
T 2zu0_C 237 VLYQGRIVKS-GDFT 250 (267)
T ss_dssp EEETTEEEEE-ECTT
T ss_pred EEECCEEEEE-cCHH
Confidence 9999999864 5543
No 81
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=7.5e-23 Score=185.54 Aligned_cols=89 Identities=28% Similarity=0.350 Sum_probs=76.6
Q ss_pred CCCCCCc-CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh-cCEEE
Q psy2684 2 QEKSTKE-FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI-CTDII 76 (356)
Q Consensus 2 ~~~~~~~-LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~-~~~i~ 76 (356)
.++++.+ ||||||||++||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||.+++..+ ||+|+
T Consensus 136 ~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~ 215 (250)
T 2d2e_A 136 LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH 215 (250)
T ss_dssp GGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE
T ss_pred hcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE
Confidence 3678888 9999999999999999999999999999999999999999988875 57999999999999888 59999
Q ss_pred EEeCCeEeEecCCHH
Q psy2684 77 HLDMKKLFYYKGNFT 91 (356)
Q Consensus 77 ~l~~g~~~~~~g~~~ 91 (356)
+|++|+++.. |+.+
T Consensus 216 ~l~~G~i~~~-g~~~ 229 (250)
T 2d2e_A 216 VMMDGRVVAT-GGPE 229 (250)
T ss_dssp EEETTEEEEE-ESHH
T ss_pred EEECCEEEEE-eCHH
Confidence 9999999864 5554
No 82
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=1.2e-22 Score=183.77 Aligned_cols=90 Identities=31% Similarity=0.342 Sum_probs=81.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPT-------LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI 71 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~-------~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~ 71 (356)
.++++.+||||||||++||++|+.+|+ +|||||||++||+.++..+.++|+++ +.|||+||||++++..+
T Consensus 120 ~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~ 199 (249)
T 2qi9_C 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH 199 (249)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 467899999999999999999999999 99999999999999999988888765 67999999999999999
Q ss_pred cCEEEEEeCCeEeEecCCHHH
Q psy2684 72 CTDIIHLDMKKLFYYKGNFTL 92 (356)
Q Consensus 72 ~~~i~~l~~g~~~~~~g~~~~ 92 (356)
||++++|++|+++. .|+.+.
T Consensus 200 ~d~v~~l~~G~i~~-~g~~~~ 219 (249)
T 2qi9_C 200 AHRAWLLKGGKMLA-SGRREE 219 (249)
T ss_dssp CSEEEEEETTEEEE-EEEHHH
T ss_pred CCEEEEEECCEEEE-eCCHHH
Confidence 99999999999975 455543
No 83
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.88 E-value=2.6e-22 Score=183.95 Aligned_cols=90 Identities=28% Similarity=0.436 Sum_probs=81.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+||||||||++||+||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++
T Consensus 150 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~ 228 (271)
T 2ixe_A 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILF 228 (271)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEE
T ss_pred hcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEE
Confidence 35778999999999999999999999999999999999999999999999876 4699999999999875 999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+.+
T Consensus 229 l~~G~i~~-~g~~~~l 243 (271)
T 2ixe_A 229 LKEGSVCE-QGTHLQL 243 (271)
T ss_dssp EETTEEEE-EECHHHH
T ss_pred EECCEEEE-ECCHHHH
Confidence 99999985 4666544
No 84
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=2.7e-22 Score=181.44 Aligned_cols=89 Identities=27% Similarity=0.457 Sum_probs=79.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++|++
T Consensus 140 ~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~ 218 (247)
T 2ff7_A 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEK 218 (247)
T ss_dssp STTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEET
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEEC
Confidence 4567899999999999999999999999999999999999999988888765 6799999999999865 999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|+.++.
T Consensus 219 G~i~~-~g~~~~l 230 (247)
T 2ff7_A 219 GKIVE-QGKHKEL 230 (247)
T ss_dssp TEEEE-EECHHHH
T ss_pred CEEEE-ECCHHHH
Confidence 99986 4665443
No 85
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=4e-23 Score=225.69 Aligned_cols=142 Identities=27% Similarity=0.331 Sum_probs=112.5
Q ss_pred cEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
-++++|++|.|++ +.++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|+++..-.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~-------- 486 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN-------- 486 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC--------
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc--------
Confidence 4899999999964 457999999999999999999999999999999999999999999999998874110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCc---
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSY--- 332 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~--- 332 (356)
....+.+|||++|++. +| +.|+.||+.... ..+++++.+.++..++.++
T Consensus 487 ------------------------~~~lr~~i~~v~Q~~~--Lf-~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~ 539 (1321)
T 4f4c_A 487 ------------------------LEFLRKNVAVVSQEPA--LF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKT 539 (1321)
T ss_dssp ------------------------HHHHHHHEEEECSSCC--CC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------HHHHhhcccccCCcce--ee-CCchhHHHhhhcccchHHHHHHHHHHccchhHHHc
Confidence 0011357999999983 44 669999986543 4567778877776664322
Q ss_pred --------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684 333 --------AHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 333 --------~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
... .-..||||||||++|||+++
T Consensus 540 lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 540 LPNGYNTLVGD-RGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp STTTTSSEESS-SSCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCccEecC-CCCCCCHHHHHHHHHHHHHc
Confidence 111 23589999999999999974
No 86
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=6.2e-23 Score=223.68 Aligned_cols=142 Identities=26% Similarity=0.339 Sum_probs=109.3
Q ss_pred cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684 179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256 (356)
Q Consensus 179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG 256 (356)
-++++|++|.|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++....
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-------- 458 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-------- 458 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC--------
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC--------
Confidence 58999999999642 46999999999999999999999999999999999999999999999998874110
Q ss_pred CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCC-----
Q psy2684 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLP----- 330 (356)
Q Consensus 257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~----- 330 (356)
....+.+|||++|++ .+++. |+.|++.... ....+++++.++..++.
T Consensus 459 ------------------------~~~~r~~i~~v~Q~~--~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~ 511 (1284)
T 3g5u_A 459 ------------------------VRYLREIIGVVSQEP--VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511 (1284)
T ss_dssp ------------------------HHHHHHHEEEECSSC--CCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------HHHHHhheEEEcCCC--ccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 001134699999997 36654 9999986543 34555665555444332
Q ss_pred ------CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 331 ------SYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 331 ------~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
..... ...+|||||||||+|||+++
T Consensus 512 l~~g~~t~~~~-~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 512 LPHQFDTLVGE-RGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp STTGGGCCCSS-SSCSSCHHHHHHHHHHHHHH
T ss_pred ccccccccccC-CCCccCHHHHHHHHHHHHHh
Confidence 22222 34689999999999999973
No 87
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=6.1e-22 Score=184.05 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=80.2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+.. ||+|++|++
T Consensus 185 ~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKD 263 (306)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEET
T ss_pred cCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEEC
Confidence 3556799999999999999999999999999999999999998888888764 6799999999999987 999999999
Q ss_pred CeEeEecCCHHHHH
Q psy2684 81 KKLFYYKGNFTLFK 94 (356)
Q Consensus 81 g~~~~~~g~~~~~~ 94 (356)
|+++.. |++++..
T Consensus 264 G~iv~~-G~~~el~ 276 (306)
T 3nh6_A 264 GCIVER-GRHEALL 276 (306)
T ss_dssp TEEEEE-ECHHHHH
T ss_pred CEEEEE-CCHHHHH
Confidence 999864 7766543
No 88
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.87 E-value=8.9e-22 Score=179.41 Aligned_cols=89 Identities=27% Similarity=0.477 Sum_probs=79.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++.+.+||||||||++||+||+.+|+||||||||++||+.++..+.++++++ +.|||+||||.+++. .||+|++|++
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~ 228 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNK 228 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEET
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEEC
Confidence 3567899999999999999999999999999999999999999988888765 579999999999986 4999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|+.+..
T Consensus 229 G~i~~-~g~~~~l 240 (260)
T 2ghi_A 229 GKIVE-KGTHKDL 240 (260)
T ss_dssp TEEEE-EECHHHH
T ss_pred CEEEE-ECCHHHH
Confidence 99985 4666554
No 89
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=3.5e-22 Score=180.41 Aligned_cols=89 Identities=27% Similarity=0.406 Sum_probs=78.2
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.++++ +.|||+||||.+++. .||+|++|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEET
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEEC
Confidence 3567899999999999999999999999999999999999988877777654 689999999999886 5999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|+.+.+
T Consensus 213 G~i~~-~g~~~~~ 224 (243)
T 1mv5_A 213 GQITG-SGKHNEL 224 (243)
T ss_dssp TEECC-CSCHHHH
T ss_pred CEEEE-eCCHHHH
Confidence 99975 5766544
No 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.86 E-value=1.3e-21 Score=175.07 Aligned_cols=88 Identities=28% Similarity=0.411 Sum_probs=77.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY-LQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
+++.+||||||||++||+||+.+|++|||||||++||+.++..+.+. ++++ +.|||+||||.+++. .||++++|++
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 204 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 204 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEET
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEEC
Confidence 45689999999999999999999999999999999999999999886 4443 579999999999986 4999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|+++..
T Consensus 205 G~i~~-~g~~~~~ 216 (229)
T 2pze_A 205 GSSYF-YGTFSEL 216 (229)
T ss_dssp TEEEE-EECHHHH
T ss_pred CEEEE-ECCHHHH
Confidence 99985 4665543
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=176.56 Aligned_cols=89 Identities=27% Similarity=0.378 Sum_probs=78.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---h--cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ---T--WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~---~--~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.+. + .+.|||+||||.+++. .||+|++
T Consensus 122 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~ 200 (237)
T 2cbz_A 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIV 200 (237)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEE
Confidence 57789999999999999999999999999999999999999999988883 2 2579999999999985 6999999
Q ss_pred EeCCeEeEecCCHHHH
Q psy2684 78 LDMKKLFYYKGNFTLF 93 (356)
Q Consensus 78 l~~g~~~~~~g~~~~~ 93 (356)
|++|+++. .|+.+..
T Consensus 201 l~~G~i~~-~g~~~~~ 215 (237)
T 2cbz_A 201 MSGGKISE-MGSYQEL 215 (237)
T ss_dssp EETTEEEE-EECHHHH
T ss_pred EeCCEEEE-eCCHHHH
Confidence 99999985 4666544
No 92
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.84 E-value=1.1e-20 Score=157.21 Aligned_cols=80 Identities=33% Similarity=0.411 Sum_probs=70.9
Q ss_pred CCCCCcCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcC
Q psy2684 3 EKSTKEFSGGWRIRVSLA------RALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICT 73 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la------~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~ 73 (356)
++++.+||||||||++|| ++|+.+|++|||||||++||+.++.++.+.+.++ +.|||+||||.+ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 578899999999999876 8999999999999999999999999999998876 469999999995 567899
Q ss_pred EEEEEe--CCeE
Q psy2684 74 DIIHLD--MKKL 83 (356)
Q Consensus 74 ~i~~l~--~g~~ 83 (356)
++++|+ +|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 999994 5543
No 93
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.7e-21 Score=192.90 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=79.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++
T Consensus 461 ~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540 (608)
T ss_dssp SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998877776654 478999999999999999999999
Q ss_pred EeC--CeEeEecCCHH
Q psy2684 78 LDM--KKLFYYKGNFT 91 (356)
Q Consensus 78 l~~--g~~~~~~g~~~ 91 (356)
|++ |++... |+.+
T Consensus 541 l~~~~g~~~~~-g~p~ 555 (608)
T 3j16_B 541 FEGIPSKNAHA-RAPE 555 (608)
T ss_dssp CEEETTTEEEC-CCCE
T ss_pred EeCCCCeEEec-CChH
Confidence 996 777654 5443
No 94
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=5.7e-21 Score=190.70 Aligned_cols=79 Identities=25% Similarity=0.385 Sum_probs=73.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++
T Consensus 379 ~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v 458 (538)
T 3ozx_A 379 LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999998887777764 478999999999999999999999
Q ss_pred EeC
Q psy2684 78 LDM 80 (356)
Q Consensus 78 l~~ 80 (356)
|++
T Consensus 459 l~~ 461 (538)
T 3ozx_A 459 FKG 461 (538)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 95
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.83 E-value=1.6e-20 Score=173.48 Aligned_cols=88 Identities=28% Similarity=0.399 Sum_probs=75.5
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-Hhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL-QTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
+.+.+||||||||++||++|+.+|++|||||||++||+.++..+.+.+ +++ +.|||+||||.+++. .||++++|++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 346899999999999999999999999999999999999999998863 333 579999999999986 5999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|+.+..
T Consensus 234 G~i~~-~g~~~~l 245 (290)
T 2bbs_A 234 GSSYF-YGTFSEL 245 (290)
T ss_dssp TEEEE-EECHHHH
T ss_pred CeEEE-eCCHHHH
Confidence 99975 4666554
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.83 E-value=2.9e-21 Score=202.25 Aligned_cols=88 Identities=24% Similarity=0.468 Sum_probs=80.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
++++.+||||||||++||++|+.+|+|||||||||+||+.++.++.+.|+++++|||+||||++++..+||+|++|++|+
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~ 975 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR 975 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTB
T ss_pred CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecCCH
Q psy2684 83 LFYYKGNF 90 (356)
Q Consensus 83 ~~~~~g~~ 90 (356)
++..+.+|
T Consensus 976 Iv~~G~~~ 983 (986)
T 2iw3_A 976 MTPSGHNW 983 (986)
T ss_dssp CCC-----
T ss_pred EEEeCCcc
Confidence 98655444
No 97
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.83 E-value=1.1e-20 Score=188.91 Aligned_cols=89 Identities=26% Similarity=0.356 Sum_probs=78.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|++ .++|||+||||++++..+||||++
T Consensus 395 ~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~v 474 (538)
T 1yqt_A 395 YDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV 474 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4688999999999999999999999999999999999999999888887765 378999999999999999999999
Q ss_pred EeC--CeEeEecCCHH
Q psy2684 78 LDM--KKLFYYKGNFT 91 (356)
Q Consensus 78 l~~--g~~~~~~g~~~ 91 (356)
|++ |.+.. .|+.+
T Consensus 475 l~~~~~~~~~-~g~~~ 489 (538)
T 1yqt_A 475 FEGEPGKYGR-ALPPM 489 (538)
T ss_dssp EEEETTTEEE-ECCCE
T ss_pred EeCCcceEee-cCCHH
Confidence 985 56554 35543
No 98
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=182.23 Aligned_cols=81 Identities=23% Similarity=0.376 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCeEeEe
Q psy2684 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 86 (356)
Q Consensus 9 LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~~~ 86 (356)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|++. +.|||+||||.+.+. .||||++|++|+++.+
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQY 234 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999888875 579999999987665 5999999999999876
Q ss_pred cCCHH
Q psy2684 87 KGNFT 91 (356)
Q Consensus 87 ~g~~~ 91 (356)
|+.+
T Consensus 235 -g~~~ 238 (390)
T 3gd7_A 235 -DSIL 238 (390)
T ss_dssp -SSHH
T ss_pred -CCHH
Confidence 5443
No 99
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.82 E-value=2.1e-20 Score=188.96 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=78.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++
T Consensus 465 ~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~v 544 (607)
T 3bk7_A 465 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 544 (607)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 57889999999999999999999999999999999999999998888877754 78999999999999999999999
Q ss_pred EeC--CeEeEecCCHH
Q psy2684 78 LDM--KKLFYYKGNFT 91 (356)
Q Consensus 78 l~~--g~~~~~~g~~~ 91 (356)
|++ |.+.. .|+.+
T Consensus 545 l~~~~g~~~~-~g~p~ 559 (607)
T 3bk7_A 545 FEGEPGRHGR-ALPPM 559 (607)
T ss_dssp EEEETTTEEE-ECCCE
T ss_pred EcCCcceEEe-cCCHH
Confidence 985 55554 35543
No 100
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=7.7e-20 Score=184.94 Aligned_cols=91 Identities=25% Similarity=0.384 Sum_probs=81.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|+|+||||++.+. .||+|++|++
T Consensus 474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~ 552 (587)
T 3qf4_A 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHE 552 (587)
T ss_dssp CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEET
T ss_pred cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEEC
Confidence 4567899999999999999999999999999999999999999888888764 579999999999986 7999999999
Q ss_pred CeEeEecCCHHHHHH
Q psy2684 81 KKLFYYKGNFTLFKK 95 (356)
Q Consensus 81 g~~~~~~g~~~~~~~ 95 (356)
|+++.. |++++..+
T Consensus 553 G~i~~~-g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGF-GTHKELLE 566 (587)
T ss_dssp TEEEEE-ECHHHHHH
T ss_pred CEEEEE-CCHHHHHh
Confidence 999874 77766543
No 101
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.81 E-value=3.6e-21 Score=170.17 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=69.5
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
++++.+||||||||++||++|+.+|++|||||||++||+.++..+.++++++ +.|||+||||.+++..+||+|+.+
T Consensus 128 ~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 5788999999999999999999999999999999999999998888887765 579999999999999999988644
No 102
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.80 E-value=6.7e-20 Score=175.02 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=74.7
Q ss_pred CCCCCcCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALF------LEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICT 73 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~------~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~ 73 (356)
++++.+|||||+||++||++|+ .+|++|||||||++||+.++.++.++++++ +.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 4688999999999999999999 799999999999999999999999988875 57999999999984 6799
Q ss_pred EEEEEeCCeEe
Q psy2684 74 DIIHLDMKKLF 84 (356)
Q Consensus 74 ~i~~l~~g~~~ 84 (356)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999986
No 103
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.80 E-value=1.3e-19 Score=183.17 Aligned_cols=88 Identities=31% Similarity=0.476 Sum_probs=79.0
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMK 81 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g 81 (356)
+...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|||+||||.+.+. .||+|++|++|
T Consensus 476 ~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G 554 (582)
T 3b5x_A 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEG 554 (582)
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECC
Confidence 456899999999999999999999999999999999999999888888765 579999999999986 69999999999
Q ss_pred eEeEecCCHHHH
Q psy2684 82 KLFYYKGNFTLF 93 (356)
Q Consensus 82 ~~~~~~g~~~~~ 93 (356)
+++. .|++++.
T Consensus 555 ~i~~-~g~~~~l 565 (582)
T 3b5x_A 555 EIIE-RGRHADL 565 (582)
T ss_pred EEEE-ECCHHHH
Confidence 9986 4776554
No 104
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=1.1e-19 Score=183.64 Aligned_cols=89 Identities=27% Similarity=0.453 Sum_probs=78.5
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMK 81 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g 81 (356)
+...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|+|+||||++.+.. ||+|++|++|
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G 551 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENG 551 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETT
T ss_pred cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 345689999999999999999999999999999999999988888888764 5799999999999865 9999999999
Q ss_pred eEeEecCCHHHHH
Q psy2684 82 KLFYYKGNFTLFK 94 (356)
Q Consensus 82 ~~~~~~g~~~~~~ 94 (356)
+++. .|++++..
T Consensus 552 ~i~~-~g~~~el~ 563 (578)
T 4a82_A 552 HIVE-TGTHRELI 563 (578)
T ss_dssp EEEE-EECHHHHH
T ss_pred EEEE-ECCHHHHH
Confidence 9986 47765543
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=2.5e-20 Score=186.29 Aligned_cols=162 Identities=11% Similarity=0.049 Sum_probs=98.0
Q ss_pred HHHHHHHHHc-cCCCEEEEeCCCCC-----CCHHHHHHHHHHHH---hcCcEEEEEecChhHH---------hhhcCEEE
Q psy2684 15 IRVSLARALF-LEPTLLLLDEPTNH-----LDLNAVIWLDNYLQ---TWKKTLLVVSHDQSFL---------NNICTDII 76 (356)
Q Consensus 15 ~r~~la~~l~-~~p~~llLDEPt~~-----LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~l---------~~~~~~i~ 76 (356)
..-.+...|. .+|++++|||||+. ||+..+..+.++++ +.+.|||+||||.+++ ..+||+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 3445555553 68999999999985 58888777666554 4578999999999984 55699999
Q ss_pred EEeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc-cCCCCchh
Q psy2684 77 HLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQK-DDDDEPKE 155 (356)
Q Consensus 77 ~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (356)
+|++|.+ .|....+.. .. +... ........
T Consensus 206 ~L~~~~~---~G~~~r~l~---------------------------~~-------------------k~r~~~~~~~~~~ 236 (525)
T 1tf7_A 206 ILRNVLE---GERRRRTLE---------------------------IL-------------------KLRGTSHMKGEYP 236 (525)
T ss_dssp EEEEECS---TTCCEEEEE---------------------------EE-------------------EETTSCCCCSEEE
T ss_pred EEEEEcc---CCceeEEEE---------------------------EE-------------------ECCCCCCCCceEE
Confidence 9998432 121100000 00 0000 00000000
Q ss_pred h-hcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCcccccc-ceeeecCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684 156 L-LEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 156 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
. +.. .... .++.......+.+++++++..|++ |+. ++..|.+|++++|+|+||||||||+++++|...|.
T Consensus 237 ~~i~~---~gi~-v~p~~~~~~~~~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 237 FTITD---HGIN-IFPLGAMRLTQRSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp EEEET---TEEE-ECCTTTCCSCCCCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred EEEcC---CCEE-EEeccccccccccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 0 000 0000 011111112345677888876631 333 25599999999999999999999999999998774
No 106
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.80 E-value=1.4e-19 Score=183.13 Aligned_cols=89 Identities=27% Similarity=0.419 Sum_probs=79.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
++...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|+|+||||.+.+. .||+|++|++
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~ 553 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVED 553 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEEC
Confidence 3456899999999999999999999999999999999999998888887764 689999999999986 5999999999
Q ss_pred CeEeEecCCHHHH
Q psy2684 81 KKLFYYKGNFTLF 93 (356)
Q Consensus 81 g~~~~~~g~~~~~ 93 (356)
|+++. .|++++.
