RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2684
(356 letters)
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 79.1 bits (195), Expect = 1e-17
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 25/175 (14%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+L V F Y + +L ++F S +A GP+G GKST +LL+ P G++
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 239 LEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
++ + +E+ + +G + ++ L G ++ E
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR-------------ENLTYGLEGDYTDE 107
Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
L+ ++ ++G G +SGGQ+ R+A+A
Sbjct: 108 DLWQVLDLAF-ARSFVENMPDQLNTEVGERG----------VKISGGQRQRLAIA 151
Score = 63.0 bits (153), Expect = 4e-12
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
+ SGG R R+++ARA P +L+LDE T LD + + L + K T LV++H
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRL 198
Query: 66 SFLNNICTDIIHLD 79
S + + I ++
Sbjct: 199 STIVD-ADKIYFIE 211
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 73.0 bits (179), Expect = 2e-15
Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 39/178 (21%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
L DV + G + +++ + + L+GP+G GK+T L ++ G P++G++ +
Sbjct: 6 LVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
P KG I Q L+P
Sbjct: 65 KLVA----------------------------DPEKGIFVPPKDRDIAMVFQS--YALYP 94
Query: 302 DDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
T + + KL +P ++ ++ + GL + P R+LSGGQ+ RVAL
Sbjct: 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVALG 151
Score = 64.2 bits (156), Expect = 2e-12
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKKTL 58
+ +E SGG R RV+L RA+ +P + L+DEP ++LD + + + T
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKL 83
+ V+HDQ + I ++ L
Sbjct: 194 IYVTHDQVEAMTMGDRIAVMNRGVL 218
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 73.0 bits (179), Expect = 2e-15
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 30/181 (16%)
Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
L + D+ Y GG +L+ V+ ++++G +G GKSTFL + P++G +++
Sbjct: 3 LHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61
Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
N + G+L + R R+ QH +L
Sbjct: 62 NGQNI-------------------NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF--NL 100
Query: 300 FPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVAL 351
+ T E +M ++ L +R + L G+ A LSGGQ+ RV++
Sbjct: 101 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160
Query: 352 A 352
A
Sbjct: 161 A 161
Score = 57.9 bits (140), Expect = 3e-10
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KT 57
Q K SGG + RVS+ARAL +EP +LL DEPT+ LD V + +Q KT
Sbjct: 142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 201
Query: 58 LLVVSHDQSFLNNICTDIIHLDMKKL 83
++VV+H+ F ++ + +I L K+
Sbjct: 202 MVVVTHEMGFARHVSSHVIFLHQGKI 227
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 72.2 bits (177), Expect = 3e-15
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------------KSP 284
L V+ + ++G +G GKST + + P +G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 337
R +IG QH +L T + ++L N P ++ +R+ L + GL + P
Sbjct: 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 338 IRDLSGGQKARVALA 352
+LSGGQK RVA+A
Sbjct: 139 -SNLSGGQKQRVAIA 152
Score = 61.4 bits (149), Expect = 1e-11
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
+ SGG + RV++ARAL P +LL DE T+ LD + + L + + T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKL 83
L+++H+ + IC + + +L
Sbjct: 195 LLITHEMDVVKRICDCVAVISNGEL 219
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 68.3 bits (167), Expect = 6e-14
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
+ K+N + + L+GP+G GK+T L ++ G P +G +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 77
Query: 286 LRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPI 338
I Q ++P T E + +K+ P ++ ++ + + + P
Sbjct: 78 RNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP- 134
Query: 339 RDLSGGQKARVALA 352
LSGGQ+ RVA+A
Sbjct: 135 AQLSGGQRQRVAVA 148
Score = 65.2 bits (159), Expect = 8e-13
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLL 59
+ + SGG R RV++ARA+ +EP +LL+DEP ++LD + + ++ K T +
Sbjct: 132 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191
Query: 60 VVSHDQSFLNNICTDIIHLDMKKL 83
V+HDQ + I ++ +L
Sbjct: 192 YVTHDQVEAMTMGDRIAVMNRGQL 215
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 67.3 bits (164), Expect = 1e-13
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
V+ + +N + V VGP+G GKST L ++ G T G+L
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 286 LRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPI 338
+G Q L+P + E + +KL E ++ + L P
Sbjct: 72 RGVGMVFQS--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP- 128
Query: 339 RDLSGGQKARVALA 352
+ LSGGQ+ RVA+
Sbjct: 129 KALSGGQRQRVAIG 142
Score = 56.5 bits (136), Expect = 6e-10
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKKTL 58
++ K SGG R RV++ R L EP++ LLDEP ++LD + + + +T+
Sbjct: 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 59 LVVSHDQSFLNNICTDIIHLDMKKL 83
+ V+HDQ + I+ LD ++
Sbjct: 185 IYVTHDQVEAMTLADKIVVLDAGRV 209
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 67.9 bits (164), Expect = 2e-13
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFL------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW 54
+E+ SGG RI + LA L + E +LL+LDEPT +LD L ++ +
Sbjct: 194 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 253
Query: 55 KK---TLLVVSHDQSFLNNICTDIIHLDMK 81
K +++VSHD+ + +I + ++
Sbjct: 254 LKKIPQVILVSHDEELK-DAADHVIRISLE 282
Score = 34.7 bits (78), Expect = 0.013
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
E ++G NG GKS+ L+ + L R++ K D+ +
Sbjct: 14 HSDTVVEFK-EGINLIIGQNGSGKSSLLDAILVGLYW-------PLRIKDIKKDEFTKVG 65
Query: 299 LFPDDTPCEYLM 310
+
Sbjct: 66 ARDTYIDLIFEK 77
Score = 34.4 bits (77), Expect = 0.018
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
E ++G NG GKS+ L+ + L
Sbjct: 14 HSDTVVEFK-EGINLIIGQNGSGKSSLLDAILVGLYWPL 51
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 66.8 bits (163), Expect = 2e-13
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 43/184 (23%)
Query: 182 LHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
L +VT Y G+ L+ VN + V+++GP+G GKST LN++ P +G+V
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
++ + + EL K R +IG Q +
Sbjct: 64 IDNIKT----------------------------NDLDDDELTKIRRDKIGFVFQQF--N 93
Query: 299 LFPDDTPCE------YLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLSGGQKAR 348
L P T E + E+ R++ M L LSGGQ+ R
Sbjct: 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQR 153
Query: 349 VALA 352
VA+A
Sbjct: 154 VAIA 157
Score = 64.5 bits (157), Expect = 1e-12
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
+ SGG + RV++ARAL P ++L D+PT LD + L + KT++VV+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 64 DQSFLNNICTDIIHLD 79
D + II+L
Sbjct: 205 DINVA-RFGERIIYLK 219
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 67.2 bits (164), Expect = 2e-13
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
G +L+ +N ++ +A+ G G GK++ L L+ GEL ++G ++ S R+ Q
Sbjct: 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQ 104
Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEK------SRRQLGMFGLPSYAHTIPIR---DLSGG 344
S + P + + Y + Q + +T+ LSGG
Sbjct: 105 FS--WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162
Query: 345 QKARVALA 352
Q+AR++LA
Sbjct: 163 QRARISLA 170
Score = 62.2 bits (151), Expect = 1e-11
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTLLVVSHD 64
SGG R R+SLARA++ + L LLD P +LD+ V KT ++V+
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 65 QSFLNNICTDIIHLD 79
L I+ L
Sbjct: 218 MEHLRK-ADKILILH 231
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 66.5 bits (162), Expect = 3e-13
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---T 57
+ ++ E SGG V + RAL P ++++DEP + + N++ K T
Sbjct: 143 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT 202
Query: 58 LLVVSHDQSFLNNICTDIIHLD 79
L++ H + N + +
Sbjct: 203 FLIIEHRLDIVLNYIDHLYVMF 224
Score = 63.5 bits (154), Expect = 3e-12
Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 31/182 (17%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
+L ++ + G L+ V+ ++ ++GPNG GKST +N++ G L ++G+V
Sbjct: 4 ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 239 LEKVNFGLDMESRVALVGPNGI--------GKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
E + + + G + NLL GE+ P + L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 291 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
++ EK+ + L L +LSGGQ V
Sbjct: 123 KEEEM---------------------VEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVE 160
Query: 351 LA 352
+
Sbjct: 161 IG 162
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 66.0 bits (161), Expect = 5e-13
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
+ SGG + R+S+AR P +L+LDE T+ LDL + + L K T L+V+H
Sbjct: 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 213
Query: 66 SFLNNICTDIIHLD 79
S + + I+ ++
Sbjct: 214 STITH-ADKIVVIE 226
Score = 64.0 bits (156), Expect = 2e-12
Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 37/178 (20%)
Query: 182 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+ V+F Y + L+ +N ++ VA VG +G GKST +NL+ G++L++
Sbjct: 19 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78
Query: 241 KVN-FGLDMESRVALVG-----PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
N S +G + N+L G T E+ ++ ++
Sbjct: 79 GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM-------- 130
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ H F + P Y ++ + LSGGQK R+++A
