Query psy2685
Match_columns 992
No_of_seqs 1071 out of 3941
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:35:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-57 4.2E-62 573.4 63.1 549 2-648 6-779 (814)
2 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-49 5.5E-54 499.5 52.6 554 43-985 5-670 (814)
3 1nr0_A Actin interacting prote 100.0 2E-43 6.8E-48 431.3 58.7 419 2-429 52-609 (611)
4 1nr0_A Actin interacting prote 100.0 2.1E-41 7.3E-46 413.3 53.3 414 6-432 15-568 (611)
5 2ymu_A WD-40 repeat protein; u 100.0 8.8E-41 3E-45 402.9 57.2 410 3-432 10-540 (577)
6 2ymu_A WD-40 repeat protein; u 100.0 2.7E-39 9.4E-44 389.8 56.2 407 2-428 50-577 (577)
7 2ynn_A Coatomer subunit beta'; 100.0 5.9E-40 2E-44 364.3 44.8 285 2-311 6-303 (304)
8 3sfz_A APAF-1, apoptotic pepti 100.0 6.2E-39 2.1E-43 422.5 51.9 419 3-433 609-1160(1249)
9 1vyh_C Platelet-activating fac 100.0 2.6E-39 9.1E-44 375.1 41.2 279 3-307 102-408 (410)
10 1got_B GT-beta; complex (GTP-b 100.0 1.4E-37 4.8E-42 350.9 45.8 278 3-307 49-340 (340)
11 3ow8_A WD repeat-containing pr 100.0 5.6E-38 1.9E-42 351.7 42.0 281 2-308 25-319 (321)
12 4ery_A WD repeat-containing pr 100.0 2E-37 6.7E-42 344.1 45.6 281 3-308 17-310 (312)
13 1pgu_A Actin interacting prote 100.0 1.3E-36 4.4E-41 368.2 50.7 390 2-431 56-614 (615)
14 1pgu_A Actin interacting prote 100.0 2E-36 6.7E-41 366.6 50.8 410 6-432 15-573 (615)
15 2pbi_B Guanine nucleotide-bind 100.0 7E-37 2.4E-41 347.5 43.1 279 2-306 57-353 (354)
16 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-36 4.6E-41 400.3 47.5 421 2-433 650-1209(1249)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-36 1.1E-40 340.6 43.0 318 2-390 8-337 (345)
18 3frx_A Guanine nucleotide-bind 100.0 1.1E-35 3.7E-40 332.4 46.7 296 2-388 10-317 (319)
19 3iz6_a 40S ribosomal protein R 100.0 2.9E-37 9.9E-42 354.0 31.0 285 2-311 59-376 (380)
20 1vyh_C Platelet-activating fac 100.0 5.9E-36 2E-40 346.9 40.6 281 45-386 102-409 (410)
21 2ynn_A Coatomer subunit beta'; 100.0 2.4E-35 8.1E-40 327.2 43.6 284 43-387 5-301 (304)
22 2hes_X YDR267CP; beta-propelle 100.0 1.9E-35 6.4E-40 332.2 41.4 282 2-309 7-327 (330)
23 2xzm_R RACK1; ribosome, transl 100.0 4.5E-35 1.5E-39 330.6 44.5 301 2-388 14-340 (343)
24 1erj_A Transcriptional repress 100.0 6.8E-35 2.3E-39 335.8 45.0 285 6-311 61-390 (393)
25 1r5m_A SIR4-interacting protei 100.0 3.3E-35 1.1E-39 337.7 42.1 337 7-387 43-424 (425)
26 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-34 7.4E-39 365.9 51.6 407 4-433 12-607 (902)
27 3ow8_A WD repeat-containing pr 100.0 2E-34 7E-39 322.7 43.6 286 41-387 22-320 (321)
28 1got_B GT-beta; complex (GTP-b 100.0 8.3E-34 2.8E-38 320.0 45.3 283 41-385 45-340 (340)
29 4gqb_B Methylosome protein 50; 100.0 5.3E-35 1.8E-39 331.0 35.5 279 6-311 27-332 (344)
30 4aow_A Guanine nucleotide-bind 100.0 5.8E-34 2E-38 318.1 43.2 282 3-310 32-337 (340)
31 4g56_B MGC81050 protein; prote 100.0 2.2E-35 7.7E-40 335.6 32.1 280 5-310 38-343 (357)
32 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-33 5.6E-38 357.8 49.8 410 7-429 56-659 (902)
33 3zwl_B Eukaryotic translation 100.0 3E-33 1E-37 314.9 45.3 282 3-310 26-346 (369)
34 1gxr_A ESG1, transducin-like e 100.0 6.7E-34 2.3E-38 316.5 38.3 315 8-386 8-335 (337)
35 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.9E-33 2.4E-37 323.8 47.6 321 3-389 112-443 (445)
36 2pbi_B Guanine nucleotide-bind 100.0 7.3E-33 2.5E-37 314.4 43.2 283 42-385 55-354 (354)
37 3v7d_B Cell division control p 100.0 1.6E-32 5.5E-37 321.8 47.3 305 3-370 115-450 (464)
38 2hes_X YDR267CP; beta-propelle 100.0 1.2E-32 4E-37 309.4 43.3 293 39-388 2-328 (330)
39 3odt_A Protein DOA1; ubiquitin 100.0 9.1E-33 3.1E-37 304.2 40.9 277 2-312 11-298 (313)
40 3iz6_a 40S ribosomal protein R 100.0 4.3E-34 1.5E-38 327.6 31.4 305 31-388 46-375 (380)
41 4ery_A WD repeat-containing pr 100.0 2.2E-32 7.6E-37 303.3 43.8 288 41-387 13-311 (312)
42 3ei3_B DNA damage-binding prot 100.0 7.4E-33 2.5E-37 316.2 41.1 283 2-309 66-381 (383)
43 3dm0_A Maltose-binding peripla 100.0 6.6E-33 2.3E-37 343.3 43.5 280 3-308 376-691 (694)
44 4a11_B DNA excision repair pro 100.0 7.5E-33 2.6E-37 316.6 39.4 295 3-310 37-365 (408)
45 1sq9_A Antiviral protein SKI8; 100.0 3.7E-33 1.3E-37 319.3 35.9 278 3-309 10-394 (397)
46 3vl1_A 26S proteasome regulato 100.0 1.4E-33 4.7E-38 325.7 32.2 346 12-388 59-419 (420)
47 2pm9_A Protein WEB1, protein t 100.0 5.9E-35 2E-39 336.1 20.3 345 10-388 13-414 (416)
48 4e54_B DNA damage-binding prot 100.0 5.5E-34 1.9E-38 332.7 28.7 288 2-313 112-433 (435)
49 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-31 3.5E-36 303.7 44.9 317 41-433 5-337 (345)
50 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-32 1.2E-36 307.6 40.7 337 4-389 3-362 (372)
51 1gxr_A ESG1, transducin-like e 100.0 8.9E-32 3E-36 299.3 41.8 275 4-308 46-335 (337)
52 3frx_A Guanine nucleotide-bind 100.0 1.8E-31 6.2E-36 298.2 44.0 291 42-431 8-317 (319)
53 3k26_A Polycomb protein EED; W 100.0 1.5E-32 5.2E-37 309.2 35.3 302 5-308 14-364 (366)
54 4g56_B MGC81050 protein; prote 100.0 4.8E-33 1.6E-37 316.4 31.3 309 13-389 9-344 (357)
55 4gqb_B Methylosome protein 50; 100.0 8.7E-33 3E-37 312.8 33.0 290 33-390 16-333 (344)
56 3dwl_C Actin-related protein 2 100.0 2.4E-34 8.3E-39 327.3 19.2 336 4-386 6-377 (377)
57 2pm7_B Protein transport prote 100.0 4.5E-32 1.5E-36 299.8 35.5 255 1-309 1-284 (297)
58 4aow_A Guanine nucleotide-bind 100.0 5.1E-31 1.8E-35 294.2 43.9 298 39-389 26-338 (340)
59 3i2n_A WD repeat-containing pr 100.0 3.7E-32 1.3E-36 305.3 34.2 281 3-310 12-353 (357)
60 1r5m_A SIR4-interacting protei 100.0 6.2E-32 2.1E-36 310.4 36.7 274 7-309 106-424 (425)
61 3gre_A Serine/threonine-protei 100.0 2.1E-32 7.3E-37 318.2 32.3 278 2-306 55-436 (437)
62 3vl1_A 26S proteasome regulato 100.0 3.9E-32 1.3E-36 313.5 33.6 275 10-309 98-418 (420)
63 3f3f_A Nucleoporin SEH1; struc 100.0 1E-31 3.4E-36 298.7 35.3 285 3-311 5-338 (351)
64 3dw8_B Serine/threonine-protei 100.0 7.6E-32 2.6E-36 313.5 34.7 287 8-307 27-443 (447)
65 3zwl_B Eukaryotic translation 100.0 1.5E-30 5.2E-35 292.8 44.1 308 43-389 24-347 (369)
66 2xzm_R RACK1; ribosome, transl 100.0 2.5E-30 8.5E-35 291.7 45.5 305 42-432 12-341 (343)
67 1erj_A Transcriptional repress 100.0 1.2E-30 4.1E-35 300.3 42.7 277 49-388 62-389 (393)
68 2pm9_A Protein WEB1, protein t 100.0 1.1E-32 3.6E-37 317.2 22.5 279 7-310 65-414 (416)
69 3dm0_A Maltose-binding peripla 100.0 1.7E-30 5.9E-35 321.6 43.1 305 43-388 374-693 (694)
70 4gga_A P55CDC, cell division c 100.0 1.9E-30 6.4E-35 301.2 40.8 273 12-310 108-395 (420)
71 4ggc_A P55CDC, cell division c 100.0 8.1E-30 2.8E-34 281.6 41.1 274 12-311 28-316 (318)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.7E-30 2E-34 299.0 41.8 273 2-310 152-442 (445)
73 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-32 1.1E-36 324.9 23.0 316 8-388 132-517 (524)
74 3mkq_B Coatomer subunit alpha; 100.0 1.9E-32 6.6E-37 271.6 17.4 176 458-693 1-176 (177)
75 4aez_A CDC20, WD repeat-contai 100.0 5.2E-30 1.8E-34 295.5 40.5 285 7-390 89-382 (401)
76 1yfq_A Cell cycle arrest prote 100.0 5.9E-31 2E-35 294.2 30.8 268 5-303 7-315 (342)
77 3v7d_B Cell division control p 100.0 1.2E-29 4E-34 297.5 42.8 273 2-307 155-459 (464)
78 3jrp_A Fusion protein of prote 100.0 4.1E-30 1.4E-34 290.7 36.6 258 1-310 3-287 (379)
79 3bg1_A Protein SEC13 homolog; 100.0 2.1E-31 7.3E-36 297.2 25.1 251 4-308 8-291 (316)
80 3k26_A Polycomb protein EED; W 100.0 2.4E-30 8.1E-35 291.2 33.2 284 46-387 13-365 (366)
81 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-30 2E-34 298.4 35.2 266 6-309 130-413 (435)
82 1sq9_A Antiviral protein SKI8; 100.0 2E-29 6.7E-34 288.3 38.1 289 43-388 8-395 (397)
83 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-28 3.9E-33 271.4 42.7 280 41-390 8-298 (313)
84 3mmy_A MRNA export factor; mRN 100.0 1.2E-29 4.2E-34 285.3 35.0 273 2-302 32-337 (368)
85 3gre_A Serine/threonine-protei 100.0 9.9E-30 3.4E-34 295.7 34.3 328 16-385 34-437 (437)
86 2pm7_B Protein transport prote 100.0 2.4E-29 8.2E-34 277.9 35.4 266 45-388 3-285 (297)
87 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-31 4.3E-36 313.6 17.6 317 8-371 14-350 (588)
88 3ei3_B DNA damage-binding prot 100.0 1.9E-29 6.4E-34 288.0 34.8 295 37-388 59-382 (383)
89 2j04_B YDR362CP, TAU91; beta p 100.0 8.6E-31 2.9E-35 312.5 24.0 280 4-311 202-518 (524)
90 3i2n_A WD repeat-containing pr 100.0 5E-29 1.7E-33 279.7 35.6 303 45-389 12-354 (357)
91 4h5i_A Guanine nucleotide-exch 100.0 2.2E-29 7.6E-34 287.1 31.0 288 9-389 14-344 (365)
92 3jro_A Fusion protein of prote 100.0 8.5E-30 2.9E-34 318.4 30.0 257 1-309 1-284 (753)
93 4a11_B DNA excision repair pro 100.0 2.3E-29 7.9E-34 287.6 29.9 340 30-430 22-404 (408)
94 4e54_B DNA damage-binding prot 100.0 7.8E-30 2.7E-34 297.5 25.1 294 44-389 112-431 (435)
95 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-28 2E-32 272.9 39.7 310 47-431 4-361 (372)
96 4gga_A P55CDC, cell division c 100.0 2E-27 6.8E-32 275.7 41.6 276 53-391 107-398 (420)
97 3jrp_A Fusion protein of prote 100.0 4.2E-28 1.4E-32 274.2 35.0 262 41-389 1-288 (379)
98 3dwl_C Actin-related protein 2 100.0 3.3E-29 1.1E-33 284.8 25.6 258 47-372 7-272 (377)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.8E-28 2.7E-32 281.8 37.1 262 10-299 5-373 (450)
100 3dw8_B Serine/threonine-protei 100.0 2.3E-28 8E-33 284.0 31.7 307 50-385 27-443 (447)
101 4ggc_A P55CDC, cell division c 100.0 4.4E-27 1.5E-31 259.6 39.6 273 54-389 28-316 (318)
102 4aez_A CDC20, WD repeat-contai 100.0 1.6E-27 5.5E-32 274.6 37.2 240 8-309 133-379 (401)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-29 1.3E-33 287.9 23.3 272 11-309 36-341 (402)
104 4gq1_A NUP37; propeller, trans 100.0 2E-28 6.9E-33 281.9 28.2 297 10-310 16-389 (393)
105 3bg1_A Protein SEC13 homolog; 100.0 1.8E-28 6.3E-33 273.4 25.0 269 46-388 8-293 (316)
106 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-27 2.3E-31 272.4 38.4 276 48-391 130-417 (435)
107 3mmy_A MRNA export factor; mRN 100.0 5.2E-27 1.8E-31 263.8 34.9 279 35-372 23-336 (368)
108 2xyi_A Probable histone-bindin 100.0 2E-27 6.7E-32 276.9 30.2 261 3-309 122-409 (430)
109 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-27 1.2E-31 261.9 30.7 300 46-389 6-338 (351)
110 1yfq_A Cell cycle arrest prote 100.0 1.6E-26 5.4E-31 258.2 32.0 275 46-372 6-313 (342)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 3.8E-27 1.3E-31 271.2 27.2 244 3-272 75-345 (402)
112 4h5i_A Guanine nucleotide-exch 100.0 4.7E-27 1.6E-31 267.9 26.5 245 4-309 68-342 (365)
113 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-26 1.8E-30 258.0 34.7 314 3-389 13-337 (355)
114 3lrv_A PRE-mRNA-splicing facto 100.0 6.1E-27 2.1E-31 263.8 25.2 255 16-305 43-327 (343)
115 3bws_A Protein LP49; two-domai 99.9 5.4E-25 1.8E-29 254.9 40.3 332 8-388 59-432 (433)
116 2j04_A TAU60, YPL007P, hypothe 99.9 2.2E-27 7.5E-32 277.8 18.6 246 7-300 83-350 (588)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.7E-25 1.3E-29 259.0 36.2 286 52-388 5-391 (450)
118 3bws_A Protein LP49; two-domai 99.9 7.1E-25 2.4E-29 253.9 37.7 275 5-309 119-431 (433)
119 2xyi_A Probable histone-bindin 99.9 2.5E-25 8.4E-30 259.1 33.2 300 11-389 47-411 (430)
120 1l0q_A Surface layer protein; 99.9 1E-23 3.5E-28 240.7 44.6 261 22-313 3-278 (391)
121 3jro_A Fusion protein of prote 99.9 1.1E-25 3.9E-30 281.0 29.0 258 44-388 2-285 (753)
122 1l0q_A Surface layer protein; 99.9 1.7E-23 5.9E-28 238.8 41.3 321 3-370 26-366 (391)
123 1nir_A Nitrite reductase; hemo 99.9 5.2E-23 1.8E-27 246.8 41.1 328 16-390 144-516 (543)
124 4gq1_A NUP37; propeller, trans 99.9 1.4E-24 4.7E-29 249.9 24.6 215 15-232 95-387 (393)
125 2w18_A PALB2, fancn, partner a 99.9 1.1E-23 3.6E-28 232.8 29.2 267 12-308 42-355 (356)
126 3vu4_A KMHSV2; beta-propeller 99.9 4.5E-23 1.5E-27 233.8 33.7 308 35-433 3-338 (355)
127 2w18_A PALB2, fancn, partner a 99.9 6.5E-24 2.2E-28 234.4 24.7 195 10-232 112-355 (356)
128 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-23 3.9E-28 237.1 26.1 230 10-266 77-330 (343)
129 2ecf_A Dipeptidyl peptidase IV 99.9 6.6E-22 2.3E-26 246.0 32.7 344 9-386 36-457 (741)
130 1k32_A Tricorn protease; prote 99.9 6.5E-21 2.2E-25 246.6 40.4 371 3-428 46-499 (1045)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.5E-22 2.2E-26 229.4 27.2 296 10-364 63-410 (415)
132 3vgz_A Uncharacterized protein 99.9 1.4E-19 4.7E-24 202.8 38.5 269 9-301 40-334 (353)
133 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-21 5.3E-26 241.8 24.6 335 10-372 17-430 (723)
134 1nir_A Nitrite reductase; hemo 99.9 4.1E-20 1.4E-24 221.7 36.1 267 2-298 172-496 (543)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.9E-21 1.7E-25 222.0 27.1 258 4-293 112-410 (415)
136 1k32_A Tricorn protease; prote 99.9 7.3E-21 2.5E-25 246.1 31.2 386 3-432 197-638 (1045)
137 2ojh_A Uncharacterized protein 99.9 2.1E-20 7.1E-25 202.5 25.5 267 27-372 18-292 (297)
138 3u4y_A Uncharacterized protein 99.9 5.5E-19 1.9E-23 196.5 35.5 289 15-390 3-306 (331)
139 2z3z_A Dipeptidyl aminopeptida 99.9 9.7E-20 3.3E-24 225.2 31.4 342 12-389 28-436 (706)
140 2ojh_A Uncharacterized protein 99.8 6.2E-20 2.1E-24 198.8 23.3 247 3-301 35-292 (297)
141 2ecf_A Dipeptidyl peptidase IV 99.8 5.3E-19 1.8E-23 219.8 33.4 327 51-432 36-460 (741)
142 1ri6_A Putative isomerase YBHE 99.8 2.7E-18 9.2E-23 190.9 34.0 251 22-299 5-295 (343)
143 2z3z_A Dipeptidyl aminopeptida 99.8 3.4E-18 1.2E-22 211.3 33.3 260 10-299 82-419 (706)
144 1xfd_A DIP, dipeptidyl aminope 99.8 3.4E-19 1.2E-23 220.7 22.4 324 53-420 18-428 (723)
145 3vgz_A Uncharacterized protein 99.8 2.6E-17 8.9E-22 184.1 35.5 265 50-372 39-334 (353)
146 1pby_B Quinohemoprotein amine 99.8 1.4E-17 4.9E-22 184.6 32.4 252 22-279 2-320 (337)
147 1ri6_A Putative isomerase YBHE 99.8 3.7E-17 1.3E-21 181.7 35.0 264 7-292 35-334 (343)
