BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2685
(992 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 158/326 (48%), Gaps = 38/326 (11%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G +++W+Y + E PVR F ++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + + H DYIR+ H P++LS SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RNCI-CVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182
+ GH H+VMC F+P D S LD+T++VW + G N G +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQE--- 184
Query: 183 IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE--VIVSNAEDKSIRLWDMTKRTCLNT 240
RG V+ V ++P + +++ ++D +I++WD ++C+ T
Sbjct: 185 -----------------RG----VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 241 FRREQERFWSEV-------IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT-- 291
V I+S +ED ++++W+ + T ER W + HPT
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Query: 292 LNLFAAGHDAGMVVFKFERERPAYTV 317
N A+G D G V + P ++
Sbjct: 284 KNYIASGFDNGFTVLSLGNDEPTLSL 309
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 38/326 (11%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G ++LW+Y + E PVR F ++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + + H DYIR+ H P++LS SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RNCI-CVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182
+ GH H+VMC F+P D S LD+T++VW + G N G +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQE--- 184
Query: 183 IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE--VIVSNAEDKSIRLWDMTKRTCLNT 240
RG V+ V ++P + +++ ++D +I++WD ++C+ T
Sbjct: 185 -----------------RG----VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 241 FRREQERFWSEV-------IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT-- 291
V I+S +ED ++++W+ + T ER W + HPT
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Query: 292 LNLFAAGHDAGMVVFKFERERPAYTV 317
N A+G D G V + P ++
Sbjct: 284 KNYIASGFDNGFTVLSLGNDEPTLSL 309
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 38/317 (11%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G ++LW+Y + E PVR F ++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + + H DYIR+ H P++LS SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RNCI-CVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182
+ GH H+VMC F+P D S LD+T++VW + G N G +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQE--- 184
Query: 183 IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE--VIVSNAEDKSIRLWDMTKRTCLNT 240
RG V+ V ++P + +++ ++D +I++WD ++C+ T
Sbjct: 185 -----------------RG----VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 241 FRREQERFWSEV-------IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT-- 291
V I+S +ED ++++W+ + T ER W + HPT
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Query: 292 LNLFAAGHDAGMVVFKF 308
N A+G D G V
Sbjct: 284 KNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 38/317 (11%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G ++LW+Y + E PVR F ++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + + H DYIR+ H P++LS SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RNCI-CVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182
+ GH H+VMC F+P D S LD+T++VW + G N G +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFTLTTGQE--- 184
Query: 183 IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE--VIVSNAEDKSIRLWDMTKRTCLNT 240
RG V+ V ++P + +++ ++D +I++WD ++C+ T
Sbjct: 185 -----------------RG----VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 241 FRREQERFWSEV-------IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT-- 291
V I+S +ED ++++W+ + T ER W + HPT
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Query: 292 LNLFAAGHDAGMVVFKF 308
N A+G D G V
Sbjct: 284 KNYIASGFDNGFTVLSL 300
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 40/325 (12%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+ E S+ V+G++F P I S+ + ++LW+ R LL+ H V G+ F
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ 123
S DD +K+WN + + + TL GH +R F + I SASDD+T+++WN +
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 124 SRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV----------- 172
+ + LTGH+ V F P + SAS D+T+++W+ +G + +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 187
Query: 173 -AP-----GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKS 226
+P +DD+ +KLW N + GH ++V V F P + I S ++DK+
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 227 IRLWDMTKR---------TCLN--TFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNT 275
++LW+ + + +N FR + + I S ++DK+++LW+ + L T
Sbjct: 245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPD-----GQTIASASDDKTVKLWNRNGQ-LLQT 298
Query: 276 FRREQERFWVLVAHPTLNLFAAGHD 300
W + P A+ D
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASD 323
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 137/290 (47%), Gaps = 31/290 (10%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L S+ V G++F P I S+ + ++LW+ R LL+ H VRG+ F
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 230
Query: 61 NQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120
S DD +K+WN + + + TL GH + F + I SASDD+T+++W
Sbjct: 231 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 121 NWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV-------- 172
N ++ + LTGH+ V F P + SAS D+T+++W+ +G + +
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348
Query: 173 ----AP-----GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
+P +DD+ +KLW N + GH ++V V F P + I S ++
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 224 DKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDKSIRLWD 266
DK+++LW+ + L T W + I S ++DK+++LW+
Sbjct: 406 DKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 31/290 (10%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L S+ V G++F P I S+ + ++LW+ R L+ H V G+ F
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFS 353
Query: 61 NQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120
S DD +K+WN + + + TL GH +R F + I SASDD+T+++W
Sbjct: 354 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 121 NWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG------------LR 168
N ++ + LTGH+ V F P D + SAS D+T+++W+ +G +R
Sbjct: 413 N-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471
Query: 169 KKNVAP-----GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
+P +DD+ +KLW N + GH ++V V F P + I S ++
Sbjct: 472 GVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASD 528
Query: 224 DKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWD 266
DK+++LW+ + L T W + I S + DK+++LW+
Sbjct: 529 DKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 49/296 (16%)
Query: 17 FHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIK 76
FHP ++S+ + I++WDY H V+ I F + + S D IK
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNH 136
+W+++ +CI T+ GH + + I+SAS D+TI++W Q+ C+ TGH
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235
Query: 137 YVMCAQFHPTDDIVVSASLDQTIRVWDISG------LR---------------------- 168
+V + + ++ S S DQT+RVW ++ LR
Sbjct: 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 169 ------KKNVAPG----MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI 218
KK+ PG G+ D+ IK+W ++ + GH N V VLFH + I
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFI 353
Query: 219 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEV--------IVSNAEDKSIRLWD 266
+S A+DK++R+WD + C+ T E F + + +V+ + D+++++W+
Sbjct: 354 LSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 47/294 (15%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109
H PV + FH + VS +D IKVW+Y+ TL GH D ++ F H +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI----- 164
S S D TI++W++Q CI + GH+H V P D +VSAS D+TI++W++
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 165 ----SGLRK--KNVAPGMG-------ADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLF 211
+G R+ + V P ++D+ +++W + +K + ++ R H + V C+ +
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAEL-REHRHVVECISW 284
Query: 212 HPKSE--------------------VIVSNAEDKSIRLWDMTKRTCLNTF-------RRE 244
P+S ++S + DK+I++WD++ CL T R
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344
Query: 245 QERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ I+S A+DK++R+WD + C+ T + L H T G
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 40/258 (15%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V+ +SF + S + I+LWD++ + H+ V + VS
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D IK+W + C+ T GH +++R + + I S S+DQT+R+W ++ C L
Sbjct: 213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 132 TGHNHYVMCAQFHPTDD--------------------IVVSASLDQTIRVWDISG----- 166
H H V C + P ++S S D+TI++WD+S
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 167 --LRKKNVAPGM-----------GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP 213
+ N G+ ADD+ +++W + + + H + V+ + FH
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHK 390
Query: 214 KSEVIVSNAEDKSIRLWD 231
+ +V+ + D+++++W+
Sbjct: 391 TAPYVVTGSVDQTVKVWE 408
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 37/200 (18%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
+ L GH + FH + ++SAS+D TI++W++++ + L GH V F +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
++ S S D TI++WD G + GH +NV
Sbjct: 162 GKLLASCSADMTIKLWDFQGFEC--------------------------IRTMHGHDHNV 195
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW---------SEVIVSNA 257
S V P + IVS + DK+I++W++ C+ TF +E W +I S +
Sbjct: 196 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCS 253
Query: 258 EDKSIRLWDMTKRTCLNTFR 277
D+++R+W + + C R
Sbjct: 254 NDQTVRVWVVATKECKAELR 273
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 114 bits (286), Expect = 2e-25, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 139/309 (44%), Gaps = 38/309 (12%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 195
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 196 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG--- 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 299 HDAGMVVFK 307
+D + +FK
Sbjct: 304 NDKTIKLFK 312
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 113
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 174 GLCRIWDTASGQCLKTL 190
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 198
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 199 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 116
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 177 GLCRIWDTASGQCLKTL 193
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 259
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 195
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 196 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 113
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 174 GLCRIWDTASGQCLKTL 190
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI+++
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 191
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 192 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 109
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 170 GLCRIWDTASGQCLKTL 186
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 252
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 198
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 199 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 116
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 177 GLCRIWDTASGQCLKTL 193
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 259
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 114 bits (284), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 198
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 199 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 116
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 177 GLCRIWDTASGQCLKTL 193
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 259
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 114 bits (284), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 197
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 198 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 115
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 176 GLCRIWDTASGQCLKTL 192
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 258
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 192
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 193 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 110
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 171 GLCRIWDTASGQCLKTL 187
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 253
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 209
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 210 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 127
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 188 GLCRIWDTASGQCLKTL 204
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 270
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 193
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 194 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 111
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 172 GLCRIWDTASGQCLKTL 188
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 254
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 188
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 189 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 106
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 167 GLCRIWDTASGQCLKTL 183
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 249
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 192
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 193 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 110
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 171 GLCRIWDTASGQCLKTL 187
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 253
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 216
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERF-- 248
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 217 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 249 -------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 34/248 (13%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109
H V + F S D IK+W K T+ GH I + + ++
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
SASDD+T++IW+ S C+ L GH++YV C F+P +++VS S D+++R+WD+ +
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 170 KNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229
P H + VS V F+ +IVS++ D R+
Sbjct: 166 LKTLP--------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 230 WDMTKRTCLNTFRREQERFWSEV--------IVSNAEDKSIRLWDMTKRTCLNTFRREQE 281
WD CL T + S V I++ D +++LWD +K CL T+ +
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 282 RFWVLVAH 289
+ + A+
Sbjct: 260 EKYCIFAN 267
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 134
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 260 KSIRLWDMTKRTCLNTFRREQER--FWVLVAHPTLNLFAAGHDAGMVVFKFERER--PAY 315
R+WD CL T + +V + + AA D + ++ + + + Y
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 316 TVHNNVMYYVKERF 329
T H N Y + F
Sbjct: 255 TGHKNEKYCIFANF 268
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 277
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 113 bits (282), Expect = 5e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 195
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 196 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 86 IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP 145
+FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 146 TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNN 205
+++VSAS D+T+++WD+S + + +GH N
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNY 112
Query: 206 VSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAE 258
V C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 259 DKSIRLWDMTKRTCLNTF 276
D R+WD CL T
Sbjct: 173 DGLCRIWDTASGQCLKTL 190
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 214
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERF-- 248
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 215 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 249 -------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 34/248 (13%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109
H V + F S D IK+W K T+ GH I + + ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
SASDD+T++IW+ S C+ L GH++YV C F+P +++VS S D+++R+WD+ +
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 170 KNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229
P H + VS V F+ +IVS++ D R+
Sbjct: 164 LKTLP--------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 230 WDMTKRTCLNTFRREQERFWSEV--------IVSNAEDKSIRLWDMTKRTCLNTFRREQE 281
WD CL T + S V I++ D +++LWD +K CL T+ +
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 282 RFWVLVAH 289
+ + A+
Sbjct: 258 EKYCIFAN 265
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 132
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 260 KSIRLWDMTKRTCLNTFRREQER--FWVLVAHPTLNLFAAGHDAGMVVFKFERER--PAY 315
R+WD CL T + +V + + AA D + ++ + + + Y
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 316 TVHNNVMYYVKERF 329
T H N Y + F
Sbjct: 253 TGHKNEKYCIFANF 266
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 275
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 112 bits (281), Expect = 9e-25, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ SS + +I++W + H+ + + + + + VS D
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 195
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D ++LWD +K CL T+ + E++
Sbjct: 196 PP------------VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 86 IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP 145
+FTL GH + + F W+ S+S D+ I+IW ++GH + +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 146 TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNN 205
+++VSAS D+T+++WD+S + + +GH N
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNY 112
Query: 206 VSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAE 258
V C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 259 DKSIRLWDMTKRTCLNTF 276
D R+WD CL T
Sbjct: 173 DGLCRIWDTASGQCLKTL 190
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + S++ DK I++W T + + WS ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 112 bits (280), Expect = 9e-25, Method: Composition-based stats.