T Consensus 554 G~i~~-~g~~~~l 565 (582)
T 3b60_A 554 GIIVE-RGTHSEL 565 (582)
T ss_dssp TEEEE-EECHHHH
T ss_pred CEEEE-ecCHHHH
Confidence 99986 4666554
No 107
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=1.6e-19 Score=183.09 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=77.8
Q ss_pred CcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCeEe
Q psy2684 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLF 84 (356)
Q Consensus 7 ~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~ 84 (356)
.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++. +.|+|+||||++.+.. ||+|++|++|+++
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV 568 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE
Confidence 689999999999999999999999999999999999998888877764 6899999999999976 9999999999998
Q ss_pred EecCCHHHHH
Q psy2684 85 YYKGNFTLFK 94 (356)
Q Consensus 85 ~~~g~~~~~~ 94 (356)
. .|++++..
T Consensus 569 ~-~g~~~~l~ 577 (598)
T 3qf4_B 569 E-MGKHDELI 577 (598)
T ss_dssp E-CSCHHHHH
T ss_pred E-ECCHHHHH
Confidence 6 57776654
No 108
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.79 E-value=2.5e-19 Score=181.62 Aligned_cols=86 Identities=34% Similarity=0.493 Sum_probs=77.1
Q ss_pred CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|||+||||.+.+.. ||+|++|++|+
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 558 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGK 558 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCE
Confidence 45899999999999999999999999999999999999999888888764 6799999999999864 99999999999
Q ss_pred EeEecCCHHH
Q psy2684 83 LFYYKGNFTL 92 (356)
Q Consensus 83 ~~~~~g~~~~ 92 (356)
++.. |++++
T Consensus 559 i~~~-g~~~~ 567 (595)
T 2yl4_A 559 ITEY-GKHEE 567 (595)
T ss_dssp EEEE-ECSCC
T ss_pred EEEE-CCHHH
Confidence 9864 55544
No 109
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.79 E-value=3.8e-19 Score=182.75 Aligned_cols=89 Identities=28% Similarity=0.386 Sum_probs=78.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPT---LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~---~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
++++.+|||||||||+||+||+.+|+ ||||||||++||+.++..+.++++++ +.|||+||||++++. .||||+
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~ 616 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYII 616 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEE
Confidence 67899999999999999999999875 99999999999999988887777654 689999999999885 699999
Q ss_pred EE------eCCeEeEecCCHHHH
Q psy2684 77 HL------DMKKLFYYKGNFTLF 93 (356)
Q Consensus 77 ~l------~~g~~~~~~g~~~~~ 93 (356)
+| ++|+++. .|+.++.
T Consensus 617 ~l~~~~g~~~G~i~~-~g~~~~~ 638 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVA-VGTPEEV 638 (670)
T ss_dssp EEESSSGGGCCEEEE-EECHHHH
T ss_pred EecCCcCCCCCEEEE-ecCHHHH
Confidence 99 7899986 4666554
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=6.9e-19 Score=184.06 Aligned_cols=90 Identities=29% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP---TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDI 75 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p---~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i 75 (356)
.++++.+|||||+|||+||++|+.+| +||||||||++||+.++..|.+.|+++ +.|||+||||++++.. ||+|
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrI 877 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHI 877 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEE
T ss_pred ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE
Confidence 35789999999999999999999876 699999999999999999888877654 7899999999999865 9999
Q ss_pred EEE------eCCeEeEecCCHHHH
Q psy2684 76 IHL------DMKKLFYYKGNFTLF 93 (356)
Q Consensus 76 ~~l------~~g~~~~~~g~~~~~ 93 (356)
++| ++|+++. .|+.++.
T Consensus 878 ivLgp~gg~~~G~Iv~-~Gtpeel 900 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVA-TGTPEEI 900 (916)
T ss_dssp EEEESSSGGGCCEEEE-EESHHHH
T ss_pred EEecCCCCCCCCEEEE-EcCHHHH
Confidence 999 7899986 5666554
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.76 E-value=2.3e-18 Score=167.00 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=74.0
Q ss_pred CCCCcC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEE
Q psy2684 4 KSTKEF-SGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 4 ~~~~~L-SgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
+++..+ ||||+||++||++|+.+| ++|||||||++||+.++.+|.++|+++ ++|||+||||++++ ..||++++|
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEE
Confidence 444454 999999999999999999 999999999999999999999999987 48999999999887 579999999
Q ss_pred ----eCCeEeEe
Q psy2684 79 ----DMKKLFYY 86 (356)
Q Consensus 79 ----~~g~~~~~ 86 (356)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 89988653
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=1.6e-18 Score=179.99 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=79.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLE---PTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDI 75 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~---p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i 75 (356)
.++++.+|||||+||++||++|+.+ |+||||||||++||+.++..|.++|++ .+.|||+||||++++ ..||+|
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDri 802 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWV 802 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence 3688999999999999999999996 799999999999999999888777664 478999999999999 689999
Q ss_pred EEE------eCCeEeEecCCHHHHH
Q psy2684 76 IHL------DMKKLFYYKGNFTLFK 94 (356)
Q Consensus 76 ~~l------~~g~~~~~~g~~~~~~ 94 (356)
++| ++|+++. .|+++++.
T Consensus 803 i~L~p~~g~~~G~Iv~-~g~~~el~ 826 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVA-QGTPAEVA 826 (842)
T ss_dssp EEECSSSGGGCCSEEE-EECHHHHT
T ss_pred EEECCCCCCCCCEEEE-EcCHHHHH
Confidence 999 6888875 57766543
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.74 E-value=7.6e-18 Score=143.72 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=78.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEE
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFL----EPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~----~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.+++..||||||||++||++|+. +|+++||||||++||+.++..+.++++++ +.++|+|||+...+ ..||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 46789999999999999999984 46999999999999999999999999875 36899999997665 6799998
Q ss_pred EE--eCCeEeEecCCHHHHHHH
Q psy2684 77 HL--DMKKLFYYKGNFTLFKKM 96 (356)
Q Consensus 77 ~l--~~g~~~~~~g~~~~~~~~ 96 (356)
.+ ++|....+..+++.+.+.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~~ 159 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMKI 159 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHHH
Confidence 65 578777777777766543
No 114
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=5.5e-18 Score=176.98 Aligned_cols=91 Identities=26% Similarity=0.320 Sum_probs=79.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP---TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDI 75 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p---~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i 75 (356)
.++++.+|||||+||++||++|+.+| +||||||||++||+.++..|.++|++ .+.|||+||||++++ ..||+|
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI 935 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWI 935 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence 36789999999999999999999875 99999999999999999888877765 478999999999998 579999
Q ss_pred EEE------eCCeEeEecCCHHHHH
Q psy2684 76 IHL------DMKKLFYYKGNFTLFK 94 (356)
Q Consensus 76 ~~l------~~g~~~~~~g~~~~~~ 94 (356)
++| ++|+++. .|+++.+.
T Consensus 936 ivL~p~gg~~~G~Iv~-~G~~~el~ 959 (993)
T 2ygr_A 936 IDLGPEGGAGGGTVVA-QGTPEDVA 959 (993)
T ss_dssp EEEESSSTTSCSEEEE-EECHHHHH
T ss_pred EEECCCcCCCCCEEEE-ecCHHHHH
Confidence 999 5788874 57766543
No 115
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.74 E-value=5.5e-18 Score=176.45 Aligned_cols=91 Identities=29% Similarity=0.367 Sum_probs=79.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEE
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEP---TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDI 75 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p---~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i 75 (356)
.++++.+|||||+||++||++|+.+| +||||||||++||+.++..|.++|++ .+.|||+||||++++ ..||+|
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI 917 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYI 917 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence 36789999999999999999999875 99999999999999999888877765 478999999999998 479999
Q ss_pred EEE------eCCeEeEecCCHHHHH
Q psy2684 76 IHL------DMKKLFYYKGNFTLFK 94 (356)
Q Consensus 76 ~~l------~~g~~~~~~g~~~~~~ 94 (356)
++| ++|+++. .|+.+.+.
T Consensus 918 ivL~p~gG~~~G~Iv~-~g~~~el~ 941 (972)
T 2r6f_A 918 IDLGPEGGDRGGQIVA-VGTPEEVA 941 (972)
T ss_dssp EEECSSSTTSCCSEEE-EESHHHHH
T ss_pred EEEcCCCCCCCCEEEE-ecCHHHHH
Confidence 999 6788875 56665543
No 116
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1e-20 Score=185.32 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=92.7
Q ss_pred CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC-c-eeEeeeccccCcCCeeee
Q psy2684 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-K-VLLEKVNFGLDMESRVAL 254 (356)
Q Consensus 177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~-i~~~g~~~~~~~~~~ial 254 (356)
.++++++|+++.|+ ++||++.+|++++|+||||||||||+++|+|+++|++| + |+++|.
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------------ 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------------ 176 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------------
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------------
Confidence 46788999998882 79999999999999999999999999999999999999 8 988751
Q ss_pred ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCC-CCCCCCCHHHHHHHh---cC-CCHHHHHHHHhhcCC
Q psy2684 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE-HLFPDDTPCEYLMKL---FN-LPYEKSRRQLGMFGL 329 (356)
Q Consensus 255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~-~l~~~~t~~e~~~~~---~~-~~~~~~~~~L~~~~l 329 (356)
.+..++|++|+... .+....++.+++... .+ .....+..++..+|+
T Consensus 177 -----------------------------~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 177 -----------------------------PQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp -----------------------------TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCS
T ss_pred -----------------------------ccCCeeeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCC
Confidence 02346677776521 122334454443100 01 011234456788888
Q ss_pred CCccccCCCCCCChHHHHHHHHHHH
Q psy2684 330 PSYAHTIPIRDLSGGQKARVALAEL 354 (356)
Q Consensus 330 ~~~~~~~~~~~LSGGqkqRvalA~~ 354 (356)
..... +.+|||||||||+||++
T Consensus 228 ~~~~~---~~~LSgGq~qrlalAra 249 (460)
T 2npi_A 228 ERINE---NKDLYLECISQLGQVVG 249 (460)
T ss_dssp SSGGG---CHHHHHHHHHHHHHHHH
T ss_pred Ccccc---hhhhhHHHHHHHHHHHH
Confidence 76543 58999999999999998
No 117
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.69 E-value=5e-17 Score=153.68 Aligned_cols=76 Identities=33% Similarity=0.471 Sum_probs=67.4
Q ss_pred CCCCCcCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcC
Q psy2684 3 EKSTKEFSGGWRI------RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICT 73 (356)
Q Consensus 3 ~~~~~~LSgGe~~------r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~ 73 (356)
++++.+||||||| |+++|++|+.+|++|||||||++||+..+..|.++|+++ +.|||+||||.+ +...||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 5788999999999 678888888999999999999999999999998888765 359999999966 557899
Q ss_pred EEEEEe
Q psy2684 74 DIIHLD 79 (356)
Q Consensus 74 ~i~~l~ 79 (356)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.68 E-value=1e-16 Score=150.51 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=75.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEE-
Q psy2684 3 EKSTKEFSGGWRIRVSLARALF----LEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDI- 75 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~----~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i- 75 (356)
++++.+||||||||++||++|+ .+|++|||||||++||+..+.++.++++++ +.+||+|||+.+ +..+||++
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~ 292 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLH 292 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEE
Confidence 4678899999999999999997 578999999999999999999999999876 569999999965 55689987
Q ss_pred -EEEeCCeEeEecCCHH
Q psy2684 76 -IHLDMKKLFYYKGNFT 91 (356)
Q Consensus 76 -~~l~~g~~~~~~g~~~ 91 (356)
++|.+|.......+.+
T Consensus 293 ~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEESSSCEEEEECCC-
T ss_pred EEEEeCCEEEEEEEEcc
Confidence 8888887766555544
No 119
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.64 E-value=2.3e-16 Score=157.37 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=70.2
Q ss_pred CCCCCcC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEE
Q psy2684 3 EKSTKEF-SGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 3 ~~~~~~L-SgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
.+++.+| ||||+||++||++|+.+| ++|||||||++||+.++..+.++|+++ +.|||+||||.+++. .||++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 3678888 999999999999999999 999999999999999998888777665 689999999999875 6999999
Q ss_pred EeCC
Q psy2684 78 LDMK 81 (356)
Q Consensus 78 l~~g 81 (356)
|+.+
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 120
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.63 E-value=1.5e-16 Score=136.59 Aligned_cols=72 Identities=4% Similarity=-0.030 Sum_probs=66.4
Q ss_pred CCCCCcCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEe---cChhHHhhhc
Q psy2684 3 EKSTKEFSGGWRIRVSLARA-----LFLEPTLLLLDE--PTNHLDLNAVIWLDNYLQTWKKTLLVVS---HDQSFLNNIC 72 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~-----l~~~p~~llLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi~vs---Hd~~~l~~~~ 72 (356)
++++.+|||||+||++||++ |+.+|++||||| ||++||+...+++.+++++.+.|+|+++ ||++++..+|
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHH
Confidence 45677899999999999996 999999999999 9999999999999999998777788888 5999999999
Q ss_pred CE
Q psy2684 73 TD 74 (356)
Q Consensus 73 ~~ 74 (356)
++
T Consensus 151 ~r 152 (178)
T 1ye8_A 151 RL 152 (178)
T ss_dssp TC
T ss_pred hc
Confidence 98
No 121
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.62 E-value=4.6e-16 Score=147.57 Aligned_cols=83 Identities=17% Similarity=0.054 Sum_probs=74.3
Q ss_pred CCCCC-cCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhc
Q psy2684 3 EKSTK-EFSGGWRIRVSLARALF---------LEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNIC 72 (356)
Q Consensus 3 ~~~~~-~LSgGe~~r~~la~~l~---------~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~ 72 (356)
++++. .|||||+||++||++|+ .+|+||||||||++||+..+..|.+++.++..|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45666 89999999999999999 8999999999999999999999999999888899999995 43 79
Q ss_pred CEEEEEeCCeEeEecCCH
Q psy2684 73 TDIIHLDMKKLFYYKGNF 90 (356)
Q Consensus 73 ~~i~~l~~g~~~~~~g~~ 90 (356)
|++++|++|++... |+.
T Consensus 335 ~~i~~l~~G~i~~~-g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFTPV-ADE 351 (359)
T ss_dssp SEEEEEETTEEEEC-CCT
T ss_pred CEEEEEECCEEEec-CCH
Confidence 99999999999864 443
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.60 E-value=1.5e-18 Score=160.91 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=51.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~ 239 (356)
.|+++||++.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|..
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 478999999994 67999999999999999999999999999999999999 788853
No 123
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.57 E-value=2.3e-17 Score=145.14 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 191 ~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
+++.+|+++ .+|++++|+||||||||||+++|+|+ +|++|+|.
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 445688885 89999999999999999999999999 99999994
No 124
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.2e-16 Score=151.92 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=76.6
Q ss_pred CCcCCHHHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHhcCcEEEEEecChh------HHhhhc
Q psy2684 6 TKEFSGGWRIRVSLARA--LFLEPTL----LLLDE-PTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQS------FLNNIC 72 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~--l~~~p~~----llLDE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~l~~~~ 72 (356)
+.+|||||+||++||++ |+.+|++ ||||| ||++||+. .+.|.+++++++.|+|+|+||.+ ++..+|
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhc
Confidence 56899999999999999 9999999 99999 99999999 88899999999999999999987 777899
Q ss_pred CE-----EEEEe-CCeEeEecCCHHH
Q psy2684 73 TD-----IIHLD-MKKLFYYKGNFTL 92 (356)
Q Consensus 73 ~~-----i~~l~-~g~~~~~~g~~~~ 92 (356)
|+ |++|+ +|+++ .|+.+.
T Consensus 312 dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 312 PELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred ccccCCEEEEEeCCCcEE--ECCHHH
Confidence 99 99999 99987 566543
No 125
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.56 E-value=8.7e-18 Score=156.85 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=90.4
Q ss_pred CcEEEecceeeeCCCccccccceee-----------------------ecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFG-----------------------LDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~-----------------------i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~ 234 (356)
..+++++|++.|. ++++++++. +.+|++++|+||||||||||+++|+|+++|..
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3589999999993 577777764 89999999999999999999999999998864
Q ss_pred CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--
Q psy2684 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 312 (356)
Q Consensus 235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-- 312 (356)
|. .+++|++|+.. +++. |+.+++...
T Consensus 119 G~-------------------------------------------------~~v~~v~qd~~--~~~~-t~~e~~~~~~~ 146 (312)
T 3aez_A 119 HH-------------------------------------------------PRVDLVTTDGF--LYPN-AELQRRNLMHR 146 (312)
T ss_dssp TC-------------------------------------------------CCEEEEEGGGG--BCCH-HHHHHTTCTTC
T ss_pred CC-------------------------------------------------CeEEEEecCcc--CCcc-cHHHHHHHHHh
Confidence 31 24789999863 5555 777765321
Q ss_pred cCC----CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 313 FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 313 ~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
.+. ..+.+.+.|+.++ .+... .++..|||||+||+++|+++
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~a~al 191 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPGAEQV 191 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEEEEEE
T ss_pred cCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhhHHHh
Confidence 122 2355677888887 44332 35679999999999998764
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.56 E-value=8.1e-15 Score=140.14 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=67.9
Q ss_pred CCCCcCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCE
Q psy2684 4 KSTKEFSGGWRIRV------SLARALFLE-PTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTD 74 (356)
Q Consensus 4 ~~~~~LSgGe~~r~------~la~~l~~~-p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~ 74 (356)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+++.++. .+||+||||.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 557888999 99999999999999999999999998863 59999999987 5788999
Q ss_pred EEEEeC
Q psy2684 75 IIHLDM 80 (356)
Q Consensus 75 i~~l~~ 80 (356)
+++|+.
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.55 E-value=9e-17 Score=154.86 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=83.1
Q ss_pred ccccccceeeecCCC--------------------eEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCee
Q psy2684 193 KVLLEKVNFGLDMES--------------------RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV 252 (356)
Q Consensus 193 ~~~l~~~sl~i~~ge--------------------~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~i 252 (356)
+.+++++||+|++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999988754321
Q ss_pred eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc
Q psy2684 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~ 332 (356)
+.+|++|++ .++..++.++..... ....+.++|+.+++...
T Consensus 109 ----------------------------------~~~~v~q~~---~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 109 ----------------------------------MERHPYKHP---NIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp ----------------------------------CCCEEEECS---SCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC
T ss_pred ----------------------------------eeEEecccc---ccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc
Confidence 015666653 234444444321111 12346788899988764
Q ss_pred cccCCCCCCChH--HHHHHHHHHHc
Q psy2684 333 AHTIPIRDLSGG--QKARVALAELT 355 (356)
Q Consensus 333 ~~~~~~~~LSGG--qkqRvalA~~~ 355 (356)
. ..+ . |||| |+||++||+++
T Consensus 150 ~-~~~-~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 150 D-FFI-I-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp S-EEE-E-EESSCCCHHHHHHHHHH
T ss_pred C-CeE-E-eCCCCccHHHHHHHHHH
Confidence 3 223 3 9999 99999999986
No 128
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.54 E-value=3.7e-17 Score=144.95 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=33.4
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.-|+++||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~ 57 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSC 57 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCE
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecc
Confidence 3689999999999999999999999999999999999 6 99988 7654
No 129
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=3.9e-18 Score=156.07 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=59.4
Q ss_pred eEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCce
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 287 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ 287 (356)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. ......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-----------------------------------~~~~~~ 48 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-----------------------------------TVEIKA 48 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC-----------------------------------CCSCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-----------------------------------ceeeee
Confidence 479999999999999999999999999999998765420 011346
Q ss_pred EEEeecCcCCCCCCCCCHHHHHHHhcCC----CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 288 IGKFDQHSGEHLFPDDTPCEYLMKLFNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 288 ig~~~Q~~~~~l~~~~t~~e~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
++|++|++ .+++.+|+.+++...... ....+.+++. .... .+.+.+||||||||+++||++
T Consensus 49 i~~v~q~~--~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~----~~~~-~~~~~~LS~G~~qrv~iaRal 113 (270)
T 3sop_A 49 IGHVIEEG--GVKMKLTVIDTPGFGDQINNENCWEPIEKYIN----EQYE-KFLKEEVNIARKKRIPDTRVH 113 (270)
T ss_dssp EEESCC------CCEEEEECCCC--CCSBCTTCSHHHHHHHH----HHHH-HHHHHHSCTTCCSSCCCCSCC
T ss_pred eEEEeecC--CCcCCceEEechhhhhhcccHHHHHHHHHHHH----HHHH-hhhHHhcCcccchhhhhheee
Confidence 89999975 356666776654322111 1123333332 1112 235679999999999999875
No 130
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.51 E-value=4.2e-14 Score=137.80 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=67.5
Q ss_pred CCCCcCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC---cEEEEEecChhHHhhhcCEEE
Q psy2684 4 KSTKEFSGGWRIRVSLARALF----LEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~----~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~l~~~~~~i~ 76 (356)
+++..|||||+|+++||++|+ .+|++|||||||++||+..+.++.++++++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 556789999999999999999 5799999999999999999999999998763 5999999997765 5699999
Q ss_pred EEe
Q psy2684 77 HLD 79 (356)
Q Consensus 77 ~l~ 79 (356)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 131
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.48 E-value=1.1e-15 Score=148.79 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=59.2
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
++++++++++.|..+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4689999999995467799999 999999999999999999999999999999999999998875
No 132
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.47 E-value=1.3e-14 Score=123.49 Aligned_cols=66 Identities=6% Similarity=0.075 Sum_probs=56.7
Q ss_pred CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHH---hcCcEEEEEecChh
Q psy2684 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN----------------AVIWLDNYLQ---TWKKTLLVVSHDQS 66 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~----------------~~~~l~~~l~---~~~~tvi~vsHd~~ 66 (356)
+...||||+||++||++++.+|++|+|||||++||+. ....+.+.++ +-+.|+|+||||++
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 4567999999999999999999999999999999999 5566666643 33789999999999
Q ss_pred HHhhh
Q psy2684 67 FLNNI 71 (356)
Q Consensus 67 ~l~~~ 71 (356)
++..+
T Consensus 161 ~~~~~ 165 (171)
T 4gp7_A 161 EVEEV 165 (171)
T ss_dssp HHHHE
T ss_pred Hhhhh
Confidence 99763
No 133
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.45 E-value=6.5e-14 Score=135.57 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.4
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~ 234 (356)
..+++++|++.+| +++|+||||||||||+++|.++..+.+
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~ 88 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRA 88 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCC
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4789999999999 999999999999999999988887543
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.44 E-value=1.9e-15 Score=140.31 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=86.9
Q ss_pred cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
+.++||++.+|++++|+|||||||||+++.|+|+++|++|+|.+.|.++.... +.+ -++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~-----------a~~--ql~-------- 148 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA-----------ASD--QLE-------- 148 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH-----------HHH--HHH--------
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchh-----------HHH--HHH--------
Confidence 46789999999999999999999999999999999999999999987652100 000 000
Q ss_pred CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHH
Q psy2684 276 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 353 (356)
Q Consensus 276 ~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~ 353 (356)
.+..+..++|++|++. .+++..++.+++.... +.. ..+++.+|+.+.... ++.+|| |||++||+
T Consensus 149 -----~~~~~~~i~~v~q~~~-~~~~~~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~-~~~eLS---kqr~~iar 214 (302)
T 3b9q_A 149 -----IWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGK 214 (302)
T ss_dssp -----HHHHHHTCEEECCC---CCCHHHHHHHHHHHHHHTTCS----EEEECCCCCSSCCHH-HHHHHH---HHHHHHHT
T ss_pred -----HHHHhcCceEEEecCC-ccCHHHHHHHHHHHHHHcCCc----chHHhcCCCCcchhH-HHHHHH---HHHHHHHH
Confidence 0001235899999863 2566677777764321 111 124667777665544 568999 99999998
Q ss_pred HcC
Q psy2684 354 LTL 356 (356)
Q Consensus 354 ~~l 356 (356)
+++
T Consensus 215 al~ 217 (302)
T 3b9q_A 215 IVS 217 (302)
T ss_dssp TST
T ss_pred hhc
Confidence 863
No 135
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.40 E-value=6.8e-15 Score=123.66 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=55.2
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
..+++++.| ++..+++++||+|.+|++++|+||||||||||+++|+|++ |++|+|.++|.++
T Consensus 9 ~~~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 9 PDEFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp CSHHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred CCHHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 345778888 5567899999999999999999999999999999999999 9999999887554
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.39 E-value=1.6e-15 Score=146.75 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=92.6
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN 258 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n 258 (356)
.++++++++.| +...+|+++ +. .+|++++|+||||||||||+++|+|++.|++|+|.+.+.++......