148 3hfq_A Uncharacterized protein 99.8 2.2E-16 7.5E-21 177.1 38.7 277 23-388 4-317 (347)
149 3u4y_A Uncharacterized protein 99.8 7.8E-17 2.7E-21 179.1 32.8 243 4-272 35-307 (331)
150 1z68_A Fibroblast activation p 99.8 3.9E-18 1.3E-22 211.4 23.8 346 13-388 19-443 (719)
151 3o4h_A Acylamino-acid-releasin 99.8 2E-17 6.7E-22 200.0 28.3 253 9-302 21-303 (582)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 1.9E-18 6.6E-23 201.4 18.0 199 8-235 35-279 (434)
153 1jmx_B Amine dehydrogenase; ox 99.8 1.4E-16 4.7E-21 177.7 31.0 259 14-279 4-335 (349)
154 3hfq_A Uncharacterized protein 99.8 3.6E-16 1.2E-20 175.4 34.4 248 6-308 36-315 (347)
155 1pby_B Quinohemoprotein amine 99.8 5.1E-16 1.7E-20 172.0 32.1 260 64-390 2-312 (337)
156 3pe7_A Oligogalacturonate lyas 99.8 1.8E-16 6.1E-21 180.3 29.0 269 3-300 24-370 (388)
157 3scy_A Hypothetical bacterial 99.8 4.6E-15 1.6E-19 167.4 39.8 294 18-388 10-337 (361)
158 4a5s_A Dipeptidyl peptidase 4 99.7 1.2E-16 4.2E-21 198.9 28.3 348 10-387 17-448 (740)
159 3scy_A Hypothetical bacterial 99.7 1.4E-15 4.7E-20 171.8 34.4 235 8-299 48-324 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.7 1.2E-16 4.2E-21 186.1 22.1 159 8-167 91-279 (434)
161 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.3E-14 4.4E-19 164.6 37.8 288 23-389 4-342 (365)
162 1jmx_B Amine dehydrogenase; ox 99.7 3E-15 1E-19 166.9 31.4 270 56-390 4-327 (349)
163 4a5s_A Dipeptidyl peptidase 4 99.7 8.2E-15 2.8E-19 182.4 32.4 276 53-387 18-350 (740)
164 3pe7_A Oligogalacturonate lyas 99.7 5.1E-15 1.7E-19 168.3 27.9 303 35-387 14-381 (388)
165 1z68_A Fibroblast activation p 99.7 5.2E-16 1.8E-20 192.2 21.2 328 56-433 20-445 (719)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.4E-14 4.9E-19 164.2 29.5 250 9-309 39-340 (365)
167 3o4h_A Acylamino-acid-releasin 99.7 3.2E-15 1.1E-19 180.5 23.3 253 50-372 20-302 (582)
168 1q7f_A NHL, brain tumor CG1071 99.7 9.2E-14 3.1E-18 151.3 32.6 242 7-312 27-282 (286)
169 3azo_A Aminopeptidase; POP fam 99.6 1.5E-14 5.2E-19 177.2 26.9 277 5-301 19-357 (662)
170 3c5m_A Oligogalacturonate lyas 99.6 4.9E-15 1.7E-19 168.3 20.7 259 12-300 38-370 (396)
171 2oiz_A Aromatic amine dehydrog 99.6 1E-13 3.6E-18 157.2 31.0 267 20-293 14-360 (361)
172 2dg1_A DRP35, lactonase; beta 99.6 1.4E-13 4.8E-18 153.2 27.2 262 9-301 5-300 (333)
173 1qks_A Cytochrome CD1 nitrite 99.6 1.2E-11 4.1E-16 148.2 44.1 322 19-387 165-537 (567)
174 3fvz_A Peptidyl-glycine alpha- 99.6 4.5E-13 1.5E-17 149.7 29.5 245 9-309 23-321 (329)
175 2xdw_A Prolyl endopeptidase; a 99.6 3.1E-13 1.1E-17 167.3 31.0 232 8-298 123-397 (710)
176 3e5z_A Putative gluconolactona 99.6 6.4E-13 2.2E-17 145.6 29.6 244 3-311 21-287 (296)
177 2gop_A Trilobed protease; beta 99.6 1.1E-12 3.7E-17 146.7 30.6 252 10-302 15-321 (347)
178 3c5m_A Oligogalacturonate lyas 99.6 9.3E-14 3.2E-18 157.8 21.9 323 34-387 13-381 (396)
179 2z2n_A Virginiamycin B lyase; 99.5 3E-11 1E-15 131.3 38.5 272 5-310 10-295 (299)
180 3azo_A Aminopeptidase; POP fam 99.5 1.6E-13 5.5E-18 168.0 21.3 240 4-273 62-373 (662)
181 3fvz_A Peptidyl-glycine alpha- 99.5 7.8E-12 2.7E-16 139.6 31.0 262 51-388 23-322 (329)
182 2oiz_A Aromatic amine dehydrog 99.5 4.5E-12 1.6E-16 143.7 28.3 270 62-364 14-360 (361)
183 2xdw_A Prolyl endopeptidase; a 99.5 1.5E-11 5.1E-16 152.2 32.8 287 19-390 81-416 (710)
184 1q7f_A NHL, brain tumor CG1071 99.5 1.5E-11 5.2E-16 133.6 28.1 197 8-235 75-281 (286)
185 2gop_A Trilobed protease; beta 99.5 6.9E-12 2.4E-16 140.0 25.7 226 10-268 59-330 (347)
186 3no2_A Uncharacterized protein 99.5 2.1E-11 7.2E-16 132.8 28.6 214 62-300 4-232 (276)
187 2bkl_A Prolyl endopeptidase; m 99.4 4.1E-12 1.4E-16 156.9 23.3 250 18-297 76-379 (695)
188 1rwi_B Serine/threonine-protei 99.4 1.6E-11 5.4E-16 131.9 23.6 238 11-310 25-264 (270)
189 2qc5_A Streptogramin B lactona 99.4 6.9E-10 2.4E-14 120.4 36.3 269 7-307 17-297 (300)
190 2dg1_A DRP35, lactonase; beta 99.4 3.3E-10 1.1E-14 125.8 34.3 222 3-244 38-272 (333)
191 3e5z_A Putative gluconolactona 99.4 1E-10 3.5E-15 127.9 29.7 254 41-372 17-277 (296)
192 3no2_A Uncharacterized protein 99.4 4.5E-11 1.6E-15 130.1 26.2 193 20-244 4-205 (276)
193 2bkl_A Prolyl endopeptidase; m 99.4 1.3E-11 4.5E-16 152.3 23.2 237 7-272 118-400 (695)
194 1yr2_A Prolyl oligopeptidase; 99.4 4.6E-11 1.6E-15 148.6 25.7 227 9-297 162-423 (741)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 4.3E-10 1.5E-14 123.3 30.1 246 4-308 12-297 (314)
196 1qks_A Cytochrome CD1 nitrite 99.3 5.6E-09 1.9E-13 125.1 40.8 326 61-433 165-540 (567)
197 2mad_H Methylamine dehydrogena 99.3 5.6E-09 1.9E-13 118.7 36.2 255 16-299 27-337 (373)
198 2z2n_A Virginiamycin B lyase; 99.3 2.3E-08 7.8E-13 108.3 39.6 283 48-432 11-296 (299)
199 3dsm_A Uncharacterized protein 99.3 5.7E-10 1.9E-14 124.5 27.4 234 11-278 45-310 (328)
200 3sjl_D Methylamine dehydrogena 99.3 1.1E-09 3.7E-14 123.9 29.0 271 15-291 38-384 (386)
201 3hrp_A Uncharacterized protein 99.3 1.5E-09 5.1E-14 125.1 29.0 212 10-237 131-357 (409)
202 3dsm_A Uncharacterized protein 99.3 1.1E-09 3.9E-14 122.0 27.2 236 30-298 16-285 (328)
203 1xip_A Nucleoporin NUP159; bet 99.3 7.1E-11 2.4E-15 134.0 17.3 174 11-222 39-232 (388)
204 1rwi_B Serine/threonine-protei 99.3 1.5E-10 5.3E-15 124.1 19.2 199 10-236 67-266 (270)
205 3g4e_A Regucalcin; six bladed 99.2 7E-09 2.4E-13 113.7 32.6 235 7-299 10-260 (297)
206 1yr2_A Prolyl oligopeptidase; 99.2 1.4E-09 4.7E-14 135.3 28.9 282 18-389 115-442 (741)
207 2mad_H Methylamine dehydrogena 99.2 3E-08 1E-12 112.7 36.9 283 58-389 27-351 (373)
208 3dr2_A Exported gluconolactona 99.2 3.2E-09 1.1E-13 116.9 27.0 237 3-307 38-303 (305)
209 3c75_H MADH, methylamine dehyd 99.1 7E-09 2.4E-13 119.2 26.2 252 19-276 82-409 (426)
210 2ghs_A AGR_C_1268P; regucalcin 99.1 7.7E-08 2.6E-12 107.0 34.1 225 11-299 50-290 (326)
211 3sjl_D Methylamine dehydrogena 99.1 4.8E-08 1.6E-12 110.4 32.5 277 57-389 38-364 (386)
212 2qe8_A Uncharacterized protein 99.1 7.6E-09 2.6E-13 116.0 25.6 250 10-300 17-310 (343)
213 2qc5_A Streptogramin B lactona 99.1 3E-07 1E-11 99.4 37.3 226 50-306 18-256 (300)
214 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.7E-08 2.6E-12 108.8 32.9 247 21-278 53-346 (376)
215 3iuj_A Prolyl endopeptidase; h 99.1 4.6E-09 1.6E-13 129.5 24.1 235 7-271 126-407 (693)
216 3g4e_A Regucalcin; six bladed 99.0 1.9E-07 6.5E-12 102.1 31.5 243 50-372 11-262 (297)
217 4a2l_A BT_4663, two-component 99.0 5.7E-06 1.9E-10 103.5 48.8 399 12-426 175-655 (795)
218 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 2.9E-08 9.9E-13 108.6 24.1 197 8-234 69-299 (314)
219 1xip_A Nucleoporin NUP159; bet 99.0 6.9E-09 2.3E-13 117.7 18.5 134 7-152 86-230 (388)
220 1yiq_A Quinohemoprotein alcoho 98.9 1.4E-07 4.7E-12 116.0 28.6 275 21-298 121-536 (689)
221 1kb0_A Quinohemoprotein alcoho 98.9 1.8E-07 6.3E-12 114.6 27.1 273 20-296 127-535 (677)
222 3c75_H MADH, methylamine dehyd 98.9 4.9E-07 1.7E-11 103.8 28.6 251 103-390 82-404 (426)
223 3hrp_A Uncharacterized protein 98.9 1.8E-07 6.3E-12 107.5 24.5 202 15-232 176-408 (409)
224 1mda_H Methylamine dehydrogena 98.9 7.8E-08 2.7E-12 108.6 20.8 260 20-290 30-366 (368)
225 3iuj_A Prolyl endopeptidase; h 98.9 1E-07 3.5E-12 117.4 23.7 219 50-298 127-388 (693)
226 2hz6_A Endoplasmic reticulum t 98.9 5.4E-10 1.8E-14 126.9 2.3 187 20-241 8-199 (369)
227 1kb0_A Quinohemoprotein alcoho 98.9 6.4E-07 2.2E-11 109.8 29.8 214 21-242 77-354 (677)
228 1yiq_A Quinohemoprotein alcoho 98.8 7.4E-07 2.5E-11 109.5 30.3 212 21-240 70-344 (689)
229 3dr2_A Exported gluconolactona 98.8 7E-07 2.4E-11 98.0 27.1 179 43-235 36-225 (305)
230 2ece_A 462AA long hypothetical 98.8 1.1E-06 3.9E-11 99.9 29.0 202 19-234 93-352 (462)
231 2ghs_A AGR_C_1268P; regucalcin 98.8 8.4E-07 2.9E-11 98.5 27.5 183 9-223 89-291 (326)
232 4a2l_A BT_4663, two-component 98.8 2.3E-05 7.9E-10 97.9 43.4 348 12-369 133-560 (795)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.3E-05 8E-10 88.2 39.5 253 63-345 53-345 (376)
234 2hz6_A Endoplasmic reticulum t 98.8 2.2E-09 7.4E-14 122.0 5.2 184 62-278 8-201 (369)
235 3hxj_A Pyrrolo-quinoline quino 98.8 8.3E-08 2.8E-12 105.8 16.4 253 11-306 61-319 (330)
236 1npe_A Nidogen, entactin; glyc 98.8 7.6E-06 2.6E-10 87.7 31.5 246 21-293 1-263 (267)
237 2qe8_A Uncharacterized protein 98.7 5.1E-07 1.7E-11 101.0 21.2 199 7-230 64-317 (343)
238 3hxj_A Pyrrolo-quinoline quino 98.7 1.1E-07 3.8E-12 104.8 15.3 251 15-307 25-281 (330)
239 2ece_A 462AA long hypothetical 98.7 5.9E-06 2E-10 94.1 27.9 265 32-370 44-399 (462)
240 3v9f_A Two-component system se 98.7 0.00022 7.5E-09 88.8 45.2 328 10-369 211-600 (781)
241 3v9f_A Two-component system se 98.6 0.0012 4.1E-08 82.1 48.9 356 10-370 66-513 (781)
242 1mda_H Methylamine dehydrogena 98.6 8.3E-07 2.8E-11 100.2 17.5 210 3-245 60-357 (368)
243 1npe_A Nidogen, entactin; glyc 98.5 0.00011 3.7E-09 78.6 31.0 205 11-243 37-247 (267)
244 1fwx_A Nitrous oxide reductase 98.5 3.1E-06 1.1E-10 99.6 20.0 199 19-234 99-361 (595)
245 2iwa_A Glutamine cyclotransfer 98.5 3E-05 1E-09 83.0 25.6 206 11-234 22-237 (266)
246 1kv9_A Type II quinohemoprotei 98.5 2.9E-05 9.9E-10 94.9 28.9 275 21-299 117-520 (668)
247 3s94_A LRP-6, low-density lipo 98.4 0.011 3.8E-07 71.2 48.4 157 10-166 40-202 (619)
248 2fp8_A Strictosidine synthase; 98.4 0.00011 3.9E-09 80.8 28.3 205 10-244 19-278 (322)
249 1kv9_A Type II quinohemoprotei 98.4 4.7E-05 1.6E-09 93.1 27.5 215 21-242 66-341 (668)
250 2ad6_A Methanol dehydrogenase 98.4 0.00017 5.8E-09 86.4 31.1 273 21-297 115-523 (571)
251 3nol_A Glutamine cyclotransfer 98.3 3.4E-05 1.1E-09 81.8 21.1 200 3-223 35-244 (262)
252 1fwx_A Nitrous oxide reductase 98.3 1.3E-05 4.5E-10 94.3 19.8 209 23-235 17-309 (595)
253 1w6s_A Methanol dehydrogenase 98.3 0.00018 6.1E-09 86.4 28.8 279 15-297 111-533 (599)
254 2p4o_A Hypothetical protein; p 98.3 0.00036 1.2E-08 76.3 28.7 195 10-232 32-240 (306)
255 2iwa_A Glutamine cyclotransfer 98.3 0.00028 9.6E-09 75.4 26.6 172 41-242 9-189 (266)
256 3nol_A Glutamine cyclotransfer 98.3 0.00016 5.3E-09 76.7 24.0 206 43-301 33-245 (262)
257 1flg_A Protein (quinoprotein e 98.2 0.00046 1.6E-08 82.7 31.2 276 21-298 117-547 (582)
258 3qqz_A Putative uncharacterize 98.2 0.00032 1.1E-08 74.5 25.9 209 4-232 21-251 (255)
259 1k3i_A Galactose oxidase precu 98.2 1.8E-05 6.2E-10 96.6 18.2 271 14-300 190-530 (656)
260 1flg_A Protein (quinoprotein e 98.2 0.0012 4E-08 79.2 33.1 215 21-244 68-365 (582)
261 3ei3_A DNA damage-binding prot 98.2 0.051 1.7E-06 70.0 51.9 205 12-222 516-755 (1158)
262 3mbr_X Glutamine cyclotransfer 98.2 0.0002 7E-09 75.2 22.1 200 3-223 13-223 (243)
263 3v64_C Agrin; beta propeller, 98.2 0.0017 5.7E-08 72.6 31.3 198 9-235 33-235 (349)
264 3s94_A LRP-6, low-density lipo 98.1 0.015 5.3E-07 70.0 40.9 372 22-431 10-423 (619)
265 3nok_A Glutaminyl cyclase; bet 98.1 5.8E-05 2E-09 80.0 16.3 195 7-222 50-253 (268)
266 1ijq_A LDL receptor, low-densi 98.1 0.0048 1.6E-07 67.7 32.7 207 9-241 29-245 (316)
267 1w6s_A Methanol dehydrogenase 98.1 0.0017 5.9E-08 77.8 30.5 211 21-242 62-350 (599)
268 3v65_B Low-density lipoprotein 98.1 0.0026 8.9E-08 72.1 30.6 195 12-235 79-278 (386)
269 2ad6_A Methanol dehydrogenase 98.0 0.0025 8.4E-08 76.2 31.8 210 21-243 62-344 (571)
270 4a0p_A LRP6, LRP-6, low-densit 98.0 0.054 1.8E-06 65.3 45.4 332 21-387 6-370 (628)
271 3mbr_X Glutamine cyclotransfer 98.0 0.0013 4.4E-08 69.0 25.0 171 42-242 10-187 (243)
272 3nok_A Glutaminyl cyclase; bet 98.0 0.00019 6.3E-09 76.2 18.4 171 42-242 44-218 (268)
273 1ijq_A LDL receptor, low-densi 98.0 0.0092 3.2E-07 65.4 33.1 185 22-234 2-195 (316)
274 3p5b_L Low density lipoprotein 98.0 0.0085 2.9E-07 68.1 32.6 210 7-241 109-327 (400)
275 3v65_B Low-density lipoprotein 97.9 0.0054 1.8E-07 69.4 30.4 206 9-241 115-325 (386)
276 3v64_C Agrin; beta propeller, 97.9 0.0058 2E-07 68.2 30.0 205 10-241 73-282 (349)
277 3tc9_A Hypothetical hydrolase; 97.9 0.0023 7.9E-08 73.7 27.2 153 11-166 138-301 (430)
278 2xe4_A Oligopeptidase B; hydro 97.9 0.0003 1E-08 87.2 20.3 140 11-154 175-337 (751)
279 3p5b_L Low density lipoprotein 97.9 0.03 1E-06 63.6 34.9 237 22-286 84-337 (400)
280 2fp8_A Strictosidine synthase; 97.8 0.0027 9.1E-08 69.7 24.0 197 11-234 81-313 (322)
281 1xi4_A Clathrin heavy chain; a 97.8 0.0002 7E-09 90.8 16.1 167 474-645 1088-1273(1630)
282 3qqz_A Putative uncharacterize 97.8 0.011 3.6E-07 62.8 26.7 217 46-308 21-249 (255)
283 4hw6_A Hypothetical protein, I 97.7 0.0076 2.6E-07 69.4 27.3 211 10-232 139-372 (433)
284 3sov_A LRP-6, low-density lipo 97.7 0.0075 2.6E-07 66.3 25.7 227 22-276 5-245 (318)
285 2p4o_A Hypothetical protein; p 97.7 0.037 1.3E-06 60.0 30.4 123 41-166 22-147 (306)
286 4a0p_A LRP6, LRP-6, low-densit 97.6 0.22 7.7E-06 59.8 51.1 154 10-166 80-237 (628)
287 2xbg_A YCF48-like protein; pho 97.6 0.033 1.1E-06 61.3 29.5 258 9-303 35-314 (327)
288 3sov_A LRP-6, low-density lipo 97.6 0.03 1E-06 61.5 27.9 205 11-242 36-246 (318)
289 3m0c_C LDL receptor, low-densi 97.5 0.055 1.9E-06 66.8 32.7 209 8-241 422-639 (791)
290 2xe4_A Oligopeptidase B; hydro 97.5 0.0038 1.3E-07 77.3 22.3 110 53-165 175-303 (751)
291 1k3i_A Galactose oxidase precu 97.5 0.002 6.8E-08 78.5 18.6 111 56-166 190-323 (656)
292 1b89_A Protein (clathrin heavy 97.5 7.7E-05 2.6E-09 85.0 5.2 141 474-634 15-177 (449)
293 3tc9_A Hypothetical hydrolase; 97.4 0.014 4.9E-07 67.0 23.8 115 7-123 176-300 (430)
294 2p9w_A MAL S 1 allergenic prot 97.4 0.031 1.1E-06 61.0 24.3 158 7-165 10-214 (334)
295 3m0c_C LDL receptor, low-densi 97.3 0.12 4.1E-06 63.8 31.5 187 22-236 396-591 (791)
296 3amr_A 3-phytase; beta-propell 97.3 0.089 3E-06 58.0 26.6 197 20-242 39-272 (355)
297 4hw6_A Hypothetical protein, I 97.3 0.018 6.2E-07 66.2 22.3 209 8-233 180-432 (433)
298 3kya_A Putative phosphatase; s 97.2 0.16 5.3E-06 59.0 29.3 155 11-166 140-341 (496)