Identities = 70/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V + F P W+ +S + +I++W + H+ + + + + + VS D
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D +K+W+ KC+ TL GH +Y+ F+ + I+S S D+++RIW+ ++ C+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
H+ V F+ ++VS+S D R+WD A + +K +D+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------------ASGQCLKTLIDDDN 195
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR-REQERFW- 249
VS V F P + I++ D +++LWD +K CL T+ + E++
Sbjct: 196 PP------------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 250 --------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
+ IVS +ED + +W++ + + + + HPT N+ A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146
FTL GH + + F W+ ++S D+ I+IW ++GH + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV 206
+++VSAS D+T+++WD+S + + +GH N V
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKC--------------------------LKTLKGHSNYV 113
Query: 207 SCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAED 259
C F+P+S +IVS + D+S+R+WD+ CL T + + +IVS++ D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 260 KSIRLWDMTKRTCLNTF 276
R+WD CL T
Sbjct: 174 GLCRIWDTASGQCLKTL 190
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI----FV 67
V + F P +IL++ + ++LWDY L+ + H+ I F N V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIW 120
SG +D + +WN + ++ + L GH D + +T H I SA+ +D+TI++W
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ----ERFWSE---VI 253
GH VS V F P E + +++ DK I++W T + + WS ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
VS ++DK++++WD++ CL T + + +P NL +G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR 125
VSG DD +KVW+ KC+ TL+GH + ++ I+S S D+T+++WN ++
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETG 189
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPG---------- 175
CI L GH V C H + VVS S D T+RVWDI + +V G
Sbjct: 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 176 ------MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229
GA D +K+W + +GH N V + F +VS + D SIR+
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETC--LHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRV 303
Query: 230 WDMTKRTCLNTFRREQE-----RFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR 277
WD+ C++T Q ++VS D ++++WD+ CL T +
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 34/268 (12%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I+S + +++W L H G V + I +SG D +KVWN +
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETG 189
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF 143
+CI TL GH +R H + ++S S D T+R+W+ ++ C+ VL GH V C Q+
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 144 HPTDDIVVSASLDQTIRVWD----------------ISGLRKKNVAPGMGADDRQIKLWR 187
VVS + D ++VWD + L+ + G+ D I++W
Sbjct: 248 DGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD 305
Query: 188 MNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE- 246
+ + GH + S + K ++VS D ++++WD+ CL T + +
Sbjct: 306 VETGNC--IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 247 -------RFWSEVIVSNAEDKSIRLWDM 267
+F ++++++D +++LWD+
Sbjct: 362 QSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 37/245 (15%)
Query: 78 WNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHY 137
W + K L GH D++ T I+S SDD T+++W+ + C+ L GH
Sbjct: 103 WRRGELKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 138 VMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197
V +Q D+I++S S D+T++VW N +
Sbjct: 162 VWSSQMR--DNIIISGSTDRTLKVW--------------------------NAETGECIH 193
Query: 198 IFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE-----RFWSEV 252
GH + V C+ H K +VS + D ++R+WD+ CL+ ++
Sbjct: 194 TLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 251
Query: 253 IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERER 312
+VS A D +++WD TCL+T + R + L +++ + D + V+ E
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIRVWDVETGN 310
Query: 313 PAYTV 317
+T+
Sbjct: 311 CIHTL 315
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 177
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 60/91 (65%)
Query: 458 ALHFVKDDRTRLTLALECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRT 517
AL FV+D R LALE GN+D AL+ A+ L D WERL AL QGN + EM YQ
Sbjct: 1 ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQ 60
Query: 518 KNFDKLAFLYLITGNLEKLKKMMKIAEIRRD 548
+FDKL+FLYL+TG++ KL KM IA+ R D
Sbjct: 61 HSFDKLSFLYLVTGDVNKLSKMQNIAQTRED 91
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 588 ITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGXX 647
+TG++ KL KM IA+ R D ER I G LAY A +G
Sbjct: 72 VTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE 131
Query: 648 XXXXXXXXNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPL 691
+ + TLP + ++ P +++ WPL
Sbjct: 132 AAASAFLEQAEVDEQDVTLPDQMDASNFVQRPV-ISKPLEKWPL 174
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 128/302 (42%), Gaps = 52/302 (17%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I+S L + I++WD H G V +C + + ++G D ++VW+
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCIC---VLTGHNHYVMC 140
+ + TL+ H + + F++ +++ S D++I +W+ S I VL GH V
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 141 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR 200
F D +VSAS D+TI+VW N S V
Sbjct: 262 VDFD--DKYIVSASGDRTIKVW--------------------------NTSTCEFVRTLN 293
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE-----RFWSEVIVS 255
GH ++C+ + + ++VS + D +IRLWD+ CL +E RF ++ IVS
Sbjct: 294 GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 351
Query: 256 NAEDKSIRLWDMTK---------RTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVF 306
A D I++WD+ CL T R + L + ++ HD ++++
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL-QFDEFQIVSSSHDDTILIW 410
Query: 307 KF 308
F
Sbjct: 411 DF 412
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 49/200 (24%)
Query: 99 TFFHHEYPWILSASDDQTIRIWNWQ----SRNCICVLTGHNHYVMCAQFHPTDDIVVSAS 154
+F+ YP I+ D +TI NW+ S I + + V C Q+ D +VS
Sbjct: 96 SFYRALYPKIIQ--DIETIES-NWRCGRHSLQRIHCRSETSKGVYCLQYD--DQKIVSGL 150
Query: 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK 214
D TI++WD + L K I GH +V C+ + +
Sbjct: 151 RDNTIKIWDKNTLECKR--------------------------ILTGHTGSVLCLQYDER 184
Query: 215 SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE-----RFWSEVIVSNAEDKSIRLWDMTK 269
VI++ + D ++R+WD+ LNT E RF + ++V+ ++D+SI +WDM
Sbjct: 185 --VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 242
Query: 270 RTCLNTFRREQERFWVLVAH 289
T + T RR VLV H
Sbjct: 243 PTDI-TLRR------VLVGH 255
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 15/219 (6%)
Query: 58 CFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTI 117
C + ++G DD I+V++ +K + L GH + + H ++S S D+T+
Sbjct: 127 CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV 185
Query: 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDI--VVSASLDQTIRVWDISGLRKKNVAPG 175
R+W+ + C V GHN V C +I +V+ S D T+ VW L K++ P
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK---LPKESSVPD 242
Query: 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235
G + ++ + + V + RGH +V V H ++VS + D ++ +WD+ +
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQX 300
Query: 236 TCLNTFRREQERFWSEVI-------VSNAEDKSIRLWDM 267
CL +R +S + +S + D +IR+WD+
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109
H VR + H I VSG D + VW+ Q KC++ L GH D I +T + HE +
Sbjct: 269 HXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
SAS D TIRIW+ ++ L GH + +D +VSA+ D +IR WD + +
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHT--ALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 384
Query: 170 K 170
K
Sbjct: 385 K 385
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG 69
A V+ +S H ++S ++ + +WD L H + + +++ +S
Sbjct: 271 ASVRTVSGHGNI--VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 70 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW--NWQSRNC 127
D I++W+ + + +TL GH + ++ ++SA+ D +IR W N SR
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDANDYSRK- 385
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK-KNVAPGMGADDRQIKLW 186
H + F+ +D+I+VS S +Q ++I LR K V + D QI W
Sbjct: 386 --FSYHHTNLSAITTFYVSDNILVSGSENQ----FNIYNLRSGKLVHANILKDADQI--W 437
Query: 187 RMN 189
+N
Sbjct: 438 SVN 440
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 15/229 (6%)
Query: 58 CFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTI 117
C + ++G DD I+V++ +K + L GH + + H ++S S D+T+
Sbjct: 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV 185
Query: 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDI--VVSASLDQTIRVWDISGLRKKNVAPG 175
R+W+ + C V GHN V C +I +V+ S D T+ VW L K++ P
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK---LPKESSVPD 242
Query: 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235
G + ++ + + V + RGH +V V H ++VS + D ++ +WD+ +
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQM 300
Query: 236 TCLNTFRREQERFWSEVI-------VSNAEDKSIRLWDMTKRTCLNTFR 277
CL +R +S + +S + D +IR+WD+ + T +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109
H VR + H I VSG D + VW+ Q KC++ L GH D I +T + HE +
Sbjct: 269 HMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
SAS D TIRIW+ ++ + L GH + +D +VSA+ D +IR WD + +
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 384
Query: 170 KNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCV-LFHPKSEVIVSNAEDK 225
K F H+ N+S + F+ ++VS +E++
Sbjct: 385 K----------------------------FSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG 69
A V+ +S H ++S ++ + +WD L H + + +++ +S
Sbjct: 271 ASVRTVSGHGNI--VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 70 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW--NWQSRNC 127
D I++W+ + + ++TL GH + ++ ++SA+ D +IR W N SR
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDANDYSRK- 385
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK-KNVAPGMGADDRQIKLW 186
H + F+ +D+I+VS S +Q ++I LR K V + D QI W
Sbjct: 386 --FSYHHTNLSAITTFYVSDNILVSGSENQ----FNIYNLRSGKLVHANILKDADQI--W 437
Query: 187 RMN 189
+N
Sbjct: 438 SVN 440
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 55/271 (20%)
Query: 95 YIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS 154
YIR+ F + ++ + ++D+ IRIW+ ++R + +L GH + + P+ D +VS S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 155 LDQTIRVWDI------------SGLRKKNVAPG------MGADDRQIKLWRMNDSKAW-- 194
D+T+R+WD+ G+ V+PG G+ DR +++W DS+
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW---DSETGFL 241
Query: 195 ------EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM------------TKRT 236
E + GH ++V V+F + +VS + D+S++LW++ T
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 237 CLNTFRREQERFWS-------EVIVSNAEDKSIRLWDMTKRTCLNTFRREQER-FWVLVA 288
C T+ ++ S E I+S ++D+ + WD L + + V VA
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
Query: 289 H-----PTLNLFAAGH-DAGMVVFKFERERP 313
+ P N+FA G D ++K+++ P
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 33 IQLWDYRMNTLLEKFDE-------HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK- 84
+++WD L+E+ D H+ V + F VSG D +K+WN +
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 85 -----------CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTG 133
C T +GH D++ + +ILS S D+ + W+ +S N + +L G
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 350
Query: 134 HNHYVMC------AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAP 174
H + V+ + P ++ + S D R+W + K +AP
Sbjct: 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW-----KYKKIAP 392
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 44/249 (17%)
Query: 46 KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEY 105
+ + H V + N VS D+ +++WN + +C + LGH + + F +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 106 PWILSASDDQTIRIWNWQSRNCICVLT--GHNHYVMCAQFHPTDD--IVVSASLDQTIRV 161
I+S D +R+WN + C+ L+ H +V C +F P+ D ++VS D ++V
Sbjct: 122 RQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN 221
WD++ R V +GH N V+ V P + S+
Sbjct: 181 WDLATGRL--------------------------VTDLKGHTNYVTSVTVSPDGSLCASS 214
Query: 222 AEDKSIRLWDMTKRTCL---------NTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTC 272
+D RLWD+TK L N R+W + A +K IR++D+ +
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYW----MCAATEKGIRIFDLENKDI 270
Query: 273 LNTFRREQE 281
+ E +
Sbjct: 271 IVELAPEHQ 279
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 84/218 (38%), Gaps = 43/218 (19%)
Query: 89 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDD 148
L GH ++ + + +SAS D ++R+WN Q+ C GH V+ F P +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 149 IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSC 208
+VS D +RVW++ G ++ G H + VSC
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRG-------------------------AHTDWVSC 157
Query: 209 VLFHPK--SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVI-------VSNAED 259
V F P + VIVS D +++WD+ + + S + S+ +D
Sbjct: 158 VRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKD 217
Query: 260 KSIRLWDMTKRTCL---------NTFRREQERFWVLVA 288
RLWD+TK L N R+W+ A
Sbjct: 218 GVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAA 255
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+ E SA V ++ + +S+ + ++LW+ + KF H V + F
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLL--GHLDYIRTTFFHH--EYPWILSASDDQTIRI 119
VSGG D ++VWN K +C+ TL H D++ F + P I+S D +++
Sbjct: 122 RQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 120 WNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
W+ + + L GH +YV P + S+ D R+WD++
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 97/278 (34%), Gaps = 79/278 (28%)
Query: 131 LTGHNHYVM---CAQFHPTDDIVVSASLDQTIRVW------------------------- 162
LTGH +V C Q T VVS S D+T+ W
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 163 ---DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV 219
D++ N A + D ++LW + + + F GH +V V F P + IV
Sbjct: 69 FVSDVALSNNGNFAVS-ASWDHSLRLWNLQNGQC--QYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 220 SNAEDKSIRLWDMTKRTCLNTFRREQERFW-----------SEVIVSNAEDKSIRLWDMT 268
S D ++R+W++ K C++T R W + VIVS D +++WD+
Sbjct: 126 SGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 269 K-----------------------RTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVV 305
C ++ + R W L L+ AAG +
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 306 FKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVV 343
F R M E+ + DL N KD +V
Sbjct: 245 FSPNRYW---------MCAATEKGIRIFDLEN-KDIIV 272
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 47 FDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTF 100
+ H G V + QP + +S D + W F + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160
+ + LSAS D+T+R+W+ + GH VM +++S S D+TI+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDISG------------LRKKNVAPGMGADDRQIKLWRMNDS---KAWEVDIFR----- 200
VW I G + + V P ADD + + + KAW ++ F+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 201 -GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
GH +N++ + P +I S +D I LW++ + + T + E F
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTI 117
+ +SG D IKVW K + C+ TLLGH D++ + I+SA +D+ +
Sbjct: 120 SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
+ WN GHN + P ++ SA D I +W+++
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 47/250 (18%)
Query: 88 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRN-----CICVLTGHNHYVMCA 141
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201
+SAS D+T+R+WD VA G F G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGE------------------TYQRFVG 105
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-------------RREQERF 248
H ++V V K+ +I+S + DK+I++W + K CL T E+
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 249 WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGMVVFK 307
S I+S DK ++ W++ + F L A P L A AG D ++++
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 308 FERERPAYTV 317
++ YT+
Sbjct: 225 LAAKKAMYTL 234
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+F + V + K I+S + I++W + L ++ + N++
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 64 P-----IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIR 118
+S G+D +K WN Q + +GH I T + I SA D I
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD------ISGLRKKNV 172
+WN ++ + L+ + V F P + ++A+ I+V+ + LR +