T Consensus 143 ~~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~-------- 211 (418)
T 1p9r_A 143 RLDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG-------- 211 (418)
T ss_dssp CCCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSS--------
T ss_pred CCCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCC--------
Confidence 46778888877 445678888 54 89999999999999999999999999999999999988765321100
Q ss_pred CCchhhHHHHHhCCCCCCcceeEeCCCceEEE---------eecCcCCCCCCC----CCHHHHHHHh-cC---------C
Q psy2684 259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---------FDQHSGEHLFPD----DTPCEYLMKL-FN---------L 315 (356)
Q Consensus 259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~---------~~Q~~~~~l~~~----~t~~e~~~~~-~~---------~ 315 (356)
........++++ +.|+|...++.+ .|+.+++... .+ .
T Consensus 212 --------------------~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~ 271 (418)
T 1p9r_A 212 --------------------IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 271 (418)
T ss_dssp --------------------SEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred --------------------cceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh
Confidence 000001112333 347765322333 4565555332 11 1
Q ss_pred CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684 316 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 316 ~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~ 355 (356)
....+...|..+|+.... .+.+|||||+|| ||+++
T Consensus 272 ~~~~~i~rL~~lgl~~~~---~~~~LSgg~~QR--LaraL 306 (418)
T 1p9r_A 272 TAVGAVTRLRDMGIEPFL---ISSSLLGVLAQR--LVRTL 306 (418)
T ss_dssp SSHHHHHHHHHHTCCHHH---HHHHEEEEEEEE--EEEEE
T ss_pred hHHHHHHHHHHcCCcHHH---HHHHHHHHHHHH--hhhhh
Confidence 223445567888887643 457999999999 66654
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.39 E-value=9.1e-14 Score=131.31 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=79.4
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-cCCCceeEe-eeccccCcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGKVLLE-KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p~~G~i~~~-g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~ 272 (356)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.+. |. |+.|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~------------------g~~t-------- 257 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL------------------GQHT-------- 257 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------------------------
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCC------------------Cccc--------
Confidence 46677764 4799999999999999999999999999 999999775 32 1111
Q ss_pred CCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHH----HHHHHhhcCCCCccccCCCCCCChHHHHH
Q psy2684 273 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348 (356)
Q Consensus 273 ~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSGGqkqR 348 (356)
.....+++++|+. .+++..++.++. ....+..+ +.++++.+++....+. ++.+|| ||+||
T Consensus 258 ----------t~~~~i~~v~q~~--~l~dtpgv~e~~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~-~~~~lS-G~~~r 321 (358)
T 2rcn_A 258 ----------TTAARLYHFPHGG--DVIDSPGVREFG--LWHLEPEQITQGFVEFHDYLGHCKYRDC-KHDADP-GCAIR 321 (358)
T ss_dssp -----------CCCEEEECTTSC--EEEECHHHHTCC--CCCCCHHHHHHTSGGGGGGTTCSSSTTC-CSSSCT-TCHHH
T ss_pred ----------eEEEEEEEECCCC--EecCcccHHHhh--hcCCCHHHHHHHHHHHHHHcCCchhcCC-CcccCC-HHHHH
Confidence 1134688999875 345555555531 12333333 3456888898877665 568999 99999
Q ss_pred HHHHHHc
Q psy2684 349 VALAELT 355 (356)
Q Consensus 349 valA~~~ 355 (356)
++||+.+
T Consensus 322 ~ala~gl 328 (358)
T 2rcn_A 322 EAVENGA 328 (358)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 9999875
No 138
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.38 E-value=3.2e-14 Score=128.13 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHh
Q psy2684 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270 (356)
Q Consensus 191 ~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~ 270 (356)
+++.+|+++||++.+|+++||+||||||||||+++|+|++ |.+.++
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------------------------------ 55 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------------------------------ 55 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC------------------------------
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc------------------------------
Confidence 4567999999999999999999999999999999999976 444332
Q ss_pred CCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---C------CHHHHHHHHhhcCCCCccccCCCCCC
Q psy2684 271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---L------PYEKSRRQLGMFGLPSYAHTIPIRDL 341 (356)
Q Consensus 271 g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~------~~~~~~~~L~~~~l~~~~~~~~~~~L 341 (356)
..+..++|++|+. ++...++.++...... . ....+.+.|+.+ .+... .++..|
T Consensus 56 ------------~~~~~i~~v~~d~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~-~~~~~l 117 (245)
T 2jeo_A 56 ------------QRQRKVVILSQDR---FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKT-VEVPTY 117 (245)
T ss_dssp ------------GGGCSEEEEEGGG---GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCC-EEECCE
T ss_pred ------------ccCCceEEEeCCc---CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCC-eecccc
Confidence 0123589999984 5567788776543211 1 123345555543 22233 356799
Q ss_pred ChHHHHHHHH
Q psy2684 342 SGGQKARVAL 351 (356)
Q Consensus 342 SGGqkqRval 351 (356)
|+||+||+++
T Consensus 118 s~g~~~r~~~ 127 (245)
T 2jeo_A 118 DFVTHSRLPE 127 (245)
T ss_dssp ETTTTEECSS
T ss_pred cccccCccCc
Confidence 9999999865
No 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.38 E-value=1.1e-14 Score=137.92 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=86.9
Q ss_pred ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCC
Q psy2684 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 276 (356)
Q Consensus 197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~ 276 (356)
.++||++.+|++++|+|||||||||+++.|+|+++|++|+|.+.+.++.... +.+ -++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~-----------a~e--ql~--------- 205 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA-----------ASD--QLE--------- 205 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH-----------HHH--HHH---------
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccc-----------hhH--HHH---------
Confidence 4689999999999999999999999999999999999999999987652100 000 000
Q ss_pred cceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHH
Q psy2684 277 KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354 (356)
Q Consensus 277 ~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~ 354 (356)
.+..+..++|++|++. .+++..++.+++.... +.. ..+++.+|+.+.... ++.+|| +||++||++
T Consensus 206 ----~~~~r~~i~~v~q~~~-~~~p~~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~-~~~eLS---kqr~~iara 272 (359)
T 2og2_A 206 ----IWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKI 272 (359)
T ss_dssp ----HHHHHHTCEEECCSSS-SCCHHHHHHHHHHHHHHTTCS----EEEEECCCCSSCCHH-HHHHHH---HHHHHHHHH
T ss_pred ----HHHHhcCeEEEEeccc-ccChhhhHHHHHHHHHhCCCH----HHHHHhcCCChhhhh-HHHHHH---HHHHHHHHH
Confidence 0001235899999852 1556667777764321 111 124567787665544 568999 999999998
Q ss_pred cC
Q psy2684 355 TL 356 (356)
Q Consensus 355 ~l 356 (356)
++
T Consensus 273 l~ 274 (359)
T 2og2_A 273 VS 274 (359)
T ss_dssp ST
T ss_pred Hh
Confidence 63
No 140
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.38 E-value=1.1e-13 Score=117.70 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=28.6
Q ss_pred cceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
++||++++||+++|+||||||||||++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999999999999998553
No 141
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.37 E-value=4e-14 Score=133.80 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=58.5
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|.+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 4688999999995467799999 9999999999999999999999999999999999988776543
No 142
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.36 E-value=8.4e-14 Score=130.89 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=47.2
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
.+++++||.|.+|++++|+||||||||||+++|+|+++|++|.|.++|.+
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 37899999999999999999999999999999999999999999998753
No 143
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.30 E-value=9.9e-14 Score=118.92 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=25.6
Q ss_pred eEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
+++|+||||||||||+++|+|++. |.++|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~ 31 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGF 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCE
Confidence 589999999999999999999985 555554
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=1.6e-13 Score=127.55 Aligned_cols=119 Identities=13% Similarity=-0.030 Sum_probs=78.5
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE---eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL---EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~---~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
+++..|++++|+||||||||||+++|. +..|+.|+|.+ +|.++.. .
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~-----------------------------~- 208 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT-----------------------------G- 208 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC-----------------------------C-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee-----------------------------e-
Confidence 345679999999999999999999999 99999999998 5544320 0
Q ss_pred ceeEeCCCceEEEeecCcCCC---CCCCCCHHHHHHH-----------hcC-----CCHHHHHHHHhhcCCCCccccCCC
Q psy2684 278 GELRKSPRLRIGKFDQHSGEH---LFPDDTPCEYLMK-----------LFN-----LPYEKSRRQLGMFGLPSYAHTIPI 338 (356)
Q Consensus 278 g~~~~~~~~~ig~~~Q~~~~~---l~~~~t~~e~~~~-----------~~~-----~~~~~~~~~L~~~~l~~~~~~~~~ 338 (356)
..... ...+||++|+|... +++.+|+ +++.. ..+ .+...++++|+.+++.....++++
T Consensus 209 ~~~~~--~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 285 (302)
T 2yv5_A 209 VRLIP--FGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL 285 (302)
T ss_dssp EEEEE--ETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred EEEEE--cCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 00111 12479999988532 2245666 44310 111 123458899999999863333467
Q ss_pred CCCChHHHHHHHHHH
Q psy2684 339 RDLSGGQKARVALAE 353 (356)
Q Consensus 339 ~~LSGGqkqRvalA~ 353 (356)
..|||.+++++.||+
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 899998899999986
No 145
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.26 E-value=1.9e-12 Score=129.19 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHH---HHHHHhcCcEEEEEecCh--------
Q psy2684 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN-----AVIWL---DNYLQTWKKTLLVVSHDQ-------- 65 (356)
Q Consensus 2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~-----~~~~l---~~~l~~~~~tvi~vsHd~-------- 65 (356)
.++++.+|||||+||+++|+++..+|++|||| ||++||.. .+..+ .+.+++.+.|||+||||.
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~ 425 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSI 425 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSS
T ss_pred EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccc
Confidence 35677899999999999999999999999999 99999998 66654 445556689999999999
Q ss_pred --hHHhhhcCEEEEEeCCe
Q psy2684 66 --SFLNNICTDIIHLDMKK 82 (356)
Q Consensus 66 --~~l~~~~~~i~~l~~g~ 82 (356)
.++..+||+|++|+.|+
T Consensus 426 ~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 426 TDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CSSCCTTTCSEEEEEEEEE
T ss_pred cCcccceeeeEEEEEEEEE
Confidence 88888999999998876
No 146
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.20 E-value=5.5e-13 Score=117.12 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhh
Q psy2684 12 GWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNN 70 (356)
Q Consensus 12 Ge~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~ 70 (356)
|||||++||++|+.+|++|||||||++ ++.++.++|+++ +.||| ||||++++..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 777788888766 56888 9999987754
No 147
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.19 E-value=3.9e-12 Score=121.01 Aligned_cols=138 Identities=15% Similarity=0.074 Sum_probs=84.2
Q ss_pred EEecceee---eCC-Ccccc---------ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccC
Q psy2684 181 GLHDVTFG---YPG-GKVLL---------EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD 247 (356)
Q Consensus 181 ~~~~l~~~---~~~-~~~~l---------~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~ 247 (356)
++++++|. |++ +..++ +++||.|.+|++++|+||||||||||+++|+|+++|++|.|.++|..-.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-- 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-- 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC--
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc--
Confidence 56778877 732 12344 9999999999999999999999999999999999999999999864210
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEee-cCcCCCCCCCCCHHHHHHHhcC----------CC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD-QHSGEHLFPDDTPCEYLMKLFN----------LP 316 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~-Q~~~~~l~~~~t~~e~~~~~~~----------~~ 316 (356)
.. ...+..++|++ |+.....+...|+.+++..... ..
T Consensus 215 --------------------------~~------~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 215 --------------------------FL------PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp --------------------------CC------TTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred --------------------------Cc------cccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 00 00134688998 7653222356788888764321 11
Q ss_pred HHHHHHHHhhcCCCCc--cccCCCCCCChHHHHHHHHHH
Q psy2684 317 YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAE 353 (356)
Q Consensus 317 ~~~~~~~L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~ 353 (356)
..++.+++..+.-.+. ..... ..-+.+..+|++.+.
T Consensus 263 ~~~~~~~l~~l~~g~~~~l~t~H-~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 263 GGEAYDFINVAASGHGGSITSCH-AGSCELTFERLALMV 300 (361)
T ss_dssp STHHHHHHHHHHTTCCSCEEEEE-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHHHH
Confidence 1345556655432221 11112 123566777777654
No 148
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.16 E-value=5.9e-13 Score=123.60 Aligned_cols=116 Identities=19% Similarity=0.106 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCC
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~ 284 (356)
+|++++|+|||||||||++++|+|+++|++|+|.+.|.++... ++-+ -++ .+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~-----------~a~~--ql~-------------~~~~ 154 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA-----------AGGT--QLS-------------EWGK 154 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST-----------TTTH--HHH-------------HHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh-----------hHHH--HHH-------------HHHH
Confidence 6899999999999999999999999999999999998775310 0000 000 0001
Q ss_pred CceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 285 ~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
+..++|++|++. +++..++.+++.... +.. ..+++..|..+... ..++..++||++|||++.
T Consensus 155 ~~~i~~v~q~~~--~~p~~~v~~~v~~~~~~~~d----~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~ 218 (304)
T 1rj9_A 155 RLSIPVIQGPEG--TDSAALAYDAVQAMKARGYD----LLFVDTAGRLHTKH----NLMEELKKVKRAIAKADP 218 (304)
T ss_dssp HHTCCEECCCTT--CCHHHHHHHHHHHHHHHTCS----EEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCT
T ss_pred hcCceEEEeCCC--CCHHHHHHHHHHHHHhCCCC----EEEecCCCCCCchH----HHHHHHHHHHHHHHHhhc
Confidence 235789999863 555666666654211 100 00223334332221 234555689999999863
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=9.2e-13 Score=122.28 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=66.0
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE---eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL---EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~---~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
|++..|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++... .
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~-----------------------------~ 214 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTT-----------------------------A 214 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCS-----------------------------C
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceee-----------------------------e
Confidence 456689999999999999999999999999999999998 66554210 0
Q ss_pred ceeEeCCCceEEEeecCcCC--------------CCCCCCCHHHHHHHhc----CCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684 278 GELRKSPRLRIGKFDQHSGE--------------HLFPDDTPCEYLMKLF----NLPYEKSRRQLGMFGLPSYAHTIPIR 339 (356)
Q Consensus 278 g~~~~~~~~~ig~~~Q~~~~--------------~l~~~~t~~e~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~ 339 (356)
.... ...+||++|.|.. .++++.++ +++.... ......+.++|+.++|.....++.+.
T Consensus 215 -~~~~--~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 215 -QLLK--FDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp -CEEE--CTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred -EEEE--cCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 0110 1246788887641 25667666 5443211 12234688999999996333333557
Q ss_pred CCCh
Q psy2684 340 DLSG 343 (356)
Q Consensus 340 ~LSG 343 (356)
.||+
T Consensus 291 ~lse 294 (301)
T 1u0l_A 291 MFYE 294 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7875
No 150
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.13 E-value=5.5e-14 Score=130.53 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=22.5
Q ss_pred ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc-cccCCCceeEeeecc
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE-LTPNKGKVLLEKVNF 244 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl-~~p~~G~i~~~g~~~ 244 (356)
+||++.| +++.++++++|+| +|+|+||+|||||+++|.|. ..|++| +.++|.++
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 4788899 6678999999988 99999999999999999998 889988 77765443
No 151
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.12 E-value=2.9e-12 Score=111.71 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=37.4
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc-----ccCCCceeEe
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGKVLLE 240 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~-----~p~~G~i~~~ 240 (356)
+++++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.++|.. .|+.|.+.+.
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~ 65 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI 65 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee
Confidence 478999999993 357777 899999999999999999999999999998 8888887653
No 152
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.11 E-value=1.6e-10 Score=108.20 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=28.9
Q ss_pred cceeeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|++.+| +++|+||||||||||+.+|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 568888888 99999999999999999999665
No 153
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.10 E-value=6.9e-13 Score=112.80 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeecc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNF 244 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~ 244 (356)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 579999999999999999999999998 89999998764
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.09 E-value=3e-11 Score=118.27 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=48.6
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~ 245 (356)
.+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 479999999999 999999999999999999999999999999999998764
No 155
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.09 E-value=3.5e-13 Score=116.11 Aligned_cols=41 Identities=27% Similarity=0.227 Sum_probs=36.5
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.+.+|++++|+|||||||||++++|+|. |+.|.|.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 4789999999999999999999999998 7889999987654
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.07 E-value=1.9e-11 Score=111.10 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=53.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-CCceeEeeecccc
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGKVLLEKVNFGL 246 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-~G~i~~~g~~~~~ 246 (356)
+++++++++. .+|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~ 66 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY 66 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee
Confidence 3567788753 4899998 8999999999999999999999999999998 9999999977643
No 157
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.06 E-value=7.6e-12 Score=109.52 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=63.6
Q ss_pred ecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684 203 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 282 (356)
Q Consensus 203 i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~ 282 (356)
..+|++++|+||||||||||+++|+|++.|
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------------------------------------- 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------------------------------------- 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------------------------------------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------------------------------------
Confidence 467888888888888888888888886543
Q ss_pred CCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----CCHHHHHHHHhhcCCCCccccCCCCCCChHHH----HHHHHHHH
Q psy2684 283 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQK----ARVALAEL 354 (356)
Q Consensus 283 ~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqk----qRvalA~~ 354 (356)
+++|++|+....-....++.++....++ .....+.+.++.+++...... |+..+|+||+ ||+++|++
T Consensus 33 ----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 33 ----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEM-PVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEE-CCEETTTTEECSSCEEECCCSE
T ss_pred ----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCC-CcccCcccCCCCCeEEeCCCcE
Confidence 2677888763221244566665432222 234556778888888766554 7899999974 56666654
Q ss_pred c
Q psy2684 355 T 355 (356)
Q Consensus 355 ~ 355 (356)
+
T Consensus 108 l 108 (211)
T 3asz_A 108 V 108 (211)
T ss_dssp E
T ss_pred E
Confidence 3
No 158
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=8.9e-12 Score=117.39 Aligned_cols=66 Identities=24% Similarity=0.222 Sum_probs=59.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~ 245 (356)
+++++++++.| ++..+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.++.
T Consensus 29 ~ie~~~~~~~~-~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 29 LAESRRADHRA-AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp HHTCSSHHHHH-HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred HHeeCCccccc-ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 35678888888 4567999999999999999999999999999999999999999999999988763
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.03 E-value=1.2e-12 Score=123.38 Aligned_cols=134 Identities=24% Similarity=0.313 Sum_probs=84.3
Q ss_pred EEEecceeeeCCCccccccceeeecCC-------CeEEEEcCCCCCcchhhhhhcccc----ccCCCceeEeeeccccCc
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDME-------SRVALVGPNGIGKSTFLNLLKGEL----TPNKGKVLLEKVNFGLDM 248 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~g-------e~~~i~G~nGsGKSTll~~l~gl~----~p~~G~i~~~g~~~~~~~ 248 (356)
++.++++..| ++..+++++++.|..| +.++|+||||+|||||++++++.+ .+.+|.+..++.++
T Consensus 19 lr~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 19 LRPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM---- 93 (334)
T ss_dssp TSCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH----
T ss_pred cCCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH----
Confidence 4567788778 5667899999999877 899999999999999999999998 66667665443222
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--------CH
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--------PY 317 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--------~~ 317 (356)
...+.. .....|.|++|... +.+ ++.+.+... ... ..
