RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2684
(356 letters)
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 293 bits (751), Expect = 3e-95
Identities = 127/356 (35%), Positives = 186/356 (52%), Gaps = 50/356 (14%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVS 62
++ SGGWR RV+LARAL EP LLLLDEPTNHLDL ++ WL++YL+ + T++VVS
Sbjct: 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVS 207
Query: 63 HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
HD+ FL+N+ T I+ LD KL YKGN++ + + ++ ++ YE Q+K++ + +
Sbjct: 208 HDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEW- 266
Query: 123 MSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP-YLPPPVLG 181
+ + KA + KA ++R + + + E + FRFP P L VL
Sbjct: 267 IRRGKAAASKAKKA---KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLE 323
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+V+ GY GG++LL+ ++F +D R+A+VGPNG GKST L LL GEL P G V
Sbjct: 324 FENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV---- 379
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
+ ++IG FDQH + L P
Sbjct: 380 ---------------------------------------KVGETVKIGYFDQHR-DELDP 399
Query: 302 DDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
D T E L + F + ++ R LG FG P+ LSGG+KAR+ LA+L L
Sbjct: 400 DKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL 455
Score = 99.2 bits (248), Expect = 6e-23
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
QEK SGG + R+ LA+ L P LLLLDEPTNHLD+ ++ L+ L ++ T+L+
Sbjct: 432 DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLL 491
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKE 103
VSHD+ FL+ + T I ++ K+ ++G + Y++++KE
Sbjct: 492 VSHDRYFLDRVATRIWLVE-DKVEEFEGGYE----DYLEQKKE 529
Score = 81.9 bits (203), Expect = 5e-17
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 37/153 (24%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
+ LLE V+ L+ R+ LVG NG GKST L +L GEL P+ GE+ + LR+G Q
Sbjct: 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQE 74
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRR------------------------QLGMFGLP 330
L P+ T +Y+++ F E +L + L
Sbjct: 75 P--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132
Query: 331 SYAHTI-----------PIRDLSGGQKARVALA 352
+ A P+ LSGG + RVALA
Sbjct: 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA 165
Score = 67.7 bits (166), Expect = 2e-12
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
++ L +++ Y G + LLE V+ L+ R+ LVG NG GKST L +L GEL P+ G+
Sbjct: 1 MSMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 237 VLLEK 241
V K
Sbjct: 60 VTRPK 64
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 269 bits (688), Expect = 5e-84
Identities = 142/362 (39%), Positives = 196/362 (54%), Gaps = 63/362 (17%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
MQ K+TK FSGGWR+R++LARALF+EP LLLLDEPTNHLDL+AV+WL+ YL W KT +V
Sbjct: 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIV 396
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
VSH + FLN + TDI+HL +KL YKG++ F++ ++ K K +E E+ M++
Sbjct: 397 VSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQA 456
Query: 121 -----QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYL 175
+ +K + Q KAL +D D KF FP P
Sbjct: 457 FIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPD-------------YKFEFPTPDDR 503
Query: 176 P-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
P PP++ D +FGYPGG +L + +NFG+D++SR+A+VGPNGIGKST L L+ GEL P+
Sbjct: 504 PGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS 563
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
G V +S ++R+ F QH
Sbjct: 564 GTVF-------------------------------------------RSAKVRMAVFSQH 580
Query: 295 SGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 353
+ L P Y+M+ F +P +K R LG FG+ P+ LSGGQK+RVA A+
Sbjct: 581 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 640
Query: 354 LT 355
+T
Sbjct: 641 IT 642
Score = 61.4 bits (149), Expect = 3e-10
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
SGG + RV+ A+ F +P +LLLDEP+NHLDL+AV L L ++ +L+VSHD+ ++
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688
Query: 70 NICTDIIHLDMKKLFYYKGNFTLFKKM 96
++ + K+ + G F +KK
Sbjct: 689 GSVDELWVVSEGKVTPFHGTFHDYKKT 715
Score = 29.1 bits (65), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
GG+ L+ + L LVG NG GK+TFL
Sbjct: 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFL 220
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 190 bits (485), Expect = 3e-55
Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 71/360 (19%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVS 62
E+ +FSGGWR+R++LA+AL LLLLDEPTNHLDL+AVIWL+ +L++++ TL+++S
Sbjct: 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILIS 203
Query: 63 HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
HD+ FL+ I IIH++ + LF Y GN++ F+ + + YE Q++++ ++S
Sbjct: 204 HDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSY- 262
Query: 123 MSKEKAERQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIV--------KFRFPNPP 173
+ + +A KA K +QA+ R++ +LE+ E I F F P
Sbjct: 263 IDRFRA------KATKAKQAQSRIK---------MLER-MELIAPAHVDNPFHFSFRAPE 306
Query: 174 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233
LP P+L + V+ GY G +++L+ + LNL+ G
Sbjct: 307 SLPNPLLKMEKVSAGY-GDRIILDSIK----------------------LNLVPG----- 338
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
SR+ L+G NG GKST + LL GEL P GE+ + +++G F Q
Sbjct: 339 ----------------SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQ 382
Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
H E L D++P ++L +L E+ R LG FG T R SGG+KAR+ LA
Sbjct: 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442
Score = 62.5 bits (152), Expect = 1e-10
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 38/173 (21%)
Query: 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQ 65
T+ FSGG + R+ LA ++ P LLLLDEPTNHLDL+ L L ++ L+VVSHD+
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDR 487
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYV--------------------------Q 99
L + D+ + K+ + G+ +++ Q
Sbjct: 488 HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQARKDQ 547
Query: 100 KRKE---------LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARK 143
KR+E L KE EK+ M+ +AE + L +Q+RK
Sbjct: 548 KRREAELRTQTQPLRKEIARLEKE---MEKLNAQLAQAEEKLGDSELYDQSRK 597
Score = 44.4 bits (105), Expect = 7e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G +VLL+ ++ +V LVG NG GKST L LLK E++ + G
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58
Score = 42.5 bits (100), Expect = 3e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
+VLL+ ++ +V LVG NG GKST L LLK E++ + G
Sbjct: 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG 56
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 146 bits (371), Expect = 1e-39
Identities = 83/236 (35%), Positives = 125/236 (52%), Gaps = 28/236 (11%)
Query: 12 GWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNI 71
GW++RV LA+ALF P +LLLDEPTN+LD+N + WL++ L T++++SHD+ FLN++
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSV 218
Query: 72 CTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAE-- 129
CT + LD +L Y GN+ EY Q RE +K+KA+
Sbjct: 219 CTHMADLDYGELRVYPGNY---------------DEYMTAATQARERLLADNAKKKAQIA 263
Query: 130 ------RQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIVKF-RFPNPPYLPPPVLG 181
+ S A K +QA R ++ D + +E+ KP F RF L L
Sbjct: 264 ELQSFVSRFSANASKAKQATSRAKQIDKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALE 321
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ ++T G+ L + +N L+ R+A++G NG+GK+T L L GEL P+ G V
Sbjct: 322 VENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Score = 73.0 bits (180), Expect = 3e-14
Identities = 29/87 (33%), Positives = 55/87 (63%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH 63
KS K SGG + R+ + + +P +L++DEPTNH+D+ ++ L+ L+ ++ TL+ VSH
Sbjct: 434 KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSH 493
Query: 64 DQSFLNNICTDIIHLDMKKLFYYKGNF 90
D+ F++++ T II + + + G +
Sbjct: 494 DREFVSSLATRIIEITPDGVVDFSGTY 520
Score = 50.3 bits (121), Expect = 9e-07
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
K L E ++ +R L+G NG GKSTF+ +L G+L P+ G + P R+GK Q
Sbjct: 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71
Score = 45.3 bits (108), Expect = 4e-05
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
G K L E ++ +R L+G NG GKSTF+ +L G+L P+ G V L+
Sbjct: 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD 61
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 141 bits (359), Expect = 8e-38
Identities = 98/359 (27%), Positives = 167/359 (46%), Gaps = 78/359 (21%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
SGG R RV+L R L +P +LLLDEPTNHLD +V WL+ +LQ + T++ V+HD+ FL+
Sbjct: 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLD 222
Query: 70 NICTDIIHLDMKKLFYYKGNFTLF-----KKMYVQKRKELTKEYELQEKQ--IREMKSQG 122
N+ I+ LD + ++GN++ + K++ ++++E ++ L+ + +R
Sbjct: 223 NVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR 282
Query: 123 MSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGL 182
+K KA + L ++ +KR +E E+ YI P P L V+
Sbjct: 283 QAKSKARLARYEELLSQEFQKR------NETAEI------YI-----PPGPRLGDKVIEA 325
Query: 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+++ G+ G K+L++ ++F L P GI
Sbjct: 326 ENLSKGF-GDKLLIDDLSFKLP---------PGGI------------------------- 350
Query: 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 302
V ++GPNG GKST ++ G+ P+ G ++ +++ DQ S + L P+
Sbjct: 351 ---------VGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ-SRDALDPN 400
Query: 303 DTPCEY------LMKLFNLPYE-KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
T E +++L E SR +G F + LSGG++ RV LA+
Sbjct: 401 KTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKT 457
Score = 72.3 bits (178), Expect = 6e-14
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVV 61
Q+K + SGG R RV LA+ L +LLLDEPTN LD+ + L+ L + +V+
Sbjct: 437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVI 496
Query: 62 SHDQSFLNNICTDIIHLDMK-KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIR 116
SHD+ FL+ I T I+ + + +++GN++ Y + +K E Q +I+
Sbjct: 497 SHDRWFLDRIATHILAFEGDSHVEWFEGNYS----EYEEDKKRRLGEDADQPHRIK 548
Score = 36.1 bits (84), Expect = 0.025
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
++ ++G NG GKST L ++ G GE R +P +++G Q
Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQ 75
Score = 34.1 bits (79), Expect = 0.11
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
++ V+ P K +L+ ++ +++ ++G NG GKST L ++ G
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53
Score = 29.1 bits (66), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 337 PIRDLSGGQKARVALAELTL 356
+ LSGG++ RVAL L L
Sbjct: 158 DVTKLSGGERRRVALCRLLL 177
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 133 bits (338), Expect = 9e-35
Identities = 105/392 (26%), Positives = 167/392 (42%), Gaps = 124/392 (31%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVS 62
+ + SGGW + +L RAL P +LLLDEPTNHLD+ + WL+ +L+T++ +++ +S
Sbjct: 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFIS 210
Query: 63 HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQ----------- 111
HD+SF+ N+ T I+ LD KL Y GN+ Y+ +++E + ELQ
Sbjct: 211 HDRSFIRNMATRIVDLDRGKLVSYPGNYDQ----YLLEKEEALRVEELQNAEFDRKLAQE 266
Query: 112 EKQIREMKSQGMSKEKAERQHSH------KALKEQARKR--------VQKDDDDEPKELL 157
E IR QG+ KA R + KAL+ + +R +Q ++ ++
Sbjct: 267 EVWIR----QGI---KARRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASRSGKI- 318
Query: 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGI 217
V + +V + GK L++ + + ++AL+GPNG
Sbjct: 319 ---------------------VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGC 356
Query: 218 GKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277
GK+T L L+ G+L + G++
Sbjct: 357 GKTTLLKLMLGQLQADSGRI---------------------------------------- 376
Query: 278 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK--------SRRQLG---- 325
+L + FDQH E L P+ T + NL K R LG
Sbjct: 377 ---HCGTKLEVAYFDQHRAE-LDPEKTVMD------NLAEGKQEVMVNGRPRHVLGYLQD 426
Query: 326 -MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
+F P A T P++ LSGG++ R+ LA L L
Sbjct: 427 FLFH-PKRAMT-PVKALSGGERNRLLLARLFL 456
Score = 63.8 bits (156), Expect = 5e-11
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 7 KEFSGGWRIRVSLARALFLEPT-LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQ 65
K SGG R R+ LAR LFL+P+ LL+LDEPTN LD+ + L+ L +++ T+L+VSHD+
Sbjct: 439 KALSGGERNRLLLAR-LFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497
Query: 66 SFLNNICTD 74
F++N T+
Sbjct: 498 QFVDNTVTE 506
Score = 41.1 bits (97), Expect = 7e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
LL+ ++ RV LVG NG GKST + +L GE+ + G+++ E+
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64
Score = 38.8 bits (91), Expect = 0.004
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
LL+ ++ RV LVG NG GKST + +L GE+ + G +
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 124 bits (313), Expect = 1e-34
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
SGG ++R++LA+ L P LLLLDEPTNHLDL ++ L+ L+ + T+++VSHD+ FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 69 NNICTDIIHLD 79
+ + T II L+
Sbjct: 131 DQVATKIIELE 141
Score = 82.5 bits (205), Expect = 3e-19
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 47/122 (38%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
GK+LL+ ++ ++ R+ LVG NG GKST L L+ GEL P++G + ++IG F+Q
Sbjct: 12 GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ- 70
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
LSGG+K R+ALA+L
Sbjct: 71 ----------------------------------------------LSGGEKMRLALAKL 84
Query: 355 TL 356
L
Sbjct: 85 LL 86
Score = 74.0 bits (183), Expect = 4e-16
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L +++ Y GGK+LL+ ++ ++ R+ LVG NG GKST L L+ GEL P++G V
Sbjct: 3 LENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 129 bits (328), Expect = 2e-33
Identities = 107/373 (28%), Positives = 166/373 (44%), Gaps = 103/373 (27%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
SGG R RV+L R L +P +LLLDEPTNHLD +V WL+ +L + T++ V+HD+ FL+
Sbjct: 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLD 224
Query: 70 NICTDIIHLDMKKLFYYKGNFT--LFKKMYVQKRKELTKEYELQEKQIREMKSQ-GMSKE 126
N+ I+ LD + ++GN++ L QK K L +EKQ E Q + +E
Sbjct: 225 NVAGWILELDRGRGIPWEGNYSSWL-----EQKAKRL----AQEEKQ--EAARQKALKRE 273
Query: 127 --------KAERQHSHKA--------LKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP 170
KA RQ KA L E+ +KR +E E+ +I P
Sbjct: 274 LEWVRQSPKA-RQAKSKARLARYEELLSEEYQKR------NETNEI------FI-----P 315
Query: 171 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
P L V+ +++ + G ++L++ ++F L P GI
Sbjct: 316 PGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLP---------PGGI------------- 352
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
V ++GPNG GKST ++ G+ P+ G ++ +++
Sbjct: 353 ---------------------VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAY 391
Query: 291 FDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQLGMFGLPSYAHTIPIRDLSG 343
DQ S + L P+ T E ++K+ N E SR +G F + LSG
Sbjct: 392 VDQ-SRDALDPNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSG 448
Query: 344 GQKARVALAELTL 356
G++ R+ LA TL
Sbjct: 449 GERNRLHLA-KTL 460
Score = 68.2 bits (168), Expect = 2e-12
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVV 61
Q+K SGG R R+ LA+ L +LLLDEPTN LD+ + L+ L + +V+
Sbjct: 439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVI 498
Query: 62 SHDQSFLNNICTDIIHL-DMKKLFYYKGNFT 91
SHD+ FL+ I T I+ ++ +++GNF
Sbjct: 499 SHDRWFLDRIATHILAFEGDSQVEWFEGNFQ 529
Score = 36.6 bits (86), Expect = 0.016
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 289
++G NG GKST L ++ G +GE R +P +++G
Sbjct: 38 VLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG 73
Score = 33.2 bits (77), Expect = 0.20
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
++ V+ P K +L+ ++ +++ ++G NG GKST L ++ G +G+
Sbjct: 9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66
Score = 29.3 bits (67), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 337 PIRDLSGGQKARVALAELTL 356
+ LSGG++ RVAL L L
Sbjct: 160 KVTKLSGGERRRVALCRLLL 179
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 80.8 bits (200), Expect = 2e-18
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHD 64
+ SGG R RV+LARAL L P LLLLDEPT+ LD + L L+ + T+++V+HD
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 65 QSFLNNICTDIIHLD 79
+I L
Sbjct: 140 PELAELAADRVIVLK 154
Score = 61.1 bits (149), Expect = 2e-11
Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 36/119 (30%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
G+ L+ V+ L VALVGPNG GKST L + G L P GE+ I D
Sbjct: 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL------IDGKD- 62
Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ LP E+ RR++G + LSGGQ+ RVALA
Sbjct: 63 ------------------IAKLPLEELRRRIGY-----------VPQLSGGQRQRVALA 92
Score = 59.2 bits (144), Expect = 1e-10
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+ +++F Y G L V+ L VALVGPNG GKST L + G L P G++L++
Sbjct: 2 IENLSFRYGGRTALDN-VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 242 VNFG 245
+
Sbjct: 61 KDIA 64
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 76.6 bits (189), Expect = 8e-16
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 43/183 (23%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
V+ + ++T Y G K L+ V+F ++ L+GPNG GK+T L +L G L P G++
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
L+ G D+ ++R+ RIG Q
Sbjct: 63 LV----LGYDV-------------------------VKEPAKVRR----RIGYVPQEP-- 87
Query: 298 HLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
L+P+ T E L +L+ L E++ + L +FGL A+ +R LSGG K R++
Sbjct: 88 SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANK-KVRTLSGGMKQRLS 146
Query: 351 LAE 353
+A
Sbjct: 147 IAL 149
Score = 65.8 bits (161), Expect = 4e-12
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVS 62
+ SGG + R+S+A AL +P LL+LDEPT+ LD + + L+ K T+L+ +
Sbjct: 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLST 194
Query: 63 HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
H +C +I L+ K+ G K+ + K + L+ ++ E
Sbjct: 195 HILEEAEELCDRVIILNDGKIIAE-GTPEELKEKFGGKGVIELEPERLELAELLEGLKLV 253
Query: 123 MSKEK 127
+E+
Sbjct: 254 KGEEE 258
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 73.7 bits (182), Expect = 3e-15
Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 42/179 (23%)
Query: 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
L +++F YP G + L+ ++ + V +VGPNG GKST L LL G L P G+VL++
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
GK LK ELR+ ++G Q+ + F
Sbjct: 62 --------------------GKDLTKLSLK--------ELRR----KVGLVFQNP-DDQF 88
Query: 301 PDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T E + ++ LP E+ + L + GL LSGGQK RVA+A
Sbjct: 89 FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIA 146
Score = 68.3 bits (168), Expect = 2e-13
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KT 57
++++S SGG + RV++A L ++P +LLLDEPT LD L L+ K KT
Sbjct: 127 LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKT 186
Query: 58 LLVVSHDQSFLNNICTDIIHLD 79
+++V+HD L + +I L+
Sbjct: 187 IIIVTHDLDLLLELADRVIVLE 208
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 72.3 bits (178), Expect = 1e-14
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK----TLLVV 61
E SGG R R+++ARAL EP LL+LDEPT+ LD + A I N L KK T L +
Sbjct: 141 ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL--NLLLELKKERGLTYLFI 198
Query: 62 SHDQSFLNNICTDIIHLD 79
SHD + + ++C I +D
Sbjct: 199 SHDLALVEHMCDRIAVMD 216
Score = 49.2 bits (118), Expect = 8e-07
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----KSPRLRI 288
L V+ ++ + +VG +G GKST LL G P+ G + +
Sbjct: 17 KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR 76
Query: 289 GKFD--------QHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQ----LGMFGLP-SYAH 334
K Q L P T L + L KS+++ L GLP S+
Sbjct: 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD 136
Query: 335 TIPIRDLSGGQKARVALA 352
P +LSGGQ+ R+A+A
Sbjct: 137 RRP-HELSGGQRQRIAIA 153
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 72.2 bits (178), Expect = 2e-14
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 56/197 (28%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
P+L + ++ + GG + V+ + V L+GPNG GK+T NL+ G P+ G
Sbjct: 1 TTPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59
Query: 236 KVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
V+ + GL L GI + TF Q
Sbjct: 60 TVIFRGRDITGLPPHRIARL----GIAR-TF---------------------------QI 87
Query: 295 SGEHLFPDDTPCEYLM----------KLFNLP---------YEKSRRQLGMFGLPSYAHT 335
+ LFP T E + L P E++R L GL A
Sbjct: 88 T--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR 145
Query: 336 IPIRDLSGGQKARVALA 352
P +LS GQ+ R+ +A
Sbjct: 146 -PAGNLSYGQQRRLEIA 161
Score = 51.4 bits (124), Expect = 1e-07
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKK----TLLV 60
S G + R+ +ARAL +P LLLLDEP N + + ++ + T+L+
Sbjct: 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA---ELIRELRDRGGVTILL 205
Query: 61 VSHDQSFLNNICTDIIHLDM-KKLF 84
+ HD + + I+ L+ + +
Sbjct: 206 IEHDMKLVMGLADRIVVLNYGEVIA 230
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 69.7 bits (172), Expect = 2e-14
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
+ SGG + R++LA+AL +P LL+LDEPT+ LD + L+ K KT+L+ SH
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 65 QSFLNNICTDIIHLD 79
+C + L+
Sbjct: 155 LEEAERLCDRVAILN 169
Score = 54.7 bits (133), Expect = 5e-09
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 42/129 (32%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KS 283
K L+ ++ ++ L+GPNG GK+T + ++ G L P+ GE++ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE 70
Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 343
+ RIG + L+ + T E L LSG
Sbjct: 71 VKRRIGYLPEEPS--LYENLTVRENL------------------------------KLSG 98
Query: 344 GQKARVALA 352
G K R+ALA
Sbjct: 99 GMKQRLALA 107
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 69.8 bits (172), Expect = 3e-14
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK----KTL 58
++ E SGG R RV LARAL EP +LLLDEPT+HLD+ I L L+ KT+
Sbjct: 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV 151
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKLFYY 86
++V HD + +I L ++
Sbjct: 152 VMVLHDLNLAARYADRVILLKDGRIVAQ 179
Score = 65.1 bits (160), Expect = 1e-12
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ +++ GY GG+ +L+ ++ ++ V ++GPNG GKST L L G L P+ G++LL
Sbjct: 2 VENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Score = 60.5 bits (148), Expect = 5e-11
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 33/125 (26%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
G+ +L+ ++ ++ V ++GPNG GKST L L G L P+ GE+ D
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI---------LLDGK 61
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG-------MFGLPSYAHTIPIRDLSGGQKA 347
L +L ++ R++ + GL A P +LSGG++
Sbjct: 62 D----------------LASLSPKELARKIAYVPQALELLGLAHLADR-PFNELSGGERQ 104
Query: 348 RVALA 352
RV LA
Sbjct: 105 RVLLA 109
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 69.3 bits (171), Expect = 3e-14
Identities = 43/174 (24%), Positives = 62/174 (35%), Gaps = 71/174 (40%)
Query: 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+V+F YPG K +L+ V+ + +VA+VGP+G GKST L LL P G++L+
Sbjct: 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI- 61
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
+G+ + LRK I Q LF
Sbjct: 62 -----------------DGVDLRDL----------DLESLRK----NIAYVPQDP--FLF 88
Query: 301 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--LSGGQKARVALA 352
T IR+ LSGGQ+ R+A+A
Sbjct: 89 -SGT---------------------------------IRENILSGGQRQRIAIA 108
Score = 59.3 bits (145), Expect = 1e-10
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTW--KKTLLVVSHDQ 65
SGG R R+++ARAL +P +L+LDE T+ LD + L+ L+ KT++V++H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA-LRALAKGKTVIVIAHRL 155
Query: 66 SFLNNICTDIIHLD 79
S + + II LD
Sbjct: 156 STIRD-ADRIIVLD 168
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 71.1 bits (175), Expect = 4e-14
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL 286
+ +LE ++ ++ AL+GPNG GKST L + G L P+ GE++ + RL
Sbjct: 16 NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75
Query: 287 RIGKFDQHSG-EHLFP---DDT---PCEYLMKLFNLPYEKSRR-------QLGMFGLPSY 332
RIG Q S + FP D F +K + ++GM
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED---L 132
Query: 333 AHTIPIRDLSGGQKARVALA 352
I +LSGGQK RV LA
Sbjct: 133 RDR-QIGELSGGQKQRVLLA 151
Score = 65.7 bits (161), Expect = 3e-12
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
E SGG + RV LARAL P LLLLDEP +D+ + + L+ + KT+L+V+HD
Sbjct: 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198
Query: 65 QSFLNNICTDIIHLDMKKLFYY 86
+ +I L+ + L
Sbjct: 199 LGLVMAYFDRVICLN-RHLIAS 219
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 70.0 bits (172), Expect = 6e-14
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 40/176 (22%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+++F YPG K L+ V+ ++ RV L+GPNG GKST L LL G L P G+VL++
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD--- 64
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
G T + ELR+ ++G Q+ + LF
Sbjct: 65 -----------------GLDTSSEK-------SLLELRQ----KVGLVFQNPDDQLF-GP 95
Query: 304 TPCEYLM-KLFNLPYEKS------RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + + L NL + L + GL P +LSGGQK RVA+A
Sbjct: 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIA 150
Score = 62.3 bits (152), Expect = 3e-11
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW----LDNYLQTWKKT 57
++ SGG + RV++A L + P +LLLDEPT LD L + KT
Sbjct: 132 LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT 191
Query: 58 LLVVSHDQSFLNNICTDIIHLD 79
+++V+HD + ++ LD
Sbjct: 192 IIIVTHDLELVLEYADRVVVLD 213
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 70.3 bits (173), Expect = 7e-14
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 288
G +LE +N ++ VA++GP+G GKST L L+ G P GE+ P I
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74
Query: 289 G-KFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 340
G F + + L P T E K E+++ L + GL + P
Sbjct: 75 GYVFQEDA---LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-HQ 130
Query: 341 LSGGQKARVALA 352
LSGG + RVA+A
Sbjct: 131 LSGGMRQRVAIA 142
Score = 59.5 bits (145), Expect = 3e-10
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTW---KKTLLVVS 62
+ SGG R RV++ARAL P LLLLDEP LD L D L+ W +KT+L+V+
Sbjct: 129 HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188
Query: 63 HD 64
HD
Sbjct: 189 HD 190
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 72.2 bits (178), Expect = 7e-14
Identities = 85/368 (23%), Positives = 136/368 (36%), Gaps = 103/368 (27%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLV 60
+ SGG R RV +A AL L+P LL+ DEPT LD L+ + L L +L
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM---AVLF 210
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK-QIREMK 119
++HD + + ++ + YKG E+ E E+
Sbjct: 211 ITHDLGVVAELADRVVVM-------YKG--------------------EIVETGPTEEIL 243
Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 179
S + L ++ R+ + + LL R + R+ + L
Sbjct: 244 SNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLS-VRN--LSKRYGSRKGL---- 296
Query: 180 LGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
F G+V ++ V+F L + LVG +G GKST +L G L P+ G ++
Sbjct: 297 -------FVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349
Query: 239 LEKVNFGL------DMESRVALV--------GPNGIGKSTFLNLLKGELTPNKGELRKSP 284
+ + L + R+ +V P + T ++L L + G
Sbjct: 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP----RMTVGDILAEPLRIHGGGSGAER 405
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 344
R R+ + L++L LP E L Y H +LSGG
Sbjct: 406 RARVAE------------------LLELVGLPPE---------FLDRYPH-----ELSGG 433
Query: 345 QKARVALA 352
Q+ RVA+A
Sbjct: 434 QRQRVAIA 441
Score = 63.7 bits (156), Expect = 4e-11
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVI-WLDNYLQTWKKTLLVVSH 63
E SGG R RV++ARAL LEP LL+LDEP + LD V+ L + + T L +SH
Sbjct: 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488
Query: 64 DQSFLNNICTDII 76
D + + I +
Sbjct: 489 DLAVVRYIADRVA 501
Score = 45.3 bits (108), Expect = 3e-05
Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 48/193 (24%)
Query: 178 PVLGLHD--VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN- 233
P+L + + V F GG+V + V+F ++ + +VG +G GKST L G L
Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63
Query: 234 ---KGKVLLEKVN-FGLDMESRVALVGPNGIG---KSTFLNLLKGELTPNKGELRKSPRL 286
G+V+L+ + GL L G I + +L +P +
Sbjct: 64 RITSGEVILDGRDLLGLSEREMRKLRGKR-IAMIFQDPMTSL--------------NPVM 108
Query: 287 RIGKFDQ-------HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339
IG DQ H L++ LP + R + Y H
Sbjct: 109 TIG--DQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDR--------YPH----- 153
Query: 340 DLSGGQKARVALA 352
LSGG + RV +A
Sbjct: 154 QLSGGMRQRVMIA 166
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 69.4 bits (171), Expect = 1e-13
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 27/167 (16%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF-GLDME 249
GG V L+ V+F + L+GPNG GK+T NL+ G L P G VL + + GL
Sbjct: 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH 70
Query: 250 SRVALVGPNGIGKSTF--LNLLKGELTP--NKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
L GIG+ TF L ELT N + + Q
Sbjct: 71 EIARL----GIGR-TFQIPRLF-PELTVLEN---------VMVAA--QARTGSGLLLARA 113
Query: 306 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ E++ L GL A P +LS GQ+ R+ +A
Sbjct: 114 RREEREA----RERAEELLERVGLADLADR-PAGELSYGQQRRLEIA 155
Score = 51.3 bits (124), Expect = 1e-07
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKKTLLVVSHD 64
E S G + R+ +ARAL +P LLLLDEP N + + L L+ T+L+V HD
Sbjct: 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202
Query: 65 QSFLNNICTDIIHLD 79
+ ++ + LD
Sbjct: 203 MDVVMSLADRVTVLD 217
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 68.7 bits (169), Expect = 1e-13
Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRI 288
G +LE V+F + +A+VGPNG GKST L + G L P G +R R RI
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 289 GKFDQHSG-EHLFPDD------TPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTI 336
G Q + FP LF K+ + L GL A
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF-RRLSKADKAKVDEALERVGLSELADR- 128
Query: 337 PIRDLSGGQKARVALA 352
I +LSGGQ+ RV LA
Sbjct: 129 QIGELSGGQQQRVLLA 144
Score = 66.4 bits (163), Expect = 9e-13
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
E SGG + RV LARAL +P LLLLDEP +D + L+ + T+LVV+HD
Sbjct: 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191
Query: 65 QSFLNNICTDIIHLDMKKLFY 85
+ ++ L+ +
Sbjct: 192 LGLVLEYFDRVLLLNRTVVAS 212
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 67.2 bits (165), Expect = 2e-13
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQ 65
SGG + RV+LARAL ++P +LLLDEPT+ LD + L++ T+++V+HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 66 SFLNNICTDIIHLD 79
+ ++ L
Sbjct: 162 DEAARLADRVVVLR 175
Score = 56.8 bits (138), Expect = 1e-09
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 29/125 (23%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLR 287
K +L V+ ++ VAL+GP+G GKST L + G P+ G +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 288 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
+ + G + + F L + + G LSGGQ+
Sbjct: 71 LPPLRRRIG-----------MVFQDFALFPHLTVLENIALG------------LSGGQQQ 107
Query: 348 RVALA 352
RVALA
Sbjct: 108 RVALA 112
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 67.9 bits (167), Expect = 3e-13
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 41/179 (22%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
L +T + GG+ +L+ V+ + +A++GP+G GKST L L+ G L P+ G+VL++
Sbjct: 3 LRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
+ E+ EL + R R+G Q LF
Sbjct: 62 EDISGLSEA----------------------------ELYRL-RRRMGMLFQSGA--LFD 90
Query: 302 DDTPCE----YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T E L + L E+ R L GL P +LSGG K RVALA
Sbjct: 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALA 148
Score = 59.4 bits (145), Expect = 3e-10
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
E SGG + RV+LARAL L+P LLL DEPT LD A +D+ +++ KK L ++V+H
Sbjct: 136 ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195
Query: 64 DQSFLNNICTDIIHLDMKKL 83
D I I L K+
Sbjct: 196 DLDTAFAIADRIAVLYDGKI 215
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 67.5 bits (166), Expect = 4e-13
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------R 281
K ++ ++ + L+G NG GK+T L +L GEL P G R
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYA 333
K+ R +G Q LF + T E+L + + + L + GL A
Sbjct: 71 KAARQSLGYCPQFDA--LFDELTVREHLR-FYARLKGLPKSEIKEEVELLLRVLGLTDKA 127
Query: 334 HTIPIRDLSGGQKARVALA 352
+ R LSGG K +++LA
Sbjct: 128 NK-RARTLSGGMKRKLSLA 145
Score = 42.5 bits (101), Expect = 1e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIWLDNYLQTWKK--T 57
K + SGG + ++SLA AL P++LLLDEPT+ LD + IW + + +K +
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW--DLILEVRKGRS 184
Query: 58 LLVVSHDQSFLNNICTDI 75
+++ +H +C I
Sbjct: 185 IILTTHSMDEAEALCDRI 202
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 66.5 bits (163), Expect = 9e-13
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 41/177 (23%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+V+ YPGG+ L V+F + V L GP+G GKST L L+ GE P +GK+L+
Sbjct: 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV---- 61
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK-FDQHSGEHLFPD 302
G D L+ LKG P LR+ +IG F L PD
Sbjct: 62 NGHD------------------LSRLKGREIP---FLRR----QIGVVFQDF---RLLPD 93
Query: 303 DTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T E +++ P + RR+ L + GL A +P LSGG++ RVA+A
Sbjct: 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIA 149
Score = 44.1 bits (105), Expect = 4e-05
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW-LDNYLQTWKK---TLLVVSH 63
+ SGG + RV++ARA+ +P +LL DEPT +LD + W + + + T+L+ +H
Sbjct: 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD-PDLSWEIMRLFEEINRLGTTVLMATH 195
Query: 64 DQSFLNNICTDIIHLDMKKLFYYKG 88
D +N + ++ L+ +L +
Sbjct: 196 DLELVNRMRHRVLALEDGRLVRDES 220
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 68.5 bits (168), Expect = 1e-12
Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 58/192 (30%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P L L D++ GYPG +L+ V+ L RVA++GP+G GKST L L G L P +G+V
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
L +G+ S+ ++ E+R+ R+ Q +
Sbjct: 393 TL------------------DGVPVSSL----------DQDEVRR----RVSVCAQDA-- 418
Query: 298 HLF------------PDDTPCEYLMKLFNLPYEKSRRQLGMF--GLPSYAHTIPIRD--- 340
HLF PD T E L R L + LP T+
Sbjct: 419 HLFDTTVRENLRLARPDATDEELWAAL-------ERVGLADWLRALPDGLDTVLGEGGAR 471
Query: 341 LSGGQKARVALA 352
LSGG++ R+ALA
Sbjct: 472 LSGGERQRLALA 483
Score = 52.7 bits (127), Expect = 1e-07
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 18/66 (27%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----------LNAVIWLDNYLQTWKKTL 58
SGG R R++LARAL + +LLLDEPT HLD L A +T+
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--------LSGRTV 523
Query: 59 LVVSHD 64
++++H
Sbjct: 524 VLITHH 529
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 65.7 bits (161), Expect = 1e-12
Identities = 45/173 (26%), Positives = 65/173 (37%), Gaps = 38/173 (21%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+ +++F Y G +L+ ++ L +AL G NG GK+T +L G + + G +LL
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
E RKS IG Q LF
Sbjct: 62 KPI-------------------------------KAKERRKS----IGYVMQDVDYQLFT 86
Query: 302 DDTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
D E L+ L L E++ L L + P LSGGQK R+A+A
Sbjct: 87 DSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-LSLSGGQKQRLAIA 138
Score = 56.5 bits (137), Expect = 2e-09
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKT 57
++E+ SGG + R+++A AL LL+ DEPT+ LD + V L L K
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 58 LLVVSHDQSFLNNICTDIIHLD 79
++V++HD FL +C ++ L
Sbjct: 179 VIVITHDYEFLAKVCDRVLLLA 200
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 66.8 bits (164), Expect = 1e-12
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 49/187 (26%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+L + +++FGY GGK +L+ ++F + ++GPNG GKST L L G L P G+V
Sbjct: 1 MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
LL+ GK L+P EL K ++ Q
Sbjct: 60 LLD--------------------GKDIA------SLSPK--ELAK----KLAYVPQ---S 84
Query: 298 HLFPDDTPCEYL--------MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
P L + LF P ++ L + GL A P+ +LSGG+
Sbjct: 85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSGGE 143
Query: 346 KARVALA 352
+ RV +A
Sbjct: 144 RQRVLIA 150
Score = 62.2 bits (152), Expect = 4e-11
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTL 58
++ E SGG R RV +ARAL E +LLLDEPT+HLD+ I + L + T+
Sbjct: 133 DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKLFYY 86
++V HD + +I L K+
Sbjct: 193 VMVLHDLNLAARYADHLILLKDGKIVAQ 220
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 65.7 bits (161), Expect = 3e-12
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 47/190 (24%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
++ + +++ YPGG L+ VN ++ VA++GP+G GKST L L G + P G++
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
L G+ + ELRK R IG Q
Sbjct: 62 LFN----GVQITKL------------------------KGKELRKL-RRDIGMIFQQFN- 91
Query: 298 HLFPDDTPCEYLM-----------KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 342
L P + E ++ LF L ++ + Q L G+ A+ LS
Sbjct: 92 -LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLS 149
Query: 343 GGQKARVALA 352
GGQ+ RVA+A
Sbjct: 150 GGQQQRVAIA 159
Score = 51.1 bits (123), Expect = 2e-07
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYL----QTWKKTLLV 60
SGG + RV++ARAL +P ++L DEP LD +A +D L Q T++V
Sbjct: 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD-ILKDINQEDGITVIV 203
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYY 86
H II L ++ +
Sbjct: 204 NLHQVDLAKKYADRIIGLKAGRIVFD 229
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 64.4 bits (158), Expect = 4e-12
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 221 TFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
N+ K LE ++ ++ VALVGP+G GKST L ++ G P GE+
Sbjct: 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61
Query: 281 R------KSPRLRIG-KFDQHSGEHLFP-----DDTPCEYLMKLFNLPYEKSRRQ----L 324
P G F Q + L P D+ ++L +P ++R + L
Sbjct: 62 LVDGEPVTGPGPDRGYVFQQDA---LLPWLTVLDN--VALGLELQGVPKAEARERAEELL 116
Query: 325 GMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ GL + + P LSGG + RVALA
Sbjct: 117 ELVGLSGFENAYP-HQLSGGMRQRVALA 143
Score = 57.5 bits (140), Expect = 1e-09
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI------WLDNYLQTWKKTLLV 60
+ SGG R RV+LARAL ++P +LLLDEP + LD A+ L + + KT+L+
Sbjct: 130 HQLSGGMRQRVALARALAVDPDVLLLDEPFSALD--ALTREQLQEELLDIWRETGKTVLL 187
Query: 61 VSHD 64
V+HD
Sbjct: 188 VTHD 191
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 64.5 bits (158), Expect = 4e-12
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL 286
L+ ++ ++ +AL+GP+G GK+T L L+ G P+ GE+ P
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71
Query: 287 R-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 337
R IG F ++ LFP T E + +KL +P + R + L + GL + P
Sbjct: 72 RNIGMVFQDYA---LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP 128
Query: 338 IRDLSGGQKARVALA 352
+LSGGQ+ RVALA
Sbjct: 129 -HELSGGQQQRVALA 142
Score = 56.4 bits (137), Expect = 2e-09
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSH 63
E SGG + RV+LARAL EP+LLLLDEP + LD L L+ T + V+H
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189
Query: 64 DQS 66
DQ
Sbjct: 190 DQE 192
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 64.5 bits (158), Expect = 4e-12
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSF 67
SGG R V+LARAL +P +LLLDEPT+ +D+N+ L L+ KTL++++H S
Sbjct: 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL 201
Query: 68 LNNICTDIIHLD 79
L ++ II +D
Sbjct: 202 L-DLVDRIIVMD 212
Score = 52.2 bits (126), Expect = 7e-08
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 182 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+V+F YP ++ L+ V+ + +VA++G G GKST L LL G P G VLL+
Sbjct: 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64
Query: 241 KVN 243
+
Sbjct: 65 GTD 67
Score = 39.9 bits (94), Expect = 8e-04
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
PN+ L+ V+ + +VA++G G GKST L LL G P G +
Sbjct: 13 PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 66.3 bits (162), Expect = 6e-12
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 46/194 (23%)
Query: 170 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
P+P + +V+F YPG K +L+ ++F ++ +VA+VGP+G GKST + LL
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
Query: 230 LTPNKGKVLLEKVN----FGLDMESRVALVGPNGIGKSTFL-------NLLKGELTPNKG 278
P G++L++ ++ + R+ +V + L N+ G
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIV-----SQDPLLFSGTIRENIALGRPDATDE 433
Query: 279 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338
E+ ++ L++ + H F + NLP + +G G+
Sbjct: 434 EIEEA--LKL------ANAHEF-----------IANLP-DGYDTIVGERGVN-------- 465
Query: 339 RDLSGGQKARVALA 352
LSGGQ+ R+A+A
Sbjct: 466 --LSGGQRQRLAIA 477
Score = 52.4 bits (126), Expect = 2e-07
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN--AVIWLDNYLQTWKKTLLVVSHDQS 66
SGG R R+++ARAL P +L+LDE T+ LD A+I +T L+++H S
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 67 FLNNICTDIIHLDMKKLFYYKGNFT-------LFKKMY 97
+ N II LD ++ G L+ ++Y
Sbjct: 526 TIKN-ADRIIVLDNGRIVER-GTHEELLAKGGLYARLY 561
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 64.1 bits (156), Expect = 8e-12
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHDQS 66
SGG R RV +ARAL EP LLLLDEPTNHLD+ A + L L T++ HD +
Sbjct: 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198
Query: 67 FLNNICTDIIHLD 79
+ C ++ LD
Sbjct: 199 LAASYCDHVVVLD 211
Score = 51.0 bits (122), Expect = 2e-07
Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 37/128 (28%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLFP 301
L+GPNG GKST L LL G L P+ G + R++ R+ +Q S
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS-----D 85
Query: 302 DDTPCEYL--MKLFNLPY------------EKSRRQLGMFGLPSYAHTIPIRD---LSGG 344
P + L +P+ R L L A RD LSGG
Sbjct: 86 TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD----RDMSTLSGG 141
Query: 345 QKARVALA 352
++ RV +A
Sbjct: 142 ERQRVHVA 149
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 63.0 bits (154), Expect = 1e-11
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 39/178 (21%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
H+V+ YPGG L V+ + + L GP+G GK+T L LL G LTP++G+V +
Sbjct: 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-- 61
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
G D +N L+G P LR+ RIG Q L P
Sbjct: 62 --AGED------------------VNRLRGRQLP---LLRR----RIGVVFQDF--RLLP 92
Query: 302 DDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
D T E + +++ + +R+ L GL A P + LSGG++ RVA+A
Sbjct: 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ-LSGGEQQRVAIA 149
Score = 47.6 bits (114), Expect = 2e-06
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK------TLL 59
+ SGG + RV++ARA+ P LLL DEPT +LD L+ I L K+ T++
Sbjct: 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI-----LDLLKRLNKRGTTVI 191
Query: 60 VVSHDQSFLNNICTDIIHLDMKK 82
V +HD S ++ + +I LD +
Sbjct: 192 VATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 63.0 bits (154), Expect = 2e-11
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 45/187 (24%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ + +++ YP GK L+ V+ ++ VAL+GP+G GKST L L G + P G VL+
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 240 EKVNFGL-------DMESRVALV--GPNGIGKSTFL-NLLKGELTPNKGELRKSPRLRIG 289
+ + + ++ ++ N I + + L N+L G
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVL------------------SG 102
Query: 290 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
+ + S LF L ++ +++ L GL A+ LSGGQ
Sbjct: 103 RLGRRS------------TWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQ 149
Query: 346 KARVALA 352
+ RVA+A
Sbjct: 150 QQRVAIA 156
Score = 46.0 bits (110), Expect = 8e-06
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYL----QTWKKTL 58
+ + SGG + RV++ARAL +P L+L DEP LD ++ +D L + T+
Sbjct: 140 QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITV 198
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKLFYY 86
+V H I+ L ++ +
Sbjct: 199 IVSLHQVDLAREYADRIVGLKDGRIVFD 226