Sbjct: 222 LWNLAAKKAMYTLSAQDE-VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 173 APGMGADDRQIKLWRMNDSKAWEVD---IFRGHYNNV 206
A+ + L AW D +F G+ +NV
Sbjct: 280 GYSAAAEPHAVSL-------AWSADGQTLFAGYTDNV 309
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 47 FDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTF 100
+ H G V + QP + +S D + W F + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160
+ + LSAS D+T+R+W+ + GH VM +++S S D+TI+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDISG------------LRKKNVAPGMGADDRQIKLWRMNDS---KAWEVDIFR----- 200
VW I G + + V P ADD + + + KAW ++ F+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 201 -GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
GH +N++ + P +I S +D I LW++ + + T + E F
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTI 117
+ +SG D IKVW K + C+ TLLGH D++ + I+SA +D+ +
Sbjct: 120 SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
+ WN GHN + P ++ SA D I +W+++
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 47/250 (18%)
Query: 88 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRN-----CICVLTGHNHYVMCA 141
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201
+SAS D+T+R+WD VA G F G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGE------------------TYQRFVG 105
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-------------RREQERF 248
H ++V V K+ +I+S + DK+I++W + K CL T E+
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 249 WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGMVVFK 307
S I+S DK ++ W++ + F L A P L A AG D ++++
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 308 FERERPAYTV 317
++ YT+
Sbjct: 225 LAAKKAMYTL 234
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+F + V + K I+S + I++W + L ++ + N++
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 64 P-----IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIR 118
+S G+D +K WN Q + +GH I T + I SA D I
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD------ISGLRKKNV 172
+WN ++ + L+ + V F P + ++A+ I+V+ + LR +
Sbjct: 222 LWNLAAKKAMYTLSAQDE-VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 173 APGMGADDRQIKLWRMNDSKAWEVD---IFRGHYNNV 206
A+ + L AW D +F G+ +NV
Sbjct: 280 GYSKAAEPHAVSL-------AWSADGQTLFAGYTDNV 309
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 47 FDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTF 100
+ H G V + QP + +S D + W F + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160
+ + LSAS D+T+R+W+ + GH VM +++S S D+TI+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDISG------------LRKKNVAPGMGADDRQIKLWRMNDS---KAWEVDIFR----- 200
VW I G + + V P ADD + + + KAW ++ F+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 201 -GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
GH +N++ + P +I S +D I LW++ + + T + E F
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTI 117
+ +SG D IKVW K + C+ TLLGH D++ + I+SA +D+ +
Sbjct: 120 SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
+ WN GHN + P ++ SA D I +W+++
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 47/250 (18%)
Query: 88 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRN-----CICVLTGHNHYVMCA 141
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201
+SAS D+T+R+WD VA G F G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGE------------------TYQRFVG 105
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-------------RREQERF 248
H ++V V K+ +I+S + DK+I++W + K CL T E+
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 249 WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGMVVFK 307
S I+S DK ++ W++ + F L A P L A AG D ++++
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 308 FERERPAYTV 317
++ YT+
Sbjct: 225 LAAKKAMYTL 234
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+F + V + K I+S + I++W + L ++ + N++
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 64 P-----IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIR 118
+S G+D +K WN Q + +GH I T + I SA D I
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD------ISGLRKKNV 172
+WN ++ + L+ + V F P + ++A+ I+V+ + LR +
Sbjct: 222 LWNLAAKKAMYTLSAQDE-VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 173 APGMGADDRQIKLWRMNDSKAWEVD---IFRGHYNNV 206
A+ + L AW D +F G+ +NV
Sbjct: 280 GYSKAAEPHAVSL-------AWSADGQTLFAGYTDNV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 47 FDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTF 100
+ H G V + QP + +S D + W F + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160
+ + LSAS D+T+R+W+ + GH VM +++S S D+TI+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDISG------------LRKKNVAPGMGADDRQIKLWRMNDS---KAWEVDIFR----- 200
VW I G + + V P ADD + + + KAW ++ F+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 201 -GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
GH +N++ + P +I S +D I LW++ + + T + E F
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTIR 118
+ +SG D IKVW K + C+ TLLGH D++ + I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
WN GHN + P ++ SA D I +W+++
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 47/250 (18%)
Query: 88 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRN-----CICVLTGHNHYVMCA 141
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201
+SAS D+T+R+WD VA G F G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGE------------------TYQRFVG 105
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-------------RREQERF 248
H ++V V K+ +I+S + DK+I++W + K CL T E+
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 249 WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGMVVFK 307
S I+S DK ++ W++ + F L A P L A AG D ++++
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 308 FERERPAYTV 317
++ YT+
Sbjct: 225 LAAKKAMYTL 234
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+F + V + K I+S + I++W + L ++ + N++
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 64 P-----IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIR 118
+S G+D +K WN Q + +GH I T + I SA D I
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD------ISGLRKKNV 172
+WN ++ + L+ + V F P + ++A+ I+V+ + LR +
Sbjct: 222 LWNLAAKKAMYTLSAQDE-VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 173 APGMGADDRQIKLWRMNDSKAWEVD---IFRGHYNNV 206
A+ + L AW D +F G+ +NV
Sbjct: 280 GYSKAAEPHAVSL-------AWSADGQTLFAGYTDNV 309
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 47 FDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTF 100
+ H G V + QP + +S D + W F + GH ++
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 101 FHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160
+ + LSAS D+T+R+W+ + GH VM +++S S D+TI+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 161 VWDISG------------LRKKNVAPGMGADDRQIKLWRMNDS---KAWEVDIFR----- 200
VW I G + + V P ADD + + + KAW ++ F+
Sbjct: 127 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 201 -GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
GH +N++ + P +I S +D I LW++ + + T + E F
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 235
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTIR 118
+ +SG D IKVW K + C+ TLLGH D++ + I+SA +D+ ++
Sbjct: 115 MIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
WN GHN + P ++ SA D I +W+++
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 47/250 (18%)
Query: 88 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRN-----CICVLTGHNHYVMCA 141
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201
+SAS D+T+R+WD VA G F G
Sbjct: 66 TLTADGAYALSASWDKTLRLWD--------VATGE------------------TYQRFVG 99
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-------------RREQERF 248
H ++V V K+ +I+S + DK+I++W + K CL T E+
Sbjct: 100 HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADD 158
Query: 249 WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGMVVFK 307
S I+S DK ++ W++ + F L A P L A AG D ++++
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 308 FERERPAYTV 317
++ YT+
Sbjct: 219 LAAKKAMYTL 228
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+F + V + K I+S + I++W + L ++ + N++
Sbjct: 96 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 155
Query: 64 P-----IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIR 118
+S G+D +K WN Q + +GH I T + I SA D I
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD------ISGLRKKNV 172
+WN ++ + L+ + V F P + ++A+ I+V+ + LR +
Sbjct: 216 LWNLAAKKAMYTLSAQDE-VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 273
Query: 173 APGMGADDRQIKLWRMNDSKAWEVD---IFRGHYNNV 206
A+ + L AW D +F G+ +NV
Sbjct: 274 GYSKAAEPHAVSL-------AWSADGQTLFAGYTDNV 303
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 107/274 (39%), Gaps = 51/274 (18%)
Query: 24 ILSSLHNGVIQLW-----DYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVW 78
I+S+ + I LW D + H V + + +SG D ++++W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 79 NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT----GH 134
+ +GH + + F + I+SAS D+TI++WN C ++ GH
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGH 516
Query: 135 NHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSK 192
+V C +F P +VSAS D+T++VW++S + ++
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------------------- 556
Query: 193 AWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ------- 245
GH VS V P + S +D + LWD+ + L +
Sbjct: 557 ------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610
Query: 246 --ERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR 277
R+W + A + I++WD+ ++ + +
Sbjct: 611 SPNRYW----LCAATEHGIKIWDLESKSIVEDLK 640
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 45/217 (20%)
Query: 108 ILSASDDQTIRIWNWQSRNCICV-----LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
I+SAS D++I +W + LTGH+H+V +S S D +R+W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA 222
D++ G R+ F GH +V V F + IVS +
Sbjct: 458 DLAA----------GVSTRR----------------FVGHTKDVLSVAFSLDNRQIVSAS 491
Query: 223 EDKSIRLWDMTKRTCLNTFRR--EQERFW-----------SEVIVSNAEDKSIRLWDMTK 269
D++I+LW+ T C T E R W IVS + DK++++W+++
Sbjct: 492 RDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 270 RTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVF 306
+T + P +L A+G G+V+
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 23/170 (13%)
Query: 17 FHPK--RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK 74
F P +P I+S+ + +++W+ L H G V + + SGG D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 75 IKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL--- 131
+ +W+ + K +++L + I F W+ +A+ + I+IW+ +S++ + L
Sbjct: 585 VLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVD 642
Query: 132 --------------TGHNHYVMCAQFHPTDD--IVVSASLDQTIRVWDIS 165
+ C + + D + S D IRVW I
Sbjct: 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 27/226 (11%)
Query: 50 HEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTFFHH 103
H G V + QP + +S D + W F + GH ++
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 104 EYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ + LSAS D+T+R+W+ + GH V ++S S D+TI+VW
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWT 135
Query: 164 ISG------------LRKKNVAPGMGADDRQIKLWRM-NDS--KAWEVDIFR------GH 202
I G + + V P ADD + + ND KAW ++ F+ GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGH 195
Query: 203 YNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
+N++ + P +I S +D I LW++ + T + E F
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 65 IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTIR 118
+SG D IKVW K +C+ TLLGH D++ + I+SA +D+ ++
Sbjct: 121 XIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 166
WN GHN + P ++ SA D I +W+++
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 51/252 (20%)
Query: 88 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRN-----CICVLTGHNHYVMCA 141
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201
+SAS D+T+R+WD++ G ++ F G
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVA----------TGETYQR----------------FVG 105
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW------------ 249
H ++V V K+ I+S + DK+I++W + K CL T + W
Sbjct: 106 HKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEKA 162
Query: 250 ---SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGMVV 305
S I+S DK ++ W++ + F L A P L A AG D + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 306 FKFERERPAYTV 317
+ ++ YT+
Sbjct: 223 WNLAAKKAXYTL 234
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 67 VSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN 126
+S G+D +K WN Q + +GH I T + I SA D I +WN ++
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Query: 127 CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD------ISGLRKKNVAPGMGADD 180
L+ + V F P + ++A+ I+V+ + LR + A+
Sbjct: 230 AXYTLSAQDE-VFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 181 RQIKLWRMNDSKAWEVD---IFRGHYNNV 206
+ L AW D +F G+ +NV
Sbjct: 288 HAVSL-------AWSADGQTLFAGYTDNV 309
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 123/314 (39%), Gaps = 39/314 (12%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I S + +Q++ L + HE V F + D K+K+WN
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWIL--SASDDQTIRIWNWQSRNCICVLTGHNHYVMCA 141
+ + T H + + F + +L + S D +++W+ + C + GH + V
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 142 QFHPTDDIVVSASLDQTIRVWDISGLRKK---NVAPG-MGADDRQIKLWRMNDSKAWEVD 197
+F P D ++ S S D T+++WD + ++ NV + +D Q + + +W D
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSAD 815
Query: 198 -------------------------IFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232
I GH++ + F P++ + V + LW+
Sbjct: 816 GARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT 875
Query: 233 TKRT----CLNTFRREQERFWS---EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285
R+ C +S +++++D++IRLW+ TK+ C N+ ++ V
Sbjct: 876 DSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE-TKKVCKNSAVMLKQEVDV 934
Query: 286 LVAHPTLNLFAAGH 299
+ + + A H
Sbjct: 935 VFQENEVMVLAVDH 948
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 28/224 (12%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG 69
A+V P +I NG I++ + N + + +H+ V I F + +S
Sbjct: 968 AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS 1027
Query: 70 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCIC 129
DD +I+VWN++ KCIF L GH + ++ F + +LS S D T+++WN + N
Sbjct: 1028 SDDAEIQVWNWQLDKCIF-LRGHQETVK-DFRLLKNSRLLSWSFDGTVKVWNIITGNKEK 1085
Query: 130 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN 189
H V+ S S D+T ++W D + L +
Sbjct: 1086 DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF---------------DLLLPLHEL- 1129
Query: 190 DSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT 233
RGH V C F S ++ + ++ IR+W+++
Sbjct: 1130 ----------RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 24/184 (13%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109
H V CF S G D ++V+ + + + + H D + F + +I
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
+ S D+ ++IWN + + H+ V C F + ++ A+
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT--------------- 724
Query: 170 KNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229
G+ D +KLW +N + + GH N+V+ F P +++ S + D +++L
Sbjct: 725 -------GSSDCFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 230 WDMT 233
WD T
Sbjct: 776 WDAT 779
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 82/205 (40%), Gaps = 26/205 (12%)
Query: 91 GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIV 150
GH I+ F + + A + +WN SR+ + GH +V F P
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 151 VSASLDQTIRVWDISGLRK---------------KNVAPGMGADDRQIKLWRMNDSKAWE 195
+++S DQTIR+W+ + K +N + D I+ ++ + + +
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVD--HIRRLQLINGRTGQ 961
Query: 196 VDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW------ 249
+D VSC P + I E+ +I + ++ + + ++ W
Sbjct: 962 IDYLTE--AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTA 1019
Query: 250 -SEVIVSNAEDKSIRLWDMTKRTCL 273
+ ++S+++D I++W+ C+
Sbjct: 1020 DEKTLISSSDDAEIQVWNWQLDKCI 1044
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 57/323 (17%), Positives = 115/323 (35%), Gaps = 40/323 (12%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG 69
+ ++ F P+ + +L ++LW+ + + H V G+ F F++
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 70 GDDYKIKVWNYKQ--RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW----- 122