299 2p9w_A MAL S 1 allergenic prot 97.2 0.02 7E-07 62.5 20.3 160 54-234 15-215 (334)
300 2ism_A Putative oxidoreductase 97.2 0.17 5.7E-06 56.2 28.4 143 8-154 29-221 (352)
301 2xbg_A YCF48-like protein; pho 96.9 0.06 2.1E-06 59.1 21.7 191 9-231 121-319 (327)
302 2xzh_A Clathrin heavy chain 1; 96.9 0.66 2.3E-05 50.3 33.8 231 31-291 49-312 (365)
303 2xzh_A Clathrin heavy chain 1; 96.8 0.77 2.6E-05 49.8 31.4 209 14-245 71-301 (365)
304 3a9g_A Putative uncharacterize 96.8 0.4 1.4E-05 53.2 27.3 140 9-152 28-214 (354)
305 1n7d_A LDL receptor, low-densi 96.8 0.0019 6.5E-08 79.1 8.5 207 10-241 406-621 (699)
306 1n7d_A LDL receptor, low-densi 96.7 0.0025 8.6E-08 78.1 8.9 222 30-278 385-623 (699)
307 1xi4_A Clathrin heavy chain; a 96.7 0.93 3.2E-05 58.3 31.6 199 181-391 48-292 (1630)
308 1bpo_A Protein (clathrin); cla 96.7 1.2 4.2E-05 50.1 36.1 232 30-291 47-311 (494)
309 2g8s_A Glucose/sorbosone dehyd 96.6 0.69 2.4E-05 51.2 27.3 141 10-152 18-214 (353)
310 2vpj_A Kelch-like protein 12; 96.6 0.084 2.9E-06 56.8 18.9 193 20-237 14-234 (301)
311 1bpo_A Protein (clathrin); cla 96.5 1.5 5.1E-05 49.4 30.5 207 14-243 70-298 (494)
312 3kya_A Putative phosphatase; s 96.5 0.23 7.9E-06 57.6 23.2 218 11-237 187-478 (496)
313 3ii7_A Kelch-like protein 7; p 96.3 0.42 1.4E-05 51.3 22.6 104 22-127 13-130 (306)
314 2xn4_A Kelch-like protein 2; s 96.1 0.26 8.9E-06 52.9 19.4 104 21-127 16-136 (302)
315 3ei3_A DNA damage-binding prot 96.0 5.8 0.0002 51.0 45.8 386 19-432 471-914 (1158)
316 3gw4_A Uncharacterized protein 96.0 0.32 1.1E-05 47.9 18.4 175 472-658 2-194 (203)
317 2ism_A Putative oxidoreductase 96.0 2.6 8.8E-05 46.5 27.6 100 52-154 31-153 (352)
318 3sre_A PON1, serum paraoxonase 95.9 0.9 3.1E-05 50.3 22.9 193 12-231 52-295 (355)
319 3ii7_A Kelch-like protein 7; p 95.8 0.2 6.9E-06 53.9 16.9 107 20-127 55-181 (306)
320 2vpj_A Kelch-like protein 12; 95.6 0.19 6.4E-06 53.9 15.8 106 20-127 62-187 (301)
321 3amr_A 3-phytase; beta-propell 95.6 2.9 0.0001 45.9 24.9 192 62-277 39-272 (355)
322 3pbp_A Nucleoporin NUP82; beta 95.5 0.7 2.4E-05 52.0 19.7 144 17-163 28-209 (452)
323 3a9g_A Putative uncharacterize 95.4 4.1 0.00014 44.9 28.2 102 51-154 28-153 (354)
324 1b89_A Protein (clathrin heavy 95.3 0.08 2.7E-06 60.3 11.7 147 473-654 159-305 (449)
325 1zgk_A Kelch-like ECH-associat 95.2 0.4 1.4E-05 51.7 16.8 191 19-236 23-242 (308)
326 2xn4_A Kelch-like protein 2; s 95.2 0.33 1.1E-05 52.1 15.9 104 20-127 61-185 (302)
327 3ott_A Two-component system se 94.9 9.9 0.00034 46.3 45.3 268 10-309 146-447 (758)
328 4asc_A Kelch repeat and BTB do 94.8 1.4 4.8E-05 47.4 19.8 99 24-126 8-128 (315)
329 4asc_A Kelch repeat and BTB do 94.5 0.88 3E-05 49.1 17.4 112 13-126 38-176 (315)
330 3das_A Putative oxidoreductase 94.3 7.8 0.00027 42.6 32.1 147 5-152 27-218 (347)
331 3pbp_A Nucleoporin NUP82; beta 94.0 3.6 0.00012 46.3 20.7 153 60-230 29-208 (452)
332 1tl2_A L10, protein (tachylect 93.9 0.32 1.1E-05 49.8 11.1 140 10-158 41-202 (236)
333 1cru_A Protein (soluble quinop 93.9 2.9 9.9E-05 47.9 20.8 106 8-113 25-163 (454)
334 3vtx_A MAMA; tetratricopeptide 93.9 0.43 1.5E-05 46.5 12.1 142 473-631 16-167 (184)
335 2woz_A Kelch repeat and BTB do 93.9 2.5 8.5E-05 45.5 19.3 109 16-127 52-187 (318)
336 3mkq_B Coatomer subunit alpha; 93.7 0.31 1.1E-05 48.1 10.2 92 470-649 42-146 (177)
337 1zgk_A Kelch-like ECH-associat 93.6 1.3 4.4E-05 47.6 16.3 63 62-126 24-101 (308)
338 2woz_A Kelch repeat and BTB do 93.5 4.5 0.00015 43.4 20.4 101 23-127 18-139 (318)
339 2be1_A Serine/threonine-protei 93.4 0.66 2.3E-05 51.0 13.5 112 22-133 11-139 (339)
340 3sre_A PON1, serum paraoxonase 93.2 8.7 0.0003 42.3 22.3 166 53-233 51-251 (355)
341 3ott_A Two-component system se 92.9 22 0.00075 43.2 48.2 261 9-306 21-303 (758)
342 4gyw_A UDP-N-acetylglucosamine 92.8 0.68 2.3E-05 56.6 13.7 141 473-630 20-170 (723)
343 2ho1_A Type 4 fimbrial biogene 92.5 2.8 9.6E-05 42.6 16.3 170 473-657 48-235 (252)
344 2g8s_A Glucose/sorbosone dehyd 92.0 17 0.00058 39.8 27.5 103 52-155 18-149 (353)
345 2uvk_A YJHT; unknown function, 91.7 2.3 7.8E-05 46.5 15.2 93 20-114 19-128 (357)
346 1cru_A Protein (soluble quinop 91.4 7.5 0.00026 44.4 19.6 105 52-156 27-164 (454)
347 3sbq_A Nitrous-oxide reductase 91.4 17 0.00058 42.3 21.7 273 23-299 72-453 (638)
348 2vq2_A PILW, putative fimbrial 91.3 4 0.00014 40.1 15.5 145 472-631 18-173 (225)
349 3u4t_A TPR repeat-containing p 91.3 3.7 0.00013 42.2 15.7 48 473-520 85-137 (272)
350 2pl2_A Hypothetical conserved 91.1 5.1 0.00018 40.2 16.1 46 473-518 16-66 (217)
351 3das_A Putative oxidoreductase 90.9 8.5 0.00029 42.3 18.6 111 46-156 26-160 (347)
352 3nf1_A KLC 1, kinesin light ch 90.8 3.5 0.00012 43.1 15.2 155 472-631 37-221 (311)
353 2ho1_A Type 4 fimbrial biogene 90.7 4.6 0.00016 40.9 15.5 145 472-631 81-235 (252)
354 3ulq_A Response regulator aspa 90.7 2.9 0.0001 46.0 15.0 163 473-647 114-300 (383)
355 4a1s_A PINS, partner of inscut 90.6 4.9 0.00017 44.2 16.8 154 473-631 97-289 (411)
356 2pl2_A Hypothetical conserved 90.4 0.6 2E-05 47.4 8.1 143 473-633 50-213 (217)
357 4abn_A Tetratricopeptide repea 90.3 2.7 9.4E-05 48.3 14.7 141 473-631 113-284 (474)
358 4a1s_A PINS, partner of inscut 90.2 5.2 0.00018 44.0 16.6 159 478-647 199-379 (411)
359 3gyz_A Chaperone protein IPGC; 90.2 0.45 1.5E-05 45.7 6.6 45 473-517 47-96 (151)
360 3uq3_A Heat shock protein STI1 90.1 2.1 7.3E-05 43.3 12.3 49 472-520 48-108 (258)
361 1tl2_A L10, protein (tachylect 90.0 3.1 0.00011 42.6 12.7 102 52-160 41-157 (236)
362 2q7f_A YRRB protein; TPR, prot 89.8 4.5 0.00015 40.5 14.4 46 473-518 68-118 (243)
363 2xpi_A Anaphase-promoting comp 89.7 5.5 0.00019 46.4 17.1 106 546-657 417-542 (597)
364 3ieg_A DNAJ homolog subfamily 89.7 5.9 0.0002 42.1 16.1 153 473-631 48-214 (359)
365 3ro2_A PINS homolog, G-protein 89.5 7.1 0.00024 40.8 16.3 79 478-561 159-248 (338)
366 3sf4_A G-protein-signaling mod 89.4 12 0.00041 40.6 18.6 159 478-647 163-343 (406)
367 3edt_B KLC 2, kinesin light ch 89.2 6.6 0.00022 40.0 15.4 117 473-594 54-187 (283)
368 3edt_B KLC 2, kinesin light ch 89.2 7.7 0.00026 39.5 15.9 150 476-630 22-194 (283)
369 3vtx_A MAMA; tetratricopeptide 89.0 6.6 0.00023 37.6 14.4 127 488-631 2-133 (184)
370 2be1_A Serine/threonine-protei 88.8 1 3.6E-05 49.4 9.0 117 106-244 11-140 (339)
371 2uvk_A YJHT; unknown function, 88.8 5.8 0.0002 43.2 15.3 102 20-122 65-224 (357)
372 3sf4_A G-protein-signaling mod 88.7 8.7 0.0003 41.8 16.8 154 473-631 58-253 (406)
373 3cv0_A Peroxisome targeting si 88.7 7.5 0.00026 40.8 15.8 47 472-518 31-82 (327)
374 2fo7_A Synthetic consensus TPR 88.5 4 0.00014 36.0 11.6 46 473-518 12-62 (136)
375 1a17_A Serine/threonine protei 88.5 2.2 7.6E-05 39.9 10.3 47 473-519 24-75 (166)
376 2jso_A Polymyxin resistance pr 88.5 0.18 6.1E-06 41.9 1.9 62 849-923 10-73 (88)
377 3ro2_A PINS homolog, G-protein 88.5 8.1 0.00028 40.3 15.9 46 473-518 54-110 (338)
378 4eqf_A PEX5-related protein; a 88.4 6.9 0.00024 42.3 15.6 47 472-518 75-126 (365)
379 1fch_A Peroxisomal targeting s 88.3 9.6 0.00033 40.9 16.6 47 472-518 74-125 (368)
380 3as5_A MAMA; tetratricopeptide 88.2 13 0.00044 34.8 15.8 46 473-518 19-69 (186)
381 3ro3_A PINS homolog, G-protein 88.0 11 0.00037 34.3 14.7 26 493-518 11-36 (164)
382 2zwa_A Leucine carboxyl methyl 87.7 9.5 0.00032 46.2 17.5 109 19-127 396-525 (695)
383 1w3b_A UDP-N-acetylglucosamine 87.7 4.5 0.00015 44.3 13.7 45 473-517 10-59 (388)
384 2qfc_A PLCR protein; TPR, HTH, 87.7 13 0.00046 38.9 16.9 41 611-657 242-283 (293)
385 2rqx_A PMRD, polymyxin B resis 87.5 0.32 1.1E-05 40.4 2.8 63 849-923 10-72 (89)
386 3hym_B Cell division cycle pro 87.5 7.4 0.00025 40.8 14.8 46 473-518 67-118 (330)
387 3s25_A Hypothetical 7-bladed b 87.4 33 0.0011 36.6 25.3 135 17-166 21-176 (302)
388 2vsy_A XCC0866; transferase, g 87.4 5.6 0.00019 46.6 14.9 139 476-631 3-154 (568)
389 2xcb_A PCRH, regulatory protei 87.1 1.1 3.8E-05 41.7 7.0 45 473-517 29-78 (142)
390 3s25_A Hypothetical 7-bladed b 87.0 35 0.0012 36.4 25.8 138 15-166 58-216 (302)
391 2vgx_A Chaperone SYCD; alterna 87.0 1.1 3.9E-05 42.3 7.0 21 611-631 95-115 (148)
392 2y4t_A DNAJ homolog subfamily 86.8 6.9 0.00023 43.6 14.7 45 473-517 154-203 (450)
393 3mkr_A Coatomer subunit epsilo 86.8 4 0.00014 43.4 12.0 44 473-516 76-126 (291)
394 3cv0_A Peroxisome targeting si 86.7 17 0.00059 37.9 17.2 47 472-518 65-116 (327)
395 2q7f_A YRRB protein; TPR, prot 86.7 5 0.00017 40.1 12.3 143 472-631 33-185 (243)
396 2pzi_A Probable serine/threoni 86.6 2.6 8.8E-05 51.1 11.5 150 466-632 395-561 (681)
397 1hh8_A P67PHOX, NCF-2, neutrop 86.6 5.7 0.0002 39.0 12.5 78 473-561 17-96 (213)
398 4gyw_A UDP-N-acetylglucosamine 86.5 2.7 9.3E-05 51.2 11.6 124 491-631 9-137 (723)
399 2vq2_A PILW, putative fimbrial 86.3 14 0.00047 36.1 15.2 108 472-594 52-165 (225)
400 2xpi_A Anaphase-promoting comp 86.0 9.1 0.00031 44.5 15.8 179 473-657 350-576 (597)
401 3ieg_A DNAJ homolog subfamily 86.0 6.5 0.00022 41.8 13.4 143 472-631 81-260 (359)
402 1ouv_A Conserved hypothetical 85.9 27 0.00093 35.7 17.9 44 474-517 18-68 (273)
403 3hym_B Cell division cycle pro 85.8 13 0.00045 38.9 15.6 46 473-518 101-152 (330)
404 2y4t_A DNAJ homolog subfamily 85.7 18 0.0006 40.1 17.4 47 473-519 71-122 (450)
405 4eqf_A PEX5-related protein; a 85.5 5.8 0.0002 42.9 12.8 47 473-519 110-161 (365)
406 3ulq_A Response regulator aspa 85.5 23 0.00077 38.6 17.9 159 473-636 154-337 (383)
407 3qou_A Protein YBBN; thioredox 85.0 5 0.00017 42.4 11.7 48 472-519 127-179 (287)
408 3u4t_A TPR repeat-containing p 84.8 3.7 0.00013 42.1 10.3 46 473-518 14-64 (272)
409 2ifu_A Gamma-SNAP; membrane fu 84.8 5.5 0.00019 42.5 12.0 35 476-519 30-64 (307)
410 3lvg_A Clathrin heavy chain 1; 84.6 0.062 2.1E-06 60.9 -3.8 139 473-652 181-325 (624)
411 3qky_A Outer membrane assembly 84.6 6.8 0.00023 40.2 12.3 46 473-518 26-79 (261)
412 3nf1_A KLC 1, kinesin light ch 84.4 15 0.00052 37.9 15.2 136 491-631 27-179 (311)
413 2e2e_A Formate-dependent nitri 84.4 3.6 0.00012 39.4 9.4 46 473-518 21-71 (177)
414 3mv2_B Coatomer subunit epsilo 84.2 2 6.9E-05 46.4 8.0 48 473-520 111-165 (310)
415 1fch_A Peroxisomal targeting s 84.0 12 0.00043 40.0 14.7 47 472-518 108-159 (368)
416 3ma5_A Tetratricopeptide repea 83.9 3.3 0.00011 35.8 8.1 30 489-518 5-34 (100)
417 4gcn_A Protein STI-1; structur 83.9 2 6.7E-05 39.4 6.8 27 492-518 9-35 (127)
418 3urz_A Uncharacterized protein 83.7 8.4 0.00029 38.2 12.2 79 472-561 14-113 (208)
419 1xnf_A Lipoprotein NLPI; TPR, 83.7 5.3 0.00018 40.9 10.9 46 473-518 16-70 (275)
420 4gco_A Protein STI-1; structur 83.6 7.7 0.00026 35.2 10.8 27 492-518 14-40 (126)
421 1qqe_A Vesicular transport pro 83.6 24 0.00082 37.0 16.4 83 473-561 48-143 (292)
422 4i17_A Hypothetical protein; T 83.4 14 0.00049 36.6 13.9 120 473-631 18-143 (228)
423 3uq3_A Heat shock protein STI1 83.3 4.8 0.00017 40.5 10.3 46 473-518 16-65 (258)
424 1w3b_A UDP-N-acetylglucosamine 83.1 9.1 0.00031 41.8 13.2 47 472-518 43-94 (388)
425 2c2l_A CHIP, carboxy terminus 82.6 4.2 0.00014 42.9 9.8 78 473-561 15-97 (281)
426 3q15_A PSP28, response regulat 82.4 20 0.0007 39.0 15.7 151 473-630 193-361 (378)
427 2ifu_A Gamma-SNAP; membrane fu 82.2 14 0.00047 39.3 13.8 82 473-561 47-140 (307)
428 3mkr_A Coatomer subunit epsilo 82.1 15 0.00053 38.7 14.1 48 472-519 111-158 (291)
429 2r5s_A Uncharacterized protein 81.6 12 0.0004 35.8 11.9 49 472-520 16-69 (176)
430 4i17_A Hypothetical protein; T 81.4 7.8 0.00027 38.7 10.9 83 473-563 53-144 (228)
431 1elw_A TPR1-domain of HOP; HOP 80.2 14 0.00046 31.6 10.9 28 491-518 4-31 (118)
432 3q15_A PSP28, response regulat 80.0 23 0.00078 38.6 15.1 152 473-630 112-286 (378)
433 3q49_B STIP1 homology and U bo 79.8 14 0.00049 33.0 11.3 28 490-517 8-35 (137)
434 3b7f_A Glycosyl hydrolase, BNR 78.9 41 0.0014 37.0 16.8 151 9-163 54-259 (394)
435 3gw4_A Uncharacterized protein 78.8 35 0.0012 32.6 14.6 84 473-561 37-132 (203)
436 1xnf_A Lipoprotein NLPI; TPR, 78.2 16 0.00056 37.0 12.4 47 473-519 54-105 (275)
437 3upv_A Heat shock protein STI1 78.1 16 0.00054 32.4 10.8 28 491-518 4-31 (126)
438 2yhc_A BAMD, UPF0169 lipoprote 78.1 20 0.00068 35.8 12.8 46 472-517 14-67 (225)
439 1hxi_A PEX5, peroxisome target 78.0 8.9 0.0003 34.4 9.0 80 471-561 26-110 (121)
440 1qqe_A Vesicular transport pro 77.6 25 0.00086 36.8 14.0 34 477-519 32-65 (292)
441 2dba_A Smooth muscle cell asso 77.6 18 0.00062 32.5 11.4 31 490-520 27-57 (148)
442 3u3w_A Transcriptional activat 76.8 19 0.00064 37.7 12.6 170 470-651 83-277 (293)
443 1ouv_A Conserved hypothetical 76.8 49 0.0017 33.7 15.7 45 475-519 55-106 (273)
444 2hr2_A Hypothetical protein; a 76.7 18 0.00061 34.8 11.0 30 490-519 10-39 (159)
445 2lni_A Stress-induced-phosphop 76.6 13 0.00043 32.8 9.7 29 491-519 16-44 (133)
446 3sz7_A HSC70 cochaperone (SGT) 76.2 16 0.00055 34.2 10.8 29 491-519 11-39 (164)
447 2zwa_A Leucine carboxyl methyl 76.0 22 0.00074 43.0 14.2 107 20-126 451-579 (695)
448 3fp2_A TPR repeat-containing p 75.3 33 0.0011 38.8 15.2 46 473-518 287-337 (537)
449 4ga2_A E3 SUMO-protein ligase 75.3 5.8 0.0002 37.3 7.2 46 473-518 42-92 (150)
450 2kck_A TPR repeat; tetratricop 75.2 9.6 0.00033 32.3 8.2 45 473-517 17-66 (112)
451 1wao_1 Serine/threonine protei 75.0 4.1 0.00014 46.9 7.2 80 471-561 15-99 (477)
452 2gw1_A Mitochondrial precursor 74.8 9.3 0.00032 43.2 10.2 21 611-631 455-475 (514)
453 3uc1_A DNA gyrase subunit A; D 74.7 98 0.0033 33.4 19.8 155 10-166 95-279 (327)
454 4ga2_A E3 SUMO-protein ligase 74.5 10 0.00035 35.4 8.8 46 473-518 8-58 (150)
455 1elr_A TPR2A-domain of HOP; HO 73.5 30 0.001 30.0 11.3 29 491-519 4-32 (131)
456 3ro3_A PINS homolog, G-protein 73.0 35 0.0012 30.6 12.1 82 473-560 20-113 (164)
457 3n71_A Histone lysine methyltr 72.9 23 0.00079 40.7 12.8 85 472-561 319-418 (490)