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVK----------------------LSGGQKQRLSIA 166
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 64.6 bits (157), Expect = 1e-12
Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 27/173 (15%)
Query: 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
++ F Y V+L+ +N + + +VG +G GKST L++ P G+VL++
Sbjct: 4 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63
Query: 241 KVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
+ D VG + + L L +S I +
Sbjct: 64 GHDLALADPNWLRRQVGV--VLQDNVL-------------LNRSIIDNISLANPGMSVEK 108
Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
+ E +G G LSGGQ+ R+A+A
Sbjct: 109 VIYAAKLAGAHDFISELREGYNTIVGEQG----------AGLSGGQRQRIAIA 151
Score = 53.8 bits (129), Expect = 5e-09
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
SGG R R+++ARAL P +L+ DE T+ LD + + + K T+++++H
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL 198
Query: 66 SFLNNICTDIIHLD 79
S + N II ++
Sbjct: 199 STVKN-ADRIIVME 211
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 65.6 bits (158), Expect = 2e-12
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHDQ 65
+ G R++++ L E +LL+LDEPT +LD L ++ + K +++VSHD+
Sbjct: 285 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 344
Query: 66 SFLNNICTDIIHLDMK 81
+ +I + ++
Sbjct: 345 ELK-DAADHVIRISLE 359
Score = 30.2 bits (66), Expect = 0.41
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 210 ALVGPNGIGKSTFLN 224
++G NG GKS+ L+
Sbjct: 27 LIIGQNGSGKSSLLD 41
Score = 30.2 bits (66), Expect = 0.41
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 253 ALVGPNGIGKSTFLN 267
++G NG GKS+ L+
Sbjct: 27 LIIGQNGSGKSSLLD 41
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 63.8 bits (155), Expect = 2e-12
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLL 59
++ SGG + +++ RAL P LL++DEP+ L V + +Q + T+L
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 60 VVSHDQSFLNNICTDIIHLD 79
+V + + L+
Sbjct: 194 LVEQNALGALKVAHYGYVLE 213
Score = 63.4 bits (154), Expect = 3e-12
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------- 284
++ ++ + V L+G NG GK+T L+ + G + KG++ +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ------LGMF-GLPSYAHTIP 337
R+G G +FP+ T E LM +K + +F L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 338 IRDLSGGQKARVALA 352
LSGG++ +A+
Sbjct: 138 -GTLSGGEQQMLAIG 151
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 63.7 bits (155), Expect = 3e-12
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
SGG R R+++ARAL + +L+LDE T+ LD + + L +K T LV++H
Sbjct: 152 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 211
Query: 66 SFLNNICTDIIHLD 79
S + +I+ ++
Sbjct: 212 STIEQ-ADEIVVVE 224
Score = 63.3 bits (154), Expect = 4e-12
Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 40/203 (19%)
Query: 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRV 209
DE K ++++ + +VTF YPG +V L +N + V
Sbjct: 1 DEGKRVIDRATGDLE----------------FRNVTFTYPGREVPALRNINLKIPAGKTV 44
Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
ALVG +G GKST +L+ ++G +L++ + + L
Sbjct: 45 ALVGRSGSGKSTIASLITRFYDIDEGHILMD--------GHDLREYTLASLRNQVALVSQ 96
Query: 270 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 329
L + + + + +++S E + + + + GL
Sbjct: 97 NVHLFND----TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN----------GL 142
Query: 330 PSYAHTIPIRDLSGGQKARVALA 352
+ + LSGGQ+ R+A+A
Sbjct: 143 DTIIGENGVL-LSGGQRQRIAIA 164
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 62.4 bits (151), Expect = 7e-12
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 42/178 (23%)
Query: 182 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
+ +V+ + GKV+ L+ VN ++ R ++GP+G GK+TF+ ++ G P+ G++ +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR-IGKFDQHSGEHL 299
L + G+L P R IG Q L
Sbjct: 66 ------------------------------DRLVASNGKLIVPPEDRKIGMVFQT--WAL 93
Query: 300 FPDDTPCEYL---MKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
+P+ T E + + + ++ + + + P R+LSG Q+ RVA
Sbjct: 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVA 150
Score = 44.3 bits (104), Expect = 7e-06
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKKTLLVVS 62
+E SG + RV+LARAL +P+LLLLDEP ++LD TLLVVS
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 63 HDQSFLNNICTDIIHLDMKKL 83
HD + + I + L KL
Sbjct: 199 HDPADIFAIADRVGVLVKGKL 219
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 62.3 bits (151), Expect = 7e-12
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 30/171 (17%)
Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+ D+ G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G V +
Sbjct: 5 VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 63
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
N + L+ + N+ E S I
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------------- 110
Query: 302 DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
E R + GL + S G ++ +A
Sbjct: 111 ---------------EEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIA 145
Score = 56.5 bits (136), Expect = 7e-10
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
+S G ++ +ARAL + P L +LDEPT+ LD+ + L+ + T+LV SH
Sbjct: 132 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 191
Query: 64 DQSFLNNICTDIIHLDMKKL 83
+ + +C I + +
Sbjct: 192 NMLEVEFLCDRIALIHNGTI 211
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 62.0 bits (150), Expect = 1e-11
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIGKFD 292
V+F + + L+GP G GKS FL L+ G + P++GE+R R IG
Sbjct: 18 VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 293 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 347
Q LFP + + R + G+ P LSGG++
Sbjct: 77 QD--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQ 133
Query: 348 RVALA 352
RVALA
Sbjct: 134 RVALA 138
Score = 42.7 bits (100), Expect = 2e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTW-KKTL 58
++ SGG R RV+LARAL ++P LLLLDEP + +D ++ ++Q +
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 59 LVVSHDQSFLNNICTDIIHLD 79
L V+HD + ++ +
Sbjct: 181 LHVTHDLIEAAMLADEVAVML 201
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 61.2 bits (148), Expect = 1e-11
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
L+ ++ ++ ++GP G GK+ FL L+ G P+ G + +
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71
Query: 286 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDL 341
I Q+ LFP + L + ++ + P L
Sbjct: 72 HDIAFVYQN--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-LTL 128
Query: 342 SGGQKARVAL 351
SGG++ RVAL
Sbjct: 129 SGGEQQRVAL 138
Score = 42.7 bits (100), Expect = 2e-05
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKK 56
+ +++ SGG + RV+LARAL P +LLLDEP + LD + K
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 57 TLLVVSHDQSFLNNICTDIIHLDMKKL 83
T+L ++HDQ+ + I + KL
Sbjct: 180 TVLHITHDQTEARIMADRIAVVMDGKL 206
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 60.7 bits (147), Expect = 2e-11
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 13/128 (10%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRL 286
L ++ + + LVGPNG GKST L + G +T KG ++ + +L
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKL 70
Query: 287 RIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGG 344
+ + + YL + E G L LSGG
Sbjct: 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQLSGG 129
Query: 345 QKARVALA 352
+ RV LA
Sbjct: 130 EWQRVRLA 137
Score = 57.6 bits (139), Expect = 3e-10
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 3 EKSTKEFSGGWRIRVSLARAL-------FLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK 55
+ST + SGG RV LA + LLLLDEP N LD+ LD L
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 56 K---TLLVVSHDQSFLNNICTDIIHLDMKKL 83
+ +++ SHD + L K+
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 59.9 bits (145), Expect = 3e-11
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK------GELRKSPRLRI 288
K +LE++ ++ + V GPNGIGK+T L + L P K G + +I
Sbjct: 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 72
Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSG 343
+ + +YL + +L K + L + + +LS
Sbjct: 73 FFLPEEIIV--PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK--KLGELSQ 128
Query: 344 GQKARVAL 351
G RV L
Sbjct: 129 GTIRRVQL 136
Score = 48.4 bits (115), Expect = 3e-07
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----T 57
+K E S G RV LA L + + +LD+P +D ++ + + K
Sbjct: 119 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 58 LLVVSHDQSFLNNICTDIIH 77
++ + S+ + + +H
Sbjct: 179 IISSREELSYCDVN--ENLH 196
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 59.9 bits (145), Expect = 6e-11
Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 30/183 (16%)
Query: 176 PPPVLG---LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
P + G DV+F YP ++L+ + F L ALVGPNG GKST LL+
Sbjct: 5 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 231 TPNKGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 289
P G++LL+ + V G F L+ + G
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQ-------------ENIAYG 111
Query: 290 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
+ + E + + LP + ++ G LSGGQ+ V
Sbjct: 112 LTQKPTMEEITAAAVKSGAHSFISGLP-QGYDTEVDEAG----------SQLSGGQRQAV 160
Query: 350 ALA 352
ALA
Sbjct: 161 ALA 163
Score = 55.7 bits (134), Expect = 1e-09
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW----LDNYLQTWKKTLLVVS 62
+ SGG R V+LARAL +P +L+LD+ T+ LD N+ + L + + +++L+++
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209
Query: 63 HDQSFLNNICTDIIHLD 79
S + I+ L+
Sbjct: 210 QHLSLVEQ-ADHILFLE 225
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 49.6 bits (117), Expect = 6e-08