DD I++W K+ + L +D + F +L+ + +++ N
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVV----FQENEVMVLAVDHIRRLQLINGRTGQI 962
Query: 123 ----QSRNCICVLTGHNHYVMCAQFHPTDDI-------VVSASLDQTIRVWDISGLRKKN 171
+++ C L+ H Y+ + +I + + VW I +
Sbjct: 963 DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEK 1022
Query: 172 VAPGMGADDRQIKLWRMNDSKAWEVD---IFRGHYNNVSCVLFHPKSEVIVSNAEDKSIR 228
+DD +I++W W++D RGH V K+ ++S + D +++
Sbjct: 1023 TLIS-SSDDAEIQVWN------WQLDKCIFLRGHQETVKDFRL-LKNSRLLSWSFDGTVK 1074
Query: 229 LWDMTKRTCLNTFRREQERFWSEVI-------VSNAEDKSIRLWDMTKRTCLNTFRREQE 281
+W++ F Q S I S + DK+ ++W L+ R
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNG 1134
Query: 282 RFWVLVAHPTLNLFAAGHDAGMV 304
L A G D G +
Sbjct: 1135 CVRCSAFSVDSTLLATGDDNGEI 1157
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I S + +Q++ L HE V F + + D K+K+W+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWIL--SASDDQTIRIWNWQSRNCICVLTGHNHYVMCA 141
K + T H + + F ++ +L + S+D +++W+ + C + GH + V
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 142 QFHPTDDIVVSASLDQTIRVWDI-SGLRKKNV---------------------APGMGAD 179
+F P D+++ S S D T+R+WD+ S +K++ AD
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 816
Query: 180 DRQIKLWRMNDSKAWEV-------DIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232
+I + N +++ +I GH++ + F P + V + LW++
Sbjct: 817 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
Query: 233 TKR----TCLNTFRREQERFWS---EVIVSNAEDKSIRLWDMTKRTCLNT 275
R C +S ++ ++D++IR+W+ TK+ C N+
Sbjct: 877 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVCKNS 925
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 92 HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 151
H D + F + I S D+T++++ ++ + + H V+C F D +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 152 SASLDQTIRVWDISGL--------------------RKKNVAPGMGADDRQIKLWRMNDS 191
+ S D+ +++WD + + ++ G++D +KLW +N
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232
+ + GH N+V+ F P E++ S + D ++RLWD+
Sbjct: 741 EC--RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 18/206 (8%)
Query: 51 EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS 110
E V C G +D IK+ + + +GH +R F + ++S
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 111 ASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD-ISGLRK 169
+S+D I++WNWQ+ + + L H V + D ++S S D T++VW+ I+G +
Sbjct: 1028 SSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIE 1085
Query: 170 KN--------VAPGMGADDRQIKLWRMNDS-KAWEVDI------FRGHYNNVSCVLFHPK 214
++ ++ + +D + + + K W D+ +GH V C F
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 215 SEVIVSNAEDKSIRLWDMTKRTCLNT 240
++ + ++ IR+W+++ L++
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 37/244 (15%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLL-EKFDEHEGPVRGICFHNQQPIFVSGG 70
VK S+ I+ + N V+ L+D + LL E H ++ F + V
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 71 DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV 130
Y +++WN R + GHL ++ F + L+ASDDQTIR+W + +C
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK---VC- 922
Query: 131 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR-------KKNVAP--------- 174
N ++ Q D+V + + V +I GL+ + + P
Sbjct: 923 ---KNSAIVLKQ---EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 976
Query: 175 -------GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSI 227
G +D IK+ + +++ + + GH V + F + ++S++ED I
Sbjct: 977 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 228 RLWD 231
++W+
Sbjct: 1035 QVWN 1038
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMN--TLLEKFDEHEGPVRGICFHNQQPIFVSG 69
V+ + F ++SS + VIQ+W+++ L+ E R + Q +S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL----QDSRLLSW 1068
Query: 70 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCIC 129
D +KVWN + H + + + S S D+T +IW++ + +
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Query: 130 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
L GHN V C+ F ++ + + IR+W++S
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
+LS +G +++W+ + F H+G V + F S D K+W++
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS----RNC--ICVLTG---H 134
+ L GH +R + F + + + D+ IRIWN +C I V G H
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1184
Query: 135 NHYVMCAQFHPTDDIVVSA 153
+V F P +VSA
Sbjct: 1185 GGWVTDVCFSPDSKTLVSA 1203
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I S + +Q++ L HE V F + + D K+K+W+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWIL--SASDDQTIRIWNWQSRNCICVLTGHNHYVMCA 141
K + T H + + F ++ +L + S+D +++W+ + C + GH + V
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 142 QFHPTDDIVVSASLDQTIRVWDI-SGLRKKNV---------------------APGMGAD 179
+F P D+++ S S D T+R+WD+ S +K++ AD
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 180 DRQIKLWRMNDSKAWEV-------DIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232
+I + N +++ +I GH++ + F P + V + LW++
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 233 TKR----TCLNTFRREQERFWS---EVIVSNAEDKSIRLWDMTKRTCLNT 275
R C +S ++ ++D++IR+W+ TK+ C N+
Sbjct: 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVCKNS 918
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 92 HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 151
H D + F + I S D+T++++ ++ + + H V+C F D +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 152 SASLDQTIRVWDISGL--------------------RKKNVAPGMGADDRQIKLWRMNDS 191
+ S D+ +++WD + + ++ G++D +KLW +N
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232
+ + GH N+V+ F P E++ S + D ++RLWD+
Sbjct: 734 EC--RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 18/206 (8%)
Query: 51 EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS 110
E V C G +D IK+ + + +GH +R F + ++S
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 111 ASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD-ISGLRK 169
+S+D I++WNWQ+ + + L H V + D ++S S D T++VW+ I+G +
Sbjct: 1021 SSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 170 KN--------VAPGMGADDRQIKLWRMNDS-KAWEVDI------FRGHYNNVSCVLFHPK 214
++ ++ + +D + + + K W D+ +GH V C F
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 215 SEVIVSNAEDKSIRLWDMTKRTCLNT 240
++ + ++ IR+W+++ L++
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 37/244 (15%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLL-EKFDEHEGPVRGICFHNQQPIFVSGG 70
VK S+ I+ + N V+ L+D + LL E H ++ F + V
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 71 DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV 130
Y +++WN R + GHL ++ F + L+ASDDQTIR+W + +C
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK---VC- 915
Query: 131 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR-------KKNVAP--------- 174
N ++ Q D+V + + V +I GL+ + + P
Sbjct: 916 ---KNSAIVLKQ---EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969
Query: 175 -------GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSI 227
G +D IK+ + +++ + + GH V + F + ++S++ED I
Sbjct: 970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 228 RLWD 231
++W+
Sbjct: 1028 QVWN 1031
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMN--TLLEKFDEHEGPVRGICFHNQQPIFVSG 69
V+ + F ++SS + VIQ+W+++ L+ E R + Q +S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL----QDSRLLSW 1061
Query: 70 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCIC 129
D +KVWN + H + + + S S D+T +IW++ + +
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 130 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165
L GHN V C+ F ++ + + IR+W++S
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
+LS +G +++W+ + F H+G V + F S D K+W++
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS----RNC--ICVLTG---H 134
+ L GH +R + F + + + D+ IRIWN +C I V G H
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 135 NHYVMCAQFHPTDDIVVSA 153
+V F P +VSA
Sbjct: 1178 GGWVTDVCFSPDSKTLVSA 1196
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 34/225 (15%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICF----HNQQPIFV 67
+ SF IL++ +G LWD LL+ F H V +C FV
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFV 214
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127
SGG D K VW+ + +C+ H + + ++ S SDD T R+++ ++
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 128 ICVLTGHN--HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKL 185
+ + + + F + ++ + D TI VWD+
Sbjct: 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV--------------------- 313
Query: 186 WRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLW 230
K V I GH N VS + P S + D ++R+W
Sbjct: 314 -----LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 107/294 (36%), Gaps = 47/294 (15%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVW----- 78
I+SS +G + +WD V + GG D K V+
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138
Query: 79 ---NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHN 135
N +K + H +Y+ F + IL+AS D T +W+ +S + GH
Sbjct: 139 KNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG 196
Query: 136 HYVMCAQFHP--TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKA 193
V+C P T + VS D+ VWD +R
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWD---MRSGQC--------------------- 232
Query: 194 WEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSE-- 251
V F H ++V+ V ++P + S ++D + RL+D+ + + +E F +
Sbjct: 233 --VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290
Query: 252 -------VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298
++ + D +I +WD+ K + ++ + R L P F +G
Sbjct: 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%)
Query: 1 MLTKFETKSARVKGLSFHPKRPW--ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGIC 58
+L F A V L P +S + +WD R ++ F+ HE V +
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 59 FHNQQPIFVSGGDDYKIKVWNYKQRK--CIFTLLGHLDYIRTTFFHHEYPWILSASDDQT 116
++ F SG DD ++++ + + I++ + + F + + +D T
Sbjct: 248 YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT 307
Query: 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
I +W+ + + +L GH + V + P S S D T+RVW
Sbjct: 308 INVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 29/222 (13%)
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
TL GH + + + + I+S+S D + +W+ + N +T +VM + P+
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207
+ LD V+ ++ + +N M A + + + H N +S
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNEN----MAAKKKSVAM----------------HTNYLS 158
Query: 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW---------SEVIVSNAE 258
F I++ + D + LWD+ L +F VS
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 259 DKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHD 300
DK +WDM C+ F + + +P+ + FA+G D
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 42/274 (15%)
Query: 42 TLLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDY 95
TL H G V I Q P + +S D I +W + + + L GH +
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 96 IRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL 155
+ + + LS S D T+R+W+ + GH V+ F + +VS S
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 156 DQTIRVWDISGLRKKNV--------------APGMGAD-------DRQIKLWRMNDSKAW 194
D+TI++W+ G+ K V +P D+ +K+W + + K
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT---------CLNTFRREQ 245
I GH ++ V P + S +D LWD+ + +N
Sbjct: 209 TNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266
Query: 246 ERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE 279
R+W + A SI++WD+ + ++ ++E
Sbjct: 267 NRYW----LCAATGPSIKIWDLEGKIIVDELKQE 296
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 35/225 (15%)
Query: 25 LSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK 84
LS +G ++LWD T +F H V + F + VSG D IK+WN
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGV 160
Query: 85 CIFTLL--GHLDYIRTTFF--HHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMC 140
C +T+ H +++ F + P I+S D+ +++WN + GH Y+
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220
Query: 141 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSK-AWEVDIF 199
P + S G D Q LW +N+ K + +D
Sbjct: 221 VTVSPDGSLCAS------------------------GGKDGQAMLWDLNEGKHLYTLD-- 254
Query: 200 RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE 244
G N C F P + + A SI++WD+ + ++ ++E
Sbjct: 255 GGDIINALC--FSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQE 296
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 6 ETKSARVKGLSFHP--KRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
E+ S V + F P P I+S + ++++W+ L H G + +
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ 123
+ SGG D + +W+ + K ++TL G D I F W+ +A+ +I+IW+ +
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAAT-GPSIKIWDLE 285
Query: 124 SR 125
+
Sbjct: 286 GK 287
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 42/274 (15%)
Query: 42 TLLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDY 95
TL H G V I Q P + +S D I +W + + + L GH +
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 96 IRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL 155
+ + + LS S D T+R+W+ + GH V+ F + +VS S
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 156 DQTIRVWDISGLRKKNV--------------APGMGAD-------DRQIKLWRMNDSKAW 194
D+TI++W+ G+ K V +P D+ +K+W + + K
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT---------CLNTFRREQ 245
I GH ++ V P + S +D LWD+ + +N
Sbjct: 186 TNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 243
Query: 246 ERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE 279
R+W + A SI++WD+ + ++ ++E
Sbjct: 244 NRYW----LCAATGPSIKIWDLEGKIIVDELKQE 273
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 35/225 (15%)
Query: 25 LSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK 84
LS +G ++LWD T +F H V + F + VSG D IK+WN
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGV 137
Query: 85 CIFTLL--GHLDYIRTTFF--HHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMC 140
C +T+ H +++ F + P I+S D+ +++WN + GH Y+
Sbjct: 138 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 197
Query: 141 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSK-AWEVDIF 199
P + S G D Q LW +N+ K + +D
Sbjct: 198 VTVSPDGSLCAS------------------------GGKDGQAMLWDLNEGKHLYTLD-- 231
Query: 200 RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE 244
G N C F P + + A SI++WD+ + ++ ++E
Sbjct: 232 GGDIINALC--FSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQE 273
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 6 ETKSARVKGLSFHP--KRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
E+ S V + F P P I+S + ++++W+ L H G + +
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ 123
+ SGG D + +W+ + K ++TL G D I F W+ +A+ +I+IW+ +
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAAT-GPSIKIWDLE 262
Query: 124 SR 125
+
Sbjct: 263 GK 264
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 76/160 (47%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+T+ + +++ P ++ S +G+I ++D LL + H P+R + F
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ 123
+ V+ DD IK+++ + TL GH ++ F + +S+S D+++++W+
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 124 SRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+R C+ H V +++ +VS DQ I ++D
Sbjct: 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRG--ICFHNQQPIFVSGGDDYKIKVWN 79
P SS + I+LWD ++ D GPV + F +G K+ ++
Sbjct: 93 PIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 80 YKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVM 139
+ K ++L +I + + + ++ S + D I I++ + + L GH +
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 140 CAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF 199
F P ++V+AS D I+++D+ + N+A +
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDV---QHANLAGTL----------------------- 244
Query: 200 RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEV 252
GH + V V F P VS++ DKS+++WD+ RTC++TF Q++ W
Sbjct: 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
Query: 253 IVSNAEDKSIRLWD 266
IVS +D+ I ++D
Sbjct: 305 IVSVGDDQEIHIYD 318
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 26/217 (11%)
Query: 15 LSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK 74
L+F P ++ + H G + ++ D + I + SG D
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 75 IKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGH 134
I +++ K + TL GH IR+ F + +++ASDD I+I++ Q N L+GH