458 3qhy_B Beta-lactamase inhibito 71.8 22 0.00074 37.6 11.4 144 11-166 25-168 (282)
459 3sbq_A Nitrous-oxide reductase 70.4 20 0.00067 41.8 10.9 100 54-155 325-454 (638)
460 3b7f_A Glycosyl hydrolase, BNR 70.2 1.2E+02 0.0042 33.0 17.9 138 21-162 22-204 (394)
461 2h6f_A Protein farnesyltransfe 69.1 7 0.00024 43.5 7.1 46 473-518 108-159 (382)
462 2vyi_A SGTA protein; chaperone 69.0 38 0.0013 29.2 11.0 28 491-518 12-39 (131)
463 3k9i_A BH0479 protein; putativ 69.0 3.2 0.00011 37.0 3.5 78 474-631 2-87 (117)
464 3ma5_A Tetratricopeptide repea 68.3 7.1 0.00024 33.7 5.5 46 473-518 18-68 (100)
465 3qou_A Protein YBBN; thioredox 68.0 55 0.0019 34.1 13.7 125 490-631 116-245 (287)
466 3upv_A Heat shock protein STI1 67.8 18 0.00061 32.0 8.4 48 472-519 14-66 (126)
467 4abn_A Tetratricopeptide repea 67.7 27 0.00093 39.7 11.9 142 473-631 148-318 (474)
468 1a17_A Serine/threonine protei 67.3 35 0.0012 31.2 10.8 30 490-519 12-41 (166)
469 4gco_A Protein STI-1; structur 67.3 18 0.00063 32.6 8.5 79 472-561 23-106 (126)
470 1na0_A Designed protein CTPR3; 67.1 45 0.0015 28.3 11.0 28 491-518 9-36 (125)
471 3rkv_A Putative peptidylprolyl 66.7 7 0.00024 36.8 5.6 29 490-518 10-38 (162)
472 4ady_A RPN2, 26S proteasome re 66.2 14 0.00047 45.9 9.2 50 593-642 216-270 (963)
473 2fbn_A 70 kDa peptidylprolyl i 66.1 9.1 0.00031 37.4 6.6 47 472-518 48-115 (198)
474 2gw1_A Mitochondrial precursor 66.0 62 0.0021 36.1 14.6 46 473-518 17-66 (514)
475 3sz7_A HSC70 cochaperone (SGT) 65.3 19 0.00064 33.8 8.4 48 472-519 21-73 (164)
476 2kck_A TPR repeat; tetratricop 65.2 17 0.00058 30.6 7.5 45 473-517 51-103 (112)
477 1na3_A Designed protein CTPR2; 64.7 10 0.00035 31.1 5.7 46 473-518 20-70 (91)
478 3qww_A SET and MYND domain-con 64.5 23 0.00078 40.1 10.2 88 469-561 305-407 (433)
479 2pm7_A Protein WEB1, protein t 64.4 4.4 0.00015 45.4 4.1 41 609-649 147-187 (399)
480 2ond_A Cleavage stimulation fa 64.3 41 0.0014 35.4 11.8 42 479-520 81-128 (308)
481 3q49_B STIP1 homology and U bo 64.2 22 0.00076 31.6 8.4 48 472-519 19-71 (137)
482 1elw_A TPR1-domain of HOP; HOP 64.2 24 0.00081 29.9 8.3 78 473-561 15-97 (118)
483 3qky_A Outer membrane assembly 64.0 71 0.0024 32.2 13.3 31 489-519 13-43 (261)
484 4gcn_A Protein STI-1; structur 63.6 11 0.00037 34.1 6.1 46 473-518 19-69 (127)
485 1na0_A Designed protein CTPR3; 63.6 22 0.00076 30.4 8.1 47 472-518 19-70 (125)
486 3no0_A DNA gyrase subunit A; D 63.5 1.5E+02 0.005 31.0 19.8 203 8-234 22-246 (276)
487 2kc7_A BFR218_protein; tetratr 63.2 9.1 0.00031 32.3 5.2 47 472-518 10-62 (99)
488 1hz4_A MALT regulatory protein 63.2 1.3E+02 0.0045 32.0 16.0 155 471-631 23-200 (373)
489 2xev_A YBGF; tetratricopeptide 62.9 21 0.00073 31.3 8.0 46 473-518 13-66 (129)
490 3d8d_A Amyloid beta A4 precurs 62.3 4.4 0.00015 38.3 3.0 48 807-856 54-106 (148)
491 2l6j_A TPR repeat-containing p 61.8 12 0.00041 31.9 5.8 48 473-520 15-67 (111)
492 3as5_A MAMA; tetratricopeptide 61.6 98 0.0033 28.3 14.4 124 491-631 8-136 (186)
493 4g26_A Pentatricopeptide repea 61.5 26 0.00088 40.5 10.1 48 473-520 81-134 (501)
494 1hxi_A PEX5, peroxisome target 61.2 33 0.0011 30.5 8.9 26 493-518 19-44 (121)
495 4f3v_A ESX-1 secretion system 61.0 35 0.0012 36.1 10.1 117 473-631 113-234 (282)
496 2fo7_A Synthetic consensus TPR 60.7 66 0.0022 27.5 10.9 27 492-518 2-28 (136)
497 2if4_A ATFKBP42; FKBP-like, al 60.7 8 0.00027 42.1 5.3 29 491-519 179-207 (338)
498 2wg3_C Hedgehog-interacting pr 60.0 1E+02 0.0035 35.0 14.6 118 40-157 2-160 (463)
499 2l6j_A TPR repeat-containing p 59.9 9.2 0.00031 32.7 4.7 29 490-518 3-31 (111)
500 1ihg_A Cyclophilin 40; ppiase 59.7 36 0.0012 37.4 10.6 38 476-519 214-251 (370)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-57 Score=573.36 Aligned_cols=549 Identities=23% Similarity=0.454 Sum_probs=440.0
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
.++|++|+++|++++|||++++|++|+.+|.|++||+.+++.+..+..|.++|++++|+|++++|++|+.||.|++||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCC-eeEEEEecCCCCeEEEEEec-CCCEEEEEECCCeE
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTI 159 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~-~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~Dg~I 159 (992)
+++.+..+.+|.+.|++++|+|++++|++|+.||.|++||++++ .....+.+|..+|++++|+| +++.+++++.||+|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999986 77888899999999999999 78999999999999
Q ss_pred EEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee
Q psy2685 160 RVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP--KSEVIVSNAEDKSIRLWDMTKRTC 237 (992)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~vwdl~~~~~ 237 (992)
++||+.+... .......|...+.+++|+| ++.++++++.||.|++||+.+++.
T Consensus 166 ~vwd~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 166 KVWSLGQSTP-------------------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp EEEETTCSSC-------------------------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred EEEECCCCcc-------------------------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 9999875431 1222234558899999999 999999999999999999999999
Q ss_pred eeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCC--EEEEEECCCEEEEEe
Q psy2685 238 LNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLN--LFAAGHDAGMVVFKF 308 (992)
Q Consensus 238 l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~--~Lasgsddgiivw~l 308 (992)
+..+..+...+. +..+++++.||.|++||+.+++.+..+..+...+++++|+|++. ++++|+++++.+|++
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 999887766543 37899999999999999999999999999999999999999987 799999999999987
Q ss_pred cCCcceEEee---------------------------------------------------------ccEEEEEeCCeEE
Q psy2685 309 ERERPAYTVH---------------------------------------------------------NNVMYYVKERFLH 331 (992)
Q Consensus 309 ~~~~~~~~~~---------------------------------------------------------~~~v~~~~~~~i~ 331 (992)
....+..... +..+....++.+.
T Consensus 301 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~ 380 (814)
T 3mkq_A 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYV 380 (814)
T ss_dssp SCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEE
T ss_pred CCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEE
Confidence 6654443332 2233444455566
Q ss_pred EEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCcc-----------c----c---
Q psy2685 332 RLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-----------E----R--- 393 (992)
Q Consensus 332 i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~-----------~----~--- 393 (992)
+|++..... .+...+.+++|+|+|+.+++++.+ |.+++|....... + .
T Consensus 381 i~~~~~~~~--------~~~~~i~~~~~spdg~~la~~~~~------g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~ 446 (814)
T 3mkq_A 381 IYTALAWRN--------KAFGKCQDFVWGPDSNSYALIDET------GQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLG 446 (814)
T ss_dssp EEETTTTEE--------EEEEECSEEEECTTSSCEEEECTT------CCEEEEETTEECTTCCCCCSSCCCEEECSSSEE
T ss_pred EEECccccc--------cCCCceEEEEEeCCCCeEEEEeCC------CcEEEEECCCCccceEEcCCcCccceecceEEE
Confidence 666432111 112345667777777776666543 5566664211100 0 0
Q ss_pred --------------ceeccCccccceEEEEecCCeEEEEE------c-CCeEEEEEcC----------------------
Q psy2685 394 --------------KEVADGKRSTGISAVWVARNRFAVLD------R-NHTILIKNLK---------------------- 430 (992)
Q Consensus 394 --------------~~~~~~~~~~~~s~~w~~~~~~av~~------~-~g~I~i~dl~---------------------- 430 (992)
.............+.|++++++++.. . ++.+.+|.-.
T Consensus 447 ~~~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (814)
T 3mkq_A 447 VKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAF 526 (814)
T ss_dssp EEETTEEEEECTTTCCEEEEESSCEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTE
T ss_pred EecCCEEEEEECCcCcEEEEEecCCCEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhhe
Confidence 00000001111256788777665555 3 2333332100
Q ss_pred -------Ccc---cccc-------c-------------------------------------------------------
Q psy2685 431 -------NEY---LWRM-------G------------------------------------------------------- 438 (992)
Q Consensus 431 -------~~~---~W~~-------~------------------------------------------------------- 438 (992)
... .|+. .
T Consensus 527 ~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 606 (814)
T 3mkq_A 527 DVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEF 606 (814)
T ss_dssp EEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHH
T ss_pred eeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcHHHHH
Confidence 000 0210 0
Q ss_pred -----cchhhc----cc---c----------ccccCCccceeccccccccceeeceeccCCHHHHHHHHHhcCChHHHHH
Q psy2685 439 -----NDRQES----AL---C----------GWPGTGYPEVALHFVKDDRTRLTLALECGNIDIALEAARVLEDKSVWER 496 (992)
Q Consensus 439 -----~~~l~~----ll---~----------gL~~~g~~~~al~~~~d~~~~F~~aL~~g~ldeA~~~a~~i~~~~~W~~ 496 (992)
+.+++. ++ . +++++++++.++++++++..+|++++++|+|++|+++++.++++++|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~ 686 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRA 686 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHH
Confidence 000000 11 0 1345566677788888899999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhh
Q psy2685 497 LGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFF 576 (992)
Q Consensus 497 LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~ 576 (992)
||++|++++++++|++||++++|++++.+||.+.++.+++.++++++
T Consensus 687 la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a--------------------------------- 733 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA--------------------------------- 733 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHHHHHHHcCCcHHHHHHHHhcCChH
Q psy2685 577 FAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSE 648 (992)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~~ 648 (992)
+.++++..++++++++|++++|+++|.++++|++|+.+|++|++++
T Consensus 734 --------------------------~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 734 --------------------------ETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp --------------------------HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred --------------------------HHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 7788888899999999999999999999999999999999999888
No 2
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-49 Score=499.49 Aligned_cols=554 Identities=20% Similarity=0.334 Sum_probs=414.1
Q ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEEC
Q psy2685 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW 122 (992)
Q Consensus 43 ~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl 122 (992)
....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++++|++|+.||.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc
Q psy2685 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH 202 (992)
Q Consensus 123 ~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h 202 (992)
.+++.+..+.+|...|++++|+|+++++++++.||+|++||+.+.. .....+.+|
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------------------------~~~~~~~~~ 139 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------------------ALEQTFEGH 139 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-------------------------EEEEEEECC
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-------------------------eEEEEEcCC
Confidence 9999999999999999999999999999999999999999986532 255677889
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEeeccC-ccc---------ccCEEEEEeCCCeEEEEECCCCe
Q psy2685 203 YNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ-ERF---------WSEVIVSNAEDKSIRLWDMTKRT 271 (992)
Q Consensus 203 ~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~-~~~---------~s~~l~sgs~Dg~I~vwd~~t~~ 271 (992)
.+.|.+++|+| ++..+++++.||+|++||+.++.....+..+. ..+ .+..+++++.||.|++||+.+++
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 99999999999 88999999999999999999887776666543 221 24789999999999999999999
Q ss_pred EEEEeecCCCCEEEEEEeCCCCEEEEEECCC-EEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCC
Q psy2685 272 CLNTFRREQERFWVLVAHPTLNLFAAGHDAG-MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGG 350 (992)
Q Consensus 272 ~v~~l~~h~~~V~~la~spdg~~Lasgsddg-iivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~ 350 (992)
.+.++.+|...|.+++|+|+++++++|+.+| +.+|++.+.+... .+ ..+
T Consensus 220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-----------------------------~~-~~~ 269 (814)
T 3mkq_A 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK-----------------------------TL-NVG 269 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE-----------------------------EE-CCS
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------Ee-ecC
Confidence 9999999999999999999999999998765 4455544332221 11 123
Q ss_pred CccceeEEEccCCC--EEEEEecCCccccCCeEEEEEeCCCcc-------------------------------------
Q psy2685 351 RIPAHSISYNATEH--SILVTTRNANNFENSTYDLYMIPKEES------------------------------------- 391 (992)
Q Consensus 351 ~~~I~~lafspdg~--~lav~~~~~~~~~~g~i~i~~l~~~~~------------------------------------- 391 (992)
...+++++|+|+|. ++++++. +.+.+|.+.....
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFD-------NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEET-------TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred CCcEEEEEEccCCCceEEEEEeC-------CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 44556666666665 3333332 2334443322110
Q ss_pred ----ccceeccCccccceEEEEecCCeEEEEEcCCeEEEEEcCCccccccccchhhccccccccCCccceeccccccccc
Q psy2685 392 ----ERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEYLWRMGNDRQESALCGWPGTGYPEVALHFVKDDRT 467 (992)
Q Consensus 392 ----~~~~~~~~~~~~~~s~~w~~~~~~av~~~~g~I~i~dl~~~~~W~~~~~~l~~ll~gL~~~g~~~~al~~~~d~~~ 467 (992)
............+..+.|++++++++...++.+.+|++..... . .