Identities = 9/102 (8%), Positives = 23/102 (22%), Gaps = 10/102 (9%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
++ + G G+GK+T + + L + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 311 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
K F + + + A
Sbjct: 62 KFFTSKKLVGSYGVNV----------QYFEELAIPILERAYR 93
Score = 48.8 bits (115), Expect = 1e-07
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
++ + G G+GK+T + + L E+V
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD 38
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 37.7 bits (86), Expect = 0.001
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
V LVG GKS+ L + + +G + E D P
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP 57
Score = 31.9 bits (71), Expect = 0.071
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
V LVG GKS+ L +
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRA 24
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 36.3 bits (82), Expect = 0.002
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
+V + G GKS+ LN L G ++ + R + + G L DT
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Score = 32.8 bits (73), Expect = 0.026
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
+V + G GKS+ LN L G
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGR 24
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 34.2 bits (77), Expect = 0.009
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
R+ +VG +GKST LN L E ++ + R I + G DT
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 56
Score = 33.0 bits (74), Expect = 0.021
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
R+ +VG +GKST LN L E
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNE 23
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 34.1 bits (77), Expect = 0.013
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
+ V LVG +GKST L+++ + +G + G D P
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLP 57
Score = 32.2 bits (72), Expect = 0.052
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 207 SRVALVGPNGIGKSTFLNLLKGE 229
+ V LVG +GKST L+++
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSA 24
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.8 bits (76), Expect = 0.016
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
V L GP G+GK+T ++ L + V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
Score = 30.8 bits (68), Expect = 0.18
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
V L GP G+GK+T ++ L + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.0 bits (74), Expect = 0.026
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+L K+ D E R+ L+G + GK+T L L E
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
Score = 33.0 bits (74), Expect = 0.026
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+L K+ D E R+ L+G + GK+T L L E
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.1 bits (74), Expect = 0.028
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
+ + + GP GK++ L LL +
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTD 26
Score = 33.1 bits (74), Expect = 0.028
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
+ + + GP GK++ L LL +
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTD 26
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 33.2 bits (75), Expect = 0.035
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
LL + + ++G G+GKS+ +N + GE
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 55
Score = 33.2 bits (75), Expect = 0.035
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 272
LL + + ++G G+GKS+ +N + GE
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 55
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.8 bits (73), Expect = 0.037
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI-GKFDQHSGEHLFPDDTPCE 307
+A+VG +GKST LN L G+ ++ R RI G + + + ++ D
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 64
Score = 30.8 bits (68), Expect = 0.14
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
+A+VG +GKST LN L G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 33.1 bits (75), Expect = 0.039
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
RV + GP+G+GK+T LL + + + E + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTY 42
Score = 31.5 bits (71), Expect = 0.14
Identities = 13/84 (15%), Positives = 22/84 (26%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
RV + GP+G+GK+T LL + + P
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQG 65
Query: 311 KLFNLPYEKSRRQLGMFGLPSYAH 334
++ + YA
Sbjct: 66 EISAGDAAVVMTSAQITMGMPYAV 89
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 33.1 bits (75), Expect = 0.047
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
R+ L G GIGK+T ++LL
Sbjct: 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38
Score = 30.7 bits (69), Expect = 0.23
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
R+ L G GIGK+T
Sbjct: 7 RIYLDGAYGIGKTTAAEEFLHHF 29
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.9 bits (71), Expect = 0.056
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E R+ ++G + GK+T L GE
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGE 25
Score = 31.9 bits (71), Expect = 0.056
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E R+ ++G + GK+T L GE
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGE 25
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 32.1 bits (72), Expect = 0.056
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+ L+G +G+G+ N L + P++ R K D+ +G++ +
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKH-PDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDI 64
Query: 312 LFNLPYEKSRRQLGMFGLPSY 332
N E + M+G
Sbjct: 65 SNNEYLEYGSHEDAMYGTKLE 85
Score = 27.5 bits (60), Expect = 1.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 209 VALVGPNGIGKSTFLNLL 226
+ L+G +G+G+ N L
Sbjct: 6 LVLLGAHGVGRRHIKNTL 23
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.9 bits (71), Expect = 0.065
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
V + G G+G +T L L +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34
Score = 29.6 bits (65), Expect = 0.43
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
V + G G+G +T L L + E + G +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNL---RKEGVNYKMVSFGSVMFEVAKEEN 49
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 31.6 bits (70), Expect = 0.078
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
+VA+VG +GKST N + + + + R + G DT
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Score = 31.6 bits (70), Expect = 0.084
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
+VA+VG +GKST N + +
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNK 31
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 31.7 bits (70), Expect = 0.086
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 207 SRVALVGPNGIGKSTFLNLLKGE 229
+ V +VG +GKST N L +
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKK 23
Score = 31.7 bits (70), Expect = 0.086
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 250 SRVALVGPNGIGKSTFLNLLKGE 272
+ V +VG +GKST N L +
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKK 23
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.5 bits (70), Expect = 0.094
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ G G+GKST L +K L +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34
Score = 29.2 bits (64), Expect = 0.64
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
+ G G+GKST L +K L
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEIL 25
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.2 bits (69), Expect = 0.095
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E R+ ++G +G GK+T L L+
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVG 28
Score = 31.2 bits (69), Expect = 0.095
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E R+ ++G +G GK+T L L+
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVG 28
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 31.6 bits (70), Expect = 0.099
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
+ G + +GKST + L G+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
Score = 31.6 bits (70), Expect = 0.099
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 252 VALVGPNGIGKSTFLNLLKGE 272
+ G + +GKST + L G+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.1 bits (69), Expect = 0.10
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
+A +G GK+T L L L + L K
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37
Score = 31.1 bits (69), Expect = 0.12
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
+A +G GK+T L L L + R + K H +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALC------ARGIRPGLIKHTHHDMDV 45
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 31.9 bits (72), Expect = 0.11
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
R+ L G GIGKST ++ + +
Sbjct: 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 40
Score = 30.3 bits (68), Expect = 0.32
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
R+ L G GIGKST ++
Sbjct: 8 RIYLDGVYGIGKSTTGRVMASAA 30
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 31.2 bits (70), Expect = 0.11
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
K+N + + +VG NG GK+T L V+L +
Sbjct: 3 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 48
Score = 27.4 bits (60), Expect = 2.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 241 KVNFGLDMESRVALVGPNGIGKSTFL 266
K+N + + +VG NG GK+T
Sbjct: 3 KLNVPPEPPFVIMVVGVNGTGKTTSC 28
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 32.0 bits (71), Expect = 0.12
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 197 EKVNFGLDMESRVALVGPNGIGKSTFL 223
G + +++GPNG GKS +