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 135 NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194
+V+ F P D VS+S D++++VWD+ G R
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDV-GTRTC------------------------ 282
Query: 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
V F H + V V ++ IVS +D+ I ++D
Sbjct: 283 -VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 33/247 (13%)
Query: 67 VSGGDDYKIKVWNYKQRKCI--FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
V+G D +KVW ++ + ++L GH + + H P S+S D IR+W+ ++
Sbjct: 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111
Query: 125 RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK-------------N 171
I + F P + + + + ++ + +K+
Sbjct: 112 GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171
Query: 172 VAP-----GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKS 226
+P GA D I ++ + K + GH + + F P S+++V+ ++D
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 227 IRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRL---------WDMTKRTCLNTFR 277
I+++D+ T W + +D WD+ RTC++TF
Sbjct: 230 IKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 278 REQERFW 284
Q++ W
Sbjct: 288 DHQDQVW 294
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L E + ++ L+F P ++++ +G I+++D + L H V + F
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 61 NQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120
FVS D +KVW+ R C+ T H D + ++ I+S DDQ I I+
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 121 N 121
+
Sbjct: 318 D 318
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 43/212 (20%)
Query: 108 ILSASDDQTIRIWNWQSR--NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI- 164
+++ S D +++W W+ + L GH V+ T I S+SLD IR+WD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 165 SGLRKKNVAPGMGADDRQIKLWRM----------NDSKAWEVDIF-------------RG 201
+G + K++ G + W + + +V+IF RG
Sbjct: 111 NGKQIKSIDAG------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164
Query: 202 HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-------RREQERFWSEVIV 254
+ + + + P + + S A D I ++D+ L+T R S+++V
Sbjct: 165 KF--ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 255 SNAEDKSIRLWDMTKRTCLNTFRREQERFWVL 286
+ ++D I+++D+ T WVL
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLSGHAS--WVL 252
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 32/244 (13%)
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
TL GHL I + + +LSAS D + IW+ + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207
+ V LD ++++ R+ NV R++ A GH +S
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV--------------RVSRELA-------GHTGYLS 147
Query: 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDK 260
C F ++++ S+ D + LWD+ TF S + VS A D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 261 SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTV-H 318
S +LWD+ + C TF + + P N FA G DA +F ++ T H
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 319 NNVM 322
+N++
Sbjct: 267 DNII 270
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDY---IRTTFFHHEYPWILSASDDQTIRIWNWQSR 125
G DD ++++ + + + T H + I + F +L+ DD +W+
Sbjct: 244 GSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ VL GH++ V C V + S D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 24/208 (11%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I++S + LWD F H G V + +FVSG D K+W+ ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF 143
C T GH I F + SDD T R+++ ++ + +T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICG-- 272
Query: 144 HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203
+ S S ++ R+ G DD +W + KA + GH
Sbjct: 273 ------ITSVSFSKSGRL------------LLAGYDDFNCNVW--DALKADRAGVLAGHD 312
Query: 204 NNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
N VSC+ + + + D +++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 32/244 (13%)
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
TL GHL I + + +LSAS D + IW+ + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207
+ V LD ++++ R+ NV R++ A GH +S
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV--------------RVSRELA-------GHTGYLS 147
Query: 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDK 260
C F ++++ S+ D + LWD+ TF S + VS A D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 261 SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTV-H 318
S +LWD+ + C TF + + P N FA G DA +F ++ T H
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 319 NNVM 322
+N++
Sbjct: 267 DNII 270
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDY---IRTTFFHHEYPWILSASDDQTIRIWNWQSR 125
G DD ++++ + + + T H + I + F +L+ DD +W+
Sbjct: 244 GSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ VL GH++ V C V + S D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 24/208 (11%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I++S + LWD F H G V + +FVSG D K+W+ ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF 143
C T GH I F + SDD T R+++ ++ + +T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICG-- 272
Query: 144 HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203
+ S S ++ R+ G DD +W + KA + GH
Sbjct: 273 ------ITSVSFSKSGRL------------LLAGYDDFNCNVW--DALKADRAGVLAGHD 312
Query: 204 NNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
N VSC+ + + + D +++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 42/211 (19%)
Query: 64 PIFVSGGDDYKIKVWN-YKQRKCIF------TLLGHLDYIRTTFFHHEYPWILSASDDQT 116
P+ +SG D + +W Y++ + + L GH ++ E + +S+S D+T
Sbjct: 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99
Query: 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI------SGLRKK 170
+R+W+ ++ GH V F P + ++SA ++ I++W+I S K+
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Query: 171 N----------------------VAP---GMGADDRQIKLWRMNDSKAWEVDIFRGHYNN 205
N AP +G D R +K+W N + F+ H +N
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR-LKVWNTNFQIRY---TFKAHESN 215
Query: 206 VSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT 236
V+ + P + I + +DK + +WD+ T
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLT 246
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 18 HPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKV 77
P P+ S +G +++W+ + F HE V + +GG D K+ +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239
Query: 78 WN-----YKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW--QSRNCICV 130
W+ Y QR+ F ++ I F+ + W+ + DQ ++I+N QS+ +C
Sbjct: 240 WDILNLTYPQRE--FDAGSTINQIA---FNPKLQWV-AVGTDQGVKIFNLMTQSKAPVCT 293
Query: 131 L 131
+
Sbjct: 294 I 294
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLW--------DYRMNTLLEKFDEHEGPVRGICFHNQQ 63
++ +++ P + + + + +W + M+ LL + HE V+G+ + N
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD-LLAIIEGHENEVKGVAWSNDG 119
Query: 64 PIFVSGGDDYKIKVWNY----KQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRI 119
+ D + +W ++ +CI L H ++ +H + S+S D T+RI
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 120 W-----NWQSRNCICVLTGHNHYVMCAQFHPTDDI--VVSASLDQTIRVWDISG 166
W +W+ C+ VL GH V + F T+ + + S S D T+RVW G
Sbjct: 180 WKDYDDDWE---CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 41/209 (19%)
Query: 38 YRMNTLLEKFDE--HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ---RKCIFTLL-- 90
Y TL++ DE H+ +R + + + +G D + +W ++ R LL
Sbjct: 43 YDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI 102
Query: 91 --GHLDYIRTTFFHHEYPWILSASDDQTIRIW----NWQSRNCICVLTGHNHYVMCAQFH 144
GH + ++ + ++ ++ + S D+++ IW + + CI VL H+ V +H
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 145 PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE-VDIFRGHY 203
P++ ++ S+S D T+R+W DD WE V + GH
Sbjct: 163 PSEALLASSSYDDTVRIW-------------KDYDDD------------WECVAVLNGHE 197
Query: 204 NNVSCVLFHPKSEV--IVSNAEDKSIRLW 230
V F V + S ++D ++R+W
Sbjct: 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 52/233 (22%)
Query: 59 FHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD------YIRTTFFHHEYPWILSAS 112
F Q I +G D KIK+ + K FTL+ LD IR+ + + + S
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDD--FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77
Query: 113 DDQTIRIWNWQSR-------NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW--D 163
D T+ IW + + + ++ GH + V + + + S D+++ +W D
Sbjct: 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
SG + ++ + + H +V V++HP ++ S++
Sbjct: 138 ESGEEYECIS------------------------VLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 224 DKSIRLWD--MTKRTCLNTFRREQERFWSEV---------IVSNAEDKSIRLW 265
D ++R+W C+ + WS + S ++D ++R+W
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLW-DYRMN-TLLEKFDEHEGPVRGICF 59
++ + S VK + +HP + SS ++ +++W DY + + + HEG V F
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205
Query: 60 HNQQPIF--VSGGDDYKIKVWNY 80
+ +F SG DD ++VW Y
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 32/244 (13%)
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
TL GHL I + + ++SAS D + IW+ + N + + + +VM + P+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207
+ V LD ++++ R+ NV R++ A GH +S
Sbjct: 121 NYVACGGLDNICSIYNLK-TREGNV--------------RVSRELA-------GHTGYLS 158
Query: 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDK 260
C F ++++ S+ D + LWD+ TF S + VS A D
Sbjct: 159 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 217
Query: 261 SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTV-H 318
S +LWD+ + C TF + + P N FA G DA +F ++ T H
Sbjct: 218 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 277
Query: 319 NNVM 322
+N++
Sbjct: 278 DNII 281
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDY---IRTTFFHHEYPWILSASDDQTIRIWNWQSR 125
G DD ++++ + + + T H + I + F +L+ DD +W+
Sbjct: 255 GSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ VL GH++ V C V + S D +++W+
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 24/208 (11%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I++S + LWD F H G V + +FVSG D K+W+ ++
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF 143
C T GH I F + SDD T R+++ ++ + +T + ++C
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICG-- 283
Query: 144 HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203
+ S S ++ R+ G DD +W + KA + GH
Sbjct: 284 ------ITSVSFSKSGRL------------LLAGYDDFNCNVW--DALKADRAGVLAGHD 323
Query: 204 NNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
N VSC+ + + + D +++W+
Sbjct: 324 NRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 32/244 (13%)
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
TL GHL I + + ++SAS D + IW+ + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207
+ V LD ++++ R+ NV R++ A GH +S
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV--------------RVSRELA-------GHTGYLS 147
Query: 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDK 260
C F ++++ S+ D + LWD+ TF S + VS A D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 261 SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTV-H 318
S +LWD+ + C TF + + P N FA G DA +F ++ T H
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 319 NNVM 322
+N++
Sbjct: 267 DNII 270
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDY---IRTTFFHHEYPWILSASDDQTIRIWNWQSR 125
G DD ++++ + + + T H + I + F +L+ DD +W+
Sbjct: 244 GSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ VL GH++ V C V + S D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 24/208 (11%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I++S + LWD F H G V + +FVSG D K+W+ ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF 143
C T GH I F + SDD T R+++ ++ + +T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICG-- 272
Query: 144 HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203
+ S S ++ R+ G DD +W + KA + GH
Sbjct: 273 ------ITSVSFSKSGRL------------LLAGYDDFNCNVW--DALKADRAGVLAGHD 312
Query: 204 NNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
N VSC+ + + + D +++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 32/244 (13%)
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
TL GHL I + + ++SAS D + IW+ + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207
+ V LD ++++ R+ NV R++ A GH +S
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV--------------RVSRELA-------GHTGYLS 147
Query: 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDK 260
C F ++++ S+ D + LWD+ TF S + VS A D
Sbjct: 148 CCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206
Query: 261 SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTV-H 318
S +LWD+ + C TF + + P N FA G DA +F ++ T H
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 319 NNVM 322
+N++
Sbjct: 267 DNII 270
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDY---IRTTFFHHEYPWILSASDDQTIRIWNWQSR 125
G DD ++++ + + + T H + I + F +L+ DD +W+
Sbjct: 244 GSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ VL GH++ V C V + S D +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 24/208 (11%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83
I++S + LWD F H G V + +FVSG D K+W+ ++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF 143
C T GH I F + SDD T R+++ ++ + +T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICG-- 272
Query: 144 HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203
+ S S ++ R+ G DD +W + KA + GH
Sbjct: 273 ------ITSVSFSKSGRL------------LLAGYDDFNCNVW--DALKADRAGVLAGHD 312
Query: 204 NNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
N VSC+ + + + D +++W+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 110/276 (39%), Gaps = 41/276 (14%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
+ S +V L + P++ WI+S+ +G + +W+ + H V F
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 65 IFVSGGDDYKIKVWNYKQRK-------CIFTLLGHLDYIRTT-FFHHEYPWILSASDDQT 116
GG D ++N + L GH Y + + + +++ S DQT
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 117 IRIWNWQSRNCICVL-----TGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKK 170
+W+ + I + +GH V+ + + ++ +S S D T+R+WD LR
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD---LRIT 238
Query: 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLW 230
+ A V + GH +++ V F P + + ++D + RL+
Sbjct: 239 SRA----------------------VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 231 DMTKRTCLNTFRREQERFWSE--VIVSNAEDKSIRL 264
DM L + RE +R +E ++ S A S RL
Sbjct: 277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 36/234 (15%)
Query: 85 CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFH 144
C TL GH + + + E WI+SAS D + +WN + + H +VM F
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 145 PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYN 204
P V LD ++++S + D + + R + GH
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADR---------DGNMPVSR----------VLTGHKG 158
Query: 205 NVSCVLFHPKSEV-IVSNAEDKSIRLWDMTKRTCLNTFRRE-------------QERFWS 250
S + P E +++ + D++ LWD+T ++ F E +
Sbjct: 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218
Query: 251 EVIVSNAEDKSIRLWDM--TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAG 302
+ +S + D ++RLWD+ T R + T+ + + P F G D G
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRA-VRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 20/162 (12%)
Query: 24 ILSSLHNGVIQLWDYRMNT-LLEKFDEHEGPVRGICFHNQQPIFVSGGDD---------- 72
+S + ++LWD R+ + + + HEG + + F F +G DD
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 73 -YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW----QSRNC 127
++++V+N + + L + + F + + + +W+ N
Sbjct: 281 GHQLQVYNREPDRND----NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
+ H + C + + S D+ +++W SG RK
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 32/229 (13%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKF---DEHEGPVRGICFHNQQPIF 66
+R L+++P + S + I++W ++ + K + H+ VR + +
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 67 VSGGDDYKIKVWNYKQR--KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
S D +W Q +C+ TL GH + +++ + + + S D+++ +W
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 125 RN---CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDR 181
+ C+ VL H V +HP+ +++ SAS D T+
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV---------------------- 174
Query: 182 QIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLW 230
KL+R + GH + V + F P + + S ++D+++R+W
Sbjct: 175 --KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 21/242 (8%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEK---FDEHEGPVRGIC 58