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~-------------------------~------~ 391 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRN-------------------------K------A 391 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEE-------------------------E------E
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccc-------------------------c------C
Confidence 0000111223345677888888888777788888886532100 0 0
Q ss_pred eeeceeccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 468 RLTLALECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 468 ~F~~aL~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
. . .+
T Consensus 392 ~-~---------------------------------------------------~i------------------------ 395 (814)
T 3mkq_A 392 F-G---------------------------------------------------KC------------------------ 395 (814)
T ss_dssp E-E---------------------------------------------------EC------------------------
T ss_pred C-C---------------------------------------------------ce------------------------
Confidence 0 0 00
Q ss_pred hhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHHHH
Q psy2685 548 DISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKI 627 (992)
Q Consensus 548 ~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~i 627 (992)
T Consensus 396 -------------------------------------------------------------------------------- 395 (814)
T 3mkq_A 396 -------------------------------------------------------------------------------- 395 (814)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcHHHHHHHHhcCChHHHHHHHhhcCCCCCCCCCCCCCCCccccCCCccccccCCCCCcccccchhhhhHHHhhh
Q psy2685 628 LKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVTKKMSSVGCEEIF 707 (992)
Q Consensus 628 ~~~~~~~~~A~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (992)
......|
T Consensus 396 --------------------------------------------~~~~~sp----------------------------- 402 (814)
T 3mkq_A 396 --------------------------------------------QDFVWGP----------------------------- 402 (814)
T ss_dssp --------------------------------------------SEEEECT-----------------------------
T ss_pred --------------------------------------------EEEEEeC-----------------------------
Confidence 0000000
Q ss_pred hcCcceeeeeccCceeeehHHHHHHHhHhhhheeeeeeeeccccccceeeeeccccccccccccceehhhHHHHHHHhHh
Q psy2685 708 YAGTGALLCREADHVILFDVQQKRALAQVKVAKCRHVVTKKMSSVGCEEIFYAGTGALLCREADHVILFDVQQKRALAQV 787 (992)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (992)
.++.++.......|.+++.- .....++.
T Consensus 403 -dg~~la~~~~~g~v~l~~~~--------------~~~~~~v~------------------------------------- 430 (814)
T 3mkq_A 403 -DSNSYALIDETGQIKYYKNF--------------KEVTSWSV------------------------------------- 430 (814)
T ss_dssp -TSSCEEEECTTCCEEEEETT--------------EECTTCCC-------------------------------------
T ss_pred -CCCeEEEEeCCCcEEEEECC--------------CCccceEE-------------------------------------
Confidence 12223333333444444210 00000000
Q ss_pred hhheeccccccccceeEeeccceeEe-eecCeeEEEeehhhhhhceeeeceeEEEEECCCcceeeecccceEE------E
Q psy2685 788 KVAKCRHVLYNKGEEIFYAGTGALLC-READHVILFDVQQKRALAQVKVAKCRHVVWSPDMTHLALLSKHTLH------I 860 (992)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 860 (992)
.+.. ..+.+| .+.|+. ..+..|.+||+++.+.+.++.... ++|.|||||+++|..++|.|. +
T Consensus 431 ---~~~~----s~dg~~---~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~v~~s~dg~~la~~~~~~~~~~~~~~~ 499 (814)
T 3mkq_A 431 ---PMHS----AIDRLF---SGALLGVKSDGFVYFFDWDNGTLVRRIDVNA-KDVIWSDNGELVMIVNTNSNGDEASGYT 499 (814)
T ss_dssp ---CCSS----CCCEEE---CSSSEEEEETTEEEEECTTTCCEEEEESSCE-EEEEECTTSSEEEEEECCCSSCSCSEEE
T ss_pred ---cCCc----Ccccee---cceEEEEecCCEEEEEECCcCcEEEEEecCC-CEEEEcCCCCEEEEEEcCcccCCceEEE
Confidence 0111 233344 124444 667789999999999998888765 499999999999999555443 3
Q ss_pred ----------------------ecccccceecc----ccc----------c-ccceeeeecccc------cceeeeeeec
Q psy2685 861 ----------------------CNRKMEGAGLM----KSD----------V-INNIDSSLAATE------VDVQGWGDDA 897 (992)
Q Consensus 861 ----------------------~~~~~~~~~~~----~~~----------~-~~~~~~~~~~~~------~~~~~~~~~~ 897 (992)
++++++.++.+ +++ | .|||+| +.+|+ ++.++|+ ..
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ 577 (814)
T 3mkq_A 500 LLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNY-FVGGKTYNLAHYTKEMYL-LG 577 (814)
T ss_dssp EEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEE-EETTEEEEEEECSSCCEE-EE
T ss_pred EEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEE-EeCCeeEEEEECCccEEE-EE
Confidence 33445555442 222 4 689999 55777 8889998 77
Q ss_pred --ccCCeEEEEcCCCCceEEEeCCcchhhhhhhhhchhHHHHH-hh---h-ccccchhhHHHHHHhcCCceEEEeeeccc
Q psy2685 898 --DLGNQVYYLDRECSPHVLRIDPTEFKFKLALINHKYEEVLH-IV---R-NSRLVGQSIIAYLQQKGYPEVALHFVKDD 970 (992)
Q Consensus 898 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 970 (992)
..|+.+||+||++.++...+|+++|.|++|+.+++|+++++ ++ + +..+ +.++.||+++||||.||+|++|+
T Consensus 578 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~--~~~~~~l~~~~~~~~a~~~~~~~ 655 (814)
T 3mkq_A 578 YLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSL--TKIARFLEGQEYYEEALNISPDQ 655 (814)
T ss_dssp EEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHH--HHHHHHHHHTTCHHHHHHHCCCH
T ss_pred EEecCCEEEEEcCCCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHH--HHHHHHHHhCCChHHheecCCCc
Confidence 88999999999999999999999999999999999999777 55 7 7767 99999999999999999999999
Q ss_pred cceEEeeeecCCcCc
Q psy2685 971 RTRLTLALECGNIPP 985 (992)
Q Consensus 971 ~~~~~~~~~~~~~~~ 985 (992)
.+||.+|++|||++.
T Consensus 656 ~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 656 DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHHHHHHTCHHH
T ss_pred chheehhhhcCCHHH
Confidence 999999999999874
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-43 Score=431.27 Aligned_cols=419 Identities=14% Similarity=0.204 Sum_probs=331.3
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--EEEEe--------------------------------
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT--LLEKF-------------------------------- 47 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~--~~~~~-------------------------------- 47 (992)
...|.+|.+.|++++|||+|++||+|+.||+|+|||+.+++ ....+
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 46789999999999999999999999999999999986432 22222
Q ss_pred ------------ccCCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECC
Q psy2685 48 ------------DEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDD 114 (992)
Q Consensus 48 ------------~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D 114 (992)
.+|...|.+++|+|+++ .|++|+.|++|++||..++++...+.+|.+.|.+++|+|++++|++|+.|
T Consensus 132 ~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 132 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 34566677777777766 58899999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEe-------cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccC-------------
Q psy2685 115 QTIRIWNWQSRNCICVLT-------GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAP------------- 174 (992)
Q Consensus 115 g~I~vwdl~t~~~i~~l~-------~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~------------- 174 (992)
++|++||..+++++..+. +|.+.|.+++|+|++++|++++.|++|++||+.+.+......
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999999999999988884 799999999999999999999999999999998765432111
Q ss_pred ------CcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe-eccCcc
Q psy2685 175 ------GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-RREQER 247 (992)
Q Consensus 175 ------~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~-~~~~~~ 247 (992)
.+++.++.+++|+...+. ....+.+|...|.+++|+|+|++|++++.|++|++||+.++.....+ ..|...
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCC--cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 156678999999988765 56678899999999999999999999999999999999998776654 233333
Q ss_pred cc------cCEEEEEeCCCeEEEEECCCCeE-----------------------------------------EEEeecCC
Q psy2685 248 FW------SEVIVSNAEDKSIRLWDMTKRTC-----------------------------------------LNTFRREQ 280 (992)
Q Consensus 248 ~~------s~~l~sgs~Dg~I~vwd~~t~~~-----------------------------------------v~~l~~h~ 280 (992)
+. ...+++++.|+.+++|+..++.. +..+ .+.
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~ 448 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PIS 448 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecC
Confidence 22 26788999999999998754321 1111 245
Q ss_pred CCEEEEEEeCCCCEEEEEECCCE-EEEEecCCcce---------------EEeeccEEEEE-eCCeEEEEEeeCCCceEE
Q psy2685 281 ERFWVLVAHPTLNLFAAGHDAGM-VVFKFERERPA---------------YTVHNNVMYYV-KERFLHRLDLTNSKDSVV 343 (992)
Q Consensus 281 ~~V~~la~spdg~~Lasgsddgi-ivw~l~~~~~~---------------~~~~~~~v~~~-~~~~i~i~dl~~~~~~~v 343 (992)
..+.+++|+|+|++||+|+.|+. .+|++...... +...+..++.. .++++++|++.+......
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 67899999999999999998875 58998764321 11122333333 578999999976221111
Q ss_pred EEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceeccCc-cccceEEEEecCCeEEEEEcCC
Q psy2685 344 MQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGK-RSTGISAVWVARNRFAVLDRNH 422 (992)
Q Consensus 344 ~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~-~~~~~s~~w~~~~~~av~~~~g 422 (992)
......|...|.+++|+|||++|++++.+ +++++|++.............+ ...+.++.|+++++++.+..++
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D------~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~ 602 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 602 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS
T ss_pred eeeeeecccceeEEEECCCCCEEEEEECC------CcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCC
Confidence 00123488999999999999999999875 9999999976432111234455 6778889999999988888899
Q ss_pred eEEEEEc
Q psy2685 423 TILIKNL 429 (992)
Q Consensus 423 ~I~i~dl 429 (992)
+|++|++
T Consensus 603 ~i~lW~~ 609 (611)
T 1nr0_A 603 NIKFWNV 609 (611)
T ss_dssp CEEEEEC
T ss_pred CEEEEec
Confidence 9999987
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-41 Score=413.31 Aligned_cols=414 Identities=14% Similarity=0.144 Sum_probs=332.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC--
Q psy2685 6 ETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR-- 83 (992)
Q Consensus 6 ~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~-- 83 (992)
..+.+.+.+++|+|+|++|++++ ++.|++||+.+++....+.+|...|++++|+|+|++|++|+.||+|+|||+.++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 34567889999999999999987 679999999989899999999999999999999999999999999999998653
Q ss_pred eEEEEEccCCCCEEEEEEecCCCEEEEEECC----CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCC-EEEEEECCCe
Q psy2685 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDD----QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSASLDQT 158 (992)
Q Consensus 84 ~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D----g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~Dg~ 158 (992)
.....+.+|.++|.+++|+|+++.|++++.+ +.|++|| +++....+.+|...|.+++|+|+++ .|++|+.|++
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 4556788999999999999999999998875 3666676 5677778899999999999999986 6999999999
Q ss_pred EEEEECCCCccccccCC------------------cccCCCeEEEEEccCCcceEEEEEe-------ccCCCeEEEEEcC
Q psy2685 159 IRVWDISGLRKKNVAPG------------------MGADDRQIKLWRMNDSKAWEVDIFR-------GHYNNVSCVLFHP 213 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~------------------~~~~d~~I~iwd~~~~~~~~i~~l~-------~h~~~V~~v~fsp 213 (992)
|++||....+......+ +++.|++|++||..++. ....+. +|.+.|.+++|+|
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECC
Confidence 99999876433221111 67889999999998776 344553 7999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcc--------cccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEE
Q psy2685 214 KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER--------FWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285 (992)
Q Consensus 214 dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~--------~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~ 285 (992)
++++|++++.|++|++||+.+++++.++..+... ..+..+++++.|+.+++||..++.....+.+|...|++
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence 9999999999999999999999988887643211 12478999999999999999999988889999999999
Q ss_pred EEEeCCCCEEEEEECCC-EEEEEecCCcceEE------------------------------------------------
Q psy2685 286 LVAHPTLNLFAAGHDAG-MVVFKFERERPAYT------------------------------------------------ 316 (992)
Q Consensus 286 la~spdg~~Lasgsddg-iivw~l~~~~~~~~------------------------------------------------ 316 (992)
++|+|+|++|++|+.|+ +.+|++.+......
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 409 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeee
Confidence 99999999999998766 55888654321100
Q ss_pred ----------------------------------------------e--eccEEEE-EeCCeEEEEEeeCCCceEEEEee
Q psy2685 317 ----------------------------------------------V--HNNVMYY-VKERFLHRLDLTNSKDSVVMQLR 347 (992)
Q Consensus 317 ----------------------------------------------~--~~~~v~~-~~~~~i~i~dl~~~~~~~v~~l~ 347 (992)
. .+..++. ..++++++||+.++.......
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-- 487 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-- 487 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE--
T ss_pred cCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec--
Confidence 0 0111221 236789999987654322222
Q ss_pred cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC-CccccceeccCccccceEEEEecCCeE-EEEEcCCeEE
Q psy2685 348 GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK-EESERKEVADGKRSTGISAVWVARNRF-AVLDRNHTIL 425 (992)
Q Consensus 348 ~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~-~~~~~~~~~~~~~~~~~s~~w~~~~~~-av~~~~g~I~ 425 (992)
.+|...|.+++|+|||++|++++.+ +++++|++.. ...........+...+.++.|++++++ +.+..+++|+
T Consensus 488 ~~h~~~v~~v~fspdg~~las~s~d------~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 488 IVHPAEITSVAFSNNGAFLVATDQS------RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETT------SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCC------CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 3578899999999999999998865 8999999875 222111112236677889999998865 4566699999
Q ss_pred EEEcCCc
Q psy2685 426 IKNLKNE 432 (992)
Q Consensus 426 i~dl~~~ 432 (992)
+||+.+.
T Consensus 562 lW~~~~~ 568 (611)
T 1nr0_A 562 VWNMNKP 568 (611)
T ss_dssp EEETTCT
T ss_pred EEECCCc
Confidence 9999753
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.8e-41 Score=402.89 Aligned_cols=410 Identities=23% Similarity=0.439 Sum_probs=326.5
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
.+|+||+++|++++|||||++||+|+.|+.|+||| .+++.+.++.+|.+.|++++|+|++++|++++.|++|+|||. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~ 87 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 87 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-C
Confidence 46999999999999999999999999999999999 578899999999999999999999999999999999999995 6
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECC---------------------------------------
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ--------------------------------------- 123 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~--------------------------------------- 123 (992)
++++..+.+|.++|.+++|+|+++++++++.|+.+++|+..
T Consensus 88 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (577)
T 2ymu_A 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccc
Confidence 77888889999999999998888777776666665555532
Q ss_pred ------------------------------------------CCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 124 ------------------------------------------SRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 124 ------------------------------------------t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
+++.+..+.+|...|.+++|+|+++++++++.|+.|++
T Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~ 247 (577)
T 2ymu_A 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 23344556778899999999999999999999999999
Q ss_pred EECCCCccccccC------------C-----cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q psy2685 162 WDISGLRKKNVAP------------G-----MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED 224 (992)
Q Consensus 162 wd~~~~~~~~~~~------------~-----~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~D 224 (992)
||..+........ . +++.++.+++|+.... ....+.+|...|.+++|+|+++.+++++.|
T Consensus 248 w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d 324 (577)
T 2ymu_A 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDGQTIASASDD 324 (577)
T ss_dssp ECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---EEEEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence 9976533221110 0 5678899999997543 567788999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEE
Q psy2685 225 KSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAA 297 (992)
Q Consensus 225 g~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Las 297 (992)
++|++||.... .+..+..+...+. +..+++++.|+.|++||. +++.+.++..|...|.+++|+|++++|++
T Consensus 325 ~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 325 KTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp SCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 99999998654 4455666655443 378999999999999995 56788889999999999999999999999
Q ss_pred EECCCEE-EEEecCCcc---------e--EEe--eccEEEE-EeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccC
Q psy2685 298 GHDAGMV-VFKFERERP---------A--YTV--HNNVMYY-VKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 362 (992)
Q Consensus 298 gsddgii-vw~l~~~~~---------~--~~~--~~~~v~~-~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspd 362 (992)
|+.++.+ +|+...... + ... .+..+.. ..++.+++||... + .+..+ .+|...|.+++|+|+
T Consensus 403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~--~~~~~-~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q--LLQTL-TGHSSSVRGVAFSPD 478 (577)
T ss_dssp EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C--EEEEE-ECCSSCEEEEEECTT
T ss_pred EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C--EEEEE-cCCCCCEEEEEEcCC
Confidence 9988754 787532211 1 111 2233333 3578999999643 2 23333 357889999999999
Q ss_pred CCEEEEEecCCccccCCeEEEEEeCCCccccceeccCccccceEEEEecCCe-EEEEEcCCeEEEEEcCCc
Q psy2685 363 EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNR-FAVLDRNHTILIKNLKNE 432 (992)
Q Consensus 363 g~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~-~av~~~~g~I~i~dl~~~ 432 (992)
+++|++++.+ +.+++|+.... .......+...+..+.|+++++ ++.+..++.|++||...+
T Consensus 479 ~~~las~~~d------~~i~iw~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 479 GQTIASASDD------KTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 540 (577)
T ss_dssp SCEEEEEETT------SEEEEEETTSC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred CCEEEEEeCC------CEEEEEcCCCC---EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCC
Confidence 9999998765 89999995432 2234556677788899998875 455667999999997543
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-39 Score=389.84 Aligned_cols=407 Identities=23% Similarity=0.437 Sum_probs=328.8
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
+++|.+|.++|++++|+|++++|++++.|++|+|||. +++.+..+.+|.++|.+++|+|++++|++++.|+.+++|+..
T Consensus 50 ~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~ 128 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccc
Confidence 5789999999999999999999999999999999994 677888999999999999999988888777776666666532
Q ss_pred --------------------------------------------------------------------------------
Q psy2685 82 -------------------------------------------------------------------------------- 81 (992)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (992)
T Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~ 208 (577)
T 2ymu_A 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence
Q ss_pred -CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q psy2685 82 -QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160 (992)
Q Consensus 82 -t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~ 160 (992)
+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.+++++.|++|+
T Consensus 209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 23334456678899999999999999999999999999995 5778889999999999999999999999999999999
Q ss_pred EEECCCCcccccc------------CC-----cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q psy2685 161 VWDISGLRKKNVA------------PG-----MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223 (992)
Q Consensus 161 iwd~~~~~~~~~~------------~~-----~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~ 223 (992)
+||..+....... +. +++.++.+++|+.... ....+.+|...+.+++|+|++++|++++.