Sbjct: 16 GVTKVGFGESNFTSIIGPNGSGKSNMM 42
Score = 32.0 bits (71), Expect = 0.12
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFL 266
G + +++GPNG GKS +
Sbjct: 16 GVTKVGFGESNFTSIIGPNGSGKSNMM 42
Score = 29.7 bits (65), Expect = 0.59
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 13 WRIRVSLARALFL--EPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKT---LLVVSHDQSF 67
++L A+ +LDE LD+ V + Y++ + +V+S +
Sbjct: 339 TVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
Query: 68 LNN 70
Sbjct: 399 FEK 401
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.9 bits (68), Expect = 0.13
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
VA+VG +GKST LN L G
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
Score = 30.9 bits (68), Expect = 0.13
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 252 VALVGPNGIGKSTFLNLLKGE 272
VA+VG +GKST LN L G
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.16
Identities = 8/66 (12%), Positives = 19/66 (28%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
++ +G + GK+T L++LK + +
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARR 72
Query: 309 LMKLFN 314
+ K +
Sbjct: 73 VWKNYL 78
Score = 29.7 bits (65), Expect = 0.36
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
++ +G + GK+T L++LK +
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDD 36
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 30.9 bits (69), Expect = 0.17
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
V +VG NG+GK+T + L KV+ +
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 43
Score = 27.4 bits (60), Expect = 2.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 252 VALVGPNGIGKSTFL 266
V +VG NG+GK+T +
Sbjct: 9 VLVVGVNGVGKTTTI 23
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.4 bits (67), Expect = 0.17
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
++ +G + GK+T L++LK +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKND 23
Score = 30.4 bits (67), Expect = 0.17
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
++ +G + GK+T L++LK +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKND 23
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 31.3 bits (70), Expect = 0.19
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 223 LNLLKGELTPNKGKVLLEKVNFGLDMES----RVALVGPNGIGKSTFLNLLKGE 272
LNL++ + ++ ++ L VA+ G G GKS+F+N L+G
Sbjct: 26 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 79
Score = 29.7 bits (66), Expect = 0.54
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
VA+ G G GKS+F+N L+G
Sbjct: 58 NVAVTGETGSGKSSFINTLRGI 79
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 30.7 bits (68), Expect = 0.20
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 306
V L GP+G GKST L L E + S R + + G+ +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEH-SSIFGFSVSHTTRNPRPGEEDGKDYYFVTREM 56
Score = 27.6 bits (60), Expect = 1.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 209 VALVGPNGIGKSTFLNLL 226
V L GP+G GKST L L
Sbjct: 3 VVLSGPSGAGKSTLLKKL 20
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 30.3 bits (67), Expect = 0.21
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKG--ELRKSPRLRIGKFDQHSGEHLFPDDTPC 306
E ++ L+G GKST + +K G E + + K G+
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIH 61
Query: 307 EY 308
+
Sbjct: 62 CF 63
Score = 29.9 bits (66), Expect = 0.34
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
E ++ L+G GKST + +K G
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG 31
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 30.3 bits (67), Expect = 0.23
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 201 FGLDMESRVALVGPNGIGKSTFLNLLKGE 229
+G + E R+ ++G +G GK+T L L+
Sbjct: 12 WGSNKELRILILGLDGAGKTTILYRLQIG 40
Score = 30.3 bits (67), Expect = 0.23
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE 272
+G + E R+ ++G +G GK+T L L+
Sbjct: 12 WGSNKELRILILGLDGAGKTTILYRLQIG 40
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 30.4 bits (67), Expect = 0.26
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+A+ G +G GK T + L G V
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33
Score = 27.7 bits (60), Expect = 1.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
+A+ G +G GK T + L G
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAF 24
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.0 bits (66), Expect = 0.26
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
VA++G GKS +N L T R+ ++G +Q +P
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68
Query: 309 LMKLFNLPYEKSRRQLGMFGLPSYAH 334
+ + + + + + A
Sbjct: 69 RYIDYAVRHSHKIAFIDTDFITTQAF 94
Score = 29.7 bits (65), Expect = 0.35
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
VA++G GKS +N L
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVF 31
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 30.6 bits (68), Expect = 0.29
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
R+ + G G GKSTFL L KV
Sbjct: 56 RLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85
Score = 28.3 bits (62), Expect = 1.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 251 RVALVGPNGIGKSTFLNLL 269
R+ + G G GKSTFL
Sbjct: 56 RLGVTGTPGAGKSTFLEAF 74
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 30.1 bits (67), Expect = 0.32
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
LVG G GK+T L + LL
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 43
Score = 27.0 bits (59), Expect = 3.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 252 VALVGPNGIGKSTFLNLL 269
LVG G GK+T L
Sbjct: 13 WFLVGLQGSGKTTTAAKL 30
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 253 ALVGPNGIGKSTFL---NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
A+VGPNG GKS + + GE + K R +G P
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFGEQSK------KELRASEKFDMIFAGSENLPPAGSAYVE 81
Query: 310 MKLFNLPYE-KSRRQLGMFGLPSY 332
+ E R+L G +Y
Sbjct: 82 LVFEENGEEITVARELKRTGENTY 105
Score = 29.2 bits (64), Expect = 0.69
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 210 ALVGPNGIGKSTFLN 224
A+VGPNG GKS ++
Sbjct: 28 AIVGPNGSGKSNIID 42
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.6 bits (65), Expect = 0.33
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 205 MESR-VALVGPNGIGKSTFLNLLKGEL 230
M +R + L G + GKS + L+ L
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVL 27
Score = 29.6 bits (65), Expect = 0.33
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 248 MESR-VALVGPNGIGKSTFLNLLKGEL 273
M +R + L G + GKS + L+ L
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVL 27
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 29.6 bits (65), Expect = 0.36
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN-KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
+V L+G G+GKS+ + ++ PN + S + ++ + L D E
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65
Query: 309 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339
L + Y S + ++ + ++
Sbjct: 66 FRALAPMYYRGSAAAIIVYDITKEETFSTLK 96
Score = 27.3 bits (59), Expect = 2.1
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V L+G G+GKS+ + ++ PN
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDSFDPN 32
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.7 bits (65), Expect = 0.36
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
++ +VG +GKS+ + KG T + + L L DT +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 310 MKLFNLPY 317
Y
Sbjct: 64 FDAITKAY 71
Score = 28.9 bits (63), Expect = 0.54
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ +VG +GKS+ + KG T +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKD 30
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.7 bits (65), Expect = 0.36
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 208 RVALVGPNGIGKSTFLNLLKG 228
+AL G + +GKS+F+N L
Sbjct: 25 EIALAGRSNVGKSSFINSLIN 45
Score = 29.7 bits (65), Expect = 0.36
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 251 RVALVGPNGIGKSTFLNLLKG 271
+AL G + +GKS+F+N L
Sbjct: 25 EIALAGRSNVGKSSFINSLIN 45
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.9 bits (66), Expect = 0.37
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
+ + G GKS+ + L N+ + R+ + + + +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 47
Score = 28.8 bits (63), Expect = 0.83
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
+ + G GKS+ + L N+ ++V
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 38
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 29.6 bits (66), Expect = 0.37
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
+ +VG NG+GK+T + L + V+L +
Sbjct: 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 46
Score = 27.3 bits (60), Expect = 2.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 252 VALVGPNGIGKSTFL 266
+ +VG NG+GK+T +
Sbjct: 12 ILMVGVNGVGKTTTI 26
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 0.40
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
R+ +VG + GK+T L LK
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG 23
Score = 29.2 bits (64), Expect = 0.40
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
R+ +VG + GK+T L LK
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG 23
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 0.40
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E + LVG GK+TF+N++
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASG 25
Score = 29.3 bits (64), Expect = 0.40
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E + LVG GK+TF+N++
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASG 25
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.7 bits (66), Expect = 0.41
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ LVG G GK+T L KV L