T Consensus 94 -----------------~~~~~~-----------~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~~~i~~~~~~~~ 141 (334)
T 1in4_A 94 -----------------AAILTS-----------LERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQIDIMIGKGPSA 141 (334)
T ss_dssp -----------------HHHHHH-----------CCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSCCCC--------
T ss_pred -----------------HHHHHH-----------ccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcccceeeccCccc
Confidence 111100 01246899998752 332 455555321 111 11
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHH
Q psy2684 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352 (356)
Q Consensus 318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA 352 (356)
..+...+..+++.. ... ++..||+|++||++++
T Consensus 142 ~~i~~~l~~~~li~-at~-~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 142 KSIRIDIQPFTLVG-ATT-RSGLLSSPLRSRFGII 174 (334)
T ss_dssp -------CCCEEEE-EES-CGGGSCHHHHTTCSEE
T ss_pred ccccccCCCeEEEE-ecC-CcccCCHHHHHhcCce
Confidence 22334556666654 333 5589999999998643
No 160
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.01 E-value=5.9e-11 Score=113.01 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=29.7
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++++++++.+| +++|+|||||||||++.+|+..
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999 8999999999999999999844
No 161
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=2.8e-11 Score=112.11 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=62.4
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE---eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL---EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~---~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
+++.+|++++|+||||+|||||+++|+|+..|..|+|.+ +|..++. ..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~-----------------------------~~ 218 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR-----------------------------HV 218 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CC-----------------------------CC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccccc-----------------------------HH
Confidence 567789999999999999999999999999999999987 4332210 00
Q ss_pred ceeEeCCCceEEEeecCcCCCCCC--CCCHHHHHHH-------h------cC-----CCHHHHHHHHhhcCCCCccccCC
Q psy2684 278 GELRKSPRLRIGKFDQHSGEHLFP--DDTPCEYLMK-------L------FN-----LPYEKSRRQLGMFGLPSYAHTIP 337 (356)
Q Consensus 278 g~~~~~~~~~ig~~~Q~~~~~l~~--~~t~~e~~~~-------~------~~-----~~~~~~~~~L~~~~l~~~~~~~~ 337 (356)
.... ..+||++|.|....+. ..++ +++.. . .+ .+...++++|+.+++.......+
T Consensus 219 -~~~~---~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y 293 (307)
T 1t9h_A 219 -ELIH---TSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY 293 (307)
T ss_dssp -CEEE---ETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred -HHhh---cCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH
Confidence 1111 1268999998533222 4566 55521 1 11 12345788999999976443323
Q ss_pred CCCCChHHHH
Q psy2684 338 IRDLSGGQKA 347 (356)
Q Consensus 338 ~~~LSGGqkq 347 (356)
..|+.|++|
T Consensus 294 -~~lls~~~~ 302 (307)
T 1t9h_A 294 -VEFMTEIKD 302 (307)
T ss_dssp -HHHHHHHHT
T ss_pred -HHHHHHHhh
Confidence 567777776
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.95 E-value=3.2e-11 Score=112.20 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=57.6
Q ss_pred CcEEEecceeeeCCCccccccceeee-------------------cCCCeEEEEcCCCCCcchhhhhhccccc--cCCCc
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGL-------------------DMESRVALVGPNGIGKSTFLNLLKGELT--PNKGK 236 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i-------------------~~ge~~~i~G~nGsGKSTll~~l~gl~~--p~~G~ 236 (356)
.+++++||++.| .+++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 357899999999 26899999988 8999999999999999999999999998 99999
Q ss_pred eeE---eeecc
Q psy2684 237 VLL---EKVNF 244 (356)
Q Consensus 237 i~~---~g~~~ 244 (356)
|.+ +|...
T Consensus 113 i~vi~~d~~~~ 123 (308)
T 1sq5_A 113 VELITTDGFLH 123 (308)
T ss_dssp EEEEEGGGGBC
T ss_pred EEEEecCCccC
Confidence 999 76553
No 163
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.90 E-value=2.9e-09 Score=98.13 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=55.1
Q ss_pred CcCCHHH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHHH----HhcCcEEEEEecCh--h------
Q psy2684 7 KEFSGGW-RIRVSLARALFLEPTLLLLDEPTN---H---LDL-NAVIWLDNYL----QTWKKTLLVVSHDQ--S------ 66 (356)
Q Consensus 7 ~~LSgGe-~~r~~la~~l~~~p~~llLDEPt~---~---LD~-~~~~~l~~~l----~~~~~tvi~vsHd~--~------ 66 (356)
..+|.++ ++++. |+++..+|++|||||||+ + +|. ..+..+.+.| ++++.|||++||+. +
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 5689998 56666 999999999999999999 4 444 4444444443 55689999999995 5
Q ss_pred --------------HHhhhcCEEEEEeCCe
Q psy2684 67 --------------FLNNICTDIIHLDMKK 82 (356)
Q Consensus 67 --------------~l~~~~~~i~~l~~g~ 82 (356)
.+.+.||+|++|++|+
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC-
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 7888999999998775
No 164
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.88 E-value=9.8e-11 Score=124.54 Aligned_cols=55 Identities=31% Similarity=0.456 Sum_probs=43.8
Q ss_pred CCcEEEec-----ceeeeCCCccccccceeeecC-------CCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 177 PPVLGLHD-----VTFGYPGGKVLLEKVNFGLDM-------ESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 177 ~~~l~~~~-----l~~~~~~~~~~l~~~sl~i~~-------ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
.+++++++ +++.|.++..+++|++|++.+ |++++|+||||||||||++++ |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 45799999 998885556799999999987 999999999999999999999 98764
No 165
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.87 E-value=2.5e-09 Score=112.58 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCCCcCCHHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEecChhHHhhhcCEEE
Q psy2684 4 KSTKEFSGGWRIRVSLARAL--FLEPTLLLLDEPTNHLDLNAVIW----LDNYLQT-WKKTLLVVSHDQSFLNNICTDII 76 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l--~~~p~~llLDEPt~~LD~~~~~~----l~~~l~~-~~~tvi~vsHd~~~l~~~~~~i~ 76 (356)
.....+|+|+.++..+|++| +.+|+++||||||++||+..... +.+.+.+ .+.+||++|||.++. .+||++.
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~ 795 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIP 795 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCT
T ss_pred hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccc
Confidence 44567899999999999998 99999999999999999976433 3344443 578999999996655 6899988
Q ss_pred EEeCCeEeE
Q psy2684 77 HLDMKKLFY 85 (356)
Q Consensus 77 ~l~~g~~~~ 85 (356)
.+.+|++..
T Consensus 796 ~v~ng~v~~ 804 (934)
T 3thx_A 796 TVNNLHVTA 804 (934)
T ss_dssp TEEEEEEEE
T ss_pred eeEeeEEEE
Confidence 888887754
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.84 E-value=1.8e-10 Score=99.51 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=61.0
Q ss_pred CCCcCCHHHHHHHH-HHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEE---EEecCh--hHHhhhcC
Q psy2684 5 STKEFSGGWRIRVS-LAR---ALFLEPTLLLLDE--PTNHLDLNAVIWLDNYLQTWKKTLL---VVSHDQ--SFLNNICT 73 (356)
Q Consensus 5 ~~~~LSgGe~~r~~-la~---~l~~~p~~llLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi---~vsHd~--~~l~~~~~ 73 (356)
+...+|+||++++. +++ |++.+|+|||||| |++++|+...+.|.++++.+..+|| .||||+ +|++++++
T Consensus 80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~ 159 (189)
T 2i3b_A 80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN 159 (189)
T ss_dssp SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT
T ss_pred EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee
Confidence 34469999998884 444 5789999999999 9999999999999999997655553 556998 66666655
Q ss_pred EEEEEeCCeEeEec-CCHH
Q psy2684 74 DIIHLDMKKLFYYK-GNFT 91 (356)
Q Consensus 74 ~i~~l~~g~~~~~~-g~~~ 91 (356)
+++|+++... .|.+
T Consensus 160 ----~~~~~i~~~~~~nr~ 174 (189)
T 2i3b_A 160 ----RKDVKVFNVTKENRN 174 (189)
T ss_dssp ----TCCSEEEECCSSSGG
T ss_pred ----cCCcEEEEeChHhHH
Confidence 3555554432 3443
No 167
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.82 E-value=5.3e-11 Score=114.62 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCHH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhc------------CcEEEEEecC
Q psy2684 9 FSGG--WRIRVSLARALFL----------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW------------KKTLLVVSHD 64 (356)
Q Consensus 9 LSgG--e~~r~~la~~l~~----------~p~~llLDEPt~~LD~~~~~~l~~~l~~~------------~~tvi~vsHd 64 (356)
|||| |+||+.||++|+. +||+++|||||++||+.++..+.+.++++ ..+|++.||+
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 8999 9999999999999 99999999999999998877665555443 1457778899
Q ss_pred hhH--HhhhcCEEE
Q psy2684 65 QSF--LNNICTDII 76 (356)
Q Consensus 65 ~~~--l~~~~~~i~ 76 (356)
.+. ++.+||+|.
T Consensus 235 l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 235 VCHYDFPVLMDKLI 248 (413)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred CCccCHHHHHHHHH
Confidence 887 888888884
No 168
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.81 E-value=1.2e-10 Score=118.01 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=51.9
Q ss_pred cEEEecceeeeCCC-ccccccc----------eeeecCCCeEEEEcCCCCCcchhhhhhcccccc-CCCceeEeeecccc
Q psy2684 179 VLGLHDVTFGYPGG-KVLLEKV----------NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGKVLLEKVNFGL 246 (356)
Q Consensus 179 ~l~~~~l~~~~~~~-~~~l~~~----------sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~i~~~g~~~~~ 246 (356)
.+.++|+++.|+.. +++++.+ +|+++. ++|+||||||||||+++|+|+..| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 57888999999422 2344444 355654 999999999999999999999989 79999999887532
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHH
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~ 310 (356)
... +. ....+..+||++|++ .+++..++.+++.
T Consensus 87 ~~~-------------------------~~----~~~~~~~i~~v~Q~~--~l~~~~tv~e~i~ 119 (608)
T 3szr_A 87 KKL-------------------------VN----EDKWRGKVSYQDYEI--EISDASEVEKEIN 119 (608)
T ss_dssp EEC-------------------------SS----SSCCEEEESCC---C--CCCCHHHHHTTHH
T ss_pred ecC-------------------------Cc----cccceeEEeeecccc--cCCCHHHHHHHHH
Confidence 100 00 011235799999986 3666667766653
No 169
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.80 E-value=1.1e-09 Score=107.08 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=45.4
Q ss_pred cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 4689999999999999999999999999999999999999999987554
No 170
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.77 E-value=2.3e-09 Score=95.20 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=22.9
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhc-ccc
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GEL 230 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~-gl~ 230 (356)
...+++||++.+|++++|+||||||||||+++|+ |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578899999999999999999999999999999 998
No 171
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.76 E-value=2e-09 Score=93.99 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=26.4
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
+++++ .+|++|++++|+||||||||||+++|+|+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46666 6899999999999999999999999999985
No 172
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.75 E-value=1.9e-10 Score=102.09 Aligned_cols=57 Identities=26% Similarity=0.275 Sum_probs=42.9
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.|+++|+...| +. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~-~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFF-AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEE-EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeeccc-CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 47888887766 21 456666 89999999999999999999999999999999998776
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.74 E-value=1.2e-08 Score=89.71 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHH----HHHHHhcCcEEEEEecCh--------hHHhhh
Q psy2684 8 EFSGGWRIRVSLARALFLEPT--LLLLDEPTNHL--DLNAVIWL----DNYLQTWKKTLLVVSHDQ--------SFLNNI 71 (356)
Q Consensus 8 ~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~L--D~~~~~~l----~~~l~~~~~tvi~vsHd~--------~~l~~~ 71 (356)
..|.++.++...+.+...+|+ ++||||||+.+ |+.....+ .++.++.+.|||+++|+. ..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 458999998888888888999 99999999888 98665444 444455688999999999 558889
Q ss_pred cCEEEEEeCCe
Q psy2684 72 CTDIIHLDMKK 82 (356)
Q Consensus 72 ~~~i~~l~~g~ 82 (356)
||+|++|+...
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999998643
No 174
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.74 E-value=3.7e-09 Score=91.14 Aligned_cols=37 Identities=30% Similarity=0.497 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 78999999999999999999999999 999 99987654
No 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.73 E-value=2e-09 Score=93.26 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=30.8
Q ss_pred eeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 200 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 200 sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~ 40 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISH 40 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence 57788999999999999999999999999963 45555543
No 176
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=1.8e-09 Score=104.02 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=39.9
Q ss_pred EEEecceeeeCCCccccccceeeecCCCe--EEEEcCCCCCcchhhhhhcccc
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~--~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++.+ ++.| ++.+ ++++||+|.+|++ ++|+||||||||||+++|+|+.
T Consensus 17 l~~~~-~~~y-~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAG-HVGF-DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCC-CC-C-C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEee-EEEE-CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 56666 8888 5556 9999999999999 9999999999999999999984
No 177
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.72 E-value=1.1e-09 Score=102.71 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684 11 GGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 82 (356)
Q Consensus 11 gGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~ 82 (356)
|||+||++||++|..+|++|||||||+ .+..+.|.. +..-+.|+|+++|+.+ +...|||+++|.+|.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l~~-~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS---SEAYDFYNV-LCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHHHH-HHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHHHH-HhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 899999999999999999999999998 233333333 3322347999999998 667799999998765
No 178
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.70 E-value=1.8e-08 Score=105.80 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HH---H-HhcCcEEEEEecChhHH
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLD-NY---L-QTWKKTLLVVSHDQSFL 68 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~-~~---l-~~~~~tvi~vsHd~~~l 68 (356)
+..+++|+|+++++.++++ +.+|+++||||||++||+.....+. .+ + ++.+.|||++|||.++.
T Consensus 731 ~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 731 KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp ---CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 4578899999999999998 8999999999999999998654432 33 3 33578999999998765
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.69 E-value=1.5e-09 Score=97.77 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=36.0
Q ss_pred CcEEEecc-eeeeCCCccccccceeeecC---CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 178 PVLGLHDV-TFGYPGGKVLLEKVNFGLDM---ESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 178 ~~l~~~~l-~~~~~~~~~~l~~~sl~i~~---ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
++++++|+ ++.|.++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999 99994456799999999999 9999999999999999999999854
No 180
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.68 E-value=9.8e-11 Score=108.23 Aligned_cols=47 Identities=21% Similarity=0.080 Sum_probs=42.6
Q ss_pred ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~ 245 (356)
++++|+ +|++++|+|+||+||||++..|++.+.+..|+|.+.+.++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 567777 89999999999999999999999999999999999887753
No 181
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.68 E-value=4.5e-09 Score=108.61 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=42.5
Q ss_pred cEEEecceeee-C-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-cCCCce
Q psy2684 179 VLGLHDVTFGY-P-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGKV 237 (356)
Q Consensus 179 ~l~~~~l~~~~-~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p~~G~i 237 (356)
.+.+++...-. . ++..+++|+||+ |++++|+||||||||||+++++|+.. +..|.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 35666653211 0 235689999998 99999999999999999999999874 555543
No 182
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.67 E-value=2.4e-08 Score=106.30 Aligned_cols=78 Identities=13% Similarity=0.024 Sum_probs=61.1
Q ss_pred CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH-HHH---HHHHHHh-cCcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA-VIW---LDNYLQT-WKKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~-~~~---l~~~l~~-~~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
..+++|+++++ +++|++++.+|+++||||||+++|+.. ... +.+.+.+ .+.++|++|||.+++..+||++++++
T Consensus 848 ~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~ 926 (1022)
T 2o8b_B 848 GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL 926 (1022)
T ss_dssp --CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence 34667776664 999999999999999999999999875 332 3333333 37899999999999999999998875
Q ss_pred CCeEe
Q psy2684 80 MKKLF 84 (356)
Q Consensus 80 ~g~~~ 84 (356)
|++.
T Consensus 927 -g~~~ 930 (1022)
T 2o8b_B 927 -GHMA 930 (1022)
T ss_dssp -EEEE
T ss_pred -CeEE
Confidence 6665
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.66 E-value=5e-09 Score=92.49 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.1
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeec
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVN 243 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~ 243 (356)
-.+++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 45789999999999999999999999999986 67888777644
No 184
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.65 E-value=5.6e-09 Score=96.68 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=61.8
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------ChhHHhhhc
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH---------DQSFLNNIC 72 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH---------d~~~l~~~~ 72 (356)
+.+.+|| +||++||++|+.+|+ +|+|| ||++||+... +.++.+..+.|+|++|| .+..+..+.
T Consensus 200 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~ 273 (302)
T 3b9q_A 200 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSVVEELG 273 (302)
T ss_dssp HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHC
T ss_pred HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHC
Confidence 4466788 999999999999999 99999 9999998764 34555567899999999 556667778
Q ss_pred CEEEEEeCCeE
Q psy2684 73 TDIIHLDMKKL 83 (356)
Q Consensus 73 ~~i~~l~~g~~ 83 (356)
..|.++..|+.
T Consensus 274 ~pi~~i~~Ge~ 284 (302)
T 3b9q_A 274 IPVKFIGVGEA 284 (302)
T ss_dssp CCEEEEECSSS
T ss_pred CCEEEEeCCCC
Confidence 89999998864
No 185
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.65 E-value=7e-09 Score=92.52 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=44.1
Q ss_pred EEEecceeeeCCCcccccccee--eecCCCeEEEEcCCCCCcchhhhhhc--cccccCCCceeEeee
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNF--GLDMESRVALVGPNGIGKSTFLNLLK--GELTPNKGKVLLEKV 242 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl--~i~~ge~~~i~G~nGsGKSTll~~l~--gl~~p~~G~i~~~g~ 242 (356)
++++.++..++ .|+.+ + .|++|++++|+||||||||||+++++ |+..+..|.+++.+.
T Consensus 7 ~~~~~i~tg~~----~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 7 QPVRRVKSGIP----GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp -CCCEECCSCT----TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred cccceeecCCH----hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45566666553 34443 2 68999999999999999999999999 766777777777653
No 186
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.64 E-value=3e-10 Score=99.24 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHH---HHccCCCEEEEeCCCCCC----CHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684 9 FSGGWRIRVSLAR---ALFLEPTLLLLDEPTNHL----DLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH 77 (356)
Q Consensus 9 LSgGe~~r~~la~---~l~~~p~~llLDEPt~~L----D~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~ 77 (356)
++|.+..+-.... +|+.+|++++|||||++| |+..+..+.+++++ .+.|||+||||++++..+||+|++
T Consensus 121 ~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 121 LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 4455544444444 789999999999999998 67777777666554 357999999999999999999999
Q ss_pred Ee
Q psy2684 78 LD 79 (356)
Q Consensus 78 l~ 79 (356)
|.
T Consensus 201 l~ 202 (207)
T 1znw_A 201 GT 202 (207)
T ss_dssp --
T ss_pred hc
Confidence 84
No 187
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.61 E-value=2.8e-08 Score=88.62 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHH---HHHHhcCcEEEEEecChhHH---------hhhc
Q psy2684 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-----LNAVIWLD---NYLQTWKKTLLVVSHDQSFL---------NNIC 72 (356)
Q Consensus 10 SgGe~~r~~la~~l~~~p~~llLDEPt~~LD-----~~~~~~l~---~~l~~~~~tvi~vsHd~~~l---------~~~~ 72 (356)
+-++......+..-..+|++++|||||++|| +..+..+. +.+++.+.|||+|||+.+.+ ..+|
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 3455555555555678999999999999997 45544444 44455689999999999988 5778
Q ss_pred -CEEEEEeC
Q psy2684 73 -TDIIHLDM 80 (356)
Q Consensus 73 -~~i~~l~~ 80 (356)
|+|++|+.
T Consensus 199 aD~vi~l~~ 207 (251)
T 2ehv_A 199 ARGVIVLDL 207 (251)
T ss_dssp CSEEEEEEE
T ss_pred eeEEEEEee
Confidence 99999973
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.60 E-value=7.9e-09 Score=102.34 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=47.2
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
.+++++++.+.+|+.++|+||||||||||+++|+|+++|++|.|.++|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 47889999999999999999999999999999999999999999998865
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.59 E-value=1.6e-08 Score=97.48 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=40.6
Q ss_pred CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235 (356)
Q Consensus 178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G 235 (356)
.++.++|+++.| +++.+++++||+| +|+|+||||||||+++|+|...|..|
T Consensus 10 ~~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 468999999999 5678999999998 99999999999999999999875443
No 190
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.58 E-value=4.5e-08 Score=101.13 Aligned_cols=64 Identities=25% Similarity=0.129 Sum_probs=55.5
Q ss_pred CCcCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHH-HHHHHHHhcCcEEEEEecChhHHh
Q psy2684 6 TKEFSGGWRIRVSLARAL--FLEPTLLLLDEP---TNHLDLNAVI-WLDNYLQTWKKTLLVVSHDQSFLN 69 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~l--~~~p~~llLDEP---t~~LD~~~~~-~l~~~l~~~~~tvi~vsHd~~~l~ 69 (356)
...+|+|+++++.+++++ +.+|+++||||| |++||+.++. .+.+.+.+.+.++|++|||.++..
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 346899999999999999 999999999999 9999998864 477777777889999999988764
No 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.58 E-value=1.2e-08 Score=93.94 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=44.4
Q ss_pred ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC-ceeEee
Q psy2684 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLLEK 241 (356)
Q Consensus 193 ~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~~~g 241 (356)
..+|+++++.+.+|++++|+||||||||||++.++|...|.+| .|.+.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3579999999999999999999999999999999999999988 776654
No 192
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.56 E-value=1.4e-08 Score=84.89 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=51.0
Q ss_pred eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCC-c-----eEEEeecCcCCCCCCCCCHHHHH
Q psy2684 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-L-----RIGKFDQHSGEHLFPDDTPCEYL 309 (356)
Q Consensus 238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~-~-----~ig~~~Q~~~~~l~~~~t~~e~~ 309 (356)
.+++.++.+..++.++++||||||||||+++|+|.+ |.+|.+..... . ...|++|++. ++ .+|+.+++
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~--l~-~ltv~e~l 95 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD--LY-RLADPEEL 95 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE--CT-TCSCTTHH
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc--cc-cCCcHHHH
Confidence 345677788899999999999999999999999999 88887653211 0 0126888863 56 77776665
No 193
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.56 E-value=2e-08 Score=94.88 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------ChhHHhhhc
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH---------DQSFLNNIC 72 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH---------d~~~l~~~~ 72 (356)
+.+.+|| +||++||++|+.+|+ +|+|| ||++||+... +..+.+..+.|+|++|| .+..+....
