RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2684
(356 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 237 bits (606), Expect = 7e-71
Identities = 97/361 (26%), Positives = 136/361 (37%), Gaps = 106/361 (29%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
M SGGW+++++LARA+ +LLLDEPTNHLD V WL NYL T T +
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIT 600
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
+SHD FL+N+C II+ + KL YKGNFT F
Sbjct: 601 ISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV-------------------------- 634
Query: 121 QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYL----- 175
K+ KA +E + ++ F+FP P YL
Sbjct: 635 ----KKCPAA----KAYEELSNTDLE--------------------FKFPEPGYLEGVKT 666
Query: 176 -PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
++ + ++ F YPG
Sbjct: 667 KQKAIVKVTNMEFQYPGTS----------------------------------------- 685
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
K + +NF + SR+A++GPNG GKST +N+L GEL P GE+ RI QH
Sbjct: 686 -KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744
Query: 295 SGEHL--FPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
+ H+ D TP EY+ F E R I + G +
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 351 L 351
+
Sbjct: 805 I 805
Score = 137 bits (345), Expect = 1e-35
Identities = 21/91 (23%), Positives = 49/91 (53%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
+ + SGG ++++ LA + P L++LDEPTN+LD +++ L L+ ++ +++
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVII 953
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 91
++H F N+ ++ + ++ N+
Sbjct: 954 ITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984
Score = 76.2 bits (187), Expect = 3e-15
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
K+LL K L R + GPNG GKST + + R + +H
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---FPTQEECRTV-YVEH 502
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
+ D + +++ + E + +L FG +PI LSGG K ++ALA
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARA 562
Query: 355 TL 356
L
Sbjct: 563 VL 564
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 125 bits (315), Expect = 7e-32
Identities = 73/356 (20%), Positives = 124/356 (34%), Gaps = 101/356 (28%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLL 59
++ + SGG RV++A AL + DEP+++LD+ V + L K +L
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 60 VVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
VV HD + L+ + D+IH+ ++ G + +F + K R
Sbjct: 283 VVEHDLAVLDYLS-DVIHV----VYGEPGVYGIF----------------SKPKGTRNGI 321
Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 179
++ + + E R R + + E ++ RE +V++ Y
Sbjct: 322 NEFLQGYLKD---------ENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY----- 367
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
G LE + + +VGPNGIGK+TF+ +L G P +GKV
Sbjct: 368 ------------GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415
Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
+ L + Q+
Sbjct: 416 D---------------------------------------------LTVAYKPQYI--KA 428
Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ T E L K+ + + + L G+ DLSGG+ RVA+A
Sbjct: 429 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-EDLSGGELQRVAIA 483
Score = 83.1 bits (206), Expect = 1e-17
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKK 56
+ +++ ++ SGG RV++A L + + LLDEP+ +LD L + + ++ +K
Sbjct: 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 57 TLLVVSHDQSFLNNICTDIIHLD 79
T LVV HD ++ + +I +
Sbjct: 524 TALVVEHDVLMIDYVSDRLIVFE 546
Score = 61.9 bits (151), Expect = 1e-10
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
+ + V +VGPNG GK+T + +L G+L PN E S I F +
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 296 GEHLFP----------------DDTP---CEYLMKLFNLPYEKSR--RQLGMFGLPSYAH 334
++ F D P + +L E + + L +
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELEN-VL 222
Query: 335 TIPIRDLSGGQKARVALA 352
+ LSGG+ RVA+A
Sbjct: 223 DRELHQLSGGELQRVAIA 240
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 113 bits (284), Expect = 7e-28
Identities = 64/359 (17%), Positives = 109/359 (30%), Gaps = 103/359 (28%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLV 60
K SGG R+ +A +L E + + D+P+++LD+ + + ++ K ++V
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
Query: 61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
V HD L+ + I + + Y G +
Sbjct: 193 VDHDLIVLDYLTDLIHIIYGESSVY--GRVS----------------------------- 221
Query: 121 QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVL 180
K A R + LK K DE K +L++ + +
Sbjct: 222 ----KSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWT---- 273
Query: 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
G L N + ++GPNGIGK+TF +L GE+T ++G V E
Sbjct: 274 -----KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328
Query: 241 KVNFG-------LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
K + + V +
Sbjct: 329 KQILSYKPQRIFPNYDGTVQQY-----------------------------------LEN 353
Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
S + L E + K NL + DLSGG+ ++ +A
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN---------------VNDLSGGELQKLYIA 397
Score = 78.9 bits (195), Expect = 3e-16
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN--AVIW--LDNYLQTWKK 56
+ E + + SGG ++ +A L E L +LD+P+++LD+ ++ + + K
Sbjct: 378 LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 57 TLLVVSHDQSFLNNICTDIIHLD 79
++ HD S + I II
Sbjct: 438 VTFIIDHDLSIHDYIADRIIVFK 460
Score = 56.6 bits (137), Expect = 4e-09
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 36/144 (25%)
Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----------L 280
TP + + ++G NG+GK+T L +L GE+ PN G+ L
Sbjct: 21 TPKNNTI--------------LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVL 66
Query: 281 RKSPRLRIGKFDQHSGEHLFP-------DDTPCEYLMKLFNL---PYEKSRRQLGMFGLP 330
++ I + + + + ++L N ++ ++ + L
Sbjct: 67 KRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL 126
Query: 331 SYAHTI--PIRDLSGGQKARVALA 352
+ + LSGG R+ +A
Sbjct: 127 NMTNLWNKDANILSGGGLQRLLVA 150
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 97.8 bits (244), Expect = 1e-22
Identities = 51/353 (14%), Positives = 106/353 (30%), Gaps = 92/353 (26%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
++ ++ SGG R ++ + E + + DEP+++LD+ + +++ K ++
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 60 VVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
V HD S L+ + + + Y G TL + +E + ++
Sbjct: 276 CVEHDLSVLDYLSDFVCIIYGVPSVY--GVVTLPASV-----REGINIFLDGHIPAENLR 328
Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 179
+ +Q D ++L +
Sbjct: 329 F--------------------RTEALQFRIADATEDLQNDSASRAFSYPS---------- 358
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
G +L + ++G NG GK+T + LL G L P++G+ +
Sbjct: 359 -------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP 411
Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
K + P+ +I + L
Sbjct: 412 -------------------------------------KLNVSMKPQ-KIAPKFPGTVRQL 433
Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
F ++L + + + + LSGG+ RVA+
Sbjct: 434 FFKKIRGQFLNP------QFQTDVVKPLRIDDIIDQEV-QHLSGGELQRVAIV 479
Score = 75.8 bits (187), Expect = 3e-15
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVS 62
+ SGG RV++ AL + + L+DEP+ +LD + + ++ KKT +V
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525
Query: 63 HDQSFLNNICTDIIHLDMK--KLFYYKGNFTLFKKM 96
HD + +I + K + + +L
Sbjct: 526 HDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561
Score = 60.8 bits (148), Expect = 2e-10
Identities = 37/178 (20%), Positives = 53/178 (29%), Gaps = 23/178 (12%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
P VT Y L + LVG NGIGKST L +L G+ PN G+
Sbjct: 76 PTNLEAHVTHRYSANSFKL-HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR---LRIGKFDQH 294
+ EL ++ + ++ D
Sbjct: 135 DDP------------------PEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI 176
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
P E L E +R + + L + I LSGG+ R A+
Sbjct: 177 PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-DIEKLSGGELQRFAIG 233
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 96.2 bits (240), Expect = 5e-22
Identities = 73/352 (20%), Positives = 116/352 (32%), Gaps = 103/352 (29%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
SGG RV++A AL T DEP+++LD+ + ++ K++LVV HD
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 65 QSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMS 124
+ L+ + DIIH+ +Y E + + SQ
Sbjct: 218 LAVLDYLS-DIIHV-----------------VY-------------GEPGVYGIFSQPKG 246
Query: 125 KEKAERQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLH 183
+ LK E R R + + E +E RE +V +
Sbjct: 247 TRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYP--------------- 291
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
G LE + + +VGPNGIGK+TF+ +L G P +GK+ +
Sbjct: 292 --RLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--- 346
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
L + Q+ +
Sbjct: 347 ------------------------------------------LTVAYKPQYI--KADYEG 362
Query: 304 TPCEYLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T E L K+ + + L G+ +LSGG+ RVA+A
Sbjct: 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIA 413
Score = 79.3 bits (196), Expect = 2e-16
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVS 62
E SGG RV++A L + + LLDEP+ +LD L + + ++ +KT LVV
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459
Query: 63 HDQSFLNNICTDIIHLD 79
HD ++ + ++ +
Sbjct: 460 HDVLMIDYVSDRLMVFE 476
Score = 48.1 bits (115), Expect = 2e-06
Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 50/182 (27%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN------KGKV 237
D Y G + + V +VGPNG GKST + +L G+L PN
Sbjct: 26 DCVHRY-GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 238 LLEKVNFGLDMES-----RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 292
++ G ++++ + + P + K +++L+ P+ GK
Sbjct: 85 VIRAFR-GNELQNYFEKLKNGEIRP--VVKPQYVDLI--------------PKAVKGKV- 126
Query: 293 QHSGEHLFPDDTP--CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
E L D E ++K L R I+ LSGG+ RVA
Sbjct: 127 ---IELLKKADETGKLEEVVKALELENVLER---------------EIQHLSGGELQRVA 168
Query: 351 LA 352
+A
Sbjct: 169 IA 170
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 83.8 bits (208), Expect = 1e-18
Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 43/194 (22%)
Query: 170 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
P ++ L + GK +L+K+++ + + L G NG GK+T LN+L
Sbjct: 12 GLVPRGSHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70
Query: 230 LTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 289
G V L FG G++ + +R+ IG
Sbjct: 71 EPATSGTVNL----FGKMP----------------------GKVGYSAETVRQ----HIG 100
Query: 290 KFDQHSGEHLFPDDTPCEYLM-------KLFNLPYEKSRRQ----LGMFGLPSYAHTIPI 338
E + + ++ ++ ++ R + L + G+ + A I
Sbjct: 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-YI 159
Query: 339 RDLSGGQKARVALA 352
LS G+K RV +A
Sbjct: 160 GYLSTGEKQRVMIA 173
Score = 62.6 bits (153), Expect = 2e-11
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 1 MQEKSTKEF---SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK- 56
M K+ + S G + RV +ARAL +P +L+LDEP LD A L + L +
Sbjct: 151 MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 57 ----TLLVVSHDQSFLNNICTDIIHLD 79
++ V+H + + I+ L
Sbjct: 211 YPTLAMIYVTHFIEEITANFSKILLLK 237
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 68.7 bits (169), Expect = 1e-13
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L + ++ F Y L +++NF L+ +A++G NG GKST L+LL G P +GK+
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 238 LLEK 241
+ +
Sbjct: 63 EVYQ 66
Score = 59.5 bits (145), Expect = 2e-10
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVI-WLDNYLQTWKKTL 58
++ SGG R + +ARA+ E L+LLDEPT+ LDL V+ L + Q+ T+
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 59 LVVSHD 64
+ +H
Sbjct: 183 VFTTHQ 188
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 69.1 bits (170), Expect = 1e-13
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 49/187 (26%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+L + ++ + Y G L+ +N + A++G NG+GKST G L P+ G++
Sbjct: 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
L + ++ +LR+ IG Q
Sbjct: 66 LFD----NKPIDYS----------------------RKGIMKLRE----SIGIVFQ---- 91
Query: 298 HLFPDD-----TPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
PD+ + + + LP ++ R++ L G+ LS GQ
Sbjct: 92 --DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-LSFGQ 148
Query: 346 KARVALA 352
K RVA+A
Sbjct: 149 KKRVAIA 155
Score = 46.4 bits (111), Expect = 5e-06
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKK 56
+K T S G + RV++A L +EP +L+LDEPT LD + ++ +
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL--VEMQKELGI 195
Query: 57 TLLVVSHDQSFLNNICTDIIHLD 79
T+++ +HD + C ++ +
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMK 218
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 64.5 bits (158), Expect = 3e-12
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 288
K +LE++ ++ + V GPNGIGK+T L + L P KGE+ + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 289 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSG 343