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGL 45
Score = 27.0 bits (59), Expect = 3.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 252 VALVGPNGIGKSTFLNLL 269
+ LVG G GK+T L
Sbjct: 15 IMLVGVQGTGKATTAGKL 32
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 29.4 bits (64), Expect = 0.42
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 208 RVALVGPNGIGKSTFLNLLKG 228
VA G + GKS+ LN L
Sbjct: 18 EVAFAGRSNAGKSSALNTLTN 38
Score = 29.4 bits (64), Expect = 0.42
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 251 RVALVGPNGIGKSTFLNLLKG 271
VA G + GKS+ LN L
Sbjct: 18 EVAFAGRSNAGKSSALNTLTN 38
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.5 bits (65), Expect = 0.44
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
+ + GP+G GKST L L E P+ S R + + +G+ M
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEY-PDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Score = 28.0 bits (61), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
+ + GP+G GKST L L E
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEY 25
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.5 bits (65), Expect = 0.45
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 204 DMESR-VALVGPNGIGKSTFLNLLKGEL 230
D+ + L G G GKST L
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLP 28
Score = 29.5 bits (65), Expect = 0.45
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 247 DMESR-VALVGPNGIGKSTFLNLLKGEL 273
D+ + L G G GKST L
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLP 28
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.0 bits (64), Expect = 0.48
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG 245
+VG GK+T + +V K +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40
Score = 28.7 bits (63), Expect = 0.77
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 6/90 (6%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+VG GK+T + R+ R+ K H GE P+ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAV------REGWRVGTVKHHGHGGEPARPEGVDSVRHER 57
Query: 312 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 341
+ L L +
Sbjct: 58 AGAVATAVEGDGLLQLHLRRPLWRLDDVLA 87
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.2 bits (64), Expect = 0.60
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTP 232
V L GP+ +GKST + L+ +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPN 28
Score = 29.2 bits (64), Expect = 0.60
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTP 275
V L GP+ +GKST + L+ +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPN 28
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.7 bits (63), Expect = 0.69
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP-CEY 308
++ ++G + +GK++FL TP + L DT E
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 309 LMKLFNLPYEKSRRQLGMFGLPSYAHT 335
+ Y + + M+ + +
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESF 93
Score = 28.3 bits (62), Expect = 0.90
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ ++G + +GK++FL TP
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPA 33
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.8 bits (63), Expect = 0.70
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 209 VALVGPNGIGKSTFLNLLKGE 229
V VG GK+ L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG 23
Score = 28.8 bits (63), Expect = 0.70
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 252 VALVGPNGIGKSTFLNLLKGE 272
V VG GK+ L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG 23
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 29.0 bits (64), Expect = 0.75
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 198 KVNFG-LDMESRVALVG-PNGIGKSTFLNLLKGE------------LTPNKGKV 237
KV +G + +VG PN +GKSTF + + P + KV
Sbjct: 1 KVQWGRPGNNLKTGIVGMPN-VGKSTFFRAITKSVLGNPANYPYATIDPEEAKV 53
Score = 29.0 bits (64), Expect = 0.90
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 241 KVNFG-LDMESRVALVG-PNGIGKSTFLNLL 269
KV +G + +VG PN +GKSTF +
Sbjct: 1 KVQWGRPGNNLKTGIVGMPN-VGKSTFFRAI 30
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 28.8 bits (63), Expect = 0.81
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESR 251
V + G G GK+T+LN + N +L E V ++
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYK--NDICLLTEPVEKWRNVNGV 52
Score = 28.1 bits (61), Expect = 1.4
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
V + G G GK+T+LN + + L + + E ++ D +
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYK-NDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQ 70
Query: 312 LFNLPYEKSRRQLGMFGLPSYAHTIPIRD 340
+
Sbjct: 71 SYVTLTMLQSHTAPTNKKLKIMERSIFSA 99
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.4 bits (62), Expect = 0.82
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E +V +VG + GK+T L
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMN 38
Score = 28.4 bits (62), Expect = 0.82
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E +V +VG + GK+T L
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMN 38
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 28.7 bits (63), Expect = 0.95
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
+ + G + GK+T N+L +L PN L+ R + + +
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHL 65
Query: 312 LFNLPYEKSRRQLGMF 327
LF+ + ++
Sbjct: 66 LFSANRWEIVDKIKKD 81
Score = 26.4 bits (57), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPN 233
+ + G + GK+T N+L +L PN
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKLQPN 30
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.7 bits (63), Expect = 0.98
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
RV + G G+GKST ++ L LT ++ + D S
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAG------HKVAVLAVDPSSTRT 94
Score = 27.9 bits (61), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
RV + G G+GKST ++ L LT KV
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKV 82
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 28.4 bits (62), Expect = 1.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNK----GELRKSPRLRIGKFDQHSGEHLFPDDTPC 306
+ + G G GK++ ++ EL + G+L K + + D
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR 66
Score = 25.7 bits (55), Expect = 6.6
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
+ + G G GK++ ++ EL
Sbjct: 7 NILITGTPGTGKTSMAEMIAAEL 29
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 28.6 bits (63), Expect = 1.0
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 208 RVALVGPNGIGKSTFLNLLK-GELTPNKG----KVLLEKVNF 244
R+ L+G GKST + ++ + G K ++KVNF
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNF 49
Score = 27.4 bits (60), Expect = 2.0
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 251 RVALVGPNGIGKSTFLNLLK-GELTPNKG 278
R+ L+G GKST + ++ + G
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.1 bits (61), Expect = 1.1
Identities = 6/27 (22%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V ++G +G+GK++ +N + + +
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQ 30
Score = 28.1 bits (61), Expect = 1.1
Identities = 6/27 (22%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V ++G +G+GK++ +N + + +
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQ 30
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.0 bits (61), Expect = 1.2
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
+ ++G G GKS L+ ++ + + L DT
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62
Score = 26.8 bits (58), Expect = 2.8
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+ ++G G GKS L+ ++ + +
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDD 33
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 1.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
+V L+G G+GKS + G
Sbjct: 3 KVLLLGAPGVGKSALARIFGGV 24
Score = 28.2 bits (61), Expect = 1.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
+V L+G G+GKS + G
Sbjct: 3 KVLLLGAPGVGKSALARIFGGV 24
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.8 bits (61), Expect = 1.2
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ L+G +G+GKS L ++ + P+
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPS 30
Score = 27.8 bits (61), Expect = 1.2
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ L+G +G+GKS L ++ + P+
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPS 30
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 1.2
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 212 VGPNGIGKSTFLNLLKG----------ELTPNKGK-VLLEKVNFGLDMESR-VALVGPNG 259
VG G + F L+G +T K K V + V D E R + + G G
Sbjct: 1 VGQGEFGGAPFKRFLRGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATG 60
Query: 260 IGKSTFLNLL 269
GKS L L
Sbjct: 61 TGKSVLLREL 70
Score = 28.4 bits (62), Expect = 1.7
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 191 GGKVLLEKVNFGLDMESR-VALVGPNGIGKSTFLNLL 226
+V + V D E R + + G G GKS L L
Sbjct: 34 AKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLREL 70
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 1.3
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ +G +G+GK+TFL + P
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPK 33
Score = 27.9 bits (61), Expect = 1.3
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ +G +G+GK+TFL + P
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPK 33
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.1 bits (61), Expect = 1.3
Identities = 5/27 (18%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V ++G +G+GK++ ++ + + +
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQ 30
Score = 28.1 bits (61), Expect = 1.3
Identities = 5/27 (18%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V ++G +G+GK++ ++ + + +