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 59.6 bits (145), Expect = 3e-11
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 263 STFLNLLKGELTPNKGEL------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
ST L L+ G L P G + RK R RIG Q LFP+ T E L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENLF 58
Query: 311 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
F L +++ + L GLP + P+ LSGGQK RVA+A
Sbjct: 59 --FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIA 102
Score = 57.3 bits (139), Expect = 2e-10
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTN 37
+ SGG + RV++ARAL +P LLLLDEPT
Sbjct: 86 EPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 62.6 bits (153), Expect = 4e-11
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 42/186 (22%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
P P++ + VT + G +V+L+ V+ + +A++G +G GKST L L+ G L P+KG
Sbjct: 5 PEPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
++L+ G D+ L + EL E+RK R+G Q
Sbjct: 64 EILI----DGEDIP-----------------QLSEEELY----EIRK----RMGVLFQQG 94
Query: 296 GEHLFPDDTPCE----YLMKLFNLPYEKSRRQ----LGMFGL-PSYAHTIPIRDLSGGQK 346
LF T E L + LP R L + GL + A P +LSGG +
Sbjct: 95 A--LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMR 151
Query: 347 ARVALA 352
RVALA
Sbjct: 152 KRVALA 157
Score = 59.9 bits (146), Expect = 2e-10
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
E SGG R RV+LARA+ L+P LL LDEPT+ LD + +D ++ L ++V+H
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204
Query: 64 DQSFLNNICTDIIHLDMKKL 83
D L I + L K+
Sbjct: 205 DLDSLLTIADRVAVLADGKV 224
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 61.4 bits (150), Expect = 4e-11
Identities = 46/165 (27%), Positives = 60/165 (36%), Gaps = 37/165 (22%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM-E 249
GG+VL ++F L + L GPNG GK+T L L+ G L P G + L+ +
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
+G N +K LT E+L E+
Sbjct: 73 EACHYLGH--------RNAMKPALT--------------------VAENL-------EFW 97
Query: 310 MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
L GL AH +P LS GQK RVALA L
Sbjct: 98 AAFLGGEELDIAAALEAVGLAPLAH-LPFGYLSAGQKRRVALARL 141
Score = 41.8 bits (99), Expect = 2e-04
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
S G + RV+LAR L + +LDEPT LD AV
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 63.7 bits (156), Expect = 4e-11
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQS 66
SGG R V+LARAL +P +LLLDEPT+ +D + + L+ W KTL++V+H S
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661
Query: 67 FLNNICTDIIHLD 79
L ++ II +D
Sbjct: 662 LL-DLVDRIIVMD 673
Score = 59.9 bits (146), Expect = 7e-10
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVL-G---LHDVTFGYPG-GKVLLEKVNFGLDMESRV 209
EL++ P E R +L P L G +V+F YPG L+ V+ + +V
Sbjct: 440 ELMQLPVE-----RPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKV 494
Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
A++G G GKST L LL G P +G VLL+ G+D+
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD----GVDI 529
Score = 42.9 bits (102), Expect = 2e-04
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
P + L+ V+ + +VA++G G GKST L LL G P +G +
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 61.4 bits (150), Expect = 6e-11
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVI-WLDNYLQTWKKTLLVVSH 63
E SGG + RV++ARAL P ++L DEPT +LD V+ L + KT+++V+H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 64 DQSFLNNICTDIIHL 78
D L +I L
Sbjct: 202 D-PELAKYADRVIEL 215
Score = 60.2 bits (147), Expect = 1e-10
Identities = 55/185 (29%), Positives = 76/185 (41%), Gaps = 42/185 (22%)
Query: 179 VLGLHDVTFGYPGGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
++ L +V+ Y G L+ VN ++ VA+VGP+G GKST LNLL G P G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK-FDQH 294
+VL+ G D+ L + EL +LR R +IG F
Sbjct: 61 EVLIN----GKDLT-----------------KLSEKELA----KLR---RKKIGFVFQNF 92
Query: 295 SGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
+L PD T P K + L + GL +LSGGQ+
Sbjct: 93 ---NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149
Query: 348 RVALA 352
RVA+A
Sbjct: 150 RVAIA 154
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 60.1 bits (146), Expect = 9e-11
Identities = 51/170 (30%), Positives = 68/170 (40%), Gaps = 37/170 (21%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
YPGG +L+ +NF + +AL+G NG GKST L L G L P G VL++
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLID-------- 52
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
G+ L ++ L + R R+G Q + LF D +
Sbjct: 53 ------------GE---------PLDYSRKGLLER-RQRVGLVFQDPDDQLFAADVDQDV 90
Query: 309 LMKLFNL---PYEKSRR---QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
NL E RR L G P LSGG+K RVA+A
Sbjct: 91 AFGPLNLGLSEAEVERRVREALTAVGASGLRER-PTHCLSGGEKKRVAIA 139
Score = 43.2 bits (102), Expect = 5e-05
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV---IWLDNYLQTWKKT 57
++E+ T SGG + RV++A A+ + P +LLLDEPT LD + + L+ T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 58 LLVVSHD 64
+++ +HD
Sbjct: 180 VVISTHD 186
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 60.6 bits (148), Expect = 1e-10
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 25/123 (20%)
Query: 251 RVALVGPNGIGKSTFL---NLL----------KGELTPNKGELRKSPRLRIGKFDQHSGE 297
V ++GP+G GKST L N L GE +K ++ K R ++G Q
Sbjct: 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL-RRKVGMVFQQF-- 86
Query: 298 HLFPDDTP----CEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
+LFP T +K+ L EK+ L GL A P + LSGGQ+ RV
Sbjct: 87 NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ-LSGGQQQRV 145
Query: 350 ALA 352
A+A
Sbjct: 146 AIA 148
Score = 53.3 bits (129), Expect = 3e-08
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHDQS 66
SGG + RV++ARAL ++P ++L DEPT+ LD + V+ + L T+++V+H+
Sbjct: 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197
Query: 67 FLNNICTDIIHLD 79
F + +I +D
Sbjct: 198 FAREVADRVIFMD 210
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 62.3 bits (152), Expect = 1e-10
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
P P L V+ YPG + L V+F + RVALVGP+G GKST LNLL G + P +
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 235 GKVLL 239
G + +
Sbjct: 377 GSIAV 381
Score = 56.1 bits (136), Expect = 1e-08
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-NAVIWLDNYLQTWK-KTLLVVSHD 64
SGG R++LARA + LLLLDEPT HLD L+ + +T+L+V+H
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
Score = 53.8 bits (130), Expect = 6e-08
Identities = 47/145 (32%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------- 281
P + L V+F + RVALVGP+G GKST LNLL G + P +G +
Sbjct: 332 PGRRPAL-RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD 390
Query: 282 -KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY---EKSRRQLGMFGLPSYAHTIP 337
S R +I QH LF T E + P + R L GL + +P
Sbjct: 391 ADSWRDQIAWVPQHP--FLFA-GTIAENI--RLARPDASDAEIREALERAGLDEFVAALP 445
Query: 338 I----------RDLSGGQKARVALA 352
LSGGQ R+ALA
Sbjct: 446 QGLDTPIGEGGAGLSGGQAQRLALA 470
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 59.5 bits (145), Expect = 2e-10
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLV 60
K K FS G + R+ +A AL P LL+LDEPTN LD + + L + + + T+L+
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFY 85
SH S + + I ++ KL
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKLIE 206
Score = 42.6 bits (101), Expect = 1e-04
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 38/164 (23%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME- 249
G K +L+ ++ + +GPNG GK+T + ++ G + P+ G++ + ++ ++E
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70
Query: 250 -SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
R+ G L ++P G + +
Sbjct: 71 LRRI-------------------------GALIEAP----GFYPNLTARENL------RL 95
Query: 309 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
L +L + ++ L + GL A ++ S G K R+ +A
Sbjct: 96 LARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIA 138
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 58.4 bits (142), Expect = 2e-10
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKKTLLVVS 62
SGG R R+ LARAL+ P +L+LDEP +HLD LN I L+ T +V++
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI---AALKAAGATRIVIA 153
Query: 63 H 63
H
Sbjct: 154 H 154
Score = 53.8 bits (130), Expect = 1e-08
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 180 LGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L + +V+F YPG + +L V+F ++ +A++GP+G GKST L+ G L P G+V
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 239 L 239
L
Sbjct: 61 L 61
Score = 49.1 bits (118), Expect = 4e-07
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 37/128 (28%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----KSPRLR 287
P +L V+F ++ +A++GP+G GKST L+ G L P G +R +
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 288 IGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 344
+ H G YL +LF + +I LSGG
Sbjct: 71 PNELGDHVG-----------YLPQDDELF-------------------SGSIAENILSGG 100
Query: 345 QKARVALA 352
Q+ R+ LA
Sbjct: 101 QRQRLGLA 108
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 59.3 bits (144), Expect = 2e-10
Identities = 47/176 (26%), Positives = 68/176 (38%), Gaps = 39/176 (22%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+VT YP G L+ +N + V LVGP+G GKST L L+ E P G + + +
Sbjct: 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
++ L+G P LR+ IG Q L PD
Sbjct: 65 ----------------------VSDLRGRAIP---YLRRK----IGVVFQDF--RLLPDR 93
Query: 304 TPCEYLMKLFNLPYEKSRR-------QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E + + R L + GL +P +LSGG++ RVA+A
Sbjct: 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-AELSGGEQQRVAIA 148
Score = 49.3 bits (118), Expect = 6e-07
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHD 64
E SGG + RV++ARA+ PT+L+ DEPT +LD ++ L + T++V +H
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
Query: 65 QSFLNN 70
+ ++
Sbjct: 196 KELVDT 201
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 61.3 bits (149), Expect = 2e-10
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 49/198 (24%)
Query: 170 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224
+P LP P+ G V F YP + L+ +N + VALVGP+G GKST
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384
Query: 225 LLKGELTPNKGKVLLEKVNFG----LDMESRVALV--GPNGIGKSTFLNLLKGELTPNKG 278
LL P G++LL+ V+ ++ +R+ALV P S N+ G
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444
Query: 279 ELRKSPRLRIGKFDQHSGEHL--FPD--DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH 334
E+ + R H+ E + P+ DT LG G+
Sbjct: 445 EVEAAARA------AHAHEFISALPEGYDTY------------------LGERGV----- 475
Query: 335 TIPIRDLSGGQKARVALA 352
LSGGQ+ R+A+A
Sbjct: 476 -----TLSGGQRQRIAIA 488
Score = 43.2 bits (102), Expect = 2e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARA+ + +LLLDE T+ LD
Sbjct: 478 SGGQRQRIAIARAILKDAPILLLDEATSALD 508
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 61.1 bits (149), Expect = 2e-10
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKK---TLLVV 61
EFSGG R R+++ARAL L+P L+LLDEPT+ LD + V+ L LQ +K + L +
Sbjct: 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ--QKHGLSYLFI 483
Query: 62 SHDQSFLNNICTDII 76
SHD + + +C +I
Sbjct: 484 SHDLAVVRALCHRVI 498
Score = 44.6 bits (106), Expect = 5e-05
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
E SGG R RV +A AL EP LL+ DEPT LD+ + + L+ + L L ++H
Sbjct: 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216
Query: 64 D 64
D
Sbjct: 217 D 217
Score = 29.6 bits (67), Expect = 3.0
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 170 PNPPYLPPPVLGLHDVTFGYPGGKVLLEK----------VNFGLDMESRVALVGPNGIGK 219
P P P +L + D+ +P L + ++ L + LVG +G GK
Sbjct: 267 PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326
Query: 220 STF-LNLLKGELTPNKGKV 237
ST L LL+ L P++G++
Sbjct: 327 STLGLALLR--LIPSQGEI 343
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 59.8 bits (146), Expect = 3e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
GG+ LL+ V+ L VA++GPNG GKST L L GEL+P+ G+V L
Sbjct: 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Score = 54.8 bits (133), Expect = 1e-08
Identities = 47/147 (31%), Positives = 59/147 (40%), Gaps = 43/147 (29%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
G+ LL+ V+ L VA++GPNG GKST L L GEL+P+ GE+R
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 286 L--RIGKFDQHSGEHL-FPDDTPCEYLMKLFN---------LPYEKSRRQ--------LG 325
L R QHS L FP F P+ SR + L
Sbjct: 74 LARRRAVLPQHS--SLSFP-----------FTVEEVVAMGRAPHGLSRAEDDALVAAALA 120
Query: 326 MFGLPSYAHTIPIRDLSGGQKARVALA 352
L A LSGG++ RV LA
Sbjct: 121 QVDLAHLAGR-DYPQLSGGEQQRVQLA 146
Score = 40.9 bits (97), Expect = 5e-04
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 8 EFSGGWRIRVSLARAL------FLEPTLLLLDEPTNHLDL 41
+ SGG + RV LAR L P LLLDEPT+ LDL
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 58.9 bits (143), Expect = 3e-10
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
++L E ++F L+ + + GPNGIGK+T L +L G L P+ GE+R + + +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT-ALAEQRDE 70
Query: 295 SGEHLF---------PDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRD 340
++ P+ + E L F ++ L GL + +P
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLH--FWAAIHGGAQRTIEDALAAVGLTGFED-LPAAQ 127
Query: 341 LSGGQKARVALAELTL 356
LS GQ+ R+ALA L L
Sbjct: 128 LSAGQQRRLALARLWL 143
Score = 36.6 bits (85), Expect = 0.009
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
S G + R++LAR L +LDEPT LD V
Sbjct: 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 59.0 bits (144), Expect = 3e-10
Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 43/180 (23%)
Query: 184 DVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+++ Y GG L+ V+ ++ VA+VGP+G GKST LN+L G P G+V ++
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK-FDQHSGEHL 299
+ L + EL R R IG F +L
Sbjct: 65 GTDI---------------------SKLSEKELA----AFR---RRHIGFVFQSF---NL 93
Query: 300 FPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
PD T P E++ L GL + P +LSGGQ+ RVA+A
Sbjct: 94 LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIA 152
Score = 54.4 bits (132), Expect = 1e-08
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-NAVIWLD---NYLQTWKKTLLVVSH 63
E SGG + RV++ARAL +P ++L DEPT +LD ++ + T++VV+H
Sbjct: 140 ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
Query: 64 DQSFLNNICTDIIHL 78
D L II L
Sbjct: 200 DPE-LAEYADRIIEL 213
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 61.2 bits (149), Expect = 3e-10
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 166 KFRFPNPPYLPPP-VLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 223
+ FP+ L L +V+F YPG + L+ N L +VA++G +G GKST L
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
Query: 224 NLLKGELTPNKGKVLLE 240
LL G P +G + L
Sbjct: 382 QLLAGAWDPQQGSITLN 398
Score = 51.6 bits (124), Expect = 3e-07
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 27/148 (18%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------- 281
P + L+ N L +VA++G +G GKST L LL G P +G +
Sbjct: 347 PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD 406
Query: 282 -KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPI 338
++ R I Q HLF T + L +L N E+ L GL + P
Sbjct: 407 EQALRETISVLTQRV--HLF-SGTLRDNL-RLANPDASDEELWAALQQVGLEKLLESAPD 462
Query: 339 ----------RDLSGGQKARVALAELTL 356
R LSGG++ R+ALA L
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALL 490
Score = 51.2 bits (123), Expect = 4e-07
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSHD 64
SGG R R++LARAL + L LLDEPT LD + L + + KTLL+V+H
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHR 532
Query: 65 QSFLNNICTDIIHLDMKKLFYYKGNFTL------FKKMY 97
L II LD K+ + L +K++Y
Sbjct: 533 LRGL-ERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 58.7 bits (142), Expect = 3e-10
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
G+ L ++F L + + GPNG GK+T L +L G P G + + + D
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 295 SGEHLFPDDTPC--EYLMKLFNLPY-------EKSRRQLGMFGLPSYAHTIPIRDLSGGQ 345
+ L+ P L L NL + E+ L GL + P+ LS GQ
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAGQ 130
Query: 346 KARVALAELTL 356
+ RVALA L L
Sbjct: 131 QRRVALARLLL 141
Score = 37.1 bits (86), Expect = 0.006
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
S G + RV+LAR L L +LDEPT LD V
Sbjct: 127 SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 58.0 bits (141), Expect = 7e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+V F Y K +L+ +NF + VA+VGP G GK+T +NLL P KG++L++ ++
Sbjct: 7 NVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66
Score = 49.5 bits (119), Expect = 6e-07
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------R 281
++ K +L+ +NF + VA+VGP G GK+T +NLL P KG++ R
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 282 KSPRLRIGKFDQHSGEHLFPDD 303
KS R IG Q + LF
Sbjct: 73 KSLRSMIGVVLQDT--FLFSGT 92
Score = 36.0 bits (84), Expect = 0.014
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
S G R +++ARA+ +P +L+LDE T+++D + L+ K T ++++H
Sbjct: 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 60.1 bits (146), Expect = 7e-10
Identities = 63/212 (29%), Positives = 86/212 (40%), Gaps = 51/212 (24%)
Query: 158 EKPREYI-VKFRFPNP-PYLPPPVLGL---HDVTFGYPG--GKVLLEKVNFGLDMESRVA 210
EK EY+ K P P + GL DV+F YP +L+ + F L VA
Sbjct: 452 EKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVA 511
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME--------SRVALVG--PNGI 260
LVGP+G GKST LL+ P G+VLL+ G+ + +VALVG P
Sbjct: 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLD----GVPLVQYDHHYLHRQVALVGQEPVLF 567
Query: 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 320
S N+ G L +P I + + H F +M+ N Y+
Sbjct: 568 SGSVRENIAYG--------LTDTPDEEIMAAAKAANAHDF--------IMEFPN-GYDTE 610
Query: 321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ G LSGGQK R+A+A
Sbjct: 611 VGEKGSQ-------------LSGGQKQRIAIA 629
Score = 44.3 bits (105), Expect = 7e-05
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
SGG + R+++ARAL +P +L+LDE T+ LD + LQ + T+L+++H
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAEC----EQLLQESRSRASRTVLLIAH 672
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 57.9 bits (141), Expect = 7e-10
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQT-WKKTLLVVSH 63
E SGG R RV++ARAL L P LL+ DEPT+ LD+ ++ L LQ TLL ++H
Sbjct: 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204
Query: 64 DQSFLNNICTDII 76
D + I +
Sbjct: 205 DLGVVAKIADRVA 217
Score = 45.2 bits (108), Expect = 2e-05
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 57/194 (29%)
Query: 179 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
+L + +++ +P G L+ V+F + + LVG +G GKST + G L P G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 236 KVLLEKVN-------FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI 288
++ + + + +V + + LN PR+ I
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSS---LN----------------PRMTI 101
Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----FGLPS-----YAHTIPI 338
GE + E L L +++R++ + GLP Y H
Sbjct: 102 -------GEQI------AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPH---- 144
Query: 339 RDLSGGQKARVALA 352
+LSGGQ+ RVA+A
Sbjct: 145 -ELSGGQRQRVAIA 157
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 58.1 bits (140), Expect = 1e-09
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTL 58
Q K SGG + RVS+ARAL +EP +LL DEPT+ LD + V+ + L KT+
Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKL 83
+VV+H+ F ++ + +I L K+
Sbjct: 206 VVVTHEMGFARHVSSHVIFLHQGKI 230
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 57.3 bits (139), Expect = 1e-09
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL-- 58
+ + + SGG + RV+LARAL +P LLLLDEP + LD + L L+ KK L
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 59 --LVVSHDQSFLNNICTDII 76
+ V+HD S + I+
Sbjct: 184 PVIFVTHDLSEAEYLADRIV 203
Score = 44.2 bits (105), Expect = 3e-05
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
K++F L+ E + G +G GKST L + G P+ G + + + FD +L
Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL---FDSRKKINLP 71
Query: 301 PDDTPCEYLMK---LF-------NLPY------EKSRRQ-----LGMFGLPSYAHTIPIR 339
P + + LF NL + + R L + GL +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-YPA 130
Query: 340 DLSGGQKARVALA 352
LSGG+K RVALA
Sbjct: 131 QLSGGEKQRVALA 143
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 58.5 bits (142), Expect = 1e-09
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVSHDQ 65
SGG R RV+LARAL +EP +LLLDEP LD + + WL T + V+HDQ
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198
Query: 66 SF 67
Sbjct: 199 EE 200
Score = 53.9 bits (130), Expect = 4e-08
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLR 287
L+ ++ + VAL+GP+G GKST L ++ G TP+ G + + R R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 288 -IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRR------QLGMFGLPSYAHTIP 337
+G QH LFP T + + +K+ ++ L + L A P
Sbjct: 78 KVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135
Query: 338 IRDLSGGQKARVALA 352
LSGGQ+ RVALA
Sbjct: 136 -AQLSGGQRQRVALA 149
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 58.8 bits (143), Expect = 2e-09
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
PP + L +++F YP GK L +N + ALVG +G GKST LNLL G L P +G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 236 KVLL 239
++ +
Sbjct: 377 EIRV 380
Score = 58.0 bits (141), Expect = 3e-09
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-NAVIWLDNYLQTWK-KTLLVVSHDQS 66
SGG R++LARAL +LLLLDEPT HLD I L + K KT+LV++H
Sbjct: 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516
Score = 56.5 bits (137), Expect = 8e-09
Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 44/150 (29%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------K 282
GK L +N + ALVG +G GKST LNLL G L P +GE+R +
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE 391
Query: 283 SPRLRIGKFDQHSGEHLFP---------------DDTPCE-----YLMKLFNLPYEKSRR 322
+ R +I Q+ +LF D+ L++ P +
Sbjct: 392 AWRKQISWVSQNP--YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP-DGLDT 448
Query: 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+G G LSGGQ R+ALA
Sbjct: 449 VIGEGG----------AGLSGGQAQRLALA 468
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 58.8 bits (143), Expect = 2e-09
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQS 66
SGG R R++LARAL +P +LLLDE T+ LD + L +T+++++H S
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669
Query: 67 FLNNICTDIIHLD 79
+ + II LD
Sbjct: 670 TIRS-ADRIIVLD 681
Score = 58.0 bits (141), Expect = 3e-09
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 42/207 (20%)
Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVG 213
++L+ P E + P L + +V+F Y P +LE ++ + +VA+VG
Sbjct: 448 DILDTPPEQEGDKTLIHLPKLQGEIE-FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVG 506
Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG-LDMES---RVALVGPNGI--GKSTFLN 267
+G GKST L LL G P +G++LL+ V+ +D+ S +V V + S N
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566
Query: 268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLG 325
+ G E+ ++ +L +G H F + NLP Y+ +G
Sbjct: 567 IALGNPEATDEEIIEAAQL--------AGAHEF-----------IENLPMGYD---TPVG 604
Query: 326 MFGLPSYAHTIPIRDLSGGQKARVALA 352
G +LSGGQ+ R+ALA
Sbjct: 605 EGGA----------NLSGGQRQRLALA 621
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 57.4 bits (139), Expect = 2e-09
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIGK 290
G+ LL+ V+ L +A++GPNG GKST L L GEL+P+ GE+ +
Sbjct: 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72
Query: 291 FDQHSGEHLFPDDTPCEY------LMKLFNLPYEKSRRQ----------LGMFGLPSYAH 334
+H + P ++ + ++++ +P+ R L L A
Sbjct: 73 LARHRA--VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA- 129
Query: 335 TIPIRDLSGGQKARVALA 352
R LSGG++ RV LA
Sbjct: 130 GRDYRTLSGGEQQRVQLA 147
Score = 56.2 bits (136), Expect = 4e-09
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
G+ LL+ V+ L +A++GPNG GKST L L GEL+P+ G+V L V
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP 64
Score = 40.4 bits (95), Expect = 6e-04
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 3 EKSTKEFSGGWRIRVSLARAL------FLEPTLLLLDEPTNHLDL 41
+ + SGG + RV LAR L L LDEPT+ LD+
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 58.6 bits (142), Expect = 2e-09
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVSH 63
EFSGG R R+++ARAL L+P+L++LDEPT+ LD + A I L + Q + L +SH
Sbjct: 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484
Query: 64 DQSFLNNICTDIIHL 78
D + +C +I L
Sbjct: 485 DLHVVRALCHQVIVL 499
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ SGG R RV +A AL P LL+ DEPT LD
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 56.2 bits (136), Expect = 3e-09
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
++ FS G R +V++ARAL +P +LLLDEPT LD+ A L +++ + K +L
Sbjct: 131 DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 60 VVSHDQSFLNNICTDII 76
+H + +C ++
Sbjct: 191 FSTHIMQEVERLCDRVV 207
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
V + V+F G+V L+GPNG GK+T L +L G L P+ G
Sbjct: 17 TVQAVDGVSFTVKPGEV--------------TGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62
Query: 238 LLE 240
++
Sbjct: 63 TVD 65
Score = 37.0 bits (86), Expect = 0.009
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------ELRKSP 284
K ++ V+F + L+GPNG GK+T L +L G L P+ G ++ K P
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP 73
Query: 285 ---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL-PYEKSRRQLGMFGLPSYAHTIP 337
R R+G L+ T E Y L+ L E + R + +
Sbjct: 74 AEARRRLGFVS--DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD 131
Query: 338 IR--DLSGGQKARVALA 352
R S G + +VA+A
Sbjct: 132 RRVGGFSTGMRQKVAIA 148
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 57.2 bits (138), Expect = 4e-09
Identities = 42/169 (24%), Positives = 64/169 (37%), Gaps = 38/169 (22%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES 250
GGK + + + ++G +G GKST + +L + P G++ ++ N +
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQ-- 60
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT---PCE 307
+ ELR+ R +IG Q LFP T
Sbjct: 61 -------------------------SPVELREVRRKKIGMVFQQFA--LFPHMTILQNTS 93
Query: 308 YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+L P EK+ L + GL Y H P +LSGG + RV LA
Sbjct: 94 LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSGGMQQRVGLA 141
Score = 44.1 bits (104), Expect = 7e-05
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKTLLVVSH 63
E SGG + RV LARAL EP +LL+DE + LD L D + T +KT++ ++H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 64 D 64
D
Sbjct: 189 D 189
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 55.2 bits (134), Expect = 5e-09
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGELR------KSPR 285
+L+ ++ + V ++GP+G GKST L NLL+ P+ G + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKLTDDK 68
Query: 286 LRIGKFDQHSGE-----HLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSY 332
I + Q G +LFP T E + K+ + E++ L GL
Sbjct: 69 KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK 128
Query: 333 AHTIPIRDLSGGQKARVALA 352
A P LSGGQ+ RVA+A
Sbjct: 129 ADAYP-AQLSGGQQQRVAIA 147
Score = 52.9 bits (128), Expect = 3e-08
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 1 MQEKSTK---EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTW 54
+ +K+ + SGG + RV++ARAL + P ++L DEPT+ LD + V+ + L
Sbjct: 125 LADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 55 KKTLLVVSHDQSFLNNICTDIIHLD 79
T++VV+H+ F + +I +D
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMD 209
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 55.8 bits (135), Expect = 5e-09
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSHDQ 65
SGG + RV++ARAL + P +LLLDEP + LD+ L L+ +K T+L V+HD
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 66 S 66
Sbjct: 191 E 191
Score = 40.8 bits (96), Expect = 5e-04
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIG 289
L+ V+ ++ ++GP G GKS L + G + P+ G++ + I
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 290 KFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLS 342
Q LFP T Y +K + ++ R++ M G+ + P LS
Sbjct: 75 YVPQ--NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-LS 131
Query: 343 GGQKARVALA 352
GG++ RVA+A
Sbjct: 132 GGEQQRVAIA 141
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
L+ V+ ++ ++GP G GKS L + G + P+ GK+LL
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 54.6 bits (132), Expect = 6e-09
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 180 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L +++V+F YP + +L+ ++ L ++AL+G +G GKST L LL G+L P +G++
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 239 LEKVN 243
L+ V
Sbjct: 61 LDGVP 65
Score = 45.0 bits (107), Expect = 1e-05
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 41/135 (30%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----------LR 281
P + + +L+ ++ L ++AL+G +G GKST L LL G+L P +GE L
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 341
K+ I +Q +LF D T R LG R
Sbjct: 71 KALSSLISVLNQRP--YLF-DTT---------------LRNNLG-------------RRF 99
Query: 342 SGGQKARVALAELTL 356
SGG++ R+ALA + L
Sbjct: 100 SGGERQRLALARILL 114
Score = 42.3 bits (100), Expect = 9e-05
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 12/64 (18%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLL 59
+ FSGG R R++LAR L + ++LLDEPT LD L+ + + KTL+
Sbjct: 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-----FEVLKDKTLI 151
Query: 60 VVSH 63
++H
Sbjct: 152 WITH 155
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 56.2 bits (136), Expect = 7e-09
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSHDQ 65
S G R+R LA AL P +L LDEPT LD+NA + +L + + T+L+ +H
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF 217
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
+ +C ++ +D +L + G ++ + KE + E
Sbjct: 218 DDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF-GPYKEFSVE 257
Score = 43.9 bits (104), Expect = 6e-05
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSGEH 298
++F + V +G NG GKST L +L G L P G++R K P R ++ + G
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 299 LF---------PDDTPCEYLMKLFNLPYEKSRRQLG----MFGLPSYAHTIPIRDLSGGQ 345
+ P E L ++ +P ++ +L + L + P+R LS GQ
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQ 161
Query: 346 KARVALA 352
+ R LA
Sbjct: 162 RMRAELA 168
Score = 41.6 bits (98), Expect = 3e-04
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
++F + V +G NG GKST L +L G L P GKV
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 54.9 bits (132), Expect = 8e-09
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 244 FGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLRIGKFDQ 293
F L++ VA++GP+G GKST LNL+ G + P G + +P R
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR--PVSM 74
Query: 294 HSGEH-LFPDDTPCEYL-------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 345
E+ LF T + + +KL EK G+ Y +P LSGGQ
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-EQLSGGQ 133
Query: 346 KARVALA 352
+ RVALA
Sbjct: 134 RQRVALA 140
Score = 42.9 bits (101), Expect = 8e-05
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSH 63
+ SGG R RV+LAR L +LLLDEP + LD + + ++TLL+V+H
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 64 DQSFLNNICTDII 76
S I + I
Sbjct: 188 HLSDARAIASQIA 200
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 55.1 bits (133), Expect = 9e-09
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
K + LE V+ + V ++GP+G GK+T LNL+ G +TP++G ++ + R RI
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR-RIEGP 72
Query: 292 DQHSG-----EHLFP-----DDTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIP 337
G E L P D+ + ++L + E + + L + GL H
Sbjct: 73 GAERGVVFQNEALLPWLNVIDNV--AFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI 130
Query: 338 IRDLSGGQKARVALA 352
LSGG + RV +A
Sbjct: 131 W-QLSGGMRQRVGIA 144
Score = 50.5 bits (121), Expect = 4e-07
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA-----VIWLDNYLQTWKKT 57
K + SGG R RV +ARAL +EP LLLLDEP LD + LD + +T K+
Sbjct: 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186
Query: 58 LLVVSHD 64
LL ++HD
Sbjct: 187 LL-ITHD 192
Score = 46.3 bits (110), Expect = 8e-06
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
+L + ++ Y G + LE V+ + V ++GP+G GK+T LNL+ G +TP++G
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 237 VLL 239
+ L
Sbjct: 62 IQL 64
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 56.4 bits (137), Expect = 1e-08
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVG 213
E+ E+ E V F + L L++V+F YP +L+ ++ + +VAL+G
Sbjct: 316 EITEQKPE--VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373
Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLL 239
G GKST L LL P +G++LL
Sbjct: 374 RTGCGKSTLLQLLTRAWDPQQGEILL 399
Score = 42.5 bits (101), Expect = 2e-04
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWK-KTLLVVSH 63
SGG + R+ +ARAL + LLLLDEPT LD A I L+ + + KT+L+++H
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLD--AETERQI-LELLAEHAQNKTVLMITH 532
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 55.2 bits (133), Expect = 1e-08
Identities = 49/177 (27%), Positives = 68/177 (38%), Gaps = 43/177 (24%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
D+ + Y G K L +NF SR+A++GPNG GKST G L P G V
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV------ 61
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
L++GE N E+RK +G Q+ + +F
Sbjct: 62 ------------------------LIRGEPITKENIREVRKF----VGLVFQNPDDQIFS 93
Query: 302 DDTPCEYLMKLFNLPYEKS------RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ NL ++ L M GL +P LSGG+K RVA+A
Sbjct: 94 PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-HHLSGGEKKRVAIA 149
Score = 37.5 bits (87), Expect = 0.007
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWKK 56
++++ SGG + RV++A + +EP +L+LDEPT LD V +L++ +T+
Sbjct: 130 LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGM 189
Query: 57 TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIR 116
T++ +H + + I +D ++ Y +F + + R L + K IR
Sbjct: 190 TVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHL--DLPSLPKLIR 247
Query: 117 EMKSQGMSKEKA 128
+++QG++ + A
Sbjct: 248 SLQAQGIAIDMA 259
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 55.6 bits (134), Expect = 1e-08
Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 45/178 (25%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
V FG +L+ V+ + S V LVGPNG GK+T L + G LTP G VL+
Sbjct: 10 SVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA--- 63
Query: 244 FGLDMES--------RVALVGPNGIGKSTFLNL-LKGELTPNKGELRKSPRLRIGKFDQH 294
G D+E+ RVA V P T L+ E+ ++P +FD
Sbjct: 64 -GDDVEALSARAASRRVASV-PQD----TSLSFEFDVRQVV---EMGRTPHR--SRFDTW 112
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ D R + G+ +A P+ LSGG++ RV LA
Sbjct: 113 T-----ETDR-------------AAVERAMERTGVAQFADR-PVTSLSGGERQRVLLA 151
Score = 49.5 bits (118), Expect = 1e-06
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN 42
++ SGG R RV LARAL +LLLDEPT LD+N
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 54.5 bits (132), Expect = 1e-08
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+VTF Y G+ +L+ V+F + +VA+VGP+G GKST L LL + G +L
Sbjct: 5 NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RV++ARA+ P +LLLDE T+ LD
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALD 169
Score = 39.9 bits (94), Expect = 0.001
Identities = 42/169 (24%), Positives = 58/169 (34%), Gaps = 71/169 (42%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------- 281
+ G+ +L+ V+F + +VA+VGP+G GKST L LL + G +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------------------------- 314
S R IG + P DT LFN
Sbjct: 71 DSLRRAIG---------VVPQDTV------LFNDTIGYNIRYGRPDATDEEVIEAAKAAQ 115
Query: 315 -------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
P + +G GL LSGG+K RVA+A L
Sbjct: 116 IHDKIMRFP-DGYDTIVGERGL----------KLSGGEKQRVAIARAIL 153
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 55.4 bits (134), Expect = 1e-08
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN----AVIWLDNYLQTWKK 56
++ + SGG + RV+LARAL EP +LLLDEP + LD L +
Sbjct: 129 FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188
Query: 57 TLLVVSHDQS 66
T + V+HDQ
Sbjct: 189 TFVYVTHDQE 198
Score = 52.3 bits (126), Expect = 1e-07
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
P P L + +V+ + G ++ ++ + V L+GP+G GK+T L ++ G P+ G
Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 236 KVLL-EKVNFGLDMESR-VALVGPNGIGKSTF--LNLLKG---ELTPNKGELRKSPRLRI 288
++LL + + E R + +V + + F + + + L K + + R+
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSY---ALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
E L + GL +A P LSGGQ+ R
Sbjct: 118 -----------------EEALELV---------------GLEGFADRKP-HQLSGGQQQR 144
Query: 349 VALA 352
VALA
Sbjct: 145 VALA 148
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 54.2 bits (131), Expect = 1e-08
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL----NAVIWLDNYLQTWKKTLL 59
+ + SGG + RV++ARAL EP +LLLDEP LDL + + L + T +
Sbjct: 126 RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFV 185
Query: 60 VVSHDQS 66
V+HDQ
Sbjct: 186 FVTHDQE 192
Score = 52.2 bits (126), Expect = 7e-08
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSPRLRIGKFD 292
G V L+ V+ + L+GP+G GK+T L L+ G TP GE L +
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK 71
Query: 293 QHSGE-----HLFPDDTPCE---YLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRD 340
+ LFP T E + ++L LP E+ L + L YA+ P
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-SQ 130
Query: 341 LSGGQKARVALA 352
LSGGQ+ RVA+A
Sbjct: 131 LSGGQQQRVAIA 142
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 55.4 bits (134), Expect = 2e-08
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHDQS 66
SGG R R++LARAL+ +P L++LDEP ++LD L N ++ K T++V++H S
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
Query: 67 FLNNICTDII 76
L C D I
Sbjct: 516 LLG--CVDKI 523
Score = 48.1 bits (115), Expect = 5e-06
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 161 REYIVKFRFPNPPY-LPPP--VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNG 216
E + + +P LP P L + +VT PGGK L ++F L +A++GP+G
Sbjct: 295 NELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSG 354
Query: 217 IGKSTFLNLLKGELTPNKGKVLLE 240
GKST L+ G P G V L+
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLD 378
Score = 37.7 bits (88), Expect = 0.007
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 230 LTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
+ P K L ++F L +A++GP+G GKST L+ G P G +R
Sbjct: 325 VPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 53.9 bits (130), Expect = 2e-08
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 179 VLGLHDV--TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
++ +H + T G G++ +L+ V + VA+VGP+G GKST L +L G P+ G
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65
Query: 236 KV-LLEKVNFGLDMESRVALVGPN-GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
+V LL + LD ++R AL + G +F L PN L
Sbjct: 66 EVRLLGQPLHKLDEDARAALRARHVGFVFQSFH------LIPNLTAL------------- 106
Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E++ P E + ++ L GL P LSGG++ RVALA
Sbjct: 107 ---ENV---ALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALA 158
Score = 44.7 bits (106), Expect = 2e-05
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTLLV-VS 62
+ SGG + RV+LARA P +L DEPT +LD + + L L + T LV V+
Sbjct: 145 AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVT 204
Query: 63 HDQS 66
HD
Sbjct: 205 HDPQ 208
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 55.2 bits (133), Expect = 2e-08
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWK---KTL 58
+K E S G R RV+LA+ L EP +++LDEPT +D + V + L+ + +T
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 59 LVVSHDQSFLNNIC 72
++VSHD F+ ++C
Sbjct: 482 IIVSHDMDFVLDVC 495
Score = 44.0 bits (104), Expect = 7e-05
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLL-----EKVN 243
GK +L+ ++F ++ + ++G +G GKS +++L+G + P G+++ EK
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
+ ++ S+V P G L + + +LR+ R RI Q + L+ DD
Sbjct: 71 Y-VERPSKVGEPCPVCGGT---LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDD 125
Query: 304 TPCEYLMK-LFNLPYEKSR---RQLGMFGLPSYAHTIP--IRDLSGGQKARVALA 352
T + +++ L + YE R + + + +H I RDLSGG+K RV LA
Sbjct: 126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVS 62
++ SGG + RV LAR L EP L L DEPT LD + N L+ K ++++ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 63 HDQSFLNNICTDIIHLD 79
H + ++ I L+
Sbjct: 227 HWPEVIEDLSDKAIWLE 243
Score = 37.5 bits (87), Expect = 0.010
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 49/160 (30%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKST-FLNLL 269
+VG +G GK+T ++ G L P G+V + + +DM GP+G G++ ++ +L
Sbjct: 315 IVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP----GPDGRGRAKRYIGIL 370
Query: 270 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQ---- 323
E L+P T + L + LP E +R +
Sbjct: 371 HQEYD------------------------LYPHRTVLDNLTEAIGLELPDELARMKAVIT 406
Query: 324 LGMFG---------LPSYAHTIPIRDLSGGQKARVALAEL 354
L M G L Y LS G++ RVALA++
Sbjct: 407 LKMVGFDEEKAEEILDKYPDE-----LSEGERHRVALAQV 441
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 50.7 bits (122), Expect = 2e-08
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 76 IHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHK 135
+ L+ KL YKGN++ + + ++ ++ K YE Q+K+I++++ R + K
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRF----RAKASK 56
Query: 136 ALKEQAR-KRVQKDDDDEPKELLEKPREYIVKFRF 169
A + Q+R K ++K E +EKP E K RF
Sbjct: 57 AKQAQSRIKALEK------MERIEKPVEKKPKIRF 85
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 53.3 bits (129), Expect = 2e-08
Identities = 42/143 (29%), Positives = 56/143 (39%), Gaps = 36/143 (25%)
Query: 223 LNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGEL 280
L + GK LL+ V+ A++GP+G GKST LN L G T GE+
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68
Query: 281 R--------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY 332
+S R IG Q + L P T E LM
Sbjct: 69 LINGRPLDKRSFRKIIGYVPQD--DILHPTLTVRETLM---------------------- 104
Query: 333 AHTIPIRDLSGGQKARVALA-EL 354
+R LSGG++ RV++A EL
Sbjct: 105 -FAAKLRGLSGGERKRVSIALEL 126
Score = 46.8 bits (112), Expect = 3e-06
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R RVS+A L P+LL LDEPT+ LD
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 54.6 bits (132), Expect = 2e-08
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVS 62
+ SGG R RV+LARAL +P + LLDEP ++LD L ++ + + T + V+
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVT 191
Query: 63 HDQ 65
HDQ
Sbjct: 192 HDQ 194
Score = 52.6 bits (127), Expect = 9e-08
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR 285
+L+ VN ++ V L+GP+G GKST L ++ G P GE+ P
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE 73
Query: 286 LR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTI 336
R I F ++ L+P T E + +KL +P + ++ + GL +
Sbjct: 74 KRGIAMVFQNYA---LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK 130
Query: 337 PIRDLSGGQKARVALA 352
P LSGGQ+ RVALA
Sbjct: 131 P-LQLSGGQRQRVALA 145
Score = 48.4 bits (116), Expect = 2e-06
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L L +V + +VL + VN ++ V L+GP+G GKST L ++ G P G++L+
Sbjct: 4 LELKNVRKSFGSFEVLKD-VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 54.1 bits (130), Expect = 2e-08
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
E SGG + R+ +ARA+ ++PT+LL+DEP + LD A ++N +Q KK T++VV+H
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
+ + ++ Y +FK + TK Y
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQEIFK----NPQSSKTKRY 247
Score = 34.0 bits (78), Expect = 0.079
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVNFG 245
G K +L +N + A +GP+G GKSTFL + PN KG++ ++ G
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID----G 71
Query: 246 LDMESRV-------ALVG-----PNGIGKSTFLNLLKG 271
+D+ S A VG PN KS + N+ G
Sbjct: 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG 109
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 54.4 bits (131), Expect = 2e-08
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
D+ F Y G L+ ++ + S+ AL+GPNG GKST L L G P +G+V
Sbjct: 9 DLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Score = 48.2 bits (115), Expect = 2e-06
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSPRLR 287
L+ ++ + S+ AL+GPNG GKST L L G P +G ++ K R +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 288 IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGLPSYAHTIPIRDL 341
+G Q + +F + N+ E RR L + + P L