+ + + +YL L+ + K+ L + + +LS
Sbjct: 81 FFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK--KLGELSQ 136
Query: 344 GQKARVALA 352
G RV LA
Sbjct: 137 GTIRRVQLA 145
Score = 59.1 bits (144), Expect = 2e-10
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV--IW--LDNYLQTWKKTL 58
+K E S G RV LA L + + +LD+P +D ++ + + L+ +
Sbjct: 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 59 LVVSHDQSFLNNICTDIIHLD 79
+ + S C +L
Sbjct: 188 ISSREELS----YCDVNENLH 204
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 64.3 bits (157), Expect = 5e-12
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
+ + + S G + V + AL +P ++ LDEP ++D + Y++ + K ++
Sbjct: 121 ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGIL 180
Query: 61 VSHDQ 65
V+H+
Sbjct: 181 VTHEL 185
Score = 58.9 bits (143), Expect = 4e-10
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 221 TFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
N+ + LE +N ++ E +V ++GPNG GK+T L + G L P G +
Sbjct: 3 QLKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNI 60
Query: 281 R------KSPRLRIGKFDQHSGEHLFP----DDTPCEYLMKLFNLPYEKSRRQLGMFGLP 330
+ R I + D +L L + L L
Sbjct: 61 FINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV--YLYEELKGLDRDLFLEMLKALKLG 118
Query: 331 -SYAHTIPIRDLSGGQKARVALA 352
LS GQ V +
Sbjct: 119 EEILRRKL-YKLSAGQSVLVRTS 140
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 59.5 bits (145), Expect = 2e-10
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELR-------KSP---RLRIGKFDQHSGEHLFPDD 303
L+GPNG GK+T L ++ + P+ G + + P R I + +G + +
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNM 103
Query: 304 TPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
EYL + + + GL + S G ++ +A
Sbjct: 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIA 158
Score = 56.0 bits (136), Expect = 3e-09
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLV 60
+S G ++ +ARAL + P L +LDEPT+ LD+ + L+ T+LV
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 61 VSHDQSFLNNICTDII 76
SH+ + +C I
Sbjct: 202 SSHNMLEVEFLCDRIA 217
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 59.1 bits (144), Expect = 2e-10
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 10 SGGWRIRVSLARAL-------FLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLL 59
SGG RV LA + LLLLDEP N LD+ LD L + ++
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIV 187
Query: 60 VVSHDQSFLN 69
+ SHD LN
Sbjct: 188 MSSHD---LN 194
Score = 58.0 bits (141), Expect = 7e-10
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 19/132 (14%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR- 285
L ++ + + LVGPNG GKST L + G +T KG ++ S
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70
Query: 286 --LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---RQLGMFGLPSYAHTIPIRD 340
L Q P TP + + L ++ G L
Sbjct: 71 LALHRAYLSQQ---QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQ 126
Query: 341 LSGGQKARVALA 352
LSGG+ RV LA
Sbjct: 127 LSGGEWQRVRLA 138
Score = 54.5 bits (132), Expect = 9e-09
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
V+ L DV L ++ + + LVGPNG GKST L + G +T KG
Sbjct: 2 SIVMQLQDV-----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGS 55
Query: 237 VLLE 240
+
Sbjct: 56 IQFA 59
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 57.2 bits (139), Expect = 1e-09
Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 73/195 (37%)
Query: 182 LHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +V+ + G K LE V+ ++ + + G G GKST L ++ G + P G V
Sbjct: 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
L + G+ E+R+ IG Q
Sbjct: 65 LYD--------------------GERKKGY-----------EIRR----NIGIAFQ---- 85
Query: 298 HLFPDDTPCEYLMKLF-------------NL--PYEKSRR---QLGMFGLP--SYAHTIP 337
+P+D + F N + + GL S+ +P
Sbjct: 86 --YPED-------QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136
Query: 338 IRDLSGGQKARVALA 352
LSGG+K RVA+A
Sbjct: 137 F-FLSGGEKRRVAIA 150
Score = 47.6 bits (114), Expect = 2e-06
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLL 59
++ SGG + RV++A + EP +L+LDEP LD ++ + +T KT++
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 60 VVSHDQSFLNNICTDIIHLD 79
++SHD + N ++ L+
Sbjct: 193 LISHDIETVINHVDRVVVLE 212
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 56.4 bits (137), Expect = 2e-09
Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 35/187 (18%)
Query: 176 PPPVLGLHDVT--FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233
+L ++ FG L+ V+ ++ ++GPNG GKST +N++ G L +
Sbjct: 4 TMEILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 234 KGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNL-LKGELTP--NKGELRKSPRLRIG 289
+G+V E + + GI + TF E+T N L IG
Sbjct: 61 EGRVYFENKDITNKEPAELYHY----GIVR-TFQTPQPLKEMTVLEN---------LLIG 106
Query: 290 KFDQHSGEHL----FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 345
L + P E M EK+ + L L +LSGGQ
Sbjct: 107 -EICPGESPLNSLFYKKWIPKEEEMV------EKAFKILEFLKLSHLYDR-KAGELSGGQ 158
Query: 346 KARVALA 352
V +
Sbjct: 159 MKLVEIG 165
Score = 49.0 bits (118), Expect = 6e-07
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKKTLLVVSHDQS 66
SGG V + RAL P ++++DEP + + L+ T L++ H
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
Query: 67 FLNNICTDIIHLD 79
+ N + +
Sbjct: 215 IVLNYIDHLYVMF 227
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 55.2 bits (134), Expect = 5e-09
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+L V F Y + +L ++F S +A GP+G GKST +LL+ P G++
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 239 L 239
+
Sbjct: 61 I 61
Score = 42.5 bits (101), Expect = 9e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARA P +L+LDE T LD
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 55.2 bits (134), Expect = 5e-09
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---- 56
+ ++ SGG R RV+LARAL ++P LLLLDEP + +DL L +
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK----TKGVLMEELRFVQR 174
Query: 57 ----TLLVVSHDQ 65
+L V+HD
Sbjct: 175 EFDVPILHVTHDL 187
Score = 46.0 bits (110), Expect = 6e-06
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 31/122 (25%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLR-IGKFDQHSGEHLFPD 302
L+GP G GKS FL L+ G + P++GE+R P R IG Q LFP
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPH 84
Query: 303 DTPCEYLMKLF-NLPY-----------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
+ ++ N+ Y + R G+ P LSGG++ RVA
Sbjct: 85 -------LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQRVA 136
Query: 351 LA 352
LA
Sbjct: 137 LA 138
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 55.3 bits (134), Expect = 9e-09
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--------TLLVV 61
SGG + RV+LARAL P +LL DEP +D + L+T+ + T + V
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVFV 202
Query: 62 SHDQ 65
+HDQ
Sbjct: 203 THDQ 206
Score = 45.7 bits (109), Expect = 1e-05
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IGKFDQHSGEHLFPD 302
V L+GP+G GK+T L L+ G P KG++ P+ R +G Q+ LF
Sbjct: 44 VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA--LFQH 101
Query: 303 DTPCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + + ++ +P + R L L SYA+ P +LSGGQ+ RVALA
Sbjct: 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-HELSGGQQQRVALA 157
Score = 41.1 bits (97), Expect = 3e-04
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
V YPGG + V+ + V L+GP+G GK+T L L+ G P KG V +
Sbjct: 17 FVGVEKIYPGGARSVRGVS--FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 240 E 240
Sbjct: 75 G 75
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 54.0 bits (131), Expect = 1e-08
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
++ F Y P V+L+ +N + + +VG +G GKST L++ P G+VL+
Sbjct: 10 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68
Score = 44.4 bits (106), Expect = 2e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARAL P +L+ DE T+ LD
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALD 177
Score = 38.6 bits (91), Expect = 0.002
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 226 LKGELT--------PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
++T V+L+ +N + + +VG +G GKST L+
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
Score = 28.2 bits (64), Expect = 3.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 341 LSGGQKARVALA 352
LSGGQ+ R+A+A
Sbjct: 146 LSGGQRQRIAIA 157
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 55.3 bits (134), Expect = 2e-08
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVA 210
+L+ +E + G +VTF YPG +V L +N + VA
Sbjct: 320 AILDSEQEK------DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 373
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
LVG +G GKST +L+ ++G +L+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILM 402
Score = 41.8 bits (99), Expect = 2e-04
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 223 LNLLKGELT--------PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 274
++ G+L P + L +N + VALVG +G GKST +L+
Sbjct: 335 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 275 PNKGEL-----------RKSPRLRIGKFDQHSGEHLFPDDT 304
++G + S R ++ Q+ HLF +DT
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNV--HLF-NDT 432
Score = 39.5 bits (93), Expect = 0.001
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++ARAL + +L+LDE T+ LD
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 54.9 bits (133), Expect = 2e-08
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 155 ELLEKPREYIVKFRFPNP-PYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGLDMESRVA 210
E+L+ E +P V G +V F Y K +L+ + F + +VA
Sbjct: 332 EILDLEEE------KDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVA 385
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
LVGP G GK+T +NLL ++G++L++ ++
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Query: 229 ELTPNKGKVLLEKVNFG------------LDME--SRVALVGPNGIGKSTFLNLL 269
EL +G++ + V F ++ +VALVGP G GK+T +NLL
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Score = 28.3 bits (64), Expect = 4.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
S G R +++ RA P +L+LDE T+++D
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 53.8 bits (130), Expect = 4e-08
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 169 FPNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
G +V F YP + + + + S ALVGP+G GKST L
Sbjct: 328 NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387
Query: 224 NLLKGELTPNKGKVLLEKVN 243
+LL P G + L+ +
Sbjct: 388 SLLLRLYDPASGTISLDGHD 407
Score = 43.4 bits (103), Expect = 8e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+++ARAL P +LLLDE T+ LD
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALD 515
Score = 40.3 bits (95), Expect = 9e-04
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 16/56 (28%)
Query: 230 LTPNKGKVLLEKVNF------------GLDME----SRVALVGPNGIGKSTFLNLL 269
+G + + V+F + S ALVGP+G GKST L+LL
Sbjct: 335 EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 341 LSGGQKARVALA 352
LSGGQK R+A+A
Sbjct: 484 LSGGQKQRIAIA 495
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 53.7 bits (130), Expect = 5e-08
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGG-KVLLEKVNFGLDMESRVA 210
L++ E N Y V G + DVTF Y G K L V+F + VA
Sbjct: 320 GLMDLETER------DNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373
Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
LVG +G GKST NL + G + L
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICL 402
Score = 42.2 bits (100), Expect = 2e-04
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 29/102 (28%)
Query: 229 ELTPNKGKVLLEKVNFGLDMESR---------------VALVGPNGIGKSTFLNLLKGEL 273
E G+V ++ V F + + VALVG +G GKST NL
Sbjct: 334 EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393
Query: 274 TPNKGEL-----------RKSPRLRIGKFDQHSGEHLFPDDT 304
+ G + + R Q+ HLF +DT
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV--HLF-NDT 432
Score = 39.1 bits (92), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R RV++ARAL + +L+LDE T+ LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 52.2 bits (126), Expect = 7e-08
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
+V F Y G+ L+ V+F + +ALVGP+G GKST L LL
Sbjct: 58 NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Score = 43.4 bits (103), Expect = 6e-05
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 229 ELTPNKGKVLLEKVNFGLDME--------------SRVALVGPNGIGKSTFLNLL 269
L KG++ E V+F +ALVGP+G GKST L LL
Sbjct: 46 PLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Score = 39.9 bits (94), Expect = 7e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RV++AR + P ++LLDE T+ LD
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALD 222
Score = 28.3 bits (64), Expect = 4.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 341 LSGGQKARVALA 352
LSGG+K RVA+A
Sbjct: 191 LSGGEKQRVAIA 202
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 51.3 bits (124), Expect = 7e-08
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 51/188 (27%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNKGK 236
+L ++ G ++L + ++ + V+++G +G GKST L +L G L P +GK
Sbjct: 3 EILRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGK 60
Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-KFDQHS 295
V LE G +++ + EL+ LR ++G F H
Sbjct: 61 VFLE----GKEVDY-----------------TNEKELS----LLR---NRKLGFVFQFH- 91
Query: 296 GEHLFPDDTPCEYLMKLFNLP--Y---------EKSRRQLGMFGLPSYAHTIPIRDLSGG 344
+L P+ T E ++ +P E+ L GL P +LSGG
Sbjct: 92 --YLIPELTALENVI----VPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP-YELSGG 144
Query: 345 QKARVALA 352
++ RVA+A
Sbjct: 145 EQQRVAIA 152
Score = 47.1 bits (113), Expect = 2e-06
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTLLVVSHD 64
E SGG + RV++ARAL EP LL DEPT +LD V+ + + ++++V+H+
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
Query: 65 Q 65
+
Sbjct: 200 R 200
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 52.6 bits (127), Expect = 7e-08
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--------TLL 59
E SGG + R +LARAL +P L+LLDEP + LD L ++ + +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAALRANGKSAV 193
Query: 60 VVSHDQ 65
VSHD+
Sbjct: 194 FVSHDR 199
Score = 41.0 bits (97), Expect = 4e-04
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
L + ++ + +L ++ LD + ++G +G GK+T L L G P+ G++
Sbjct: 3 AALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 238 LLEKVNFGLDMESRVALVGPN--GIG 261
L G + S+ + +G
Sbjct: 62 SLS----GKTIFSKNTNLPVRERRLG 83
Score = 40.6 bits (96), Expect = 5e-04
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH-----------LF 300
+ ++G +G GK+T L L G P+ GE+ S + K LF
Sbjct: 33 LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92
Query: 301 PDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
P T Y + + R++ L + G+ A P +LSGGQ+ R ALA
Sbjct: 93 PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-HELSGGQQQRAALA 150
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 51.8 bits (125), Expect = 1e-07
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 170 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224
+ P + G DV+F YP +L+ + F L ALVGPNG GKST
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 225 LLKGELTPNKGKVLLEKVNF-GLDME---SRVALVG 256
LL+ P GKVLL+ D ++VA VG
Sbjct: 64 LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVG 99
Score = 45.6 bits (109), Expect = 1e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN-------AVIWLDNYLQTWKKTLLVVS 62
SGG R V+LARAL +P LL+LD T+ LD L + +T+L+++
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYESPEWASRTVLLIT 214
Query: 63 H 63
Sbjct: 215 Q 215
Score = 37.9 bits (89), Expect = 0.003
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 18/62 (29%)
Query: 226 LKGELTPN--KGKVLLEKVNF------------GLDME----SRVALVGPNGIGKSTFLN 267
L G L P KG V + V+F GL ALVGPNG GKST
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 268 LL 269
LL
Sbjct: 64 LL 65
Score = 29.8 bits (68), Expect = 1.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 341 LSGGQKARVALA 352
LSGGQ+ VALA
Sbjct: 157 LSGGQRQAVALA 168
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 51.4 bits (124), Expect = 1e-07
Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KG-------ELTPNKGELRKSP 284
L+ +N + V ++GP+G GKSTFL NLL +G L L K
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV- 98
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSYAHTI 336
R +G Q +LFP T + K+ P K+ L GL AH
Sbjct: 99 REEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 337 PIRDLSGGQKARVALA 352
P LSGGQ RVA+A
Sbjct: 157 PDS-LSGGQAQRVAIA 171
Score = 42.6 bits (101), Expect = 8e-05
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 15/67 (22%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKK------TLLV 60
SGG RV++ARAL +EP ++L DEPT+ LD + V L K+ T++V
Sbjct: 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV------LSVMKQLANEGMTMVV 214
Query: 61 VSHDQSF 67
V+H+ F
Sbjct: 215 VTHEMGF 221
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 52.7 bits (127), Expect = 1e-07
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 176 PPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
P + G ++ F YP +L+ +N + VALVG +G GKST + L++
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 231 TPNKGKVLLEKVN 243
P G V ++ +
Sbjct: 441 DPLDGMVSIDGQD 453
Score = 50.8 bits (122), Expect = 4e-07
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 37/197 (18%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVVS 62
SGG + R+++ARAL P +LLLDE T+ LD A LD + +T +V++
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA---LDKARE--GRTTIVIA 582
Query: 63 HDQSFLNNICTDII-------------H--LDMKKLFYYKGNFTLFK--KMYVQKRKELT 105
H S + N D+I H L +K Y+K L +
Sbjct: 583 HRLSTVRN--ADVIAGFDGGVIVEQGNHDELMREKGIYFK----LVMTQTAGNEIELGNE 636
Query: 106 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 165
E +M S+ R+ + K++ + + + E + + +
Sbjct: 637 ACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRI 696
Query: 166 KFRFPNPPYLPPPVLGL 182
+ N P V+G+
Sbjct: 697 -LKL-NSTEWPYFVVGI 711
Score = 48.1 bits (115), Expect = 3e-06
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 169 FPNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
+ P + G V F YP +L+ ++ + +ALVG +G GKST +
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 224 NLLKGELTPNKGKVLLEKVNF-GLDME---SRVALVG 256
LL+ P G V L+ L+++ +++ +V
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+++ARAL +P +LLLDE T+ LD
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Score = 41.2 bits (97), Expect = 5e-04
Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 55/165 (33%)
Query: 234 KGKVLLEKVNF------------GLDME----SRVALVGPNGIGKSTFLNLL-------K 270
+G V V F GL +E +ALVG +G GKST + LL
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 271 GELTPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 326
G + + E++ + R ++G Q LF D + E N+ Y + R +
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEP--ILF-DCSIAE------NIAYGDNSRVVSY 1138
Query: 327 --------------F--GLPS-YAHTIPIR--DLSGGQKARVALA 352
F LP Y + + LSGGQK R+A+A
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Score = 37.3 bits (87), Expect = 0.007
Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 75/174 (43%)
Query: 234 KGKVLLEKVNF------------GLDME----SRVALVGPNGIGKSTFLNLLKGELTPNK 277
+G + + ++F GL+++ VALVG +G GKST + L++ P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 278 GELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 326
G + + R IG Q LF T E N+
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEP--VLF-ATTIAE------NI----------R 485
Query: 327 FGLP-------------SYAHTIPIRDL---------------SGGQKARVALA 352
+G + A+ I L SGGQK R+A+A
Sbjct: 486 YGREDVTMDEIEKAVKEANAYDF-IMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 51.4 bits (124), Expect = 1e-07
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--------TLLVV 61
SGG + RV+LARAL P +LLLDEP + LD + T+L +
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPR----TQENAREMLSVLHKKNKLTVLHI 184
Query: 62 SHDQS 66
+HDQ+
Sbjct: 185 THDQT 189
Score = 43.3 bits (103), Expect = 6e-05
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 34/140 (24%)
Query: 235 GKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP 284
L+ ++ L +ES ++GP G GK+ FL L+ G P+ G + SP
Sbjct: 12 KNFSLDNLS--LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP 69
Query: 285 RLR-IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----------EKSRRQLGMFGLPSY 332
I Q+ LFP M + NL + ++ +
Sbjct: 70 EKHDIAFVYQNYS--LFPH-------MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 333 AHTIPIRDLSGGQKARVALA 352
P LSGG++ RVALA
Sbjct: 121 LDRNP-LTLSGGEQQRVALA 139
Score = 34.5 bits (80), Expect = 0.039
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 192 GKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
L+ ++ L +ES ++GP G GK+ FL L+ G P+ G++LL+
Sbjct: 12 KNFSLDNLS--LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 49.9 bits (120), Expect = 3e-07
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 53/143 (37%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S RI Q S
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFS--- 78
Query: 299 LFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI------------PIR 339
++M +F + Y++ R Y I +
Sbjct: 79 ---------WIMPGTIKENIIFGVSYDEYR----------YRSVIKACQLEEDISKFAEK 119
Query: 340 D----------LSGGQKARVALA 352
D LSGGQ+AR++LA
Sbjct: 120 DNIVLGEGGITLSGGQRARISLA 142
Score = 47.9 bits (115), Expect = 1e-06
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ +VT + GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Score = 38.3 bits (90), Expect = 0.002
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVVS 62
SGG R R+SLARA++ + L LLD P +LD + + + KT ++V+
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMA--NKTRILVT 187
Query: 63 HDQSFLNNICTDIIHLD 79
L I+ L
Sbjct: 188 SKMEHLKK-ADKILILH 203
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 51.0 bits (123), Expect = 3e-07
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKV-LLEKVNFGLDME 206
DE ++ G + V+F Y + +L+ +N ++
Sbjct: 319 DEDYDIKNGVG-----------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 207 SRVALVGPNGIGKSTFLNLL 226
VA VG +G GKST +NL+
Sbjct: 368 ETVAFVGMSGGGKSTLINLI 387
Score = 42.6 bits (101), Expect = 1e-04
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 15/56 (26%)
Query: 229 ELTPNKGKVLLEKVNFG-------------LDME--SRVALVGPNGIGKSTFLNLL 269
+ +G++ ++ V+F L +E VA VG +G GKST +NL+
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
Score = 37.6 bits (88), Expect = 0.006
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + R+S+AR P +L+LDE T+ LD
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALD 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 4e-07
Identities = 53/301 (17%), Positives = 95/301 (31%), Gaps = 67/301 (22%)
Query: 19 LARALFLEPTLLLLDEPTNHLDLNAVIW--LDNYLQTWKKTLLVVSHD------QSFLNN 70
L + L P L + T + ++I + + L TW V+ D +S LN
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNV 365
Query: 71 ICTDIIHLDMKKLFYYKGNFTLFKK---------------MYVQKRKELTKE---YELQE 112
+ + +K+F ++F + + + Y L E
Sbjct: 366 LEPA----EYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 113 KQIREMKSQGMS-----KEKAERQHS-HKALKEQARKRVQKDDDDEPKELLEKPREYIVK 166
KQ +E S K K E +++ H+++ + D DD L++ Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---YFYS 475
Query: 167 FRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLD-MESRVALVGPNGIGKSTFLNL 225
+G H +P L V +E ++ + LN
Sbjct: 476 H------------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 226 L------KGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 279
L K + N K VN + + + N I S + +LL+ L
Sbjct: 524 LQQLKFYKPYICDNDPK-YERLVN---AILDFLPKIEENLI-CSKYTDLLRIALMAEDEA 578
Query: 280 L 280
+
Sbjct: 579 I 579
Score = 44.5 bits (104), Expect = 4e-05
Identities = 58/369 (15%), Positives = 108/369 (29%), Gaps = 101/369 (27%)
Query: 31 LLDEPTNHLDLNAVIWL-----DNYLQTWKKTLLVVSHDQSFL-NNICTDIIHLDMKKLF 84
++ + W + +Q + + +L + FL + I T+ M
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRM 111
Query: 85 Y-------YKGNFTLFKKMYVQKRKELTKEYELQE--KQIREMKS---QGM--------- 123
Y Y N +F K V + + K L++ ++R K+ G+
Sbjct: 112 YIEQRDRLYNDN-QVFAKYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 124 ----SKEKAE-------------RQHSHKALKEQARK---------RVQKDDDDEPKELL 157
K + +S + + E +K + D K +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 158 EKPREYIVKFRFPNPPYLPPPVLGLHDV-------TFGYPGGKVLLEKVNFGLDMESR-- 208
+ + + + PY +L L +V F K+LL +R
Sbjct: 228 HSIQAELRRL-LKSKPY-ENCLLVLLNVQNAKAWNAFNL-SCKILLT---------TRFK 275
Query: 209 -VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK-VNFGLDMESRVAL-VGP---NGIGK 262
V L+ LTP++ K LL K ++ R L P + I +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 263 ST--FLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH--------LFPDDT--PCEYLM 310
S L N +L + + E+ +FP P L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 311 KL-FNLPYE 318
+ F++
Sbjct: 394 LIWFDVIKS 402
Score = 37.9 bits (87), Expect = 0.005
Identities = 53/305 (17%), Positives = 96/305 (31%), Gaps = 84/305 (27%)
Query: 37 NHLDLNAVIWLDNYLQ-TWKKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTLFK 94
+H+D Q +K L V + +F++N C D+ DM K K
Sbjct: 5 HHMDFET-----GEHQYQYKDILSV--FEDAFVDNFDCKDV--QDMPKSILSKEEI---- 51
Query: 95 KMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAER------QHSHKALKEQARKRVQKD 148
+ + ++ L + S+ +E ++ + ++K L + ++
Sbjct: 52 DHIIMSKDAVSGTLRL----FWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 149 DDDEPKELLEKPREYIVKFRFPNPPYL---PPPVLGLHDVTFGYPGGKVLLEKVNFGLDM 205
+ ++ R Y F Y P L L + LLE L
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLR---------QALLE-----LRP 149
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK------VNFGLDMESRVALVGPNG 259
V + G G GK+ + ++ + KV + +N L
Sbjct: 150 AKNVLIDGVLGSGKTW----VALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVL----- 199
Query: 260 IGKSTFLNLLKGELTPN---KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL- 315
L L ++ PN + + + +LRI HS + L +L
Sbjct: 200 ----EMLQKLLYQIDPNWTSRSDHSSNIKLRI-----HSIQ---------AELRRLLKSK 241
Query: 316 PYEKS 320
PYE
Sbjct: 242 PYENC 246
Score = 28.7 bits (63), Expect = 3.7
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 31/132 (23%)
Query: 16 RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDI 75
R++L R +FL D +L+ + + + S LN +