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQ 30
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 9/100 (9%)
Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
RV LVG G+ S + + E R + F P+ ++
Sbjct: 2 RVGLVGWRGMVGSVLMQRMVEE--------RDFDLIEPVFFSTSQIGVPAPNFGKDAGML 53
Query: 311 KLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARV 349
+ + Y + G K
Sbjct: 54 HDAFDIESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYW 93
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.4 bits (62), Expect = 1.4
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 253 ALVGPNGIGKSTFL---NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
A+VG NG GKS + G L+ +R S + + + +
Sbjct: 30 AIVGANGSGKSNIGDAILFVLGGLSA--KAMRASRISDLIFAGSKNEPPAKYAEVAIYFN 87
Query: 310 MKLFNLPYEKSRRQL 324
+ P ++ +
Sbjct: 88 NEDRGFPIDEDEVVI 102
Score = 28.0 bits (61), Expect = 1.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 210 ALVGPNGIGKSTFL 223
A+VG NG GKS
Sbjct: 30 AIVGANGSGKSNIG 43
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 28.1 bits (62), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 209 VALVGPNGIGKSTFLNLLKG 228
VA+VG GKS +N L G
Sbjct: 35 VAIVGLYRTGKSYLMNKLAG 54
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.2 bits (62), Expect = 1.4
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 7/119 (5%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGK----VLLEKVNFGLDMESRVALVGPNGIGKST 264
+ GP G GKS + L G +F L E ++ L N K+
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL---NEQFKNN 86
Query: 265 FLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 323
L +G + +L + I ++H + + K ++
Sbjct: 87 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKI 145
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.9 bits (61), Expect = 1.5
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ ++G +G+GKS+ L P
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPE 35
Score = 27.9 bits (61), Expect = 1.5
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ ++G +G+GKS+ L P
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPE 35
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 28.3 bits (62), Expect = 1.5
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 13/53 (24%)
Query: 251 RVALVG-PNGIGKSTFLNLLKG-----------ELTPNKGELRKSPRLRIGKF 291
+ +VG PN +GKSTF + + N G +
Sbjct: 2 EIGVVGKPN-VGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKEL 53
Score = 28.0 bits (61), Expect = 2.0
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 208 RVALVG-PNGIGKSTFLNLL 226
+ +VG PN +GKSTF +
Sbjct: 2 EIGVVGKPN-VGKSTFFSAA 20
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 1.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGELTPN 233
E R+ ++G + GK+T L LK +
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVT 39
Score = 27.6 bits (60), Expect = 1.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPN 276
E R+ ++G + GK+T L LK +
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVT 39
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.5 bits (60), Expect = 1.6
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ L+G G+GK+ + +G P
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPG 33
Score = 27.5 bits (60), Expect = 1.6
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ L+G G+GK+ + +G P
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPG 33
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
RV L+G G+GKST N+ G
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGV 26
Score = 27.8 bits (60), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
RV L+G G+GKST N+ G
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGV 26
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.0 bits (61), Expect = 1.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNK 234
V VG G GK+T L N
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNY 28
Score = 28.0 bits (61), Expect = 1.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNK 277
V VG G GK+T L N
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNY 28
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 27.6 bits (60), Expect = 1.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGEL 230
M + +VG G G +T L L
Sbjct: 1 MTEPIFMVGARGCGMTTVGRELARAL 26
Score = 27.6 bits (60), Expect = 1.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKGEL 273
M + +VG G G +T L L
Sbjct: 1 MTEPIFMVGARGCGMTTVGRELARAL 26
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 26.3 bits (58), Expect = 1.8
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 90 FTLFKKMYVQKRKELTKEYELQEKQI------REMKSQGMSKEKAE 129
F + +R E+ + L E+Q+ R MK + ++K++A+
Sbjct: 32 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 1.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
+ +VG GK+ L L
Sbjct: 5 IVMVGLPARGKTYISKKLTRYL 26
Score = 27.6 bits (60), Expect = 1.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
+ +VG GK+ L L
Sbjct: 5 IVMVGLPARGKTYISKKLTRYL 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 1.9
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 205 MES-RVALVGPNGIGKSTFLN-LLKGELTPN 233
M++ + +VG +GK+ L +
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSE 31
Score = 27.7 bits (60), Expect = 1.9
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 248 MES-RVALVGPNGIGKSTFLN-LLKGELTPN 276
M++ + +VG +GK+ L +
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSE 31
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.7 bits (60), Expect = 1.9
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 196 LEKVNFG------LDMESRV-ALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
L +N+ D++ V L G NG GKST + L P+ +
Sbjct: 7 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 59
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 239 LEKVNFG------LDMESRV-ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
L +N+ D++ V L G NG GKST + L P+ L G
Sbjct: 7 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGAT 66
Query: 292 D 292
Sbjct: 67 S 67
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 2.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 206 ESRVALVGPNGIGKSTFLNLLKGE 229
E ++ L+G GKSTF+ ++
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII 25
Score = 27.6 bits (60), Expect = 2.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 249 ESRVALVGPNGIGKSTFLNLLKGE 272
E ++ L+G GKSTF+ ++
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII 25
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 206 ESRVALVGPNGIGKSTFLN-LLKGELTPN 233
+ RVA+ G G+GKS+ + +KG +
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES 30
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 249 ESRVALVGPNGIGKSTFLN-LLKGELTPN 276
+ RVA+ G G+GKS+ + +KG +
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES 30
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 2.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
+ + G + GK+T N L L
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTL 46
Score = 27.4 bits (59), Expect = 2.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
+ + G + GK+T N L L
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTL 46
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.3 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
+ LVG G GKST L L
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKAL 25
Score = 27.3 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
+ LVG G GKST L L
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKAL 25
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V LVG +G+GK+ L G
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAG 34
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V LVG +G+GK+ L G
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAG 34
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 2.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 206 ESRVALVGPNGIGKSTFLN-LLKGELTPN 233
E ++A+ G G+GKS + L
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE 30
Score = 26.9 bits (58), Expect = 2.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 249 ESRVALVGPNGIGKSTFLN-LLKGELTPN 276
E ++A+ G G+GKS + L
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE 30
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 2.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 208 RVALVGPNGIGKSTFLNLLK 227
++ L+G GKSTFL ++
Sbjct: 4 KILLLGAGESGKSTFLKQMR 23
Score = 27.2 bits (59), Expect = 2.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 251 RVALVGPNGIGKSTFLNLLK 270
++ L+G GKSTFL ++
Sbjct: 4 KILLLGAGESGKSTFLKQMR 23
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.9 bits (58), Expect = 2.7
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ L+G +GKS+ + + + N
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAEN 31
Score = 26.9 bits (58), Expect = 2.7
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ L+G +GKS+ + + + N
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAEN 31
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ LVG G GK+TF+ L GE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKK 31
Score = 26.9 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ LVG G GK+TF+ L GE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKK 31
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.9 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGEL 230
M+ + GP G+GKST L +L
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRLAAQL 26
Score = 26.9 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 248 MESRVALVGPNGIGKSTFLNLLKGEL 273
M+ + GP G+GKST L +L
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRLAAQL 26
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.2 bits (59), Expect = 2.9