T Consensus 257 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~--~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~ 330 (359)
T 2og2_A 257 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSVVEELG 330 (359)
T ss_dssp HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHC
T ss_pred hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH--HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhC
Confidence 4466788 999999999999999 99999 9999998765 34555567899999999 455666778
Q ss_pred CEEEEEeCCeE
Q psy2684 73 TDIIHLDMKKL 83 (356)
Q Consensus 73 ~~i~~l~~g~~ 83 (356)
..|.++..|..
T Consensus 331 ~pI~~ig~Ge~ 341 (359)
T 2og2_A 331 IPVKFIGVGEA 341 (359)
T ss_dssp CCEEEEECSSS
T ss_pred CCEEEEeCCCC
Confidence 89999988864
No 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=6.7e-09 Score=90.06 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=47.5
Q ss_pred ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce--eEeeeccc
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV--LLEKVNFG 245 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i--~~~g~~~~ 245 (356)
+|+++.+ +.....+..++...+|++++|+|||||||||++++|++.+. ..|.+ ++++.++.
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 3566655 45567788888899999999999999999999999999998 78988 88887663
No 195
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.55 E-value=1.4e-08 Score=96.85 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-CCceeEeeeccccCcCCeeeee
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGKVLLEKVNFGLDMESRVALV 255 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-~G~i~~~g~~~~~~~~~~ialv 255 (356)
+|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++.......++++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v 186 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIV 186 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEE
Confidence 566654 7899999999999999999999999999998 8999887765543223333433
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.53 E-value=2.1e-08 Score=93.76 Aligned_cols=44 Identities=23% Similarity=0.192 Sum_probs=40.8
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~ 245 (356)
...+|++++|+|||||||||+++.|+|+++|++|+|.+.+.++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 44789999999999999999999999999999999999998763
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.52 E-value=8.7e-09 Score=90.72 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=28.9
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
.|++|++++|+||||||||||+++|+|.+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999999999997665
No 198
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.52 E-value=1.2e-08 Score=107.23 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=35.1
Q ss_pred CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
+..+++|++|++.+|++++|+|||||||||||++++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45789999999999999999999999999999998764
No 199
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.52 E-value=1.7e-07 Score=85.47 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=47.1
Q ss_pred CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---H----HHHHHHHHhcCcEEEEEecChhHHh
Q psy2684 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTN--HLDLNA---V----IWLDNYLQTWKKTLLVVSHDQSFLN 69 (356)
Q Consensus 3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~--~LD~~~---~----~~l~~~l~~~~~tvi~vsHd~~~l~ 69 (356)
++++..||+|+.+++ ++++.+|+++||||||+ ++|... . ..|.++.++.+.|||+|+|+.....
T Consensus 113 ~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 113 GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 567899999997765 57788999999999999 899732 2 3344555567899999999987653
No 200
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.51 E-value=1.1e-08 Score=98.61 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=33.4
Q ss_pred cccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
-++++|+++.|+.++|+|+||||||||+++|++..+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 478999999999999999999999999999999843
No 201
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.51 E-value=8.7e-09 Score=97.94 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=42.4
Q ss_pred ccccceeeecC--CCeEEEEcCCCCCcchhhhhhccccccCC----CceeEe
Q psy2684 195 LLEKVNFGLDM--ESRVALVGPNGIGKSTFLNLLKGELTPNK----GKVLLE 240 (356)
Q Consensus 195 ~l~~~sl~i~~--ge~~~i~G~nGsGKSTll~~l~gl~~p~~----G~i~~~ 240 (356)
....|+++|.+ |++++|+||||||||||+++|+|++.|++ |.++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 35679999999 99999999999999999999999999999 888774
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.51 E-value=7.5e-08 Score=84.64 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=40.7
Q ss_pred cCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHhcCcEEEEEec----ChhHHhhhcCEEEEEeCC
Q psy2684 25 LEPTLLLLDEPTNHLDLN----------------AVIWLDNYLQTWKKTLLVVSH----DQSFLNNICTDIIHLDMK 81 (356)
Q Consensus 25 ~~p~~llLDEPt~~LD~~----------------~~~~l~~~l~~~~~tvi~vsH----d~~~l~~~~~~i~~l~~g 81 (356)
.+|++++|||||+.||+. -...|.++.++.+.|||+||| +-..+...||++++|++|
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 499999999999999983 123345555667899999999 444588999999999865
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.50 E-value=2.6e-07 Score=80.53 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=57.8
Q ss_pred CcCCHHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH------------HHHHHHHHHhcCcEEEEEecChh-----
Q psy2684 7 KEFSGGW--RIRVSLARALFLE-PTLLLLDEPTNHLDLNA------------VIWLDNYLQTWKKTLLVVSHDQS----- 66 (356)
Q Consensus 7 ~~LSgGe--~~r~~la~~l~~~-p~~llLDEPt~~LD~~~------------~~~l~~~l~~~~~tvi~vsHd~~----- 66 (356)
..+|+++ ++++..+++++.+ |+++|+||||+.+|+.. ...|.++.++++.|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3556664 5677788889886 99999999999999632 12255566667899999999865
Q ss_pred --------HHhhhcCEEEEEeCC
Q psy2684 67 --------FLNNICTDIIHLDMK 81 (356)
Q Consensus 67 --------~l~~~~~~i~~l~~g 81 (356)
.+...||.+++|+..
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 577899999999754
No 204
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.48 E-value=2.6e-08 Score=86.39 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=24.1
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
.+|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999886
No 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.47 E-value=2.1e-08 Score=87.56 Aligned_cols=42 Identities=31% Similarity=0.355 Sum_probs=36.6
Q ss_pred ecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeecc
Q psy2684 203 LDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNF 244 (356)
Q Consensus 203 i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~ 244 (356)
..+|++++|+||||||||||+++|+|++.|. .|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 4689999999999999999999999999964 67787777655
No 206
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.44 E-value=8.8e-08 Score=81.38 Aligned_cols=40 Identities=30% Similarity=0.269 Sum_probs=36.3
Q ss_pred ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237 (356)
Q Consensus 197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i 237 (356)
++++|++.+| +++|+|||||||||++++|.+++.+..|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 6788999998 999999999999999999999998877654
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.43 E-value=6.9e-08 Score=87.43 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=50.4
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 16 RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 16 r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
+++||++|..+|++||||||| |++++..+.+.. ..+.+||+++|+.+ +...|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 899999999999999999999 999877665554 45789999999988 557789988774
No 208
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.42 E-value=7.9e-08 Score=90.90 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=36.1
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccC-CCceeEeeecc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGKVLLEKVNF 244 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-~G~i~~~g~~~ 244 (356)
.+.+|++++|+||||||||||+++++|++.|+ .|.|...+.++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 67889999999999999999999999999998 56665544333
No 209
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.42 E-value=5.7e-08 Score=83.16 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999998
No 210
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.39 E-value=2.1e-07 Score=84.86 Aligned_cols=102 Identities=17% Similarity=0.064 Sum_probs=63.0
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeE
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~ 281 (356)
.+.+|++++|+||||||||||++.+++... .|.+.+ |.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~------------------------------------- 65 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGE------------------------------------- 65 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCC-------------------------------------
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCcc-------------------------------------
Confidence 478999999999999999999999998665 454422 1110
Q ss_pred eCCCceEEEeecCcCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHH
Q psy2684 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350 (356)
Q Consensus 282 ~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRva 350 (356)
....++.|+..+.. . ..+...+.. ...........+++.+++.+... +++..||+||.+++.
T Consensus 66 -~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~~~~~~~~l~l~~~~~-~~~~~ls~g~~~~i~ 128 (279)
T 1nlf_A 66 -LPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEERQAVADGLLIQPLIG-SLPNIMAPEWFDGLK 128 (279)
T ss_dssp -CCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHHHHHHHHHEEECCCTT-SCCCTTSHHHHHHHH
T ss_pred -CCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhhhhhccCceEEeecCC-CCcccCCHHHHHHHH
Confidence 00124666654321 0 011112211 12234445566788888876554 367899999988864
No 211
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.38 E-value=9e-08 Score=84.09 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=45.8
Q ss_pred Ccccccccee-eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 192 GKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 192 ~~~~l~~~sl-~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
+.+.|+++.+ .+++|++++|+||||||||||++.+++...+..|.+.+.+.+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4457888887 899999999999999999999999999999888988886543
No 212
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.38 E-value=1.5e-09 Score=100.31 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=53.8
Q ss_pred CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCeEeE
Q psy2684 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 85 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~~ 85 (356)
...|||||||| ||+|+.+|+||| |++||+.+...+.. +||+...+ ..||+| +|++|+++.
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~ 257 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQPF 257 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CCC
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEEE
Confidence 46899999999 999999999999 99999988766642 29998876 579999 999999985
Q ss_pred ecCCHHHH
Q psy2684 86 YKGNFTLF 93 (356)
Q Consensus 86 ~~g~~~~~ 93 (356)
.|+.+.+
T Consensus 258 -~g~~~el 264 (305)
T 2v9p_A 258 -NITDADW 264 (305)
T ss_dssp -CCCHHHH
T ss_pred -eCCHHHH
Confidence 5776654
No 213
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.34 E-value=2.3e-07 Score=86.41 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=35.9
Q ss_pred CeEEEEcCCCCCcchhhhhhcccc--------ccCCCceeEeeeccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGEL--------TPNKGKVLLEKVNFG 245 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~--------~p~~G~i~~~g~~~~ 245 (356)
++++|+|+||||||||++.|.|+. .|+.|+|.++|..+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 478999999999999999999997 889999999998775
No 214
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.28 E-value=2.5e-09 Score=94.25 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHH-----HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy2684 8 EFSGGWRIRVSL-----ARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ 52 (356)
Q Consensus 8 ~LSgGe~~r~~l-----a~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~ 52 (356)
+|||||+||++| +++|+.+|++++|||||+++|..+...+.+.+.
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~ 171 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRME 171 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 579999999999 899999999999999999999876555554443
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.27 E-value=8e-08 Score=86.48 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=37.6
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhc---cccccCCCcee--------Eeeecc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLK---GELTPNKGKVL--------LEKVNF 244 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~i~--------~~g~~~ 244 (356)
.+|++++|+|||||||||++++|+ |+..|++|.++ .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 689999999999999999999999 99999999998 666655
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.26 E-value=7.7e-08 Score=87.54 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=48.9
Q ss_pred CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHH
Q psy2684 5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68 (356)
Q Consensus 5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l 68 (356)
.+.+|||||+||+++|++++. +++||||+.+||+...+.+..+ .+. .+||+|.|..+.+
T Consensus 95 ~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L-~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 95 LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL-SKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH-HTT-SEEEEEETTGGGS
T ss_pred hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH-Hhc-CcEEEEEeccccC
Confidence 456899999999999999987 9999999999999886655554 444 8999998885544
No 217
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.25 E-value=3.2e-07 Score=79.35 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=33.4
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
++..+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 556789999999999999999999999987 8899988765
No 218
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.24 E-value=2.5e-07 Score=80.00 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.5
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G 235 (356)
++|.+|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977544
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.24 E-value=2.5e-07 Score=87.47 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEe
Q psy2684 18 SLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLD 79 (356)
Q Consensus 18 ~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~ 79 (356)
+||++|.++||+||||||| |.++.+.+.+.. ..+.+||+++|+.+.+ ..|||+++|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 888877766664 4488999999999988 6799998774
No 220
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.22 E-value=2.3e-07 Score=79.33 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~ 245 (356)
|++++|+|||||||||++++|++ |..|.+++++.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence 67899999999999999999987 67899999987653
No 221
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.21 E-value=9.6e-08 Score=88.89 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=47.2
Q ss_pred ecceeeeCCCccccccceeeecCCC------eEEEEcCCCCCcchhhhhhccccc--cCCCceeEeeec
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMES------RVALVGPNGIGKSTFLNLLKGELT--PNKGKVLLEKVN 243 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge------~~~i~G~nGsGKSTll~~l~gl~~--p~~G~i~~~g~~ 243 (356)
+.+++.| ++...+.+++..+..+. ++||+||||||||||+++|.+++. |+.|.+.+-+.+
T Consensus 64 rll~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 64 RLLSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 3455556 45567888888888777 899999999999999999999998 567876654433
No 222
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.20 E-value=2.5e-07 Score=84.35 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=42.1
Q ss_pred ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 193 ~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
..+++++++++++| ++|+||||||||||+++|+|...+ +.|.++|.++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 35789999999999 999999999999999999999877 6788887654
No 223
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.19 E-value=9.3e-07 Score=83.38 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------------HHH----HHHHHHhcCcEEEEEecChh
Q psy2684 10 SGGWRIRVSLARALF-------LEPTLLLLDEPTNHLDLNA------------VIW----LDNYLQTWKKTLLVVSHDQS 66 (356)
Q Consensus 10 SgGe~~r~~la~~l~-------~~p~~llLDEPt~~LD~~~------------~~~----l~~~l~~~~~tvi~vsHd~~ 66 (356)
|.++++++.+++.++ .+|++||+||||++||+.. ... |.++.++++.|||+++|+..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 578999999999999 6899999999999999851 222 34444557899999999987
Q ss_pred HHhhhcCEEEEEeCCeEe
Q psy2684 67 FLNNICTDIIHLDMKKLF 84 (356)
Q Consensus 67 ~l~~~~~~i~~l~~g~~~ 84 (356)
.....++.......|.+.
T Consensus 288 ~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 288 RPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp --------------CCCC
T ss_pred ccccccCCccccCCcceE
Confidence 665444444555556554
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.19 E-value=1.5e-07 Score=84.17 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCCCCcchhhhhhc---cccccCCCceeEeee
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLK---GELTPNKGKVLLEKV 242 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~i~~~g~ 242 (356)
++++++|+|||||||||++++|+ |+..|+.|+|.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 47899999999999999999999 999999999988764
No 225
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.17 E-value=1.1e-07 Score=85.39 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=50.2
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.+++++.+.| +...+++++++++++| +.|+||||+|||||++++++... .|.+.+++.++
T Consensus 26 ~~l~~l~~~~-~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 26 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHH-HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 4567777777 4456899999999999 99999999999999999999875 77888877543
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.15 E-value=1.2e-07 Score=86.31 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=50.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.+++++.+.| +...+++++++++++| ++|+||||+|||||+++|++... .|.|.+++.++
T Consensus 50 ~~l~~l~~~~-~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 50 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHH-HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 3456777777 4456899999999999 99999999999999999999885 78888887543
No 227
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.14 E-value=8e-07 Score=78.67 Aligned_cols=42 Identities=24% Similarity=0.194 Sum_probs=36.3
Q ss_pred ceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
-+.+..+|++++|.|+|||||||++++|++. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3445678999999999999999999999998 78899887654
No 228
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=6.3e-07 Score=83.46 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=45.0
Q ss_pred cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3678999999999999999999999999999999999999999988775
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=5.5e-07 Score=77.79 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=24.8
Q ss_pred ccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 193 ~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
...++++||++.+|.+++|+|++||||||+.+.|+..+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999765
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.13 E-value=5.8e-07 Score=76.44 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccccc-CCCcee
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTP-NKGKVL 238 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~i~ 238 (356)
+|++++|+||||||||||+++|.+.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999998864 344443
No 231
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.12 E-value=7.4e-07 Score=93.86 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=38.9
Q ss_pred CccccccceeeecCCCeEEEEcCCCCCcchhhhhh--------ccccccCCC
Q psy2684 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL--------KGELTPNKG 235 (356)
Q Consensus 192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l--------~gl~~p~~G 235 (356)
+..+++|++|++.+|++++|+|||||||||+++++ .|.+-|..+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 35689999999999999999999999999999999 777766554
No 232
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.12 E-value=1.3e-06 Score=90.87 Aligned_cols=74 Identities=14% Similarity=0.003 Sum_probs=48.8
Q ss_pred CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH---H-HHHHHHHHh-cCcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---V-IWLDNYLQT-WKKTLLVVSHDQSFLNNICTDIIHLDM 80 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~---~-~~l~~~l~~-~~~tvi~vsHd~~~l~~~~~~i~~l~~ 80 (356)
..++|+++++ ++.+..++.+|+++|||||++++|+.. + ..+.+.+.+ .+.++|++|||.++. .+||++..+.+
T Consensus 667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n 744 (800)
T 1wb9_A 667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVAN 744 (800)
T ss_dssp ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEE
T ss_pred hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEE
Confidence 4567777664 444445689999999999977777643 2 234444544 478999999998766 47776544444
Q ss_pred C
Q psy2684 81 K 81 (356)
Q Consensus 81 g 81 (356)
+
T Consensus 745 ~ 745 (800)
T 1wb9_A 745 V 745 (800)
T ss_dssp E
T ss_pred E
Confidence 3
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.11 E-value=7.1e-07 Score=77.28 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=38.2
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
...+|.+++|+|+|||||||++++|++.+.+..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3567899999999999999999999999999999998876654
No 234
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.10 E-value=4.5e-07 Score=76.87 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=33.8
Q ss_pred eeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCc
Q psy2684 200 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236 (356)
Q Consensus 200 sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~ 236 (356)
+|++.+|+.++|+||||+|||||++++++.+.|..|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5677889999999999999999999999999888774
No 235
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.09 E-value=7.4e-07 Score=84.05 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=43.0
Q ss_pred ccccccc-eeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCC----Cc-eeEeeec
Q psy2684 193 KVLLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNK----GK-VLLEKVN 243 (356)
Q Consensus 193 ~~~l~~~-sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~----G~-i~~~g~~ 243 (356)
...|+.+ ++.|++|++++|+||||||||||++.+++.. +|+. |. |++++.+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3456665 6899999999999999999999999999998 7776 57 7887654
No 236
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.09 E-value=3.9e-08 Score=91.43 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=45.2
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHH
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l 68 (356)
..+.+|||||+||+++|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+|+.+..
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~ 231 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDI 231 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHH
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHH
Confidence 5577999999999999999999999999999999998621 11222223456677776553
No 237
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.09 E-value=9.5e-07 Score=91.80 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=35.7
Q ss_pred CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
+..+++|++|+ .+|++++|+||||||||||+++++|+..
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 45689999999 9999999999999999999999999753
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.09 E-value=3.2e-07 Score=89.65 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=52.1
Q ss_pred eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeC-----------------CCceEEEeecCcCCCCCCC
Q psy2684 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-----------------PRLRIGKFDQHSGEHLFPD 302 (356)
Q Consensus 240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~-----------------~~~~ig~~~Q~~~~~l~~~ 302 (356)
++.++.+..++.++++|+|||||||++++|+|.+.+..|.+... .+.+++|++|+.. +++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHH
Confidence 34566677889999999999999999999999988877776542 0235899999753 4555
Q ss_pred CCHHHHHH
Q psy2684 303 DTPCEYLM 310 (356)
Q Consensus 303 ~t~~e~~~ 310 (356)
.++.+++.
T Consensus 362 ~tV~e~l~ 369 (503)
T 2yhs_A 362 SVIFDAIQ 369 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.08 E-value=1.3e-06 Score=72.12 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccCCC--ceeEeeecc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKG--KVLLEKVNF 244 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G--~i~~~g~~~ 244 (356)
+|+.++|+||||+|||||++++++.+.+ +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 8999999999999999999999999987 57 667766544
No 240
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.06 E-value=2.3e-06 Score=80.86 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=38.6
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhcc-------------ccccCCCceeEee
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-------------ELTPNKGKVLLEK 241 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g-------------l~~p~~G~i~~~g 241 (356)
..+++++|++.+| +++|+|||||||||++++|.+ ++...++...+.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~g~~R~~~~~~lI~~g~~~~~V~~ 74 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRA 74 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHSCCCCSSGGGGBCTTCSCEEEEE
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhccCCCCCCCHHHHhccCCCcEEEEE
Confidence 3578899999999 999999999999999999997 5555555555543
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.06 E-value=1.2e-06 Score=81.06 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=42.3
Q ss_pred cceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.++|+..+|++++|+|+|||||||++..|++.+.+..|+|.+.+.|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45667788999999999999999999999999999999999987764
No 242
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.04 E-value=2.1e-07 Score=87.57 Aligned_cols=63 Identities=24% Similarity=0.155 Sum_probs=52.3
Q ss_pred EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
+.+++.+.| +...+++++++.+.++.+++|+|++|+|||||++.|++.+.+..+++.+-+.+.
T Consensus 32 e~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 32 ESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred hcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 344555555 345688999999999999999999999999999999999999888888766554
No 243
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.03 E-value=1e-06 Score=83.28 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=48.8
Q ss_pred cEEEecceeeeCCCccccc--------------cceeeecCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 179 VLGLHDVTFGYPGGKVLLE--------------KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~--------------~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
-+.++|+++.|+..+..++ |+++.|.+|++++|+||+|+|||||++.|++....
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3678999999987777888 89999999999999999999999999999987643
No 244
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.02 E-value=2.5e-07 Score=87.22 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEecChhHHhhhcC
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW-----KK-----TLLVVSHDQSFLNNICT 73 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~l~~~~~ 73 (356)
.++..||+|| |++++| +.+|++ |++||+.....+.+++.+. +. ||+++|||++ ..+||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d 234 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD 234 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence 4577899999 899999 578877 9999999999999999865 23 8999999998 67899
Q ss_pred EEEEEeCCeEeE
Q psy2684 74 DIIHLDMKKLFY 85 (356)
Q Consensus 74 ~i~~l~~g~~~~ 85 (356)
++++|.+|+++.
T Consensus 235 ~v~~i~dG~Ivl 246 (347)
T 2obl_A 235 EVRSILDGHIVL 246 (347)
T ss_dssp HHHHHCSEEEEB
T ss_pred heEEeeCcEEEE
Confidence 999999999975
No 245
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.02 E-value=3.7e-07 Score=88.65 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC------c------EEEEEecChhHHhhhcC
Q psy2684 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK------K------TLLVVSHDQSFLNNICT 73 (356)
Q Consensus 6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~l~~~~~ 73 (356)
+..||+|| ||++|| +.+|++ |++||+.....+.+++.+.. + ||+++|||++ ..+||
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad 323 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIAD 323 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhc
Confidence 45789999 999999 888888 99999999999999887652 3 8999999998 67899
Q ss_pred EEEEEeCCeEeE
Q psy2684 74 DIIHLDMKKLFY 85 (356)
Q Consensus 74 ~i~~l~~g~~~~ 85 (356)
++++|.+|+++.