Sbjct: 489 RMTLFRMVFL--------------DFR---FLEQKI---RHDSTAWNASGSILNTL---- 524
Query: 76 IHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHK 135
+K YK Y + + E+ + + S+ + +
Sbjct: 525 --QQLKF---YKPYICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDE 577
Query: 136 ALKEQARKRVQK 147
A+ E+A K+VQ+
Sbjct: 578 AIFEEAHKQVQR 589
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 49.1 bits (118), Expect = 6e-07
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 35/155 (22%)
Query: 209 VALVGPNGIGKSTFL---NLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
++++G +G GKSTFL N L+ P++G +++ N L + L
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINLVRDKDGQLK---------- 81
Query: 266 LNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----Y 317
+K +LR R R+ QH +L+ T E +M ++ L
Sbjct: 82 --------VADKNQLRLL-RTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDAR 130
Query: 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E++ + L G+ A LSGGQ+ RV++A
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165
Score = 42.9 bits (102), Expect = 6e-05
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RVS+ARAL +EP +LL DEPT+ LD
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 49.1 bits (118), Expect = 6e-07
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 184 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
DV F YP L+ +NF + + ALVG G GKST LL
Sbjct: 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Score = 40.2 bits (95), Expect = 5e-04
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 16/58 (27%)
Query: 228 GELTPNKGKVLLEKVNFGLDMES----------------RVALVGPNGIGKSTFLNLL 269
+ VNF ++ ALVG G GKST LL
Sbjct: 9 SHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Score = 39.9 bits (94), Expect = 6e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG R R+++AR L +P +++ DE T+ LD
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Score = 28.7 bits (65), Expect = 3.0
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 341 LSGGQKARVALA 352
LSGG++ R+A+A
Sbjct: 156 LSGGERQRIAIA 167
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 49.3 bits (117), Expect = 8e-07
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 7 KEFSGGWRIRVSLA------RALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---T 57
SGG RI + LA L E +LL+LDEPT +LD L ++ + K
Sbjct: 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 306
Query: 58 LLVVSHDQSFLNNI 71
+++VSHD+ +
Sbjct: 307 VILVSHDEELKDAA 320
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 48.9 bits (117), Expect = 8e-07
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 143 KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFG 202
+ V ++ EL EK ++ N + G +L+ +NF
Sbjct: 8 ENVTAFWEEGFGELFEKAKQ-------NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 203 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
++ +A+ G G GK++ L ++ GEL P++GK+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
Score = 47.0 bits (112), Expect = 4e-06
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 58/145 (40%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ HSG
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------HSGRI 101
Query: 299 LFPDDTPCEYLMKLFN---------LPYEKSRRQLGMFGLPSYAHTI------------P 337
F + + Y++ R Y I
Sbjct: 102 SFCSQNSW-----IMPGTIKENIIGVSYDEYR----------YRSVIKACQLEEDISKFA 146
Query: 338 IRD----------LSGGQKARVALA 352
+D LSGGQ+AR++LA
Sbjct: 147 EKDNIVLGEGGITLSGGQRARISLA 171
Score = 38.9 bits (91), Expect = 0.002
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 20/134 (14%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVVS 62
SGG R R+SLARA++ + L LLD P +LD + + + KT ++V+
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMA--NKTRILVT 216
Query: 63 HDQSFLNNICTDIIHLDMKKLFYYKGNF-------TLFKKMYVQKRKELTKEYELQEKQI 115
L I+ L Y+ G F F + E + +
Sbjct: 217 SKMEHLKK-ADKILILHEGSS-YFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSIL 274
Query: 116 REMKSQGMSKEKAE 129
E + + A
Sbjct: 275 TETLHRFSLEGDAP 288
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 47.2 bits (113), Expect = 2e-06
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYL-QTWKKTLLVVSH 63
+ SGG + RV++ARAL P ++L D+PT LD ++ L L + KT++VV+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 64 DQ 65
D
Sbjct: 205 DI 206
Score = 44.1 bits (105), Expect = 3e-05
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 55/193 (28%)
Query: 179 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNK 234
++ L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ G L P +
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG----K 290
G+V ++ + + + ELT ++R R +IG +
Sbjct: 60 GEVYIDNIK--------TNDLDDD-------------ELT----KIR---RDKIGFVFQQ 91
Query: 291 FDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRR---QLGMFGLPS-YAHTIPIR 339
F +L P T P + + E+ +R L M L +A+ P
Sbjct: 92 F------NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-N 144
Query: 340 DLSGGQKARVALA 352
LSGGQ+ RVA+A
Sbjct: 145 QLSGGQQQRVAIA 157
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 47.1 bits (113), Expect = 2e-06
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 177 PPVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
VL + + Y G + ++ ++ + V L+G NG GK+T L+ + G + KG
Sbjct: 4 DIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 236 KVLLE 240
K++
Sbjct: 62 KIIFN 66
Score = 39.0 bits (92), Expect = 0.001
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
V L+G NG GK+T L+ + G + KG++
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Score = 33.6 bits (78), Expect = 0.060
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPT 36
SGG + +++ RAL P LL++DEP+
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPS 167
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 46.8 bits (112), Expect = 3e-06
Identities = 32/143 (22%), Positives = 47/143 (32%), Gaps = 53/143 (37%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
L + F + + VA+VG G GKS+ L+ L E+ +G + + Q +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQA--- 75
Query: 299 LFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI------------PIR 339
++ LF E+ Y I P
Sbjct: 76 ---------WIQNDSLRENILFGCQLEEPY----------YRSVIQACALLPDLEILPSG 116
Query: 340 D----------LSGGQKARVALA 352
D LSGGQK RV+LA
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLA 139
Score = 46.0 bits (110), Expect = 5e-06
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ + TF + L + F + + VA+VG G GKS+ L+ L E+ +G V
Sbjct: 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Score = 40.6 bits (96), Expect = 4e-04
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 10 SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVVS 62
SGG + RVSLARA++ + L D+P + +D VI L+ KT ++V+
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRILVT 186
Query: 63 HDQSFLNNICTDIIHLD 79
H S+L II +
Sbjct: 187 HSMSYLPQ-VDVIIVMS 202
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 45.1 bits (106), Expect = 7e-06
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 99 QKRKE---LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR------VQKDD 149
+ +E + K E Q K+++E+ + E+ R+ + K L+E +++ + ++
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 150 DDEPKELLEKPREYIV 165
K ++P I+
Sbjct: 139 RIADKAFYQQPDADII 154
Score = 30.9 bits (69), Expect = 0.46
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 94 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD 150
K M + R++ K+ E ++ E + K K + + KA + Q D D
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQ----VEKNKINNRIADKAFYQ------QPDAD 152
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 45.7 bits (109), Expect = 1e-05
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-------NAVIWLDNYLQTWKKTLL 59
+E SG + RV+LARAL +P+LLLLDEP ++LD V + + L TLL
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV---TLL 195
Query: 60 VVSHDQ 65
VVSHD
Sbjct: 196 VVSHDP 201
Score = 42.3 bits (100), Expect = 1e-04
Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 64/191 (33%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ +V+ + GKV+ N +++E+ ++GP+G GK+TF+ ++ G P+ G++
Sbjct: 6 VKNVSKVFKKGKVVALD-NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 240 --EKVNFGLDMESRVALVGPN--GIG-----------KSTFLNL---LKGELTPNKGELR 281
V + +V P IG + F N+ L
Sbjct: 65 DDRLVA-----SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT---------NM 110
Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 341
K + I K + + + + P R+L
Sbjct: 111 KMSKEEIRK----------------------------RVEEVAKILDIHHVLNHFP-REL 141
Query: 342 SGGQKARVALA 352
SG Q+ RVALA
Sbjct: 142 SGAQQQRVALA 152
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 43.6 bits (103), Expect = 1e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 10 SGGWRIRVSLA------RALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLV 60
SGG RI + LA L E +LL+LDEPT +LD L ++ + K +++
Sbjct: 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118
Query: 61 VSHD 64
VSHD
Sbjct: 119 VSHD 122
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 43.5 bits (103), Expect = 6e-05
Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 48/206 (23%)
Query: 160 PREYIVKFRFPNPPYLPPPVLGLHDV--TFGYPGGKVL-LEKVNFGLDMESRVALVGPNG 216
+ + ++ L ++ F + L V+ + ++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 217 IGKSTF---LNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273
GKST +NLL+ P +G VL++ L L
Sbjct: 65 AGKSTLIRCVNLLE---RPTEGSVLVDGQE----------------------LTTLSES- 98
Query: 274 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGM 326
EL K+ R +IG QH +L T ++L N P ++ +R+ L +
Sbjct: 99 -----ELTKA-RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL 150
Query: 327 FGLPSYAHTIPIRDLSGGQKARVALA 352
GL + P +LSGGQK RVA+A
Sbjct: 151 VGLGDKHDSYP-SNLSGGQKQRVAIA 175
Score = 41.1 bits (97), Expect = 4e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
SGG + RV++ARAL P +LL D+ T+ LD
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 42.8 bits (101), Expect = 1e-04
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 30/142 (21%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT------WKKTLLVVS 62
S G + + LAR++ + +LLLDEP+ HLD ++ T+++
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV----TYQIIRRTLKQAFADCTVILCE 211
Query: 63 HDQSFLNNI--CTDIIHLDM---------KKLFYYKGNFTLFKKMYVQKRKELTKEYELQ 111
+ + C + ++ +L++Y + F + K L
Sbjct: 212 AR---IEAMLECDQFLVIEENKVRQYDSILELYHYPAD--RFVAGF----IGSPKMNFLP 262
Query: 112 EKQIREMKSQGMSKEKAERQHS 133
K Q + +
Sbjct: 263 VKVTATAIDQVQVELPMPNRQQ 284
Score = 32.0 bits (73), Expect = 0.27
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 171 NPPYLPP---PVLG---LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
N P G + D+T Y GG +LE ++F + RV L+G G GKST L
Sbjct: 5 NSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Query: 224 NLLKGELTPNKGKVLLEKVN---FGL-DMESRVALV 255
+ L +G++ ++ V+ L ++
Sbjct: 65 SAFLR-LLNTEGEIQIDGVSWDSITLEQWRKAFGVI 99
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 42.5 bits (101), Expect = 2e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 168 RFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 223
+ P V G +V F Y L VNF + S VA++G G GKST +
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 224 NLLKGELTPNKGKVLLEKVN 243
NL+ + P +G+V +++++
Sbjct: 387 NLIPRLIDPERGRVEVDELD 406
Score = 34.8 bits (81), Expect = 0.043
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
FSGG + R+S+ARAL +P +L+LD+ T+ +D
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 30.2 bits (69), Expect = 1.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
+L VNF + S VA++G G GKST +NL+
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 41.0 bits (97), Expect = 3e-04
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
+ SGG + RV++ARAL EP +LLLDEP ++LD A + L L T
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALLRLEVRAELKRLQKELGI---T 186
Query: 58 LLVVSHDQ 65
+ V+HDQ
Sbjct: 187 TVYVTHDQ 194
Score = 36.8 bits (86), Expect = 0.007
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 243 NFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLR-IGKF 291
N L ++ +AL+GP+G GKST L + G P G++ P+ R +G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 292 DQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLSGG 344
Q+ L+P T + + ++L P E+ +++ M + + P LSGG
Sbjct: 81 FQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSGG 137
Query: 345 QKARVALA 352
Q+ RVA+A
Sbjct: 138 QQQRVAIA 145
Score = 34.9 bits (81), Expect = 0.038
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L ++ + L N L ++ +AL+GP+G GKST L + G P GK+
Sbjct: 6 LENIVKKFGNFTAL---NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 240 --EKVN 243
+ V
Sbjct: 63 DEKDVT 68
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 40.2 bits (94), Expect = 7e-04
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFL-------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW 54
+ SGG +I V+L+ L + ++LDEPT +LD N L +
Sbjct: 274 GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333
Query: 55 KKT--LLVVSHDQSFLNNI 71
K +++++H + +
Sbjct: 334 KSIPQMIIITHHRELEDVA 352
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 39.9 bits (94), Expect = 8e-04