+T E VK +++ P + + + + +W+ E + H V+ +
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157
Query: 59 FHNQQPIFVSGGDDYKIKVWNYKQRK--CIFTLLGHLDYIRTTFFHHEYPWILSASDDQT 116
+H Q + S D +K++ ++ C TL GH + + F + S SDD+T
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217
Query: 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGM 176
+RIW R L G+ V C+ P+ + + S + ++DI+ +
Sbjct: 218 VRIW----RQ---YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA 270
Query: 177 GADDRQIKLWRMNDSKAWEVDIF-------RGHYNNVSCVLFHPKSE-VIVSNAEDKSIR 228
DD I++++ + + + F + H +V+CV ++PK ++ S ++D +
Sbjct: 271 CGDD-AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329
Query: 229 LW 230
W
Sbjct: 330 FW 331
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 108 ILSASDDQTIRIWNWQSRNCIC--VLT-GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 164
+ S D+ IRIW + + IC VL+ GH V + P + + SAS D T +W
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW-- 88
Query: 165 SGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED 224
KKN DD + V GH N V V + P ++ + + D
Sbjct: 89 ----KKN------QDDFEC------------VTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 225 KSIRLWDMTKR------TCLNTFRRE-QERFW---SEVIVSNAEDKSIRLW--DMTKRTC 272
KS+ +W++ + + LN+ ++ + W E++ S + D +++L+ + C
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186
Query: 273 LNTFRREQERFWVLVAHPTLNLFAAGHD 300
T + W L P+ A+ D
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSD 214
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 49/225 (21%)
Query: 108 ILSASDDQTIRIWNWQS-------RNCICVLTGHNHYVMCAQFHPT-DDIVVSASLDQTI 159
+LSASDD TI +W+ + + + TGH V +H + + S + DQ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 160 RVWDISGLRKKNVA-PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI 218
+WD R N + P D H V+C+ F+P SE I
Sbjct: 253 MIWDT---RSNNTSKPSHSVD---------------------AHTAEVNCLSFNPYSEFI 288
Query: 219 V-SNAEDKSIRLWDMTK-RTCLNTFRREQERF----WSE----VIVSNAEDKSIRLWDMT 268
+ + + DK++ LWD+ + L++F ++ WS ++ S+ D+ + +WD++
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 269 KRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP 313
K EQ P L GH A + F + P
Sbjct: 349 K------IGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 44/185 (23%)
Query: 66 FVSGGDDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDD 114
+S DD+ I +W+ K IFT GH + +H HE S +DD
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFT--GHTAVVEDVSWHLLHES-LFGSVADD 249
Query: 115 QTIRIWNWQSRNCIC---VLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 170
Q + IW+ +S N + H V C F+P + I+ + S D+T+ +WD+ L+ K
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAEDKSIRL 229
+ F H + + V + P +E I+ S+ D+ + +
Sbjct: 310 -------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNV 344
Query: 230 WDMTK 234
WD++K
Sbjct: 345 WDLSK 349
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW---NW 122
FV G I V+ ++ L+GH I F+ +LSASDD T+RIW N
Sbjct: 220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279
Query: 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 164
S+NC GH+ ++ A + DD V+S S+D ++R+W +
Sbjct: 280 NSQNC---FYGHSQSIVSASW-VGDDKVISCSMDGSVRLWSL 317
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS------EVIV 254
GH+ +S + F+ +++++S ++D ++R+W N F + S + ++
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI 304
Query: 255 SNAEDKSIRLWDMTKRTCL 273
S + D S+RLW + + T L
Sbjct: 305 SCSMDGSVRLWSLKQNTLL 323
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 31 GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVW---NYKQRKCIF 87
G I ++ T K H GP+ + F++ + +S DD +++W N + C +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD 147
GH I + + + ++S S D ++R+W+ + + + + +
Sbjct: 287 ---GHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342
Query: 148 DIVVSASLDQTIRVWDISGLRKKN 171
A +D + V+D+ L K+
Sbjct: 343 QKYAVAFMDGQVNVYDLKKLNSKS 366
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 49/226 (21%)
Query: 107 WILSASDDQTIRIWNWQSR-------NCICVLTGHNHYVMCAQFHPT-DDIVVSASLDQT 158
++LSASDD TI +W+ + + + TGH V +H + + S + DQ
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 159 IRVWDISGLRKKNVA-PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV 217
+ +WD R N + P D H V+C+ F+P SE
Sbjct: 258 LMIWDT---RNNNTSKPSHTVD---------------------AHTAEVNCLSFNPYSEF 293
Query: 218 IV-SNAEDKSIRLWDMTK-RTCLNTFRREQERF----WSE----VIVSNAEDKSIRLWDM 267
I+ + + DK++ LWD+ + L++F ++ WS ++ S+ D+ + +WD+
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 268 TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP 313
+K EQ P L GH A + F + P
Sbjct: 354 SK------IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 393
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 49/226 (21%)
Query: 107 WILSASDDQTIRIWNWQSR-------NCICVLTGHNHYVMCAQFHPT-DDIVVSASLDQT 158
++LSASDD TI +W+ + + + TGH V +H + + S + DQ
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 159 IRVWDISGLRKKNVA-PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV 217
+ +WD R N + P D H V+C+ F+P SE
Sbjct: 260 LMIWDT---RNNNTSKPSHTVD---------------------AHTAEVNCLSFNPYSEF 295
Query: 218 IV-SNAEDKSIRLWDMTK-RTCLNTFRREQERF----WSE----VIVSNAEDKSIRLWDM 267
I+ + + DK++ LWD+ + L++F ++ WS ++ S+ D+ + +WD+
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 268 TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP 313
+K EQ P L GH A + F + P
Sbjct: 356 SK------IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 395
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 49/226 (21%)
Query: 107 WILSASDDQTIRIWNWQSR-------NCICVLTGHNHYVMCAQFHPT-DDIVVSASLDQT 158
++LSASDD TI +W+ + + + TGH V +H + + S + DQ
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 159 IRVWDISGLRKKNVA-PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV 217
+ +WD R N + P D H V+C+ F+P SE
Sbjct: 256 LMIWDT---RNNNTSKPSHTVD---------------------AHTAEVNCLSFNPYSEF 291
Query: 218 IV-SNAEDKSIRLWDMTK-RTCLNTFRREQERF----WSE----VIVSNAEDKSIRLWDM 267
I+ + + DK++ LWD+ + L++F ++ WS ++ S+ D+ + +WD+
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 268 TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP 313
+K EQ P L GH A + F + P
Sbjct: 352 SK------IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHN-QQ 63
S V GL + P + S ++ ++ +W L+ F +H+G V+ + + Q
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 64 PIFVSGG--DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA---SDDQTIR 118
+ +GG D I++WN C+ + H + H Y ++S + +Q +
Sbjct: 301 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLV- 358
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
IW + + + L GH V+ P V SA+ D+T+R+W
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 59/249 (23%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSS------LHNGVIQLWDYRMNTLLEKFDEHEGPVR 55
L + SARV LS++ +ILSS +H+ +++ ++ + TL H V
Sbjct: 193 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL----SGHSQEVC 245
Query: 56 GICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEY--------PW 107
G+ + SGG+D + VW + + L TF H+ PW
Sbjct: 246 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-------QTFTQHQGAVKAVAWCPW 298
Query: 108 ---ILS---ASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161
+L+ + D+ IRIWN S C+ + H+ +C+ I+ S + I
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ--VCS-------ILWSPHYKELIS- 348
Query: 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN 221
G G Q+ +W+ +V +GH + V + P + S
Sbjct: 349 -------------GHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 393
Query: 222 AEDKSIRLW 230
A D+++RLW
Sbjct: 394 AADETLRLW 402
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 42/229 (18%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFD-EHEGP-VRGICFHNQQPIFVSGGDDYKIKVWNYK 81
+L+ + + LW +L+ E G + + + + G ++++W+ +
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHN 135
Q+K + + H + + ++ +ILS+ +R+ + + + L+GH+
Sbjct: 189 QQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV----AEHHVATLSGHS 241
Query: 136 HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW- 194
V ++ P + S D + VW APG G W
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWP--------SAPGEGG---------------WV 278
Query: 195 EVDIFRGHYNNVSCVLFHP-KSEVIVSNA--EDKSIRLWDMTKRTCLNT 240
+ F H V V + P +S V+ + D+ IR+W++ CL+
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 327
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHN-QQ 63
S V GL + P + S ++ ++ +W L+ F +H+G V+ + + Q
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 64 PIFVSGG--DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA---SDDQTIR 118
+ +GG D I++WN C+ + H + H Y ++S + +Q +
Sbjct: 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLV- 347
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
IW + + + L GH V+ P V SA+ D+T+R+W
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 59/249 (23%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSS------LHNGVIQLWDYRMNTLLEKFDEHEGPVR 55
L + SARV LS++ +ILSS +H+ +++ ++ + TL H V
Sbjct: 182 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL----SGHSQEVC 234
Query: 56 GICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEY--------PW 107
G+ + SGG+D + VW + + L TF H+ PW
Sbjct: 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-------QTFTQHQGAVKAVAWCPW 287
Query: 108 ---ILS---ASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161
+L+ + D+ IRIWN S C+ + H+ +C+ I+ S + I
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ--VCS-------ILWSPHYKELIS- 337
Query: 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN 221
G G Q+ +W+ +V +GH + V + P + S
Sbjct: 338 -------------GHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 382
Query: 222 AEDKSIRLW 230
A D+++RLW
Sbjct: 383 AADETLRLW 391
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/229 (18%), Positives = 88/229 (38%), Gaps = 42/229 (18%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFD-EHEGP-VRGICFHNQQPIFVSGGDDYKIKVWNYK 81
+L+ + + LW +L+ E G + + + + G ++++W+ +
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHN 135
Q+K + + H + + ++ +ILS+ +R+ + + + L+GH+
Sbjct: 178 QQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV----AEHHVATLSGHS 230
Query: 136 HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW- 194
V ++ P + S D + VW APG G W
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWP--------SAPGEGG---------------WV 267
Query: 195 EVDIFRGHYNNVSCVLFHP-KSEVIVSNA--EDKSIRLWDMTKRTCLNT 240
+ F H V V + P +S V+ + D+ IR+W++ CL+
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 60 HNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIR 118
+ P+ G I++ N +CI +GH + I FH P +LS S D +R
Sbjct: 118 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 177
Query: 119 IWNWQSRNCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 172
+WN Q+ + + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 178 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 234
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)
Query: 105 YPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 163
+P + A IRI N + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 121 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 180
Query: 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
I + G+ GH + V + E I+S
Sbjct: 181 IQTDTLVAIFGGV-----------------------EGHRDEVLSADYDLLGEKIMSCGM 217
Query: 224 DKSIRLWDMTKRTCLNTFRREQE 246
D S++LW + + +N + +
Sbjct: 218 DHSLKLWRINSKRMMNAIKESYD 240
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 29/190 (15%)
Query: 12 VKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTLLEKF---DEHEGPVRGICFHNQQPIFV 67
+ L FHP+ P +L S+ + ++LW+ + +TL+ F + H V + +
Sbjct: 154 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 213
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127
S G D+ +K+W ++ + + DY P+I Q I ++ +R+
Sbjct: 214 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTRDI 265
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW-------DISGLR--KKNVAPGMGA 178
H +YV C ++ D+++S S + I W DI ++ + NV
Sbjct: 266 ------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 317
Query: 179 DDRQIKLWRM 188
D Q +W M
Sbjct: 318 DYSQCDIWYM 327
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 12/171 (7%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGI 57
+ S V GL + P + S ++ ++ +W L+ F +H+G V+ +
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 58 CFHN-QQPIFVSGG--DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA--- 111
+ Q + +GG D I++WN C+ + H + + + Y ++S
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 261
Query: 112 SDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
+ +Q + IW + + + L GH V+ P V SA+ D+T+R+W
Sbjct: 262 AQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 59/249 (23%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSS------LHNGVIQLWDYRMNTLLEKFDEHEGPVR 55
L + SARV LS++ +ILSS +H+ +++ ++ + TL H V
Sbjct: 102 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL----SGHSQEVC 154
Query: 56 GICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHE--------YPW 107
G+ + SGG+D + VW + + L TF H+ PW
Sbjct: 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-------QTFTQHQGAVKAVAWCPW 207
Query: 108 ---ILS---ASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161
+L+ + D+ IRIWN S C+ + H+ V + P
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSP---------------- 250
Query: 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN 221
K + G G Q+ +W+ +V +GH + V + P + S
Sbjct: 251 ------HYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 302
Query: 222 AEDKSIRLW 230
A D+++RLW
Sbjct: 303 AADETLRLW 311
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 33 IQLWDYRMNTLLEKFD-EHEGP-VRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL 90
+ LW +L+ E G + + + + G ++++W+ +Q+K + +
Sbjct: 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106
Query: 91 GHLDYIRTTFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHNHYVMCAQFH 144
H + + ++ +ILS+ +R+ + + + L+GH+ V ++
Sbjct: 107 SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV----AEHHVATLSGHSQEVCGLRWA 159
Query: 145 PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW-EVDIFRGHY 203
P + S D + VW APG G W + F H
Sbjct: 160 PDGRHLASGGNDNLVNVWP--------SAPGEGG---------------WVPLQTFTQHQ 196
Query: 204 NNVSCVLFHP-KSEVIVSNA--EDKSIRLWDMTKRTCLNT 240
V V + P +S V+ + D+ IR+W++ CL+
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 60 HNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIR 118
+ P+ G I++ N +CI +GH + I FH P +LS S D +R
Sbjct: 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141
Query: 119 IWNWQSRNCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 172
+WN Q+ + + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 198
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)
Query: 105 YPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 163
+P + A IRI N + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144
Query: 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
I + G+ GH + V + E I+S
Sbjct: 145 IQTDTLVAIFGGV-----------------------EGHRDEVLSADYDLLGEKIMSCGM 181
Query: 224 DKSIRLWDMTKRTCLNTFRREQE 246
D S++LW + + +N + +
Sbjct: 182 DHSLKLWRINSKRMMNAIKESYD 204
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 29/190 (15%)
Query: 12 VKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI---FV 67
+ L FHP+ P +L S+ + ++LW+ + +TL+ F EG + + + +
Sbjct: 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127
S G D+ +K+W ++ + + DY P+I Q I ++ +R+
Sbjct: 178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTRDI 229
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW-------DISGLR--KKNVAPGMGA 178
H +YV C ++ D+++S S + I W DI ++ + NV
Sbjct: 230 ------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 281
Query: 179 DDRQIKLWRM 188
D Q +W M
Sbjct: 282 DYSQCDIWYM 291
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIW 120
P+ G I++ N +CI +GH + I FH P +LS S D +R+W
Sbjct: 79 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Query: 121 NWQSRNCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKN 171
N Q+ + + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 139 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 192
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)
Query: 105 YPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 163
+P + A IRI N + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 80 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 139