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYH-L 139
Query: 342 SGGQKARVALA 352
S GQK RVA+A
Sbjct: 140 SYGQKKRVAIA 150
Score = 35.5 bits (82), Expect = 0.033
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTW 54
++K S G + RV++A L ++P +++LDEP +LD L ++ L
Sbjct: 131 FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR---LHNQ 187
Query: 55 KKTLLVVSHD 64
KT++V +HD
Sbjct: 188 GKTVIVATHD 197
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 55.1 bits (133), Expect = 3e-08
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 44/179 (24%)
Query: 185 VTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV- 242
VTF YPG + L+ ++ ++ VALVG +G GKST +NL+ P+ G++LL+
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 243 --NFGL-DMESRVALVGPNGIGKSTFLNLLKGELTPN--KGELRKSPRLRIGKFDQHSGE 297
++ L + +VALV + + L + N G ++ R I + +
Sbjct: 396 LADYTLASLRRQVALVSQD-------VVLFNDTIANNIAYGRTEQADRAEIERALAAA-- 446
Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD----LSGGQKARVALA 352
Y + LP T PI + LSGGQ+ R+A+A
Sbjct: 447 ----------YAQDFVD-------------KLPLGLDT-PIGENGVLLSGGQRQRLAIA 481
Score = 38.5 bits (90), Expect = 0.004
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARAL + +L+LDE T+ LD
Sbjct: 471 SGGQRQRLAIARALLKDAPILILDEATSALD 501
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 53.5 bits (129), Expect = 3e-08
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+L + +++ YP GK L+ +N ++ VA++GP+G GKST L + + P+ G +L
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 239 LEKVNFG-------LDMESRVALVGP--NGIGKSTFL-NLLKGELTPNKGELRKSPRLRI 288
LE + + R+ ++ N I + T L N+L G L K R
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG-YKPTWRSL----- 114
Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
+ S E E++ L GL A+ LSGGQ+ R
Sbjct: 115 --LGRFSEED------------------KERALSALERVGLADKAYQ-RADQLSGGQQQR 153
Query: 349 VALA 352
VA+A
Sbjct: 154 VAIA 157
Score = 48.8 bits (117), Expect = 1e-06
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKK---TLLVVS 62
+ SGG + RV++ARAL +P L+L DEP LD + +D + K+ T+++
Sbjct: 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 63 HDQSFLNNICTDIIHLDMKKLFYYK 87
H I+ L ++ +
Sbjct: 204 HQVDLAKKYADRIVGLKAGEIVFDG 228
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 54.6 bits (132), Expect = 3e-08
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 172 PPYLPPP--VLGL---HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
PP V G DV+F Y + +E V+F VA+VGP G GKST +NLL
Sbjct: 322 PPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
Query: 227 KGELTPNKGKVLLEKVN 243
+ P G++L++ +
Sbjct: 382 QRVFDPQSGRILIDGTD 398
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALD 503
Score = 39.9 bits (94), Expect = 0.002
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 234 KGKVLLEKVNFGLDMESR--------------VALVGPNGIGKSTFLNLLKGELTPNKGE 279
KG V + V+F D + VA+VGP G GKST +NLL+ P G
Sbjct: 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 280 LR 281
+
Sbjct: 392 IL 393
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 53.1 bits (128), Expect = 3e-08
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------RKSP 284
+ L ++F L+ + + GPNG GK+T L +L G L P+ GE+ R+S
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYL--MKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRD 340
+ G + + T E L + F+ L GL +P+
Sbjct: 74 HQALLYLGHQPG--IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQ 130
Query: 341 LSGGQKARVALAELTL 356
LS GQ+ RVALA L L
Sbjct: 131 LSAGQQRRVALARLWL 146
Score = 34.6 bits (80), Expect = 0.041
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
S G + RV+LAR L +LDEP LD V
Sbjct: 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 53.4 bits (128), Expect = 3e-08
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
+S SGG + RV +AR L ++P ++LLDEPT+ LD + ++N L + T+++V
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203
Query: 62 SHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
+H + I K F+ GN F K+M++ +++ T++Y
Sbjct: 204 THSMHQASRISD-------KTAFFLTGNLIEFADTKQMFLNPKEKETEDY 246
Score = 30.3 bits (68), Expect = 1.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLL 239
+ G L+ ++ + AL+GP+G GKST+L L +L P G V L
Sbjct: 14 FYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSL 69
Score = 28.4 bits (63), Expect = 4.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
L+ ++ + AL+GP+G GKST+L L
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 53.5 bits (129), Expect = 3e-08
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW-----KKTLLVVSHD 64
S G + RV +ARAL +P LL+LDEP LDL A L N L+ LL V+H
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
Query: 65 QSFLNNICTDIIHLDMKKLFY 85
+ T + L ++
Sbjct: 233 AEEIPPCFTHRLLLKEGEVVA 253
Score = 48.5 bits (116), Expect = 2e-06
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
P++ L +V+ GK +L +++ ++ A+VGPNG GK+T L+LL GE P+ G
Sbjct: 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 236 KVLLEKVNFG-----LDMESRVALVGP 257
V L FG ++ R+ LV
Sbjct: 87 DVTLLGRRFGKGETIFELRKRIGLVSS 113
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 52.9 bits (127), Expect = 4e-08
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 38/149 (25%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESR--VALVGPNGIGKSTF 265
A+VGP+G GKST LNL+ G TP G+VL+ V+ + V+++
Sbjct: 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE------- 78
Query: 266 LNLLKGELT--PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 323
N L LT N G L SP L++ D+ +
Sbjct: 79 -NNLFAHLTVEQNVG-LGLSPGLKLTAEDR------------------------QAIEVA 112
Query: 324 LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
L GL +P +LSGG++ RVALA
Sbjct: 113 LARVGLAGLEKRLP-GELSGGERQRVALA 140
Score = 46.7 bits (111), Expect = 5e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKKTLLVV 61
E SGG R RV+LAR L + +LLLDEP LD + ++ LD + +T K T+L+V
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV-LDLHAET-KMTVLMV 185
Query: 62 SHDQSFLNNICTDIIHLDMKKLFY 85
+H + ++ LD ++
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAA 209
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 53.7 bits (130), Expect = 4e-08
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKT-LLVVSH 63
E SGG R RV +A AL L P LL+ DEPT LD+ ++ L LQ K T L++++H
Sbjct: 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
Query: 64 DQSFLNNICTDII 76
D + I +
Sbjct: 213 DLGVVAEIADRVA 225
Score = 35.2 bits (82), Expect = 0.038
Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 59/192 (30%)
Query: 185 VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
V+F G V ++ V+F L + +VG +G GKS + G L +++ ++
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 244 F------GLDMESRVALVGPNGIG-----KSTFLNLLKGELTPNKGELRKSPRLRIGKFD 292
F L + + G I T LN P + IG
Sbjct: 69 FDGKDLLSLSEKELRKIRG-KEIAMIFQDPMTSLN----------------PVMTIGD-- 109
Query: 293 QHSGEHLFPDDTPCEYLMKLFNLP-----YEKSRRQLGMFGLP-------SYAHTIPIRD 340
+ E L E++ L + G+P SY H +
Sbjct: 110 -----QI------AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-----E 153
Query: 341 LSGGQKARVALA 352
LSGG + RV +A
Sbjct: 154 LSGGMRQRVMIA 165
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 52.5 bits (127), Expect = 4e-08
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQ 65
FSGG + R + + L LEP L +LDEP + LD++A+ + + K++L+++H Q
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 66 SFLNNICTDIIHL 78
L+ I D +H+
Sbjct: 165 RLLDYIKPDRVHV 177
Score = 39.8 bits (94), Expect = 8e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGLDM 248
GGK +L+ VN + AL+GPNG GKST + G + +G++L + + D+
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI-TDL 69
Query: 249 E 249
Sbjct: 70 P 70
Score = 36.7 bits (86), Expect = 0.008
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 37/134 (27%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
GK +L+ VN + AL+GPNG GKST + G P+ + +
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-----------PKYEVTE---- 56
Query: 295 SGEHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIP-------IRDL----S 342
GE LF + + +L P E++R LG+F Y IP +R + S
Sbjct: 57 -GEILFKGED-------ITDLPPEERAR--LGIFLAFQYPPEIPGVKNADFLRYVNEGFS 106
Query: 343 GGQKARVALAELTL 356
GG+K R + +L L
Sbjct: 107 GGEKKRNEILQLLL 120
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 53.1 bits (128), Expect = 4e-08
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 44/180 (24%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+VT Y GGK + +N + + L+GP+G GK+T + ++ + P G++ ++
Sbjct: 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFID- 61
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
G+ E P ELR+ +IG Q G LFP
Sbjct: 62 -------------------GEDI------REQDPV--ELRR----KIGYVIQQIG--LFP 88
Query: 302 DDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLP--SYAHTIPIRDLSGGQKARVALA 352
T E + KL P EK R + L + GL +A P +LSGGQ+ RV +A
Sbjct: 89 HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVA 147
Score = 43.8 bits (104), Expect = 4e-05
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
E SGG + RV +ARAL +P LLL+DEP LD L Q KT++ V+H
Sbjct: 135 ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194
Query: 64 D 64
D
Sbjct: 195 D 195
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 52.8 bits (127), Expect = 6e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSH 63
+ SGG + RV++ARAL + P ++L DEPT+ LD + V+ L K+T+++V+H
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202
Query: 64 DQSFLNNICTDIIHLD 79
+ SF ++ I +D
Sbjct: 203 EMSFARDVADRAIFMD 218
Score = 43.6 bits (103), Expect = 7e-05
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 34/148 (22%)
Query: 234 KGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFL---NLLK---------GELTPNK 277
G+ +L G+D+E + VA++GP+G GK+T L NLL+ G++T +
Sbjct: 14 HGQTVLH----GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69
Query: 278 GELRKSPRLRIGKFDQHSG-----EHLFPDDTPCEYLMK----LFNLPYE----KSRRQL 324
+ I + QH G +LFP T E +++ + P E ++R L
Sbjct: 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL 129
Query: 325 GMFGLPSYAHTIPIRDLSGGQKARVALA 352
GL + P R LSGGQ+ RVA+A
Sbjct: 130 AKVGLAGKETSYP-RRLSGGQQQRVAIA 156
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 53.4 bits (129), Expect = 6e-08
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-------TLLV 60
+ SGG + RV++ARAL P +LL DE T+ LD + L+ K T+++
Sbjct: 141 QLSGGQKQRVAIARALANNPKILLCDEATSALDPETT---QSILELLKDINRELGLTIVL 197
Query: 61 VSHDQSFLNNICTDIIHLD 79
++H+ + IC + LD
Sbjct: 198 ITHEMEVVKRICDRVAVLD 216
Score = 48.4 bits (116), Expect = 2e-06
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 43/182 (23%)
Query: 182 LHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L +V+ + L+ V+ + ++G +G GKST L L+ P G V
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
++ + AL ++ ELR+ R +IG QH
Sbjct: 64 FVDGQDLT-------AL---------------------SEAELRQL-RQKIGMIFQHF-- 92
Query: 298 HLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
+L T E + ++L +P + +++ L + GL A P LSGGQK RVA
Sbjct: 93 NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSGGQKQRVA 151
Query: 351 LA 352
+A
Sbjct: 152 IA 153
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 52.1 bits (126), Expect = 6e-08
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 235 GKVLLEKVNFGL---DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIGK 290
++L ++F L ++ V + GPNG GK++ L +L G P+ GE+ + +R +
Sbjct: 13 ERILFSGLSFTLNAGEL---VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 291 FDQHSGEHLF--------PDDTPCE---YLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIPI 338
+ H + L+ + T E + +L +++ + L GL + +P+
Sbjct: 70 DEYHQ-DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VPV 127
Query: 339 RDLSGGQKARVALAELTL 356
R LS GQ+ RVALA L L
Sbjct: 128 RQLSAGQQRRVALARLWL 145
Score = 35.2 bits (82), Expect = 0.027
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWL 47
S G + RV+LAR L +LDEP +D V L
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 52.2 bits (126), Expect = 6e-08
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 47/181 (25%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L L ++T Y + L L + + L+GPNG GK+T + +L P+ G +
Sbjct: 1 LQLENLTKRYGKKRAL---DGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
+ +G ++ +LR+ RIG Q G
Sbjct: 58 I------------------DGQ-----------DVLKQPQKLRR----RIGYLPQEFG-- 82
Query: 299 LFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVAL 351
++P+ T E Y+ L +P ++ + + L + L A I LSGG + RV +
Sbjct: 83 VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-KIGSLSGGMRRRVGI 141
Query: 352 A 352
A
Sbjct: 142 A 142
Score = 46.8 bits (112), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVV- 61
+K SGG R RV +A+AL +P++L++DEPT LD I N L + +V+
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVIL 184
Query: 62 -SHDQSFLNNICTDIIHLDMKKLFY 85
+H + ++C + L+ KL +
Sbjct: 185 STHIVEDVESLCNQVAVLNKGKLVF 209
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 52.8 bits (127), Expect = 7e-08
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHD 64
SGG + RV++ARAL +EP ++L DEPT+ LD + V+ + L +T++VV+H+
Sbjct: 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
Query: 65 QSFLNNICTDIIHL 78
F ++ + +I L
Sbjct: 212 MGFARDVSSHVIFL 225
Score = 34.3 bits (79), Expect = 0.067
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 50/163 (30%)
Query: 223 LNLLKG-ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KGELT 274
+LKG L N G V ++++G +G GKSTFL N L G +
Sbjct: 19 HEVLKGVSLQANAGDV--------------ISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 275 PNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLMK----LF 313
N E+R R R+G QH +L+ T E +++ +
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVL 122
Query: 314 NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ E++ + L G+ A P LSGGQ+ RVA+A
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIA 164
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 52.2 bits (126), Expect = 7e-08
Identities = 49/184 (26%), Positives = 67/184 (36%), Gaps = 46/184 (25%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNK---GK 236
L D+ Y G K L+ ++ + AL+GP+G GKST L LL +L P G+
Sbjct: 3 LRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE 61
Query: 237 VLLEKVNFGLDMESRVAL---VG-----PNGIGKSTFLNLLKGELTPNKGELRKSPRLRI 288
VLL+ + + L VG PN S + N+ G RL
Sbjct: 62 VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYG------------LRLH- 108
Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
E L D E ++ L E R LSGGQ+ R
Sbjct: 109 ---GIKLKEEL---DERVEEALRKAALWDEVKDRLHA-------------LGLSGGQQQR 149
Query: 349 VALA 352
+ LA
Sbjct: 150 LCLA 153
Score = 50.3 bits (121), Expect = 3e-07
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+ LARAL EP +LLLDEPT+ LD
Sbjct: 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 52.4 bits (126), Expect = 7e-08
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-------------E 297
VA++GP+G GKST LNL+ G TP GE + I D H+ E
Sbjct: 27 IVAILGPSGAGKSTLLNLIAGFETPASGE------ILINGVD-HTASPPAERPVSMLFQE 79
Query: 298 H-LFPDDTPCEYL-------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
+ LF T + + +KL EK GL + +P +LSGGQ+ RV
Sbjct: 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-GELSGGQRQRV 138
Query: 350 ALA 352
ALA
Sbjct: 139 ALA 141
Score = 43.1 bits (102), Expect = 8e-05
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNA--VIWLDNYLQTWKKTLLVVSH 63
E SGG R RV+LAR L E +LLLDEP + LD L A + + K TLL+V+H
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
Query: 64 DQSFLNNICTDIIHLD 79
I ++ LD
Sbjct: 189 HPEDAARIADRVVFLD 204
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 53.4 bits (129), Expect = 7e-08
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHDQS 66
SGG R R++LARAL+ +P L++LDEP ++LD L + K T++V++H S
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 67 FLNNI 71
L ++
Sbjct: 534 ALASV 538
Score = 48.8 bits (117), Expect = 2e-06
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 175 LPPP--VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231
LP P L + +T PG K +L+ ++F L + ++GP+G GKST LL G
Sbjct: 328 LPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP 387
Query: 232 PNKGKVLL 239
P G V L
Sbjct: 388 PTSGSVRL 395
Score = 40.7 bits (96), Expect = 9e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
P + K +L+ ++F L + ++GP+G GKST LL G P G +R
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 53.8 bits (130), Expect = 8e-08
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDME--SRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L ++TFGY P L+E NF L ++ RVALVG +G GKST L+ G P G++L
Sbjct: 480 LRNITFGYSPLEPPLIE--NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 239 L 239
Sbjct: 538 F 538
Score = 48.4 bits (116), Expect = 4e-06
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
SGG R R+ +ARAL P++L+LDE T+ LD +D+ L+ T ++V+H S +
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTI 675
Query: 69 NNICTDIIHLD 79
+ C +II L+
Sbjct: 676 RD-CDEIIVLE 685
Score = 43.0 bits (102), Expect = 2e-04
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 243 NFGLDME--SRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
NF L ++ RVALVG +G GKST L+ G P GE+
Sbjct: 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 52.2 bits (126), Expect = 8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHDQ 65
FSGG + R + + L LEP L +LDEP + LD++A V N L+ + +L+++H Q
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 66 SFLNNICTDIIHL 78
L+ I D +H+
Sbjct: 205 RLLDYIKPDKVHV 217
Score = 37.6 bits (88), Expect = 0.006
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNF-GLD 247
G K +L+ VN + A++GPNG GKST + G + +G++L + + L
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 248 MESRVAL 254
+ R
Sbjct: 75 PDERARA 81
Score = 31.0 bits (71), Expect = 0.86
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 271
K +L+ VN + A++GPNG GKST + G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 51.8 bits (125), Expect = 8e-08
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
G G L+ V+F + R+ L+G NG GKST L LL G P+ G V
Sbjct: 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
Score = 48.7 bits (117), Expect = 1e-06
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
L+ V+F + R+ L+G NG GKST L LL G P+ G +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
Score = 37.9 bits (89), Expect = 0.004
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
K +S G + R++ A A LEP +LL+DE D L+ K T+++VSH
Sbjct: 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200
Query: 64 DQSFLNNICTDIIHLD 79
D S + +C + L+
Sbjct: 201 DPSSIKRLCDRALVLE 216
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 53.3 bits (129), Expect = 9e-08
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 31/115 (26%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG------KFDQHSGEHLFPDDTP 305
+ +VGPNGIGK+TF LL G L P++GE+ P L+I K D D T
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQYIKPDY--------DGTV 417
Query: 306 CEYLMKL---FNLPYEKSR--RQLGMFGLPSYAHTI---PIRDLSGGQKARVALA 352
+ L + Y KS + L + + ++DLSGG+ RVA+A
Sbjct: 418 EDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNVKDLSGGELQRVAIA 465
Score = 52.1 bits (126), Expect = 2e-07
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+ +VGPNGIGK+TF LL G L P++G+V E
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399
Score = 49.4 bits (119), Expect = 2e-06
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
P +GKV ++GPNGIGK+T + +L GEL PN G+ + P
Sbjct: 95 IPKEGKV--------------TGILGPNGIGKTTAVKILSGELIPNLGDYEEEP 134
Score = 46.7 bits (112), Expect = 1e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV 237
++GPNGIGK+T + +L GEL PN G
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDY 130
Score = 46.0 bits (110), Expect = 2e-05
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
+K+ K+ SGG RV++A L + L LLDEP+ HLD L + + + T
Sbjct: 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
Query: 59 LVVSHDQSFLNNICTDII 76
LVV HD ++ I ++
Sbjct: 508 LVVDHDIYMIDYISDRLM 525
Score = 39.4 bits (93), Expect = 0.002
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
++ E SGG RV++A AL + DEPT++LD LN + + K +
Sbjct: 207 DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYV 264
Query: 59 LVVSHDQSFLNNICTDIIHL 78
LVV HD + L+ + D +H+
Sbjct: 265 LVVEHDLAVLDYL-ADNVHI 283
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 52.8 bits (127), Expect = 1e-07
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 52/181 (28%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
V+G++D + G++ + ++G +G GKST + LL + P +G++L
Sbjct: 41 VVGVNDASLDVEEGEIFV--------------IMGLSGSGKSTLVRLLNRLIEPTRGEIL 86
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
++ G D+ + ELR+ R +I Q
Sbjct: 87 VD----GKDI------------------------AKLSAAELRELRRKKISMVFQSFA-- 116
Query: 299 LFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
L P T E + +++ +P E++ L + GL YA P +LSGG + RV L
Sbjct: 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSGGMQQRVGL 175
Query: 352 A 352
A
Sbjct: 176 A 176
Score = 49.3 bits (118), Expect = 1e-06
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKTLLVVSH 63
E SGG + RV LARAL +P +LL+DE + LD L D L+ KKT++ ++H
Sbjct: 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223
Query: 64 D 64
D
Sbjct: 224 D 224
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 52.2 bits (126), Expect = 1e-07
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-------TLLV 60
E SGG R R+ +ARAL L P L++ DEP + LD V L K T L
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALD---VSVQAQILNLLKDLQEELGLTYLF 165
Query: 61 VSHDQSFLNNICTDII 76
+SHD S + I I
Sbjct: 166 ISHDLSVVRYISDRIA 181
Score = 38.7 bits (91), Expect = 0.003
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
++ V+F + + LVG +G GKST L+ G P GE+ F+
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL---------FEGKDITK 79
Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA 352
L ++ E+ L GLP + + P +LSGGQ+ R+ +A
Sbjct: 80 LSKEER------------RERVLELLEKVGLPEEFLYRYP-HELSGGQRQRIGIA 121
Score = 37.6 bits (88), Expect = 0.006
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 178 PVLGLHDVTFGYPGGKVL--------LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
P+L + ++ +P GK ++ V+F + + LVG +G GKST L+ G
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 230 LTPNKGKVLLEKVNF-GLDMESRVALV 255
P G++L E + L E R V
Sbjct: 63 EEPTSGEILFEGKDITKLSKEERRERV 89
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 51.5 bits (124), Expect = 1e-07
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 184 DVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+VTF YPG G +L ++ + VALVGP+G GKST +NL+ + G++L++
Sbjct: 5 NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGH 64
Query: 243 N---FGL-DMESRVALV 255
+ + L + ++ LV
Sbjct: 65 DVRDYTLASLRRQIGLV 81
Score = 44.1 bits (105), Expect = 4e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALD 170
Score = 41.1 bits (97), Expect = 3e-04
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 69/165 (41%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
P G +L ++ + VALVGP+G GKST +NL+ PR +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI--------------PRF----Y 52
Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----------------FGLP---- 330
D SG L +Y L +L RRQ+G+ +G P
Sbjct: 53 DVDSGRILIDGHDVRDY--TLASL-----RRQIGLVSQDVFLFNDTVAENIAYGRPGATR 105
Query: 331 ---------SYAHTI----------PIRD----LSGGQKARVALA 352
+ AH I + LSGGQ+ R+A+A
Sbjct: 106 EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIA 150
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 51.4 bits (123), Expect = 1e-07
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 27/138 (19%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--RKSP-------- 284
+L ++ + +A+ GP+G GKST L ++ ++P G L
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 285 -RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---------LGMFGLPSYAH 334
R ++ Q LF DT + L+ P++ R+ L F LP
Sbjct: 75 YRQQVSYCAQTPA--LFG-DTVEDNLI----FPWQIRNRRPDRAAALDLLARFALPDSIL 127
Query: 335 TIPIRDLSGGQKARVALA 352
T I +LSGG+K R+AL
Sbjct: 128 TKNITELSGGEKQRIALI 145
Score = 42.5 bits (100), Expect = 1e-04
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTL 58
K+ E SGG + R++L R L P +LLLDE T+ LD + ++ + + +
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187
Query: 59 LVVSHD 64
L ++HD
Sbjct: 188 LWITHD 193
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 51.1 bits (123), Expect = 1e-07
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
++ K+ SGG R RV+L RA+ EP + L+DEP ++LD + L Q T
Sbjct: 125 DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184
Query: 59 LVVSHDQ 65
+ V+HDQ
Sbjct: 185 IYVTHDQ 191
Score = 45.3 bits (108), Expect = 1e-05
Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 53/182 (29%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
L +VT + G L+ +N + V L+GP+G GK+T L ++ G P G++ +
Sbjct: 3 LENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG- 60
Query: 242 VNFGLDMESRVALVGPN--GIGKSTFLNLLKGELTPNKG---------ELRKSPRLRIGK 290
V + P I F N L P+ +LRK P+ I
Sbjct: 61 -------GRDVTDLPPKDRDIAM-VFQNY---ALYPHMTVYDNIAFGLKLRKVPKDEID- 108
Query: 291 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
E+ R + + P + LSGGQ+ RVA
Sbjct: 109 ---------------------------ERVREVAELLQIEHLLDRKP-KQLSGGQRQRVA 140
Query: 351 LA 352
L
Sbjct: 141 LG 142
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 51.4 bits (123), Expect = 1e-07
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-------RKSPRLRIGKFDQH 294
++F +D + + G NG GK+T L +L G L G++ + R R + H
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
L D + E L L L ++++ L + GL Y T+ +R LS GQK R+A
Sbjct: 90 LPG-LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL-VRQLSAGQKKRLA 147
Query: 351 LAELTL 356
LA L L
Sbjct: 148 LARLWL 153
Score = 33.7 bits (77), Expect = 0.094
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 7 KEFSGGWRIRVSLARALFLEPT-LLLLDEPTNHLDLNAVIWLDNYLQT 53
++ S G + R++LAR L+L P L LLDEP +LDL + ++ +
Sbjct: 136 RQLSAGQKKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 52.4 bits (126), Expect = 1e-07
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKKTLLVVSH 63
+ SGG + RV+LARAL +EP +LLLDEP LD WL + K T + V+H
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
Query: 64 DQ 65
DQ
Sbjct: 196 DQ 197
Score = 40.8 bits (96), Expect = 7e-04
Identities = 44/139 (31%), Positives = 58/139 (41%), Gaps = 39/139 (28%)
Query: 243 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRL-----RIGKF 291
+ LD+ S VAL+GP+G GK+T L ++ G G +R RL ++G
Sbjct: 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79
Query: 292 DQHSGEHLFPDDTPCEYLMKLFN--------LPY----------EKSRRQLGMFGLPSYA 333
QH LF M +F+ LP K + L M L A
Sbjct: 80 FQHYA--LFRH-------MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 334 HTIPIRDLSGGQKARVALA 352
P + LSGGQK RVALA
Sbjct: 131 DRYPAQ-LSGGQKQRVALA 148
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 200 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ LD+ S VAL+GP+G GK+T L ++ G G +
Sbjct: 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 51.3 bits (123), Expect = 2e-07
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
EFS G + +V++ARAL +P++L+LDEPT+ LD+ ++++ K + ++ SH
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
Query: 65 QSFLNNICTDIIHL 78
+ +C +I L
Sbjct: 193 MQEVEALCDRVIVL 206
Score = 43.6 bits (103), Expect = 6e-05
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPRLRIGKF 291
+ V+F + L+G NG GK+T L ++ L P+ G+ + P K
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG--------MFGLPSYAHTIPIRDLSG 343
GE +K F SR+++ L Y + + S
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-RVGEFST 136
Query: 344 GQKARVALA 352
G K +VA+A
Sbjct: 137 GMKQKVAIA 145
Score = 43.2 bits (102), Expect = 7e-05
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
V + DV+F G++ L+G NG GK+T L ++ L P+ G
Sbjct: 12 GSKVQAVRDVSFEAEEGEI--------------TGLLGENGAGKTTLLRMIATLLIPDSG 57
Query: 236 KVLLEKVN 243
KV ++ V+
Sbjct: 58 KVTIDGVD 65
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 52.2 bits (126), Expect = 2e-07
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL------KGELTPNKGELR 281
GK L +NF L R+ALVGP+G GK++ LN L +G L N ELR
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELR 414
Score = 52.2 bits (126), Expect = 2e-07
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 13/77 (16%)
Query: 190 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG---- 245
P GK L +NF L R+ALVGP+G GK++ LN L G L P +G + K+N G
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL---KIN-GIELR 414
Query: 246 -LDMES---RVALVGPN 258
LD ES ++ VG N
Sbjct: 415 ELDPESWRKHLSWVGQN 431
Score = 39.8 bits (94), Expect = 0.002
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQ--TWKKTLLVVSHD 64
S G R++LARAL LLLLDEPT LD V+ L + ++T L+V+H
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM---QALNAASRRQTTLMVTHQ 543
Query: 65 QSFL 68
L
Sbjct: 544 LEDL 547
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 51.7 bits (124), Expect = 2e-07
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLL 59
Q K + S G+R RV LA+AL +P +L+LDEPT LD N ++ + N ++ KT++
Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186
Query: 60 VVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
+ +H + IC +I ++ K+ ++ E+ E ++ + ++
Sbjct: 187 LSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAANKKQVIEVEFEEQIDLQLFETLE 245
Score = 34.4 bits (79), Expect = 0.066
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 20/132 (15%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRI 288
L++V+F V +GPNG GKST + ++ G L P+ G ++ K + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 289 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDL 341
G +H+ L+ D EYL ++ + + +++ + + GL H I L
Sbjct: 78 GYLPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQL 134
Query: 342 SGGQKARVALAE 353
S G + RV LA+
Sbjct: 135 SKGYRQRVGLAQ 146
Score = 33.6 bits (77), Expect = 0.11
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L++V+F V +GPNG GKST + ++ G L P+ G V +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 50.8 bits (122), Expect = 2e-07
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKTLLVVSH 63
E SGG R RV++ARAL +P+L+L DEPT +LD NA I D L+ + LVV+H
Sbjct: 141 ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200
Query: 64 D 64
D
Sbjct: 201 D 201
Score = 42.3 bits (100), Expect = 1e-04
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 33/140 (23%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPRLRIGKF 291
L+ V+ + VA+VG +G GKST L+LL G P GE L K K
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80
Query: 292 -DQHSG-----EHLFPDDTPCEYLMKLFNLPY-----------EKSRRQLGMFGLPSYAH 334
++ G HL PD T E + +P E++ L GL H
Sbjct: 81 RNKKLGFIYQFHHLLPDFTALENVA----MPLLIGKKSVKEAKERAYEMLEKVGL---EH 133
Query: 335 TIPIR--DLSGGQKARVALA 352
I R +LSGG++ RVA+A
Sbjct: 134 RINHRPSELSGGERQRVAIA 153
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
L+ V+ + VA+VG +G GKST L+LL G P G+VL +
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 51.2 bits (123), Expect = 2e-07
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 39/176 (22%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
D+ + YP G L+ +NF + VAL+GPNG GKST G L P G+V
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV------ 59
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE-LTPNKGELRKSPRLRIGKFDQHSGEHLFPD 302
L+KGE + +K L + R +G Q+ + LF
Sbjct: 60 ------------------------LIKGEPIKYDKKSLLEV-RKTVGIVFQNPDDQLFAP 94
Query: 303 DTPCEYLMKLFNLPY------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ NL ++ + L G+ + + P LSGGQK RVA+A
Sbjct: 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP-HHLSGGQKKRVAIA 149
Score = 38.5 bits (90), Expect = 0.003
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TL 58
+ K SGG + RV++A L ++P +++LDEPT+ LD + L K T+
Sbjct: 131 ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITI 190
Query: 59 LVVSHD 64
++ +HD
Sbjct: 191 IISTHD 196
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 51.0 bits (122), Expect = 2e-07
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 41/185 (22%)
Query: 178 PVLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
+L ++ Y G V L V+F + +A+VG +G GKST L+LL G TP
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
G V+ G+ ++ L + K ELR I +F
Sbjct: 64 GDVIFN--------------------GQP--MSKLS---SAAKAELRNQKLGFIYQF--- 95
Query: 295 SGEHLFPDDTPCEYL-MKLF------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
HL PD T E + M L ++ L GL A+ P +LSGG++
Sbjct: 96 --HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-SELSGGERQ 152
Query: 348 RVALA 352
RVA+A
Sbjct: 153 RVAIA 157
Score = 49.8 bits (119), Expect = 6e-07
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKT-LLVVSH 63
E SGG R RV++ARAL P L+L DEPT +LD +++ L L + T LVV+H
Sbjct: 145 ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204
Query: 64 D 64
D
Sbjct: 205 D 205
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 51.0 bits (122), Expect = 2e-07
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IG 289
L+ VN + S VAL+GP+G GKST L ++ G P+ G + R R R IG
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 290 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 342
QH LF T + + +++ P K + + L + L P LS
Sbjct: 76 FVFQHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-NQLS 132
Query: 343 GGQKARVALA 352
GGQ+ RVALA
Sbjct: 133 GGQRQRVALA 142
Score = 50.6 bits (121), Expect = 3e-07
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKKTLLVV 61
+ SGG R RV+LARAL +EP +LLLDEP LD L + WL T + V
Sbjct: 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS--WLRKLHDEVHVTTVFV 187
Query: 62 SHDQS 66
+HDQ
Sbjct: 188 THDQE 192
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 50.7 bits (122), Expect = 3e-07
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 219 KSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
K L KG + L + ++F + RV ++G NG GKST L L+ G P G
Sbjct: 24 KKRLKGLAKGGRKVAEFWAL-KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82
Query: 279 ELR 281
+++
Sbjct: 83 KVK 85
Score = 49.2 bits (118), Expect = 9e-07
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 187 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L+ ++F + RV ++G NG GKST L L+ G P GKV
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Score = 39.1 bits (92), Expect = 0.002
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN----AVIWLDNYLQTWKKTLLVVS 62
K +S G R++ + A +EP +LLLDE D + L+ ++ KT+++VS
Sbjct: 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVS 204
Query: 63 HDQSFLNNICTDIIHLD 79
HD + C I L+
Sbjct: 205 HDLGAIKQYCDRAIWLE 221
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 50.2 bits (121), Expect = 3e-07
Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 53/150 (35%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
+ L+ +N + VA+VGP G GKS+ L+ L GEL G + I
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYV 71
Query: 292 DQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI-------- 336
Q P ++ LF P+++ R Y I
Sbjct: 72 SQ----------EP--WIQNGTIRENILFGKPFDEER----------YEKVIKACALEPD 109
Query: 337 ----PIRD----------LSGGQKARVALA 352
P D LSGGQK R++LA
Sbjct: 110 LEILPDGDLTEIGEKGINLSGGQKQRISLA 139
Score = 46.7 bits (112), Expect = 4e-06
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
+ + D +F + G L+ +N + VA+VGP G GKS+ L+ L GEL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 236 KV 237
V
Sbjct: 61 SV 62
Score = 38.6 bits (91), Expect = 0.002
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 27/85 (31%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV---------------IWLDNYLQTW 54
SGG + R+SLARA++ + + LLD+P L+AV + L+N
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDP-----LSAVDAHVGRHIFENCILGLLLNN----- 178
Query: 55 KKTLLVVSHDQSFLNNICTDIIHLD 79
KT ++V+H L + I+ LD
Sbjct: 179 -KTRILVTHQLQLLPH-ADQIVVLD 201
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 50.1 bits (121), Expect = 3e-07
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L + ++ GY G +L V+ + VAL+G NG GK+T L + G L P G +
Sbjct: 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59
Query: 240 E 240
+
Sbjct: 60 D 60
Score = 42.8 bits (102), Expect = 1e-04
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
L V+ + VAL+G NG GK+T L + G L P G +R
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Score = 41.3 bits (98), Expect = 3e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPT 36
SGG + +++ARAL P LLLLDEP+
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPS 160
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 50.0 bits (120), Expect = 4e-07
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
SGG + RV++ARAL P L+L DEPT LD + + +Q + T+L+V+H
Sbjct: 141 NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
Query: 64 DQSFLNNICTDIIHLDMKKLF 84
D L ++ I+H++ KL
Sbjct: 201 DNRIL-DVADRIVHMEDGKLL 220
Score = 43.5 bits (103), Expect = 6e-05
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 37/145 (25%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------------R 281
K +L +N ++ V L GP+G GK+T L L+ G + +G L
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77
Query: 282 KSPRLRIGK-FDQHS-------------GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 327
R IG F H+ L P+ + E E++R L
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE--------ARERARAMLEAV 129
Query: 328 GLPSYAHTIPIRDLSGGQKARVALA 352
GL + P +LSGGQK RVA+A
Sbjct: 130 GLGDHLDYYP-HNLSGGQKQRVAIA 153
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 49.8 bits (119), Expect = 4e-07
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 38/177 (21%)
Query: 184 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+VTF YP ++L+ V+F L ALVGP+G GKST + LL+ P G+VLL+
Sbjct: 16 NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75
Query: 242 VNFGL----DMESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
+ S+V+LVG P +S N+ G L+ + + Q +
Sbjct: 76 KPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG--------LQSCSFECVKEAAQKA 127
Query: 296 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
H F + +L + + + LSGGQK RVA+A
Sbjct: 128 HAHSF--------ISELASGYDTEVGEKGSQ--------------LSGGQKQRVAIA 162
Score = 49.0 bits (117), Expect = 1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSH 63
SGG + RV++ARAL P +L+LDE T+ LD + + L W ++T+LV++H
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
Score = 38.6 bits (90), Expect = 0.002
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 228 GELTPN--KGKVLLEKVNF------------GLDMESR----VALVGPNGIGKSTFLNLL 269
G L P+ KG V + V F + ALVGP+G GKST + LL
Sbjct: 1 GSLAPDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60
Query: 270 KGELTPNKGEL 280
+ P G++
Sbjct: 61 ENFYQPQGGQV 71
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 51.3 bits (123), Expect = 5e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ +V+F Y ++L+ +N L + SR VALVG G GKST +LL G +G++ L
Sbjct: 343 IDNVSFAYRDDNLVLQNIN--LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 240 E 240
+
Sbjct: 401 D 401
Score = 43.2 bits (102), Expect = 2e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 234 KGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
++L+ +N L + SR VALVG G GKST +LL G +GE+R
Sbjct: 352 DDNLVLQNIN--LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399
Score = 28.1 bits (63), Expect = 9.3
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
S G + ++LAR L P +L+LDE T ++D + L ++ TL+V++H
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAH 533
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 50.3 bits (121), Expect = 5e-07
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 52/182 (28%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+G++DV+ G++ + ++G +G GKST L + + P GKV
Sbjct: 36 QTVGVNDVSLDVREGEIFV--------------IMGLSGSGKSTLLRCINRLIEPTSGKV 81
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
L++ G D+ ++ ELR+ R +I Q
Sbjct: 82 LID----GQDI------------------------AAMSRKELRELRRKKISMVFQSFA- 112
Query: 298 HLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
L P T E + +++ +P E++ L + GL + H P +LSGG + RV
Sbjct: 113 -LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVG 170
Query: 351 LA 352
LA
Sbjct: 171 LA 172
Score = 45.3 bits (108), Expect = 2e-05
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT--------WKKTL 58
E SGG + RV LARAL ++P +LL+DE + LD +I + +Q +KT+
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALD--PLIRRE--MQDELLRLQAELQKTI 214
Query: 59 LVVSHD 64
+ ++HD
Sbjct: 215 VFITHD 220
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 50.1 bits (120), Expect = 5e-07
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
+ +L V+ L + L+GPNG GKST + ++ G + P++G ++++ +LRIG Q
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQ-- 74
Query: 296 GEHLFPDDT---PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI--PIRDLSGGQKARVA 350
L+ D T ++L P K L H I P++ LSGG+ RV
Sbjct: 75 --KLYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVL 130
Query: 351 LAELTL 356
LA L
Sbjct: 131 LARALL 136
Score = 49.7 bits (119), Expect = 6e-07
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 15/80 (18%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVS 62
++ SGG RV LARAL P LL+LDEPT +D+N + L + + ++ L L+VS
Sbjct: 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178
Query: 63 HDQSFLNNICTDIIHLDMKK 82
HD +HL M K
Sbjct: 179 HD-----------LHLVMAK 187
Score = 35.9 bits (83), Expect = 0.023
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 185 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
V+FG + +L V+ L + L+GPNG GKST + ++ G + P++G +
Sbjct: 12 VSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 49.8 bits (120), Expect = 5e-07
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P+L + +++ GY G L V+ ++ VAL+G NG GK+T L + G + P G++
Sbjct: 2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 238 LLE 240
+ +
Sbjct: 61 IFD 63
Score = 44.0 bits (105), Expect = 4e-05
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
L V+ ++ VAL+G NG GK+T L + G + P G +
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Score = 42.1 bits (100), Expect = 2e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPT 36
SGG + +++ARAL P LLLLDEP+
Sbjct: 138 SGGEQQMLAIARALMSRPKLLLLDEPS 164
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 49.8 bits (119), Expect = 5e-07
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLD---NYLQTWKKTLLVVSHDQ 65
FSGG + R + + LEP L +LDE + LD++A+ + N L+ K++ ++V+H Q
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
L+ I D +H+ + G+FTL K++ Q LT++
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 247
Score = 29.4 bits (66), Expect = 2.3
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 17/62 (27%)
Query: 202 GLDMESRV----ALVGPNGIGKSTFLNLLKG----ELTPN----KGKVLLEKVNFGLDME 249
GL++E R A++GPNG GKST L G E+T KGK LLE L E
Sbjct: 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE-----LSPE 73
Query: 250 SR 251
R
Sbjct: 74 DR 75
Score = 27.8 bits (62), Expect = 9.0
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 245 GLDMESRV----ALVGPNGIGKSTFLNLLKG--ELTPNKGELR-KSPRLRIGKFDQHSGE 297
GL++E R A++GPNG GKST L G + G + K L + +GE
Sbjct: 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78
Query: 298 HLF 300
+F
Sbjct: 79 GIF 81
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 49.6 bits (119), Expect = 6e-07
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI------WLDNYLQTWKKTLLVV 61
+ SGG R RV+LARAL +EP +LLLDEP LD A + WL T + V
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALD--AKVRKELRRWLRRLHDELHVTTVFV 193
Query: 62 SHDQS 66
+HDQ
Sbjct: 194 THDQE 198
Score = 48.5 bits (116), Expect = 2e-06
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 35/140 (25%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IG 289
L+ V+ + VAL+GP+G GK+T L L+ G P+ G + + R +G
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 290 KFDQHSGEHLFPDDT-----------------PCEYLMKLFNLPYEKSRRQLGMFGLPSY 332
QH LF T P E ++ K L + L
Sbjct: 78 FVFQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIR------AKVHELLKLVQLDWL 129
Query: 333 AHTIPIRDLSGGQKARVALA 352
A P LSGGQ+ RVALA
Sbjct: 130 ADRYP-AQLSGGQRQRVALA 148
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 49.6 bits (119), Expect = 6e-07
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
+E +GG R RV +ARAL P LLLLDEPT LD +
Sbjct: 131 RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Score = 46.1 bits (110), Expect = 7e-06
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 34/141 (24%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPR--- 285
+ L+ V+F + VAL+GPNG GKST +LL +G+ LR++PR
Sbjct: 14 RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL 73
Query: 286 LRIGK-FDQHSGEHLFPDDTPCEYLMKLFNLPYEK-----SRRQ--------LGMFGLPS 331
R+G F Q + L D L NL Y SR + L GL
Sbjct: 74 ARLGVVFQQPT---LDLD------LSVRQNLRYHAALHGLSRAEARARIAELLARLGLAE 124
Query: 332 YAHTIPIRDLSGGQKARVALA 352