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 14/68 (20%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
+ SGG R RV++ARA+ +EP +LL+DEP ++LD A + L L+ T
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD--AKLRVAMRAEIKKLQQKLKV---T 194
Query: 58 LLVVSHDQ 65
+ V+HDQ
Sbjct: 195 TIYVTHDQ 202
Score = 35.3 bits (82), Expect = 0.027
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 243 NFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLRIGKFD 292
L ++ + L+GP+G GK+T L ++ G P +G + P+ R +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR----N 84
Query: 293 -----QHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRD 340
Q ++P T E + +K+ P ++ +++ + + + P
Sbjct: 85 ISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-AQ 141
Query: 341 LSGGQKARVALA 352
LSGGQ+ RVA+A
Sbjct: 142 LSGGQRQRVAVA 153
Score = 33.4 bits (77), Expect = 0.11
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L ++T + + L ++ + L+GP+G GK+T L ++ G P +G++
Sbjct: 14 LENLTKRFGNFTAV---NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 240 --EKVN 243
V
Sbjct: 71 GDRDVT 76
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 39.9 bits (94), Expect = 9e-04
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
+ SGG + RV+LARAL +P +LL DEP ++LD A + L L T
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--ANLRMIMRAEIKHLQQELGI---T 186
Query: 58 LLVVSHDQ 65
+ V+HDQ
Sbjct: 187 SVYVTHDQ 194
Score = 34.1 bits (79), Expect = 0.062
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 243 NFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
+++ VAL+GP+G GK+T L +L G P GE+
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Score = 33.3 bits (77), Expect = 0.088
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 189 YPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EKVN 243
Y G ++ V+ +++ VAL+GP+G GK+T L +L G P G++ VN
Sbjct: 12 YFGKVKAVDGVS--FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTL------LLLDEPTNHLD---LNAVIWLDNYLQ 52
E+ + SGG R +S++ A+ L +DE + LD + + L+
Sbjct: 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE 332
Query: 53 TWKKTLLVVSHDQSFLNNI 71
K ++ ++HD+ F
Sbjct: 333 RLNKVIVFITHDREFSEAF 351
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 38.8 bits (91), Expect = 0.002
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
+E SGG R RV+L RA+ +P + L+DEP ++LD A + L L T
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD--AKLRVRMRAELKKLQRQLGV---T 192
Query: 58 LLVVSHDQ 65
+ V+HDQ
Sbjct: 193 TIYVTHDQ 200
Score = 35.7 bits (83), Expect = 0.018
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 35/138 (25%)
Query: 243 NFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF---DQHSGE 297
L+++ + L+GP+G GK+T L ++ G P++G+ + IG D G
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ------IYIGDKLVADPEKGI 74
Query: 298 HLFPDD----------------TPCE---YLMKLFNLPYEKSRRQL----GMFGLPSYAH 334
+ P D T + + +KL +P ++ +++ + GL +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 335 TIPIRDLSGGQKARVALA 352
P R+LSGGQ+ RVAL
Sbjct: 135 RKP-RELSGGQRQRVALG 151
Score = 33.7 bits (78), Expect = 0.087
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L DV + + L+++ + L+GP+G GK+T L ++ G P++G++ +
Sbjct: 6 LVDVWKVFGEVTAV---REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 240 --EKVN 243
+ V
Sbjct: 63 GDKLVA 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.003
Identities = 44/241 (18%), Positives = 70/241 (29%), Gaps = 68/241 (28%)
Query: 134 HKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTF--GYPG 191
+K L E D+ P EL+ K Y+ P+ VL L F Y
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 192 GK----VLLEKVNFGLDMESRVALVGPNGIGKSTF--LNLLKGELTPNKGKVLLEKVNFG 245
G + + L E+ LV + K+ + K L V G
Sbjct: 98 GNDIHALAAK-----LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 246 LDMESRVALV-GPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSGEHLF- 300
+++ + G G F ELR ++ + +G + S E L
Sbjct: 153 ---NAQLVAIFGGQGNTDDYF------------EELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 301 ------------------------PDDTP-CEYLMK-LFNLP---------YEKSRRQLG 325
P +TP +YL+ + P Y + + LG
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 326 M 326
Sbjct: 258 F 258
Score = 37.7 bits (87), Expect = 0.006
Identities = 36/195 (18%), Positives = 56/195 (28%), Gaps = 71/195 (36%)
Query: 120 SQ--GMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
SQ GM + + + + + +A D+ K+ IV NP L
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRA--------DNHFKDTYGFSILDIVI---NNPVNL-- 1672
Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
+ FG GK + E N+ M T GK+
Sbjct: 1673 ------TIHFGGEKGKRIRE--NY-SAMIFE----------------------TIVDGKL 1701
Query: 238 LLEKVNFGLDME-SRVALVGPNGIGKST-------------FLNLLKGELTPNKGELRKS 283
EK+ ++ + G+ +T LK +KG L +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK-----SKG-LIPA 1755
Query: 284 PRLRIGKFDQHS-GE 297
G HS GE
Sbjct: 1756 DATFAG----HSLGE 1766
Score = 29.2 bits (65), Expect = 2.9
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 46/152 (30%)
Query: 176 PPPVLGLHDVTFGYPGGKV--LLEKVNFGLDMESRV--ALV-GPNGI---GKSTFLNLLK 227
P P+L + ++T +V + K N L +V +LV G + G L L
Sbjct: 335 PSPMLSISNLTQE----QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 228 GELTPNKGKVLLEKVNFGLDMESRV-----ALVGPNGIGKSTFL---------------N 267
L K K GLD +SR+ L N FL +
Sbjct: 391 LTLR----KA---KAPSGLD-QSRIPFSERKLKFSN-----RFLPVASPFHSHLLVPASD 437
Query: 268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
L+ +L N ++I +D G L
Sbjct: 438 LINKDLVKNNVSFNAK-DIQIPVYDTFDGSDL 468
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 35.2 bits (82), Expect = 0.018
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV------IWLDNYLQTWKKTLLVVS 62
FSGG + R + + L LEPT +LDE + LD++A+ + N ++ LV++
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV---NAMRGPNFGALVIT 200
Query: 63 HDQSFLNNICTDIIH 77
H Q LN I D +H
Sbjct: 201 HYQRILNYIQPDKVH 215
Score = 34.8 bits (81), Expect = 0.026
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 210 ALVGPNGIGKSTFLNLLKG----ELTPNKGKVLLEKVNFGLDME 249
AL+GPNG GKST +L G + +G++LL+ N L++
Sbjct: 33 ALMGPNGAGKSTLGKILAGDPEYTVE--RGEILLDGENI-LELS 73
Score = 30.9 bits (71), Expect = 0.47
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 15/47 (31%)
Query: 226 LKG-ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 271
LKG L KG+V AL+GPNG GKST +L G
Sbjct: 19 LKGVNLVVPKGEV--------------HALMGPNGAGKSTLGKILAG 51
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 35.6 bits (83), Expect = 0.022
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
K SGG R RV++ R L EP++ LLDEP ++LD
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 30.6 bits (70), Expect = 0.69
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKG 228
+ L +VT + V + LD+ V VGP+G GKST L ++ G
Sbjct: 4 VQLQNVTKAWGEVVVS---KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
Score = 29.4 bits (67), Expect = 1.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 243 NFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
+ LD+ V VGP+G GKST L ++ G T G+L
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Score = 27.5 bits (62), Expect = 7.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 339 RDLSGGQKARVAL 351
+ LSGGQ+ RVA+
Sbjct: 132 KALSGGQRQRVAI 144
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 35.2 bits (82), Expect = 0.024
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 210 ALVGPNGIGKSTFLNLLKG----ELTPNKGKVLLEKVNFGLDME 249
A++GPNG GKST L G E+T G V + + L +
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVT--GGTVEFKGKDL-LALS 90
Score = 34.1 bits (79), Expect = 0.049
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV------IWLDNYLQTWKKTLLVVS 62
FSGG + R + + LEP L +LDE + LD++A+ + N L+ K++ ++V+
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV---NSLRDGKRSFIIVT 221
Query: 63 HDQSFLNNICTDIIH 77
H Q L+ I D +H
Sbjct: 222 HYQRILDYIKPDYVH 236
Score = 30.6 bits (70), Expect = 0.68
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 253 ALVGPNGIGKSTFLNLLKG 271
A++GPNG GKST L G
Sbjct: 50 AIMGPNGSGKSTLSATLAG 68
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 33.9 bits (78), Expect = 0.043
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE--------LTPNKGELRKSPRLRI 288
+ + + GP GK++ L LL + P + +
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 95
Score = 31.2 bits (71), Expect = 0.36
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
+ + + GP GK++ L LL +
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTD 71
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 34.4 bits (80), Expect = 0.058
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
+VA+VG PN +GKST N + +
Sbjct: 182 KVAIVGRPN-VGKSTLFNAILNK 203
Score = 34.4 bits (80), Expect = 0.058
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
+VA+VG PN +GKST N + +
Sbjct: 182 KVAIVGRPN-VGKSTLFNAILNK 203
Score = 29.0 bits (66), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
V +VG PN +GKST N L +
Sbjct: 4 VLIVGRPN-VGKSTLFNKLVKK 24
Score = 29.0 bits (66), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
V +VG PN +GKST N L +
Sbjct: 4 VLIVGRPN-VGKSTLFNKLVKK 24
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 33.6 bits (77), Expect = 0.070
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE--------LTPNKGELRKSPRLRI 288
+ + + GP GK++ L LL + P + +
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 59
Score = 30.5 bits (69), Expect = 0.59
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
+ + + GP GK++ L LL +
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTD 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 34.0 bits (79), Expect = 0.074
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
+ L+G PN +GKS+ +N + GE
Sbjct: 177 QFCLIGRPN-VGKSSLVNAMLGE 198
Score = 34.0 bits (79), Expect = 0.074
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
+ L+G PN +GKS+ +N + GE
Sbjct: 177 QFCLIGRPN-VGKSSLVNAMLGE 198
Score = 29.0 bits (66), Expect = 2.6
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
VA+VG PN +GKST N + GE
Sbjct: 6 VAIVGRPN-VGKSTIFNRIAGE 26
Score = 29.0 bits (66), Expect = 2.6
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
VA+VG PN +GKST N + GE
Sbjct: 6 VAIVGRPN-VGKSTIFNRIAGE 26
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 33.2 bits (75), Expect = 0.11
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
RV + GP+G+GK+T LL + + + E + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTY 42
Score = 31.3 bits (70), Expect = 0.50
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPN 276
RV + GP+G+GK+T LL + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRD 31
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 33.2 bits (75), Expect = 0.13
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 93 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDE 152
++ Y KR E E + +E+++R+M Q + +++AE + + K L E+ R++K DE
Sbjct: 320 LQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEK-FDRLKKLHQDE 378
Query: 153 PKELLEKPRE 162
K+L +K +
Sbjct: 379 KKKLEDKKKS 388
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.2 bits (74), Expect = 0.20
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 210 ALVGPNGIGKSTFLNLLKGEL 230
G +G+GKS+ LN + EL
Sbjct: 177 VFAGQSGVGKSSLLNAISPEL 197
Score = 32.2 bits (74), Expect = 0.20
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 253 ALVGPNGIGKSTFLNLLKGEL 273
G +G+GKS+ LN + EL
Sbjct: 177 VFAGQSGVGKSSLLNAISPEL 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 32.1 bits (74), Expect = 0.20
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 210 ALVGPNGIGKSTFLNLLKGEL 230
+ G +G+GKS+ LN + L
Sbjct: 173 TMAGLSGVGKSSLLNAINPGL 193
Score = 32.1 bits (74), Expect = 0.20
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 253 ALVGPNGIGKSTFLNLLKGEL 273
+ G +G+GKS+ LN + L
Sbjct: 173 TMAGLSGVGKSSLLNAINPGL 193
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 32.4 bits (73), Expect = 0.21
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
R+ L G GIGKST ++ + +
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 41
Score = 31.6 bits (71), Expect = 0.32
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKG 278
R+ L G GIGKST ++ +
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSP 36
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 31.9 bits (72), Expect = 0.21
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSH--------KALKEQARKRVQKDDD 150
+ + Q K + ++ + E + ++ E+ ++R++ +
Sbjct: 40 NAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSE 99
Query: 151 DEPKELLEK 159
DE E ++
Sbjct: 100 DEYFESVKA 108
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 32.3 bits (73), Expect = 0.22
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 65 QSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMS 124
Q ++N ++ YY K++Y + Y I K G
Sbjct: 211 QYYINQFEHLKTIKNISINGYYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGK- 269
Query: 125 KEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNP 172
+ H++L E+ K K+ PKE+ Y+ P P
Sbjct: 270 ------EDIHRSLVEELTKISAKEKFTPPKEVTMYYENYVAIENNPIP 311
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.5 bits (75), Expect = 0.23
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKGE 272
+ G +L GL R+ +VG PN +GKST LN L E