Query: 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
I + G+ GH + V + E I+S
Sbjct: 140 IQTDTLVAIFGGV-----------------------EGHRDEVLSADYDLLGEKIMSCGM 176
Query: 224 DKSIRLWDMTKRTCLNTFRREQE 246
D S++LW + + +N + +
Sbjct: 177 DHSLKLWRINSKRMMNAIKESYD 199
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 29/190 (15%)
Query: 12 VKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTLLEKF---DEHEGPVRGICFHNQQPIFV 67
+ L FHP+ P +L S+ + ++LW+ + +TL+ F + H V + +
Sbjct: 113 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 172
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127
S G D+ +K+W ++ + + DY P+I Q I ++ +R+
Sbjct: 173 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTRDI 224
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW-------DISGLR--KKNVAPGMGA 178
H +YV C ++ D+++S S + I W DI ++ + NV
Sbjct: 225 ------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 276
Query: 179 DDRQIKLWRM 188
D Q +W M
Sbjct: 277 DYSQCDIWYM 286
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIW 120
P+ G I++ N +CI +GH + I FH P +LS S D +R+W
Sbjct: 83 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 121 NWQSRNCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 172
N Q+ + + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 197
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)
Query: 105 YPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 163
+P + A IRI N + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 84 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143
Query: 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
I + G+ GH + V + E I+S
Sbjct: 144 IQTDTLVAIFGGV-----------------------EGHRDEVLSADYDLLGEKIMSCGM 180
Query: 224 DKSIRLWDMTKRTCLNTFRREQE 246
D S++LW + + +N + +
Sbjct: 181 DHSLKLWRINSKRMMNAIKESYD 203
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 29/190 (15%)
Query: 12 VKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI---FV 67
+ L FHP+ P +L S+ + ++LW+ + +TL+ F EG + + + +
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127
S G D+ +K+W ++ + + DY P+I Q I ++ +R+
Sbjct: 177 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNK---TNRPFI-----SQKIHFPDFSTRDI 228
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW-------DISGLR--KKNVAPGMGA 178
H +YV C ++ D+++S S + I W DI ++ + NV
Sbjct: 229 ------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 280
Query: 179 DDRQIKLWRM 188
D Q +W M
Sbjct: 281 DYSQCDIWYM 290
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIW 120
P+ G I++ N +CI +GH + I FH P +LS S D +R+W
Sbjct: 83 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 121 NWQSRNCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 172
N Q+ + + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 197
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)
Query: 105 YPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 163
+P + A IRI N + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 84 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143
Query: 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223
I + G+ GH + V + E I+S
Sbjct: 144 IQTDTLVAIFGGV-----------------------EGHRDEVLSADYDLLGEKIMSCGM 180
Query: 224 DKSIRLWDMTKRTCLNTFRREQE 246
D S++LW + + +N + +
Sbjct: 181 DHSLKLWRINSKRMMNAIKESYD 203
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 29/190 (15%)
Query: 12 VKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI---FV 67
+ L FHP+ P +L S+ + ++LW+ + +TL+ F EG + + + +
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127
S G D+ +K+W ++ + + DY P+I Q I ++ +R+
Sbjct: 177 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTRDI 228
Query: 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW-------DISGLR--KKNVAPGMGA 178
H +YV C ++ D+++S S + I W DI ++ + NV
Sbjct: 229 ------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 280
Query: 179 DDRQIKLWRM 188
D Q +W M
Sbjct: 281 DYSQCDIWYM 290
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 44/185 (23%)
Query: 66 FVSGGDDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDD 114
+S DD+ + +W+ K IFT GH + +H HE S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHES-LFGSVADD 251
Query: 115 QTIRIWNWQSRNCI---CVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 170
Q + IW+ +S ++ H V C F+P + I+ + S D+T+ +WD+ L+ K
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAEDKSIRL 229
+ F H + + V + P +E I+ S+ D+ + +
Sbjct: 312 -------------------------LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 230 WDMTK 234
WD++K
Sbjct: 347 WDLSK 351
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 27/227 (11%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEK-------FDEHEGPVRGICFHN-QQPIFVSGGDDYKI 75
+LS+ + + LWD K F H V + +H + +F S DD K+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 76 KVWNYKQR---KCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQTIRIWNWQSRNC-ICV 130
+W+ + K + H + F+ +IL + S D+T+ +W+ ++ +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 131 LTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN 189
H + + P ++ I+ S+ D+ + VWD+S + ++ A A+D +L
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA--EDAEDGPPEL---- 368
Query: 190 DSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKR 235
+ I GH +S ++P VI S +ED +++W M +
Sbjct: 369 ------LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 44/181 (24%)
Query: 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCV 209
++SAS D T+ +WDI N P G ++ D+KA IF GH V V
Sbjct: 195 LLSASDDHTVCLWDI------NAGPKEG---------KIVDAKA----IFTGHSAVVEDV 235
Query: 210 LFHPKSEVIV-SNAEDKSIRLWDMTKRT----------------CLNTFRREQERFWSEV 252
+H E + S A+D+ + +WD T CL +F E +
Sbjct: 236 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL-SFNPYSEF----I 290
Query: 253 IVSNAEDKSIRLWDMTK-RTCLNTFRREQERFWVL--VAHPTLNLFAAGHDAGMVVFKFE 309
+ + + DK++ LWD+ + L+TF ++ + + H L ++G D + V+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 310 R 310
+
Sbjct: 351 K 351
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 44/185 (23%)
Query: 66 FVSGGDDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDD 114
+S DD+ + +W+ K IFT GH + +H HE S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHES-LFGSVADD 251
Query: 115 QTIRIWNWQSRNCI---CVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 170
Q + IW+ +S ++ H V C F+P + I+ + S D+T+ +WD+ L+ K
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAEDKSIRL 229
+ F H + + V + P +E I+ S+ D+ + +
Sbjct: 312 -------------------------LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNV 346
Query: 230 WDMTK 234
WD++K
Sbjct: 347 WDLSK 351
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 27/222 (12%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEK-------FDEHEGPVRGICFHN-QQPIFVSGGDDYKI 75
+LS+ + + LWD K F H V + +H + +F S DD K+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 76 KVWNYKQR---KCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQTIRIWNWQSRNC-ICV 130
+W+ + K + H + F+ +IL + S D+T+ +W+ ++ +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 131 LTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN 189
H + + P ++ I+ S+ D+ + VWD+S + ++ A A+D +L
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA--EDAEDGPPEL---- 368
Query: 190 DSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLW 230
+ I GH +S ++P VI S +ED ++W
Sbjct: 369 ------LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 44/181 (24%)
Query: 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCV 209
++SAS D T+ +WDI N P G ++ D+KA IF GH V V
Sbjct: 195 LLSASDDHTVCLWDI------NAGPKEG---------KIVDAKA----IFTGHSAVVEDV 235
Query: 210 LFHPKSEVIV-SNAEDKSIRLWDMTKRT----------------CLNTFRREQERFWSEV 252
+H E + S A+D+ + +WD T CL +F E +
Sbjct: 236 AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCL-SFNPYSEF----I 290
Query: 253 IVSNAEDKSIRLWDMTK-RTCLNTFRREQERFWVL--VAHPTLNLFAAGHDAGMVVFKFE 309
+ + + DK++ LWD+ + L+TF ++ + + H L ++G D + V+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 310 R 310
+
Sbjct: 351 K 351
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 27 SLHNGVI--QLWD-----YRMNTLLEKFDEHEGPV---RGICFHNQQPIFVSGGDDYKIK 76
S +GV+ WD ++ +L+ H V + + F + F++ D IK
Sbjct: 111 SFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK--FLTASADKTIK 168
Query: 77 VWNYKQRKCIFTLLG-HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHN 135
+W + K I T G H D +R + +I S S+D I++ + + + + GH
Sbjct: 169 LW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 136 HYVMCAQFHPTDDIVVSASLDQTIRVW 162
+V C + P DI VS D+T+R+W
Sbjct: 226 SFVYCIKLLPNGDI-VSCGEDRTVRIW 251
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 29/207 (14%)
Query: 131 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD----ISGLRKKNVAPG----------- 175
L GH V F D +V+S S D+T +VW + L+ N +
Sbjct: 100 LIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK 157
Query: 176 --MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT 233
+ D+ IKLW+ ND + F G +N+V L +S + D I+L D
Sbjct: 158 FLTASADKTIKLWQ-NDKV---IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXH 213
Query: 234 KRTCLNTFRREQERFW------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLV 287
L T+ + + + IVS ED+++R+W + W +
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273
Query: 288 AHPTLNLFAAGHDAGMVVFKFERERPA 314
++ D + +F E+ R A
Sbjct: 274 CXSNGDIIVGSSDNLVRIFSQEKSRWA 300
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 57 ICFHNQQPI-FVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQ 115
+ F +P +SG DD + ++ K T H ++ + ++ + S D
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212
Query: 116 TIRIWNWQSRNCICVL-------TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR 168
TI ++N V H+ V + P + SAS D+TI++W+++ L+
Sbjct: 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Query: 169 -KKNVAPGMGADDRQIKL 185
+K + G +D+Q+ +
Sbjct: 273 VEKTIPVGTRIEDQQLGI 290
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 24/207 (11%)
Query: 31 GVIQLWDYRMNT--LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK--IKVWNYKQRKCI 86
G +++WD T L GPV+ I + ++ + G+ + V+ +
Sbjct: 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 140
Query: 87 FTLLGHLDYIRTTFFHHEYPW-ILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP 145
L G + + F P+ I+S SDD T+ I+ H +V +++P
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 146 TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNN 205
+ S D TI +++ G D + ++ + K H +
Sbjct: 201 DGSLFASTGGDGTIVLYN-------------GVDGTKTGVFEDDSLKN------VAHSGS 241
Query: 206 VSCVLFHPKSEVIVSNAEDKSIRLWDM 232
V + + P I S + DK+I++W++
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNV 268
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235
+G + IK+ N + E+D + H + ++ + F P E ++S+++D +++W +
Sbjct: 114 LGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 236 TCLNTFRREQERFWSEVIV-------SNAEDKSIRLWDMTKRTCLNTFRREQ 280
+ T + I+ S + D +IRLW+ T ++TF R++
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNY 80
R +IL + G I++ D N E H + + F +S D ++K+W+
Sbjct: 110 RRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 81 KQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120
K TL+GH + +LSAS D TIR+W
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 38/248 (15%)
Query: 92 HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 151
H+ I F ++S+S D ++IW+ + + L GH V V+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 152 SASLDQTIRVWDI-SGL------RKKNVAPGMGA------DDRQIKLWRMNDSKAWEVDI 198
SASLD TIR+W+ +G RK+N G+ + DRQ+ + E
Sbjct: 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257
Query: 199 FRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTC-LNTFRREQERFWSEVIVSNA 257
+ G Y + H + V N K + +K TC N+ + + I +
Sbjct: 258 Y-GKY----VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN--ANYIYAGY 310
Query: 258 EDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLF--------AAGHDAGM---VVF 306
E+ + WD+ C F + P N++ ++G D + ++
Sbjct: 311 ENGMLAQWDLRSPEC------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364
Query: 307 KFERERPA 314
E ERPA
Sbjct: 365 DPESERPA 372
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235
+G + IK+ N + E+D + H + ++ + F P E ++S+++D +++W +
Sbjct: 111 LGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 236 TCLNTFRREQERFWSEVIV-------SNAEDKSIRLWDMTKRTCLNTFRREQ 280
+ T + I+ S + D +IRLW+ T ++TF R++
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 220
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNY 80
R +IL + G I++ D N E H + + F +S D ++K+W+
Sbjct: 107 RRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 81 KQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120
K TL+GH + +LSAS D TIR+W
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 38/248 (15%)
Query: 92 HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 151
H+ I F ++S+S D ++IW+ + + L GH V V+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 152 SASLDQTIRVWDI-SGL------RKKNVAPGMGA------DDRQIKLWRMNDSKAWEVDI 198
SASLD TIR+W+ +G RK+N G+ + DRQ+ + E
Sbjct: 195 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 254
Query: 199 FRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTC-LNTFRREQERFWSEVIVSNA 257
+ G Y + H + V N K + +K TC N+ + + I +
Sbjct: 255 Y-GKY----VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN--ANYIYAGY 307
Query: 258 EDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLF--------AAGHDAGM---VVF 306
E+ + WD+ C F + P N++ ++G D + ++
Sbjct: 308 ENGMLAQWDLRSPEC------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIIS 361
Query: 307 KFERERPA 314
E ERPA
Sbjct: 362 DPESERPA 369
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 33/177 (18%)
Query: 108 ILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGL 167
IL ASD + +W + V C H DDIV + S+ SG
Sbjct: 96 ILVASDSGAVELWELDENETLIVSK------FCKYEH--DDIVSTVSVLS-------SGT 140
Query: 168 RKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKS 226
+ + G+ D IK+W + + +R H V+CV P K V +S +ED
Sbjct: 141 QAVS-----GSKDICIKVWDLAQQVV--LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR 193
Query: 227 IRLWDM------TKRTCLNTFRREQERFW----SEVIVSNAEDKSIRLWDMTKRTCL 273
I LWD ++ C W SEV V E+ ++ L D +C+
Sbjct: 194 ILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 24 ILSSLHNGVIQLWDYRMNTLL--EKFD--EHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79
IL + +G ++LW+ N L KF EH+ V + + VSG D IKVW+
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 80 YKQRKCIFTLLGHLDYIRTTFFH-HEYPWILSASDDQTIRIWN 121
Q+ + + H + H+ LS S+D I +W+
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 38/180 (21%)
Query: 69 GGDDYKIKVWNYKQRKCI----FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124
D +++W + + + F H D + T +S S D I++W+
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 125 RNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKKN----VAPGMGAD 179
+ + H V C P D + +S S D I +WD + + APG
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY--- 215
Query: 180 DRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTKRTCL 238
+ S AW HP +SEV V E+ ++ L D +C+
Sbjct: 216 --------LPTSLAW-----------------HPQQSEVFVFGDENGTVSLVDTKSTSCV 250
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 24 ILSSLHNGVIQLWDY--RMNTLLEKFD--EHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79
IL + +G ++LW+ + + L+ KF EH+ V+ + + VSGG D+ +KVW+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 80 YKQRKCIFTLLGHLDYI--------RTTFFHHEYPWILSASDDQTIRIWN 121
Q+ + + H + + T F LS +D I +W+
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIF-------LSCGEDGRILLWD 210
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 51 EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCI----FTLLGHLDYIRTTFFHHEYP 106
E V + + +++ I V+ D +++W +++ + F H D ++T +
Sbjct: 94 EAGVTDVAWVSEKGILVAS-DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 107 WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWD 163
+S D ++++W+ + + H+ V C P D I +S D I +WD
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICF-HNQQPIFVSGG 70
VK LS +S + +++WD +L+ ++ H V + + IF+S G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 71 DDYKIKVWNYKQRK 84
+D +I +W+ ++ K
Sbjct: 202 EDGRILLWDTRKPK 215
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 177 GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTK 234
G D +K+W ++ + + H + V+CV P K + +S ED I LWD K