T Consensus 288 ~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence 9997654322111 10 5678899999998764 45678899999999999999999999999
Q ss_pred CCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEE
Q psy2685 224 DKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFA 296 (992)
Q Consensus 224 Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~La 296 (992)
|+.|++||. +++.+..+..|...+. +..+++++.|+.|++||. +++.+.++.+|...|++++|+|++++|+
T Consensus 365 dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 365 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp TSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 999999995 5667777777766543 378999999999999995 5678888999999999999999999999
Q ss_pred EEECCCE-EEEEecCCcce-------------EEeeccEEEEE-eCCeEEEEEeeCCCceEEEEeecCCCccceeEEEcc
Q psy2685 297 AGHDAGM-VVFKFERERPA-------------YTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA 361 (992)
Q Consensus 297 sgsddgi-ivw~l~~~~~~-------------~~~~~~~v~~~-~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafsp 361 (992)
+++.++. .+|+....... +...+..+... .++.+++||.. ++ .+..+ .+|...|.+++|+|
T Consensus 443 ~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~--~~~~~-~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 443 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ--LLQTL-TGHSSSVRGVAFSP 518 (577)
T ss_dssp EEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC--EEEEE-ECCSSCEEEEEECT
T ss_pred EEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC--EEEEE-eCCCCCEEEEEEcC
Confidence 9998875 57875432211 11122333333 57899999963 33 23334 36788999999999
Q ss_pred CCCEEEEEecCCccccCCeEEEEEeCCCccccceeccCccccceEEEEecCCeEE-EEEcCCeEEEEE
Q psy2685 362 TEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFA-VLDRNHTILIKN 428 (992)
Q Consensus 362 dg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~~a-v~~~~g~I~i~d 428 (992)
+|++|++++.+ |.+++|+.+. ........+.+.+.++.|+++++++ .+..+++|++||
T Consensus 519 dg~~l~s~~~d------g~v~lwd~~~---~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQTIASASDD------KTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETT------SEEEEECTTS---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEECc------CEEEEEeCCC---CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999998765 8999998543 2233455677788899999987644 566699999996
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.9e-40 Score=364.30 Aligned_cols=285 Identities=30% Similarity=0.681 Sum_probs=259.7
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
.++|.+|++.|++++|||++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCC-eeEEEEecCCCCeEEEEEec-CCCEEEEEECCCeE
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTI 159 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~-~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~Dg~I 159 (992)
+++.+..+.+|.+.|.+++|+|+++++++|+.|++|++||++++ .....+.+|...|.+++|+| ++..|++|+.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999877 56678899999999999999 56899999999999
Q ss_pred EEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee
Q psy2685 160 RVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP--KSEVIVSNAEDKSIRLWDMTKRTC 237 (992)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~vwdl~~~~~ 237 (992)
++||++.... ......+|...+..+.|+| ++.+|++++.|++|++||+.++++
T Consensus 166 ~iwd~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 166 KVWSLGQSTP-------------------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp EEEETTCSSC-------------------------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred EEEECCCCCc-------------------------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 9999865331 2223346678899999987 678999999999999999999999
Q ss_pred eeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCC--EEEEEECCCEEEEEe
Q psy2685 238 LNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLN--LFAAGHDAGMVVFKF 308 (992)
Q Consensus 238 l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~--~Lasgsddgiivw~l 308 (992)
+.++.+|...+. +..+++|+.||+|++||+.+++.+.++..|...+++++|+|++. ++++|+++|+++|++
T Consensus 221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 999998877654 37899999999999999999999999999999999999999875 699999999999987
Q ss_pred cCC
Q psy2685 309 ERE 311 (992)
Q Consensus 309 ~~~ 311 (992)
.++
T Consensus 301 ~~~ 303 (304)
T 2ynn_A 301 GND 303 (304)
T ss_dssp C--
T ss_pred ccC
Confidence 543
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.2e-39 Score=422.51 Aligned_cols=419 Identities=15% Similarity=0.263 Sum_probs=343.4
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
..+.+|.+.|++++|+|+++++++|+.||.|++||..+++.+..+.+|.+.|.+++|+|+++++++|+.||.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEec--CCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHH--EYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fsp--d~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~ 160 (992)
++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+++++++.++.+|...|.+++|+|+++.+++++.||+|+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 999999999999999999999 556899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcccccc--------------------------CC----cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEE
Q psy2685 161 VWDISGLRKKNVA--------------------------PG----MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVL 210 (992)
Q Consensus 161 iwd~~~~~~~~~~--------------------------~~----~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~ 210 (992)
+||+.+....... +. ....++.+.+|+..++.. ......+|...|.++.
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL-LAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE-EEEEECSSSSCCCEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc-eeEEcCCCCCceEEEE
Confidence 9998765322110 00 233468899999998874 4444558999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCC-----------------------
Q psy2685 211 FHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDK----------------------- 260 (992)
Q Consensus 211 fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg----------------------- 260 (992)
|+|++.++++++.|+.|++||+.++..+..+..|...+. +..+++++.|+
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Confidence 999999999999999999999999888877776655432 13455555555
Q ss_pred --------------------------------------------------------eEEEEECCCCeEEEEeecCCCCEE
Q psy2685 261 --------------------------------------------------------SIRLWDMTKRTCLNTFRREQERFW 284 (992)
Q Consensus 261 --------------------------------------------------------~I~vwd~~t~~~v~~l~~h~~~V~ 284 (992)
.|++||+.+++.+..+.+|...|.
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCC
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceE
Confidence 455555555666666778889999
Q ss_pred EEEEeCCCCEEEEEECCC-EEEEEecCCcceE-----------Ee--eccEEEEEeCCeEEEEEeeCCCceEEEEeecCC
Q psy2685 285 VLVAHPTLNLFAAGHDAG-MVVFKFERERPAY-----------TV--HNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGG 350 (992)
Q Consensus 285 ~la~spdg~~Lasgsddg-iivw~l~~~~~~~-----------~~--~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~ 350 (992)
+++|+|+++++++|+.++ +.+|++.+..... .. .+..+....++.+++||+.+++..... .+|
T Consensus 1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---~~~ 1084 (1249)
T 3sfz_A 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF---TCH 1084 (1249)
T ss_dssp CEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEE---ECC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEE---ccc
Confidence 999999999999998776 5589987654331 11 222344456899999999887755443 357
Q ss_pred CccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceeccCccccceEEEEecCCe-EEEEEcCCeEEEEEc
Q psy2685 351 RIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNR-FAVLDRNHTILIKNL 429 (992)
Q Consensus 351 ~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~-~av~~~~g~I~i~dl 429 (992)
...|.+++|+|+|+.+++++.+ |.+++|++..... ......+.+.+..+.|+++++ ++++..+|.|.+||+
T Consensus 1085 ~~~v~~~~~s~d~~~l~s~s~d------~~v~iwd~~~~~~--~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1085 QGTVLSCAISSDATKFSSTSAD------KTAKIWSFDLLSP--LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp SSCCCCEEECSSSSSCEEECCS------SCCCEECSSSSSC--SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCcce--eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 8889999999999999988765 8999999876543 223345566778889998875 555666999999999
Q ss_pred CCcc
Q psy2685 430 KNEY 433 (992)
Q Consensus 430 ~~~~ 433 (992)
.+..
T Consensus 1157 ~~~~ 1160 (1249)
T 3sfz_A 1157 SDGQ 1160 (1249)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 7643
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-39 Score=375.08 Aligned_cols=279 Identities=27% Similarity=0.523 Sum_probs=261.7
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
..+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||+|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iw 162 (992)
++++..+.+|...|.+++|+|++.++++|+.|++|++||++++.++.++.+|...|.++.|+|++.++++|+.|++|++|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC--------------------CCEEEEEe
Q psy2685 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK--------------------SEVIVSNA 222 (992)
Q Consensus 163 d~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd--------------------g~~L~s~s 222 (992)
|+.+.. ....+.+|...|.++.|+|+ +.+|++|+
T Consensus 262 d~~~~~--------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 262 VVATKE--------------------------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp ETTTCC--------------------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred ECCCCc--------------------------eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 987642 45667899999999999996 67899999
Q ss_pred CCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEE
Q psy2685 223 EDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLF 295 (992)
Q Consensus 223 ~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~L 295 (992)
.|++|++||+.++.++..+.+|...+. +.++++|+.|+.|++||+.+++++.++.+|...|++++|+|++++|
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence 999999999999999999998876653 3789999999999999999999999999999999999999999999
Q ss_pred EEEECCCEE-EEE
Q psy2685 296 AAGHDAGMV-VFK 307 (992)
Q Consensus 296 asgsddgii-vw~ 307 (992)
++|+.|+.+ +|+
T Consensus 396 ~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 396 VTGSVDQTVKVWE 408 (410)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEeCCCcEEEEe
Confidence 999987754 564
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-37 Score=350.88 Aligned_cols=278 Identities=19% Similarity=0.358 Sum_probs=253.7
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
.+|.+|.++|++++|+|++++|++|+.||.|++||..+++.+..+..|...|.+++|+|+++++++|+.|+.|++||+.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C----eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCe
Q psy2685 83 R----KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQT 158 (992)
Q Consensus 83 ~----~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~ 158 (992)
+ .....+.+|.+.|.++.|++++. +++++.|++|++||+++++++.++.+|...|.+++|+|+++++++|+.||+
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 5 46677889999999999998875 899999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy2685 159 IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCL 238 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l 238 (992)
|++||+++.. ....+.+|...|.+++|+|++++|++++.|++|++||+.+++.+
T Consensus 208 v~~wd~~~~~--------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 208 AKLWDVREGM--------------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp EEEEETTTCS--------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCCe--------------------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 9999987532 55678899999999999999999999999999999999998887
Q ss_pred eEeeccCc--cc-------ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCE-EEEE
Q psy2685 239 NTFRREQE--RF-------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGM-VVFK 307 (992)
Q Consensus 239 ~~~~~~~~--~~-------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgi-ivw~ 307 (992)
..+..... .+ .+.++++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|+|.+|++|+.|+. .+|+
T Consensus 262 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 77654321 12 2489999999999999999999999999999999999999999999999997764 4663
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=351.68 Aligned_cols=281 Identities=17% Similarity=0.355 Sum_probs=256.2
Q ss_pred cEEeecCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEEcCCCeE--EEEeccCCCCEEEEEEecCCCEEEEEECCCeE
Q psy2685 2 LTKFETKSARVKGLSFHPK----RPWILSSLHNGVIQLWDYRMNTL--LEKFDEHEGPVRGICFHNQQPIFVSGGDDYKI 75 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspd----g~~Lasg~~dg~I~IWd~~~g~~--~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I 75 (992)
++.+++|.+.|++++|+|+ +.+|++|+.|++|++||+.+++. ...+.+|...|.+++|+|+++.+++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3567899999999999985 56899999999999999887754 45688999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC
Q psy2685 76 KVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL 155 (992)
Q Consensus 76 ~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~ 155 (992)
++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++|+.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy2685 156 DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235 (992)
Q Consensus 156 Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~ 235 (992)
||.|++||+++.+ .+..+.+|..+|.+++|+|++++|++++.|++|++||+.++
T Consensus 185 dg~i~iwd~~~~~--------------------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 185 DGIINIFDIATGK--------------------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp TSCEEEEETTTTE--------------------------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred CCeEEEEECCCCc--------------------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 9999999987642 56678899999999999999999999999999999999999
Q ss_pred eeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCE-EEEE
Q psy2685 236 TCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGM-VVFK 307 (992)
Q Consensus 236 ~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgi-ivw~ 307 (992)
.....+..|...+. +.++++++.|++|++||+.+++++.++.+|.+.|++++|+|+++.|++++.|+. .+|+
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 99989888876553 378999999999999999999999999999999999999999999999987764 4665
Q ss_pred e
Q psy2685 308 F 308 (992)
Q Consensus 308 l 308 (992)
.
T Consensus 319 ~ 319 (321)
T 3ow8_A 319 C 319 (321)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-37 Score=344.08 Aligned_cols=281 Identities=25% Similarity=0.512 Sum_probs=256.4
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
.++.+|.++|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iw 162 (992)
++.+..+.+|...|.++.|+|+++++++|+.|+.|++||+++++++..+..|..+|.+++|+|+++++++++.||.|++|
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 176 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 163 d~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
|+++.+. .......+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus 177 d~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 177 DTASGQC-------------------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp ETTTCCE-------------------------EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCce-------------------------eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 9876421 112234566789999999999999999999999999999999998888
Q ss_pred ccCcccc----------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEE---CCCEEEEEe
Q psy2685 243 REQERFW----------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH---DAGMVVFKF 308 (992)
Q Consensus 243 ~~~~~~~----------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgs---ddgiivw~l 308 (992)
.+..... +.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++ |..+.+|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 7654321 36899999999999999999999999999999999999999999999986 344567764
No 13
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-36 Score=368.24 Aligned_cols=390 Identities=14% Similarity=0.234 Sum_probs=303.7
Q ss_pred cEEeecCCCC-EEEEEEcC--CCCEEEEEEcCCeEEEEEcCCC--------eEEEEeccCCCCEEEEEEecC--------
Q psy2685 2 LTKFETKSAR-VKGLSFHP--KRPWILSSLHNGVIQLWDYRMN--------TLLEKFDEHEGPVRGICFHNQ-------- 62 (992)
Q Consensus 2 l~~l~~H~~~-V~~iafsp--dg~~Lasg~~dg~I~IWd~~~g--------~~~~~~~~h~~~V~~l~fspd-------- 62 (992)
...+.+|.+. |++++|+| ++++|++|+.||.|++||+.++ .....+..|..+|.+++|+|+
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 4678999999 99999999 9999999999999999999744 555555555555555555554
Q ss_pred ------------------------------------CC-EEEEEECCCeEEEEEcCCCeEEEEEccCCC---CEEEEEEe
Q psy2685 63 ------------------------------------QP-IFVSGGDDYKIKVWNYKQRKCIFTLLGHLD---YIRTTFFH 102 (992)
Q Consensus 63 ------------------------------------g~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~i~fs 102 (992)
++ .+++++.||.|++||..+++....+.+|.. .|.+++|+
T Consensus 136 ~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred cCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 44 677788889999999999999999999999 99999999
Q ss_pred cC-CCEEEEEECCCeEEEEECCCCeeEEEE-e---cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccC---
Q psy2685 103 HE-YPWILSASDDQTIRIWNWQSRNCICVL-T---GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAP--- 174 (992)
Q Consensus 103 pd-~~~L~sgs~Dg~I~vwdl~t~~~i~~l-~---~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~--- 174 (992)
|+ +.++++++.||.|++||+++++.+..+ . +|...|.+++|+ +++++++++.||.|++||+++.+......
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 99 999999999999999999999999998 6 899999999999 99999999999999999998654332111
Q ss_pred ------------------CcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC----------------------
Q psy2685 175 ------------------GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK---------------------- 214 (992)
Q Consensus 175 ------------------~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd---------------------- 214 (992)
.+++.++.+++|++.+.. ....+.+|.+.|.+++| |+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE--VLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE--EEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc--EEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence 056788999999988744 45566666666666666 44
Q ss_pred -----------CCEEEEEeCCCeEEEEECCCC----------------------------------eeeeEeeccCcccc
Q psy2685 215 -----------SEVIVSNAEDKSIRLWDMTKR----------------------------------TCLNTFRREQERFW 249 (992)
Q Consensus 215 -----------g~~L~s~s~Dg~I~vwdl~~~----------------------------------~~l~~~~~~~~~~~ 249 (992)
+..+++++.|+.+++||+.++ +.+..+. +...+.
T Consensus 372 ~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp CSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred cCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 556666666666666665422 2222222 111111
Q ss_pred -----cCEEEEEeC-CCeEEEEECCCCeEE-EEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEE
Q psy2685 250 -----SEVIVSNAE-DKSIRLWDMTKRTCL-NTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVM 322 (992)
Q Consensus 250 -----s~~l~sgs~-Dg~I~vwd~~t~~~v-~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v 322 (992)
+..+++++. |+.|++||+.++... ..+..|...|.+++|+|++++|++|+.++.+
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i------------------ 512 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI------------------ 512 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCE------------------
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeE------------------
Confidence 578999999 999999999988765 6667889999999999999999999876543
Q ss_pred EEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEcc----------CCCEEEEEecCCccccCCeEEEEEeCCCccc
Q psy2685 323 YYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA----------TEHSILVTTRNANNFENSTYDLYMIPKEESE 392 (992)
Q Consensus 323 ~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafsp----------dg~~lav~~~~~~~~~~g~i~i~~l~~~~~~ 392 (992)
++||+.+++ .+..+...|...|.+++|+| ++++|++++.+ |.+++|++.....
T Consensus 513 --------~iw~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~- 575 (615)
T 1pgu_A 513 --------LLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------TNIFIYSVKRPMK- 575 (615)
T ss_dssp --------EEEETTTTE--EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------SCEEEEESSCTTC-
T ss_pred --------EEeeCCCCc--ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC------CcEEEEECCCCce-
Confidence 346664433 22333333788999999999 99999999865 8999999976531
Q ss_pred cceeccCccccceEEEEecCCeEEEEEcCCeEEEEEcCC
Q psy2685 393 RKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKN 431 (992)
Q Consensus 393 ~~~~~~~~~~~~~s~~w~~~~~~av~~~~g~I~i~dl~~ 431 (992)
.......+...+.++.|++++.++.+..+++|.+|+++.
T Consensus 576 ~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 576 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred echhhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 223345667788899999988877777899999999864
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-36 Score=366.62 Aligned_cols=410 Identities=14% Similarity=0.187 Sum_probs=327.8
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC----eEEEEeccCCCC-EEEEEEec--CCCEEEEEECCCeEEEE
Q psy2685 6 ETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGP-VRGICFHN--QQPIFVSGGDDYKIKVW 78 (992)
Q Consensus 6 ~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g----~~~~~~~~h~~~-V~~l~fsp--dg~~Lasgs~Dg~I~VW 78 (992)
..|.+.|++++|+|++++|++++ ++.|.+||+.++ +....+.+|.+. |.+++|+| ++++|++|+.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46889999999999999999998 889999999998 889999999999 99999999 99999999999999999
Q ss_pred EcCCC--------eEEEEEccCCCCEEEEEEecCCCEEEEEECC----CeEEEEECCCCeeEEEEecCCCCeEEEEEecC
Q psy2685 79 NYKQR--------KCIFTLLGHLDYIRTTFFHHEYPWILSASDD----QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT 146 (992)
Q Consensus 79 d~~t~--------~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D----g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspd 146 (992)
|+.++ +....+..|..+|.+++|+|+++++++++.+ +.|.+|| +++.+..+.+|...|.+++|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 99754 6777888999999999999999999999988 6888887 67788899999999999999999
Q ss_pred CC-EEEEEECCCeEEEEECCCCccccc----------------c-C-C----cccCCCeEEEEEccCCcceEEEEE-e--
Q psy2685 147 DD-IVVSASLDQTIRVWDISGLRKKNV----------------A-P-G----MGADDRQIKLWRMNDSKAWEVDIF-R-- 200 (992)
Q Consensus 147 g~-~L~sgs~Dg~I~iwd~~~~~~~~~----------------~-~-~----~~~~d~~I~iwd~~~~~~~~i~~l-~-- 200 (992)
++ .+++++.|+.|++||....+.... . . + +++.++.|++||+.+++ .+..+ .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~ 249 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQ 249 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECCBTT
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--EeEEecccc
Confidence 97 899999999999999875432211 0 1 1 56778999999998876 45566 5
Q ss_pred -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcc----c------ccCEEEEEeCCCeEEEEECCC
Q psy2685 201 -GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER----F------WSEVIVSNAEDKSIRLWDMTK 269 (992)
Q Consensus 201 -~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~----~------~s~~l~sgs~Dg~I~vwd~~t 269 (992)
+|...|.++.|+ ++.+|++++.|+.|++||+.+++.+..+..+... . .+..+++++.|+.|++||+.+
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred cccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 899999999999 9999999999999999999999998888866311 1 247899999999999999999
Q ss_pred CeEEEEeecCCCCEEEEEEeCC---------------------------------CCEEEEEECCC-EEEEEecCCc---
Q psy2685 270 RTCLNTFRREQERFWVLVAHPT---------------------------------LNLFAAGHDAG-MVVFKFERER--- 312 (992)
Q Consensus 270 ~~~v~~l~~h~~~V~~la~spd---------------------------------g~~Lasgsddg-iivw~l~~~~--- 312 (992)
++.+..+.+|...|.+++| |+ +..+++++.++ +.+|++....