Sbjct: 235 DAGILLNR----GL----RMVIVGKPN-VGKSTLLNRLLNE 266
Score = 31.8 bits (73), Expect = 0.37
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
Query: 192 GKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKGE 229
G +L GL R+ +VG PN +GKST LN L E
Sbjct: 237 GILLNR----GL----RMVIVGKPN-VGKSTLLNRLLNE 266
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.5 bits (75), Expect = 0.23
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKGE 272
G+++ E G+ + G PN GKST LN L G+
Sbjct: 225 QHGRIVSE----GV----STVIAGKPN-AGKSTLLNTLLGQ 256
Score = 31.7 bits (73), Expect = 0.35
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 10/39 (25%)
Query: 192 GKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKGE 229
G+++ E G+ + G PN GKST LN L G+
Sbjct: 227 GRIVSE----GV----STVIAGKPN-AGKSTLLNTLLGQ 256
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 31.3 bits (72), Expect = 0.24
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 207 SRVALVG-PNGIGKSTFLNLLKGE 229
+V +VG PN +GKS+ N L +
Sbjct: 2 HKVVIVGRPN-VGKSSLFNRLLKK 24
Score = 31.3 bits (72), Expect = 0.24
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 250 SRVALVG-PNGIGKSTFLNLLKGE 272
+V +VG PN +GKS+ N L +
Sbjct: 2 HKVVIVGRPN-VGKSSLFNRLLKK 24
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.1 bits (74), Expect = 0.24
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 10/41 (24%)
Query: 233 NKGKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKGE 272
+KG++L GL +VA+VG PN +GKS+ LN
Sbjct: 216 DKGELLRT----GL----KVAIVGRPN-VGKSSLLNAWSQS 247
Score = 31.7 bits (73), Expect = 0.39
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
Query: 192 GKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKGE 229
G++L GL +VA+VG PN +GKS+ LN
Sbjct: 218 GELLRT----GL----KVAIVGRPN-VGKSSLLNAWSQS 247
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 32.0 bits (74), Expect = 0.25
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
VA+VG PN +GKST LN L G
Sbjct: 10 VAIVGKPN-VGKSTLLNNLLGV 30
Score = 32.0 bits (74), Expect = 0.25
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
VA+VG PN +GKST LN L G
Sbjct: 10 VAIVGKPN-VGKSTLLNNLLGV 30
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 32.4 bits (74), Expect = 0.25
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 150 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV 209
+ E E + F + P + V G + +E + + + V
Sbjct: 8 NREALAPREYGESLELGIEFTTTEEIEVPEKLIDQVI----GQEHAVEVIKTAANQKRHV 63
Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
L+G G GKS + L + +L N
Sbjct: 64 LLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98
Score = 28.5 bits (64), Expect = 4.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTF 265
+E + + + V L+G G GKS
Sbjct: 50 VEVIKTAANQKRHVLLIGEPGTGKSML 76
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 31.7 bits (71), Expect = 0.27
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
E L G NG GKST + L P+ L
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59
Score = 31.0 bits (69), Expect = 0.53
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
E L G NG GKST + L P+ +
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 32.0 bits (73), Expect = 0.27
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 40/154 (25%)
Query: 100 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ-------------ARKRVQ 146
K +E T ++ +Q S S + + K L+E +
Sbjct: 12 KIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSV 71
Query: 147 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME 206
+ + ++ K +E + + P K
Sbjct: 72 EAGGLTEENVVGKLQEILCDMLPSADKWQEPI------------HSKY------------ 107
Query: 207 SRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLL 239
+ L G G GK+T L L K K+
Sbjct: 108 --IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAF 139
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV-ALVGPNGIGKST 264
V G+ + + L+ L +L + + S+ L G G GK+T
Sbjct: 67 LRFSVEAGGLTEENVVGKLQEILC----DMLPSADKWQEPIHSKYIVLFGSTGAGKTT 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 31.7 bits (73), Expect = 0.28
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
VA+VG PN +GKST LN L G
Sbjct: 13 VAIVGKPN-VGKSTLLNNLLGT 33
Score = 31.7 bits (73), Expect = 0.28
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
VA+VG PN +GKST LN L G
Sbjct: 13 VAIVGKPN-VGKSTLLNNLLGT 33
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 31.6 bits (72), Expect = 0.29
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
+ V VG GK+ L
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTG 30
Score = 31.6 bits (72), Expect = 0.29
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
+ V VG GK+ L
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTG 30
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 31.7 bits (73), Expect = 0.29
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
+A+VG PN +GKST LN L G+
Sbjct: 11 IAIVGRPN-VGKSTLLNKLLGQ 31
Score = 31.7 bits (73), Expect = 0.29
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
+A+VG PN +GKST LN L G+
Sbjct: 11 IAIVGRPN-VGKSTLLNKLLGQ 31
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 31.8 bits (72), Expect = 0.31
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
RV + G G+GKST + L L +V
Sbjct: 81 RVGITGVPGVGKSTAIEALGMHLIERGHRV 110
Score = 29.4 bits (66), Expect = 1.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELT 274
RV + G G+GKST + L L
Sbjct: 81 RVGITGVPGVGKSTAIEALGMHLI 104
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 31.6 bits (71), Expect = 0.36
Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 26/159 (16%)
Query: 194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESR-- 251
V L L ++ G+ F + ++ V + V + +
Sbjct: 73 VNLVDSLKTLQPNKVAEMIENQGL----FKDHVE--------DVNFQPVKYSALTSNNEE 120
Query: 252 -VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
A+V G + + + + N +L + G HL L
Sbjct: 121 CTAVVARGGTANAIRIAAVDNPV--NVNKLAQDSINIAQIVPM-DGFHL-----SRRCLD 172
Query: 311 KLFNLPYEKSRR-QLGMFGLPSYAHTIPIRDLSGGQKAR 348
+ RR F ++ I L+ +
Sbjct: 173 LFKDPQTAHKRRGSPSTFDSNNFLQLCKI--LAKTSLCK 209
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.36
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 204 DMESRVALVGPNGIGKSTFLNLLKGE 229
R+ ++G GKSTFLN L GE
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGE 92
Score = 31.9 bits (71), Expect = 0.36
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 247 DMESRVALVGPNGIGKSTFLNLLKGE 272
R+ ++G GKSTFLN L GE
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGE 92
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 31.7 bits (71), Expect = 0.37
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
R+ L G GIGK+T ++LL
Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 45
Score = 29.8 bits (66), Expect = 1.4
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGE 279
R+ L G GIGK+T
Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAITPNR 42
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 31.0 bits (71), Expect = 0.37
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 208 RVALVG-PNGIGKSTFLNLLKGE 229
+V + G PN GKS+ LN L G
Sbjct: 6 KVVIAGRPN-AGKSSLLNALAGR 27
Score = 31.0 bits (71), Expect = 0.37
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE 272
+V + G PN GKS+ LN L G
Sbjct: 6 KVVIAGRPN-AGKSSLLNALAGR 27
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.4 bits (71), Expect = 0.37
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
RV L GP G GKSTF+ LT K+
Sbjct: 76 RVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105
Score = 29.1 bits (65), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELT 274
RV L GP G GKSTF+ LT
Sbjct: 76 RVGLSGPPGAGKSTFIEYFGKMLT 99
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.1 bits (70), Expect = 0.37
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE----HLFPD 302
+ + R+ LVG G GKS N + G + + K ++ S L
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGR---KVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
Query: 303 DTP 305
DTP
Sbjct: 84 DTP 86
Score = 31.1 bits (70), Expect = 0.38
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 204 DMESRVALVGPNGIGKSTFLNLLKGE 229
+ + R+ LVG G GKS N + G
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGR 52
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.4 bits (72), Expect = 0.40
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 210 ALVGPNGIGKSTFLNLLKGE 229
L GP+G+GKS+ L+ L GE
Sbjct: 169 ILAGPSGVGKSSILSRLTGE 188
Score = 31.4 bits (72), Expect = 0.40
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 253 ALVGPNGIGKSTFLNLLKGE 272
L GP+G+GKS+ L+ L GE
Sbjct: 169 ILAGPSGVGKSSILSRLTGE 188
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.8 bits (69), Expect = 0.40
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245
V + G G+G +T L L + V+FG
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY--KMVSFG 40
Score = 28.1 bits (62), Expect = 3.1
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKGEL 273
V + G G+G +T L L
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 31.3 bits (71), Expect = 0.40
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
R+ + G G GKSTFL L KV
Sbjct: 58 RLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87
Score = 29.0 bits (65), Expect = 2.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELT 274
R+ + G G GKSTFL L
Sbjct: 58 RLGVTGTPGAGKSTFLEAFGMLLI 81
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.9 bits (69), Expect = 0.42
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
+ G G+GKST L +K L + +N+G M
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN--KIINYGDFM 41
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 31.1 bits (71), Expect = 0.45
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 191 GGKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKG 228
KVLL+K D +RV +VG PN GKST +N LKG
Sbjct: 86 PRKVLLKK--LSFDRLARVLIVGVPN-TGKSTIINKLKG 121
Score = 30.3 bits (69), Expect = 0.73
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 236 KVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLLKG 271
KVLL+K D +RV +VG PN GKST +N LKG
Sbjct: 88 KVLLKK--LSFDRLARVLIVGVPN-TGKSTIINKLKG 121
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.1 bits (71), Expect = 0.48
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
G +G+GKS+ LN L G
Sbjct: 218 SIFAGQSGVGKSSLLNALLGL 238
Score = 31.1 bits (71), Expect = 0.48
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 252 VALVGPNGIGKSTFLNLLKGE 272
G +G+GKS+ LN L G
Sbjct: 218 SIFAGQSGVGKSSLLNALLGL 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 30.9 bits (70), Expect = 0.60
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
RV + G G+GKST ++ L LT KV
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKV 86
Score = 28.6 bits (64), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELT 274
RV + G G+GKST ++ L LT
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLT 80
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.3 bits (68), Expect = 0.64
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
++A+ G G GKST + +L ++ E V
Sbjct: 2 KIAIFGTVGAGKSTISAEISKKL---GYEIFKEPVE 34
Score = 27.6 bits (61), Expect = 5.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
++A+ G G GKST + +L
Sbjct: 2 KIAIFGTVGAGKSTISAEISKKL 24
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 31.0 bits (69), Expect = 0.67
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
RV + GP+G+GK+T LL + + + E + +
Sbjct: 51 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTY 87
Score = 28.3 bits (62), Expect = 4.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPN 276
RV + GP+G+GK+T LL + +
Sbjct: 51 RVYIDGPHGMGKTTTTQLLVALGSRD 76
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 30.5 bits (68), Expect = 0.72
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 267
R+++ G +GKSTF+ LL + V E V ++++ L+
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTY--PEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 268 L 268
+
Sbjct: 62 M 62
Score = 27.0 bits (59), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
R+++ G +GKSTF+ LL
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTY 26
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.0 bits (70), Expect = 0.74
Identities = 17/140 (12%), Positives = 35/140 (25%), Gaps = 28/140 (20%)
Query: 104 LTKEYELQEKQIREMKSQGMSKEKAER---------------------QHSHKALKEQAR 142
+ L + ++KSQ ++A +K L +
Sbjct: 29 MISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYISFYNALLHEGYKDLAALLQ 88
Query: 143 KRVQKDDDDEPKELLEKPREYIVKFRFP-NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 201
+ K+ ++ P P + + + +K+
Sbjct: 89 SGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLV------HAIQQKLWK 142
Query: 202 GLDMESRVALVGPNGIGKST 221
V + G G GKS
Sbjct: 143 LNGEPGWVTIYGMAGCGKSV 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.5 bits (68), Expect = 0.74
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 211 LVGPNGIGKSTFLN-LLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI 260
+VG +G+GKST +N L +L + ++ + +E L+ G+
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 63
Score = 30.1 bits (67), Expect = 0.97