Sbjct: 157 GGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 134 HNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNV------------AP------ 174
H + V Q++P D + S+S D+T++VWD + L+ +V +P
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 175 --GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE-DKSIRLWD 231
+G +++L + I +GH + V + P+ + I++ A D ++LWD
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSC--SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 232 MTKRT-CLNTF 241
+ + + CL T
Sbjct: 216 VRRASGCLITL 226
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 28/176 (15%)
Query: 12 VKGLSFHPKRPWILSSLH-NGVIQLWDYR-MNTLLEKFDEHEGP---------------V 54
+ +S+ P+ +IL++ + ++LWD R + L D+H G V
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 55 RGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGH--------LDYIRTTFFHHEYP 106
G+CF + ++ G D ++++WN + G L + + E+
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV 308
Query: 107 WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
++ S TI ++ S I +L GH V C F + S S D I W
Sbjct: 309 FVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 60/255 (23%)
Query: 26 SSLHNGVIQLWDYRMNTL----LEKFDE-----HEGPVRGICFHNQQPIFVSGGDDYKIK 76
SS + +++WD NTL + F+E H PV + + G K++
Sbjct: 117 SSSFDKTLKVWD--TNTLQTADVFNFEETVYSHHMSPVS-----TKHCLVAVGTRGPKVQ 169
Query: 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQTIRIWNWQ-SRNCICVL--- 131
+ + K C L GH I + Y +IL +AS D +++W+ + + C+ L
Sbjct: 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229
Query: 132 ------------TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS-------------- 165
T HN V F +++ D +R+W+ S
Sbjct: 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN 289
Query: 166 ----GLRKKNVAPGMGAD------DRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS 215
GL K V+ G ++ I ++ + + ++ + +GHY V C +F
Sbjct: 290 NSKKGL-KFTVSCGCSSEFVFVPYGSTIAVYTVYSGE--QITMLKGHYKTVDCCVFQSNF 346
Query: 216 EVIVSNAEDKSIRLW 230
+ + S + D +I W
Sbjct: 347 QELYSGSRDCNILAW 361
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEY---PWILSASDDQTIR 118
FV+GG D +K+W Y + TL GH D++R + ++ S S D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGA 178
IW + T ++ + P D++ AS W +SG NV G
Sbjct: 233 IWTQDNEQGPWKKT-----LLKEEKFP--DVLWRAS-------WSLSG----NVLALSGG 274
Query: 179 DDRQIKLWRMNDSKAWE 195
D++ + LW+ N WE
Sbjct: 275 DNK-VTLWKENLEGKWE 290
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEY---PWILSASDDQTIR 118
FV+GG D +K+W Y + TL GH D++R + ++ S S D+T
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGA 178
IW + T ++ + P D++ AS W +SG NV G
Sbjct: 235 IWTQDNEQGPWKKT-----LLKEEKFP--DVLWRAS-------WSLSG----NVLALSGG 276
Query: 179 DDRQIKLWRMNDSKAWE 195
D++ + LW+ N WE
Sbjct: 277 DNK-VTLWKENLEGKWE 292
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 15/167 (8%)
Query: 12 VKGLSFHPKR-PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICF-----HNQQPI 65
V+ + F P ++++ + I +D + L+ ++ + PV+G F +Q+
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-- 266
Query: 66 FVSGGDDYKIKVWNYKQRKCI--FTL-LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW 122
F + G D I+VW+ KC+ +TL L + I+S S D T+ +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169
+ ++GHN + +P ++S S D I W S + +
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 369
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 26/118 (22%)
Query: 209 VLFHPKS-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF--------W--SEVIVSNA 257
V F P S E +++ D+ I +D L +QE W S+ +
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 258 EDKSIRLWDMTKRTCLNTFRREQE---------------RFWVLVAHPTLNLFAAGHD 300
D +IR+WD+T C+ + +++ R L TLN + GHD
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEYPWIL------SASDDQ 115
FV+GG D +K+W Y + TL GH D++R + P +L S S D+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYXASVSQDR 229
Query: 116 TIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPG 175
T IW + T ++ + P D++ AS W +SG NV
Sbjct: 230 TCIIWTQDNEQGPWKKT-----LLKEEKFP--DVLWRAS-------WSLSG----NVLAL 271
Query: 176 MGADDRQIKLWRMNDSKAWE 195
G D++ + LW+ N WE
Sbjct: 272 SGGDNK-VTLWKENLEGKWE 290
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVI 253
GH ++ V ++ + +++ S ++D S +W L T WS +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 254 VSNAEDKSIRLWDMTKRTCLNTFR 277
V+ + D SI+LWD++ C+ T++
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWK 113
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 28/113 (24%)
Query: 131 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW-DISGLRKKNVAPGMGADDRQIKLWRMN 189
LTGH + +++ D++ S S D + VW ++G R + D +W +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL------DGHTGTIWSI- 80
Query: 190 DSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242
+VD F ++ V+ + D SI+LWD++ C+ T++
Sbjct: 81 -----DVDCF---------------TKYCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 89 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDD 148
L GH + ++ E + S S D + +W + + L GH +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 149 IVVSASLDQTIRVWDIS 165
V+ S D +I++WD+S
Sbjct: 88 YCVTGSADYSIKLWDVS 104
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 36/85 (42%)
Query: 46 KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEY 105
K HE P+ + ++ + + S D VW + + TL GH I +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 106 PWILSASDDQTIRIWNWQSRNCICV 130
+ ++ S D +I++W+ + C+
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVAT 111
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 128 ICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDI--SGLRKKNVAPGMGADDRQIK 184
+ ++ GH V+ + P D+++ S S D T+ VW+I GL P
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP---------- 123
Query: 185 LWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKRTCLNTFRR 243
V GH V V +HP ++ V++S D I +WD+ + T
Sbjct: 124 -----------VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172
Query: 244 EQER------FWSE---VIVSNAEDKSIRLWDMTKRTCLNTFRREQE 281
+ WS +I ++ DK +R+ + K T + R E
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEY---PWILSASDDQTIR 118
FV+GG D +K+W Y + TL GH D++R + ++ S S D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGA 178
IW + T ++ + P D++ AS W +SG NV G
Sbjct: 233 IWTQDNEQGPWKKT-----LLKEEKFP--DVLWRAS-------WSLSG----NVLALSGG 274
Query: 179 DDRQIKLWRMNDSKAWE 195
D++ + LW+ N WE
Sbjct: 275 DNK-VTLWKENLEGKWE 290
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 66 FVSGGDDYKIKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEY---PWILSASDDQTIR 118
FV+GG D +K+W Y + TL GH D++R + ++ S S D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGA 178
IW + T ++ + P D++ AS W +SG NV G
Sbjct: 233 IWTQDNEQGPWKKT-----LLKEEKFP--DVLWRAS-------WSLSG----NVLALSGG 274
Query: 179 DDRQIKLWRMNDSKAWE 195
D++ + LW+ N WE
Sbjct: 275 DNK-VTLWKENLEGKWE 290
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 20 KRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFH-NQQPIFVSGGDDYK 74
+ P IL+ G +++WD+R + + P+ + H NQQ + +GG D
Sbjct: 201 RTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGM 260
Query: 75 IKVWNYKQRKCIFTLL-GHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQS 124
+ +W+ +Q +LL H + FH P + + S+D + +W+W +
Sbjct: 261 LSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGS--LWHWDA 310
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Query: 12 VKGLSFHPKR-PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICF-----HNQQPI 65
V+ + F P ++++ + I +D + L+ ++ + PV+G F +Q+
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-- 266
Query: 66 FVSGGDDYKIKVWNYKQRKCI--FTL-LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW 122
F + G D I+VW+ KC+ +TL L + I+S S D T+ +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162
+ ++GHN + +P ++S S D I W
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 26/118 (22%)
Query: 209 VLFHPKS-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF--------W--SEVIVSNA 257
V F P S E +++ D+ I +D L +QE W S+ +
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 258 EDKSIRLWDMTKRTCLNTFRREQE---------------RFWVLVAHPTLNLFAAGHD 300
D +IR+WD+T C+ + +++ R L TLN + GHD
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 31 GVIQLWDYRMNTLLE--KFDEHEGPVR--GIC-FHNQQPIFVSGGDDYK-IKVWNYKQRK 84
G+I +WD R N L+ F +H P+ +C F+ + + V GG + +WN+ +
Sbjct: 236 GIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294
Query: 85 CIFTLL 90
C + +
Sbjct: 295 CQYAFI 300
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From
Pseudomonas Syringae Pv. Phaseolicola 1448a
Length = 233
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 681 PVAEAETNWPLLTVTKKMSSVGCEEIFYAGTGALLCREADHVI--LFDVQQKRALAQVKV 738
P+++ WP+ + + V +++F TGAL + ++ + + Q AQV V
Sbjct: 8 PMSKPLVRWPINPLRTAVIVVDMQKVFCEPTGALYVKSTADIVQPIQKLLQAARAAQVMV 67
Query: 739 AKCRHVVTKKMSSVGCEEIFYAGTGALLCREADHVILFDVQQKRALAQVKVAKCRHVLYN 798
RH+V S G Y +L R DV+ ALA + V+ +
Sbjct: 68 IYLRHIVRGDGSDTGRMRDLYPNVDQILARHDP-----DVEVIEALA----PQSDDVIVD 118
Query: 799 KGEEIFYAG------TGALLCREADHVIL 821
K +FY+G L R+ D +I+
Sbjct: 119 K---LFYSGFHNTDLDTVLRARDVDTIIV 144
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFV 67
V G++FHP + + +G WD T L+ ++ + P+ CF++ IF
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 43/230 (18%)
Query: 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFF--HHEYPW 107
H GPV +C+ + + D K+W+ + I + H ++T + Y
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 108 ILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI--- 164
+++ S D+T++ W+ +S N + VL +P + V A+ ++ + V+ +
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP---MAVVATAERGLIVYQLENQ 200
Query: 165 --------SGLR-----------KKNVAPG--MGADDRQIKLWRMNDSKAWEVDI-FRGH 202
S L+ K+N G +G+ + ++ + +N + + F+ H
Sbjct: 201 PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260
Query: 203 YNN------------VSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNT 240
+N V+ + FHP + + D WD RT L T
Sbjct: 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 268 TKRTCLNTFRR-EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERER 312
T+ T +NTF+R EQE W + HP++ F G G + F ++R
Sbjct: 198 TRATFINTFQRGEQESTWETIPHPSIEEFKYGGPNGFLDL-FTKDR 242
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+ + + L+ P S +G I +WD TL+ +F H I N
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195
Query: 64 PIFVSGGDDYKIKVWNYKQRK 84
+GG D ++ W+ ++ +
Sbjct: 196 TKLWTGGLDNTVRSWDLREGR 216
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSL-HNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+ +F S+ VK + F+ K+ +L+S +NG I +WD MN E + G
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD--MNKCTESPSNYTPLTPGQSMS 163
Query: 61 ----------NQQ--PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDY----------IRT 98
NQ +F S G +W+ K +K + HL Y +
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI----HLSYTSPNSGIKQQLSV 219
Query: 99 TFFHHEYPWILSAS----DDQTIRIWNWQSRNCI--CVLTGHNHYVMCAQF-HPTDDIVV 151
+H + ++ + +D +I IW+ ++ N + GH ++ + H + +++
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 152 SASLDQTIRVWDISGLRKKNVAPGMG 177
S+ D T+ +W+ + + P G
Sbjct: 280 SSGRDNTVLLWNPESAEQLSQFPARG 305
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 67 VSGGD-DYKIKVWNYKQRKCIFTLL--GHLDYIRT-TFFHHEYPWILSASDDQTIRIWNW 122
+G D D I +W+ + L GH I + + H + +LS+ D T+ +WN
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Query: 123 QSRNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRV 161
+S + ++ +F P D+ AS D I V
Sbjct: 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 85/229 (37%), Gaps = 37/229 (16%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRM-NTLLEKFDEHEGPVRGICFHNQQPIFVS 68
ARV LS++ R + S +G I D R+ N + H V G+ + + S
Sbjct: 177 ARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPW------ILSASDDQTIRIWNW 122
GG+D +++W+ + FT H ++ + PW + D+ I WN
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW---CPWQSNLLATGGGTMDKQIHFWN- 290
Query: 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182
TG A+ + D A T +W K + G D
Sbjct: 291 -------AATG-------ARVNTVD-----AGSQVTSLIW---SPHSKEIMSTHGFPDNN 328
Query: 183 IKLWRMNDSK-AWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLW 230
+ +W + S +VDI H V P ++ + A D++++ W
Sbjct: 329 LSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVW 78
LL + D+H G V + ++ I S GDD K+++W
Sbjct: 296 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVW 78
LL + D+H G V + ++ I S GDD K+++W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 315 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 373
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 374 NNFENSTYDLY 384
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVW 78
LL + D+H G V + ++ I S GDD K+++W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 315 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 373
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 374 NNFENSTYDLY 384
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 315 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 373
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 374 NNFENSTYDLY 384
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 11 RVKGLSFHPKRPWILS-SLHNGVIQLWDYRMNTLLEKFDEHEGP---VRGICFH--NQQP 64
RV L +HP P ++ G I LWDY + F + GP + G+ F+ N
Sbjct: 74 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQ 132
Query: 65 IFVS---GGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121
+FVS G + + Q +F DY +L+ D +
Sbjct: 133 LFVSSIRGATTLRDFSGSVIQ---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 189
Query: 122 WQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKN 171
+ I H V A+F+P D ++ ++S+D T+++WD+ ++ KN
Sbjct: 190 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN 240
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 11 RVKGLSFHPKRPWILS-SLHNGVIQLWDYRMNTLLEKFDEHEGP---VRGICFH--NQQP 64
RV L +HP P ++ G I LWDY + F + GP + G+ F+ N
Sbjct: 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQ 133
Query: 65 IFVS---GGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121
+FVS G + + Q +F DY +L+ D +
Sbjct: 134 LFVSSIRGATTLRDFSGSVIQ---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190
Query: 122 WQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKN 171
+ I H V A+F+P D ++ ++S+D T+++WD+ ++ KN
Sbjct: 191 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN 241
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEV 196
W++S +KK V PGMGA + L + D + E+
Sbjct: 145 WEVSNKQKKKVVPGMGAPSNKASLQKKIDPELEEM 179
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 476 GNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLI-----T 530
GN+D A E A + +VW +L A L +G + E K D +++ ++ +
Sbjct: 17 GNLDRAYEFAERCNEPAVWSQLAKAQLQKG--MVKEAIDSYIKADDPSSYMEVVQAANTS 74
Query: 531 GNLEKLKKMMKIA 543
GN E+L K +++A
Sbjct: 75 GNWEELVKYLQMA 87
>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 624
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 476 GNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLI-----T 530
GN+D A E A + +VW +L A L +G + E K D +++ ++ +
Sbjct: 39 GNLDRAYEFAERCNEPAVWSQLAKAQLQKG--MVKEAIDSYIKADDPSSYMEVVQAANTS 96
Query: 531 GNLEKLKKMMKIA 543
GN E+L K +++A
Sbjct: 97 GNWEELVKYLQMA 109
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 476 GNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLI-----T 530
GN+D A E A + +VW +L A L +G + E K D +++ ++ +
Sbjct: 1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKG--MVKEAIDSYIKADDPSSYMEVVQAANTS 1147
Query: 531 GNLEKLKKMMKIA 543
GN E+L K +++A
Sbjct: 1148 GNWEELVKYLQMA 1160
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 243 REQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ-ERFWVLVAHPTLNLFAAGHDA 301
R Q WS V+V ++ED + + + RR R W ++A +F AG
Sbjct: 352 RGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGL 411
Query: 302 GMVVFKFERERPAYTVH 318
VV E P +TVH
Sbjct: 412 REVVM----EEPIFTVH 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,225,768
Number of Sequences: 62578
Number of extensions: 1119197
Number of successful extensions: 4423
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3065
Number of HSP's gapped (non-prelim): 476
length of query: 992
length of database: 14,973,337
effective HSP length: 108
effective length of query: 884
effective length of database: 8,214,913
effective search space: 7261983092
effective search space used: 7261983092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)