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
L G G GK++ + + E
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEET 56
Score = 27.2 bits (59), Expect = 2.9
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
L G G GK++ + + E
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEET 56
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 3.0
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ +VG + GK+ L+ K N
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPEN 30
Score = 26.9 bits (58), Expect = 3.0
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ +VG + GK+ L+ K N
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPEN 30
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 3.0
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ L+G +G+GK+ L +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNST 34
Score = 26.6 bits (58), Expect = 3.0
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ L+G +G+GK+ L +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNST 34
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 26.8 bits (58), Expect = 3.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ L G + GKST L L + L
Sbjct: 6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 36
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.9 bits (58), Expect = 3.1
Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ ++G + +GK+ G
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDR 30
Score = 26.9 bits (58), Expect = 3.1
Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ ++G + +GK+ G
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDR 30
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 3.1
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
+V L+G +GK++ + + + + L +L DT +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Score = 26.4 bits (57), Expect = 4.5
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V L+G +GK++ + + +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDK 31
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 27.2 bits (60), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 205 MESRVALVG-PNGIGKSTFLNLL 226
M + +VG PN +GKST N L
Sbjct: 1 MGFKCGIVGLPN-VGKSTLFNAL 22
Score = 27.2 bits (60), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 248 MESRVALVG-PNGIGKSTFLNLL 269
M + +VG PN +GKST N L
Sbjct: 1 MGFKCGIVGLPN-VGKSTLFNAL 22
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 3.2
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 205 MESRVALVGPNGIGKSTFLN-LLKGELTPN 233
+ ++ +VG GK+ L K +
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV 30
Score = 26.9 bits (58), Expect = 3.2
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 248 MESRVALVGPNGIGKSTFLN-LLKGELTPN 276
+ ++ +VG GK+ L K +
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV 30
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 27.0 bits (60), Expect = 3.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 48 DNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
N+ + W+K + + NI T++ D ++ Y FK + RK+++KE
Sbjct: 76 KNFFKDWRKEM------TNEEKNIITNLSKCDFTQMSQY------FKAQ-TEARKQMSKE 122
Query: 108 YELQEKQIRE 117
+L+ K+ E
Sbjct: 123 EKLKIKEENE 132
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 26.8 bits (58), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V L+G +G+GKS L+ + E
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLE 32
Score = 26.8 bits (58), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V L+G +G+GKS L+ + E
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLE 32
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 3.5
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 287
+ P+G GKS+ + L ++ S R
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR 40
Score = 26.3 bits (57), Expect = 5.0
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 209 VALVGPNGIGKSTFLNLL 226
+ P+G GKS+ + L
Sbjct: 5 YIVSAPSGAGKSSLIQAL 22
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.4 bits (57), Expect = 3.5
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V +VG G+GKS + E +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVED 32
Score = 26.4 bits (57), Expect = 3.5
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V +VG G+GKS + E +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVED 32
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.5 bits (57), Expect = 3.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 206 ESRVALVGPNGIGKSTFLN-LLKGELTPN 233
E ++ +VG G+GKS L++
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE 31
Score = 26.5 bits (57), Expect = 3.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 249 ESRVALVGPNGIGKSTFLN-LLKGELTPN 276
E ++ +VG G+GKS L++
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE 31
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.6 bits (57), Expect = 3.9
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ +VG G+GKS ++ +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSD 34
Score = 26.6 bits (57), Expect = 3.9
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ +VG G+GKS ++ +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSD 34
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.6 bits (57), Expect = 3.9
Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++A++G +GKS+ ++G+ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDS 32
Score = 26.6 bits (57), Expect = 3.9
Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++A++G +GKS+ ++G+ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDS 32
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 4.0
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 48 DNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ---KRKEL 104
N+ + + L LN I +I + +FT + ++K+L
Sbjct: 64 KNFFNDFLQVL---KESGGPLNGI--EIKEFS-------RCDFTKMFDYFQLQKEQKKQL 111
Query: 105 TKEYELQEKQIREM 118
T + + Q + RE
Sbjct: 112 TSQEKKQIRLEREK 125
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.5 bits (57), Expect = 4.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
L+G +G GKS + + +L
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQL 30
Score = 26.5 bits (57), Expect = 4.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
L+G +G GKS + + +L
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQL 30
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 26.7 bits (58), Expect = 4.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
++ +VG GKS+ L + G
Sbjct: 26 QIVVVGSQSSGKSSVLENIVGR 47
Score = 26.7 bits (58), Expect = 4.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
++ +VG GKS+ L + G
Sbjct: 26 QIVVVGSQSSGKSSVLENIVGR 47
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 26.5 bits (57), Expect = 4.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
R+++ G +GKSTF+ LL + V E V
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTY--PEWHVATEPVAT 38
Score = 26.5 bits (57), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
R+++ G +GKSTF+ LL
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTY 26
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 4.4
Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ +G +GK++ + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNT 28
Score = 26.5 bits (57), Expect = 4.4
Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ +G +GK++ + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNT 28
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.4 bits (57), Expect = 4.5
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V ++G G+GKS + G
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEK 31
Score = 26.4 bits (57), Expect = 4.5
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V ++G G+GKS + G
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEK 31
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.4 bits (57), Expect = 4.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 185 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
V+ G L E G +S + G G GK+ +
Sbjct: 8 VSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLV 43
Score = 26.1 bits (56), Expect = 6.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
G +S + G G GK+ +
Sbjct: 22 GFFKDSIILATGATGTGKTLLV 43
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.5 bits (57), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
++++ G GKSTF+N+LK
Sbjct: 4 KISIEGNIAAGKSTFVNILKQLC 26
Score = 26.5 bits (57), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
++++ G GKSTF+N+LK
Sbjct: 4 KISIEGNIAAGKSTFVNILKQLC 26
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 4.8
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+ ++G G+GKS L+ + + +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMAD 32
Score = 26.4 bits (57), Expect = 4.8
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+ ++G G+GKS L+ + + +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMAD 32
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.4 bits (57), Expect = 4.8
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ L+G +G+GKS L T +
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTND 34
Score = 26.4 bits (57), Expect = 4.8
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ L+G +G+GKS L T +
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTND 34
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.1 bits (56), Expect = 4.9
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+V L+G G+GKS+ +N + +
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQ 34
Score = 26.1 bits (56), Expect = 4.9
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+V L+G G+GKS+ +N + +
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQ 34
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.1 bits (56), Expect = 5.4