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 254 LVGPNGIGKSTFLNLL 269
+VG +G+GKST +N L
Sbjct: 13 VVGESGLGKSTLINSL 28
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.2 bits (67), Expect = 0.93
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 254 LVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLR 287
+VG +G+GKST +N L +L P + + ++
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIE 57
Score = 29.8 bits (66), Expect = 1.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 211 LVGPNGIGKSTFLNLL 226
+VG +G+GKST +N L
Sbjct: 23 VVGESGLGKSTLINSL 38
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.4 bits (69), Expect = 0.93
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
+ + G N +GKS+F+N L G+
Sbjct: 37 IVVAGRRN-VGKSSFMNALVGQ 57
Score = 30.4 bits (69), Expect = 0.93
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
+ + G N +GKS+F+N L G+
Sbjct: 37 IVVAGRRN-VGKSSFMNALVGQ 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 1.1
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 99 QKRKELTKEYELQEKQIREMKSQ--GMSKEKAERQHSHKALKEQARKRVQ--KDDDDEPK 154
K +L ++ + Q K+ + + + + + ++ E+ R + K+ +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 155 ELLEK 159
L E+
Sbjct: 988 SLQEE 992
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 29.7 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
VAL G G GKST N L L+ +
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEV 55
Score = 26.6 bits (59), Expect = 9.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPN 276
VAL G G GKST N L L+
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQ 49
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 30.3 bits (67), Expect = 1.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
E L G NG GKST + L P+ L
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61
Score = 29.5 bits (65), Expect = 2.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
E L G NG GKST + L P+ +
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.2 bits (67), Expect = 1.3
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
LEK+ RV +VG + GK++ L
Sbjct: 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAY 168
Score = 29.8 bits (66), Expect = 1.5
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
LEK+ RV +VG + GK++ L
Sbjct: 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 29.5 bits (66), Expect = 1.4
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 215 NGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
G +TF + +L G + E VN + ++G G+GKS+ +N + GE
Sbjct: 10 EWSGINTFAPATQTKLLELLGNLKQEDVN-----SLTILVMGKGGVGKSSTVNSIIGE 62
Score = 29.1 bits (65), Expect = 2.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
+ ++G G+GKS+ +N + GE
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGE 62
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 1.5
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 247 DMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSP 284
++ ++ GP GK+T L + ++ KGE+
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLA 50
Score = 28.9 bits (65), Expect = 1.6
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 204 DMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
++ ++ GP GK+T L + ++ +
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR 42
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 28.6 bits (64), Expect = 1.5
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKA-ERQHSHKALKEQARKRVQKDDD 150
+ + KE ++K R + SKE+ + ++K R +V+ +
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVK-AMRGKVRSGRE 140
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 29.2 bits (66), Expect = 1.8
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 31/97 (31%)
Query: 251 RVALVG-PNGIGKSTFLNLLKGE---LTPNK-GELRKSPRLRIGK--------------- 290
R ++G PN +GKST +N L + T ++ G +++GK
Sbjct: 122 RALIIGIPN-VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF 180
Query: 291 FDQHSG----------EHLFPDDTPCEYLMKLFNLPY 317
D+ G + + + ++ Y
Sbjct: 181 EDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHY 217
Score = 28.8 bits (65), Expect = 2.4
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 208 RVALVG-PNGIGKSTFLNLLKG 228
R ++G PN +GKST +N L
Sbjct: 122 RALIIGIPN-VGKSTLINRLAK 142
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 28.7 bits (65), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+L K+ D E R+ L+G + GK+T L L E
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
Score = 28.7 bits (65), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+L K+ D E R+ L+G + GK+T L L E
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 201 FGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+G + E R+ ++G +G GK+T L L+
Sbjct: 13 WGSNKELRILILGLDGAGKTTILYRLQIG 41
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+G + E R+ ++G +G GK+T L L+
Sbjct: 13 WGSNKELRILILGLDGAGKTTILYRLQIG 41
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 29.4 bits (67), Expect = 2.1
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 184 DVTFGYPGGKVL 195
FG PG K+
Sbjct: 27 RQVFGIPGAKID 38
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
VA+ G G GKS+F+N L+G
Sbjct: 71 NVAVTGETGSGKSSFINTLRGI 92
Score = 29.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
VA+ G G GKS+F+N L+G
Sbjct: 71 NVAVTGETGSGKSSFINTLRGI 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 29.1 bits (64), Expect = 2.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 211 LVGPNGIGKSTFLNLLKGELTPN 233
L G +G GK+T + + E N
Sbjct: 37 LGGQSGAGKTTIHRIKQKEFQGN 59
Score = 29.1 bits (64), Expect = 2.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPN 276
L G +G GK+T + + E N
Sbjct: 37 LGGQSGAGKTTIHRIKQKEFQGN 59
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction,
syphilis, lipoprotein, transport protein; HET: EDO;
1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Length = 328
Score = 28.9 bits (65), Expect = 2.2
Identities = 6/70 (8%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 102 KELTKEYELQEKQIREMKSQGM---SKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158
+ + + ++ G+ E Q ++ + L E
Sbjct: 260 ANNLETLD--RECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVKRIQARLPGMLNMTLYE 317
Query: 159 KPREYIVKFR 168
K + + +
Sbjct: 318 KIKHLLYSAQ 327
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 29.3 bits (65), Expect = 2.4
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 94 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKA 136
++ + +E + E Q RE + G S A H H
Sbjct: 759 SDLWKEDLAAFVEELDKVESQEREDGAPGFSSISAHHHHHHHH 801
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.5 bits (63), Expect = 2.5
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 304
M +++VG + GK+T + + L + R+ + K H + +
Sbjct: 1 MSLILSIVGTSDSGKTTLITRMMPILR------ERGLRVAVVKRHAHGDFEIDKEGK 51
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.1 bits (62), Expect = 2.9
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 242 VNFGLDMESRVALV-GPNGIGKSTFLNLLKGELTPNKGELR 281
+N D+ + L+ G G GKST L K
Sbjct: 1 MNMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41
Score = 27.7 bits (61), Expect = 4.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 199 VNFGLDMESRVALV-GPNGIGKSTFLNLLKGEL 230
+N D+ + L+ G G GKST L
Sbjct: 1 MNMTDDLGGNILLLSGHPGSGKSTIAEALANLP 33
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 28.7 bits (63), Expect = 2.9
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 267
++++ G GKSTF+N+LK +V+ E V +++S + + N
Sbjct: 26 KISIEGNIAAGKSTFVNILKQLC--EDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN 83
Query: 268 LLK 270
+L+
Sbjct: 84 VLQ 86
Score = 27.1 bits (59), Expect = 8.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
++++ G GKSTF+N+LK
Sbjct: 26 KISIEGNIAAGKSTFVNILKQLC 48
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.0 bits (63), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 209 VALVG-PNGIGKSTFLNLLKGE 229
+ G N +GKST + L G+
Sbjct: 4 IIFAGRSN-VGKSTLIYRLTGK 24
Score = 28.0 bits (63), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 252 VALVG-PNGIGKSTFLNLLKGE 272
+ G N +GKST + L G+
Sbjct: 4 IIFAGRSN-VGKSTLIYRLTGK 24
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 28.7 bits (65), Expect = 3.1
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 184 DVTFGYPGGKVL 195
FG G +
Sbjct: 28 GKVFGVVGREAA 39
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.0 bits (65), Expect = 3.4
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 205 MESR--VALVGPNGIGKSTFLNLLKGELTPNKGK 236
+++ + LVG G GK+ + + G
Sbjct: 920 QKTQQALILVGKAGCGKTATWKTVIDAMAIFDGH 953
Score = 28.3 bits (63), Expect = 5.3
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 248 MESR--VALVGPNGIGKSTFLNLLKGELTPNKGE 279
+++ + LVG G GK+ + + G
Sbjct: 920 QKTQQALILVGKAGCGKTATWKTVIDAMAIFDGH 953
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.8 bits (65), Expect = 3.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 184 DVTFGYPGGKVL 195
D FGYPGG +L
Sbjct: 98 DTVFGYPGGAIL 109
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.9 bits (65), Expect = 3.5
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
A P G+GK++F + L + +
Sbjct: 75 AATAPTGVGKTSFGLAMSLFLALKGKRCYV 104
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 28.6 bits (65), Expect = 3.6
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 184 DVTFGYPGGKVL 195
+ FG G +
Sbjct: 20 EHLFGLHGAHID 31
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.0 bits (62), Expect = 3.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 204 DMESRVALVGPNGIGKSTFLNLLKGELTPN 233
+ R+ L+G GKS+ ++ +++PN
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN 47
Score = 28.0 bits (62), Expect = 3.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 247 DMESRVALVGPNGIGKSTFLNLLKGELTPN 276
+ R+ L+G GKS+ ++ +++PN
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN 47
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 28.4 bits (63), Expect = 3.9
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 153 PKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALV 212
PK + ++ +++ P V L G G L + + + V +V
Sbjct: 110 PKSVKHDKVKHWMRYSAKQLGLKPEDVF-LISAAKGQ-GIAELADAIEY-YRGGKDVYVV 166
Query: 213 GPNGIGKSTFLNLLKGELTPNKGKVL 238
G +GKSTF+N + E + V+
Sbjct: 167 GCTNVGKSTFINRMIKEFSDETENVI 192
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 27.9 bits (63), Expect = 3.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 213 GPNGIGKSTFLNLLKGELTPNKGKVLL 239
GP G GKST + L L +V L
Sbjct: 13 GPEGAGKSTNRDYLAERLRERGIEVQL 39
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 28.0 bits (63), Expect = 4.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 201 FGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+ E R+ ++G + GK+T L GE
Sbjct: 13 KQKERELRLLMLGLDNAGKTTILKKFNGE 41
Score = 28.0 bits (63), Expect = 4.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+ E R+ ++G + GK+T L GE
Sbjct: 13 KQKERELRLLMLGLDNAGKTTILKKFNGE 41
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.9 bits (62), Expect = 4.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 202 GLDMESRVALVGPNGIGKSTFL 223
G + V L G G GK+TF
Sbjct: 26 GFPEGTTVLLTGGTGTGKTTFA 47
Score = 27.9 bits (62), Expect = 4.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
G + V L G G GK+TF
Sbjct: 26 GFPEGTTVLLTGGTGTGKTTFA 47
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.0 bits (61), Expect = 4.1
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 99 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE 158
+ R+E K + + + M+ + K K + + ++ EQ K + + K +
Sbjct: 104 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-KAFYQ 162
Query: 159 KPREYIV 165
+P I+
Sbjct: 163 QPDADII 169
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 28.3 bits (64), Expect = 4.1
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 184 DVTFGYPGGKVL 195
D FG PG L
Sbjct: 18 DTVFGNPGSNAL 29
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 28.3 bits (64), Expect = 4.1
Identities = 2/12 (16%), Positives = 4/12 (33%)
Query: 184 DVTFGYPGGKVL 195
+ G+ G
Sbjct: 20 EQVVGFIGHTSH 31
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 28.2 bits (64), Expect = 4.3
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 184 DVTFGYPGGKVL 195
+ F YPGG +
Sbjct: 28 ETVFAYPGGASM 39
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 28.2 bits (62), Expect = 4.3
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 52 QTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQ 111
Q+W + L D+ + KL +K Y ++ ++L
Sbjct: 72 QSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQL------- 124
Query: 112 EKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK 159
++++ + SQ + K K++ + + + RK + D + + +K
Sbjct: 125 QQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDK 172
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 4.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ + G + GK+T N L L V +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 27.8 bits (61), Expect = 4.5
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 94 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDD 151
K++Y+Q KE Y E + E + + ++ R+ K K A + +Q
Sbjct: 157 KELYIQHAKEDETRYH-NEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEECLQHHHHH 213