T Consensus 324 ~v~~l~dG~Ivl 335 (438)
T 2dpy_A 324 SARAILDGHIVL 335 (438)
T ss_dssp HHHHHSSEEEEE
T ss_pred eEEEEeCcEEEE
Confidence 999999999875
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.01 E-value=9.7e-07 Score=77.71 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCC--CcceeEeC---C----CceEEEeecCc
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKS---P----RLRIGKFDQHS 295 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~--~~g~~~~~---~----~~~ig~~~Q~~ 295 (356)
...++.++++||||||||||+++|+|...| ..+.+... + ...++|+||++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 456888999999999999999999998875 44544321 1 23478999875
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.99 E-value=1.7e-06 Score=74.67 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.6
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999998875
No 248
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.99 E-value=2.1e-06 Score=84.01 Aligned_cols=43 Identities=30% Similarity=0.311 Sum_probs=38.7
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 282 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~ 282 (356)
+++.++.+.. +.++++||||||||||+++|+|.+.|..|.+..
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 5678888888 999999999999999999999999999888743
No 249
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.97 E-value=3e-06 Score=82.08 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=37.8
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~ 234 (356)
++++|+ ..| ++. . ++++.+|++++|+||||||||||+++|+++..|.+
T Consensus 7 l~~~~~-~~~-~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSY-RGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSC-CSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEE-CCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 678888 677 332 1 35567899999999999999999999999988865
No 250
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.97 E-value=2.8e-06 Score=75.06 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=35.1
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhcc--cccc-----CCCceeEeeec
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKG--ELTP-----NKGKVLLEKVN 243 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~g--l~~p-----~~G~i~~~g~~ 243 (356)
-|++|++++|+||||||||||++.+++ ..+| ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 478999999999999999999999999 5655 56677777543
No 251
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.94 E-value=1.9e-07 Score=86.39 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHHhcCcEEEEEecChh
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNH-LDLNAVIWLDNYLQTWKKTLLVVSHDQS 66 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~-LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 66 (356)
+++.++|||+|||+.+|++++ +|++||||++ ||+...+.+..+-.+.+.++|+.+||+.
T Consensus 109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 456789999999999988886 9999999986 9998865554443334567888889863
No 252
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.94 E-value=1.8e-06 Score=82.12 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=38.1
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~ 239 (356)
.+++++++.+++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 5889999999999999999999999999999999853 566544
No 253
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.93 E-value=2.7e-06 Score=71.56 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.3
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.+|++++|+|+|||||||+++.|++.+ |.+++++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468899999999999999999999876 7888887665
No 254
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.90 E-value=1.4e-06 Score=86.82 Aligned_cols=43 Identities=28% Similarity=0.231 Sum_probs=38.1
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCC-cee-Eeeecc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVL-LEKVNF 244 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~-~~g~~~ 244 (356)
.+.+|++++|+|+||||||||+++|++.+.|++| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 6789999999999999999999999999999987 674 776554
No 255
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.89 E-value=3.6e-06 Score=81.01 Aligned_cols=66 Identities=20% Similarity=0.048 Sum_probs=43.2
Q ss_pred EeeeccccCcCCe--eeeecCCCCchhhHHHHHhCCCCCCcceeE----eCCCceEEEeecCcCCCCCCCCCHHH
Q psy2684 239 LEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCE 307 (356)
Q Consensus 239 ~~g~~~~~~~~~~--ialvG~nG~GKsTll~~l~g~~~~~~g~~~----~~~~~~ig~~~Q~~~~~l~~~~t~~e 307 (356)
++++++.+..++. ++++|+||+|||||+++|+|..-... .+. ......++|++|++. +++..|+.+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~-~~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE-PATHTQPGVQLQSNTYDLQESN--VRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEEEEEEEEC----CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCC-cCCCCCccceEeeEEEEeecCc--cccccchhh
Confidence 6778888899999 99999999999999999999742110 111 011236899999753 333444444
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=4.2e-06 Score=72.76 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=27.3
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
++|++++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 257
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.84 E-value=4.1e-06 Score=79.94 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=35.8
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhcc------------ccccCCCceeEee
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKG------------ELTPNKGKVLLEK 241 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~g------------l~~p~~G~i~~~g 241 (356)
.+..|.+++|+|+||+|||||+++|+| .+.|+.|.+.+.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 356899999999999999999999999 6678999998876
No 258
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.83 E-value=5.3e-06 Score=74.02 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=25.3
Q ss_pred CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
+...+++.++.+..+..+|++|+|||||||++++|+|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678889999999999999999999999999999854
No 259
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.83 E-value=6.5e-06 Score=72.61 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=21.8
Q ss_pred eeeccccCcCCeeeeecCCCCchhhHHHHHh-CCC
Q psy2684 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GEL 273 (356)
Q Consensus 240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~-g~~ 273 (356)
++.++.+..++.++++|||||||||++++|+ +..
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567778889999999999999999999999 887
No 260
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.82 E-value=3.6e-06 Score=71.92 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=30.3
Q ss_pred eEEEEcCCCCCcchhhhhhcccccc-----------CCCceeEeeecc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTP-----------NKGKVLLEKVNF 244 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p-----------~~G~i~~~g~~~ 244 (356)
+++|+|+||||||||++.++|...+ ..|.|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999998765 456677766543
No 261
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.80 E-value=7.5e-07 Score=81.81 Aligned_cols=96 Identities=15% Similarity=0.017 Sum_probs=56.4
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---------cC----C
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---------FN----L 315 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---------~~----~ 315 (356)
...++++|++||||||+++.|.+.+.+.... ...+.+++|+.. ++ ..+..+++... .+ .
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~-----~~~~~iv~~D~f--~~-~~~~~~~l~~~~~~~~l~~~~g~p~a~ 102 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG-----EKSIGYASIDDF--YL-THEDQLKLNEQFKNNKLLQGRGLPGTH 102 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGG-----GSCEEEEEGGGG--BC-CHHHHHHHHHHTTTCGGGSSSCSTTSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCC-----CceEEEeccccc--cC-ChHHHHHHhccccccchhhhccCcchh
Confidence 4568999999999999999999876542100 123445599863 33 33445544321 01 1
Q ss_pred CHHHHHHHHhhcCCC------Cc-cccCCCCCCChHHHHHHHHH
Q psy2684 316 PYEKSRRQLGMFGLP------SY-AHTIPIRDLSGGQKARVALA 352 (356)
Q Consensus 316 ~~~~~~~~L~~~~l~------~~-~~~~~~~~LSGGqkqRvalA 352 (356)
......+.+..+.-. .. .....-..+||||+||+++|
T Consensus 103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a 146 (290)
T 1odf_A 103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTG 146 (290)
T ss_dssp CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSC
T ss_pred HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccc
Confidence 234455666665432 10 00112268999999998775
No 262
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.78 E-value=2.6e-06 Score=79.56 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=45.9
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeC---C--------------CceEEEeecCcCCCCCCCCCHHHHH
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS---P--------------RLRIGKFDQHSGEHLFPDDTPCEYL 309 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~---~--------------~~~ig~~~Q~~~~~l~~~~t~~e~~ 309 (356)
..++.++++|+|||||||+++.|+|.+.+..|.+... . +..+.|++|.. .+++..++.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHHH
Confidence 4567899999999999999999999998888876431 0 12355888865 356666777765
Q ss_pred H
Q psy2684 310 M 310 (356)
Q Consensus 310 ~ 310 (356)
.
T Consensus 205 ~ 205 (328)
T 3e70_C 205 Q 205 (328)
T ss_dssp H
T ss_pred H
Confidence 4
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.78 E-value=5.9e-06 Score=71.77 Aligned_cols=41 Identities=34% Similarity=0.374 Sum_probs=33.0
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~ 295 (356)
..++.++++|+||||||||+++|+|.+.+. | ..+|+++++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCC
Confidence 356789999999999999999999987653 2 2478888875
No 264
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.76 E-value=2.2e-06 Score=80.38 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=44.5
Q ss_pred EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe---------------CCCceEEEeecCcC
Q psy2684 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---------------SPRLRIGKFDQHSG 296 (356)
Q Consensus 239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~---------------~~~~~ig~~~Q~~~ 296 (356)
+++.++.+..++.++++|+||||||||+++++|.+.+..|.+.. ..+.+++|++|++.
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 45566667788999999999999999999999887776666531 12346888999764
No 265
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.75 E-value=7e-06 Score=71.31 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=36.6
Q ss_pred cccccccee-eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 193 KVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 193 ~~~l~~~sl-~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
.+.|+.+.. .+++|++++|+||||||||||++.+++ .+..+.++++.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~ 53 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT 53 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC
Confidence 346677665 689999999999999999999999999 44444455553
No 266
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.74 E-value=4.7e-05 Score=67.05 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=38.1
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HH----HHHHHHHhcCcEEEEEecChhHH-------------------h
Q psy2684 25 LEPTLLLLDEPTNHLDLN-------A-----VI----WLDNYLQTWKKTLLVVSHDQSFL-------------------N 69 (356)
Q Consensus 25 ~~p~~llLDEPt~~LD~~-------~-----~~----~l~~~l~~~~~tvi~vsHd~~~l-------------------~ 69 (356)
.+|+++++|||++.+|+. + .. .|.++.++++.|||+++|..... .
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999974 2 12 23445556689999999976543 3
Q ss_pred hhcCEEEEEeCC
Q psy2684 70 NICTDIIHLDMK 81 (356)
Q Consensus 70 ~~~~~i~~l~~g 81 (356)
.+||++++|+.+
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 389999999864
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.71 E-value=1.1e-05 Score=74.21 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=36.2
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccccccCCC-ceeEeeecc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLLEKVNF 244 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~~~g~~~ 244 (356)
.+|++++|+|+||+||||++..|++.+.+..| +|.+-+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 47899999999999999999999999999888 787766554
No 268
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.68 E-value=1.2e-05 Score=76.14 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=38.5
Q ss_pred eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeC
Q psy2684 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283 (356)
Q Consensus 240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~ 283 (356)
++.++.+..++.++++|+|||||||++++|+|.+.+..|.+...
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 55667778899999999999999999999999999988877553
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.68 E-value=1.3e-05 Score=68.83 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=24.9
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
...++.++++|||||||||++++|+|...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578899999999999999999999853
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.68 E-value=9.8e-06 Score=78.12 Aligned_cols=57 Identities=19% Similarity=0.101 Sum_probs=48.3
Q ss_pred ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
+++++.|+ ... ++++|+ ++++++++|+|||||||++..|++.+.+..++|.+.+.|+
T Consensus 80 ~~L~~~~~-~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 80 EALKEALG-GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHHTT-SSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HHHHHHhC-CCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 46777773 322 678887 8999999999999999999999999999999999987765
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.67 E-value=1.1e-05 Score=67.39 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
.|.+++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999999998654
No 272
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.67 E-value=6.3e-06 Score=83.37 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=51.4
Q ss_pred ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC-CceeEeeecc
Q psy2684 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-GKVLLEKVNF 244 (356)
Q Consensus 183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~-G~i~~~g~~~ 244 (356)
++++..| +...+++++++.+..|+.+.|+||||+|||||+++|++++.+.. |.+.+.+...
T Consensus 38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 4455556 56678999999999999999999999999999999999999887 6677766544
No 273
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.67 E-value=5.4e-06 Score=73.25 Aligned_cols=31 Identities=35% Similarity=0.411 Sum_probs=27.8
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~ 280 (356)
+.++++|||||||||++++|+|.+.|..|.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 5679999999999999999999998887754
No 274
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.66 E-value=2.5e-05 Score=65.96 Aligned_cols=82 Identities=15% Similarity=0.021 Sum_probs=50.2
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCccee----------Ee-------CCCceEEEeecCcCCCCCCC---CCHHHHHH
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGEL----------RK-------SPRLRIGKFDQHSGEHLFPD---DTPCEYLM 310 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~----------~~-------~~~~~ig~~~Q~~~~~l~~~---~t~~e~~~ 310 (356)
..+++|+|||||||++++|.+.+.+..+.. .. .....|.+++|++...+.+. .++...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~i~r~~~ 107 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVY 107 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSSSEEEEEEEEC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCCcEEEEEEEEE
Confidence 678999999999999999988765543321 11 12357889999875443321 11111000
Q ss_pred ----H---h--cCCCHHHHHHHHhhcCCCCc
Q psy2684 311 ----K---L--FNLPYEKSRRQLGMFGLPSY 332 (356)
Q Consensus 311 ----~---~--~~~~~~~~~~~L~~~~l~~~ 332 (356)
. . ......++.+++..+++...
T Consensus 108 ~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~ 138 (182)
T 3kta_A 108 PDGRSSYWLNGRRATRSEILDILTAAMISPD 138 (182)
T ss_dssp TTSCEEEEETTEEECHHHHHHHHHHTTCCTT
T ss_pred eCCcEEEEECCeEcCHHHHHHHHHHcCCCCC
Confidence 0 0 01245677888999998753
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=1.1e-05 Score=74.20 Aligned_cols=59 Identities=24% Similarity=0.130 Sum_probs=48.7
Q ss_pred EecceeeeCCCcccccc-ceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 182 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 182 ~~~l~~~~~~~~~~l~~-~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.+++...|+ +.. .+ ++|+.. +.+++++|+||+||||++..|++.+.+..++|.+-+.+.
T Consensus 77 ~~~l~~~~~-~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 77 YDELSNLFG-GDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHTT-CSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHhc-ccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 456666673 322 56 888876 999999999999999999999999999999999887764
No 276
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.61 E-value=1.9e-05 Score=67.30 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.8
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
+.++++|||||||||++++|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999876
No 277
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.60 E-value=1.2e-05 Score=68.96 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=28.7
Q ss_pred eEEEEcCCCCCcchhhhhhccccc-----cC------CCceeEeeecc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT-----PN------KGKVLLEKVNF 244 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~-----p~------~G~i~~~g~~~ 244 (356)
.++|+|+||||||||++.++|... |+ .|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 579999999999999999999853 33 45666666543
No 278
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.60 E-value=2.3e-05 Score=75.00 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.2
Q ss_pred eecCCCeEEEEcCCCCCcchhhh--hhccccccCCC-----ceeEeee
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLN--LLKGELTPNKG-----KVLLEKV 242 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~--~l~gl~~p~~G-----~i~~~g~ 242 (356)
-|++|+++.|+||||||||||++ ++.+..+++.| .+++++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 58899999999999999999999 45677777544 6677654
No 279
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.59 E-value=1.9e-05 Score=74.34 Aligned_cols=41 Identities=37% Similarity=0.498 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~ 245 (356)
.+.+++|+|++|||||||++.|.|.+.+..|+|.+-+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 45679999999999999999999999999999988776653
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.58 E-value=1.8e-05 Score=68.17 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=22.9
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
.++.++++|||||||||++++|+|...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999998764
No 281
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.58 E-value=8e-06 Score=71.52 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCCcchhhhhhcccc---ccCCCceeE
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGEL---TPNKGKVLL 239 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~---~p~~G~i~~ 239 (356)
+.+++|+||+||||||++++|++.+ .++.|.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999877 788888876
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.58 E-value=2e-05 Score=67.76 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.6
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
+..++.++++|+|||||||+++.|++...+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~ 34 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY 34 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCe
Confidence 34577899999999999999999999885543
No 283
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.57 E-value=2e-05 Score=67.82 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCCcCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2684 4 KSTKEFSGGWRIR-VSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW 54 (356)
Q Consensus 4 ~~~~~LSgGe~~r-~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~ 54 (356)
..+..+|+||+|+ +..+++++.+|.++++||||+++|..+++.+.+.+.++
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 3467899999999 88999999999999999999999999999888887653
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.57 E-value=4.5e-05 Score=64.74 Aligned_cols=104 Identities=14% Similarity=0.025 Sum_probs=55.5
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCC---------CceEEEeecCcCCCCCCCCCHHHHHHHhc---
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--- 313 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~---------~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--- 313 (356)
+..++.++++|+|||||||++++|++. +..|.+.... ...++|++|... +..++.+++....
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHHH
Confidence 345677899999999999999999997 4445443211 112455555431 1233444432110
Q ss_pred --CCCHHHHHHHHhhcCCCCccc-cCCCCCCChHHHHHHHHHHHc
Q psy2684 314 --NLPYEKSRRQLGMFGLPSYAH-TIPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 314 --~~~~~~~~~~L~~~~l~~~~~-~~~~~~LSGGqkqRvalA~~~ 355 (356)
......+..++..+++..... ..++..+|+|++|++++||++
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~ 124 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL 124 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHH
T ss_pred hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH
Confidence 000000000011111211110 224578999999999999986
No 285
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.55 E-value=3.9e-06 Score=83.81 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=49.9
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
..++++...| ....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.+.
T Consensus 84 ~G~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred ccHHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3456666666 3445788899988 89999999999999999999999999888888877663
No 286
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.55 E-value=1.6e-05 Score=75.22 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=32.8
Q ss_pred eeccccCc--CCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 241 KVNFGLDM--ESRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 241 g~~~~~~~--~~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
.+++.+.. +++++++|+||||||||+++|+|.+.+..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45566667 89999999999999999999999999877
No 287
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.54 E-value=1.7e-05 Score=66.97 Aligned_cols=40 Identities=30% Similarity=0.249 Sum_probs=32.6
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccccccCCC--ceeEeeecc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG--KVLLEKVNF 244 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G--~i~~~g~~~ 244 (356)
.+|++++|+|++||||||+++.|++.+.+ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 36889999999999999999999998877 56 555666544
No 288
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.52 E-value=3.2e-05 Score=63.62 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=23.5
Q ss_pred ceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++++.+| +.+|+|||||||||++.+|.-.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 34444444 8999999999999999998743
No 289
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.48 E-value=3.4e-05 Score=72.84 Aligned_cols=42 Identities=31% Similarity=0.348 Sum_probs=32.7
Q ss_pred cccccceeeecCCCeEEEEcCCCCCcchhhhhhcc--ccccCCCcee
Q psy2684 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVL 238 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g--l~~p~~G~i~ 238 (356)
.+|++++++++ .++|+|++|||||||++.|.| ++++..|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 57889999998 899999999999999999999 5566667654
No 290
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.48 E-value=2.1e-05 Score=67.45 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=31.1
Q ss_pred eeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 187 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 187 ~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
+.|++-..+++++||..+.. .++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 45654456889999988777 579999999999999999987
No 291
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.46 E-value=1.7e-05 Score=78.03 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=48.0
Q ss_pred EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
.+++++...| .....++++++.+++| +.|+||||+|||||++++++... .+.+.+++.++
T Consensus 41 ~~l~~lv~~l-~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 41 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp HHHHHHHHHH-HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred HHHHHHHHHh-hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 4556666556 3445889999999999 99999999999999999999874 67777777554
No 292
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=6.1e-05 Score=69.33 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=27.6
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 282 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~ 282 (356)
..++.++++|+||+|||||+++|+|...|..|.+..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 356788999999999999999999999999888764
No 293
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.45 E-value=3.9e-05 Score=67.74 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=32.1
Q ss_pred cccceeeec---CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe
Q psy2684 196 LEKVNFGLD---MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240 (356)
Q Consensus 196 l~~~sl~i~---~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~ 240 (356)
+.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 455555554 8999999999999999999999999988 6666543
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.44 E-value=3.4e-05 Score=66.62 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=27.7
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
-++.+|.+++|+|++||||||+++.|++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999999763
No 295
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.41 E-value=3.8e-05 Score=64.76 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=35.7
Q ss_pred ccCCCEEEEeCCCC-CCCHHHHHHHHHHHHh---cCcEEEEEecChh
Q psy2684 24 FLEPTLLLLDEPTN-HLDLNAVIWLDNYLQT---WKKTLLVVSHDQS 66 (356)
Q Consensus 24 ~~~p~~llLDEPt~-~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~ 66 (356)
+.+|++||||||++ ++|+.....|.+++.. .+.++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45899999999985 8999998888877764 3679999999753
No 296
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.40 E-value=2e-05 Score=78.15 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=30.7
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
.+++++|++.+| +.+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 567889999999 9999999999999999999655
No 297
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.39 E-value=5.2e-05 Score=70.01 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=30.3
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCC--CCcceeEe
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELT--PNKGELRK 282 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~--~~~g~~~~ 282 (356)
..++.+|++|+|||||||++++|+|.+. |..|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4456799999999999999999999877 77776643
No 298
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.39 E-value=1.6e-05 Score=69.10 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=37.9
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhccccccCCC--ceeEeeecc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--KVLLEKVNF 244 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G--~i~~~g~~~ 244 (356)
+.+.+|.++.|+|++||||||+.+.|++.+.|..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988888 777776544
No 299
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.37 E-value=4.5e-05 Score=72.39 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684 16 RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHL 78 (356)
Q Consensus 16 r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l 78 (356)
+.+|+++|..+|+++++|||+ |+++...+.+.. ..+.+||.++|+.+ +...|||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 569999999999999999999 888765544443 45779999999966 66778888665
No 300
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=2e-05 Score=73.73 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=46.6
Q ss_pred cceeeeCCCccccccceeeecCCCe--EEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 184 DVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 184 ~l~~~~~~~~~~l~~~sl~i~~ge~--~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
+++..+ +...+++.++..|..|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.