T Consensus 329 ~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred CcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 8888888777776666666 54 55555555444 3456554321
Q ss_pred -------------------------------ce-----------EEeeccEEEEEe--CCeEEEEEeeCCCceEEEEeec
Q psy2685 313 -------------------------------PA-----------YTVHNNVMYYVK--ERFLHRLDLTNSKDSVVMQLRG 348 (992)
Q Consensus 313 -------------------------------~~-----------~~~~~~~v~~~~--~~~i~i~dl~~~~~~~v~~l~~ 348 (992)
+. ...+++.++... ++.+++||+.+++... . ...
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~-~~~ 485 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-D-LKT 485 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-E-CSS
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-c-ccC
Confidence 10 001133444443 7889999986543222 2 224
Q ss_pred CCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceeccC-ccccceEEEEec----------CCe-EE
Q psy2685 349 GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADG-KRSTGISAVWVA----------RNR-FA 416 (992)
Q Consensus 349 ~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~-~~~~~~s~~w~~----------~~~-~a 416 (992)
.|...|.+++|+|+|+++++++.+ |.+++|++...... ..... +...+..+.|++ +++ ++
T Consensus 486 ~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 486 PLRAKPSYISISPSETYIAAGDVM------GKILLYDLQSREVK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE--ECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred CccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCcce--eEeecCCCCceeEEEEcCccccccccccCCCEEE
Confidence 578899999999999999999865 99999999765431 12233 667788899998 665 45
Q ss_pred EEEcCCeEEEEEcCCc
Q psy2685 417 VLDRNHTILIKNLKNE 432 (992)
Q Consensus 417 v~~~~g~I~i~dl~~~ 432 (992)
++..++.|.+||+.+.
T Consensus 558 ~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEETTSCEEEEESSCT
T ss_pred EEcCCCcEEEEECCCC
Confidence 5666999999999874
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7e-37 Score=347.53 Aligned_cols=279 Identities=21% Similarity=0.340 Sum_probs=252.0
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+|++|.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|+|..+++|+.|+.+++|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC------eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEec--CCCEEEEE
Q psy2685 82 QR------KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP--TDDIVVSA 153 (992)
Q Consensus 82 t~------~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fsp--dg~~L~sg 153 (992)
.. .....+.+|.+.|.++.|+|++..|++|+.|++|++||+++++++..+.+|...|.+++|+| +++.|++|
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 43 23456678999999999999999999999999999999999999999999999999999988 46899999
Q ss_pred ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy2685 154 SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT 233 (992)
Q Consensus 154 s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~ 233 (992)
+.||+|++||+++.+ ++..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 217 s~Dg~v~~wd~~~~~--------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQ--------------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ETTSCEEEEETTTCC--------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eCCCeEEEEECCCCc--------------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 999999999987642 566778999999999999999999999999999999999
Q ss_pred CCeeeeEeeccCcc--c-------ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE
Q psy2685 234 KRTCLNTFRREQER--F-------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV 304 (992)
Q Consensus 234 ~~~~l~~~~~~~~~--~-------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgii 304 (992)
+++.+..+..+... . .+.++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.|+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCE
Confidence 98877666543221 1 24899999999999999999999999999999999999999999999999988754
Q ss_pred -EE
Q psy2685 305 -VF 306 (992)
Q Consensus 305 -vw 306 (992)
+|
T Consensus 351 ~vW 353 (354)
T 2pbi_B 351 RVW 353 (354)
T ss_dssp EEE
T ss_pred Eec
Confidence 55
No 16
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-36 Score=400.32 Aligned_cols=421 Identities=17% Similarity=0.285 Sum_probs=341.1
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEec--CCCEEEEEECCCeEEEEE
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHN--QQPIFVSGGDDYKIKVWN 79 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~VWd 79 (992)
+.++.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++..+++|+.||.|++||
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence 457889999999999999999999999999999999999999999999999999999999 555899999999999999
Q ss_pred cCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE----------------------------
Q psy2685 80 YKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL---------------------------- 131 (992)
Q Consensus 80 ~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l---------------------------- 131 (992)
+.++++...+.+|.+.|.+++|+|+++++++|+.||.|++||+.+++....+
T Consensus 730 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp TTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred CCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence 9999999999999999999999999999999999999999999876544332
Q ss_pred ---------------------------ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCC---------
Q psy2685 132 ---------------------------TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPG--------- 175 (992)
Q Consensus 132 ---------------------------~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~--------- 175 (992)
.+|...|.+++|+|+++.+++++.||.|++||+.+........+
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE
Confidence 16778899999999999999999999999999987654322211
Q ss_pred ---------cccCCCeEEEEEccCCcce---------------------------EEEE--------EeccCCCeEEEEE
Q psy2685 176 ---------MGADDRQIKLWRMNDSKAW---------------------------EVDI--------FRGHYNNVSCVLF 211 (992)
Q Consensus 176 ---------~~~~d~~I~iwd~~~~~~~---------------------------~i~~--------l~~h~~~V~~v~f 211 (992)
+++.++.+++|+....... .... ...+...+.+++|
T Consensus 890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 969 (1249)
T 3sfz_A 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence 6778999999997531100 0000 1123457999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEE
Q psy2685 212 HPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW 284 (992)
Q Consensus 212 spdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~ 284 (992)
+|+++++++|+.||.|++||+.++.....+..|...+. +..+++++.||.|++||+.+++... +..|...+.
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~ 1048 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK 1048 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEE
Confidence 99999999999999999999999998888887776553 3789999999999999999988763 558889999
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCcceEEe--------------eccEEEE-EeCCeEEEEEeeCCCceEEEEeecC
Q psy2685 285 VLVAHPTLNLFAAGHDAGMVVFKFERERPAYTV--------------HNNVMYY-VKERFLHRLDLTNSKDSVVMQLRGG 349 (992)
Q Consensus 285 ~la~spdg~~Lasgsddgiivw~l~~~~~~~~~--------------~~~~v~~-~~~~~i~i~dl~~~~~~~v~~l~~~ 349 (992)
+++|+|++.+++.+.++.+.+|++.+.++.... .+..++. ..++++++||+.+++.... + .+
T Consensus 1049 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~--l-~~ 1125 (1249)
T 3sfz_A 1049 DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--L-KG 1125 (1249)
T ss_dssp EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC--C-CC
T ss_pred EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee--e-cc
Confidence 999999887766666666779998776654222 2222333 3578999999987664332 2 35
Q ss_pred CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccc-------eeccCccccceEEEEecCCeEEEEEcCC
Q psy2685 350 GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERK-------EVADGKRSTGISAVWVARNRFAVLDRNH 422 (992)
Q Consensus 350 ~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~-------~~~~~~~~~~~s~~w~~~~~~av~~~~g 422 (992)
|...|.+++|+|+|+++++++.+ |.+++|++........ .....+.+.+.++.|++++++++..+ |
T Consensus 1126 h~~~v~~~~~s~dg~~lat~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g 1198 (1249)
T 3sfz_A 1126 HNGCVRCSAFSLDGILLATGDDN------GEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-G 1198 (1249)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT------SCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-S
T ss_pred CCCcEEEEEECCCCCEEEEEeCC------CEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-C
Confidence 78899999999999999999865 8999999886543211 11234566788899999998887665 9
Q ss_pred eEEEEEcCCcc
Q psy2685 423 TILIKNLKNEY 433 (992)
Q Consensus 423 ~I~i~dl~~~~ 433 (992)
.+.+||+.+..
T Consensus 1199 ~v~vwd~~~g~ 1209 (1249)
T 3sfz_A 1199 YLKWWNVATGD 1209 (1249)
T ss_dssp SEEEBCSSSCB
T ss_pred eEEEEECCCCc
Confidence 99999987654
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=340.63 Aligned_cols=318 Identities=17% Similarity=0.320 Sum_probs=249.9
Q ss_pred cEEeecCCC-CEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEE---EeccCCCCEEEEEEecCCCEEEEEECCCeEEE
Q psy2685 2 LTKFETKSA-RVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLE---KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKV 77 (992)
Q Consensus 2 l~~l~~H~~-~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~---~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~V 77 (992)
+.++.+|.+ .|.+++|+|+|++|++|+.||.|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++|++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 578999988 99999999999999999999999999998886432 23679999999999999999999999999999
Q ss_pred EEcCCC--eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCC---eeEEEEecCCCCeEEEEEecCCCEEEE
Q psy2685 78 WNYKQR--KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR---NCICVLTGHNHYVMCAQFHPTDDIVVS 152 (992)
Q Consensus 78 Wd~~t~--~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~---~~i~~l~~h~~~V~sl~fspdg~~L~s 152 (992)
||..++ +++..+.+|.+.|.+++|+|++++|++|+.|++|++||++++ .++..+.+|...|.+++|+|++++|++
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 999876 457788999999999999999999999999999999999875 456778899999999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy2685 153 ASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232 (992)
Q Consensus 153 gs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl 232 (992)
|+.|++|++||...... .+...+.+|...|.+++|+|++++|++++.|++|++||.
T Consensus 168 ~s~d~~i~~w~~~~~~~------------------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDW------------------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EETTSCEEEEEEETTEE------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EeCCCcEEEEEecCCCE------------------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999764321 245678899999999999999999999999999999986
Q ss_pred CCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCEEEEEEeCCCCEEEEEECCCE-EEEEecC
Q psy2685 233 TKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRR-EQERFWVLVAHPTLNLFAAGHDAGM-VVFKFER 310 (992)
Q Consensus 233 ~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~-h~~~V~~la~spdg~~Lasgsddgi-ivw~l~~ 310 (992)
.......... ..+.+ ...+++.++.+ |...|++++|+|++..|++++.|+. .+|+...
T Consensus 224 ~~~~~~~~~~------------~~~~~--------~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 224 YLPGNEQGVA------------CSGSD--------PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp ECTTCTTCCC------------CC-----------CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred ccCCCCccce------------eeccC--------CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 4321100000 00000 11244555654 7889999999999999999876654 3554432
Q ss_pred CcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCC-EEEEEecCCccccCCeEEEEEeCCC
Q psy2685 311 ERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~-~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
..... ............+|...|.+++|+|++. .|++++.+ |.+++|++...
T Consensus 284 ~~~~~---------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D------g~v~~W~~~~~ 336 (345)
T 3fm0_A 284 NSDPQ---------------------QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD------GEVAFWKYQRP 336 (345)
T ss_dssp TSCTT---------------------SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT------SCEEEEEECC-
T ss_pred CCCcc---------------------eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC------CcEEEEEecCC
Confidence 21000 0000011122246888999999999985 88888765 99999998764
Q ss_pred c
Q psy2685 390 E 390 (992)
Q Consensus 390 ~ 390 (992)
.
T Consensus 337 ~ 337 (345)
T 3fm0_A 337 E 337 (345)
T ss_dssp -
T ss_pred C
Confidence 3
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-35 Score=332.44 Aligned_cols=296 Identities=19% Similarity=0.372 Sum_probs=249.1
Q ss_pred cEEeecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEEcCC-----CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeE
Q psy2685 2 LTKFETKSARVKGLSFHPKR-PWILSSLHNGVIQLWDYRM-----NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKI 75 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg-~~Lasg~~dg~I~IWd~~~-----g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I 75 (992)
..+|++|.++|++++|+|++ ++|++|+.|++|++||+.. +..+..+.+|...|.+++|+|++++|++|+.||+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 46899999999999999965 7999999999999999753 34577889999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecC------CCE
Q psy2685 76 KVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT------DDI 149 (992)
Q Consensus 76 ~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspd------g~~ 149 (992)
++||+.+++.+..+.+|.+.|.+++|+|++.++++|+.|++|++||++ +.++..+.+|...|.++.|+|. +..
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999999999999999999999999999999999999986 5678889999999999999985 448
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~v 229 (992)
+++++.|++|++||++... ....+.+|...|.+++|+|++++|++++.|++|++
T Consensus 169 l~s~~~d~~i~~wd~~~~~--------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQ--------------------------IEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp EEEEETTSCEEEEETTTTE--------------------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EEEEeCCCEEEEEECCcch--------------------------hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999999999987532 45667899999999999999999999999999999
Q ss_pred EECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEec
Q psy2685 230 WDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFE 309 (992)
Q Consensus 230 wdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~ 309 (992)
||+.+++. +.++.. ...+.+++|+|++.++++++++++.+|++.
T Consensus 223 wd~~~~~~-----------------------------------~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 223 WNLAAKKA-----------------------------------MYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLD 266 (319)
T ss_dssp EETTTTEE-----------------------------------EEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred EECCCCcE-----------------------------------EEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence 98765544 333332 357899999999999999999998888765
Q ss_pred CCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 310 RERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
..... .++..... .....+...+.+++|+|||++|++++.+ |.+++|++..
T Consensus 267 ~~~~~------------------~~~~~~~~----~~~~~~~~~v~~~~~spdg~~l~sg~~D------g~i~vWd~~t 317 (319)
T 3frx_A 267 PQYLV------------------DDLRPEFA----GYSKAAEPHAVSLAWSADGQTLFAGYTD------NVIRVWQVMT 317 (319)
T ss_dssp TEEEE------------------EEECCCCT----TCCGGGCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEE
T ss_pred cCeee------------------eccCcccc----ccccCcCcceeEEEECCCCCEEEEeecC------ceEEEEEEee
Confidence 32211 11111100 0011245678899999999999998865 9999999753
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-37 Score=353.98 Aligned_cols=285 Identities=20% Similarity=0.383 Sum_probs=251.3
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
.++|++|.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|+|++|++|+.|+.|++||+.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCe-------EEEEEccCCCCEEEEEEecCC-CEEEEEECCCeEEEEECCCCeeEEEE-----ecCCCCeEEEEEec-CC
Q psy2685 82 QRK-------CIFTLLGHLDYIRTTFFHHEY-PWILSASDDQTIRIWNWQSRNCICVL-----TGHNHYVMCAQFHP-TD 147 (992)
Q Consensus 82 t~~-------~~~~l~~h~~~V~~i~fspd~-~~L~sgs~Dg~I~vwdl~t~~~i~~l-----~~h~~~V~sl~fsp-dg 147 (992)
+.. ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+++++++..+ .+|...|.+++|+| ++
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence 532 234567899999999999974 57999999999999999999998888 67999999999987 78
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy2685 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSI 227 (992)
Q Consensus 148 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I 227 (992)
+++++|+.||+|++||++... .....+.+|.+.|.+++|+|++++|++++.|++|
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITS-------------------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTC-------------------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred CEEEEEECCCeEEEEECCCCC-------------------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 999999999999999987421 1456678999999999999999999999999999
Q ss_pred EEEECCCCeeeeEeeccCcc-------c-------ccCEEEEEeCCCeEEEEECCCCeEEEEe----ecCCCCEEEEEEe
Q psy2685 228 RLWDMTKRTCLNTFRREQER-------F-------WSEVIVSNAEDKSIRLWDMTKRTCLNTF----RREQERFWVLVAH 289 (992)
Q Consensus 228 ~vwdl~~~~~l~~~~~~~~~-------~-------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l----~~h~~~V~~la~s 289 (992)
++||+.++..+..+..+... + .+.++++|+.||.|++||..+++.+..+ .+|.+.|++++|+
T Consensus 274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353 (380)
T ss_dssp EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence 99999999988877654321 1 2489999999999999999999988777 5789999999999
Q ss_pred CCCCEEEEEECCCE-EEEEecCC
Q psy2685 290 PTLNLFAAGHDAGM-VVFKFERE 311 (992)
Q Consensus 290 pdg~~Lasgsddgi-ivw~l~~~ 311 (992)
|+|++|++|+.|+. .+|++...
T Consensus 354 ~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 354 SDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999997764 46766544
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-36 Score=346.92 Aligned_cols=281 Identities=26% Similarity=0.463 Sum_probs=250.6
Q ss_pred EEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 45 EKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124 (992)
Q Consensus 45 ~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t 124 (992)
..+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCC
Q psy2685 125 RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYN 204 (992)
Q Consensus 125 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~ 204 (992)
++++.++.+|...|.+++|+|+++++++|+.|++|++||+++.. ++..+.+|..
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~--------------------------~~~~~~~h~~ 235 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--------------------------CVKTFTGHRE 235 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--------------------------EEEEEECCSS
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------------------------EEEEEeCCCc
Confidence 99999999999999999999999999999999999999987642 5667889999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc---------------------------cCEEEEEe
Q psy2685 205 NVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW---------------------------SEVIVSNA 257 (992)
Q Consensus 205 ~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~---------------------------s~~l~sgs 257 (992)
.|.++.|+|++.+|++++.|++|++||+.++++...+..|...+. +.++++|+
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 999999999999999999999999999999988887776654321 34899999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeC
Q psy2685 258 EDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTN 337 (992)
Q Consensus 258 ~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~ 337 (992)
.|+.|++||+.++.++.++.+|.+.|.+++|+|++++|++|+.|+.+ ++||+.+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i--------------------------~vwd~~~ 369 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL--------------------------RVWDYKN 369 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE--------------------------EEECCTT
T ss_pred CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE--------------------------EEEECCC
Confidence 99999999999999999999999999999999999999999887643 4466654
Q ss_pred CCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEe
Q psy2685 338 SKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMI 386 (992)
Q Consensus 338 ~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l 386 (992)
++.... + .+|...|++++|+|++.++++++.+ |++++|++
T Consensus 370 ~~~~~~--~-~~h~~~v~~l~~~~~~~~l~sgs~D------~~i~vW~~ 409 (410)
T 1vyh_C 370 KRCMKT--L-NAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWEC 409 (410)
T ss_dssp SCCCEE--E-ECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC-
T ss_pred CceEEE--E-cCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeC
Confidence 443332 2 2578899999999999999998865 99999974
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-35 Score=327.24 Aligned_cols=284 Identities=23% Similarity=0.426 Sum_probs=244.4
Q ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEEC
Q psy2685 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW 122 (992)
Q Consensus 43 ~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl 122 (992)
...++.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc
Q psy2685 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH 202 (992)
Q Consensus 123 ~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h 202 (992)
.+++++..+.+|...|.+++|+|+++++++|+.||+|++||+++.. .....+.+|
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------------------------~~~~~~~~h 139 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------------------ALEQTFEGH 139 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------------------------EEEEEECCC
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------------------------chhhhhccc
Confidence 9999999999999999999999999999999999999999986532 145667899
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEeeccC-ccc---------ccCEEEEEeCCCeEEEEECCCCe
Q psy2685 203 YNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ-ERF---------WSEVIVSNAEDKSIRLWDMTKRT 271 (992)
Q Consensus 203 ~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~-~~~---------~s~~l~sgs~Dg~I~vwd~~t~~ 271 (992)
...|.+++|+| ++.+|++|+.|++|++||+.++.....+..+. ..+ .+.++++++.|++|++||+.+++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 99999999999 67899999999999999998876655554332 211 13689999999999999999999
Q ss_pred EEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCC
Q psy2685 272 CLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGR 351 (992)
Q Consensus 272 ~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~ 351 (992)
++.++.+|...|.+++|+|++++|++|+.|+. +++||+.+.+... .+. .+.