A +R+L+GG + RV +A
Sbjct: 125 RADD-KVRELNGGHRRRVEIA 144
Score = 40.4 bits (95), Expect = 6e-04
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
++F Y G + L+ V+F + VAL+GPNG GKST +LL +G++ V
Sbjct: 6 GLSFRY-GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI---SVA 61
Query: 244 FGLDM--ESRVAL 254
G D+ R AL
Sbjct: 62 -GHDLRRAPRAAL 73
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 49.7 bits (119), Expect = 6e-07
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT-WKK---TLLVVSHDQ 65
SGG + RV+LARAL P LLLLDEP LD I + + +++ W++ T+L+V+HD
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194
Query: 66 S 66
S
Sbjct: 195 S 195
Score = 45.1 bits (107), Expect = 2e-05
Identities = 43/121 (35%), Positives = 52/121 (42%), Gaps = 36/121 (29%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
VA+VG +G GKST L LL G TP+ GEL G +DT LM
Sbjct: 41 VAVVGRSGCGKSTLLRLLAGLETPSAGELLA------GTAPLAEAR----EDT---RLM- 86
Query: 312 LFN----LPYEK----------------SRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
F LP++K + + L GL A+ P LSGGQK RVAL
Sbjct: 87 -FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA-LSGGQKQRVAL 144
Query: 352 A 352
A
Sbjct: 145 A 145
Score = 39.7 bits (93), Expect = 0.001
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 170 PNPPYLPPPV-LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
N L L L+ V+ Y G + +L +++ + VA+VG +G GKST L LL G
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60
Query: 229 ELTPNKGKVL 238
TP+ G++L
Sbjct: 61 LETPSAGELL 70
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.6 bits (118), Expect = 6e-07
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
++S SGG + R+ +ARA+ + P++LL+DEP + LD + ++ + KK T+++
Sbjct: 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVI 200
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
V+H+ + K F+Y G + KK++ KE T+ Y
Sbjct: 201 VTHNMQ-------QAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNY 244
Score = 35.8 bits (82), Expect = 0.026
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVL 238
DV F Y G L+ ++ ++ +S VA +GP+G GKSTFL L +L P +G++
Sbjct: 8 DVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 239 LEKVNF---GLDMESRVALVG-----PNGIGKSTFLNLLKG 271
++ N G+ ++ VG PN KS F N+ G
Sbjct: 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 49.6 bits (119), Expect = 6e-07
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 12/104 (11%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
SGG + R+ +ARAL +EP +LLLDEPT+ LD A ++ +Q KK T+++V+H+
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQ 205
Query: 68 LNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
I +D + F+Y G + ++++ +++ T++Y
Sbjct: 206 AARI-SD------RTAFFYDGELVEYGPTEQIFTNPKEKRTEDY 242
Score = 42.7 bits (101), Expect = 1e-04
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVL 238
++ Y G K L+ +N + AL+GP+G GKST L L +L P +GKVL
Sbjct: 6 NLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL 64
Query: 239 LEKVNF---GLD---MESRVALV--GPNGIGKSTFLNLLKG 271
+ + +D + RV +V PN S + N+ G
Sbjct: 65 FDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 49.1 bits (117), Expect = 7e-07
Identities = 50/138 (36%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELR-KSPRLRIGK 290
G LL VNF + V L+GP+G GKST L+ + G L GEL RL +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 291 FDQHSGEHLFPDDTPCEYLMK----LFNLPYE---KSRRQ-----LGMFGLPSYAHTIPI 338
Q LF D +L LF LP +RR L GL H P
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP- 132
Query: 339 RDLSGGQKARVALAELTL 356
LSGGQ+ARVAL L
Sbjct: 133 ATLSGGQRARVALLRALL 150
Score = 45.6 bits (108), Expect = 1e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL----NAVIWLDNYLQTWKKTLLVVSHD 64
SGG R RV+L RAL +P LLLDEP + LD+ W+ + ++ + V+HD
Sbjct: 136 SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 49.3 bits (118), Expect = 8e-07
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL- 286
L+ ++F ++ V +GPNG GK+T L +L G L P GE+R + +
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 287 -RIG-KFDQHSGEHLFPDDTPCE--YLMK-LFNLPYEKSRRQLG----MFGLPSYAHTIP 337
RIG F Q + L+ D + YL+ +++LP + +++L + L T P
Sbjct: 94 RRIGVVFGQKT--QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-P 150
Query: 338 IRDLSGGQKARVALA 352
+R LS GQ+ R +A
Sbjct: 151 VRQLSLGQRMRAEIA 165
Score = 47.7 bits (114), Expect = 2e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLL 59
++ S G R+R +A AL EP +L LDEPT LD+ A + N+L+ + + T+L
Sbjct: 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
Query: 60 VVSHDQSFLNNICTDIIHLDMKKLFY 85
+ SH + + ++ +D +L Y
Sbjct: 209 LTSHYMKDIEALARRVLVIDKGRLLY 234
Score = 42.7 bits (101), Expect = 1e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L+ ++F ++ V +GPNG GK+T L +L G L P G+V
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 48.8 bits (117), Expect = 8e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTL 58
++ E SGG + RV+LARA+ P L+L DEPT LD + V+ L L KT+
Sbjct: 128 LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTI 187
Query: 59 LVVSHDQSFLNNICTDIIHL 78
++V+HD + +I L
Sbjct: 188 IIVTHDPE-VAKQADRVIEL 206
Score = 46.8 bits (112), Expect = 4e-06
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 38/173 (21%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES 250
G KV+L+ +N ++ A++G +G GKST LN++ + G+V L
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET------ 62
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL- 309
N S F R ++G Q+ L ++T E L
Sbjct: 63 ----PPLNSKKASKFR------------------REKLGYLFQNFA--LIENETVEENLD 98
Query: 310 --MKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
+K L EK + L GL I +LSGG++ RVALA L
Sbjct: 99 LGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-KIYELSGGEQQRVALARAIL 150
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 49.4 bits (118), Expect = 8e-07
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHDQS 66
SGG + RV++ARAL +EP +LL DEPT LD ++ + L T ++V+H+
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202
Query: 67 FLNNICTDIIHLD 79
+ +++++
Sbjct: 203 VARKTASRVVYME 215
Score = 43.3 bits (102), Expect = 8e-05
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 30/127 (23%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSP--------RLRIGK-FDQ 293
+ L+GP+G GKS+ L +L P G L K+P R +G F Q
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 294 HSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
+ +L+P T E L ++ L +++ + L L YA P+ LSGGQ
Sbjct: 91 Y---NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQ 146
Query: 346 KARVALA 352
+ RVA+A
Sbjct: 147 QQRVAIA 153
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 50.0 bits (120), Expect = 8e-07
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSHDQ 65
SGG + RV+LARAL P LLLLDEP + LD L ++ ++ T ++V+HDQ
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Score = 41.9 bits (99), Expect = 3e-04
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIGKFD-----QHSGEHLFPD 302
V L+GP+G GK+T L ++ G G + R RL K D Q LFP+
Sbjct: 33 VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPN 90
Query: 303 DTPCEYL-MKLFNLPYEKSRRQ------LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + + L N ++ L + GLP P + LSGGQ+ RVALA
Sbjct: 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-LSGGQQQRVALA 146
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 50.4 bits (121), Expect = 9e-07
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 169 FPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227
FP P P L L +VTF Y + +N + + L+G NG GKST LL
Sbjct: 311 FPRPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370
Query: 228 GELTPNKGKVLLE 240
G P G++LL+
Sbjct: 371 GLYQPQSGEILLD 383
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 49.7 bits (119), Expect = 9e-07
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKK 56
+++ + SGG + RV+LARAL L+P +LL DEP ++LD N + + Q +
Sbjct: 129 FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188
Query: 57 TLLVVSHDQS 66
T L V+HDQS
Sbjct: 189 TSLYVTHDQS 198
Score = 33.2 bits (76), Expect = 0.19
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
G +++ +N + + V L+GP+G GK+T L L+ G P +G++ ++
Sbjct: 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Score = 32.8 bits (75), Expect = 0.27
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR- 287
+++ +N + + V L+GP+G GK+T L L+ G P +G++ +S + R
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79
Query: 288 IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRD 340
I Q LFP + E Y +K+ +P E+ +++ L + L + +
Sbjct: 80 ICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-VDQ 136
Query: 341 LSGGQKARVALA 352
+SGGQ+ RVALA
Sbjct: 137 ISGGQQQRVALA 148
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 50.3 bits (120), Expect = 9e-07
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+TF + + V+F VA+VGP G GK+T +NLL+ P G++L++
Sbjct: 337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396
Query: 242 VN 243
++
Sbjct: 397 ID 398
Score = 39.1 bits (91), Expect = 0.003
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
SGG R R+++ARA+ +L+LDE T+ LD+ + N + +K T +++H
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530
Query: 66 SFLNNICTD-IIHLDMKKLFYYKGNF 90
S + N D ++ LD +L KG+F
Sbjct: 531 STVRN--ADLVLFLDQGRLI-EKGSF 553
Score = 36.8 bits (85), Expect = 0.015
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 25/94 (26%)
Query: 228 GELTPNKGKVLLEKVNFGLDMESR--------------VALVGPNGIGKSTFLNLLKGEL 273
EL KG V + F S+ VA+VGP G GK+T +NLL+
Sbjct: 326 PELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385
Query: 274 TPNKGEL-----------RKSPRLRIGKFDQHSG 296
P G++ R+S R I Q +G
Sbjct: 386 DPTVGQILIDGIDINTVTRESLRKSIATVFQDAG 419
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 48.7 bits (116), Expect = 9e-07
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHD 64
E SGG R RV +ARAL P++LLLDEP LD+ L +L+ +HD
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Score = 38.7 bits (90), Expect = 0.002
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRIGKFDQHSGEHLFPDDTP 305
+ L+GPNG GK+T L + G + P KG ++ IG Q H F D P
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQ---RHEFAWDFP 65
Query: 306 CEY----------LMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
+ P + R L GL A P+ +LSGGQ+ RV +
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRVLV 124
Query: 352 A 352
A
Sbjct: 125 A 125
Score = 32.9 bits (75), Expect = 0.18
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ L+GPNG GK+T L + G + P KG V +
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKV 39
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 50.0 bits (120), Expect = 1e-06
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 184 DVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+VTF YPG +V L +NF + VALVG +G GKST NLL ++G++LL+
Sbjct: 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405
Query: 243 N---FGL-DMESRVALVGPN 258
+ + L + ++VALV N
Sbjct: 406 DLRDYTLASLRNQVALVSQN 425
Score = 40.4 bits (95), Expect = 0.001
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
SGG R R+++ARAL + +L+LDE T+ LD + + L +K T LV++H
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Score = 37.3 bits (87), Expect = 0.010
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 40/151 (26%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELR--- 281
P K L +NF + VALVG +G GKST NLL +GE+ + +LR
Sbjct: 352 PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT 411
Query: 282 -KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK----SRRQLGMFGLPSYA--- 333
S R ++ Q+ HLF +DT N+ Y + SR Q+ +YA
Sbjct: 412 LASLRNQVALVSQNV--HLF-NDTIAN------NIAYARTEQYSREQIEEAARMAYAMDF 462
Query: 334 --------HTIPIRD----LSGGQKARVALA 352
T+ I + LSGGQ+ R+A+A
Sbjct: 463 INKMDNGLDTV-IGENGVLLSGGQRQRIAIA 492
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 48.9 bits (117), Expect = 1e-06
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHDQS 66
SGG + RV++ARAL +EP +LL DEPT LD ++ + L T ++V+H+
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202
Query: 67 FLNNICTDIIHLD 79
+ +++++
Sbjct: 203 VARKTASRVVYME 215
Score = 42.3 bits (100), Expect = 1e-04
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 32/128 (25%)
Query: 252 VALVGPNGIGKSTF---LNLLK----GEL-----------TPNKGELRKSPRLRIGK-FD 292
+ L+GP+G GKS+ LNLL+ G L TP+ +R+ R +G F
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL-RRNVGMVFQ 89
Query: 293 QHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGG 344
Q+ +L+P T + L ++ L +++ + L L YA P+ LSGG
Sbjct: 90 QY---NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LSGG 145
Query: 345 QKARVALA 352
Q+ RVA+A
Sbjct: 146 QQQRVAIA 153
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 48.9 bits (117), Expect = 1e-06
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY---LQTWKKT 57
+ ++ + SGG R R LA L + ++LLDEPT +LD+N + L L T KT
Sbjct: 131 LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190
Query: 58 LLVVSHDQSFLNNICTDIIHL 78
++ V HD LN HL
Sbjct: 191 VVTVLHD---LNQASRYCDHL 208
Score = 43.8 bits (104), Expect = 5e-05
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
L+D++ P GK+ AL+GPNG GKST L LTP G V L
Sbjct: 18 LNDLSLSLPTGKI--------------TALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Score = 40.0 bits (94), Expect = 0.001
Identities = 44/163 (26%), Positives = 56/163 (34%), Gaps = 49/163 (30%)
Query: 216 GIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275
G G LN L L+ GK+ AL+GPNG GKST L LTP
Sbjct: 11 GYGTKRILNDL--SLSLPTGKI--------------TALIGPNGCGKSTLLKCFARLLTP 54
Query: 276 NKGEL--------RKSPRL---RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------- 317
G + S R R+ QH HL P+ L+ P+
Sbjct: 55 QSGTVFLGDKPISMLSSRQLARRLALLPQH---HLTPEGITVRELVAYGRSPWLSLWGRL 111
Query: 318 ---EKSRRQLGMFGLPSYAHTI-----PIRDLSGGQKARVALA 352
+ +R M + DLSGGQ+ R LA
Sbjct: 112 SAEDNARVNQAM----EQTRINHLADRRLTDLSGGQRQRAFLA 150
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 48.4 bits (116), Expect = 1e-06
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHDQ 65
FSGG + R + + LEP L +LDE + LD++A+ + + + ++ L+++H Q
Sbjct: 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204
Query: 66 SFLNNICTDIIHL 78
LN I D +H+
Sbjct: 205 RLLNYIKPDYVHV 217
Score = 30.7 bits (70), Expect = 0.91
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG----ELTPNKGKVLLEKVNFGL 246
K +L+ VN + A++GPNG GKST + G E+T G +L + + L
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT--SGTILFKGQDL-L 67
Query: 247 DME 249
++E
Sbjct: 68 ELE 70
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 252 VALVGPNGIGKSTFLNLLKG 271
A++GPNG GKST + G
Sbjct: 29 HAIMGPNGSGKSTLSKTIAG 48
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 48.6 bits (116), Expect = 1e-06
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHD 64
E SGG + RV++ARAL ++P L+L DEPT+ LD + V+ + L T+++V+H+
Sbjct: 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195
Query: 65 QSFLNNICTDIIHLD 79
F + + +I +D
Sbjct: 196 IGFAEKVASRLIFID 210
Score = 48.2 bits (115), Expect = 2e-06
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRIGK 290
+L ++ +D V ++GP+G GKST L + G+L P++
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 291 FDQHSGE-----HLFPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAHTIP 337
Q +G +LFP T E +M ++ E++ +Q L GL AH P
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP 134
Query: 338 IRDLSGGQKARVALA 352
+LSGGQ+ RVA+A
Sbjct: 135 -SELSGGQQQRVAIA 148
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 49.2 bits (118), Expect = 1e-06
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVV 61
FSGG R R+++ARAL L+P +++ DEP + LD LN ++ L L + + +
Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL---SYVFI 211
Query: 62 SHDQSFLNNICTDII 76
SHD S + +I +++
Sbjct: 212 SHDLSVVEHIADEVM 226
Score = 28.8 bits (65), Expect = 4.1
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
L+ V+F L+ +A+VG +G GKST LL TP GEL
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY 73
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 49.6 bits (119), Expect = 2e-06
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 161 REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESR-------VALVG 213
R ++F PP D YP K +F L++E + ++G
Sbjct: 322 RPEEIEFEEK-----PPRDDKARDTLVEYPDLKKTYG--DFKLEVEEGEIYDGEVIGILG 374
Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
PNGIGK+TF+ LL G + P++G KV++
Sbjct: 375 PNGIGKTTFVKLLAGVIKPDEGSEEDLKVSY 405
Score = 49.2 bits (118), Expect = 2e-06
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 14/54 (25%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
TP GKV V ++GPNGIGKST L +L GEL PN G P
Sbjct: 96 TPRPGKV--------------VGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Score = 48.4 bits (116), Expect = 4e-06
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 35/117 (29%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG--------KFDQHSGEHLFPDD 303
+ ++GPNGIGK+TF+ LL G + P++G L++ +D + E L
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEG---SEEDLKVSYKPQYISPDYD-GTVEDLLRSA 425
Query: 304 TPCEY--------LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ ++K NL R P+ +LSGG+ RVA+A
Sbjct: 426 IRSAFGSSYFKTEIVKPLNLEDLLER---------------PVDELSGGELQRVAIA 467
Score = 48.1 bits (115), Expect = 4e-06
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGK 236
V ++GPNGIGKST L +L GEL PN G+
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGR 130
Score = 41.9 bits (99), Expect = 3e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
E+ E SGG RV++A AL E L LLDEP+ +LD + + +++ +KT
Sbjct: 450 ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509
Query: 59 LVVSHDQSFLNNICTDII 76
LVV HD ++ + +I
Sbjct: 510 LVVDHDIYMIDYVSDRLI 527
Score = 41.5 bits (98), Expect = 5e-04
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
++ E SGG RV++A AL + + DEP+++LD LNA + + K +
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266
Query: 59 LVVSHDQSFLNNICTDIIH 77
+VV HD + L+ + +D +H
Sbjct: 267 IVVEHDLAVLDYL-SDFVH 284
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 49.6 bits (119), Expect = 2e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 185 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
VTF Y P G ++L+ V+ ++ VA+VGP+G GKST L LL G TP G V
Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+ +ARAL +P +LL DE T+ LD
Sbjct: 590 SGGQRQRLLIARALVRKPRILLFDEATSALD 620
Score = 38.8 bits (91), Expect = 0.003
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
G ++L+ V+ ++ VA+VGP+G GKST L LL G TP G
Sbjct: 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 49.0 bits (117), Expect = 2e-06
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKT 57
++ E SGG + RV LARA E +LL+DEP + LD L D L+ KKT
Sbjct: 158 ADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKT 217
Query: 58 LLVVSHD 64
++ VSHD
Sbjct: 218 IVFVSHD 224
Score = 29.0 bits (65), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
++ QL + GL +A P +LSGG + RV LA
Sbjct: 143 KRVDEQLELVGLAQWADRKP-GELSGGMQQRVGLA 176
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 48.2 bits (115), Expect = 2e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTW 54
+ K+ E SGG + R+SL R L P +LLLDE T+ LD +N +I Y++
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII--HRYVREQ 187
Query: 55 KKTLLVVSHDQSFLNNICTDIIHL 78
+L V+HD+ +N+ +I L
Sbjct: 188 NIAVLWVTHDKDEINH-ADKVITL 210
Score = 47.0 bits (112), Expect = 4e-06
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 31/139 (22%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
+L ++F L + GP+G GKST L ++ ++P G L F+
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL---------FEGE 69
Query: 295 SGEHLFPDD-----TPCEYLMKLF------NL--PYE---------KSRRQLGMFGLPSY 332
L P+ + C LF NL P++ L F LP
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT 129
Query: 333 AHTIPIRDLSGGQKARVAL 351
T I +LSGG+K R++L
Sbjct: 130 ILTKNIAELSGGEKQRISL 148
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P+L L +V + G +L ++F L + GP+G GKST L ++ ++P G +
Sbjct: 6 PLLQLQNVGY-LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 238 LLE 240
L E
Sbjct: 65 LFE 67
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 48.2 bits (115), Expect = 2e-06
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKTLLVVSHDQ 65
FSGG + RV++AR + +LLLDEPT LD V+ L + L+ + HD+
Sbjct: 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209
Query: 66 SFLNNICT 73
+
Sbjct: 210 EVRELVAD 217
Score = 35.1 bits (81), Expect = 0.038
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 191 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
GG L L+ V+ ++ VAL GP+G GKST L L P+ G++L
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66
Score = 32.0 bits (73), Expect = 0.33
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 216 GIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275
+ K+ L+ G P +L+ V+ ++ VAL GP+G GKST L L P
Sbjct: 6 DLSKTFTLHQQGGVRLP-----VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP 60
Query: 276 NKGELR 281
+ G +
Sbjct: 61 DSGRIL 66
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 48.4 bits (115), Expect = 2e-06
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
+K+ SGG + R+ +AR L +EP +LLLDEPT+ LD A +++ +Q + T+++
Sbjct: 177 DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
V+H+ + + +F+Y+G +++ + +T++Y
Sbjct: 237 VTHNMQQASRVSD-------YTMFFYEGVLVEHAPTAQLFTNPKDRMTEDY 280
Score = 29.1 bits (65), Expect = 3.5
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---------KGKVLLEKVNF 244
++KVN + + A++GP+G GKSTFL + +L P+ G+ + K
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 245 GLDMESRVALV--GPNGIGKSTFLNLLKG 271
+ + ++ +V PN KS F N+ G
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 48.6 bits (116), Expect = 2e-06
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
+ SGG + RV+LARAL +P +LLLDEP + LD + L+T ++ T + V+H
Sbjct: 100 QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
Query: 64 DQS 66
DQ
Sbjct: 160 DQE 162
Score = 47.1 bits (112), Expect = 6e-06
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKS--------PRLR-IGKFDQHSGEHLFPDDT 304
L+GP+G GK+T L LL G P+ G + P LR I Q LFP T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMT 58
Query: 305 PCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E + +K+ +P + L + L +A P + LSGGQ+ RVALA
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVALA 112
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 48.6 bits (115), Expect = 2e-06
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
+K+ SGG + R+ +ARA+ LEP +LL+DEPT+ LD A ++ + KK ++++
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKG---NFTLFKKMYVQKRKELTKEY 108
V+H + I + + F+Y+G K +++ + + TK+Y
Sbjct: 280 VTHSMAQAQRISDETV-------FFYQGWIEEAGETKTIFIHPKNKRTKDY 323
Score = 30.9 bits (69), Expect = 0.89
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-----ELTPNKGEL 280
N+ K +L +N + A +GP+G GKSTFL L E T ++GE+
Sbjct: 92 NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144
Score = 30.1 bits (67), Expect = 1.9
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-----ELTPNKGKVLLEKVNF--- 244
K +L +N + A +GP+G GKSTFL L E T ++G++ N
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 245 ---GLDMESRVALV--GPNGIGKSTFLNLLKG 271
L++ +R+ +V P S F N+ G
Sbjct: 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.1 bits (114), Expect = 2e-06
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +ARAL +EP +LL+DEPT+ LD + +++ + KK T+++V+H+
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
Score = 38.1 bits (88), Expect = 0.004
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN- 233
+L DV Y G K ++ VN + + AL+GP+G GK+TFL + +LTP
Sbjct: 2 TLLLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60
Query: 234 --KGKVLLEKVNF---GLD---MESRVALV--GPNGIGK-STFLNLLKG 271
G++LL+ + +D M RV +V PN S F N++ G
Sbjct: 61 RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG 109
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 47.8 bits (114), Expect = 2e-06
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKK---T 57
+K + SGG + RV++ARAL + P +LLLDEP LD L + +Q W++ T
Sbjct: 108 ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167
Query: 58 LLVVSHD 64
+L+V+HD
Sbjct: 168 VLMVTHD 174
Score = 37.8 bits (88), Expect = 0.004
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL-------RIGKF 291
L+ VN + ++L+G +G GKST LNL+ G P G + + R+ F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 292 DQHSGEHLFPDDTPCEYLM-----KLFNLPYEKSRR----QLGMFGLPSYAHTIPIRDLS 342
+S L P T E + L +L + R + + GL A LS
Sbjct: 61 QNYS---LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-RPGQLS 116
Query: 343 GGQKARVALA 352
GG K RVA+A
Sbjct: 117 GGMKQRVAIA 126
Score = 35.1 bits (81), Expect = 0.032
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
L+ VN + ++L+G +G GKST LNL+ G P G V+LE
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE 45
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 48.2 bits (115), Expect = 3e-06
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
EFSGG R+ +ARAL LEP L++ DEP + LD++ + N LQ ++ +L+ ++H
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220
Query: 64 DQSFLNNI 71
D + + +I
Sbjct: 221 DLAVVKHI 228
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 48.1 bits (114), Expect = 3e-06
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
L +V++ YP G LE +N + + ++G NG GKST L G L P KGKVL+
Sbjct: 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
Query: 242 VNFG 245
++ G
Sbjct: 64 IDTG 67
Score = 35.0 bits (80), Expect = 0.043
Identities = 45/137 (32%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------RKSP 284
G LE +N + + ++G NG GKST L G L P KG++ K
Sbjct: 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQ 73
Query: 285 RLR--IGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR----RQLGMFGLPSYAHT 335
+R +G Q+ E F T E L + LP + R R L GL Y H
Sbjct: 74 GIRKLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR 132
Query: 336 IPIRDLSGGQKARVALA 352
P + LSGGQ VALA
Sbjct: 133 SP-KTLSGGQGQCVALA 148
Score = 31.1 bits (70), Expect = 0.79
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKTLLV 60
+S K SGG V+LA L +EP L+ DE T+ LD + AV+ L KT++
Sbjct: 132 RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVY 191
Query: 61 VSHD 64
++H+
Sbjct: 192 ITHN 195
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 47.8 bits (114), Expect = 3e-06
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 288
GK LE +N L+ + ++GP+G GK+T LNL+ G + G + + P
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER 72
Query: 289 GKFDQHSGEHLFP-----DDTPCEYLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIR 339
G Q+ G L P D+ + ++L + + + L GL I
Sbjct: 73 GVVFQNEG--LLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-YIW 127
Query: 340 DLSGGQKARVALA 352
LSGGQ+ RV +A
Sbjct: 128 QLSGGQRQRVGIA 140
Score = 44.3 bits (105), Expect = 3e-05
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN-YLQTWKKT---LLVVSH 63
+ SGG R RV +ARAL P LLLLDEP LD + L+ W++T +L+++H
Sbjct: 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187
Query: 64 D 64
D
Sbjct: 188 D 188
Score = 43.1 bits (102), Expect = 8e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
GGK LE +N L+ + ++GP+G GK+T LNL+ G + G + L+
Sbjct: 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 47.3 bits (113), Expect = 4e-06
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLRIGK--FDQHSGEHLF 300
RVA++GP+G GKST LNL+ G LTP G L P R F +++ LF
Sbjct: 27 RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN---LF 83
Query: 301 PDDTPCEYL-------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + + +KL EK G+ +P LSGGQ+ RVALA
Sbjct: 84 SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-GQLSGGQRQRVALA 141
Score = 45.3 bits (108), Expect = 2e-05
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L L D+T+ Y L + + ++ RVA++GP+G GKST LNL+ G LTP G + L
Sbjct: 2 LKLTDITWLYHH---LPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58
Query: 240 EKVN 243
+
Sbjct: 59 NGQD 62
Score = 43.8 bits (104), Expect = 5e-05
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVSH 63
+ SGG R RV+LAR L E +LLLDEP + LD L + + Q + TLL+VSH
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 45.9 bits (110), Expect = 4e-06
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EKVNFGL 246
+ G K L + V+ + AL+G NG GKST + +L G P+ G++L+ ++V+F
Sbjct: 10 FGGVKAL-DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS 68
Query: 247 DMESR---VALV 255
++R +A+V
Sbjct: 69 PRDARRAGIAMV 80
Score = 40.9 bits (97), Expect = 2e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
AL+G NG GKST + +L G P+ GE+
Sbjct: 29 HALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Score = 40.9 bits (97), Expect = 2e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
S G R V +ARAL LL+LDEPT L V L ++ + ++ +SH
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 47.5 bits (113), Expect = 4e-06
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 28/159 (17%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EKVNFGLDMESRVA 253
++ V+F L +A++G NG GKST +L G + P G++L+ ++FG D R
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG-DYSFRSK 87
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 313
+ +T LN PRLRIG+ L D P + ++F
Sbjct: 88 RIRMIFQDPNTSLN----------------PRLRIGQI-LDFPLRLNTDLEPEQRRKQIF 130
Query: 314 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ R +G+ LP +A+ P L+ GQK RVALA
Sbjct: 131 E-----TLRMVGL--LPDHANYYP-HMLAPGQKQRVALA 161
Score = 34.8 bits (80), Expect = 0.043
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN 49
+ G + RV+LARAL L P +++ DE LD++ L N
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 48.1 bits (115), Expect = 4e-06
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 147 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGL 203
D ++ +LL+ E V P+ P L P LG +V+F Y + +L ++F +
Sbjct: 230 LTDMEKMFDLLDVEAE--VSDA-PDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTI 286
Query: 204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ VA+VG +G GKST L LL N G + +
Sbjct: 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITI 322
Score = 38.9 bits (91), Expect = 0.003
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + RV++AR + P +L+LDE T+ LD +
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHT 434
Score = 30.0 bits (68), Expect = 2.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
+ + +L ++F + + VA+VG +G GKST L LL N G
Sbjct: 272 YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 47.7 bits (114), Expect = 4e-06
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSP-- 284
K ++ VN ++ + L+GP+G GK+T L ++ + P GE +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 285 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQ------LGMFGLP--SYA 333
R +IG Q G LFP T E + + L ++K R + L + GL YA
Sbjct: 72 ELRRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA 129
Query: 334 HTIPIRDLSGGQKARVALA 352
P +LSGGQ+ RV +A
Sbjct: 130 DRYP-HELSGGQQQRVGVA 147
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVS 62
E SGG + RV +ARAL +P +LL+DEP LD + + KT++ V+
Sbjct: 134 HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT 193
Query: 63 HD 64
HD
Sbjct: 194 HD 195
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 47.5 bits (113), Expect = 4e-06
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRIGKFDQHSGEHLFPDD 303
L+GPNG GK+T L +L G P+ G + + R R+G Q ++L PD
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQF--DNLDPDF 95
Query: 304 TPCEYLM---KLFNLPYEKSRRQLGMF----GLPSYAHTIPIRDLSGGQKARVALA 352
T E L+ + F L +R + L + A + +LSGG K R+ LA
Sbjct: 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-KVGELSGGMKRRLTLA 150
Score = 46.7 bits (111), Expect = 7e-06
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIW--LDNYLQTWKKTLLVVS 62
E SGG + R++LARAL +P +L+LDEPT LD A ++W L + L KT+L+ +
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTT 195
Query: 63 H 63
H
Sbjct: 196 H 196
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 47.5 bits (113), Expect = 5e-06
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIWLD-NYLQTWKKTLLVVSH 63
+ SGG + R++LARAL +P LL+LDEPT LD +A +IW L KT+L+ +H
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
Score = 42.1 bits (99), Expect = 3e-04
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSP 284
K ++ ++F + L+GPNG GKST ++ G +P+ G++ +
Sbjct: 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHTI 336
R RIG Q ++L + T E L+ +F + S R+ L L S A
Sbjct: 113 RARIGVVPQF--DNLDLEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168
Query: 337 PIRDLSGGQKARVALA 352
+ DLSGG K R+ LA
Sbjct: 169 RVSDLSGGMKRRLTLA 184
Score = 41.0 bits (96), Expect = 6e-04
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 142 RKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 201
R ++ +E+ + I + + P + + L V+ Y G K ++ ++F
Sbjct: 4 RAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSF 62
Query: 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ L+GPNG GKST ++ G +P+ GK+
Sbjct: 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 47.4 bits (113), Expect = 5e-06
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK---TLLVV 61
+SGG R R+ +A +L +P +L LDEPT LD IW +Y++ K+ T+L+
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW--DYIRALKEEGVTILLT 180
Query: 62 SHDQSFLNNICTDIIHLDMKKL 83
+H + +C I +D ++
Sbjct: 181 THYMEEADKLCDRIAIIDHGRI 202
Score = 42.4 bits (100), Expect = 2e-04
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRL---RI 288
++ VNF + +GPNG GK+T + +L L P G R + PR I
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68
Query: 289 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDL 341
G Q++ + D T E L +L+ LP E++ L +F L A P+
Sbjct: 69 GIVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTY 125
Query: 342 SGGQKARVALA 352
SGG + R+ +A
Sbjct: 126 SGGMRRRLDIA 136
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.8 bits (111), Expect = 5e-06
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ--TWKKTLLV 60
K SGG + R+ +ARAL +EP ++LLDEPT+ LD A ++ L+ + T+++
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
V+H+ I D I F Y+G + +++ + + +LT+EY
Sbjct: 201 VTHNIGQAIRI-ADYI------AFMYRGELIEYGPTREIVERPKNKLTEEY 244
Score = 30.3 bits (68), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
Y G K ++ V + A++GP+G GK+T L
Sbjct: 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL 46
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.6 bits (111), Expect = 6e-06
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
KS SGG + R+ +ARAL +EP +LL+DEPT+ LD + + ++ +Q KK T+++V
Sbjct: 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIV 201
Query: 62 SHD 64
+H+
Sbjct: 202 THN 204
Score = 37.8 bits (88), Expect = 0.005
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVN 243
+ G L+K+N ++ AL+GP+G GKSTFL L +L P+ +G+VLL+ +
Sbjct: 12 FYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD 71
Query: 244 -FGLDME-----SRVALV--GPNGIGKSTFLNLLKG 271
+ D++ RV +V PN S + N+ G
Sbjct: 72 IYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 46.6 bits (111), Expect = 8e-06
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
EFSGG R RV +A AL P LL+ DEPT LD+ + L K+ +++++H
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
Query: 64 DQSFLNNIC 72
D + IC
Sbjct: 221 DLGVVAGIC 229
Score = 30.1 bits (68), Expect = 1.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 177 PPVLGLHD--VTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233
+L + D VTF P G V + +NF L + +VG +G GKS L G L N
Sbjct: 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 47.2 bits (113), Expect = 9e-06
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 31/138 (22%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP---- 284
V + V+ + AL+G NG GKST + +L G P+ GE+R KSP
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSR-------RQLGMFGLPS 331
RL IG QH L P T E ++ K + ++R + G+ +
Sbjct: 78 RLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP-VDP 134
Query: 332 YAHTIPIRDLSGGQKARV 349
A + DLS G++ RV
Sbjct: 135 DAK---VADLSVGEQQRV 149
Score = 44.1 bits (105), Expect = 7e-05
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
P L + +T +PG V + V+ + AL+G NG GKST + +L G P+ G+
Sbjct: 2 EPALEMRGITKRFPG-VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 237 VLL--EKVNFG 245
+ + ++V
Sbjct: 61 IRVDGKEVRIK 71
Score = 36.0 bits (84), Expect = 0.030
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK------KTLLVV 61
+ S G + RV + +AL+ LL+LDEPT L D + + KT++ +
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA---DELFEILRRLAAEGKTIIFI 196
Query: 62 SH 63
+H
Sbjct: 197 TH 198
Score = 32.1 bits (74), Expect = 0.41
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
+ SGG + ++ LAR L P LL+ +PT LD+ A+
Sbjct: 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439
Score = 31.7 bits (73), Expect = 0.52
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 165 VKFRFPNPPYLP-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
V R PP P VL + D++ G ++ V+F + V + G G G+S +
Sbjct: 242 VVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 224 NLLKGELTPNKGKVLL 239
+ G P G++LL
Sbjct: 302 EAISGLRKPASGRILL 317
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 46.8 bits (111), Expect = 9e-06
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 1 MQE---KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLD--NYLQT 53
MQE + + SGG R RV+LAR+L P LLLLDEP LD L + L+ + L+
Sbjct: 139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198
Query: 54 WKKTLLVVSHDQ 65
T ++V+HDQ
Sbjct: 199 VGVTCVMVTHDQ 210
Score = 38.7 bits (90), Expect = 0.003
Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IGKFDQHSGEHLFPDD 303
AL+G +G GKST L +L G P G++ P R I Q LFP
Sbjct: 49 ALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHM 106
Query: 304 T---PCEYLMKLFNLPY-EKSRR---QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + +K LP E + R LG+ + +A P LSGGQ+ RVALA
Sbjct: 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-HQLSGGQRQRVALA 161
Score = 37.9 bits (88), Expect = 0.006
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P+L + ++T + G+ ++ V+ + AL+G +G GKST L +L G P G++
Sbjct: 18 PLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 238 LLEKVNFGLDM 248
+L+ G+D+
Sbjct: 77 MLD----GVDL 83
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 46.3 bits (110), Expect = 9e-06
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTL 58
+K ++ SGG R+++ARAL ++P L++LDE ++LD L AVI L Q +
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAY 204
Query: 59 LVVSHDQSFLNNICTDIIHLD 79
L ++HD + + C + +D
Sbjct: 205 LFITHDLRLVQSFCQRVAVMD 225
Score = 33.6 bits (77), Expect = 0.12
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 34/145 (23%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------------R 281
+L V+ ++ V L+G +G GKST LL G P +G + R
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83
Query: 282 KSPRLRIGKFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQ------LGMFG 328
++ R + Q S + P T P +L L ++S ++ L M G
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL-----DESEQKARIAELLDMVG 138
Query: 329 LPS-YAHTIPIRDLSGGQKARVALA 352
L S A +P R LSGGQ R+ +A
Sbjct: 139 LRSEDADKLP-RQLSGGQLQRINIA 162
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 46.6 bits (111), Expect = 9e-06
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
++ K SGG R RV++ R L EP++ LLDEP ++LD + I + + +T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 59 LVVSHDQ 65
+ V+HDQ
Sbjct: 188 IYVTHDQ 194
Score = 31.5 bits (72), Expect = 0.57
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 235 GKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGEL 280
G V++ K + LD+ V VGP+G GKST L ++ G G+L
Sbjct: 14 GDVVISK-DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL 60
Score = 31.5 bits (72), Expect = 0.69
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKG 228
L +VT Y G V++ K + LD+ V VGP+G GKST L ++ G
Sbjct: 6 LRNVTKAY--GDVVISK-DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 46.2 bits (109), Expect = 9e-06
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK----KTLL 59
KS + SGG + R+ +ARAL ++P +LL+DEP LD A + +++ +Q+ + T++
Sbjct: 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMV 205
Query: 60 VVSHDQSFLNNICTDIIHLDMKKLFYYKGN-------FTLFKKMYVQKRKELTKEYEL 110
+VSH+ ++ + D F N F L KK++ T+EY L
Sbjct: 206 IVSHNLHQVSRLS------DFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRTREYVL 257
Score = 33.1 bits (75), Expect = 0.15
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P + +++++F Y K+L E V+ + A++GP+G GKSTFL L + + +V
Sbjct: 6 PAIKVNNLSFYYDTQKIL-EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEV 63
Query: 238 LLE-KVNF 244
+E +V F
Sbjct: 64 RVEGRVEF 71
Score = 28.8 bits (64), Expect = 3.9
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 286
+LE V+ + A++GP+G GKSTFL L + + E+R R+
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEVRVEGRV 69
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 47.1 bits (112), Expect = 9e-06
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 169 FPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227
FP P P L L +V F Y + +N + V L+G NG GKST LL
Sbjct: 311 FPRPQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT 370
Query: 228 GELTPNKGKVLLE 240
G P G++LL+
Sbjct: 371 GLYQPQSGEILLD 383
Score = 38.2 bits (89), Expect = 0.006
Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 32/120 (26%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLRIGKFDQ-HSGEHLFPD 302
V L+G NG GKST LL G P GE+ + F S HLF
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ 411
Query: 303 DTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRD-------LSGGQKARVAL 351
L+ EK ++L + AH + D LS GQK R+AL
Sbjct: 412 ------LLGPEGKASPQLIEKWLQRLEL------AHKTSLNDGRFSNLKLSTGQKKRLAL 459
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 45.6 bits (109), Expect = 1e-05
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 40/175 (22%)
Query: 186 TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
FG GGKV L+ V+ + ++G +G GKST + + G P G VL++
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD---- 65
Query: 245 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 304
G D+ + ELRK+ R RIG QH +L T
Sbjct: 66 GTDLTLL------------------------SGKELRKA-RRRIGMIFQHF--NLLSSRT 98
Query: 305 PCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E +++ +P E+ L + GL A P LSGGQK RV +A
Sbjct: 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-AQLSGGQKQRVGIA 152
Score = 44.1 bits (105), Expect = 3e-05
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-------TLLV 60
+ SGG + RV +ARAL P +LL DE T+ LD + L + T+++
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QSILALLRDINRELGLTIVL 196
Query: 61 VSHDQSFLNNICTDIIHLD 79
++H+ + IC + ++
Sbjct: 197 ITHEMEVVKRICDRVAVME 215
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 45.8 bits (109), Expect = 1e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
+ LVGPNGIGKST L +L G+L PN G+ P
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPP 61
Score = 45.8 bits (109), Expect = 1e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGK 236
+ LVGPNGIGKST L +L G+L PN GK
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGK 56
Score = 38.1 bits (89), Expect = 0.004
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
+++ + SGG RV++A AL + DEP+++LD LNA L L +
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYV 192
Query: 59 LVVSHDQSFLNNICTDIIH 77
LVV HD + L+ + +D IH
Sbjct: 193 LVVEHDLAVLDYL-SDYIH 210
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 46.5 bits (110), Expect = 1e-05
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-----TLLVVS 62
+ SGG + R+++ARA+ +EP +LLLDEP + LD N + + + T+L V+
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT 196
Query: 63 HDQS 66
HDQ
Sbjct: 197 HDQD 200
Score = 39.2 bits (91), Expect = 0.002
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD-Q 293
+L+ ++ ++ +AL+G +G GK+T L + G + + R+ I D
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG----LTGRIAIADRDLT 72
Query: 294 HSGEH------------LFPDDTPCEYLMKLFNLPYEKSRRQ------------LGMFGL 329
H+ H LFP + + F L ++++ L + GL
Sbjct: 73 HAPPHKRGLALLFQNYALFPHLKVEDNVA--FGL---RAQKMPKADIAERVADALKLVGL 127
Query: 330 PSYAHTIPIRDLSGGQKARVALA 352
A +P LSGG + R+A+A
Sbjct: 128 GDAAAHLP-AQLSGGMQQRIAIA 149
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 45.6 bits (109), Expect = 1e-05
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
SGG + R+ +ARAL ++P +LL+DEPT+ LD + + ++ + KK T+++V+H
Sbjct: 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH---- 206
Query: 68 LNNI-----CTDIIHLDMKKLFYYKGN---FTLFKKMYVQKRKELTKEY 108
N+ +D F+Y G F K++ + + T++Y
Sbjct: 207 --NMQQAARVSDYT------AFFYLGELVEFGPTDKIFTNPKHKRTEDY 247
Score = 39.1 bits (92), Expect = 0.002
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPN- 233
P + + D+ Y G K L+ +N + AL+GP+G GKST L N + +L P
Sbjct: 6 PAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM-NDLIPGA 63
Query: 234 --KGKVLLEKVN 243