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 27.5 bits (61), Expect = 4.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 209 VALVGPNGIGKSTFLNLLK 227
+ + G G GKS F LLK
Sbjct: 4 ILITGMPGSGKSEFAKLLK 22
Score = 27.5 bits (61), Expect = 4.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 252 VALVGPNGIGKSTFLNLLK 270
+ + G G GKS F LLK
Sbjct: 4 ILITGMPGSGKSEFAKLLK 22
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.0 bits (62), Expect = 4.6
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGELTPN 233
+ S++ L+G +G GKS+ +++ +
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF 30
Score = 28.0 bits (62), Expect = 4.6
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKGELTPN 276
+ S++ L+G +G GKS+ +++ +
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF 30
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.3 bits (64), Expect = 4.7
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 184 DVTFGYPGGKVL 195
FG PG +
Sbjct: 43 TTAFGVPGAAIN 54
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.6 bits (62), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
+ R+ +VG + GK+T L LK
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLG 52
Score = 27.6 bits (62), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
+ R+ +VG + GK+T L LK
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLG 52
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC;
1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A
2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Length = 119
Score = 27.2 bits (59), Expect = 4.8
Identities = 11/56 (19%), Positives = 18/56 (32%)
Query: 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSH 134
+YK + Y K+L E E Q+ I + + + H H
Sbjct: 62 AEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNLEHHHH 117
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 28.1 bits (61), Expect = 5.0
Identities = 7/52 (13%), Positives = 15/52 (28%)
Query: 79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAER 130
L+ +L + QE ++ +GM+ E+
Sbjct: 192 YSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHA 243
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.6 bits (62), Expect = 5.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 205 MESRVALVGPNGIGKST 221
M + LVG G GKST
Sbjct: 1 MAPKAVLVGLPGSGKST 17
Score = 27.6 bits (62), Expect = 5.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 248 MESRVALVGPNGIGKST 264
M + LVG G GKST
Sbjct: 1 MAPKAVLVGLPGSGKST 17
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 209 VALVGPNGIGKS 220
A+VG NG GKS
Sbjct: 29 TAIVGANGSGKS 40
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 252 VALVGPNGIGKS 263
A+VG NG GKS
Sbjct: 29 TAIVGANGSGKS 40
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 27.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
V + G G GK+T+LN + N +L E V
Sbjct: 22 TVLIEGNIGSGKTTYLNHFEKYK--NDICLLTEPVE 55
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 27.9 bits (63), Expect = 6.3
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 184 DVTFGYPGGKVL 195
D +G G V
Sbjct: 24 DTIYGVVGIPVT 35
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 27.1 bits (61), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 213 GPNGIGKSTFLNLLKGELTPNKGKVLL 239
G +G GKST + LL L KV+L
Sbjct: 7 GIDGSGKSTQIQLLAQYLEKRGKKVIL 33
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.6 bits (62), Expect = 6.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 209 VALVGPNGIGKS 220
A+VGPNG GKS
Sbjct: 27 TAIVGPNGSGKS 38
Score = 27.6 bits (62), Expect = 6.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 252 VALVGPNGIGKS 263
A+VGPNG GKS
Sbjct: 27 TAIVGPNGSGKS 38
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.0 bits (61), Expect = 6.5
Identities = 7/66 (10%), Positives = 27/66 (40%)
Query: 94 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEP 153
++ Q ++ + Y+ KQ+ E + E++ + ++ + +++ E
Sbjct: 510 QRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES 569
Query: 154 KELLEK 159
+ + +
Sbjct: 570 RIMKNE 575
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 27.7 bits (60), Expect = 6.5
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 40 DLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY 97
D + V+ +D+ W L+ V + F+ DI + K L
Sbjct: 151 DTSMVVVIDDRGDVWDWNPNLIKVVPYEFFVG--IGDINSNFLAKSTPLPEQEQLIPLEI 208
Query: 98 VQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKE 155
+ + E + ++ E S S + K L + + ++ +++ KE
Sbjct: 209 PKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKE 266
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.2 bits (60), Expect = 6.6
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 48 DNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ---KRKEL 104
N+ + + L +S +I + +FT + ++K+L
Sbjct: 64 KNFFNDFLQVL-----KESGGPLNGIEIKEFS-------RCDFTKMFDYFQLQKEQKKQL 111
Query: 105 TKEYELQEKQIRE 117
T + + Q + RE
Sbjct: 112 TSQEKKQIRLERE 124
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 27.5 bits (62), Expect = 7.2
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 184 DVTFGYPGGKVL 195
D +G G +
Sbjct: 26 DTMYGVVGIPIT 37
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E +V +VG + GK+T L
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMN 39
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E +V +VG + GK+T L
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMN 39
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 26.6 bits (59), Expect = 7.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 210 ALVGPNGIGKSTFL 223
++G NG GKS+ L
Sbjct: 27 LIIGQNGSGKSSLL 40
Score = 26.6 bits (59), Expect = 7.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 253 ALVGPNGIGKSTFL 266
++G NG GKS+ L
Sbjct: 27 LIIGQNGSGKSSLL 40
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 26.8 bits (60), Expect = 7.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 205 MESRVALVGPNGIGKST 221
M + +VG G G +T
Sbjct: 1 MTEPIFMVGARGCGMTT 17
Score = 26.8 bits (60), Expect = 7.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 248 MESRVALVGPNGIGKST 264
M + +VG G G +T
Sbjct: 1 MTEPIFMVGARGCGMTT 17
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 27.0 bits (59), Expect = 7.6
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 209 VALVGPNGIGKSTF-LNLL-KGELTPNKGKVLLEKVNFGLDMESRVALVG---PNGIGKS 263
V + G IGKS L L+ +G + L++ N L G GIG
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGII 78
Query: 264 TFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
L + N+ E+ S L + + L P L
Sbjct: 79 DVPKLFGLDAVVNQHEVHLSISLVKPEKMPLLDDPLNPLYRTEIIL 124
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 27.7 bits (61), Expect = 7.9
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 26/139 (18%)
Query: 109 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQ----------KDDDDEPKELLE 158
L+ K I + + + R R++ ++ + LE
Sbjct: 29 YLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLE 88
Query: 159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME------------ 206
++ + P + P + G V + + +
Sbjct: 89 DYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMC 148
Query: 207 ----SRVALVGPNGIGKST 221
+ L G G GKS
Sbjct: 149 DLDSFFLFLHGRAGSGKSV 167
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.9 bits (59), Expect = 8.0
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
++ + G G+GK+T + + L E+V
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEV 36
Score = 26.5 bits (58), Expect = 9.9
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
++ + G G+GK+T + + L
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 26.8 bits (60), Expect = 8.1
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+L + + ++ +G + GK+T L++LK +
Sbjct: 13 VLASLGLW-NKHGKLLFLGLDNAGKTTLLHMLKND 46
Score = 26.8 bits (60), Expect = 8.1
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+L + + ++ +G + GK+T L++LK +
Sbjct: 13 VLASLGLW-NKHGKLLFLGLDNAGKTTLLHMLKND 46
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 27.6 bits (61), Expect = 8.4
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
G +S + G G GK+ ++ NK + +L
Sbjct: 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAIL 314
Score = 27.2 bits (60), Expect = 9.9
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
G +S + G G GK+ +
Sbjct: 277 GFFKDSIILATGATGTGKTLLV 298
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E R+ ++G +G GK+T L L+
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVG 30
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E R+ ++G +G GK+T L L+
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVG 30
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 27.1 bits (61), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 227 KGELTPNKGKVLLEKVNFGLDMESRVALVG-PNGIGKSTFLNLL 269
K K ++ + L ++ +VG PN +GKSTF N+L
Sbjct: 4 KKGGDGIKPPPIIGRFGTSL----KIGIVGLPN-VGKSTFFNVL 42
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 26.9 bits (60), Expect = 8.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 207 SRVALVGPNGIGKSTFL 223
+AL G G GK+ F
Sbjct: 24 FFIALTGEPGTGKTIFS 40
Score = 26.9 bits (60), Expect = 8.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 250 SRVALVGPNGIGKSTFL 266
+AL G G GK+ F
Sbjct: 24 FFIALTGEPGTGKTIFS 40
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 27.4 bits (61), Expect = 9.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 197 EKVNFGLDMESRVALVGPNGIGKS 220
G + +++GPNG GKS
Sbjct: 17 GVTKVGFGESNFTSIIGPNGSGKS 40
Score = 27.4 bits (61), Expect = 9.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 240 EKVNFGLDMESRVALVGPNGIGKS 263
G + +++GPNG GKS
Sbjct: 17 GVTKVGFGESNFTSIIGPNGSGKS 40
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 26.7 bits (60), Expect = 9.7
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 213 GPNGIGKSTFLNLLKGELTPNKGKVLL 239
G +G GK+T L L V L
Sbjct: 7 GIDGSGKTTQAKKLYEYLKQKGYFVSL 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 27.2 bits (61), Expect = 9.7
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 112 EKQIREMKSQGMSK-----EKAERQHSHKALKEQARKRVQKDDDDEPKEL------LEKP 160
+ + +S K +R+ +K A +++ + + KE+ L K
Sbjct: 285 LEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALTKS 344
Query: 161 --REYIVK 166
RE ++
Sbjct: 345 LVRERVIA 352
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 26.5 bits (59), Expect = 9.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 19 LARALFLEPTLLLLDEPTNHLDLNAVI-WLDNYLQTWKKTLLVVSH 63
+ L L + +L E T D+ V +L ++LV+SH
Sbjct: 63 VGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISH 108
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 26.9 bits (60), Expect = 9.8
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+L+ + ++ +G + GK+T L++LK +
Sbjct: 15 VLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDD 48
Score = 26.9 bits (60), Expect = 9.8
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+L+ + ++ +G + GK+T L++LK +
Sbjct: 15 VLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDD 48
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 26.4 bits (59), Expect = 9.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E +V +VG + GK+T L
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMN 44
Score = 26.4 bits (59), Expect = 9.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E +V +VG + GK+T L
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMN 44
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.0 bits (59), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
E + F + R+ LVG G GKS N + G+
Sbjct: 12 ENLYFQGESTRRLILVGRTGAGKSATGNSILGQ 44
Score = 27.0 bits (59), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
E + F + R+ LVG G GKS N + G+
Sbjct: 12 ENLYFQGESTRRLILVGRTGAGKSATGNSILGQ 44
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 27.4 bits (62), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 203 LDMESRVALV-GPNGIGKSTFL 223
L + R+ ++ GPN GKST++
Sbjct: 603 LSPQRRMLIITGPNMGGKSTYM 624
Score = 27.4 bits (62), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 246 LDMESRVALV-GPNGIGKSTFL 266
L + R+ ++ GPN GKST++
Sbjct: 603 LSPQRRMLIITGPNMGGKSTYM 624
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.0 bits (60), Expect = 9.9
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+ + G GKST + L N+ + KV
Sbjct: 28 IGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKV 61
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 10.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 287
+VG +G+GKST +N L + S R++
Sbjct: 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK 69
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.9 bits (59), Expect = 10.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E R+ LVG G GKS N + +
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRK 45
Score = 26.9 bits (59), Expect = 10.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E R+ LVG G GKS N + +
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRK 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,531,655
Number of extensions: 343651
Number of successful extensions: 1784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1705
Number of HSP's successfully gapped: 488
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)