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+ +VG +GK+ L
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGE 33
Score = 26.1 bits (56), Expect = 5.4
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+ +VG +GK+ L
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGE 33
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.2 bits (56), Expect = 5.4
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ +VG G+GKS + P+
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPD 32
Score = 26.2 bits (56), Expect = 5.4
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ +VG G+GKS + P+
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPD 32
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.0 bits (56), Expect = 5.6
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+ ++G G+GKS L P
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPV 31
Score = 26.0 bits (56), Expect = 5.6
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+ ++G G+GKS L P
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPV 31
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.1 bits (56), Expect = 5.7
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
+ +VG +GK+ L
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEE 37
Score = 26.1 bits (56), Expect = 5.7
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
+ +VG +GK+ L
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEE 37
>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus
[TaxId: 1396]}
Length = 245
Score = 26.2 bits (57), Expect = 5.8
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 128 AERQH-----SHKALKEQARKRVQKDDDDEPKELLEKPREYIVKF 167
AE +H SH + +A + ++ ++ + + E+ +
Sbjct: 3 AEDKHKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTEL 47
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.2 bits (56), Expect = 5.8
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
R+ +VG G+GKS ++ +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTD 33
Score = 26.2 bits (56), Expect = 5.8
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
R+ +VG G+GKS ++ +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTD 33
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.7 bits (55), Expect = 6.0
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ ++G G+GKS ++G
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEK 31
Score = 25.7 bits (55), Expect = 6.0
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ ++G G+GKS ++G
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEK 31
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 26.5 bits (57), Expect = 6.1
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 15/120 (12%)
Query: 52 QTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT-------LFKKMYVQKRKEL 104
L ++ + + L F LF L
Sbjct: 353 SDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTL 412
Query: 105 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYI 164
++++ E + Q + E + E Q DD E LL+ +Y
Sbjct: 413 DYA---EQQRWLEHRRQVFTPEFLQ-----GYADELQMLVQQYADDKEKVALLKALWQYA 464
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 26.0 bits (56), Expect = 6.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
+ + G G GK+T N++ L + ++
Sbjct: 5 IVIEGLEGAGKTTARNVVVETLEQLGIRDMV 35
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.8 bits (55), Expect = 6.5
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 208 RVALVGPNGIGKSTFLN-LLKGELTPN 233
++ L+G + +GKS+ + +KG+
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEF 34
Score = 25.8 bits (55), Expect = 6.5
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 251 RVALVGPNGIGKSTFLN-LLKGELTPN 276
++ L+G + +GKS+ + +KG+
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEF 34
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 25.7 bits (55), Expect = 6.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 206 ESRVALVGPNGIGKSTFLN 224
E R+ ++G GKS+ ++
Sbjct: 5 ELRLGVLGDARSGKSSLIH 23
Score = 25.7 bits (55), Expect = 6.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 249 ESRVALVGPNGIGKSTFLN 267
E R+ ++G GKS+ ++
Sbjct: 5 ELRLGVLGDARSGKSSLIH 23
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.2 bits (55), Expect = 6.9
Identities = 5/65 (7%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 103 ELTKE-YELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPR 161
E+ K + +++ + + +K R + ++ + +++ + + + +
Sbjct: 17 EIVKYTKIIAMEKLYAVFTDY-EHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESF 75
Query: 162 EYIVK 166
+ K
Sbjct: 76 NIVAK 80
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.0 bits (56), Expect = 7.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 208 RVALVGPNGIGKSTFLNLLKGE 229
++A+VG GKS+ L G
Sbjct: 28 QIAVVGGQSAGKSSVLENFVGR 49
Score = 26.0 bits (56), Expect = 7.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 251 RVALVGPNGIGKSTFLNLLKGE 272
++A+VG GKS+ L G
Sbjct: 28 QIAVVGGQSAGKSSVLENFVGR 49
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.5 bits (54), Expect = 7.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 205 MESRVALVGPNGIGKSTFLNLL 226
M+ + +G G GKST+
Sbjct: 1 MKKIILTIGCPGSGKSTWAREF 22
Score = 25.5 bits (54), Expect = 7.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 248 MESRVALVGPNGIGKSTFLNLL 269
M+ + +G G GKST+
Sbjct: 1 MKKIILTIGCPGSGKSTWAREF 22
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.9 bits (55), Expect = 7.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 202 GLDMESRVALVGPNGIGKSTFL 223
G++ S + G GK+
Sbjct: 19 GIETGSITEMFGEFRTGKTQIC 40
Score = 25.9 bits (55), Expect = 7.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
G++ S + G GK+
Sbjct: 19 GIETGSITEMFGEFRTGKTQIC 40
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 7.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
V VG G GKSTF+
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSA 38
Score = 25.6 bits (55), Expect = 7.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
V VG G GKSTF+
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSA 38
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.5 bits (54), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 208 RVALVGPNGIGKSTFLNLLKGEL 230
+ LVGP G GKST L +L
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQL 26
Score = 25.5 bits (54), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 251 RVALVGPNGIGKSTFLNLLKGEL 273
+ LVGP G GKST L +L
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQL 26
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 25.6 bits (55), Expect = 7.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 209 VALVGPNGIGKSTFLNLLKGEL 230
+ +G G GKST L +L
Sbjct: 3 IVFIGFMGSGKSTLARALAKDL 24
Score = 25.6 bits (55), Expect = 7.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 252 VALVGPNGIGKSTFLNLLKGEL 273
+ +G G GKST L +L
Sbjct: 3 IVFIGFMGSGKSTLARALAKDL 24
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 24.0 bits (52), Expect = 7.6
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 90 FTLFKKMYVQKRKELTKEYELQEKQI------REMKSQGMSKEKAERQ 131
F V R+ L + +L E +I R K + K + +R+
Sbjct: 20 FERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 67
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 25.3 bits (55), Expect = 8.5
Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 33/141 (23%)
Query: 209 VALVGPNGIGKSTF-LNLLKGELTPNKGKVLL--EKVNFGLDMESRVALVGPNGIGKSTF 265
V + G +GIGKS L L+K +G L+ + V + + P
Sbjct: 18 VLITGDSGIGKSETALELIK------RGHRLVADDNVEIREISKDELIGRAP-------- 63
Query: 266 LNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 325
+L + E+R L I G + + L N EK ++G
Sbjct: 64 ------KLIEHLLEIR---GLGIINVMTLFGAGSILTEKRLRLNIHLENWHKEKLYDRVG 114
Query: 326 M-------FGLPSYAHTIPIR 339
+ TIP+R
Sbjct: 115 LNEETLRILDTEITKKTIPVR 135
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
[TaxId: 727]}
Length = 205
Score = 25.6 bits (55), Expect = 9.0
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 11/130 (8%)
Query: 205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKST 264
M V L G G GK+T NL + G L D+ +R +V + S
Sbjct: 1 MTYIVGLTGGIGSGKTTIANLFT-----DLGVPL-----VDADVVAR-EVVAKDSPLLSK 49
Query: 265 FLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 324
+ ++ +GEL ++ L P L + + L
Sbjct: 50 IVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTL 109
Query: 325 GMFGLPSYAH 334
+ L
Sbjct: 110 FVVPLLIENK 119
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 25.4 bits (54), Expect = 9.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 202 GLDMESRVALVGPNGIGKSTFL 223
G++ S L G GKS
Sbjct: 30 GVETGSITELFGEFRTGKSQLC 51
Score = 25.4 bits (54), Expect = 9.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
G++ S L G GKS
Sbjct: 30 GVETGSITELFGEFRTGKSQLC 51
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.8 bits (55), Expect = 9.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 202 GLDMESRVALVGPNGIGKSTFL 223
+ + ALV P G GKS
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLA 46
Score = 25.8 bits (55), Expect = 9.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 245 GLDMESRVALVGPNGIGKSTFL 266
+ + ALV P G GKS
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLA 46
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 155
Score = 25.2 bits (55), Expect = 9.5
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 124 SKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP 170
+ +++ EQ+ +EL E Y KF F
Sbjct: 60 PSPSINSDFARRSVSEQSTA-FATTSASALQELAEWNVLYKKKFGFI 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,347,613
Number of extensions: 67547
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 370
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)