+G+VLL+ N
Sbjct: 64 RVEGEVLLDGKN 75
Score = 32.1 bits (74), Expect = 0.31
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFL 266
L+ +N + AL+GP+G GKST L
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLL 50
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 45.6 bits (108), Expect = 1e-05
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLV 60
+ SGG + RV++ARAL + P ++L DE T+ LD LN VI T+L+
Sbjct: 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIR--RLASEHDLTMLL 202
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKG 88
V+H+ F + F+ KG
Sbjct: 203 VTHEMGFAREFADRV-------CFFDKG 223
Score = 44.4 bits (105), Expect = 3e-05
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 31/178 (17%)
Query: 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
DVT + G +L+ +NF + +VAL+GP+G GKST L +L ++G++ +E
Sbjct: 4 SDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62
Query: 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 302
M R G L P + + R +IG Q +LFP
Sbjct: 63 QL-YHMPGR------------------NGPLVPADEKHLRQMRNKIGMVFQSF--NLFPH 101
Query: 303 ----DTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
D E + + + ++ ++ L M GL A +P + LSGGQ+ RVA+A
Sbjct: 102 KTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIA 158
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 44.1 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQS 66
SGG + R++ AR L +P + LDE T+ LD + L L+ T++ V H S
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149
Query: 67 FLNNICTDIIHLD 79
L ++ LD
Sbjct: 150 -LWKFHDRVLDLD 161
Score = 41.4 bits (98), Expect = 2e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
+ L +++ P G+VLL+ ++F + R+ + GP+G GKS+ L G
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49
Score = 35.6 bits (83), Expect = 0.014
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 40/132 (30%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
TP+ G+VLL+ ++F + R+ + GP+G GKS+ L L P G+
Sbjct: 10 TPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWP----------WGSGR 57
Query: 291 FDQHSGEHLFPDDTPCEYL-----MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD-LSGG 344
GE L +L + L L R QL Y P D LSGG
Sbjct: 58 IGMPEGEDLL-------FLPQRPYLPLGTL-----REQL------IY----PWDDVLSGG 95
Query: 345 QKARVALAELTL 356
++ R+A A L L
Sbjct: 96 EQQRLAFARLLL 107
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 45.4 bits (108), Expect = 2e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
++ + +V+F YP L+ V+F ++ VA++G NG GKST +L G L P G+
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 237 VLLEKVNFGLDMES 250
+ + G+ +
Sbjct: 66 IKI----DGITISK 75
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
PN L+ V+F ++ VA++G NG GKST +L G L P GE+
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Score = 35.7 bits (83), Expect = 0.024
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA----VIWLDNYLQTWKKTL 58
+K + SGG + RV++A L L P +++ DE T+ LD + + +T KKTL
Sbjct: 137 DKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196
Query: 59 LVVSHD 64
+ ++HD
Sbjct: 197 ISITHD 202
Score = 28.0 bits (63), Expect = 6.9
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 341 LSGGQKARVALA 352
LSGGQK RVA+A
Sbjct: 143 LSGGQKQRVAIA 154
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 45.8 bits (109), Expect = 2e-05
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL----NAVIWLDNYLQTWKKTLLVVSH 63
SGG + RV++ RAL P LLL+DEP LDL + +L+ +L VSH
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Score = 43.5 bits (103), Expect = 1e-04
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
NF L AL GP+G GK++ +N++ G P++G + + R+ D G L P
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL---VDAEKGIFLPP 73
Query: 302 DDTPCEYLM---KLF-------NLPY--EKSRRQ-----LGMFGLPSYAHTIPIRDLSGG 344
+ Y+ +LF NL Y KS R + + G+ P LSGG
Sbjct: 74 EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-LSGG 132
Query: 345 QKARVALA 352
+K RVA+
Sbjct: 133 EKQRVAIG 140
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 46.0 bits (110), Expect = 2e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNK 234
PP+L L ++ + G K L + V+ + V AL+G NG GKST + +L G P+
Sbjct: 5 TPPLLELRGISKSFGGVKAL-DGVSLTV-RPGEVHALLGENGAGKSTLMKILSGVYPPDS 62
Query: 235 GKVLL--EKVNF 244
G++L+ + V F
Sbjct: 63 GEILIDGKPVAF 74
Score = 44.8 bits (107), Expect = 4e-05
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 28/125 (22%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR----LRIGKFDQHSGEHL 299
AL+G NG GKST + +L G P+ GE+ SPR I Q L
Sbjct: 37 HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQEL--SL 94
Query: 300 FPDDTPCEYLMKLFNLP------------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
P+ + E + L P ++R L GL T + DLS Q+
Sbjct: 95 VPNLSVAENIF-LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT-LVGDLSIAQRQ 152
Query: 348 RVALA 352
V +A
Sbjct: 153 MVEIA 157
Score = 37.5 bits (88), Expect = 0.009
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ S R V +ARAL + +L+LDEPT L
Sbjct: 144 GDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177
Score = 35.9 bits (84), Expect = 0.025
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + +V LAR L +P +L+LDEPT +D+ A
Sbjct: 401 TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGA 436
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSHDQ 65
SGG R RVS+A L +P +L+LDEPT+ LD LN V L + + +L + +
Sbjct: 145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPR 204
Query: 66 SFLNNICTDIIHLDMKKLFY 85
S L + I+ L ++ Y
Sbjct: 205 SDLFRLFDRILLLSSGEIVY 224
Score = 37.6 bits (88), Expect = 0.005
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 29/146 (19%)
Query: 232 PNKGKVLLEKVNFGLDMES-RV-ALVGPNGIGKSTFLNLLKGELTPNK---GE--LRKSP 284
NK +L V+ +ES +V A++G +G GK+T L+ + G + G+ P
Sbjct: 16 WNKYARILNDVSL--HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLPYEKSRRQLGM----FGLPSY 332
R + +F + ++ DD L + LP + S L
Sbjct: 74 R-KPDQFQKCVA-YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL 131
Query: 333 AHTIPIRD-----LSGGQKARVALAE 353
A T I +SGG++ RV++A
Sbjct: 132 ALT-RIGGNLVKGISGGERRRVSIAV 156
Score = 28.8 bits (65), Expect = 4.2
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
L+DV+ G+V+ A++G +G GK+T L+ + G
Sbjct: 20 ARILNDVSLHVESGQVM--------------AILGSSGSGKTTLLDAISG 55
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 44.8 bits (106), Expect = 2e-05
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 185 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
V F Y P G V+L+ ++ + V +VG +G GKST L++ P G+VL++ +
Sbjct: 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD 65
Query: 244 FGL-DMESRVALVG 256
L D VG
Sbjct: 66 LALADPAWLRRQVG 79
Score = 40.9 bits (96), Expect = 5e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARAL P +L+ DE T+ LD
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALD 170
Score = 34.0 bits (78), Expect = 0.090
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
G V+L+ ++ + V +VG +G GKST L++ P G +
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 45.5 bits (108), Expect = 2e-05
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVI-WLDNYLQTWKKTL 58
+ SGG + RV++ RAL P LLL+DEP LD ++ +L+ + +
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 59 LVVSHD 64
L VSH
Sbjct: 186 LYVSHS 191
Score = 42.4 bits (100), Expect = 2e-04
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
+F L + A+ G +G GK+T + L+ G P++GE+ + R FD G L
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL---FDSRKGIFLP 71
Query: 301 PDDTPCEYLMK---LF-------NLPYEKSR-----------RQLGMFGLPSYAHTIPIR 339
P+ Y+ + LF NL Y R R + + G+ +P
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-G 130
Query: 340 DLSGGQKARVALA 352
LSGG+K RVA+
Sbjct: 131 RLSGGEKQRVAIG 143
Score = 36.6 bits (85), Expect = 0.017
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+F L + A+ G +G GK+T + L+ G P++G+++L
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.0 bits (106), Expect = 2e-05
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
+++ + FSGG + R+ +ARAL + P ++LLDEPT+ LD + ++ L K T ++
Sbjct: 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIM 201
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
V+H+ I L L ++M++ +K++T +Y
Sbjct: 202 VTHNLQQAGRISDQTAFLMNGDLIEAGPT----EEMFIAPKKQITSDY 245
Score = 31.5 bits (71), Expect = 0.58
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
++ DV Y G L ++ + + AL+GP+G GKSTFL L
Sbjct: 4 IISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
Score = 30.4 bits (68), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
L ++ + + AL+GP+G GKSTFL L
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 44.6 bits (106), Expect = 2e-05
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRLRIGKFDQHSGEHLFPDDTP 305
L+GPNG GK+T + ++ G + P+ GE+ + R RIG + G L+P
Sbjct: 30 GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKV 87
Query: 306 CE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ YL +L L E++RR+ L L YA+ + +LS G + +V
Sbjct: 88 IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFI 140
Score = 39.2 bits (92), Expect = 0.001
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLD--NYLQTWKKTL 58
K +E S G + +V A+ +P LL+LDEP + LD +N + D L KT+
Sbjct: 122 ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 59 LVVSHDQSFLNNICTDIIHL 78
++ +H + +C ++ L
Sbjct: 182 ILSTHQMELVEELCDRVLLL 201
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 44.1 bits (104), Expect = 2e-05
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSH 63
+ SGG RV++A AL T L DEP+ +LD LNA + + KKT LVV H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 64 DQSFLNNICTDIIHL 78
D + L+ + +D IH+
Sbjct: 131 DLAVLDYL-SDRIHV 144
Score = 40.6 bits (95), Expect = 4e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+ +VGPNG GK+T + +L G+L PN + +
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI 61
Score = 38.7 bits (90), Expect = 0.002
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGE 279
+ +VGPNG GK+T + +L G+L PN
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDN 55
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 44.7 bits (106), Expect = 3e-05
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TL 58
++ K +SGG R R+ +AR+L P +L LDEPT LD + Y++ K+ T+
Sbjct: 126 DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 59 LVVSHD 64
L+ +H
Sbjct: 186 LLTTHY 191
Score = 36.2 bits (84), Expect = 0.015
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGEL-------RKSP---RLRIGKFDQHSGEHLFPD 302
L+GPNG GK+T + +L L P G + P R RIG Q + +
Sbjct: 30 GLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS--VDDE 87
Query: 303 DTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T E L +L+ +P + R + L GL A + ++ SGG + R+ +A
Sbjct: 88 LTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIA 143
Score = 33.1 bits (76), Expect = 0.12
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD 247
G + V+F + L+GPNG GK+T + +L L P G+ + G D
Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV----AGHD 63
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 45.8 bits (108), Expect = 3e-05
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK----KTLLVVS 62
K SGG + R+++ARAL EP +LLLDE T+ LD N+ ++ + K KT++ ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 63 H 63
H
Sbjct: 1417 H 1417
Score = 38.1 bits (88), Expect = 0.008
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ SGG + R+S+ARA+ P +L+LDE T+ LD
Sbjct: 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Score = 30.4 bits (68), Expect = 2.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+NF L A VG +G GKST L L++ P +G +++
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444
Score = 29.6 bits (66), Expect = 3.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 184 DVTFGY---PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
DV F Y P + + + F D + A+VG G GKST ++LL
Sbjct: 1170 DVNFRYISRPNVPIY-KDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214
Score = 29.6 bits (66), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
+ + + F D + A+VG G GKST ++LL
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214
Score = 29.2 bits (65), Expect = 4.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
+NF L A VG +G GKST L L++ P +G++
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 45.3 bits (108), Expect = 3e-05
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
SGG + RV++ RAL P LLL+DEP LDL L YL+ + + L VSH
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187
Score = 35.2 bits (82), Expect = 0.039
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
VN L + A+ G +G GK++ +N + G P KG + + R+ FD G L
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVL---FDAEKGICLP 72
Query: 301 PDDTPCEYLM---KLF-------NLPY---EKSRRQ----LGMFGLPSYAHTIPIRDLSG 343
P+ Y+ +LF NL Y + Q + + G+ P LSG
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS-LSG 131
Query: 344 GQKARVAL--AELT 355
G+K RVA+ A LT
Sbjct: 132 GEKQRVAIGRALLT 145
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 44.7 bits (105), Expect = 3e-05
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
+ SGG + R+++ARAL L+P +LL+DEPT+ +D+ ++ + K +++VSH+
Sbjct: 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
+ + + F Y G + +++ + ELT++Y
Sbjct: 213 QQVARVADYVA-------FLYNGELVEWGSSNEIFTSPKNELTEKY 251
Score = 28.5 bits (63), Expect = 5.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGL 246
Y K +L+ + + S ++GP+G GKST L +L E+ +K KV + + FG
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 247 DM 248
D+
Sbjct: 79 DI 80
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 44.7 bits (106), Expect = 3e-05
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD 247
G P K L+ VN ++ V L+G G GKST + L G L P GK++++ V+
Sbjct: 15 GTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI--- 71
Query: 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 307
K L+ ++RK ++G Q+ LF + +
Sbjct: 72 ------------TDKKVKLS-----------DIRK----KVGLVFQYPEYQLFEETIEKD 104
Query: 308 YLMKLFNLP------YEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALA 352
NL + +R + + GL Y P +LSGGQK RVA+A
Sbjct: 105 IAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF-ELSGGQKRRVAIA 156
Score = 44.3 bits (105), Expect = 4e-05
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 12/71 (16%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWL-DNYLQ 52
++KS E SGG + RV++A + +EP +L+LDEPT LD LN + L Y
Sbjct: 137 YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY-- 194
Query: 53 TWKKTLLVVSH 63
T+++VSH
Sbjct: 195 --NMTIILVSH 203
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 45.4 bits (108), Expect = 3e-05
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPN---------KGELRKSPRLR-IGKFDQHSGEHLFP 301
+A++G +G GK+T +N L G + +R I + Q + P
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD-DLFIP 112
Query: 302 DDTPCEYLM-----KLFNLPYEKSRRQ-----LGMFGLPSYAHTI-----PIRDLSGGQK 346
T E+LM ++ +K +R+ L GL A+T ++ LSGG++
Sbjct: 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGER 172
Query: 347 ARVALAELTL 356
R+A A L
Sbjct: 173 KRLAFASELL 182
Score = 38.1 bits (89), Expect = 0.006
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
K SGG R R++ A L +P LL DEPT+ LD
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 44.5 bits (105), Expect = 3e-05
Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +AR L +EP ++L+DEPT+ LD + + ++ +Q KK ++++V+H+
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225
Score = 30.6 bits (69), Expect = 1.0
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 200 NFGLDM-ESRV-ALVGPNGIGKSTFLNLLKG--ELTPN---KGKVLLEKVNFGLD----- 247
N LD+ E+ V A++GP+G GKST++ L EL P+ GK+L N D
Sbjct: 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI-FDKSYSV 100
Query: 248 --MESRVALV--GPNGIGKSTFLNLLKG 271
+ + V +V PN KS + N+ G
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYG 128
Score = 28.3 bits (63), Expect = 6.6
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 243 NFGLDM-ESRV-ALVGPNGIGKSTFLNLLKG--ELTP 275
N LD+ E+ V A++GP+G GKST++ L EL P
Sbjct: 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP 78
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 45.5 bits (108), Expect = 3e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN--AVIWLDNYLQTWKKTLLVVSHDQSF 67
SGG R R+++ARAL P +L+ DE T+ LD A+I + +T+++++H S
Sbjct: 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST 654
Query: 68 LNNICTDIIHLD 79
+ C II L+
Sbjct: 655 VRA-CDRIIVLE 665
Score = 37.8 bits (88), Expect = 0.008
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
++ F Y P +L +N + + +VGP+G GKST LL+ TP G+VL++
Sbjct: 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517
Query: 241 KVNFGL 246
V+ +
Sbjct: 518 GVDLAI 523
Score = 30.1 bits (68), Expect = 2.1
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 15/62 (24%)
Query: 234 KGKVLLEKVNFGLDMESRVAL---------------VGPNGIGKSTFLNLLKGELTPNKG 278
+G + E + F +S L VGP+G GKST LL+ TP G
Sbjct: 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512
Query: 279 EL 280
++
Sbjct: 513 QV 514
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 44.3 bits (105), Expect = 4e-05
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKT-LLVVSHDQ 65
SGG RV LARAL +EP LL+LDE ++LDL VI L LQ T L ++HD
Sbjct: 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212
Query: 66 SFLNNICTDIIHLD 79
+ C ++ +D
Sbjct: 213 RLVERFCQRVMVMD 226
Score = 32.7 bits (75), Expect = 0.21
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
H G + +L V+ L VAL+G +G GKST LL G +P++G V
Sbjct: 15 HGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV 69
Score = 32.4 bits (74), Expect = 0.33
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRLRI 288
+ +L V+ L VAL+G +G GKST LL G +P++G + K R +
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84
Query: 289 GKFD-------QHSGEHLFPDDTPC----EYLMKLFNL-PYEKSRRQLGMF---GL-PSY 332
F Q S + P T E L L +L E+ R M L S
Sbjct: 85 KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSV 144
Query: 333 AHTIPIRDLSGGQKARVALA 352
P LSGGQ RV LA
Sbjct: 145 LDKRP-PQLSGGQLQRVCLA 163
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 44.2 bits (105), Expect = 4e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
P +L L V+ + G K L + ++F +D L+GPNG GK+T ++++ G+ P +G+
Sbjct: 3 PIILYLDGVSVSFGGFKALND-LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61
Query: 237 VLLE 240
VL +
Sbjct: 62 VLFD 65
Score = 35.8 bits (83), Expect = 0.021
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
L+GPNG GK+T ++++ G+ P +GE+ + K +H
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEH 76
Score = 28.5 bits (64), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 26 EPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSFLNNI 71
+P LLLLDEP + L++ ++LVV HD F+ I
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREI 212
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 44.5 bits (105), Expect = 4e-05
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIWLD-NYLQTWKKTLLVVSH 63
SGG + R++LARAL +P LL+LDEPT LD +A +IW L KT+L+ +H
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
Score = 43.0 bits (101), Expect = 1e-04
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSP 284
KV++ ++F + L+GPNG GKST +L G ++P++G++ +
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA 75
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHTI 336
R+ IG Q ++L P+ T E L+ +F + S R+ L L S A
Sbjct: 76 RVAIGVVPQF--DNLDPEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADV- 131
Query: 337 PIRDLSGGQKARVALA 352
+ LSGG K R+ LA
Sbjct: 132 RVALLSGGMKRRLTLA 147
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 44.3 bits (105), Expect = 4e-05
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
++S E SGG + RV+LA L +EP L+ DEPT LD V + KT++
Sbjct: 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTII 219
Query: 60 VVSHD 64
+V+HD
Sbjct: 220 LVTHD 224
Score = 43.5 bits (103), Expect = 8e-05
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 22/167 (13%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV--LLEKVNFGLDMESRVA 253
L+ V+ ++ +A++G G GK+TF+ L L P+ G + + + + +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT-------PC 306
++ I K+ F + K + E+R+ R+G Q + LF P
Sbjct: 83 VLEKLVIQKTRFKKIKKIK------EIRR----RVGVVFQFAEYQLFEQTIEKDIIFGPV 132
Query: 307 EYLMKLFNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA 352
+ +++ + + + GL SY P +LSGGQK RVALA
Sbjct: 133 SMGVSK-EEAKKRAAKYIELVGLDESYLQRSPF-ELSGGQKRRVALA 177
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 44.0 bits (104), Expect = 5e-05
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +ARAL +EP +LL+DEP + LD A ++ + K T+++V+H+
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207
Score = 42.5 bits (100), Expect = 2e-04
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVN 243
+ G L ++ + AL+GP+G GKSTFL L +L P +G++LL+ N
Sbjct: 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74
Query: 244 F------GLDMESRVALV--GPNGIGKSTFLNLLKG 271
+++ RV +V PN KS F N+ G
Sbjct: 75 IYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.9 bits (104), Expect = 5e-05
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
KS SGG + R+ +ARA+ ++P +LL+DEP + LD + + L+ + KK T+++V
Sbjct: 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218
Query: 62 SHD 64
+H+
Sbjct: 219 THN 221
Score = 31.2 bits (71), Expect = 0.73
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 201 FGLDMESR----VALVGPNGIGKSTFLNLL-----KGELTPNKGKVLLEKVNFGLD---- 247
G+DM+ AL+GP+G GKST+L L ++ G++L ++
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96
Query: 248 --MESRVALV--GPNGIGKSTFLNL 268
M + +V PN KS + N+
Sbjct: 97 YEMRKHIGMVFQRPNPFAKSIYENI 121
Score = 30.5 bits (69), Expect = 1.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 244 FGLDMESR----VALVGPNGIGKSTFLNLL 269
G+DM+ AL+GP+G GKST+L L
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 44.0 bits (104), Expect = 5e-05
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 39/177 (22%)
Query: 184 DVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP---NKGKVLL 239
V+F YP K L ++F + S AL+G NG GKST L+ G L P K+ +
Sbjct: 10 HVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV 69
Query: 240 EKVNFG----LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
+ + D+ +V +V N + F+ G+ E R PR + K
Sbjct: 70 DGITLTAKTVWDIREKVGIVFQN--PDNQFVGATVGDDVAFGLENRAVPRPEMIKI---- 123
Query: 296 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
R L G+ Y + P +LSGGQK RVA+A
Sbjct: 124 ------------------------VRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIA 155
Score = 38.2 bits (89), Expect = 0.004
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVS--HD 64
SGG + RV++A L +EP +++LDE T+ LD ++ L L+ K L V+S HD
Sbjct: 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK-KNNLTVISITHD 203
Query: 65 QSFLN--NICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
++ N+ ++ LD KL +F K+ + K L + K ++K +G
Sbjct: 204 ---IDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGL--DIPFVYKLKNKLKEKG 258
Query: 123 MS 124
+S
Sbjct: 259 IS 260
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 43.6 bits (103), Expect = 6e-05
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 19/110 (17%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS-------PRLRIGKFDQHSGEHLFPDDT 304
+ ++GPNGIGK+TF+ +L G L P++G++ P+ ++ + L
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS---- 83
Query: 305 PCEYLMKLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ PY K+ + L + + +P +LSGG+ RVA+A
Sbjct: 84 --SITKDFYTHPYFKTEIAKPLQIEQI--LDREVP--ELSGGELQRVAIA 127
Score = 43.2 bits (102), Expect = 7e-05
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+ ++GPNGIGK+TF+ +L G L P++G + +E
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE 59
Score = 41.6 bits (98), Expect = 3e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
++ E SGG RV++A L + + LLDEP+ +LD L A + + + +KT
Sbjct: 110 DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169
Query: 59 LVVSHD 64
VV HD
Sbjct: 170 FVVEHD 175
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 43.6 bits (103), Expect = 6e-05
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ K SGG RVS+AR L P +LLLDEPT+ LD
Sbjct: 127 RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163
Score = 39.0 bits (91), Expect = 0.002
Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+V++ GK +L+ ++ + + +VGP+G GKST + L+ + P +G +L++
Sbjct: 6 FKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64
Query: 242 VNFG----LDMESRVALV 255
V+ +D+ ++ +V
Sbjct: 65 VDIKTIDVIDLRRKIGMV 82
Score = 35.9 bits (83), Expect = 0.016
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG---------------E 279
GK +L+ ++ + + +VGP+G GKST + L+ + P +G +
Sbjct: 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID 74
Query: 280 LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS---RRQLGMFGLPSYAHTI 336
LR+ +IG Q HLF + T + + L EK+ L + GL T
Sbjct: 75 LRR----KIGMVFQQP--HLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR 127
Query: 337 PIRDLSGGQKARVALA 352
+++LSGG+ RV++A
Sbjct: 128 DVKNLSGGEAQRVSIA 143
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 43.8 bits (104), Expect = 6e-05
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 16/62 (25%)
Query: 178 PVLGLHDVTFG-YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
P G DV+F YPG +VL +VG +G GK+T LN L L P+ G+
Sbjct: 18 PRKGCRDVSFDLYPG-EVL--------------GIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 237 VL 238
V
Sbjct: 63 VH 64
Score = 40.7 bits (96), Expect = 5e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
FSGG + R+ +AR L P L+ +DEPT LD
Sbjct: 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
Score = 38.4 bits (90), Expect = 0.003
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
V+F L + +VG +G GK+T LN L L P+ GE+
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 43.9 bits (104), Expect = 6e-05
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 184 DVTF--GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
TF G P K L ++ + V ++G NG GKST LN + G+L P G++L++
Sbjct: 8 TKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG 67
Query: 242 VN 243
V+
Sbjct: 68 VD 69
Score = 41.5 bits (98), Expect = 3e-04
Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 31/164 (18%)
Query: 223 LNLLKGELTPNKG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
++L T KG K L ++ + V ++G NG GKST LN + G+L P G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 279 EL--------RKSPR---LRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSR 321
++ +KS + + Q P+ T E L K L +
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 322 RQLGMF---------GLPSYAHTIPIRDLSGGQKARVALAELTL 356
R+ F GL + I LSGGQ+ ++L TL
Sbjct: 122 RRRSSFRERLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATL 164
Score = 35.4 bits (82), Expect = 0.027
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R +SL A P +LLLDE T LD
Sbjct: 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 43.7 bits (104), Expect = 6e-05
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 182 LHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+V+F YP +L ++ + VALVG +G GKST ++LL+ P G++L
Sbjct: 3 FKNVSFRYPSRPDVPILKG-LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61
Query: 239 LEKVN 243
L+ V+
Sbjct: 62 LDGVD 66
Score = 42.5 bits (101), Expect = 1e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+++ARAL P +LLLDE T+ LD
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALD 171
Score = 34.8 bits (81), Expect = 0.041
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 252 VALVGPNGIGKSTFLNLL 269
VALVG +G GKST ++LL
Sbjct: 32 VALVGSSGCGKSTVVSLL 49
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 44.5 bits (105), Expect = 6e-05
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHDQS 66
SGG R RVS+A + + P+LL+LDEPT+ LD A L L + KT++ H S
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267
Score = 43.3 bits (102), Expect = 1e-04
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 252 VALVGPNGIGKSTFLNLLKGELT---------PNKGELRKSPRLRIGKFDQHSGEHLFPD 302
+A++GP+G GKST LN L G + N + K R G Q + L+P
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD--DILYPH 154
Query: 303 DTPCEYLM--KLFNLPYEKSRRQ--------LGMFGLPSYAHTIP----IRDLSGGQKAR 348
T E L+ L LP ++++ + GL +TI IR +SGG++ R
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 349 VALA 352
V++A
Sbjct: 215 VSIA 218
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 43.7 bits (103), Expect = 6e-05
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
+ +L + ++ + Y G L+ +N + A++G NG GKST L G L P+
Sbjct: 1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 235 GKVL 238
G++L
Sbjct: 61 GRIL 64
Score = 38.7 bits (90), Expect = 0.003
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---- 56
+++K T S G + RV++A L +EP +L+LDEPT LD V + L +K
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 57 TLLVVSHDQSFLNNICTDIIHLD 79
T+++ +HD + C ++ +
Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMK 216
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 44.5 bits (105), Expect = 7e-05
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 39/158 (24%)
Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273
PNG F + +TP +L+ ++F L+ +A+ G G GKS+ L ++ GEL
Sbjct: 423 PNG-DDGLFFSNFSLYVTP-----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL 476
Query: 274 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQ--L 324
P++G+++ HSG F T ++M +F L Y++ R +
Sbjct: 477 EPSEGKIK------------HSGRISFSPQTS--WIMPGTIKDNIIFGLSYDEYRYTSVI 522
Query: 325 GMFGLPSYAHTIPIRD----------LSGGQKARVALA 352
L P +D LSGGQ+AR++LA
Sbjct: 523 KACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560
Score = 41.8 bits (98), Expect = 5e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
SGG R R+SLARA++ + L LLD P HLD+
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
Score = 36.8 bits (85), Expect = 0.021
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+L+ ++F L+ +A+ G G GKS+ L ++ GEL P++GK+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483
Score = 33.0 bits (75), Expect = 0.30
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
S G + + LAR++ + +LLLDEP+ HLD LQ +KTL QSF
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-------LQIIRKTL-----KQSFS 1401
Query: 69 NNICTDII 76
N CT I+
Sbjct: 1402 N--CTVIL 1407
Score = 31.8 bits (72), Expect = 0.59
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
+ +T Y G+ +L+ ++F ++ RV L+G G GKST L+ L
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Score = 30.6 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
G+ +L+ ++F ++ RV L+G G GKST L+ L
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 43.5 bits (102), Expect = 7e-05
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQS 66
SGG + R+ +ARAL +P +LL DEPT+ LD A ++ + K T+L+V+H+
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221
Query: 67 FLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
+ ++ M +L + T+F ++ + + T++Y
Sbjct: 222 QAARVSDYTAYMYMGELIEFGATDTIF----IKPKNKQTEDY 259
Score = 39.2 bits (91), Expect = 0.002
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL------------NLLKGE--LTPNK 234
Y GG L+ +N + + AL+GP+G GKSTFL N +GE L P+
Sbjct: 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84
Query: 235 GKVLLEKVNFGLDMESRVALV--GPNGIGKSTFLNLLKG 271
+L +V+ +++ R+++V PN KS F N+ G
Sbjct: 85 VNILSPEVD-PIEVRMRISMVFQKPNPFPKSIFENVAYG 122
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 44.1 bits (105), Expect = 7e-05
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
P L + +PG K L + ++F AL+G NG GKST L +L G P+ G
Sbjct: 2 SPYLSFDGIGKTFPGVKAL-DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 237 VLL--EKVNFGLDMESRVA----------LVGPNGIGKSTFLNLLKGELTPNKG------ 278
+L+ +++ F + A LV P + NL G+L P+KG
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIYQELHLV-PE---MTVAENLYLGQL-PHKGGIVNRR 115
Query: 279 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
L R ++ +H G + P DTP +YL
Sbjct: 116 LLNYEAREQL----EHLGVDIDP-DTPLKYL 141
Score = 41.1 bits (97), Expect = 8e-04
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 23/121 (19%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSG------E-HLFPD 302
AL+G NG GKST L +L G P+ G + + R +G E HL P+
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93
Query: 303 DTPCEYLMKLFNLP-----------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
T E L L LP ++R QL G+ T P++ LS GQ+ V +
Sbjct: 94 MTVAENLY-LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEI 151
Query: 352 A 352
A
Sbjct: 152 A 152
Score = 28.7 bits (65), Expect = 4.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + + L R L + ++LLDEPT +D+ A
Sbjct: 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.4 bits (102), Expect = 8e-05
Identities = 28/108 (25%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
+KS + SGG + R+ +AR + ++P ++L+DEPT+ LD + + +++ + KK T+++
Sbjct: 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI 201
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
V+H+ + + M L F +K++++ +K+ T++Y
Sbjct: 202 VTHNMQQASRVSDYTAFFLMGDLI----EFNKTEKIFLEPQKKETEDY 245
Score = 36.1 bits (83), Expect = 0.020
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVNFG 245
G K L +N + AL+GP+G GKSTFL L +L N +G+VLL+ N
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 246 ------LDMESRVALV--GPNGIGKSTFLNLLKG 271
+++ RV +V PN S + N+ G
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG 108
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 43.2 bits (102), Expect = 8e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKTLLVVSHDQ 65
FSGG + RV++AR ++ +LLLDEPT LD V+ L + L+ + HD+
Sbjct: 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE 212
Query: 66 SFLNNICTDIIHLDMK 81
+ + LD+
Sbjct: 213 EVREAVADRL--LDVS 226
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 191 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
GG L L V+ ++ V L GP+G GKST L L P++G++L+ +D+
Sbjct: 20 GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79
Score = 34.7 bits (80), Expect = 0.048
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 216 GIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275
+ K+ L+ G P +L V+ ++ V L GP+G GKST L L P
Sbjct: 9 NVSKTFTLHQQGGVRLP-----VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
Query: 276 NKGELR 281
++G++
Sbjct: 64 DEGQIL 69
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 42.9 bits (102), Expect = 9e-05
Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 48/141 (34%)
Query: 245 GLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR----I 288
G+ +E ++G NG+GK+T L L G L G + + P R I
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77
Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR--------- 339
Q G +FP T E NL G+ LP + IP
Sbjct: 78 AYVPQ--GREIFPRLTVEE------NL-------LTGLAALPRRSRKIPDEIYELFPVLK 122
Query: 340 --------DLSGGQKARVALA 352
DLSGGQ+ ++A+A
Sbjct: 123 EMLGRRGGDLSGGQQQQLAIA 143
Score = 41.4 bits (98), Expect = 3e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPT 36
SGG + ++++ARAL P LLLLDEPT
Sbjct: 133 SGGQQQQLAIARALVTRPKLLLLDEPT 159
Score = 41.0 bits (97), Expect = 4e-04
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKG 235
L + ++ Y +L G+ +E ++G NG+GK+T L L G L G
Sbjct: 1 LEVSNLNVYYGQSHIL-----RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55
Query: 236 KVLLEKVNF-GLDMESRVALVGPNGIG 261
+ L+ + L R GI
Sbjct: 56 SIRLDGEDITKLPPHERAR----AGIA 78
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.1 bits (101), Expect = 1e-04
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
KS SGG + R+ +ARAL ++P +LL+DEP + LD A + ++ + + + T+ +
Sbjct: 145 NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204
Query: 61 VSHD 64
V+H+
Sbjct: 205 VTHN 208
Score = 36.2 bits (83), Expect = 0.019
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
P + + D++F Y K + E ++ + A++GP+G GKSTF+ L
Sbjct: 6 PAIKVKDLSFYYNTSKAI-EGISMDIYRNKVTAIIGPSGCGKSTFIKTL 53
Score = 30.4 bits (68), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
+E ++ + A++GP+G GKSTF+ L
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL 53
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.1 bits (101), Expect = 1e-04
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
KS SGG + R+ +AR L +EP ++L+DEP + LD + + ++ +Q K+ T+ +V
Sbjct: 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIV 202
Query: 62 SHD 64
+H+
Sbjct: 203 THN 205
Score = 33.5 bits (76), Expect = 0.11
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLK--GELTPN 233
P + + V F Y +VL N +D R A++GP+G GKST L L ++
Sbjct: 3 PKIKIRGVNFFYHKHQVL---KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 234 ---KGKVLLEKVNFG------LDMESRVALV--GPNGIGKSTFLNLLKG 271
+G VLL+ N +++ RV +V PN KS F N+ G
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ +VGP G GK+T L EL P G V+
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIY 35
Score = 38.1 bits (88), Expect = 0.002
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKG 278
+ +VGP G GK+T L EL P G
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGG 31
Score = 32.3 bits (73), Expect = 0.16
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 14 RIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL--NNI 71
R+R++LA A L+P +L+LDE T+ LD L + LL + + + N
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 72 CTDIIHLDMK 81
D+ ++
Sbjct: 126 EKDLGPALLR 135
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 42.5 bits (100), Expect = 1e-04
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
SGG + R+ +AR + +EP ++L+DEPT+ LD A ++ ++ KK T+++V+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
Score = 29.8 bits (67), Expect = 1.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 223 LNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
L+L GE N+ L+ +N + AL+GP+G GKST L L
Sbjct: 9 LDLFYGE---NQA---LKSINLPIPARQVTALIGPSGCGKSTLLRCL 49
Score = 29.0 bits (65), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
L+ +N + AL+GP+G GKST L L
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCL 49
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 43.6 bits (103), Expect = 1e-04
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
DV++ Y G +L ++ + M S+ +VG +G GKST LL G G++LL
Sbjct: 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Score = 43.2 bits (102), Expect = 2e-04
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKKTLLVVSH 63
SGG + R++LARAL + +L+LDE T++LD + ++N L KT++ V+H
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667
Score = 41.3 bits (97), Expect = 6e-04
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 218 GKSTFLNLLKGELTPNK-------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270
K T LN L G++ N G +L ++ + M S+ +VG +G GKST LL
Sbjct: 462 KKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
Query: 271 GELTPNKGELRKSPRLRIGKFDQH 294
G GE+ + + D+H
Sbjct: 522 GFFQARSGEILLNGFS-LKDIDRH 544
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 42.4 bits (100), Expect = 1e-04
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLV 60
K K+FS G + R+ +A AL P LL+LDEPTN LD + L ++++ + T+++
Sbjct: 120 KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179
Query: 61 VSH 63
SH
Sbjct: 180 SSH 182
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
G + + ++ + S L+GPNG GKST L ++ G L P G+++ +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60
Score = 38.9 bits (91), Expect = 0.002
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
+ + ++ + S L+GPNG GKST L ++ G L P GE+
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.6 bits (100), Expect = 1e-04
Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
+KS SGG + R+ +AR + + P ++L+DEP + LD + +++ + K+ T+++
Sbjct: 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200
Query: 61 VSHD 64
V+H+
Sbjct: 201 VTHN 204
Score = 38.0 bits (88), Expect = 0.004
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP---NKGKVLLEKVNFG---- 245
+L+ VN + S AL+GP+G GKSTF+ L +L P ++G + L+ V+
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 246 --LDMESRVALV--GPNGIGKSTFLNLLKG 271
+++ +V +V PN KS F N+ G
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L +V++ Y G + F +++ S A +G G GKST + LL G P +G V
Sbjct: 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64
Query: 238 LLEKV 242
++
Sbjct: 65 RVDDT 69
Score = 41.7 bits (98), Expect = 3e-04
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------- 281
TP +G+ L + VN ++ S A +G G GKST + LL G P +G +R
Sbjct: 16 TPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITST 74
Query: 282 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEK----SRRQLGMFG 328
K R ++G Q LF ++T + + + F + E+ +R +L + G
Sbjct: 75 SKNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVG 133
Query: 329 LPSYAHTIPIRDLSGGQKARVALA 352
+ +LSGGQ RVA+A
Sbjct: 134 ISESLFEKNPFELSGGQMRRVAIA 157
Score = 40.5 bits (95), Expect = 7e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
EK+ E SGG RV++A L +EP +L+LDEPT LD
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.1 bits (99), Expect = 2e-04
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQS 66
SGG R R+ +ARAL ++P +LL+DEPT ++D ++ L KK T+++V+H +
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA 209
Query: 67 FLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
+ + L + KL +K++ ELT++Y
Sbjct: 210 QAARVSDYVAFLYLGKLIEVGPT----RKVFENPEHELTEKY 247
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 178 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
++ + ++F YP L+ V+F + VA+VG NG GKST LL G L P G
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 237 V 237
+
Sbjct: 64 I 64
Score = 35.8 bits (83), Expect = 0.022
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
P+ L+ V+F + VA+VG NG GKST LL G L P G +
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Score = 35.8 bits (83), Expect = 0.027
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 1 MQEKSTKE---FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
M++ +E SGG + RV++A L L+P +++LDE T+ LD
Sbjct: 130 MEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
Score = 33.1 bits (76), Expect = 0.19
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
RQ+GM + + P R LSGGQK RVA+A
Sbjct: 126 RQVGM---EDFLNREPHR-LSGGQKQRVAIA 152
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI 45
SGG R RV +ARAL P +LLDEP +D AVI
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176
Score = 41.4 bits (98), Expect = 3e-04
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 49/174 (28%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF-GLDME 249
+ ++ V+ ++ V L+GPNG GK+T ++ G + P+ GK+LL+ + L M
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 250 SRVALVGPNGIG-----KSTFLNL-----LKGELTPNKGELR-KSPRLRIGKFDQHSGEH 298
R L GIG S F L + L E+R K + K
Sbjct: 75 KRARL----GIGYLPQEASIFRKLTVEDNIMAVL-----EIREKDLKKAERK-------- 117
Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ L++ F++ R LSGG++ RV +A
Sbjct: 118 -----EELDALLEEFHI--THLRDSKAYS-------------LSGGERRRVEIA 151
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 42.2 bits (99), Expect = 2e-04
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 33/134 (24%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-------- 289
+L+ +N ++ +A+ G G GK++ L L+ GEL P++G+++ S R+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 290 -----------KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338
+D++ + + C+ + P EK LG G+
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVV---KACQLEEDITKFP-EKDNTVLGEGGI--------- 158
Query: 339 RDLSGGQKARVALA 352
LSGGQ+AR++LA
Sbjct: 159 -TLSGGQRARISLA 171
Score = 40.6 bits (95), Expect = 6e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
SGG R R+SLARA++ + L LLD P +LD+
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 41.8 bits (99), Expect = 2e-04
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEP 35
SGG R RV +ARAL P LLLDEP
Sbjct: 135 SGGERRRVEIARALATNPKFLLLDEP 160
Score = 39.8 bits (94), Expect = 0.001
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 49/173 (28%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF-GLDME 249
G + ++ V+ + V L+GPNG GK+T ++ G + P+ GK+LL+ + L M
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 250 SRVALVGPNGIG-----KSTFLNL-----LKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
R L GIG S F L + L E+R + +
Sbjct: 71 KRARL----GIGYLPQEASIFRKLTVEENILAVL-----EIRGLSKKEREE--------- 112
Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E L++ F++ R+ LSGG++ RV +A
Sbjct: 113 -----KLEELLEEFHI--THLRKSKASS-------------LSGGERRRVEIA 145
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 42.9 bits (101), Expect = 2e-04
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
EFSGG R R+ +ARAL L P +++ DE + LD++ + N L ++ L +SH
Sbjct: 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522
Query: 64 DQSFLNNI 71
D + + I
Sbjct: 523 DMAVVERI 530
Score = 37.9 bits (88), Expect = 0.007
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
+ SGG R RV +A AL P +L+ DEPT LD+