T Consensus 23 ~~~~~~-g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 23 TLDEVY-GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp SGGGCC-SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred cHHHhc-CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 344445 455688999999999998 9999999999999999999998877666555443
No 301
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.35 E-value=0.0001 Score=69.35 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=28.4
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCC-CCcceeEe
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRK 282 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~-~~~g~~~~ 282 (356)
.++.++++|+||+|||||+++|+|... +..|.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 467899999999999999999999998 88887643
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.35 E-value=1.7e-07 Score=81.62 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=50.8
Q ss_pred CCCCcCCHHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHHh----cCcEEEEEecCh
Q psy2684 4 KSTKEFSGGW----RIRVSLARALFLEPTLLLLDEPTNH-------LDLNAVIWLDNYLQT----WKKTLLVVSHDQ 65 (356)
Q Consensus 4 ~~~~~LSgGe----~~r~~la~~l~~~p~~llLDEPt~~-------LD~~~~~~l~~~l~~----~~~tvi~vsHd~ 65 (356)
+++..+|+|+ +||+++|++++.+|.++++||||++ ||+.....+.+.+.+ .+.|+++++|+.
T Consensus 85 ~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 85 MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4677899996 4688899999999999999999999 898776666655543 377999999984
No 303
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=5.3e-05 Score=70.86 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=27.5
Q ss_pred eEEEEcCCCCCcchhhhhhcc-ccccCCCceeEeeeccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKG-ELTPNKGKVLLEKVNFG 245 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~g-l~~p~~G~i~~~g~~~~ 245 (356)
.+.|.||||+||||+++++++ ++.|+.|.+.++|.++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 489999999999999999999 88999999998876553
No 304
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.34 E-value=2.8e-05 Score=73.58 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=37.0
Q ss_pred cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235 (356)
Q Consensus 179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G 235 (356)
.+.+.+++..| +.+.+.++++|.| +|+|++|+|||||++.|.+...+..+
T Consensus 17 ~v~~~~l~~~~-~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHH-HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHh-CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 57889999988 5667889999876 99999999999999999887655444
No 305
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.33 E-value=7.3e-05 Score=65.92 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=32.7
Q ss_pred cccccc-eeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684 194 VLLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239 (356)
Q Consensus 194 ~~l~~~-sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~ 239 (356)
+.|+.+ .--+++|+++.|+||||||||||+..++....+..+.+.+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~ 56 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIY 56 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 456665 5678999999999999999999966554433333444444
No 306
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.32 E-value=5.4e-05 Score=67.32 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=40.7
Q ss_pred CCeeeeecCCCCchhhHHHHHh---CCCCCCcceeEeCC-------CceEEEeecCcCCCCCCCCCHHHHHH
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLK---GELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLM 310 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~---g~~~~~~g~~~~~~-------~~~ig~~~Q~~~~~l~~~~t~~e~~~ 310 (356)
.+.++++|+|||||||++++|+ |...++.|.+.... ...+++++|+. .+++..++.+++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~ 96 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMM 96 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHH
Confidence 4689999999999999999999 99888776653210 11233445553 3455556666553
No 307
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.26 E-value=6.7e-05 Score=74.13 Aligned_cols=84 Identities=25% Similarity=0.299 Sum_probs=54.1
Q ss_pred ceeeecCCCeEEEE-cCC--CCCcchhhhhhccccc-c----CCCce---eEeeeccccCcCCeeeeecCCCCchhhHHH
Q psy2684 199 VNFGLDMESRVALV-GPN--GIGKSTFLNLLKGELT-P----NKGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLN 267 (356)
Q Consensus 199 ~sl~i~~ge~~~i~-G~n--GsGKSTll~~l~gl~~-p----~~G~i---~~~g~~~~~~~~~~ialvG~nG~GKsTll~ 267 (356)
++..++.|.++.++ ||. --|-+-.+|.+...-. + ..|.+ .+++.++.+..++.++++|+|||||||+++
T Consensus 199 ~~~~lp~g~Rv~~~~~~~~~~~G~~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 199 VDATLPDGSRLQATFGTEVTPRGSSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp EEEEETTTEEEEEECSSSSCTTCSEEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHH
T ss_pred eeeecCCCeEEEEEECCCccCCCCEEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 34567788888777 543 2244444444322100 0 11221 123344556678889999999999999999
Q ss_pred HHhCCCCCCcceeEe
Q psy2684 268 LLKGELTPNKGELRK 282 (356)
Q Consensus 268 ~l~g~~~~~~g~~~~ 282 (356)
+++|.+.+..+.+..
T Consensus 279 aL~~~i~~~~giiti 293 (511)
T 2oap_1 279 AIMMFIPPDAKVVSI 293 (511)
T ss_dssp HHGGGSCTTCCEEEE
T ss_pred HHHhhCCCCCCEEEE
Confidence 999999998887653
No 308
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=9.9e-05 Score=62.39 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.8
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
.++.++++|||||||||+++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998765
No 309
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.25 E-value=5.2e-05 Score=69.94 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=23.4
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 282 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~ 282 (356)
+..++.++++|+||+|||||+++|+|...+..|.+..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 3456789999999999999999999999888887753
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.23 E-value=0.00012 Score=62.92 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=25.4
Q ss_pred eEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
+++|+|+|||||||+.++|+++ |..+++.-+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~ 34 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV 34 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH
Confidence 5899999999999999999984 666665433
No 311
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.23 E-value=0.00016 Score=66.54 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=28.1
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 282 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~ 282 (356)
++.++++|+||+|||||+++|+ ...+..|.+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 4567899999999999999999 99998888765
No 312
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.21 E-value=0.0001 Score=68.02 Aligned_cols=79 Identities=20% Similarity=0.143 Sum_probs=50.8
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHh
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 325 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~ 325 (356)
...++.++++|+||+||||++..+++.+.+..+ ++.++..+... .... +....+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~--------kV~lv~~D~~r-----~~a~-----------eqL~~~~~ 156 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK--------SVVLAAADTFR-----AAAI-----------EQLKIWGE 156 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--------CEEEEEECTTC-----HHHH-----------HHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC--------EEEEEcccccc-----HHHH-----------HHHHHHHH
Confidence 345678999999999999999999987765433 35566655310 0011 12334555
Q ss_pred hcCCCCccccCCCCCCChHHHHHH---HHHHH
Q psy2684 326 MFGLPSYAHTIPIRDLSGGQKARV---ALAEL 354 (356)
Q Consensus 326 ~~~l~~~~~~~~~~~LSGGqkqRv---alA~~ 354 (356)
.++++- +..+|||+.+++ +|+++
T Consensus 157 ~~gl~~------~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 157 RVGATV------ISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp HHTCEE------ECCSTTCCHHHHHHHHHHHH
T ss_pred HcCCcE------EecCCccCHHHHHHHHHHHH
Confidence 666532 235789999998 66654
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.21 E-value=9.3e-05 Score=62.68 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=34.6
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee-Eeeec
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL-LEKVN 243 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~-~~g~~ 243 (356)
...+|.++.|+|++||||||+.+.|+..+.+..+.+. +++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 3457889999999999999999999999988777764 45433
No 314
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.19 E-value=0.00013 Score=70.29 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=30.0
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeE
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~ 281 (356)
..+..++++|||||||||++++++|.+.+..|.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 34567899999999999999999999888777664
No 315
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.18 E-value=0.00026 Score=65.22 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCh
Q psy2684 9 FSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQ 65 (356)
Q Consensus 9 LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~ 65 (356)
++..++||++||++++.+|+ +|.|| |+++.+ ....+..+.+..+.|+|++||+-
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~--~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN--GLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH--HHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH--HHHHHHHHHHHcCCcEEEEECCc
Confidence 45566899999999999999 77788 666654 33455566666789999999983
No 316
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00035 Score=65.23 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=37.4
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHH
Q psy2684 23 LFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFL 68 (356)
Q Consensus 23 l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l 68 (356)
+..+|+|+|||||++ ||+.+...|.+.+.+. +.++|++||+.+.+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 356899999999999 9999999999999876 46899999997644
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00015 Score=61.46 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=26.4
Q ss_pred cceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
++|++..++.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 318
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.12 E-value=0.00016 Score=62.45 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred ceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++++.+ .+.+|+|||||||||++.+|.-.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 3444444 48999999999999999987543
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.11 E-value=0.0001 Score=65.99 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.8
Q ss_pred cCCeeeeecCCCCchhhHHHHHh---CCCCCCcceeE
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLK---GELTPNKGELR 281 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~---g~~~~~~g~~~ 281 (356)
.+..++++|+|||||||++++|+ |...++.|.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 45689999999999999999999 88777766654
No 320
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.10 E-value=0.00081 Score=64.27 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=42.1
Q ss_pred cCCCEEEEeCCCCCCCHHH----------------HHHHHHHHHhcCcEEEEEecCh-------------------hHHh
Q psy2684 25 LEPTLLLLDEPTNHLDLNA----------------VIWLDNYLQTWKKTLLVVSHDQ-------------------SFLN 69 (356)
Q Consensus 25 ~~p~~llLDEPt~~LD~~~----------------~~~l~~~l~~~~~tvi~vsHd~-------------------~~l~ 69 (356)
.+|+++++|||++.+|... ...|.++.++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 5799999999999999631 1234555567789999999993 2356
Q ss_pred hhcCEEEEEeCC
Q psy2684 70 NICTDIIHLDMK 81 (356)
Q Consensus 70 ~~~~~i~~l~~g 81 (356)
..||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 778999999865
No 321
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.07 E-value=0.00016 Score=61.27 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred CCeeeeecCCCCchhhHHHHHhC
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKG 271 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g 271 (356)
++.++++|+|||||||+++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 35678999999999999999986
No 322
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.06 E-value=0.00013 Score=61.97 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=20.5
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678888887766 789999999999999999987
No 323
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.06 E-value=0.00011 Score=67.18 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=26.8
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
.++.+++|+|++|||||||++.|.+++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 356789999999999999999999999874
No 324
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.00026 Score=60.70 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=23.6
Q ss_pred cCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 232 p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
|..-+...++.++.+..+..+.++|++||||||+.+.|++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 333445567788888888999999999999999999998643
No 325
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.02 E-value=0.00021 Score=66.86 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=21.9
Q ss_pred ceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 199 VNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
..+++.+ .+.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3444444 488999999999999999763
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.01 E-value=0.00031 Score=60.80 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.7
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
.++.++++|||||||||+++.|++...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4667899999999999999999998765
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00019 Score=61.82 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=26.0
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
.+.+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999987663
No 328
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.00 E-value=0.00018 Score=67.74 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=34.0
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~ 239 (356)
-+++|+++.|.||+|||||||+..++....+..|.+.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly 94 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF 94 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 37899999999999999999999999998888887644
No 329
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.00 E-value=0.00022 Score=69.05 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=30.5
Q ss_pred eEEEEcCCCCCcchhhhhhccccc------------cCCCceeEeeecc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT------------PNKGKVLLEKVNF 244 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~------------p~~G~i~~~g~~~ 244 (356)
.++|+|+||+|||||++.|.|... +..|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 689999999999999999999854 5667777777654
No 330
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.99 E-value=0.00027 Score=60.69 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.2
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
..++.++++|+|||||||++++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.00023 Score=61.10 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
..+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 3579999999999999999998875 455555443
No 332
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.96 E-value=8.1e-05 Score=71.65 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHHhcCcEEEEEecChhHH
Q psy2684 9 FSGGWRIRVSLARALFLEPT---LLLLDEPT-NHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68 (356)
Q Consensus 9 LSgGe~~r~~la~~l~~~p~---~llLDEPt-~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l 68 (356)
++.+.++|++||++++.+|+ ||++|||| ++||+....|+..+ .. +.+||+|.|..+.+
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE-KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-TT-TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-hc-cCcEEEEEEcccCc
Confidence 45667778889999999999 99999999 69999887777654 33 67888888875543
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00028 Score=58.67 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=22.8
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
+..++++|+|||||||+++.|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998654
No 334
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.93 E-value=0.00043 Score=68.14 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=40.4
Q ss_pred cceeeecCCCeEEEEcCCCCCcchhhhhhcc--ccccCCCceeEeeecc
Q psy2684 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNF 244 (356)
Q Consensus 198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g--l~~p~~G~i~~~g~~~ 244 (356)
.+++++.++..+.|+|++||||||++++|.. ++.++.+++.+-..|+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 4788999999999999999999999999876 6677778888777665
No 335
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.93 E-value=0.00024 Score=67.14 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=27.1
Q ss_pred EEEEcCCCCCcchhhhhhccccc-----------cCCCceeEeeec
Q psy2684 209 VALVGPNGIGKSTFLNLLKGELT-----------PNKGKVLLEKVN 243 (356)
Q Consensus 209 ~~i~G~nGsGKSTll~~l~gl~~-----------p~~G~i~~~g~~ 243 (356)
++|+|++|||||||++.|+|... |..|.+.++|..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 89999999999999999999876 445666665544
No 336
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00022 Score=61.18 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.92 E-value=8.8e-05 Score=62.45 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=55.3
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCC---cceeEeCC--------------C-ceEE----EeecCcCCCCCCCCCHHH
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP--------------R-LRIG----KFDQHSGEHLFPDDTPCE 307 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~---~g~~~~~~--------------~-~~ig----~~~Q~~~~~l~~~~t~~e 307 (356)
+.++++|+|||||||+++.|++.+.+. .|.+.... + ..+| ++.|++.. +..+.. .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~-~i~~~~-~~ 80 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLA-FIRRVS-EE 80 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEE-EEEECC-HH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEE-EEecCC-hh
Confidence 468999999999999999999998776 55553210 0 1244 56665421 100000 00
Q ss_pred HHHHhcCCCHHHHHHHHhh-c-CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684 308 YLMKLFNLPYEKSRRQLGM-F-GLPSYAHTIPIRDLSGGQKARVALAELTL 356 (356)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~~-~-~l~~~~~~~~~~~LSGGqkqRvalA~~~l 356 (356)
. ...+.+++.. + |++... ...|||||+||++|||+++
T Consensus 81 ~--------~a~l~~~i~~~l~g~dt~i----~EglSgGq~qri~lARall 119 (171)
T 2f1r_A 81 E--------GNDLDWIYERYLSDYDLVI----TEGFSKAGKDRIVVVKKPE 119 (171)
T ss_dssp H--------HTCHHHHHHHHTTTCSEEE----EESCGGGCCCEEEECSSGG
T ss_pred h--------hhCHHHHHHhhCCCCCEEE----ECCcCCCCCcEEEEEeccc
Confidence 0 0023445544 3 332222 2359999999999999864
No 338
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.90 E-value=0.00014 Score=68.14 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=34.2
Q ss_pred cccccceeeecCCCe--EEEEcCCCCCcchhhhhhccccc
Q psy2684 194 VLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 194 ~~l~~~sl~i~~ge~--~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
.+++.+++.+.+|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 477888999999999 99999999999999999998753
No 339
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.89 E-value=0.00077 Score=68.05 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=43.7
Q ss_pred ccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhc-----CcEEEEEecChhHH--------hhh----cCEEEEEeC
Q psy2684 24 FLEPTLLLLDEP------TNHLDLNAVIWLDNYLQTW-----KKTLLVVSHDQSFL--------NNI----CTDIIHLDM 80 (356)
Q Consensus 24 ~~~p~~llLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~l--------~~~----~~~i~~l~~ 80 (356)
...|+++|+||| |++||+.....+.++++.+ +.++++++||.+.. ..+ +..|+++..
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 346999999999 9999999988888877775 46889999997743 222 356788875
Q ss_pred C
Q psy2684 81 K 81 (356)
Q Consensus 81 g 81 (356)
+
T Consensus 224 ~ 224 (608)
T 3szr_A 224 P 224 (608)
T ss_dssp G
T ss_pred h
Confidence 4
No 340
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.87 E-value=0.0003 Score=66.96 Aligned_cols=40 Identities=30% Similarity=0.603 Sum_probs=31.3
Q ss_pred ecCCCeEEEEcCCCCCcchhhhhhccc-----------cccCCCceeEeee
Q psy2684 203 LDMESRVALVGPNGIGKSTFLNLLKGE-----------LTPNKGKVLLEKV 242 (356)
Q Consensus 203 i~~ge~~~i~G~nGsGKSTll~~l~gl-----------~~p~~G~i~~~g~ 242 (356)
+..+..++|+|++|+|||||++.|+|. +.|..|.+.+.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456778999999999999999999998 5666677766543
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.85 E-value=0.0007 Score=58.20 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.1
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
+..+..++++|++||||||+++.|.+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456778999999999999999999864
No 342
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.83 E-value=0.00031 Score=58.55 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+|..++|+|++|+|||||++.+.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999865
No 343
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.76 E-value=0.00034 Score=58.68 Aligned_cols=22 Identities=50% Similarity=0.844 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00031 Score=63.69 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.0
Q ss_pred eeeecCCCCchhhHHHHHhCCCCC
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
++++|||||||||+++++++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 889999999999999999997655
No 345
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.75 E-value=0.0005 Score=60.44 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=24.0
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~ 272 (356)
...+..++++|+|||||||++++|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355778999999999999999999986
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.75 E-value=0.00051 Score=58.88 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=25.3
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
...++.++++|+|||||||+++.|++.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35677899999999999999999998765
No 347
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.73 E-value=0.00041 Score=61.92 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=32.2
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~ 244 (356)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 455677899999999999999999988764 24566666554
No 348
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.72 E-value=0.00054 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcchhhhhhcccccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
.++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999996433
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.71 E-value=0.0015 Score=53.37 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=30.7
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcE-EEEEecC
Q psy2684 22 ALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKT-LLVVSHD 64 (356)
Q Consensus 22 ~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~t-vi~vsHd 64 (356)
+++.+|++|+||||+. +|....+.|.+++.. .+.+ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3467899999999998 665556667666654 3567 8888884
No 350
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.71 E-value=0.00035 Score=64.22 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
++.+++|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
No 351
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.69 E-value=0.00052 Score=62.94 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=33.0
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~ 295 (356)
.++.++++|+||+||||++..|++.+.+..| .++.++++++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-------~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-------KKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CEEEEEecCc
Confidence 4567899999999999999999987765444 3578888875
No 352
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.68 E-value=0.00069 Score=55.84 Aligned_cols=23 Identities=48% Similarity=0.764 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.68 E-value=0.00041 Score=59.64 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=25.6
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCCCCCcce
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGE 279 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~ 279 (356)
.+..++++|+|||||||+++.+.+.+.+..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~ 52 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGIS 52 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe
Confidence 45678999999999999999999876544443
No 354
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.66 E-value=0.00067 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.5
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
+++++|+||+|||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999987654
No 355
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0053 Score=53.68 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=42.9
Q ss_pred cCCCEEEEeCCCCCC--CHHH----HHHHHHHHHhcCcEEEEEecChhH--------HhhhcCEEEEEeC
Q psy2684 25 LEPTLLLLDEPTNHL--DLNA----VIWLDNYLQTWKKTLLVVSHDQSF--------LNNICTDIIHLDM 80 (356)
Q Consensus 25 ~~p~~llLDEPt~~L--D~~~----~~~l~~~l~~~~~tvi~vsHd~~~--------l~~~~~~i~~l~~ 80 (356)
.+|+++++|+|+..+ |+.. ...|.+++++++.|||+++|.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 234566667788999999998765 4577899999974
No 356
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.63 E-value=0.00074 Score=58.04 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=25.1
Q ss_pred cccCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 244 ~~~~~~~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
+....++.++++||||+|||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445677899999999999999999998654
No 357
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.62 E-value=0.00054 Score=57.72 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCCcchhhhhhccccccCC---CceeEee
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGELTPNK---GKVLLEK 241 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~~p~~---G~i~~~g 241 (356)
.+++|+|++|||||||++.|.+.+.+.. |.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5789999999999999999999876543 4444443
No 358
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.61 E-value=0.00038 Score=71.04 Aligned_cols=38 Identities=37% Similarity=0.438 Sum_probs=30.6
Q ss_pred eeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCce
Q psy2684 200 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKV 237 (356)
Q Consensus 200 sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i 237 (356)
++++.++..++|+|++|+|||||++.|.+...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456788999999999999999999999987665 56666
No 359
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.61 E-value=0.00075 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~ 272 (356)
.++.++++|+|||||||+++.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999864
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.58 E-value=0.00084 Score=62.20 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=29.2
Q ss_pred eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~ 295 (356)
.+|++|+|||||||++++|.+.+..... ...++++.++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~------~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPD------HPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTT------CCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCC------CCeEEEEeecc
Confidence 5899999999999999999987653211 12467777764
No 361
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.57 E-value=0.00044 Score=60.95 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=27.6
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhcc---ccccCCCcee
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKG---ELTPNKGKVL 238 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~g---l~~p~~G~i~ 238 (356)
.+|.+++|+|++||||||+.+.|++ ...++.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 5688999999999999999999986 3334555543
No 362
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.56 E-value=0.0012 Score=62.91 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.6
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhC
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKG 271 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g 271 (356)
+..+..++++|+||+|||||+++|+|
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34577899999999999999999999
No 363
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.00034 Score=61.83 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCCcchhhhhhc---cccccCCCce
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLK---GELTPNKGKV 237 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~i 237 (356)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3479999999999999999998 5555556655
No 364
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.52 E-value=0.00092 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=21.3
Q ss_pred eeeeecCCCCchhhHHHHHhCCC
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~~ 273 (356)
+++++|+||+|||||++.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999874
No 365
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.00063 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 366
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.50 E-value=0.0063 Score=56.98 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=49.4
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---H---HHHHHHHHhcCcEEEEEecChh------
Q psy2684 15 IRVSLARALFLE--PTLLLLDEPTNHL----------DL----NA---V---IWLDNYLQTWKKTLLVVSHDQS------ 66 (356)
Q Consensus 15 ~r~~la~~l~~~--p~~llLDEPt~~L----------D~----~~---~---~~l~~~l~~~~~tvi~vsHd~~------ 66 (356)
+.+.++++++.+ |+++|+|||++.+ |+ .. . ..|..++++++.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345667777654 9999999999998 32 11 1 2234445778999999999754
Q ss_pred ----------HHhhhcCEEEEEeCCeEeE
Q psy2684 67 ----------FLNNICTDIIHLDMKKLFY 85 (356)
Q Consensus 67 ----------~l~~~~~~i~~l~~g~~~~ 85 (356)
.+..+||.++.++.+....