Sbjct: 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDV 201
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 41.8 bits (99), Expect = 2e-04
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P+L L ++ + G K L ++ +D ++GPNG GK+T ++++ G+ P++G V
Sbjct: 1 PILYLEGLSVSFDGFKAL-NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV 59
Query: 238 LL 239
L
Sbjct: 60 LF 61
Score = 36.0 bits (84), Expect = 0.020
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKG-------ELRKSP-----RLRIG-KF 291
++GPNG GK+T ++++ G+ P++G +L P R IG KF
Sbjct: 32 VIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF 83
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 41.9 bits (98), Expect = 2e-04
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---- 56
+ ++S SGG R R +A L E ++LLDEPT LD++ I L L +
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195
Query: 57 TLLVVSHDQSFLNNICTDIIHL 78
TL V HD LN C HL
Sbjct: 196 TLAAVLHD---LNQACRYASHL 214
Score = 41.1 bits (96), Expect = 5e-04
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 185 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+T GY G + E + + A++GPNG GKST L L +TP G V L+
Sbjct: 13 LTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67
Score = 35.3 bits (81), Expect = 0.034
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 35/155 (22%)
Query: 226 LKGE-LTPNKGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--- 280
L+GE LT GK + E + + A++GPNG GKST L L +TP G +
Sbjct: 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67
Query: 281 --------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE-------------- 318
K RIG Q++ P D + L+ P++
Sbjct: 68 GEHIQHYASKEVARRIGLLAQNATT---PGDITVQELVARGRYPHQPLFTRWRKEDEEAV 124
Query: 319 -KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
K+ + G+ L + + LSGGQ+ R +A
Sbjct: 125 TKAMQATGITHLADQS----VDTLSGGQRQRAWIA 155
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
P+L + ++ Y G V+F L + +VG +G GK+T L + G LTP+ G
Sbjct: 3 DKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 236 KV 237
V
Sbjct: 62 TV 63
Score = 40.1 bits (94), Expect = 0.001
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
FSGG + R+ +AR L P L+ +DEPT LD+
Sbjct: 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184
Score = 33.6 bits (77), Expect = 0.13
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+F L + +VG +G GK+T L + G LTP+ G +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 41.7 bits (98), Expect = 3e-04
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGE----------LRKS----PRLRIGKFDQHSGEH 298
A++GP+GIGK+T L L+ G++ P+ GE + +S R R+ Q SG
Sbjct: 37 AIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQ-SGA- 94
Query: 299 LFPDDTPCEY----LMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRDLSGGQKARVA 350
LF D + L + LP + M GL A +P +LSGG R A
Sbjct: 95 LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP-SELSGGMARRAA 153
Query: 351 LA 352
LA
Sbjct: 154 LA 155
Score = 40.9 bits (96), Expect = 5e-04
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+++ P GK+ A++GP+GIGK+T L L+ G++ P+ G++L + N
Sbjct: 25 NISLTVPRGKI--------------TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70
Score = 39.0 bits (91), Expect = 0.002
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEP---TNHLDLNAVIWL-DNYLQTWKKTLLVVSH 63
E SGG R +LARA+ LEP L++ DEP + + + ++ L T +VVSH
Sbjct: 143 ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202
Query: 64 D 64
D
Sbjct: 203 D 203
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 41.9 bits (98), Expect = 3e-04
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +ARA+ EP +LLLDEP + LD A ++ + KK T+ +V+H+
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 41.9 bits (99), Expect = 3e-04
Identities = 45/149 (30%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------- 281
TP + + L + VN + S VA++G G GKST L L G L P G +
Sbjct: 16 TPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAG 74
Query: 282 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYE----KSRRQL 324
K R ++G Q LF E + K F + E K+R +
Sbjct: 75 KKNKKLKPLRKKVGIVFQFPEHQLFE-----ETVEKDICFGPMNFGVSEEDAKQKAREMI 129
Query: 325 GMFGLP-SYAHTIPIRDLSGGQKARVALA 352
+ GLP P +LSGGQ RVA+A
Sbjct: 130 ELVGLPEELLARSPF-ELSGGQMRRVAIA 157
Score = 39.6 bits (93), Expect = 0.001
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+S E SGG RV++A L +EP +L+LDEPT LD
Sbjct: 140 ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 42.0 bits (99), Expect = 3e-04
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 241 KVNFGLDMESR----VALVGPNGIGKST----FLNLLK---GELTPNKGELRKSPRLRIG 289
K + E L+GPNG GK+T L LL+ GE+T N G L + + RIG
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75
Query: 290 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRDLS 342
+ G L+P T + YL +L +P + +++L + I++LS
Sbjct: 76 YLPEERG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELS 132
Query: 343 GGQKARVAL 351
G + ++
Sbjct: 133 KGNQQKIQF 141
Score = 32.7 bits (75), Expect = 0.24
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY---LQTWKKTLLV 60
K KE S G + ++ A+ EP LL+LDEP + LD V L + L+ T++
Sbjct: 126 KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKR----KELTKEYELQE---- 112
SH + +C ++ L + Y G ++ + +KR +L+ E EL
Sbjct: 186 SSHRMEHVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLVIESDLSLE-ELANIPGI 243
Query: 113 KQIREMKSQGMSKEKAERQHSHKALKEQARKR-VQKDDDDEP 153
+I E K + + + +E AR +Q+ + EP
Sbjct: 244 LKITETKDGSWRIQIENETVAREIFQEVARDGYIQRFELQEP 285
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 41.6 bits (97), Expect = 3e-04
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
EKS E SGG RV++A L +EP +L+LDEPT LD A I + ++ +T++
Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVV 198
Query: 60 VVSH 63
+V+H
Sbjct: 199 LVTH 202
Score = 38.6 bits (89), Expect = 0.003
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 25/134 (18%)
Query: 244 FGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------------KSP 284
F +D+E S AL+G G GKST L L G L P +G++ K
Sbjct: 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV 82
Query: 285 RLRIGKFDQHSGEHLFPDDT--PCEYLMKLFNLPYEKSRR----QLGMFGLPSYAHTIPI 338
R ++G Q LF + + + F +P EK+ + +L M GL
Sbjct: 83 RKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP 142
Query: 339 RDLSGGQKARVALA 352
+LSGGQ RVA+A
Sbjct: 143 FELSGGQMRRVAIA 156
Score = 33.6 bits (76), Expect = 0.11
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNK 234
++ V + Y + F +D+E S AL+G G GKST L L G L P +
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 235 GKV 237
GKV
Sbjct: 61 GKV 63
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 41.7 bits (98), Expect = 3e-04
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------------KS 283
L+ ++F L+ S VALVG G GKST + L P+ G + K
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTI 336
R ++ Q LF ++T + + K F ++++ + L GL +
Sbjct: 83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141
Query: 337 PIRDLSGGQKARVALA 352
+LSGGQ RVA+A
Sbjct: 142 SPFELSGGQMRRVAIA 157
Score = 38.3 bits (89), Expect = 0.003
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---T 57
+ KS E SGG RV++A + EP +L LDEP LD + + ++K T
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197
Query: 58 LLVVSHDQSFLNNICTDIIHLDMKKL 83
+++V+H+ + D++ L+ KL
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 41.4 bits (97), Expect = 3e-04
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
SGG + R+ +AR L + P ++L+DEP + LD A +++ ++ KK T+++V+H+
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQ 210
Query: 68 LNNICTDIIHLDMKKLFYYKGNFTLFKK---MYVQKRKELTKEY 108
+ +D F Y G F K ++ +ELT+ Y
Sbjct: 211 AARV-SDYTG------FMYLGKLIEFDKTTQIFENPHEELTENY 247
Score = 32.1 bits (73), Expect = 0.36
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 14/42 (33%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
L+D+T P +V AL+GP+G GKST L
Sbjct: 22 LYDITISIPKNRV--------------TALIGPSGCGKSTLL 49
Score = 32.1 bits (73), Expect = 0.36
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 223 LNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 266
LNL GE K L + + AL+GP+G GKST L
Sbjct: 12 LNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLL 49
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 41.2 bits (96), Expect = 3e-04
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN-----YLQTWKKTLLVVSH 63
SGG R R+ +ARAL+ ++ LD+P + LD++ L +LQ K+TL++V+H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 64 DQSFL 68
+L
Sbjct: 201 KLQYL 205
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.3 bits (97), Expect = 3e-04
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
SGG + RV +AR L P ++LLDEPT+ LD + ++ L K T+L+V+
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ 209
Query: 68 LNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
+ I + F+ G+ + K+M++ + + T++Y
Sbjct: 210 ASRISD-------RTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246
Score = 35.5 bits (82), Expect = 0.026
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN 233
P+L + D++ Y K L V+ AL+GP+G GKST L + +L P
Sbjct: 4 PILQVSDLSV-YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Score = 32.1 bits (73), Expect = 0.39
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN 276
NK K L V+ AL+GP+G GKST L + +L P
Sbjct: 16 NKKKAL-NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 41.5 bits (97), Expect = 4e-04
Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPR----L 286
+L+ +N + LVG NG GKST L G L P KG L S R L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 287 R--IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGLPSYAHTIPI 338
R + Q + +F D + L NL E +RR L + + H PI
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-PI 134
Query: 339 RDLSGGQKARVALA 352
+ LS GQK RVA+A
Sbjct: 135 QCLSHGQKKRVAIA 148
Score = 33.4 bits (76), Expect = 0.13
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
S G + RV++A AL L+ LLLDEPT LD
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 41.4 bits (97), Expect = 4e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSHD 64
FSGG + R+ +AR L P L+ +DEPT LD++ L + L+ + L ++V+HD
Sbjct: 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
Score = 39.8 bits (93), Expect = 0.001
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
P+L + ++ Y GG V+F L + +VG +G GKST L L G L P+ G
Sbjct: 1 KPLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 237 V 237
Sbjct: 60 A 60
Score = 34.4 bits (79), Expect = 0.065
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR 285
V+F L + +VG +G GKST L L G L P+ G R
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 41.4 bits (97), Expect = 4e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSHD 64
SGG + RV++ARAL P +LL DE T+ LD + + L + T+L+++H+
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200
Query: 65 QSFLNNICTDIIHLDMKKL 83
+ IC + + +L
Sbjct: 201 MDVVKRICDCVAVISNGEL 219
Score = 33.3 bits (76), Expect = 0.16
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 47/176 (26%)
Query: 189 YPGGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGKVLLEKVN 243
+ G K + L V+ + ++G +G GKST + NLL+ P G V+++
Sbjct: 12 HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTSGSVIVD--- 65
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
G D+ + L ELT R +IG QH +L
Sbjct: 66 -GQDLTT-----------------LSNSELT--------KARRQIGMIFQHF--NLLSSR 97
Query: 304 TPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + ++L N P ++ +R+ L + GL + P +LSGGQK RVA+A
Sbjct: 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVAIA 152
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 41.1 bits (97), Expect = 4e-04
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 17/79 (21%)
Query: 3 EKSTKEFSGG-WRIRVSLARALFLE--PT------LLLLDEPTNHLDLNAVIWLDNYLQT 53
+S + SGG W+ RV LA A+ L+ P LLLLDEP N LD+ LD L
Sbjct: 121 GRSVNQLSGGEWQ-RVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
Query: 54 WKK---TLLVVSHDQSFLN 69
+ +++ SHD LN
Sbjct: 179 LCQQGIAVVMSSHD---LN 194
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ LVGPNG GKST L + G L P G +
Sbjct: 25 LHLVGPNGAGKSTLLARMAG-LLPGSGSIQF 54
Score = 36.4 bits (85), Expect = 0.013
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
+ LVGPNG GKST L + G L P G ++
Sbjct: 25 LHLVGPNGAGKSTLLARMAG-LLPGSGSIQ 53
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 41.0 bits (96), Expect = 4e-04
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHD 64
E SGG + RV LARA+ + ++LLDEP +D+ +I L L+ KT+LV +H+
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 65 QSFLNNIC 72
+ C
Sbjct: 202 LGSVTEFC 209
Score = 34.9 bits (80), Expect = 0.046
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L D +F PGG + ALVG NG GKST L G + GK+
Sbjct: 23 LRDASFTVPGGSI--------------AALVGVNGSGKSTLFKALMGFVRLASGKI 64
Score = 34.5 bits (79), Expect = 0.063
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 230 LTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKST-------FLNLLKGELTPNKGELRK 282
+T G L +F + S ALVG NG GKST F+ L G+++ R+
Sbjct: 14 VTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ 73
Query: 283 SPRLRIGKFDQHSGE--HLFP---DDTPC--EY-LMKLFNLPYEKSRR----QLGMFGLP 330
+ + + + S E FP +D Y M ++ R+ L +
Sbjct: 74 ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV 133
Query: 331 SYAHTIPIRDLSGGQKARVALA 352
+ H I +LSGGQK RV LA
Sbjct: 134 EFRHR-QIGELSGGQKKRVFLA 154
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 41.6 bits (98), Expect = 4e-04
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EK 241
+++ +PG K L + VN + S AL+G NG GKST L L G + G +L ++
Sbjct: 3 NISKSFPGVKAL-DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61
Query: 242 VNF 244
++F
Sbjct: 62 IDF 64
Score = 34.3 bits (79), Expect = 0.093
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
L+ VN + S AL+G NG GKST L L G + G +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI 55
Score = 33.5 bits (77), Expect = 0.15
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + +V + R L +P +L+LDEPT +D+ A
Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGA 426
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
PP+L ++ Y G +VL + ++F L AL+G NG GKST + ++ G + P+ G
Sbjct: 8 APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 236 KVLLEKVNF 244
+ +
Sbjct: 67 TLEIGGNPC 75
Score = 37.3 bits (87), Expect = 0.009
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
G +L+ ++F L AL+G NG GKST + ++ G + P+ G L
Sbjct: 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69
Score = 34.6 bits (80), Expect = 0.082
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
E++ + SGG + +V +A+ L P LL++DEPT +D++A
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 40.7 bits (95), Expect = 5e-04
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +ARAL P +LL+DEPT+ LD + ++ + K+ T+++V+H+
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213
Score = 36.4 bits (84), Expect = 0.015
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF---LNL------- 225
V ++ + Y G L+ +N + A++GP+G GKSTF LNL
Sbjct: 9 KQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN 67
Query: 226 --LKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG--IGKSTFLNLLKGEL---TPNKG 278
L GE+ N +L KV+ +++ + +V G +S F N+ G T NK
Sbjct: 68 VKLTGEMNYNGSNILKGKVDL-VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKK 126
Query: 279 ELRK 282
+L++
Sbjct: 127 KLQE 130
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 41.2 bits (97), Expect = 6e-04
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHD 64
+ SGG + RVS+ARAL ++L DEPT LD ++ V+ + + L+ T+++V+HD
Sbjct: 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
Score = 35.5 bits (82), Expect = 0.043
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 178 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
+L L D+ YP G+ +L+ ++ + VA+VG +G GKST +N+L
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL 54
Score = 35.1 bits (81), Expect = 0.062
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 29/125 (23%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS------------PRLRIGKFDQHSG--- 296
VA+VG +G GKST +N+L P G R + +LR +H G
Sbjct: 37 VAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR----REHFGFIF 92
Query: 297 --EHLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
HL T P Y +++ L GL P LSGGQ+
Sbjct: 93 QRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQ 151
Query: 348 RVALA 352
RV++A
Sbjct: 152 RVSIA 156
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 40.4 bits (94), Expect = 7e-04
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +AR L ++P ++L DEPT+ LD + +++ + KK T+++V+H+
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
Score = 35.4 bits (81), Expect = 0.029
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVNF- 244
G K L+ V+ + S AL+GP+G GKSTF+ L +L N +GKV +E +
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 245 -----GLDMESRVALV--GPNGIGKSTFLNLLKG 271
+++ V +V PN S + N+ G
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 40.4 bits (94), Expect = 7e-04
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+ +ARAL ++P LLLLDEPT+ LD
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174
Score = 31.2 bits (70), Expect = 0.61
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 217 IGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 266
I K+T LNL G+ K L +N ++ AL+G +G GKSTFL
Sbjct: 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFL 45
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.3 bits (94), Expect = 8e-04
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
+ SGG + R+ +ARAL +P +LL DEPT +LD +++ KK T+++V+H
Sbjct: 146 KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
I +D + F YKG + ++++ R ELT++Y
Sbjct: 206 QQAARI-SDYV------AFLYKGQIVEWGPTREVFTNPRHELTEKY 244
Score = 29.5 bits (66), Expect = 2.3
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPN---KGKVLLEKVN-F 244
G +L+ VN + + AL+GP+G GKST L + EL P G+V L+ + F
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 245 GLD---MESRVALVG--PNGIGK-STFLNLLKG----ELTPNKGELRKSPR 285
+D + RV +V PN I S F N+ G L +K EL++ R
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVR 124
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 40.2 bits (94), Expect = 8e-04
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ S + SGG + R+ +ARA+ +P ++L+DEP + LD
Sbjct: 175 DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Score = 31.7 bits (72), Expect = 0.57
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 48/162 (29%)
Query: 206 ESRV-ALVGPNGIGKSTFLNLL------------KGELTPNKGKVLLEKVNFGLDMESRV 252
E++V A++GP+G GKSTFL + +GELT V V+ + + R+
Sbjct: 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD-PVALRRRI 122
Query: 253 ALV--GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
+V PN KS + N+ G L+I +D D E +
Sbjct: 123 GMVFQKPNPFPKSIYDNVAYG--------------LKIQGYDGDI-------DERVEESL 161
Query: 311 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ L +++ + QL GL DLSGGQ+ R+ +A
Sbjct: 162 RRAAL-WDEVKDQLDSSGL----------DLSGGQQQRLCIA 192
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 40.0 bits (94), Expect = 8e-04
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKKTLLVVSH 63
+ SGG RV +A AL LEP L+ DEPT LD+ L Q + +L+++H
Sbjct: 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
Query: 64 DQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQK 100
D + I ++ +D ++ +F K +K
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRK 224
Score = 32.0 bits (73), Expect = 0.36
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGELTPNKGKVLLEKVN 243
L++ +N L +ALVG +G GKS L LL LT G++LL+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRP 53
Score = 30.0 bits (68), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGELTPNKGELR 281
L++ +N L +ALVG +G GKS L LL LT GE+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL 48
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 40.4 bits (95), Expect = 9e-04
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+ +ARA+ +EP +LLLDEPT+ LD
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
Score = 32.7 bits (75), Expect = 0.25
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDM---ESRV-ALVGPNGIGKSTFLNLLK--GEL 230
L + ++ Y + L F + M ++RV A +GP+G GKST L +L
Sbjct: 23 QTALEVRNLNLFYGDKQAL-----FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77
Query: 231 TPN---KGKVLLEKVNF---GLDMES---RVALV--GPNGIGKSTFLNLLKG 271
N +G++ L+ N +D+ RV +V PN KS + N++ G
Sbjct: 78 VDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG 129
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 40.9 bits (96), Expect = 9e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR 285
TPN G VL+E ++F + + + + GPNG GKS+ +L GEL P G P
Sbjct: 461 TPN-GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPA 513
Score = 39.3 bits (92), Expect = 0.003
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 190 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
P G VL+E ++F + + + + GPNG GKS+ +L GEL P G L
Sbjct: 462 PNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRL 509
Score = 32.4 bits (74), Expect = 0.38
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQS 66
SGG + R+++AR + +P +LDE T+ + ++ ++ + + TL VSH +S
Sbjct: 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKS 640
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.1 bits (94), Expect = 0.001
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVN 243
+ G K L V+ + ++ A +GP+G GKSTFL L + GK+ L+ +
Sbjct: 28 FYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87
Query: 244 F---GLD---MESRVALV--GPNGIGKSTFLNLLKGE----LTPNKGEL 280
LD + +RV +V PN KS + N+ G L +K EL
Sbjct: 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Score = 35.5 bits (82), Expect = 0.032
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+ +ARA+ + P ++L+DEP + LD
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 40.2 bits (94), Expect = 0.001
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 36/160 (22%)
Query: 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE--KVNFGLDMESRVALVG 256
++F L +A++G NG GKST +L G + P G++L++ ++FG D R +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG-DYSYRSQRIR 90
Query: 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 316
ST LN PR RI + D P L
Sbjct: 91 MIFQDPSTSLN----------------PRQRISQI----------LDFPLRLNTDLEPEQ 124
Query: 317 YEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
EK + RQ+G+ LP +A P L+ GQK R+ LA
Sbjct: 125 REKQIIETLRQVGL--LPDHASYYP-HMLAPGQKQRLGLA 161
Score = 31.3 bits (71), Expect = 0.67
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
+ G + R+ LARAL L P +++ DE LD+
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 39.4 bits (92), Expect = 0.001
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
+ SGG + RV+LARA P +L DEPT +LD + + L + TL++V+H
Sbjct: 146 QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
Query: 64 D 64
D
Sbjct: 206 D 206
Score = 34.4 bits (79), Expect = 0.051
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV-LLEKVNFGLDMESRVALVGPN-GIGKSTFL 266
+AL+G +G GKST L +L G + G+V L+ + +D E+R L + G +F+
Sbjct: 39 IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM 98
Query: 267 NLLKGELTP--NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 324
L P N E + P L G+ + S ++ L
Sbjct: 99 ------LIPTLNALENVELPALLRGESSRQSRNG---------------------AKALL 131
Query: 325 GMFGLPSYAHTIPIRDLSGGQKARVALA 352
GL +P + LSGG++ RVALA
Sbjct: 132 EQLGLGKRLDHLPAQ-LSGGEQQRVALA 158
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
GG + + VN + + V+L+GPNG GK+T N L G P G +LL
Sbjct: 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65
Score = 36.1 bits (84), Expect = 0.017
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
VN + + V+L+GPNG GK+T N L G P G +
Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL 63
Score = 31.9 bits (73), Expect = 0.41
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 16 RVSLARALFLEPTLLLLDEPTNHL------DLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
R+ +AR + +P +L+LDEP L +L+ +I T+L++ HD +
Sbjct: 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI--AELRNEHNVTVLLIEHDMKLVM 218
Query: 70 NI 71
I
Sbjct: 219 GI 220
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/57 (35%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +ARA+ +EP +LL+DEP + LD + + +++ + K+ T+++V+H+
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206
Score = 38.2 bits (89), Expect = 0.004
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLE 240
Y G +E VN ++ S A +GP+G GKST L L E+ P +G+VLL+
Sbjct: 13 YYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69
Score = 32.0 bits (73), Expect = 0.40
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP 275
+E VN ++ S A +GP+G GKST L L E+ P
Sbjct: 20 VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP 58
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 39.5 bits (92), Expect = 0.001
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ SGG + RV +ARA+ +P +LL DEPT +LD
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
Score = 37.5 bits (87), Expect = 0.005
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------RK 282
G+ L+ V F + L G +G GKST L L+ G P+ G++ R+
Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73
Query: 283 SPRLR--IGK-FDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSY 332
P LR IG F H HL D T + + + + + RR+ L GL
Sbjct: 74 VPFLRRQIGMIFQDH---HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK 130
Query: 333 AHTIPIRDLSGGQKARVALA 352
A PI+ LSGG++ RV +A
Sbjct: 131 AKNFPIQ-LSGGEQQRVGIA 149
Score = 36.4 bits (84), Expect = 0.014
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 185 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
V+ Y GG+ L+ V F + L G +G GKST L L+ G P+ GK+
Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 39.6 bits (92), Expect = 0.001
Identities = 18/62 (29%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVS 62
+ E SGG + R+ +AR + ++P ++L+DEP + LD + + ++ ++ K+ T+++V+
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
Query: 63 HD 64
H+
Sbjct: 205 HN 206
Score = 29.6 bits (66), Expect = 2.4
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 18/66 (27%)
Query: 193 KVLLEKVN--FG-------LDME----SRVALVGPNGIGKSTFLNLLK--GELTPN---K 234
KV LE++N FG + M+ S A++GP+G GKST L + +L P+
Sbjct: 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVT 63
Query: 235 GKVLLE 240
GK+LL+
Sbjct: 64 GKILLD 69
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
+ L +++ P G+ LL ++NF + R+ + G +G GK++ L L G
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
+ SGG + R++ AR L +P + LDE T+ LD L L+ T++ V H
Sbjct: 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572
Query: 64 DQSFLNNICTDIIHLD 79
+ L N + + L
Sbjct: 573 -RPTLWNFHSRQLELL 587
Score = 33.8 bits (78), Expect = 0.14
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 221 TFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 271
T NL L G+ LL ++NF + R+ + G +G GK++ L L G
Sbjct: 394 TLENL---SLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 38.8 bits (90), Expect = 0.002
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
+ LL++++F L + L G NG GK+T L L+ G L P KG++L E+ + D+
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDL 69
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 39.5 bits (93), Expect = 0.002
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL-- 58
++ + SGG + RV++ARA+ +P +LLLDE + LD + N L+ ++ L
Sbjct: 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196
Query: 59 --LVVSHDQ 65
+ V+HDQ
Sbjct: 197 TFVFVTHDQ 205
Score = 36.1 bits (84), Expect = 0.022
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
P++ L ++ + GK ++ ++ ++ + L+GP+G GK+T L L+ G TP+ G+
Sbjct: 12 SPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 237 VLLEKVN 243
++L+ +
Sbjct: 71 IMLDGQD 77
Score = 35.3 bits (82), Expect = 0.039
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 23/117 (19%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH-----------LFPD 302
L+GP+G GK+T L L+ G TP+ G + L E+ LFP
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDSGRI----MLDGQDITHVPAENRHVNTVFQSYALFPH 100
Query: 303 DTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T E + +++ P + + L M L +A P LSGGQ+ RVA+A
Sbjct: 101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-HQLSGGQQQRVAIA 156
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 39.3 bits (91), Expect = 0.002
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +AR L +EP ++L+DEPT+ LD + ++ + K+ T+++V+H+
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
Score = 33.1 bits (75), Expect = 0.15
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV 255
L +N + S AL+GP+G GKSTFL L N+ L+E G+ +E V
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTL------NRMNDLVE----GIKIEGNVIYE 72
Query: 256 GPN 258
G N
Sbjct: 73 GKN 75
Score = 32.7 bits (74), Expect = 0.22
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
L +N + S AL+GP+G GKSTFL L
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTL 53
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 39.2 bits (92), Expect = 0.002
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+ +V+ Y G KV+L+ V+ + +++GPNG GKST L+++ L + G++ ++
Sbjct: 4 IENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID- 61
Query: 242 VNFGLDMES 250
GL++ S
Sbjct: 62 ---GLELTS 67
Score = 36.9 bits (86), Expect = 0.010
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKK 56
+ ++ E SGG R R +A L + +LLDEP N+LD+ + L K
Sbjct: 128 LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187
Query: 57 TLLVVSHDQSF 67
T++VV HD +F
Sbjct: 188 TIVVVLHDINF 198
Score = 35.0 bits (81), Expect = 0.042
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 29/141 (20%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELRKSP--- 284
KV+L+ V+ + +++GPNG GKST L+++ GE+T + EL +P
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72
Query: 285 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-----RQLGMFGLPSYAHTI 336
+L I K + H L D L+ PY + R R++ + Y H
Sbjct: 73 LAKKLSILKQENHINSRLTVRD-----LVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLE 126
Query: 337 PIRD-----LSGGQKARVALA 352
+ D LSGGQ+ R +A
Sbjct: 127 DLSDRYLDELSGGQRQRAFIA 147
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 39.3 bits (92), Expect = 0.002
Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 42/183 (22%)
Query: 178 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
++ +V+F Y L+ V+F + ++VG NG GKST L+ G G+
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 296
+ + + N +LRK IG Q+
Sbjct: 66 IFYNN-----------QAITDD-----------------NFEKLRK----HIGIVFQNP- 92
Query: 297 EHLFPDDT---PCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARV 349
++ F + ++ +PY++ R+ L + A P LSGGQK RV
Sbjct: 93 DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP-NALSGGQKQRV 151
Query: 350 ALA 352
A+A
Sbjct: 152 AIA 154
Score = 35.5 bits (82), Expect = 0.032
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKK-TLLVVSHD 64
SGG + RV++A L L P++++LDE T+ LD +A ++ L +++ T++ ++HD
Sbjct: 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
E SGG R RV LARAL + P +LL+DE + LD + + L ++T++ +SH
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 64 D 64
D
Sbjct: 224 D 224
Score = 39.2 bits (91), Expect = 0.002
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 38/149 (25%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270
++G +G GKST + LL + P +G+VL++ V+ I K +
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVD----------------IAKIS------ 96
Query: 271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ---- 323
ELR+ R +I Q L P T + + M+L + E+ R +
Sbjct: 97 ------DAELREVRRKKIAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDA 148
Query: 324 LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
L GL +YAH+ P +LSGG + RV LA
Sbjct: 149 LRQVGLENYAHSYP-DELSGGMRQRVGLA 176
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/57 (31%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +ARA+ ++P ++L+DEP + LD + + ++ + K+ T+++V+H+
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 39.0 bits (91), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 171 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
L +V+F PG + LL ++ L+G NG GKST L +L
Sbjct: 3 EYTNHSDTTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61
Query: 231 TPNKGKVLL 239
P++G++LL
Sbjct: 62 PPSEGEILL 70
Score = 30.1 bits (68), Expect = 1.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
SGG R R +A + + LLLDEPT+ LD+
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
Score = 29.4 bits (66), Expect = 2.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
G+ LL ++ L+G NG GKST L +L P++GE+
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHD 64
SGG + + LAR L + P +LLLDEPT+ LD ++ ++++ + T+++V+H+
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
Score = 38.5 bits (89), Expect = 0.003
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
P + ++T G+ GK +L++V+ G + +L+GP G GK+TFL L
Sbjct: 20 PAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL 67
Score = 34.7 bits (79), Expect = 0.056
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
GK +L++V+ G + +L+GP G GK+TFL L
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL 67
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 39.9 bits (93), Expect = 0.002
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVV 61
SGG + RVSLARA++ + L D+P + +D VI + L+ KT ++V
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN--KTRILV 818
Query: 62 SHDQSFLNNICTDIIHLDMK--------KLFYYKGNFTLFKKMYVQKRKELTKE 107
+H S+L + I+ K +L G F F + Y ++ E
Sbjct: 819 THGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLE 872
Score = 34.9 bits (80), Expect = 0.070
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
PP L + +TF P G + VA+VG G GKS+ L+ L E+ +G
Sbjct: 651 PPTL--NGITFSIPEGAL--------------VAVVGQVGCGKSSLLSALLAEMDKVEGH 694
Query: 237 VLLE 240
V ++
Sbjct: 695 VHMK 698
Score = 33.4 bits (76), Expect = 0.22
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK------TLLVVS 62
S G R V LARAL + +L+LDE T +DL DN +Q+ + T+L ++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLET----DNLIQSTIRTQFEDCTVLTIA 1477
Query: 63 HDQSFLNNIC--TDIIHLD 79
H LN I T +I LD
Sbjct: 1478 HR---LNTIMDYTRVIVLD 1493
Score = 31.5 bits (71), Expect = 0.79
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 27/130 (20%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL------TPNKGELRKSPRLRIGKFD 292
L + F + + VA+VG G GKS+ L+ L E+ KG + P+ + D
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713
Query: 293 QHSGEHLF--PDDTP--------CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLS 342
LF + C L L LP R ++G G+ +LS
Sbjct: 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILP-SGDRTEIGEKGV----------NLS 762
Query: 343 GGQKARVALA 352
GGQK RV+LA
Sbjct: 763 GGQKQRVSLA 772
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 38.4 bits (90), Expect = 0.003
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R RVS+A AL ++L D T LD
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 191 GGKVLLEKVNFGLDMES--------RVALVGPNGIGKSTFLNLLKGEL 230
G +VL+ G +E L G +G+GKST LN L EL
Sbjct: 12 GYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPEL 59
Score = 37.9 bits (89), Expect = 0.003
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 236 KVLLEKVNFGLDMES--------RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
+VL+ G +E L G +G+GKST LN L EL GE+ +
Sbjct: 14 EVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPELDLRTGEISEK 69
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 38.6 bits (90), Expect = 0.003
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +AR + +EP ++L+DEP + LD + + ++ + KK T+++V+H+
Sbjct: 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
Score = 34.0 bits (78), Expect = 0.090
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN-- 233
++ L +VT Y G ++ V + AL+GP+G GKST L L +L
Sbjct: 12 IIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 234 -KGKVLLEKVNF------GLDMESRVALV--GPNGIGKSTFLNLLKG 271
KG+VL + + +++ R+ +V PN KS + N+ G
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG 117
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 38.7 bits (91), Expect = 0.003
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+E SGG R RV++ RA+ EP + L DEP ++LD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Score = 33.3 bits (77), Expect = 0.16
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFL 223
L L V Y G +V G+D++ + LVGP+G GKST L
Sbjct: 4 LKLQAVRKSYDGKT----QVIKGIDLDVADGEFIVLVGPSGCGKSTLL 47
Score = 29.8 bits (68), Expect = 2.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 245 GLDMESR----VALVGPNGIGKSTFL 266
G+D++ + LVGP+G GKST L
Sbjct: 22 GIDLDVADGEFIVLVGPSGCGKSTLL 47
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 38.4 bits (89), Expect = 0.003
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP---NKGKVLLEKVN 243
Y G K + ++ ++ + AL+GP+G GKSTFL + +L P ++G++L E +N
Sbjct: 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89
Query: 244 F--------GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
L E + PN KS + N+ GE RKS
Sbjct: 90 ILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHA--LKYAGERRKS 135
Score = 38.0 bits (88), Expect = 0.004
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
S SGG + R+ +AR L ++P +LLLDEP + LD + ++ + K+ ++++V
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219
Query: 62 SHD 64
+H+
Sbjct: 220 THN 222
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 39.1 bits (91), Expect = 0.003
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L ++F + V ++G NG GKST NL+ G PNKG V
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
Score = 37.9 bits (88), Expect = 0.006
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSH 63
K +S G + R+ A ++ + P +L++DE + D + N + KT+ +SH
Sbjct: 142 KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201
Query: 64 DQSFLNNICTDIIHLDMKKLFYYK------GNFTLFKKMYVQKRKELTKEYELQEKQIRE 117
S + + CT + L ++ Y ++ F K Y Q E K++ +E+QI +
Sbjct: 202 SLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVEERKDF--REEQISQ 259
Query: 118 MKSQGMSKEKAERQHSHKALKEQARKRVQK 147
+ + +++ R+ K K+ +RK +K
Sbjct: 260 FQHGLLQEDQTGRERKRKKGKKTSRKFKKK 289
Score = 36.4 bits (84), Expect = 0.019
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
L ++F + V ++G NG GKST NL+ G PNKG
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 38.7 bits (90), Expect = 0.003
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
SGG + R+ +AR L ++P ++L+DEP + LD A +++ ++ + T++VV+H+
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258
Score = 37.1 bits (86), Expect = 0.009
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 38/192 (19%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL---------- 226
L + D+ Y G L+ V+ + +S AL+GP+G GKSTFL L
Sbjct: 43 DAKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA 101
Query: 227 --KGELTPNKGKVLLEKVNFGLDMESRVALV--GPNGIGKSTFLNLLKGELTPNK-GELR 281
G + + + + VN +++ RV +V PN KS N+ G P K G++
Sbjct: 102 RIDGSVELDGQDIYQDGVNL-VELRKRVGMVFQSPNPFPKSIRENISYG---PRKHGDIN 157
Query: 282 KSPRLRI-GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 340
R+ G+ D+ + + L E+S RQ ++ +
Sbjct: 158 TGLLARLLGRDDKDAEDELV-----------------ERSLRQAALWDEVNDRLDDNALG 200
Query: 341 LSGGQKARVALA 352
LSGGQ+ R+ +A
Sbjct: 201 LSGGQQQRLCIA 212
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 38.1 bits (88), Expect = 0.004
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 55/157 (35%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG----------ELRKSPRLR- 287
L V+ + VAL+GP+G GKST L L G +T +K +++ RL
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 288 -IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----------------------------PY 317
I K ++G Y+ + FNL
Sbjct: 80 DIRKSRANTG-----------YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE 128
Query: 318 EKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+K R + L G+ +AH + LSGGQ+ RVA+A
Sbjct: 129 QKQRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIA 164
Score = 38.1 bits (88), Expect = 0.004
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYL---QTWKKT 57
Q ST SGG + RV++ARAL + ++L DEP LD +A I +D Q T
Sbjct: 148 QRVST--LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGIT 205
Query: 58 LLVVSHDQSFLNNICTDIIHLDMKKLFY 85
++V H + C I+ L +FY
Sbjct: 206 VVVTLHQVDYALRYCERIVALRQGHVFY 233
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 38.1 bits (89), Expect = 0.004
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLD---NYLQTWKKTLLVVSHDQ 65
FSGG + R + + L+ L +LDE + LD++A+ + N L T + ++++++H Q
Sbjct: 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ 211
Query: 66 SFLNNICTDIIHLDMKKLFYYKGNFTLFKKM 96
L+ I D +H+ G+ L K++
Sbjct: 212 RLLDYIKPDYVHVMQNGKIIKTGDAELAKEL 242
Score = 30.4 bits (69), Expect = 1.1
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDME 249
+L+ +N ++ A++GPNG GKST ++ G +G +L + + LD+E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI-LDLE 77
Score = 29.6 bits (67), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 271
+L+ +N ++ A++GPNG GKST ++ G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 37.1 bits (87), Expect = 0.004
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 104 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 163
L +EY+ ++ + + K+ E + KA K+ A K K + + K+ KPR +
Sbjct: 47 LNEEYKDLKESLEA---ALLDKK--ELKAWEKAEKK-AEKAKAKAEKKKAKKEEPKPRLF 100
Query: 164 IVKF 167
++ F
Sbjct: 101 VLDF 104
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 37.2 bits (87), Expect = 0.005
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 221 TFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL---------KG 271
T+ NL + LL ++ + + AL+G +G GK+T L++L G
Sbjct: 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG 64
Query: 272 ELTPNKGELRKSPRLRIG---KFDQHSGE 297
E+ N L K+ + G + D HS
Sbjct: 65 EILINGRPLDKNFQRSTGYVEQQDVHSPN 93
Score = 33.4 bits (77), Expect = 0.10
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 14 RIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICT 73
R R+++ L +P++L LDEPT+ LD A N ++ KK + Q+ L CT
Sbjct: 114 RKRLTIGVELAAKPSILFLDEPTSGLDSQAAY---NIVRFLKK---LADSGQAIL---CT 164
Query: 74 DIIHLDMKKLFYYKGNFTLFKK 95
IH +F L K+
Sbjct: 165 --IHQPSASIFEKFDRLLLLKR 184
Score = 29.9 bits (68), Expect = 1.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 209 VALVGPNGIGKSTFLNLLKG 228
AL+G +G GK+T L++L G
Sbjct: 36 TALMGESGAGKTTLLDVLAG 55
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 37.7 bits (87), Expect = 0.005
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
++EK T SGG + R+ +ARA+ ++P +LL+DEP + LD
Sbjct: 155 LKEKGTA-LSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
Score = 27.7 bits (61), Expect = 9.1
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVN 243
+ GG + L V+ + + +A +GP+G GKST L +L P +G++L N
Sbjct: 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN 88
Query: 244 F------GLDMESRVALV--GPNGIGKSTFLNL 268
+ + +V +V PN KS + N+
Sbjct: 89 IYDSQINSVKLRRQVGMVFQRPNPFPKSIYENI 121
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 0.006
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 1 MQEKSTKE---FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK- 56
MQ+ +E SGG + RV++A A+ + P +++LDE T+ LD + L ++ +
Sbjct: 130 MQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189
Query: 57 ---TLLVVSHD 64
T++ ++HD
Sbjct: 190 YQMTVISITHD 200
Score = 35.1 bits (81), Expect = 0.045
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 226 LKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP- 284
L + ++ K L V+F + ++++G NG GKST + L+ G L G++
Sbjct: 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69
Query: 285 ----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYE--KSRRQ--LGMFG 328
R +IG Q+ + L N +P+E K R L + G
Sbjct: 70 LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG 129
Query: 329 LPSYAHTIPIRDLSGGQKARVALA 352
+ + P R LSGGQK RVA+A
Sbjct: 130 MQDFKEREPAR-LSGGQKQRVAIA 152
Score = 31.2 bits (71), Expect = 0.71
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 182 LHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ ++TF Y K L V+F + ++++G NG GKST + L+ G L G++++
Sbjct: 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66
Query: 240 E 240
+
Sbjct: 67 D 67
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 37.9 bits (89), Expect = 0.006
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ SGG + RV++ARAL P +LL DE T+ LD
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Score = 35.5 bits (83), Expect = 0.030
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 71/192 (36%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPN 233
+ L++V+ P G++ FG+ +G +G GKST + NLL+ P
Sbjct: 16 RTIHALNNVSLHIPAGEI------FGV--------IGASGAGKSTLIRCINLLE---RPT 58
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
G+VL V+ G D+ AL ++ ELRK+ R +IG Q
Sbjct: 59 SGRVL---VD-GQDL---TAL---------------------SEKELRKA-RRQIGMIFQ 89
Query: 294 H---------SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRD 340
H P ++L P + + + L + GL A P
Sbjct: 90 HFNLLSSRTVFDNVALP--------LELAGTPKAEIKARVTELLELVGLSDKADRYP-AQ 140
Query: 341 LSGGQKARVALA 352
LSGGQK RVA+A
Sbjct: 141 LSGGQKQRVAIA 152
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 37.3 bits (87), Expect = 0.006
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+ +AR + + P +LLLDEP + LD
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
Score = 30.0 bits (68), Expect = 1.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 206 ESRV-ALVGPNGIGKSTFLNLLKG--ELTPNK---GKVLLEKVNF---GLDM---ESRVA 253
+++V A +GP+G GKST L EL P + G++LL+ N D+ ++V
Sbjct: 38 KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVG 97
Query: 254 LV 255
+V
Sbjct: 98 MV 99
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 38.2 bits (89), Expect = 0.007
Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 49/174 (28%)
Query: 202 GLDMESRVALV-GPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260
GL + +V G G G ST L + F + +E + +GI
Sbjct: 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNT-----------DGFHIGVEGVITY---DGI 127
Query: 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT---------PCEYLMK 311
+G++ + + D H HL +T P
Sbjct: 128 TPEEIKKHYRGDV------------VYNAETDVHFP-HLTVGETLDFAARCKTPQNRPDG 174
Query: 312 LFNLPYEKSRRQLGM--FGLPSYAHTIP-------IRDLSGGQKARVALAELTL 356
+ Y K + M +GL +HT +R +SGG++ RV++AE +L
Sbjct: 175 VSREEYAKHIADVYMATYGL---SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225
Score = 29.7 bits (67), Expect = 3.0
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 14 RIRVSLARALFLEPTLLL-LDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNIC 72
R R+++ L +P LLL LDEPT+ LD W + + +K H Q+ L C
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA-W--SICKLMRKL---ADHGQAIL---C 957
Query: 73 TDIIH 77
T IH
Sbjct: 958 T--IH 960
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 37.9 bits (88), Expect = 0.007
Identities = 38/167 (22%), Positives = 57/167 (34%), Gaps = 38/167 (22%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
+ +L +N + VA+VG +G GK+T L ++ G G
Sbjct: 392 RVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-------------KGRGE 438
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
E G + K+T L+ GE P GE+ LR D ++ +
Sbjct: 439 EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEI--------- 489
Query: 309 LMKLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAEL 354
L GL + +LS GQK R LA+L
Sbjct: 490 ---------------LNRAGLSDAVLYRRKFSELSTGQKERAKLAKL 521
Score = 31.7 bits (72), Expect = 0.66
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKK---TLLVVSH 63
E S G + R LA+ L P +LL+DE HLD L AV + ++ TL+VV+H
Sbjct: 507 ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTH 566
Query: 64 DQSFLNNICTDII 76
N + D +
Sbjct: 567 RPEVGNALRPDTL 579
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 37.3 bits (86), Expect = 0.007
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWK 55
++S E SGG + RV+LA + ++ L+LDEPT LD +N L+ + +K
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN---KEYK 201
Query: 56 KTLLVVSHDQSFLNNICTDIIHLDMKKL------FYYKGNFTLFKKMYVQKRKELTKEYE 109
K +++V+H+ + I ++I + K+ F N L K+ + K Y+
Sbjct: 202 KRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYK 261
Query: 110 LQEKQI 115
L+ K I
Sbjct: 262 LKNKGI 267
Score = 31.9 bits (72), Expect = 0.48
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 24/122 (19%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGE--------------LRKSPRLR--IGKFDQHSGE 297
++G G GKST + L G + G+ +++ RLR IG Q
Sbjct: 42 VIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101
Query: 298 HLFPDDTPCEYLMKLFNL------PYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVA 350
LF + + NL Y+K L + LP Y P +LSGGQK RVA
Sbjct: 102 QLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF-ELSGGQKRRVA 160
Query: 351 LA 352
LA
Sbjct: 161 LA 162
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 37.2 bits (86), Expect = 0.008
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI 45
+ SGG R RV +ARAL P +LLDEP +D +VI
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174
Score = 30.6 bits (69), Expect = 0.95
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------------LR 281
KG+ ++E V+ ++ V L+GPNG GK+T ++ G + + G L
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH 73
Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE--KSRRQLGMFGLPSYAHTIPIR 339
R IG Q + +F + + LM + + + +R+ L H +R
Sbjct: 74 ARARRGIGYLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR 131
Query: 340 D-----LSGGQKARVALA 352
D LSGG++ RV +A
Sbjct: 132 DSMGQSLSGGERRRVEIA 149
Score = 30.2 bits (68), Expect = 1.4
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGL 246
G+ ++E V+ ++ V L+GPNG GK+T ++ G + + G ++++ + L
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL 69
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 37.5 bits (87), Expect = 0.008
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
E+S SGG + RV++A L ++P +L+ DEPT LD + + K KT+
Sbjct: 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230
Query: 60 VVSHDQSFLNNICTDIIHLDMKKL 83
V++H + + ++I +D K+
Sbjct: 231 VITHTMEHVLEVADEVIVMDKGKI 254
Score = 37.1 bits (86), Expect = 0.009
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270
++G +G GKST + G + G + + + G + + P
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPY------------ 104
Query: 271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-RQLGMFGL 329
K + K R R+ Q LF D + + L +KS ++L F L
Sbjct: 105 ----SKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYL 160
Query: 330 ------PSYAHTIPIRDLSGGQKARVALA 352
SY P LSGGQK RVA+A
Sbjct: 161 NKMGLDDSYLERSPF-GLSGGQKRRVAIA 188
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 36.8 bits (86), Expect = 0.009
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 10 SGGWR------IRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKK 56
SGG + IR++LA +L LDEPT +LD L +I +
Sbjct: 117 SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII--EERKSQKNF 174
Query: 57 TLLVVSHDQSFLN 69
L+V++HD+ ++
Sbjct: 175 QLIVITHDEELVD 187
Score = 33.3 bits (77), Expect = 0.100
Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 38/125 (30%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH---SGEHL------FPDD 303
+VG NG GK+T + LK LT P + G D GE F +
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTG-----ELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80
Query: 304 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH--------TIPIRDLSGGQKA------RV 349
+Y R L + + H SGG+K R+
Sbjct: 81 NGKKY----------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRL 130
Query: 350 ALAEL 354
ALAE
Sbjct: 131 ALAET 135
Score = 29.1 bits (66), Expect = 3.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 210 ALVGPNGIGKSTFLNLLK----GELTPNK 234
+VG NG GK+T + LK GEL PN
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNS 54
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 37.3 bits (87), Expect = 0.010
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
L+G +G+GKST +N L EL GE+ +
Sbjct: 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEK 198
Score = 35.3 bits (82), Expect = 0.036
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 209 VALVGPNGIGKSTFLNLLKGELT 231
L+G +G+GKST +N L EL
Sbjct: 167 TVLLGQSGVGKSTLINALLPELN 189
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 36.3 bits (85), Expect = 0.011
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + +V LAR L +P +L+LDEPT +D+ A
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 36.8 bits (86), Expect = 0.013
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + + LA+ L L P +L+LDEPT +D+ A
Sbjct: 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440
Score = 32.2 bits (74), Expect = 0.48
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
+L + ++T + G K L + V+ + V+L G NG GKST + +L G
Sbjct: 3 EYLLEMKNITKTFGGVKAL-DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
Score = 29.9 bits (68), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 271
L+ V+ + V+L G NG GKST + +L G
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 37.3 bits (86), Expect = 0.015
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 173 PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 232
P L P V + V P G+ ++++N A +G NG GK+T L++L G L P
Sbjct: 923 PGLVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP 982
Query: 233 NKGKVLLEKVNFGLDMESRVALV 255
G VL+ G D+E+ + V
Sbjct: 983 TSGTVLVG----GKDIETNLDAV 1001
Score = 34.6 bits (79), Expect = 0.086
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQ 65
+SGG + ++S A AL P L+LLDEPT +D A L N + + + +++ SH
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
Query: 66 SFLNNICT 73
+CT
Sbjct: 2131 EECEALCT 2138
Score = 30.4 bits (68), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
G+ ++++N A +G NG GK+T L++L G L P G
Sbjct: 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG 985
Score = 29.2 bits (65), Expect = 4.3
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
+L L+++T Y G ++++ G+ L+G NG GK+T +L G+ T G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG 1994
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 36.0 bits (83), Expect = 0.016
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 178 PVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
+L V+ Y GK+ L +V+ ++ V L+G NG GK+T L L G+ G+
Sbjct: 4 VMLSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
Query: 237 VLLE 240
++ +
Sbjct: 62 IVFD 65
Score = 32.5 bits (74), Expect = 0.26
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPT 36
SGG + +++ RAL +P LLLLDEP+
Sbjct: 139 SGGEQQMLAIGRALMSQPRLLLLDEPS 165
Score = 31.4 bits (71), Expect = 0.49
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 235 GKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
GK+ L +V+ ++ V L+G NG GK+T L L G+ G +
Sbjct: 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 36.7 bits (85), Expect = 0.018
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RVSLARA++ + LLD+P + LD
Sbjct: 784 SGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Score = 35.5 bits (82), Expect = 0.050
Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 30/140 (21%)
Query: 229 ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--------- 279
EL P KVLL V+ + ++G G GKST L L + ++G
Sbjct: 669 ELEP---KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAY 725
Query: 280 -------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY 332
+ + R I FD+ L D L E QLG GL +
Sbjct: 726 VPQQAWIMNATVRGNILFFDEEDAARL-ADAVRVSQL--------EADLAQLGG-GLETE 775
Query: 333 AHTIPIRDLSGGQKARVALA 352
+ +LSGGQKARV+LA
Sbjct: 776 IGEKGV-NLSGGQKARVSLA 794
Score = 33.6 bits (77), Expect = 0.20
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
L P VL L DV+ P GK+ + ++G G GKST L L + ++
Sbjct: 670 LEPKVL-LRDVSVSVPRGKLTV--------------VLGATGSGKSTLLQSLLSQFEISE 714
Query: 235 GKVLLEK 241
G+V E+
Sbjct: 715 GRVWAER 721
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 36.6 bits (85), Expect = 0.018
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 186 TFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
F YP LE VNF L + + GP G GKST L+L++ ++G + +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 245 G---LD-MESRVALVG 256
LD SR+A+V
Sbjct: 380 TKLQLDSWRSRLAVVS 395
Score = 35.8 bits (83), Expect = 0.034
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 16/68 (23%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV-------IWLDNYLQTW--KKTLLV 60
SGG + R+S+ARAL L +L+LD+ L+AV I L N L+ W +T+++
Sbjct: 453 SGGQKQRISIARALLLNAEILILDDA-----LSAVDGRTEHQI-LHN-LRQWGEGRTVII 505
Query: 61 VSHDQSFL 68
+H S L
Sbjct: 506 SAHRLSAL 513
Score = 34.7 bits (80), Expect = 0.072
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
P LE VNF L + + GP G GKST L+L++ ++G++R
Sbjct: 324 PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 36.0 bits (83), Expect = 0.019
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELR 281
LVGPNG GKST L + G +T G ++
Sbjct: 30 LVGPNGAGKSTLLARMAG-MTSGSGSIQ 56
Score = 35.2 bits (81), Expect = 0.033
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME 249
LVGPNG GKST L + G +T G + G +E
Sbjct: 30 LVGPNGAGKSTLLARMAG-MTSGSGSIQFA----GQPLE 63
Score = 34.1 bits (78), Expect = 0.087
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPT--------LLLLDEPTNHLDLNAVIWLDNYLQTWK 55
+ST + SGG RV LA A+ L+ T LLLLDEP N LD+ LD L
Sbjct: 121 RSTNQLSGGEWQRVRLA-AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 56 K---TLLVVSHD 64
+ +++ SHD
Sbjct: 180 QQGLAIVMSSHD 191
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 36.6 bits (85), Expect = 0.022
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 170 PNPPYLPP-PVLGLHDVTFGY--PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
PNPP P P + + + F + + L +N + + S VA+VG G GK++ ++ +
Sbjct: 604 PNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM 663
Query: 227 KGELTP 232
GEL P
Sbjct: 664 LGELPP 669
Score = 33.6 bits (77), Expect = 0.20
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ-TWKK-----TLLVVS 62
FS G R +SLARAL +L+LDE T +D+ D +Q T ++ T+L+++
Sbjct: 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT----DALIQKTIREEFKSCTMLIIA 1430
Query: 63 HDQSFLNNI--CTDIIHLD 79
H LN I C I+ LD
Sbjct: 1431 HR---LNTIIDCDRILVLD 1446
Score = 32.4 bits (74), Expect = 0.46
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RVS+ARA++ + + D+P + LD
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Score = 32.0 bits (73), Expect = 0.50
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 34/134 (25%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-------KGELRKSPRLR-IGK 290
L +N + + S VA+VG G GK++ ++ + GEL P +G + P++ I
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI-- 690
Query: 291 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDL------- 341
F+ +++ LF P++ R R + + L +P DL
Sbjct: 691 FNATVRDNI------------LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERG 738
Query: 342 ---SGGQKARVALA 352
SGGQK RV++A
Sbjct: 739 VNISGGQKQRVSMA 752
Score = 32.0 bits (73), Expect = 0.58
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 176 PPP------VLGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
PPP + DV Y P +L ++F + +V +VG G GKS+ LN L
Sbjct: 1228 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287
Query: 229 ELTPNKGKVLLEKVN---FGL 246
+ +G++L++ + FGL
Sbjct: 1288 IVELERGRILIDGCDISKFGL 1308
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 35.8 bits (83), Expect = 0.024
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA----VIWLDNYLQTWKKTLLVVSH 63
E SGG R+ +A AL E ++ DEPT LD+ A + L++ +Q +L+V+H
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
Query: 64 D 64
D
Sbjct: 200 D 200
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 35.0 bits (81), Expect = 0.024
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 2 QEKSTKEFSGGWRIRVSLARALF--LEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKK 56
Q+ ST SGG RV LA LF TL +LDEP+ + D+N ++ + L
Sbjct: 83 QKLST--LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
Query: 57 TLLVVSHDQSFL 68
T++++ H+ L
Sbjct: 141 TVILIEHNLDVL 152
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 36.1 bits (84), Expect = 0.025
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
VAL+G +G+GKST +N L GE
Sbjct: 198 VALLGSSGVGKSTLVNALLGE 218
Score = 36.1 bits (84), Expect = 0.025
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 252 VALVGPNGIGKSTFLNLLKGE 272
VAL+G +G+GKST +N L GE
Sbjct: 198 VALLGSSGVGKSTLVNALLGE 218
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 35.6 bits (82), Expect = 0.025
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 226 LKGELTP-NKGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 282
+K L P +K K L+ ++ + LVG NG GKST N++ G L+P G++ +
Sbjct: 24 MKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83
Score = 33.6 bits (77), Expect = 0.10
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ LVG NG GKST N++ G L+P GKV
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKV 81
Score = 28.2 bits (63), Expect = 6.2
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSH 63
K++S G R ++ + + + P +L++DE + D + + +K KT+ VSH
Sbjct: 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201
Query: 64 DQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIRE 117
+ + CT I ++ KL Y G Y + K+ + ++K+ R
Sbjct: 202 NLGQVRQFCTKIAWIEGGKLKDY-GELDDVLPKYEAFLNDFKKKSKAEQKEFRN 254
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 36.1 bits (84), Expect = 0.027
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
A VG NG GKS L GEL GE +
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQ 63
Score = 35.8 bits (83), Expect = 0.033
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 173 PYLPP--PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
LP P + L++ Y + +L +++ ++ +VGPNG GKST L+L+ G+
Sbjct: 252 HALPANEPRIVLNNGVVSY-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309
Score = 35.8 bits (83), Expect = 0.035
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 19 LARALFLEPTLLLLDEPTNHLD-LNAVI---WLDNYLQTWKKTLLVVSHDQ 65
+ RAL PTLL+LDEP LD LN + ++D + + LL VSH
Sbjct: 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462
Score = 33.4 bits (77), Expect = 0.15
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
K S G + L +AL EP LL+LDEP + LD+ +
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
Score = 32.7 bits (75), Expect = 0.34
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 254 LVGPNGIGKSTFLNLLKGE 272
+VGPNG GKST L+L+ G+
Sbjct: 291 IVGPNGAGKSTLLSLITGD 309
Score = 32.3 bits (74), Expect = 0.39
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGK 236
A VG NG GKS L GEL G+
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGE 59
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 35.7 bits (83), Expect = 0.030
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
E++ SGG + +V++AR L P +L+LDEPT +D+ A
Sbjct: 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Score = 32.7 bits (75), Expect = 0.32
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 178 PVLGLHDVTFGYPGGKVLLE---KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
+L L + +PG K L V G M ALVG NG GKST + +L G T +
Sbjct: 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVM----ALVGENGAGKSTMMKVLTGIYTRDA 58
Query: 235 GKV--LLEKVNFGLDMESRVALVGPNGIG-KSTFLNLLKGELT 274
G + L ++V F S+ A GIG LNL+ +LT
Sbjct: 59 GSILYLGKEVTFNGPKSSQEA-----GIGIIHQELNLI-PQLT 95
Score = 30.4 bits (69), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELR 281
ALVG NG GKST + +L G T + G +
Sbjct: 34 ALVGENGAGKSTMMKVLTGIYTRDAGSIL 62
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 36.0 bits (83), Expect = 0.030
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
SGG + + LA+ L P +L+LDEPT +D+ A
Sbjct: 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Score = 29.0 bits (65), Expect = 4.1
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHL 39
++ GG + V +A+AL + LL+LDEP++ L
Sbjct: 141 DYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 35.5 bits (82), Expect = 0.031
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWK-KTL 58
+S + SGG ++++ L + P +++LDEPT LD + V+ L LQT + KT+
Sbjct: 140 SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTI 199
Query: 59 LVVSHD 64
++VSHD
Sbjct: 200 ILVSHD 205
Score = 32.8 bits (75), Expect = 0.23
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------------- 281
+ VN + A+VG G GKST + + L P G +
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 282 -KSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSR----RQLGMFGLPSYAH 334
+ R RIG Q LF D E + K F + ++ + R L G
Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM 139
Query: 335 TIPIRDLSGGQKARVAL 351
+ +SGGQ ++A+
Sbjct: 140 SQSPFQMSGGQMRKIAI 156
Score = 30.5 bits (69), Expect = 1.3
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 184 DVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+V++ Y G + VN + A+VG G GKST + + L P G V
Sbjct: 7 NVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV 64
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.5 bits (82), Expect = 0.035
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK---TLLVVS 62
+ SGG RV +A A+ P LL+ DEPT LD + A I ++ L+ +K L++++
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQI-IELLLELQQKENMALVLIT 211
Query: 63 HD 64
HD
Sbjct: 212 HD 213
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 34.7 bits (81), Expect = 0.037
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
LVG +G+GKST LN L EL GE+ +
Sbjct: 88 SVLVGQSGVGKSTLLNALLPELVLATGEISEK 119
Score = 34.7 bits (81), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
LVG +G+GKST LN L EL
Sbjct: 88 SVLVGQSGVGKSTLLNALLPEL 109
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 35.1 bits (81), Expect = 0.045
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 184 DVTFGYPGG-----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+V++ Y K+ L+ VN + + ++G NG GKST + L P++GKV
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68
Query: 239 LEKVN 243
++ ++
Sbjct: 69 VDGLD 73
Score = 31.6 bits (72), Expect = 0.58
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 37/147 (25%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 292
+ K+ L+ VN + + ++G NG GKST + L P++G ++ + D
Sbjct: 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG------KVYVDGLD 73
Query: 293 QHSGEHLF------------PDDTPCEYLMK---------LFNLPYEKSRR------QLG 325
E+L+ PD+ +++ L P E R ++G
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG 133
Query: 326 MFGLPSYAHTIPIRDLSGGQKARVALA 352
M+ +A + LSGGQK RVA+A
Sbjct: 134 MYEYRRHAPHL----LSGGQKQRVAIA 156
Score = 31.2 bits (71), Expect = 0.65
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RV++A L + P ++ DEPT LD
Sbjct: 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 34.4 bits (80), Expect = 0.050
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
S G R + LARAL + +L+LDE T +D
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVD 171
Score = 34.4 bits (80), Expect = 0.053
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 183 HDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+V+ Y P +L+ ++F + +V +VG G GKS+ L L + + G +L++
Sbjct: 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG 65
Query: 242 VN 243
V+
Sbjct: 66 VD 67
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 34.8 bits (81), Expect = 0.051
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 254 LVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLR 287
+VG +G+GKSTF+N L +L P+K +
Sbjct: 9 VVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHIT 43
Score = 33.3 bits (77), Expect = 0.17
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 211 LVGPNGIGKSTFLN-LLKGELTPNKG 235
+VG +G+GKSTF+N L +L P+K
Sbjct: 9 VVGESGLGKSTFINTLFGTKLYPSKY 34
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 35.3 bits (81), Expect = 0.059
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 170 PNPPYLP-PPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
NPP P P + + + F + K L +N + + S VA+VG G GK++ ++ +
Sbjct: 604 QNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM 663
Query: 227 KGELTP 232
GEL+
Sbjct: 664 LGELSH 669
Score = 34.6 bits (79), Expect = 0.10
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK------TLLV 60
+ FS G R +SLARAL +L+LDE T +D+ D+ +Q + T+LV
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR----TDSLIQRTIREEFKSCTMLV 1425
Query: 61 VSHDQSFLNNI--CTDIIHLDMKKLFYY 86
++H LN I C I+ L ++ Y
Sbjct: 1426 IAHR---LNTIIDCDKILVLSSGQVLEY 1450
Score = 33.0 bits (75), Expect = 0.27
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
DV Y PG +L ++F + +V +VG G GKS+ LN L + KG+++++
Sbjct: 1239 DVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC 1298
Query: 243 N---FGLDMESRVALVGP 257
+ FGL RV + P
Sbjct: 1299 DVAKFGLTDLRRVLSIIP 1316
Score = 32.6 bits (74), Expect = 0.34
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-------KGELRKSPRLRIGKF 291
L +N + + S VA+VG G GK++ ++ + GEL+ +G + P++ F
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVS-WIF 691
Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDL-------- 341
+ E++ LF +E R R + + L +P RDL
Sbjct: 692 NATVRENI------------LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739
Query: 342 --SGGQKARVALA 352
SGGQK RV++A
Sbjct: 740 NISGGQKQRVSMA 752
Score = 31.1 bits (70), Expect = 1.0
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL---QTWKKTLLVVSHDQS 66
SGG + RVS+ARA++ + + D+P + LD + + + + KT ++V++
Sbjct: 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH 801
Query: 67 FLNNICTDIIHLDMKKLFYYKGNF-------TLFKKM 96
FL + D I L + + +G F +LFKK+
Sbjct: 802 FLPLM--DRIILVSEGMIKEEGTFAELSKSGSLFKKL 836
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 33.9 bits (78), Expect = 0.077
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
Query: 173 PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 232
P LPP L +V+F KV G ++ +VG G GKST + L L
Sbjct: 18 PDLPPV---LKNVSF----------KVKAG----EKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 233 NKGKVLLEKVNFGL----DMESRVALV 255
+GK+ ++ ++ D+ S + ++
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTII 87
Score = 33.2 bits (76), Expect = 0.12
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL--NAVIWLDNYLQTWKKTLLVVSHDQS 66
S G R + LARAL P +L+LDE T +D +A+I + T+L ++H
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHR-- 183
Query: 67 FLNNI--CTDIIHLDMKKLFYY 86
L I I+ +D ++ Y
Sbjct: 184 -LRTIIDYDKILVMDAGEVKEY 204
Score = 28.9 bits (65), Expect = 3.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
P+ VL + V+F + ++ +VG G GKST
Sbjct: 18 PDLPPVL-KNVSFKVKAGEKIGIVGRTGAGKSTL 50
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 34.0 bits (77), Expect = 0.077
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 312
++GPNG GKS L L L L L +G + P E+ ++
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIEE 62
Query: 313 FNL 315
F +
Sbjct: 63 FLI 65
Score = 32.8 bits (74), Expect = 0.22
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 3 EKSTKEFSGGWRIRVSLARALFL---EPTLLLLDEPTNHLDLNAVIWLDNYL---QTWKK 56
+ K S G + ++L AL + +LLL+DEP N L + L L
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243
Query: 57 TLLVVSHDQSFLN 69
L+ +H L+
Sbjct: 244 QLIFTTHSPLLLD 256
Score = 30.5 bits (68), Expect = 1.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 210 ALVGPNGIGKSTFLNLLKG 228
++GPNG GKS L L
Sbjct: 3 VIIGPNGSGKSNLLKALAL 21
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 34.0 bits (78), Expect = 0.084
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 274
+ + +L ++ ++ AL+G NG GKST L L G+LT
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52
Score = 33.6 bits (77), Expect = 0.10
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 209 VALVGPNGIGKSTFLNLLKGELT 231
AL+G NG GKST L L G+LT
Sbjct: 30 TALLGRNGAGKSTLLKALAGDLT 52
Score = 32.9 bits (75), Expect = 0.18
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 10 SGGWRIRVSLARAL---------FLEPTLLLLDEPTNHLDL 41
SGG RV AR L P LLLDEPT LDL
Sbjct: 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 34.3 bits (79), Expect = 0.085
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 94 KKMYVQKRKELT-KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 152
+K Q+ KE KE E + K+ +++K + + + A KE+AR R ++ +
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKER 336
Query: 153 PKELLEKPREYIVKFRFPNPP 173
++ K R+ + K ++P PP
Sbjct: 337 GEKKKLKRRK-LGKHKYPEPP 356
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 33.7 bits (77), Expect = 0.10
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 184 DVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN-LLKGELTPNKGKVLLEK 241
D+T Y GG +LE ++F + RV L+G G GKST L+ L+ L +G + ++
Sbjct: 7 DLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLR--LLNTEGDIQIDG 64
Query: 242 VNF 244
V++
Sbjct: 65 VSW 67
Score = 31.0 bits (70), Expect = 0.73
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
G +LE ++F + RV L+G G GKST L+
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAF 50
Score = 30.6 bits (69), Expect = 1.00
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
S G + + LAR++ + +LLLDEP+ HLD
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.4 bits (79), Expect = 0.11
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 10 SGGWRIRVSLARALFLEPTL--------LLLDEPTNHLD---LNAVIWLDNYLQTWKKTL 58
SGG R SLA L L L L LDEP LD L + + L + + +
Sbjct: 817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQI 876
Query: 59 LVVSHDQSFLN 69
+++SH +
Sbjct: 877 IIISHVEELKE 887
>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG).
The developmentally regulated GTP-binding protein (DRG)
subfamily is an uncharacterized member of the Obg
family, an evolutionary branch of GTPase superfamily
proteins. GTPases act as molecular switches regulating
diverse cellular processes. DRG2 and DRG1 comprise the
DRG subfamily in eukaryotes. In view of their widespread
expression in various tissues and high conservation
among distantly related species in eukaryotes and
archaea, DRG proteins may regulate fundamental cellular
processes. It is proposed that the DRG subfamily
proteins play their physiological roles through RNA
binding.
Length = 233
Score = 33.3 bits (77), Expect = 0.12
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 207 SRVALVGPNGIGKSTFLNLLKG 228
+RVALVG +GKST L+ L
Sbjct: 1 ARVALVGFPSVGKSTLLSKLTN 22
Score = 33.3 bits (77), Expect = 0.12
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 250 SRVALVGPNGIGKSTFLNLLKG 271
+RVALVG +GKST L+ L
Sbjct: 1 ARVALVGFPSVGKSTLLSKLTN 22
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 34.0 bits (78), Expect = 0.12
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLL 59
++ E SGG + +V +++ L P +++ DEPT +D+ A + + L K +L
Sbjct: 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
Query: 60 VVSHDQSFLNNICTDII 76
+VS + + +C I
Sbjct: 464 MVSSELPEIITVCDRIA 480
Score = 32.4 bits (74), Expect = 0.32
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
G L+ VN + AL+G NG GKST + +L G P KG + +
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Score = 31.7 bits (72), Expect = 0.66
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKG 278
AL+G NG GKST + +L G P KG
Sbjct: 35 ALLGENGAGKSTLMKVLSGIHEPTKG 60
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 33.4 bits (77), Expect = 0.12
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTL----------LLLDEPTNHLD---LNAVIWLDN 49
+ SGG SL+ AL L L L +DE LD L AV
Sbjct: 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE 177
Query: 50 YLQTWKKTLLVVSHDQSFLNNICTDII 76
++T + + V+SH + I +
Sbjct: 178 LIRTENRMVGVISHVEELKERIPQRLE 204
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 32.3 bits (74), Expect = 0.12
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
RVALVG PN +GKST +N L G
Sbjct: 1 RVALVGRPN-VGKSTLINALTGA 22
Score = 32.3 bits (74), Expect = 0.12
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
RVALVG PN +GKST +N L G
Sbjct: 1 RVALVGRPN-VGKSTLINALTGA 22
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 31.2 bits (71), Expect = 0.12
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+A+ G +G GKST L +L VL E
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33
Score = 30.4 bits (69), Expect = 0.22
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
+A+ G +G GKST L +L
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQL 23
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 33.8 bits (77), Expect = 0.15
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 180 LGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
+ L DV + L ++ + V +VG NG GKST L G P +G
Sbjct: 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397
Query: 236 KVLLE 240
++LL+
Sbjct: 398 EILLD 402
Score = 31.1 bits (70), Expect = 0.89
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V +VG NG GKST L G P +GE+
Sbjct: 371 VFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 33.4 bits (77), Expect = 0.16
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
RVALVG PN +GKS+ LN L GE
Sbjct: 213 RVALVGKPN-VGKSSLLNKLAGE 234
Score = 33.4 bits (77), Expect = 0.16
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
RVALVG PN +GKS+ LN L GE
Sbjct: 213 RVALVGKPN-VGKSSLLNKLAGE 234
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 33.3 bits (76), Expect = 0.18
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIW--LDNYLQTWKKTLLVVSH 63
E + G +V +A AL +P LL+ DEPTN ++ A I+ L Q T+L++SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 64 DQSFLNNICTDI 75
D ++ I
Sbjct: 218 DLQMISQWADKI 229
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 33.1 bits (76), Expect = 0.19
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPNKGKVLL--EKVNFGLDMESRVALVGPNGIGKST 264
+ +VG +G+GK+TF+N L L + E + L+++ A + +G
Sbjct: 25 TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF--HL 82
Query: 265 FLNLLKGELTPNKGE 279
L ++ TP G+
Sbjct: 83 NLTVI---DTPGFGD 94
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 32.9 bits (75), Expect = 0.22
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 16 RVSLARALFLEPTLLLLDEPTNHLD--LNAVIW--LDNYLQTWKKTLLVVSHDQSFLNNI 71
+V +A AL +P LL+ DEPTN ++ A I+ L Q T+L++SHD L+
Sbjct: 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQW 225
Query: 72 CTDI 75
I
Sbjct: 226 ADKI 229
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 29.8 bits (68), Expect = 0.27
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNK 234
L GP+G GKST ++ ++ L P K
Sbjct: 24 TLLTGPSGSGKSTLIDAIQTLLVPAK 49
Score = 29.8 bits (68), Expect = 0.27
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNK 277
L GP+G GKST ++ ++ L P K
Sbjct: 24 TLLTGPSGSGKSTLIDAIQTLLVPAK 49
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 32.0 bits (74), Expect = 0.28
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
++A++G PN +GKS+ LN L GE
Sbjct: 4 KIAIIGRPN-VGKSSLLNALLGE 25
Score = 32.0 bits (74), Expect = 0.28
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
++A++G PN +GKS+ LN L GE
Sbjct: 4 KIAIIGRPN-VGKSSLLNALLGE 25
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.5 bits (74), Expect = 0.30
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 99 QKRKELTKEYELQEKQIREM-KSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 152
+K+KE + ELQ+KQ E + + + KE+ Q K +E A++ K E
Sbjct: 81 RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Score = 29.0 bits (65), Expect = 4.6
Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 152
++ K+L KE L ++ ++ + + +++ + +A + A K + +
Sbjct: 101 ERLKQLEKE-RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA 153
>gnl|CDD|235210 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 31.8 bits (73), Expect = 0.32
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245
M V + G G+GK+T LN +L + + VNFG
Sbjct: 1 MMKVVVVTGVPGVGKTTVLNKALEKLKED-----YKIVNFG 36
Score = 29.1 bits (66), Expect = 2.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKGELTPN 276
M V + G G+GK+T LN +L +
Sbjct: 1 MMKVVVVTGVPGVGKTTVLNKALEKLKED 29
>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 32.6 bits (75), Expect = 0.35
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKG 228
+ VALVG +GK+T N L G
Sbjct: 2 KKLTVALVGNPNVGKTTLFNALTG 25
Score = 32.6 bits (75), Expect = 0.35
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKG 271
+ VALVG +GK+T N L G
Sbjct: 2 KKLTVALVGNPNVGKTTLFNALTG 25
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 32.4 bits (74), Expect = 0.37
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG 256
E + V +VGP GKST L +L KV + +D A VG
Sbjct: 64 ESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAI------ID-----ADVG 112
Query: 257 PNGIGKSTFLNLLK 270
+ IG F++L
Sbjct: 113 QSEIGPPGFISLAF 126
Score = 31.2 bits (71), Expect = 0.83
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 274
E + V +VGP GKST L +L
Sbjct: 64 ESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLL 98
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 31.9 bits (73), Expect = 0.38
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ G +G GK+T + LL L +V+L
Sbjct: 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVL 33
Score = 29.5 bits (67), Expect = 1.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNK 277
+ G +G GK+T + LL L
Sbjct: 3 IVFEGIDGAGKTTLIELLAERLEARG 28
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 32.5 bits (74), Expect = 0.39
Identities = 23/108 (21%), Positives = 47/108 (43%)
Query: 32 LDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 91
L E N+ + +A +DN + VS L+ I +I L+ +KL +
Sbjct: 2515 LTENNNNNNNSAKNIVDNSTYIINELESHVSKLNELLSYIDNEIKELENEKLKLLEKAKI 2574
Query: 92 LFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKE 139
+ ++ + T+E E+QI + + + KE+ ++ +S + L
Sbjct: 2575 EESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNR 2622
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 32.2 bits (72), Expect = 0.40
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 111 QEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKE 155
++K+ R++ Q +K + QH HKA K++ RKR +KD + +E
Sbjct: 148 EKKKERQLAEQLAAKRLKDEQHRHKARKQELRKR-EKDRERARRE 191
>gnl|CDD|221514 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 571 and 1310 amino
acids in length. There are two conserved sequence
motifs: LPA and ELH. EVC2 is implicated in Ellis van
Creveld chondrodysplastic dwarfism in humans. Mutations
in this protein can give rise to this congenital
condition. LIMBIN is a protein which shares around 80%
sequence homology with EVC2 and it is implicated in a
similar condition in bovine chondrodysplastic dwarfism.
Length = 429
Score = 32.1 bits (73), Expect = 0.41
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 29 LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHD-QSFLNNICTDIIHLDMKKLFYYK 87
+L +EP N L L+N L+ TL D ++ I D+I + +K L
Sbjct: 135 ILTFEEPGNMLQ-----ALEN-LEI--ATLNRADADLEACRLQISKDVIAILLKNLV-SS 185
Query: 88 GNF---TLFKKMYVQKRKELTKEYELQEKQIREM-----KSQGMSKEKAERQHS-HKALK 138
G+ T + V K++ L E LQE+ R+M + +++K E QH A
Sbjct: 186 GHLSPQTERRMSSVFKKQFLLLERRLQEEYERKMVALTAECNLETRKKMEAQHQREMAEM 245
Query: 139 EQARKRVQKDDDDEPKEL 156
EQA + +++ + E E
Sbjct: 246 EQAEELLKRAPEREAVEC 263
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 31.6 bits (71), Expect = 0.46
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 92 LFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDD 151
L ++M ++R+E E E QE+Q RE + Q + ++ + +H + EQ + DDD
Sbjct: 138 LEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE---IIEQDESETESDDDK 194
Query: 152 EPK 154
K
Sbjct: 195 TEK 197
Score = 28.5 bits (63), Expect = 4.5
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 14/63 (22%)
Query: 99 QKRKELTK--EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 156
Q+R+EL + E+E +E++I E + Q E+ ER+ + ++EQ+ DD E+
Sbjct: 133 QEREELEERMEWERREEKIDEREDQ----EEQEREREEQTIEEQS--------DDSEHEI 180
Query: 157 LEK 159
+E+
Sbjct: 181 IEQ 183
>gnl|CDD|224930 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport and
metabolism].
Length = 189
Score = 31.2 bits (71), Expect = 0.47
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
V + G G+GK+T L + EL V + VN+G M
Sbjct: 6 VVVITGVPGVGKTTVLKIALKEL------VKHKIVNYGDLM 40
Score = 28.9 bits (65), Expect = 3.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
V + G G+GK+T L + EL
Sbjct: 6 VVVITGVPGVGKTTVLKIALKEL 28
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 31.2 bits (71), Expect = 0.49
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 10 SGGWRIRVSLARAL----FLEPTLLLLDEPTNHLDL---NAVIW--LDNYLQTWKKTLLV 60
SGG + +LA L L +LDE LD A+ L++ ++ ++V
Sbjct: 79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIV 136
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYK 87
++H +IH+ YK
Sbjct: 137 ITHLPELAELA-DKLIHIKKVITGVYK 162
Score = 27.7 bits (62), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 210 ALVGPNGIGKSTFLN 224
+ GPNG GKST L+
Sbjct: 25 IITGPNGSGKSTILD 39
Score = 27.7 bits (62), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 253 ALVGPNGIGKSTFLN 267
+ GPNG GKST L+
Sbjct: 25 IITGPNGSGKSTILD 39
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 32.1 bits (73), Expect = 0.50
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 218 GKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277
G+ F ELT + L+ +++ ++G G GK+TFL L L
Sbjct: 191 GEKRFDEEFLLELTQSADDQDALPGLEALEKYAKLLILGAPGSGKTTFLQRLALWLAQRT 250
Query: 278 GE 279
E
Sbjct: 251 LE 252
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
L+ +++ ++G G GK+TFL L L +
Sbjct: 218 ALEKYAKLLILGAPGSGKTTFLQRLALWLAQRTLE 252
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 30.9 bits (71), Expect = 0.54
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
+V + G PN +GKS+ LN L G
Sbjct: 5 KVVIAGKPN-VGKSSLLNALAGR 26
Score = 30.9 bits (71), Expect = 0.54
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
+V + G PN +GKS+ LN L G
Sbjct: 5 KVVIAGKPN-VGKSSLLNALAGR 26
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 31.1 bits (71), Expect = 0.61
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 104 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQK 147
+ E +L+E + +E K + ++K ER S K ++++ KR K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.7 bits (72), Expect = 0.63
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 14 RIRVSLARALFL---EPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSF 67
+I + +A+ L+L PTL LLDE LD L L+T +++ + HD +
Sbjct: 1705 KIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPAL 1764
Query: 68 L 68
L
Sbjct: 1765 L 1765
Score = 29.8 bits (67), Expect = 2.6
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 10 SGGWRIRVSLARALFL---EPTLLLLDEPTNHL---DLNAVIWLDNYLQTWKKTLLVVSH 63
SGG R+ LA L +PTL +LDEPT L D+ A+I++ L T++++ H
Sbjct: 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Query: 64 D 64
+
Sbjct: 871 N 871
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.9 bits (72), Expect = 0.63
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 15 IRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL--------QTWKKTLLVVSHDQS 66
IR++LA L ++ LDEPT +LD + L + L Q LLV++HD+
Sbjct: 1212 IRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271
Query: 67 FLNNI 71
F+ +
Sbjct: 1272 FVELL 1276
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 31.7 bits (72), Expect = 0.63
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
RVALVG +GKS+ LN L E
Sbjct: 452 RVALVGRPNVGKSSLLNQLTHE 473
Score = 31.7 bits (72), Expect = 0.63
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
RVALVG +GKS+ LN L E
Sbjct: 452 RVALVGRPNVGKSSLLNQLTHE 473
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 30.0 bits (67), Expect = 0.67
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
+ + GP G GKST L +L
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKL 23
Score = 30.0 bits (67), Expect = 0.67
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
+ + GP G GKST L +L
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKL 23
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 31.0 bits (71), Expect = 0.80
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 104 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 163
L ++Y+ +++++ + K E + HKA K++ ++ K + KPR +
Sbjct: 45 LNEQYKEMKEELKA---ALLDK--KELKAWHKAQKKKEKQE-AKAAKAK-----SKPRLF 93
Query: 164 IVKF 167
++ F
Sbjct: 94 VLDF 97
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 30.9 bits (71), Expect = 0.81
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 211 LVGPNGIGKSTFLNLLKGEL 230
L G +G+GKST LN L +L
Sbjct: 169 LAGQSGVGKSTLLNALAPDL 188
Score = 30.9 bits (71), Expect = 0.81
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 254 LVGPNGIGKSTFLNLLKGEL 273
L G +G+GKST LN L +L
Sbjct: 169 LAGQSGVGKSTLLNALAPDL 188
>gnl|CDD|197366 cd09916, CpxP_like, CpxP component of the bacterial
Cpx-two-component system and related proteins. This
family summarizes bacterial proteins related to CpxP, a
periplasmic protein that forms part of a two-component
system which acts as a global modulator of cell-envelope
stress in gram-negative bacteria. CpxP aids in combating
extracytoplasmic protein-mediated toxicity, and may also
be involved in the response to alkaline pH. Functioning
as a dimer, it inhibits activation of the kinase CpxA,
but also plays a vital role in the quality control
system of P pili. It has been suggested that CpxP
directly interacts with CpxA via its concave polar
surface. Another member of this family, Spy, is also a
periplasmic protein that may be involved in the response
to stress. The homology between CpxP and Spy suggests
similar functions. A characteristic 5-residue sequence
motif LTXXQ is found repeated twice in many members of
this family.