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeee
Confidence 2567899999998776554
No 367
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.44 E-value=0.0068 Score=58.82 Aligned_cols=74 Identities=11% Similarity=-0.012 Sum_probs=53.2
Q ss_pred CcCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH--------HHH----HHHHHHHHhcCcEEEEEec---------
Q psy2684 7 KEFSGGWRIRVSLARALF--LEPTLLLLDEPTNHLDL--------NAV----IWLDNYLQTWKKTLLVVSH--------- 63 (356)
Q Consensus 7 ~~LSgGe~~r~~la~~l~--~~p~~llLDEPt~~LD~--------~~~----~~l~~~l~~~~~tvi~vsH--------- 63 (356)
..+|.++.+. .++.+. .+|+++|+|+++...+. ..+ ..|..+.++++.+||+++|
T Consensus 294 ~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 4689988774 445554 68999999999998843 122 2355555677899999999
Q ss_pred C--hh--------HHhhhcCEEEEEeCCe
Q psy2684 64 D--QS--------FLNNICTDIIHLDMKK 82 (356)
Q Consensus 64 d--~~--------~l~~~~~~i~~l~~g~ 82 (356)
| .. .+...||.|+.|+++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 2 22 4677899999997654
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0004 Score=62.07 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=30.3
Q ss_pred eEeeeccccCc---CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 238 LLEKVNFGLDM---ESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 238 ~~~g~~~~~~~---~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
.+++.++.+.. ++.++++|++||||||+.+.|++.+
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45667777777 8999999999999999999998743
No 369
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.43 E-value=0.00096 Score=62.62 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=31.9
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~ 240 (356)
-+++|+++.|.||+|||||||+..++.......|.+.|-
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 95 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999999999999999888887665556666553
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.43 E-value=0.0013 Score=62.56 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
.+..+.|+|++||||||+++.+.....+..+.|.+-+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5677899999999999999999998888888887744
No 371
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.41 E-value=0.00095 Score=64.37 Aligned_cols=39 Identities=28% Similarity=0.194 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~ 243 (356)
++.+++++|++|+||||++..|+..+.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 467899999999999999999999999998899886654
No 372
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.39 E-value=0.00082 Score=65.35 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=41.7
Q ss_pred CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC-ceeEee
Q psy2684 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLLEK 241 (356)
Q Consensus 192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~~~g 241 (356)
+-..|+++..-+.+|+.+.|.|++|+|||||+..+++...+..| .|.+.+
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33578888888999999999999999999999999998877555 566654
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.37 E-value=0.0004 Score=64.35 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhc
Q psy2684 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNIC 72 (356)
Q Consensus 8 ~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~ 72 (356)
+||+||+||+..+.+++.+||++ ||| ..+.+.++.. +.+|+++||+.-.++.+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence 68999999998888888999987 998 3444444433 579999999755444443
No 374
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0014 Score=57.65 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTPNKG 235 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G 235 (356)
.++|+|++|+|||||++.|.|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999998776555
No 375
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0016 Score=55.79 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=19.7
Q ss_pred eeeeecCCCCchhhHHHHHhC
Q psy2684 251 RVALVGPNGIGKSTFLNLLKG 271 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g 271 (356)
.++++|+|||||||+.+.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999987
No 376
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.31 E-value=0.0006 Score=65.52 Aligned_cols=64 Identities=23% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH---HHHHHHHhcCcEEEEEe-cChhHHhhh
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI---WLDNYLQTWKKTLLVVS-HDQSFLNNI 71 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~---~l~~~l~~~~~tvi~vs-Hd~~~l~~~ 71 (356)
.++.+||+|++|++.+|++|+..|.+|+| |.+|+.... .+.+.++..+.++|+|| |..+-+.++
T Consensus 248 ~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 248 EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 45678999999999999999999999999 999986443 33444444566777776 444434333
No 377
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.0013 Score=54.32 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 378
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.26 E-value=0.0016 Score=56.59 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=24.4
Q ss_pred CeeeeecCCCCchhhHHHHHhCCC---CCCccee
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGEL---TPNKGEL 280 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~---~~~~g~~ 280 (356)
..++++|++||||||+++.+++.+ .++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 478999999999999999998754 3444443
No 379
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.26 E-value=0.0014 Score=56.11 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.7
Q ss_pred eeeeecCCCCchhhHHHHHhC
Q psy2684 251 RVALVGPNGIGKSTFLNLLKG 271 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g 271 (356)
.++++|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 380
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.25 E-value=0.001 Score=63.11 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=28.2
Q ss_pred eeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
++.++.+..++.++++||||+||||+++++++..
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445567778899999999999999999999853
No 381
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.23 E-value=0.0017 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56799999999999999999987653
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.23 E-value=0.0019 Score=52.86 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=17.9
Q ss_pred eeeeecCCCCchhhHHHHHh
Q psy2684 251 RVALVGPNGIGKSTFLNLLK 270 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~ 270 (356)
..+++||||+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999885
No 383
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.20 E-value=0.0012 Score=58.72 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=23.6
Q ss_pred ccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
..+++.+..| +.|.||+|+||||+++++++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3344444444 88999999999999999998764
No 384
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.19 E-value=0.0015 Score=61.70 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.6
Q ss_pred ccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227 (356)
Q Consensus 197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~ 227 (356)
++..+++.+ .+.+|+|+|||||||++.+|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 455666655 489999999999999999876
No 385
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.19 E-value=0.00048 Score=62.27 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=21.2
Q ss_pred eeeecCCCCchhhHHHHHhCCCC
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~ 274 (356)
+.++||||+||||+++++++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 386
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.18 E-value=0.00084 Score=66.82 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=28.2
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCCCCCCcc
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g 278 (356)
..++.++++|+|||||||++++|++.+.+..|
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 45778999999999999999999999877664
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.12 E-value=0.0016 Score=67.91 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=29.0
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
|.+.+++.+.|+||+|||||||+++|++.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 47899999999999999999999999998643
No 388
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.11 E-value=0.00056 Score=60.80 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=21.1
Q ss_pred eeeecCCCCchhhHHHHHhCCCC
Q psy2684 252 VALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 252 ialvG~nG~GKsTll~~l~g~~~ 274 (356)
+.++||||+||||+++++++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88899999999999999998764
No 389
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.11 E-value=0.0026 Score=53.40 Aligned_cols=20 Identities=45% Similarity=0.483 Sum_probs=18.0
Q ss_pred CCCCCCChHHHHHHHHHHHc
Q psy2684 336 IPIRDLSGGQKARVALAELT 355 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA~~~ 355 (356)
+++..||||||||++||+++
T Consensus 60 ~~~~~LSgGekqr~ala~~l 79 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVF 79 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHH
Confidence 46789999999999999986
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.09 E-value=0.0021 Score=54.66 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~ 242 (356)
.+++|+|++||||||+.+.|+.. |..+++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 46899999999999999999985 55566543
No 391
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.09 E-value=0.00043 Score=63.30 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=28.6
Q ss_pred CeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~ 239 (356)
..+.|.||+|+||||+++++++...+..+.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~ 80 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 80 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence 578999999999999999999998887776543
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.06 E-value=0.0018 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
..+.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999843
No 393
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.04 E-value=0.0021 Score=52.90 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCcchhhhhh
Q psy2684 208 RVALVGPNGIGKSTFLNLL 226 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l 226 (356)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 394
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.04 E-value=0.0015 Score=60.51 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=31.7
Q ss_pred eeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280 (356)
Q Consensus 241 g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~ 280 (356)
+.++....++.++++|+||+||||++..|++.+.+..+.+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3445556678899999999999999999998876655543
No 395
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.02 E-value=0.0027 Score=59.80 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCCCcchhhhhhcc-----------ccccCCCceeEee
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKG-----------ELTPNKGKVLLEK 241 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~g-----------l~~p~~G~i~~~g 241 (356)
|-.++|+|.+|+|||||++.|++ .+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45789999999999999999998 4456667766654
No 396
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.01 E-value=0.0023 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
|-++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 397
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.99 E-value=0.002 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.97 E-value=0.00065 Score=58.47 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCcchhhhhhccccccC
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
+++|.|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999998877643
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.93 E-value=0.0023 Score=55.31 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCcchhhhhhcc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~g 228 (356)
+-+++|+|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 400
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.93 E-value=0.0024 Score=54.34 Aligned_cols=20 Identities=45% Similarity=0.775 Sum_probs=17.9
Q ss_pred EEEEcCCCCCcchhhhhhcc
Q psy2684 209 VALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 209 ~~i~G~nGsGKSTll~~l~g 228 (356)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998764
No 401
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.92 E-value=0.0035 Score=51.51 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=21.5
Q ss_pred CeeeeecCCCCchhhHHHHHhCCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
.+++++|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 402
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.91 E-value=0.0025 Score=53.36 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCcchhhhhhccccccC
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
+++|+|++|||||||+..|...+...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 68999999999999999999887654
No 403
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.88 E-value=0.0024 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 404
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.87 E-value=0.0032 Score=53.60 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998765
No 405
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0024 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|+||+|||||||.+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999998653
No 406
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.85 E-value=0.0027 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999843
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.84 E-value=0.003 Score=58.74 Aligned_cols=24 Identities=42% Similarity=0.821 Sum_probs=21.7
Q ss_pred CeeeeecCCCCchhhHHHHHhCCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
+.++++||||+||||+++++++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568889999999999999999876
No 408
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.84 E-value=0.003 Score=52.83 Aligned_cols=28 Identities=43% Similarity=0.793 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCcchhhhhhccc----cccCCC
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE----LTPNKG 235 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl----~~p~~G 235 (356)
.++|+|++|+|||||++.+.+- +.|+.|
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 5899999999999999999986 355666
No 409
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.83 E-value=0.0036 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.5
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
+.+++++|++|+|||||++.+.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4679999999999999999999864
No 410
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.76 E-value=0.0036 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999997644
No 411
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.76 E-value=0.0029 Score=56.91 Aligned_cols=24 Identities=46% Similarity=0.645 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCcchhhhhhccccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
.++|+|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999753
No 412
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.72 E-value=0.0033 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCcchhhhhhcc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~g 228 (356)
++.|.|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 413
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.67 E-value=0.005 Score=51.35 Aligned_cols=23 Identities=48% Similarity=0.780 Sum_probs=21.0
Q ss_pred CeeeeecCCCCchhhHHHHHhCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~ 272 (356)
-+++++|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.64 E-value=0.004 Score=54.65 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=25.9
Q ss_pred eeEeeeccccC---cCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 237 VLLEKVNFGLD---MESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 237 i~~~g~~~~~~---~~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
+-+.+.++... .+..+++.|++||||||+++.|...+..
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 33455555443 6788999999999999999999887665
No 415
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=95.64 E-value=0.0031 Score=51.53 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHH
Q psy2684 336 IPIRDLSGGQKARVALA 352 (356)
Q Consensus 336 ~~~~~LSGGqkqRvalA 352 (356)
+++.+|||||||||+||
T Consensus 53 ~~~~~LSgGe~qrv~lA 69 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLA 69 (148)
T ss_dssp ECGGGSCHHHHHHHHHH
T ss_pred CChhHCCHHHHHHHHHH
Confidence 47799999999999887
No 416
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.63 E-value=0.0037 Score=52.76 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.4
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998543
No 417
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.61 E-value=0.0041 Score=56.60 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g 241 (356)
.+..+.|+||+||||||+.+.|+..+. .+.+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 355789999999999999999976442 24455554
No 418
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.61 E-value=0.0021 Score=54.48 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=25.0
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
..+..+-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345567789999999999999999998654
No 419
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.58 E-value=0.0044 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=23.2
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
..|-+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999864
No 420
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.57 E-value=0.0057 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.6
Q ss_pred eeeeecCCCCchhhHHHHHhCC
Q psy2684 251 RVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~g~ 272 (356)
+++++|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 421
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.56 E-value=0.0046 Score=53.00 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=23.8
Q ss_pred ecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 203 LDMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 203 i~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
..+|-+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998643
No 422
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.53 E-value=0.0049 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.3
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
.+..++++|++||||||+++.+++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999998764
No 423
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.49 E-value=0.005 Score=51.69 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCcchhhhhhccc-----cccCCC
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE-----LTPNKG 235 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl-----~~p~~G 235 (356)
.++|+|++|+|||||++.+.+- +.|+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 4799999999999999755543 455544
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.49 E-value=0.0049 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4668999999999999999999754
No 425
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.47 E-value=0.0058 Score=52.57 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=17.6
Q ss_pred eeeeecCCCCchhhHHHHHh
Q psy2684 251 RVALVGPNGIGKSTFLNLLK 270 (356)
Q Consensus 251 ~ialvG~nG~GKsTll~~l~ 270 (356)
..+++|+||+||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 56888999999999998874
No 426
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.47 E-value=0.0032 Score=59.03 Aligned_cols=27 Identities=48% Similarity=0.703 Sum_probs=22.6
Q ss_pred CCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
...++++|++|+|||||++.+++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 346899999999999999999985433
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.46 E-value=0.0038 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 428
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.42 E-value=0.007 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=22.5
Q ss_pred cCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 248 MESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 248 ~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
.+..+.++|++||||||+.+.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678899999999999999998765
No 429
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.41 E-value=0.0048 Score=52.66 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTP 232 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p 232 (356)
+|-+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999886554
No 430
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.41 E-value=0.0041 Score=56.88 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=26.5
Q ss_pred eeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 201 FGLDMESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+.+.++..+.|.||+|+||||+++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346778889999999999999999999875
No 431
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.40 E-value=0.0034 Score=61.32 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=0.0
Q ss_pred ccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
.+.++++.+++| +.|+||+|+|||||++++++
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHH
No 432
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.38 E-value=0.01 Score=54.32 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=21.7
Q ss_pred CeeeeecCCCCchhhHHHHHhCCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
..++++|++|+|||||++.+.|..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999863
No 433
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.36 E-value=0.0049 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCcchhhhhhccccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987654
No 434
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.0056 Score=49.79 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcchhhhhhccccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 479999999999999999988543
No 435
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.0049 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCcchhhhhhcccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
-.++|+|+.|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998865
No 436
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.34 E-value=0.0073 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.4
Q ss_pred CeeeeecCCCCchhhHHHHHhCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~ 272 (356)
..++++|++||||||+.+.|++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 437
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.29 E-value=0.0058 Score=51.54 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCcchhhhhhccccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
No 438
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.29 E-value=0.0054 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCcchhhhhhccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
+-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 439
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.28 E-value=0.0099 Score=52.10 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=23.9
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
-+++++|++|+|||||++.++|......
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 4789999999999999999999765443
No 440
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.26 E-value=0.0068 Score=55.25 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.-+++|.|++||||||+.+.|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999988754
No 441
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.25 E-value=0.0061 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 442
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.24 E-value=0.018 Score=58.02 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.4
Q ss_pred cCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684 246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277 (356)
Q Consensus 246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~ 277 (356)
+..++.+.++||||+||||++++|++.+.+..
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 44556788999999999999999999987765
No 443
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.18 E-value=0.0061 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
No 444
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.16 E-value=0.0071 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.797 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998764
No 445
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.16 E-value=0.0063 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCcchhhhhhcc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~g 228 (356)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 446
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.16 E-value=0.0075 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 447
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.14 E-value=0.0053 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.7
Q ss_pred ecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684 203 LDMESRVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 203 i~~ge~~~i~G~nGsGKSTll~~l~g 228 (356)
+..|+.+.++||+||||||++..+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 45688999999999999998876643
No 448
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.13 E-value=0.0069 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 449
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.0073 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 450
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.13 E-value=0.012 Score=49.53 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=23.3
Q ss_pred cccCcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 244 ~~~~~~~~ialvG~nG~GKsTll~~l~g~ 272 (356)
+....+..+.++|+.||||||+.+.++..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34445678999999999999999998754
No 451
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.11 E-value=0.0076 Score=49.13 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997644
No 452
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.10 E-value=0.0073 Score=53.53 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCcchhhhhhccccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGELT 231 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~~ 231 (356)
.++|+|.+|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998653
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.07 E-value=0.0068 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 454
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.07 E-value=0.009 Score=55.75 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=25.7
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988875
No 455
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.07 E-value=0.0063 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999997653
No 456
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.03 E-value=0.0072 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCcchhhhhhcccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 457
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.01 E-value=0.0074 Score=50.61 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCcchhhhhhcccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 458
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.01 E-value=0.0073 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999988754
No 459
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.99 E-value=0.0081 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++-++.|+|+.||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999743
No 460
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.0084 Score=56.20 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCcchhhhhhcc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKG 228 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~g 228 (356)
.++|+|++|+|||||++.++|
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
No 461
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.98 E-value=0.0075 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999997643
No 462
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.97 E-value=0.0094 Score=51.55 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999997654
No 463
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.97 E-value=0.0077 Score=50.30 Aligned_cols=23 Identities=43% Similarity=0.626 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998764
No 464
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.96 E-value=0.0076 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998765
No 465
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.96 E-value=0.0083 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 466
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.96 E-value=0.0084 Score=50.16 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCcchhhhhhccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl 229 (356)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.95 E-value=0.0084 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCcchhhhhhccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl 229 (356)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999865
No 468
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.95 E-value=0.0084 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 469
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.94 E-value=0.016 Score=55.15 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=22.8
Q ss_pred CcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684 247 DMESRVALVGPNGIGKSTFLNLLKGE 272 (356)
Q Consensus 247 ~~~~~ialvG~nG~GKsTll~~l~g~ 272 (356)
..+.+++++|+||+|||||++.+.+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45678999999999999999999987
No 470
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.94 E-value=0.0086 Score=49.18 Aligned_cols=23 Identities=43% Similarity=0.463 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 471
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.93 E-value=0.0077 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999998865
No 472
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.92 E-value=0.011 Score=48.69 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998743
No 473
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.92 E-value=0.012 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.4
Q ss_pred eecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684 202 GLDMESRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl 229 (356)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999988764
No 474
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.92 E-value=0.0079 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999887654
No 475
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.91 E-value=0.0074 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 476
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.91 E-value=0.011 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.9
Q ss_pred CCeeeeecCCCCchhhHHHHHhC
Q psy2684 249 ESRVALVGPNGIGKSTFLNLLKG 271 (356)
Q Consensus 249 ~~~ialvG~nG~GKsTll~~l~g 271 (356)
+..++++|++||||||+.+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999874
No 477
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.0082 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999887654
No 478
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.88 E-value=0.0083 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999764
No 479
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.87 E-value=0.0085 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998864
No 480
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.87 E-value=0.01 Score=50.27 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999997653
No 481
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.87 E-value=0.0065 Score=56.65 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=25.8
Q ss_pred cccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275 (356)
Q Consensus 244 ~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~ 275 (356)
+....+..++++|+||+||||+++.+++.+.+
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 33455678999999999999999999876543
No 482
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.85 E-value=0.009 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.+-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999997543
No 483
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.85 E-value=0.0091 Score=52.95 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
+++|.|+.||||||+.+.|+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999774
No 484
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.84 E-value=0.008 Score=62.31 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=53.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHH-HHHHHhcC--cEEEE-EecChhHHhhhcCE
Q psy2684 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTN-HLDLNAVIWL-DNYLQTWK--KTLLV-VSHDQSFLNNICTD 74 (356)
Q Consensus 4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~-~LD~~~~~~l-~~~l~~~~--~tvi~-vsHd~~~l~~~~~~ 74 (356)
..+.-+|+|+.+|..++..++.+++++|||||.. +||......+ ..++.... .+|++ +|||.+.+..+++.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 3456689999999999999999999999999996 8997765443 34443332 35555 48998877776654
No 485
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.84 E-value=0.0085 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999764
No 486
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.84 E-value=0.012 Score=50.07 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~ 238 (356)
..+.|.||+|+|||||+++++.........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 67899999999999999999988765555544
No 487
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.83 E-value=0.011 Score=50.22 Aligned_cols=25 Identities=44% Similarity=0.579 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
+-+++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998644
No 488
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.82 E-value=0.01 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCcchhhhhhccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl 229 (356)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
No 489
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.80 E-value=0.012 Score=52.88 Aligned_cols=25 Identities=44% Similarity=0.620 Sum_probs=22.1
Q ss_pred CeeeeecCCCCchhhHHHHHhCCCC
Q psy2684 250 SRVALVGPNGIGKSTFLNLLKGELT 274 (356)
Q Consensus 250 ~~ialvG~nG~GKsTll~~l~g~~~ 274 (356)
.+++++|++|+|||||++.+.|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999998643
No 490
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.79 E-value=0.0082 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998875
No 491
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.79 E-value=0.0091 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCcchhhhhhccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl 229 (356)
.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 492
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.77 E-value=0.0098 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|.+|+|||||++.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999987754
No 493
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.76 E-value=0.011 Score=51.16 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
.+..+.|.||+|+||||+++.++......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999998876544
No 494
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.74 E-value=0.009 Score=55.70 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=26.3
Q ss_pred cCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684 204 DMESRVALVGPNGIGKSTFLNLLKGELTPN 233 (356)
Q Consensus 204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~ 233 (356)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457789999999999999999999987664
No 495
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.72 E-value=0.01 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCcchhhhhhccc
Q psy2684 207 SRVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 207 e~~~i~G~nGsGKSTll~~l~gl 229 (356)
-+++|.|+.||||||+.+.|+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 496
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.70 E-value=0.0098 Score=48.27 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCcchhhhhhccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGE 229 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl 229 (356)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998864
No 497
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.70 E-value=0.014 Score=56.33 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=44.8
Q ss_pred CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273 (356)
Q Consensus 206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~ 273 (356)
++.+.+-..+|.|-..|+..+...++....... ... .....-+++++|+||+|||||++.++|..
T Consensus 140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~--~~~-~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 140 GEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE--SKP-EITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSS--SCC-CCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEeccCCCCHHHHHHHHHHhcccccccch--hcc-ccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 567788888999988888888766543211100 000 01123479999999999999999999974
No 498
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.69 E-value=0.01 Score=53.02 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684 205 MESRVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 205 ~ge~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999998653
No 499
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.69 E-value=0.0098 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 500
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.66 E-value=0.01 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcchhhhhhcccc
Q psy2684 208 RVALVGPNGIGKSTFLNLLKGEL 230 (356)
Q Consensus 208 ~~~i~G~nGsGKSTll~~l~gl~ 230 (356)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998863
Done!