Length = 96
Score = 29.5 bits (67), Expect = 0.81
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 111 QEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPK 154
Q+ QI+ ++ ++ KA R+ +A +E+ R + D DE
Sbjct: 8 QKAQIKAIRQAARAQMKALRE-QMRAAREELRALLTADTFDEAA 50
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 31.3 bits (72), Expect = 0.81
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
++A++G PN +GKST +N L GE
Sbjct: 174 KIAIIGRPN-VGKSTLVNALLGE 195
Score = 31.3 bits (72), Expect = 0.81
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
++A++G PN +GKST +N L GE
Sbjct: 174 KIAIIGRPN-VGKSTLVNALLGE 195
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 30.5 bits (70), Expect = 0.84
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
VA++G PN +GKST LN L G+
Sbjct: 6 VAIIGRPN-VGKSTLLNALVGQ 26
Score = 30.5 bits (70), Expect = 0.84
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
VA++G PN +GKST LN L G+
Sbjct: 6 VAIIGRPN-VGKSTLLNALVGQ 26
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 30.8 bits (69), Expect = 0.86
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
+ + SGG + RV++A + L P +++LDE T+ LD
Sbjct: 133 FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
>gnl|CDD|218528 pfam05272, VirE, Virulence-associated protein E. This family
contains several bacterial virulence-associated protein
E like proteins. These proteins contain a P-loop motif.
Length = 198
Score = 30.4 bits (69), Expect = 0.96
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 211 LVGPNGIGKSTFLNLLKGE-----LTPNKGKVLLEKVNFGLDME 249
L G G GKSTFL L GE + +GK EK+ +E
Sbjct: 57 LQGAQGSGKSTFLKKLGGEWFTDSIRSFEGKDAYEKLQGVWIVE 100
Score = 30.4 bits (69), Expect = 1.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 254 LVGPNGIGKSTFLNLLKGE 272
L G G GKSTFL L GE
Sbjct: 57 LQGAQGSGKSTFLKKLGGE 75
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 31.2 bits (72), Expect = 0.97
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
++A++G PN +GKS+ +N L GE
Sbjct: 175 KIAIIGRPN-VGKSSLINALLGE 196
Score = 31.2 bits (72), Expect = 0.97
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
++A++G PN +GKS+ +N L GE
Sbjct: 175 KIAIIGRPN-VGKSSLINALLGE 196
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 30.9 bits (70), Expect = 0.99
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 100 KRKELTKEY--ELQE--KQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKE 155
KR+EL KEY +LQ+ K++ E+K + + E+AE + + LK++ ++ QK+ DE KE
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Query: 156 LLEK 159
+K
Sbjct: 426 KRQK 429
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 31.1 bits (71), Expect = 1.00
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 10 SGGWRIRVSLARALFLE---PTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
SGG R+ LA+ L TL +LDEPT L + + L LQ T++V+ H
Sbjct: 831 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 30.8 bits (71), Expect = 1.1
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
VA+VG PN +GKST LN L G+
Sbjct: 8 VAIVGRPN-VGKSTLLNALVGQ 28
Score = 30.8 bits (71), Expect = 1.1
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
VA+VG PN +GKST LN L G+
Sbjct: 8 VAIVGRPN-VGKSTLLNALVGQ 28
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 30.5 bits (69), Expect = 1.3
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 90 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDD 149
F L K ++ EL + + E Q + K + E ER+ + + +Q ++R Q D
Sbjct: 54 FELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQD 113
Query: 150 DDEPK 154
+ K
Sbjct: 114 ELARK 118
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.6 bits (70), Expect = 1.3
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Query: 94 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKA-ERQHSHKALKE-----QARKRVQK 147
+K Q KE KE + K++R+++ G + KA E + K L + + +K+ QK
Sbjct: 572 EKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQK 631
Query: 148 DDDDEPK--------------ELLEKP--REYIVKF 167
+ +E K E+L P +E IV+
Sbjct: 632 EKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQA 667
Score = 28.6 bits (65), Expect = 6.1
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKA-LKEQARKRVQK 147
QK +E + EK E+ +EK E+ + L E+A K Q+
Sbjct: 534 QKAEEAEALLKEAEKLKEEL------EEKKEKLQEEEDKLLEEAEKEAQQ 577
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.7 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 211 LVGPNGIGKSTFLN-----LLKGELTPNKGKV 237
L GP G GKST LLK P K V
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKHLGLPKKDSV 34
Score = 28.4 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
L GP G GKST L L + G +K
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKHLGLPKKD 32
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 30.0 bits (68), Expect = 1.4
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 251 RVALVGPNGIGKSTFLNLL-KGELTPNKGELR 281
RVA+VG GKST L +L +GEL +G+ R
Sbjct: 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKAR 32
Score = 29.6 bits (67), Expect = 2.0
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 208 RVALVGPNGIGKSTFLNLL-KGELTPNKGK 236
RVA+VG GKST L +L +GEL +GK
Sbjct: 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGK 30
>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase. Proteins of the
YlqF family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases. The YlqF subfamily is represented in all
eukaryotes as well as a phylogenetically diverse array
of bacteria (including gram-positive bacteria,
proteobacteria, Synechocystis, Borrelia, and
Thermotoga).
Length = 171
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 208 RVALVG-PNGIGKSTFLNLLKG 228
R +VG PN +GKST +N L+G
Sbjct: 117 RAMVVGIPN-VGKSTLINRLRG 137
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 251 RVALVG-PNGIGKSTFLNLLKG 271
R +VG PN +GKST +N L+G
Sbjct: 117 RAMVVGIPN-VGKSTLINRLRG 137
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 30.6 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
Query: 10 SGGWR------IRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + +RV++A+ L + +LL++DEPT LD
Sbjct: 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|221130 pfam11527, ARL2_Bind_BART, The ARF-like 2 binding protein BART.
BART binds specifically to ARL2.GTP with a high affinity
however it does not bind to ARL2.GDP. It is thought that
this specific interaction is due to BART being the first
identified ARL2-specific effector. The function is not
completely characterized. BART is predominantly
cytosolic but can also be found to be associated with
mitochondria. BART is also involved in binding to the
adenine nucleotide transporter ANT1.
Length = 120
Score = 28.8 bits (65), Expect = 1.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 74 DIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 104
+ + + +F +FKKM V++ EL
Sbjct: 86 NQQAKVIFEQLLAATDFLIFKKMMVKRNIEL 116
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 30.1 bits (68), Expect = 1.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
G PG L E + GL S V + GP G GK+ F
Sbjct: 8 GIPG---LDEILGGGLPRGSVVLITGPPGTGKTIFA 40
Score = 29.0 bits (65), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
GL S V + GP G GK+ F
Sbjct: 19 GLPRGSVVLITGPPGTGKTIFA 40
>gnl|CDD|213028 cd10973, CE4_DAC_u4_5s, Putative catalytic NodB homology domain of
uncharacterized bacterial polysaccharide deacetylases
which consist of a 5-stranded beta/alpha barrel. This
family contains many uncharacterized bacterial
polysaccharide deacetylases. Although their biological
functions remain unknown, all members of the family are
predicted to contain a conserved domain with a
5-stranded beta/alpha barrel, which is similar to the
catalytic NodB homology domain of rhizobial NodB-like
proteins, belonging to the larger carbohydrate esterase
4 (CE4) superfamily.
Length = 157
Score = 29.2 bits (66), Expect = 1.8
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 90 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDD 149
FTLF +Y + +Y L QIREM G+ E A +SH L +++Q+
Sbjct: 29 FTLF--VYTEAIGRGYPDY-LSWDQIREMAKYGV--EIANHSYSHPHLVRL-GEKMQEQW 82
Query: 150 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGG 192
+ ++ +EK ++ K P L F YP G
Sbjct: 83 LEWIRQDIEKSQQRFEK-ELGKKPKL-----------FAYPYG 113
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.4 bits (66), Expect = 1.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 292
+ GPNG GK+T L+ ++ L L+KS I K D
Sbjct: 22 TLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGD 62
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 29.7 bits (68), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 209 VALVGPNGIGKSTFL----NLLKGELTPNKGKVLL 239
+ LVGPNG+GK+T + LK + KVLL
Sbjct: 4 ILLVGPNGVGKTTTIAKLAARLKLK---GGKKVLL 35
Score = 27.8 bits (63), Expect = 7.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 252 VALVGPNGIGKST 264
+ LVGPNG+GK+T
Sbjct: 4 ILLVGPNGVGKTT 16
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 29.2 bits (66), Expect = 2.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 207 SRVALVGPNGIGKSTFL 223
V L G G GK+T L
Sbjct: 1 RTVILQGEAGSGKTTLL 17
Score = 29.2 bits (66), Expect = 2.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 250 SRVALVGPNGIGKSTFL 266
V L G G GK+T L
Sbjct: 1 RTVILQGEAGSGKTTLL 17
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 29.7 bits (68), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 196 LEKVNFGLDMESR---VALVGPNGIGKSTF-LNLL----KGELTPN 233
+E + FGL + + ++G G G++T L K E TP+
Sbjct: 17 VEALEFGLGIRHPGYNIFVLGEPGTGRTTLVRRYLEERAKKEPTPD 62
Score = 29.7 bits (68), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 239 LEKVNFGLDMESR---VALVGPNGIGKSTF-LNLL----KGELTPN 276
+E + FGL + + ++G G G++T L K E TP+
Sbjct: 17 VEALEFGLGIRHPGYNIFVLGEPGTGRTTLVRRYLEERAKKEPTPD 62
Score = 29.0 bits (66), Expect = 4.7
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 95 KMYVQKRKELTKEY-ELQEKQIREM----KSQG--------------MSKEKAERQHSHK 135
+ Y +++E+ +E+ E +E+ E+ K +G + + + +
Sbjct: 111 EEYEARKEEIEEEFQEKREEAFEELEEEAKEKGFALVRTPGGFVFAPLKDGEPLTEEEFE 170
Query: 136 ALKEQARKRVQKDDDDEPKELLEKPREYIVKFR 168
AL E+ R+ +++ D EL E+ +E + + R
Sbjct: 171 ALPEEEREELEEKID----ELEEELQEILRQLR 199
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 29.7 bits (67), Expect = 2.3
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK--------FDQHSGEHLFPDDTPC 306
G +G+GKS+ +N L + ++ S +L +GK F H G DTP
Sbjct: 126 AGQSGVGKSSLINALDPSVKQQVNDI--SSKLGLGKHTTTHVELFHFHGG---LIADTPG 180
Query: 307 EYLMKLFNLPYE 318
L++L E
Sbjct: 181 FNEFGLWHLEPE 192
>gnl|CDD|116614 pfam08004, DUF1699, Protein of unknown function (DUF1699). This
family contains many archaeal proteins which have very
conserved sequences.
Length = 131
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 101 RKELTKEYELQEK---QIREMKSQGMSKEKAERQHSHKA 136
RK++ + Y + + +IRE+K++G+S E+ + S ++
Sbjct: 80 RKDINEYYTVSQSVIERIRELKAEGISNEEIAEKLSRES 118
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 29.8 bits (68), Expect = 2.4
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
++A++G PN +GKS+ +N + GE
Sbjct: 180 KIAIIGRPN-VGKSSLINAILGE 201
Score = 29.8 bits (68), Expect = 2.4
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
++A++G PN +GKS+ +N + GE
Sbjct: 180 KIAIIGRPN-VGKSSLINAILGE 201
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.0 bits (68), Expect = 2.5
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 87 KGNFTLFK--KMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR 144
KG FTL + + +EL KE + E++I + + K++ E + + ++A K+
Sbjct: 81 KGVFTLGEENIEIEAQIEELKKELKKLEEKIEQ-LEAEIEKKEEELEKAKNKFLDKAWKK 139
Query: 145 VQKDDDDEPKELLE 158
+ K D E L+
Sbjct: 140 LAKKYDSNLSEALK 153
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 29.5 bits (67), Expect = 2.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 10 SGGWRIRVSLARALFLE---PTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
SGG R+ LA+ L TL +LDEPT L + V L LQ T++V+ H
Sbjct: 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230
Query: 64 D 64
+
Sbjct: 231 N 231
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 29.1 bits (66), Expect = 2.8
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 3 EKSTKEFSGGWRIRVSLARALF--LEPTLLLLDEPTNHL---DLNAVIWLDNYLQTWKKT 57
+S SGG R+ LA + L L +LDEP+ L D + +I L+ T
Sbjct: 132 SRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNT 191
Query: 58 LLVVSHDQ 65
+LVV HD+
Sbjct: 192 VLVVEHDE 199
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 29.3 bits (66), Expect = 2.8
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI-GKFDQHSGEHLFPDDTP 305
VA++G +GKST LN L G+ ++ R RI G + + +F DTP
Sbjct: 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFI-DTP 56
Score = 28.5 bits (64), Expect = 5.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
VA++G +GKST LN L G+
Sbjct: 2 FVAILGRPNVGKSTLLNQLHGQ 23
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 29.3 bits (67), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
+V + G PN +GKS+ LN L GE
Sbjct: 217 KVVIAGRPN-VGKSSLLNALLGE 238
Score = 29.3 bits (67), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
+V + G PN +GKS+ LN L GE
Sbjct: 217 KVVIAGRPN-VGKSSLLNALLGE 238
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 29.5 bits (67), Expect = 3.2
Identities = 11/64 (17%), Positives = 32/64 (50%)
Query: 91 TLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150
KK+ + K+ +E + ++K+ K + +E+ + + + +E+ +K+++
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Query: 151 DEPK 154
+E K
Sbjct: 470 EEKK 473
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 28.9 bits (65), Expect = 3.2
Identities = 13/70 (18%), Positives = 36/70 (51%)
Query: 94 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEP 153
KK + K+ ++ E++ RE + + K + ER+ + +E+ +K+ +++ +
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65
Query: 154 KELLEKPREY 163
++ ++ EY
Sbjct: 66 EQARKEQEEY 75
Score = 27.4 bits (61), Expect = 8.7
Identities = 12/68 (17%), Positives = 33/68 (48%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158
++++E +E + K++ E + +E+ + K +E+ RK ++ E +E +
Sbjct: 18 RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Query: 159 KPREYIVK 166
++V+
Sbjct: 78 LKSSFVVE 85
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 207 SRVALVGPNGIGKSTF 222
S V LVG +G GKSTF
Sbjct: 9 SLVVLVGASGSGKSTF 24
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 250 SRVALVGPNGIGKSTF 265
S V LVG +G GKSTF
Sbjct: 9 SLVVLVGASGSGKSTF 24
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 29.1 bits (66), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
VA++G +GKST LN L G+
Sbjct: 8 FVAIIGRPNVGKSTLLNALVGQ 29
Score = 29.1 bits (66), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
VA++G +GKST LN L G+
Sbjct: 8 FVAIIGRPNVGKSTLLNALVGQ 29
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.1 bits (63), Expect = 3.4
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 91 TLFKKMYVQKRKELTKEYELQE--------KQIREMKSQGMSKEKAERQHSHKALKEQAR 142
T F K Q+RK+ +E + +E K+IRE + Q + K+ ER+ +ALK
Sbjct: 25 TGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERK---EALKLLEE 81
Query: 143 KRVQKDDDDEPKELLEKPREYIVKFRFPNPP 173
+ DD+++ + + E FP P
Sbjct: 82 ---ENDDEEDAETEDTEDVEDDEWEGFPEPT 109
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 28.3 bits (64), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
R+ + GP G+GK+T + + L KS +++G F
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELL--------KSEGVKVGGF 33
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 28.8 bits (64), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
E ++ ++G G+GK+T LN L G+ P
Sbjct: 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP 36
Score = 28.8 bits (64), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGE 279
E ++ ++G G+GK+T LN L G+ P
Sbjct: 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP 35
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.3 bits (66), Expect = 3.7
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 100 KRKELTKEYELQEKQIREMKSQGMSKEKAERQ--HSHKALKEQ-----ARKRVQKDDDDE 152
+ K + KE E + E++ + E A R LK++ A+ R + +E
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
Query: 153 PKELLEKPRE 162
+ +EK R+
Sbjct: 908 LEAQIEKKRK 917
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 29.1 bits (66), Expect = 3.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 223 LNLLKGEL-----TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
L L EL T +GK+L E GL +V ++G +GKS+ LN L G
Sbjct: 194 LEELIAELDELLATAKQGKILRE----GL----KVVIIGRPNVGKSSLLNALLGR 240
Score = 28.3 bits (64), Expect = 6.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
+V ++G +GKS+ LN L G
Sbjct: 219 KVVIIGRPNVGKSSLLNALLGR 240
>gnl|CDD|221726 pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of
this family belong to the PD-(D/E)XK nuclease
superfamily.
Length = 201
Score = 28.6 bits (64), Expect = 3.7
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 134 HKALKEQARKRVQKDDDDEPKELLEKPREYIVKFR-----FPNPPYLPPPVLGLHDVTFG 188
H L+E + D E +EL E+ + + L +L L +
Sbjct: 43 HAVLEEFYEGLPEDDLLAEDEELEEELEAALERLEEFLESESRESLLSLAILALAEELKR 102
Query: 189 YPGGKVLLEKVNFGLDMESRVALVG 213
G V +E + F L+++ V L G
Sbjct: 103 SGGEPVAVE-LPFELELDEGVRLRG 126
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 28.8 bits (65), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ + G +G GK+T LLK L KV+L
Sbjct: 6 IVIEGIDGAGKTTQAELLKERLEERGIKVVL 36
>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related
GTPases. These proteins are found in bacteria,
eukaryotes, and archaea. They all exhibit a circular
permutation of the GTPase signature motifs so that the
order of the conserved G box motifs is G4-G5-G1-G2-G3,
with G4 and G5 being permuted from the C-terminal region
of proteins in the Ras superfamily to the N-terminus of
YlqF-related GTPases.
Length = 146
Score = 28.1 bits (63), Expect = 3.8
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 222 FLNLLKGELTPNKGKVLLEKVNFGLDM-ESRVALVGPNGIGKSTFLNLLKGEL 273
F++ G+ + ++ RV +VG +GKS+F+N L +
Sbjct: 63 FISATNGQGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKF 115
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.1 bits (65), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 103 ELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRV 145
+L KE ++ + ++ M K+K Q K LK +A RV
Sbjct: 452 QLKKENDMLQTKLNSM-VSAKQKDKQSMQSMEKRLKSEADSRV 493
>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional.
Length = 341
Score = 29.1 bits (66), Expect = 4.0
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM----ESRVALVGPNGI 260
ME ++AL+G G+G+ LL K + L ++ L + +S + + P+G+
Sbjct: 1 MEMKIALIGFGGVGQG-VAELLA-----EKREYLKKRYGLDLKVVAIADSSGSAIDPDGL 54
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 28.4 bits (64), Expect = 4.2
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 252 VALVGPNGIGKSTFLNLLKGE--L---------TPNKGELRKSPRLRIGKFDQHSGE 297
+A+VG GKS+ LN L G L P L + P G +
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKD 57
Score = 27.6 bits (62), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
+A+VG GKS+ LN L G
Sbjct: 1 IAVVGDQSAGKSSVLNALLGR 21
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 28.4 bits (63), Expect = 4.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
R+A VG G GK+T N L+G N RK+ + +F+ DTP EY
Sbjct: 3 RIAFVGAVGAGKTTLFNALQG----NYTLARKTQAV---EFNDKGD-----IDTPGEYF 49
Score = 27.6 bits (61), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELT 231
R+A VG G GK+T N L+G T
Sbjct: 3 RIAFVGAVGAGKTTLFNALQGNYT 26
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 29.0 bits (65), Expect = 4.4
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKA-----LKEQARKRVQKDDDDEP 153
++ EL + L ++I E++ Q +KA ++ K+ LK + + +++ E
Sbjct: 495 RRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQ--LHEA 552
Query: 154 KELLEKPREYI 164
E L+K RE I
Sbjct: 553 NEELQKKREQI 563
>gnl|CDD|187848 cd09717, Cas7_I, CRISPR/Cas system-associated RAMP superfamily
protein Cas7. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas7 is a RAMP superfamily protein; Subunit of the
Cascade complex; also known as Csp1 family.
Length = 292
Score = 28.6 bits (63), Expect = 4.5
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 70 NICTDIIHLDMKKLFYYKGNFTL----FKKMYVQKRKELTKEYELQEKQIREMKSQGMSK 125
N DI + + K F YK L FK + ++K K + + + + +Q +
Sbjct: 145 NFFLDITSVGVSKSFVYKDGLNLGTKYFKHITDDEKKRRVKLFLEATRIMNDYANQARNA 204
Query: 126 EKAERQH---SHKALKEQARKRVQKDDDDEPKELLEKPRE 162
E + + R + E ++++ +
Sbjct: 205 VCGEPEKVLIVFDDRLSRKACRYYTVGEKEQANIIKELDQ 244
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase is
also found in Gram-positive bacteria, archaea, and the
roundworm C. elegans. It may have a more general, but
still unknown function. Mutations have also been found
that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase activity
of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein interactions].
Length = 300
Score = 28.6 bits (64), Expect = 4.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
+P K LL+++ RV + G G GKST L L EL
Sbjct: 17 HPEAKELLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 28.3 bits (63), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 213 GPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
G NG GKS+ L ++ G + P+ G + + N
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCN 63
Score = 27.5 bits (61), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 256 GPNGIGKSTFLNLLKGELTPNKGEL 280
G NG GKS+ L ++ G + P+ G +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNI 57
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 27.4 bits (61), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPNKGE 279
+V ++G G GKS+ L+ L+ GE P E
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLE 30
Score = 27.0 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPNK 234
+V ++G G GKS+ L+ L+ GE P
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEP 28
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 29.0 bits (65), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 14 RIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
R R+++A L P+++ +DEPT+ LD A
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras
GTPases. RGK subfamily. The RGK (Rem, Rem2, Rad,
Gem/Kir) subfamily of Ras GTPases are expressed in a
tissue-specific manner and are dynamically regulated by
transcriptional and posttranscriptional mechanisms in
response to environmental cues. RGK proteins bind to the
beta subunit of L-type calcium channels, causing
functional down-regulation of these voltage-dependent
calcium channels, and either termination of
calcium-dependent secretion or modulation of electrical
conduction and contractile function. Inhibition of
L-type calcium channels by Rem2 may provide a mechanism
for modulating calcium-triggered exocytosis in
hormone-secreting cells, and has been proposed to
influence the secretion of insulin in pancreatic beta
cells. RGK proteins also interact with and inhibit the
Rho/Rho kinase pathway to modulate remodeling of the
cytoskeleton. Two characteristics of RGK proteins cited
in the literature are N-terminal and C-terminal
extensions beyond the GTPase domain typical of Ras
superfamily members. The N-terminal extension is not
conserved among family members; the C-terminal extension
is reported to be conserved among the family and lack
the CaaX prenylation motif typical of
membrane-associated Ras proteins. However, a putative
CaaX motif has been identified in the alignment of the
C-terminal residues of this CD.
Length = 219
Score = 28.5 bits (64), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
RV L+G +G+GKS+ N+ +
Sbjct: 2 RVVLLGDSGVGKSSLANIFTAGV 24
Score = 28.5 bits (64), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
RV L+G +G+GKS+ N+ +
Sbjct: 2 RVVLLGDSGVGKSSLANIFTAGV 24
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.9 bits (65), Expect = 4.9
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 111 QEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 169
+E ++ S+ + K E + E+ + + D P+EL+++ +EY K +
Sbjct: 884 EENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional.
Length = 405
Score = 28.8 bits (64), Expect = 5.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 18 SLARALFLEPTLLLLDEPTNHL----DLNAVI 45
SLA AL P L+L++ P+N L DL VI
Sbjct: 137 SLADALAQSPKLVLIETPSNPLLRITDLRFVI 168
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 28.7 bits (65), Expect = 5.4
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 103 ELTKEYELQEKQIREMKSQGMSKEKAE---RQHSHKALKEQ--------ARKRVQKDDDD 151
+LT E+ + ++ +GM +E+A R+ + KA ++ A +RV K +
Sbjct: 353 DLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSE 412
Query: 152 EPKELLEKPREYI 164
E L P Y+
Sbjct: 413 EELLELLDPANYL 425
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 27.6 bits (62), Expect = 5.8
Identities = 16/109 (14%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 73 TDIIHLDMKKLF----YYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMS---- 124
I +D++K+ K +K + + + EL K+ + +K+ ++++ Q +
Sbjct: 16 AKIGVVDVQKVLSESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEE 75
Query: 125 ------KEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKF 167
+E ++Q + ++ A++ +Q+ + + + +K + I +
Sbjct: 76 ARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQPIYDKIDKAIKEV 124
>gnl|CDD|227254 COG4917, EutP, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 148
Score = 27.5 bits (61), Expect = 5.9
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELT-PNKGE-LRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
R+A VG G GK+T L G T K + + + + I DTP EY
Sbjct: 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGDI--------------DTPGEY 48
Query: 309 L 309
Sbjct: 49 F 49
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 27.7 bits (62), Expect = 5.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 99 QKRKELTKEYELQEKQIR----------EMKSQGMSKEK-AERQHSHKALKEQARKRVQK 147
+ ++L +YE Q R E ++ ++ E AE Q +A KE+AR+ +++
Sbjct: 53 AEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQ 112
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.4 bits (64), Expect = 5.9
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 93 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQK 147
K ++R+E +E + ++K +E + ++K E Q + L+E+ RK+ +
Sbjct: 272 ILKAAEEERQEEAQEKKEEKK--KEEREAKLAKLSPEEQ---RKLEEKERKKQAR 321
>gnl|CDD|106194 PRK13232, nifH, nitrogenase reductase; Reviewed.
Length = 273
Score = 28.4 bits (63), Expect = 6.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 267
++A+ G GIGKST L L+ K+LL G D ++ + G+ + T L+
Sbjct: 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILL----VGCDPKADSTRMLLGGLNQKTVLD 58
Query: 268 LLKGE 272
L+ E
Sbjct: 59 TLRSE 63
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 6.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+ L GP G GK+T + EL L
Sbjct: 22 LLLYGPPGTGKTTLARAIANELFRPGAPFL 51
>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members [Protein synthesis, Other].
Length = 276
Score = 28.2 bits (64), Expect = 6.2
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 208 RVALVG-PNGIGKSTFLNLLKG 228
R +VG PN +GKST +N L G
Sbjct: 120 RAMIVGIPN-VGKSTLINRLAG 140
Score = 28.2 bits (64), Expect = 6.2
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 251 RVALVG-PNGIGKSTFLNLLKG 271
R +VG PN +GKST +N L G
Sbjct: 120 RAMIVGIPN-VGKSTLINRLAG 140
>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only].
Length = 365
Score = 28.4 bits (64), Expect = 6.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 207 SRVALVGPNGIGKSTFLNLLKG 228
+ VALVG +GKST LN L
Sbjct: 64 ATVALVGFPSVGKSTLLNKLTN 85
Score = 28.4 bits (64), Expect = 6.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 250 SRVALVGPNGIGKSTFLNLLKG 271
+ VALVG +GKST LN L
Sbjct: 64 ATVALVGFPSVGKSTLLNKLTN 85
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 27.8 bits (62), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 210 ALVGPNGIGKSTFLNLLKGE 229
+VG G+GKS+ LN L G
Sbjct: 1 VVVGRGGVGKSSLLNALLGG 20
Score = 27.8 bits (62), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 253 ALVGPNGIGKSTFLNLLKGE 272
+VG G+GKS+ LN L G
Sbjct: 1 VVVGRGGVGKSSLLNALLGG 20
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 28.3 bits (63), Expect = 6.8
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 68 LNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
+ + +I ++KL G+ +K +R+EL L+ E
Sbjct: 419 MERLRNVLIQAQLEKLKMKLGHLKELEKSTSLERQELDANLLLRRLNAEEKLFAI 473
>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal.
Miro1 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the N-terminal
GTPase domain of Miro proteins. These atypical Rho
GTPases have roles in mitochondrial homeostasis and
apoptosis. Most Rho proteins contain a lipid
modification site at the C-terminus; however, Miro is
one of few Rho subfamilies that lack this feature.
Length = 168
Score = 27.7 bits (62), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPNKGKVL 238
R+ L+G G+GKS+ + L+ E N +VL
Sbjct: 4 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL 35
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 28.4 bits (64), Expect = 7.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
VALVG GKST N L G +L
Sbjct: 194 LVALVGYTNAGKSTLFNALTGADVYVADQL 223
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 28.1 bits (63), Expect = 7.0
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 93 FKKMYVQKRKELTKEYE-LQEKQIREMKS----QGMSKEKAERQHSHKALKEQARKRVQK 147
+K+ +Q +E +E+E E+ I E K+ +G K + E + L EQ K ++K
Sbjct: 94 IEKLQMQIERE-QEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEK 152
Query: 148 DDDDEPKELLEKPREYIV 165
+ +E+LE E IV
Sbjct: 153 -LIKKREEILESSEEEIV 169
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 28.4 bits (63), Expect = 7.1
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 117 EMKSQGMSKEKAERQHSHKALKEQARKR 144
E K Q KEK RQH KA KEQA +R
Sbjct: 387 EQKRQR-RKEKFWRQHCRKARKEQAERR 413
>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 27.6 bits (62), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 201 FGLDMESRVALVGPNGIGKSTFLNLLKGE 229
FG + E R+ ++G + GK+T L LK
Sbjct: 9 FGWNKEMRILILGLDNAGKTTILYKLKLG 37
Score = 27.6 bits (62), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE 272
FG + E R+ ++G + GK+T L LK
Sbjct: 9 FGWNKEMRILILGLDNAGKTTILYKLKLG 37
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 27.8 bits (62), Expect = 7.5
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 93 FKKMYVQKRKELTKE-YE--LQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDD 149
++ + R+ L KE YE ++K ++ Q K K E S + + K +
Sbjct: 118 KEREEAELRQRLAKEKYEEWCRQKA-QQAAKQRTPKHKKEAAESASSSLSGSAKPERNVS 176
Query: 150 DDEPKELLEK 159
+E K+ L++
Sbjct: 177 QEEAKKRLQE 186
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 27.5 bits (61), Expect = 7.5
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 103 ELTKEYELQEKQ--IREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKP 160
ELT+E +LQE Q +++++ ++ E + S LK+ A +++ E
Sbjct: 49 ELTQELKLQELQDSLKKVEKASLTNLSPELKASVDELKQAAES-MKRSYAANDPEKASDE 107
Query: 161 REYI 164
I
Sbjct: 108 AHTI 111
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 28.0 bits (63), Expect = 7.5
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 254 LVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRI 288
+VG +G+GK+T +N L +L P +G S +++
Sbjct: 9 VVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKK 44
Score = 27.6 bits (62), Expect = 9.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 211 LVGPNGIGKSTFLNLL 226
+VG +G+GK+T +N L
Sbjct: 9 VVGESGLGKTTLINTL 24
>gnl|CDD|188316 TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic
binding protein. Partial phylogenetic profiling
(PMID:16930487) vs. the genome property of glycine
betaine biosynthesis from choline consistently reveals a
member of this ABC transporter periplasmic binding
protein as the best match, save for the betaine
biosynthesis enzymes themselves. Genomes often carry
several paralogs, one encoded together with the permease
and ATP-binding components and another encoded next to a
choline-sulfatase gene, suggesting that different
members of this protein family interact with shared
components and give some flexibility in substrate. Of
two members from Sinorhizobium meliloti 1021, one
designated ChoX has been shown experimentally to bind
choline (though not various related compounds such as
betaine) and to be required for about 60 % of choline
uptake. Members of this protein have an invariant Cys
residue near the N-terminus and likely are lipoproteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 290
Score = 28.0 bits (63), Expect = 7.6
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 213 GPNGIGKSTFLNLLKGELT--PNKGKVLLEKVNFGLDMESRV 252
GPN G + + N KG PN GK LL + F LDME+++
Sbjct: 201 GPNYGGATVYTNTRKGYAAECPNVGK-LLTNLTFTLDMENQL 241
>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B. Escherichia
coli has an iron(II) transport system (feo) which may
make an important contribution to the iron supply of the
cell under anaerobic conditions. FeoB has been
identified as part of this transport system. FeoB is a
large 700-800 amino acid integral membrane protein. The
N terminus contains a P-loop motif suggesting that iron
transport may be ATP dependent.
Length = 190
Score = 27.5 bits (62), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 208 RVALVG-PNGIGKSTFLNLLKG 228
+ALVG PN +GK+T N L G
Sbjct: 2 TIALVGNPN-VGKTTLFNALTG 22
Score = 27.5 bits (62), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 251 RVALVG-PNGIGKSTFLNLLKG 271
+ALVG PN +GK+T N L G
Sbjct: 2 TIALVGNPN-VGKTTLFNALTG 22
>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog.
The MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 216
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 203 LDMESRVALV-GPNGIGKSTFL 223
LD E ++ L+ GPN GKST+L
Sbjct: 26 LDPERQILLITGPNMAGKSTYL 47
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 246 LDMESRVALV-GPNGIGKSTFL 266
LD E ++ L+ GPN GKST+L
Sbjct: 26 LDPERQILLITGPNMAGKSTYL 47
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 28.0 bits (63), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGEL 230
R+AL+G G GKST +L L
Sbjct: 133 RRRIALIGLRGAGKSTLGRMLAARL 157
Score = 28.0 bits (63), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGEL 273
R+AL+G G GKST +L L
Sbjct: 133 RRRIALIGLRGAGKSTLGRMLAARL 157
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 28.2 bits (63), Expect = 7.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 209 VALVGPNGIGKSTFLNLL 226
+ +VGP+G GKST L LL
Sbjct: 4 MLIVGPSGSGKSTLLKLL 21
Score = 28.2 bits (63), Expect = 7.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 252 VALVGPNGIGKSTFLNLL 269
+ +VGP+G GKST L LL
Sbjct: 4 MLIVGPSGSGKSTLLKLL 21
>gnl|CDD|227832 COG5545, COG5545, Predicted P-loop ATPase and inactivated
derivatives [General function prediction only].
Length = 517
Score = 28.0 bits (62), Expect = 8.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
KV+F L L GP G KSTFL+ L G
Sbjct: 200 KVDFMLV------LEGPQGSHKSTFLSELFGT 225
Score = 28.0 bits (62), Expect = 8.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
KV+F L L GP G KSTFL+ L G
Sbjct: 200 KVDFMLV------LEGPQGSHKSTFLSELFGT 225
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 28.2 bits (62), Expect = 8.2
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 100 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPK--ELL 157
K E K+ E +K+ E K ++KA +A + + + ++K + +E K E L
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 158 EKPRE 162
+K E
Sbjct: 1722 KKAEE 1726
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 27.7 bits (62), Expect = 8.3
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 23/126 (18%)
Query: 50 YLQTWKK----TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 105
+W T + + + I K+ Q RK+
Sbjct: 55 LGTSWNSLREETESAATVHEELSEKLSQLIREP-----------LEKVKEDKEQARKKEL 103
Query: 106 KEYELQEKQIREMKSQGMSKEKAE-RQHSHKALKEQA------RKRVQKDDDDEPKELLE 158
E E +K+++E+ ++ K E R+ K Q+ ++Q + + E E LE
Sbjct: 104 AEGEKLKKKLQELWAKLAKKADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREE-ERLE 162
Query: 159 KPREYI 164
++ +
Sbjct: 163 ILKDNL 168
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 27.7 bits (61), Expect = 8.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
V+L+K +F + + ++ G GK+T LL G P++G+
Sbjct: 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 27.7 bits (62), Expect = 8.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAE--------RQHSHKALKEQARKRVQK--D 148
+ K++ + YE +EKQ K +S K E R+ ++ E+A++R+ +
Sbjct: 31 EAEKKIEEIYEKKEKQAEMEKQIIISNAKNEARLKVLNAREELLDSVFEEAKERLANLSE 90
Query: 149 DDDEPKELLEK 159
D DE K+LL+
Sbjct: 91 DKDEYKDLLKD 101
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 28.1 bits (63), Expect = 8.8
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 71 ICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAER 130
I DI+ K+ + + + + ELT E+ + + +GM +E+A
Sbjct: 324 ILADIMLKTTLKVV---KKLVVNPEN-ILRNLELTLGLIASERVLIALVERGMGREEA-- 377
Query: 131 QHSHKALKEQARKRVQKDDDDEPKELLEKPR 161
++ ++E A + D+ D + LL R
Sbjct: 378 ---YEIVRELAMGAAEVDEPDLLEFLLADER 405
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 27.6 bits (61), Expect = 9.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ 52
FS G R LARA + ++L++DE T +D+ +N LQ
Sbjct: 157 FSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT----ENILQ 196
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.0 bits (62), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
LLE++ + + LVG G GK+T + L +L
Sbjct: 453 LLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKL 488
>gnl|CDD|222926 PHA02745, PHA02745, hypothetical protein; Provisional.
Length = 265
Score = 27.6 bits (61), Expect = 9.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 125 KEKAERQHSHKALKEQARKRVQKD-DDDEPKELLEKPREYIVKFRFPNPPYLP 176
+E E + + ++++ D+ E + L K R+ I KF P P Y P
Sbjct: 83 QEVDEFRGLNAKIRDKVLPIEDNKHDNSETRNPLNKIRQQIRKFTLP-PEYDP 134
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 210 ALVGPNGIGKSTFLNLLKGE 229
A+ G +GKS+ LN L G+
Sbjct: 1 AIFGRPNVGKSSLLNALLGQ 20
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 253 ALVGPNGIGKSTFLNLLKGE 272
A+ G +GKS+ LN L G+
Sbjct: 1 AIFGRPNVGKSSLLNALLGQ 20
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 27.8 bits (62), Expect = 9.5
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 75 IIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREM----KSQGMSKEKAE- 129
I+ + + + + ++ +EL + + +Q++E+ S G+S +A+
Sbjct: 169 IVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADL 228
Query: 130 ----RQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
+H AL R V ++D EL+ PR + P PP PPP
Sbjct: 229 FAVRAAKAHAAL--HGRTEVTEEDLKLAVELVLLPRATRLPEPEPQPPPPPPP 279
>gnl|CDD|234496 TIGR04198, paramyx_RNAcap, mRNA capping enzyme, paramyxovirus
family. This model represents a common C-terminal
region shared by paramyxovirus-like RNA-dependent RNA
polymerases (see model pfam00946). Polymerase proteins
described by these two models are often called L protein
(large polymerase protein). Capping of mRNA requires RNA
triphosphatase and guanylyl transferase activities,
demonstrated for the rinderpest virus L protein and at
least partially localized to the region of this model.
Length = 893
Score = 27.8 bits (62), Expect = 9.6
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 29 LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM 80
L L T D +W T T + + + D+IH DM
Sbjct: 579 LAGLGSGTGRCDNFEDLWNGPSDLTDITTWDYFNFILNQVPLDSLDLIHCDM 630
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 27.4 bits (62), Expect = 9.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 198 KVNFGLDMESRVALVGPNGIGKS 220
+ F + A+VGPNG GKS
Sbjct: 17 TIPFPPGL---TAIVGPNGSGKS 36
Score = 27.4 bits (62), Expect = 9.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 241 KVNFGLDMESRVALVGPNGIGKS 263
+ F + A+VGPNG GKS
Sbjct: 17 TIPFPPGL---TAIVGPNGSGKS 36
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 26.8 bits (60), Expect = 9.9
Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 75 IIHLDMKKLF----YYKGNFTLFKKMYVQKRKEL-TKEYELQEKQIREMKSQGMSKEKAE 129
I +D++K+ K +K + +++ EL E ELQ+ + +++ + +A
Sbjct: 1 IGVVDVQKILQESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLK-EKLQKDAATLSEAA 59
Query: 130 RQHSHKALKE----------QARKRVQKDDDDEPKELLEKPREYIVKFR 168
R+ K L++ + ++ +QK +E +++L+K + I +
Sbjct: 60 REKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKINKAIKEVA 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,724,392
Number of extensions: 1872969
Number of successful extensions: 4928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4658
Number of HSP's successfully gapped: 1392
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)