T Consensus 220 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~--------------------------i~iWd~~~~~~~~--~~~-~~~ 270 (304)
T 2ynn_A 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT--------------------------LKIWNSSTYKVEK--TLN-VGL 270 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSC--------------------------EEEEETTTCCEEE--EEC-CSS
T ss_pred cceeeCCCCCCEEEEEECCCCCEEEEEcCCCe--------------------------EEEEECCCCceee--ecc-CCC
Confidence 99999999999999999999999999987664 3457776555332 332 456
Q ss_pred ccceeEEEccCCC--EEEEEecCCccccCCeEEEEEeC
Q psy2685 352 IPAHSISYNATEH--SILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 352 ~~I~~lafspdg~--~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
..+++++|+|++. ++++++++ .+.+|.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~asg~~~-------g~~~~~~~ 301 (304)
T 2ynn_A 271 ERSWCIATHPTGRKNYIASGFDN-------GFTVLSLG 301 (304)
T ss_dssp SSEEEEEECTTCGGGCEEEEETT-------EEEEEECC
T ss_pred ccEEEEEECCCCCceEEEEecCC-------ceEEEEec
Confidence 7889999999886 56766654 56666654
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=332.17 Aligned_cols=282 Identities=18% Similarity=0.378 Sum_probs=230.3
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC--eEEEEe-cc-CCCCEEEEEEecCCCEEEEEECCCeEEE
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN--TLLEKF-DE-HEGPVRGICFHNQQPIFVSGGDDYKIKV 77 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g--~~~~~~-~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~V 77 (992)
+++|++|.++|.+++|+|+ +|++|+.||.|++||+.++ +....+ .. |.+.|.+++|+|++++|++|+.|++|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 5789999999999999998 8999999999999999875 455666 44 9999999999999999999999999999
Q ss_pred EEcC-------CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC----CeeEEEEecCCCCeEEEEEecC
Q psy2685 78 WNYK-------QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS----RNCICVLTGHNHYVMCAQFHPT 146 (992)
Q Consensus 78 Wd~~-------t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t----~~~i~~l~~h~~~V~sl~fspd 146 (992)
||.. ..+....+.+|.+.|.+++|+|++++|++|+.|++|++||++. .+++..+.+|...|.+++|+|+
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 9984 3456778899999999999999999999999999999999943 3577889999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC--CCEEEEEeCC
Q psy2685 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK--SEVIVSNAED 224 (992)
Q Consensus 147 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd--g~~L~s~s~D 224 (992)
+++|++|+.|++|++||..... ..++..+.+|.+.|.++.|+|+ +..|++++.|
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDD------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTE------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCC------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 9999999999999999975421 0256778899999999999998 6789999999
Q ss_pred CeEEEEECCCC--------eeeeEeec-cCcccc------cCEEEEEeCCCeEEEEECCCCe--EEEE-eecCCC-CEEE
Q psy2685 225 KSIRLWDMTKR--------TCLNTFRR-EQERFW------SEVIVSNAEDKSIRLWDMTKRT--CLNT-FRREQE-RFWV 285 (992)
Q Consensus 225 g~I~vwdl~~~--------~~l~~~~~-~~~~~~------s~~l~sgs~Dg~I~vwd~~t~~--~v~~-l~~h~~-~V~~ 285 (992)
++|++||+.++ .+...+.. |...++ +..+++++.||.|++||..++. .... ...|.. .|++
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~ 300 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV 300 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEE
Confidence 99999998754 33444443 444332 2679999999999999998874 3333 356776 8999
Q ss_pred EEEeC--CCCEEEEEECCCEE-EEEec
Q psy2685 286 LVAHP--TLNLFAAGHDAGMV-VFKFE 309 (992)
Q Consensus 286 la~sp--dg~~Lasgsddgii-vw~l~ 309 (992)
++|+| ++++|++|+.|+.+ +|++.
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EEEecCCCceEEEEecCCCcEEEEEec
Confidence 99999 78999999887754 66543
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-35 Score=330.60 Aligned_cols=301 Identities=18% Similarity=0.339 Sum_probs=244.7
Q ss_pred cEEeecCCCCEEEEEE-----cC-CCCEEEEEEcCCeEEEEEcCC-------CeEEEEeccCCCCEEEEEEecCCCEEEE
Q psy2685 2 LTKFETKSARVKGLSF-----HP-KRPWILSSLHNGVIQLWDYRM-------NTLLEKFDEHEGPVRGICFHNQQPIFVS 68 (992)
Q Consensus 2 l~~l~~H~~~V~~iaf-----sp-dg~~Lasg~~dg~I~IWd~~~-------g~~~~~~~~h~~~V~~l~fspdg~~Las 68 (992)
...|++|.+.|++++| +| ++++|++|+.|++|++||+.+ +.....+.+|...|.+++|+|++.++++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4579999999999999 77 899999999999999999864 3567788999999999999999999999
Q ss_pred EECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe---cCCCCeEEEEEec
Q psy2685 69 GGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT---GHNHYVMCAQFHP 145 (992)
Q Consensus 69 gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~---~h~~~V~sl~fsp 145 (992)
|+.||+|++||+++++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+.. ....... +|...|.+++|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999974 3343333 6889999999999
Q ss_pred CC----------CEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC
Q psy2685 146 TD----------DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS 215 (992)
Q Consensus 146 dg----------~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg 215 (992)
++ +++++++.||+|++||... .....+.+|...|.+++|+|+|
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------------------~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNF---------------------------QIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEETTT---------------------------EEEEEEECCSSCEEEEEECTTS
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcCCC---------------------------ceeEEEcCccccceEEEECCCC
Confidence 87 7899999999999999532 2455678999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEE
Q psy2685 216 EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLF 295 (992)
Q Consensus 216 ~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~L 295 (992)
++|++++.|++|++||+..... ....+ .+...|.+++|+|+++++
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~----------------------------------~~~~~-~~~~~v~~v~~sp~~~~l 270 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTY----------------------------------PQREF-DAGSTINQIAFNPKLQWV 270 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSS----------------------------------CSEEE-ECSSCEEEEEECSSSCEE
T ss_pred CEEEEEcCCCeEEEEECCCCcc----------------------------------cceee-cCCCcEEEEEECCCCCEE
Confidence 9999999999999999843211 11112 233469999999999999
Q ss_pred EEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCcc
Q psy2685 296 AAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANN 375 (992)
Q Consensus 296 asgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~ 375 (992)
++|+++++.+|++.+..... +..+....... ..-..+|...+.+++|+|+|+.|++++.+
T Consensus 271 a~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~D--- 330 (343)
T 2xzm_R 271 AVGTDQGVKIFNLMTQSKAP----------------VCTIEAEPITK-AEGQKGKNPQCTSLAWNALGKKLFAGFTD--- 330 (343)
T ss_dssp EEEESSCEEEEESSSCCSCS----------------EEECCCCSGGG-BTTBCCSCCCEEEEEECSSSCCEEEEETT---
T ss_pred EEECCCCEEEEEeCCCCCCc----------------eEEeecCcchh-hhhhcCCCCceEEEEECCCCCeEEEecCC---
Confidence 99999888888776543221 00111000000 00002466789999999999999998765
Q ss_pred ccCCeEEEEEeCC
Q psy2685 376 FENSTYDLYMIPK 388 (992)
Q Consensus 376 ~~~g~i~i~~l~~ 388 (992)
|.+++|++..
T Consensus 331 ---g~v~~w~~~~ 340 (343)
T 2xzm_R 331 ---GVIRTFSFET 340 (343)
T ss_dssp ---SEEEEEEEEE
T ss_pred ---ceEEEEEEEc
Confidence 9999998753
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-35 Score=335.82 Aligned_cols=285 Identities=22% Similarity=0.441 Sum_probs=240.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCC------------------CEEEEEEecCCCEEE
Q psy2685 6 ETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEG------------------PVRGICFHNQQPIFV 67 (992)
Q Consensus 6 ~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~------------------~V~~l~fspdg~~La 67 (992)
.+|.+.|.+++|||+|++|++|+ ++.+++|++.+++.+..+..|.. .|++++|+|+|++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999986 78999999999998888765532 399999999999999
Q ss_pred EEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEec-C
Q psy2685 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP-T 146 (992)
Q Consensus 68 sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fsp-d 146 (992)
+|+.||.|++||+.+++....+.+|...|.+++|+|++.+|++|+.|++|++||++++++...+. +...+.+++|+| +
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999888776 567899999999 8
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCe
Q psy2685 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKS 226 (992)
Q Consensus 147 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~ 226 (992)
++++++|+.||+|++||+++... +..++. ......+|...|.+++|+|++++|++++.|++
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~-------------~~~~~~------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFL-------------VERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCE-------------EEEEC------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCEEEEEcCCCcEEEEECCCCcE-------------EEeecc------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 89999999999999999876431 111100 11223679999999999999999999999999
Q ss_pred EEEEECCCC------------eeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEE
Q psy2685 227 IRLWDMTKR------------TCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLV 287 (992)
Q Consensus 227 I~vwdl~~~------------~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la 287 (992)
|++||+.+. .+...+.+|...+. +.++++|+.|+.|++||..+++++..+.+|.+.|.+++
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~ 359 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE
Confidence 999999763 34455666665443 37899999999999999999999999999999999999
Q ss_pred EeC------CCCEEEEEECCCE-EEEEecCC
Q psy2685 288 AHP------TLNLFAAGHDAGM-VVFKFERE 311 (992)
Q Consensus 288 ~sp------dg~~Lasgsddgi-ivw~l~~~ 311 (992)
|+| ++++|++|+.|+. .+|++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 986 6889999988774 46766543
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-35 Score=337.75 Aligned_cols=337 Identities=16% Similarity=0.234 Sum_probs=272.7
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEEc----CCCe------EEEEecc----------CCCCEEEEEEecCCCE
Q psy2685 7 TKSARVKGLSFHPKRP-WILSSLHNGVIQLWDY----RMNT------LLEKFDE----------HEGPVRGICFHNQQPI 65 (992)
Q Consensus 7 ~H~~~V~~iafspdg~-~Lasg~~dg~I~IWd~----~~g~------~~~~~~~----------h~~~V~~l~fspdg~~ 65 (992)
.|.++|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |.+.|++++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 4559999999999999 9999999999999999 8887 4555544 6789999999999999
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCC--------
Q psy2685 66 FVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHY-------- 137 (992)
Q Consensus 66 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~-------- 137 (992)
|++|+.||.|++|| .+++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 99999999999999 678888999999999999999999999999999999999999999999999888777
Q ss_pred -------eEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEE
Q psy2685 138 -------VMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVL 210 (992)
Q Consensus 138 -------V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~ 210 (992)
+.+++|+|++ .+++++.||.|++||+.... ....+.+|...|.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~--------------------------~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT--------------------------PTGKLIGHHGPISVLE 254 (425)
T ss_dssp ----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS--------------------------CSEEECCCSSCEEEEE
T ss_pred ccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc--------------------------eeeeeccCCCceEEEE
Confidence 9999999975 68899999999999987642 3345668999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCccccc------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEE
Q psy2685 211 FHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS------EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW 284 (992)
Q Consensus 211 fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s------~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~ 284 (992)
|+|++++|++++.|+.|++||+.+++.+..+..+...+.+ ..+++++.|+.|++||+.+++.+..+..|...+.
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 9999999999999999999999999888888776655432 3899999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCC-EEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCc--cceeEEEcc
Q psy2685 285 VLVAHPTLNLFAAGHDAG-MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI--PAHSISYNA 361 (992)
Q Consensus 285 ~la~spdg~~Lasgsddg-iivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~--~I~~lafsp 361 (992)
+++|+|++++|++|+.++ +.+|++.......... ....+. ++... ....+..+. .|.. .|.+++|+|
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~----~~~~~~---~~~~~--~~~~~~~~~-~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL----YGNRDG---ILNPL--PIPLYASYQ-SSQDNDYIFDLSWNC 404 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------CE--ECCEEEEEC-CTTCCCCEEEEEECT
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeee----eccccc---ccCcc--cchhhhhhc-CcccCCceEEEEccC
Confidence 999999999999998776 5688876544221100 000011 11110 011233343 3444 899999999
Q ss_pred CCCEEEEEecCCccccCCeEEEEEeC
Q psy2685 362 TEHSILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 362 dg~~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
++++|++++.+ |.+.+|+++
T Consensus 405 ~~~~l~~~~~d------g~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSL------QEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESS------SCCEEEECC
T ss_pred CCceEEEEecC------ceEEEEeec
Confidence 99999988765 899999875
No 26
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=365.87 Aligned_cols=407 Identities=11% Similarity=0.154 Sum_probs=301.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~ 83 (992)
...+|.+.|++++|+|++++||+|+.||.|+||+..+++....+ .|..+|.+++|+| |++|++++.|++|++||+.++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34689999999999999999999999999999998888776665 4788999999999 889999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE-----------EEEecCCCCeEEEEEecCC-CEEE
Q psy2685 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI-----------CVLTGHNHYVMCAQFHPTD-DIVV 151 (992)
Q Consensus 84 ~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i-----------~~l~~h~~~V~sl~fspdg-~~L~ 151 (992)
+++..+. |.+.|++++|+|++.++++|+.||+|++||++++++. ..+.+|.+.|++++|+|++ ..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 9988885 7789999999999999999999999999999988764 1235689999999999964 7899
Q ss_pred EEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCC--c---ceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCe
Q psy2685 152 SASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS--K---AWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKS 226 (992)
Q Consensus 152 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~--~---~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~ 226 (992)
+|+.||+| +||+++.+... .+..... . .........|...|.+++|+|+|.+|++++.|++
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQ-------------SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EECSSCEE-EEETTTTEEEE-------------EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEeCCCcE-EEECCCCceEE-------------EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 99999999 99998653211 1110000 0 0000011245678999999999999999999999
Q ss_pred EEEEECCCCeeeeE--ee---cc-------------Cccc----c--------cCEEEEEeCC-----CeEEEEECC---
Q psy2685 227 IRLWDMTKRTCLNT--FR---RE-------------QERF----W--------SEVIVSNAED-----KSIRLWDMT--- 268 (992)
Q Consensus 227 I~vwdl~~~~~l~~--~~---~~-------------~~~~----~--------s~~l~sgs~D-----g~I~vwd~~--- 268 (992)
|++||+.+++++.. +. .+ ...+ | ..++++|+.| ..+.+|++.
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 99999999887653 21 11 1111 2 1356777665 378899842
Q ss_pred ---------------CCeEEEEee-cCCCCEEEEEEeC----------CCCEEEEEECCC-EEEEEecCCcceE------
Q psy2685 269 ---------------KRTCLNTFR-REQERFWVLVAHP----------TLNLFAAGHDAG-MVVFKFERERPAY------ 315 (992)
Q Consensus 269 ---------------t~~~v~~l~-~h~~~V~~la~sp----------dg~~Lasgsddg-iivw~l~~~~~~~------ 315 (992)
+++....+. .+...+..+.+.| +...+++++.++ +.+|++.++.+..
T Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~ 394 (902)
T 2oaj_A 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP 394 (902)
T ss_dssp CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC
T ss_pred CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC
Confidence 223344443 4567888888866 233566666544 7789875442110
Q ss_pred -------------------------------------------------EeeccEEEEE-eCCeEEEEEeeCCCce--EE
Q psy2685 316 -------------------------------------------------TVHNNVMYYV-KERFLHRLDLTNSKDS--VV 343 (992)
Q Consensus 316 -------------------------------------------------~~~~~~v~~~-~~~~i~i~dl~~~~~~--~v 343 (992)
...++.++.+ .|++|++||+.++... ..
T Consensus 395 ~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 395 QNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 0112233333 6899999999876432 12
Q ss_pred EEee------cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCcc----------c---------------
Q psy2685 344 MQLR------GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES----------E--------------- 392 (992)
Q Consensus 344 ~~l~------~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~----------~--------------- 392 (992)
+... .+|...|++++|+|||++||+++.+ |++++|++..... .
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D------gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIET------GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT------SCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecC------cEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence 2221 2678899999999999999999875 9999999865410 0
Q ss_pred ------------------cceeccCccccceEEEEecCCeEEEEEcCCeEEEEEcCCcc
Q psy2685 393 ------------------RKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEY 433 (992)
Q Consensus 393 ------------------~~~~~~~~~~~~~s~~w~~~~~~av~~~~g~I~i~dl~~~~ 433 (992)
.......+.+.+.++.|++++.+|++..+++|++||+++..
T Consensus 549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTE
T ss_pred ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCe
Confidence 01233456778889999999977778889999999987643
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=322.74 Aligned_cols=286 Identities=16% Similarity=0.289 Sum_probs=249.3
Q ss_pred CeEEEEeccCCCCEEEEEEecC----CCEEEEEECCCeEEEEEcCCCeE--EEEEccCCCCEEEEEEecCCCEEEEEECC
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQ----QPIFVSGGDDYKIKVWNYKQRKC--IFTLLGHLDYIRTTFFHHEYPWILSASDD 114 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspd----g~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~i~fspd~~~L~sgs~D 114 (992)
+.......+|.+.|.+++|+|+ +..|++|+.|++|+|||+.+++. ...+.+|...|.+++|+++++.+++|+.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 3445667789999999999985 56899999999999999987764 45688999999999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 115 QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 115 g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
++|++||+.+++++..+..|...+.+++|+|+++++++|+.||.|++||+....
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-------------------------- 155 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-------------------------- 155 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--------------------------
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--------------------------
Confidence 999999999999999999999999999999999999999999999999987642
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEEC
Q psy2685 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDM 267 (992)
Q Consensus 195 ~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~ 267 (992)
....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+...+. +.++++++.|+.|++||+
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence 4455677888999999999999999999999999999999999999988776553 378999999999999999
Q ss_pred CCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEee
Q psy2685 268 TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR 347 (992)
Q Consensus 268 ~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~ 347 (992)
.+++.+.++.+|...|.+++|+|++.+|++|+.|+. +++||+.+++ .+..+
T Consensus 236 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~--------------------------v~iwd~~~~~--~~~~~- 286 (321)
T 3ow8_A 236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS--------------------------VKVWDVGTRT--CVHTF- 286 (321)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--------------------------EEEEETTTTE--EEEEE-
T ss_pred CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc--------------------------EEEEeCCCCE--EEEEE-
Confidence 999999999999999999999999999999987654 3457765443 23333
Q ss_pred cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeC
Q psy2685 348 GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 348 ~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
.+|...|++++|+|+|..|++++.+ |.+++|+.+
T Consensus 287 ~~h~~~v~~v~~s~~g~~l~s~~~d------~~i~vwd~p 320 (321)
T 3ow8_A 287 FDHQDQVWGVKYNGNGSKIVSVGDD------QEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETT------CCEEEEECC
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEeCC
Confidence 3578899999999999999998865 999999865
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.3e-34 Score=320.01 Aligned_cols=283 Identities=19% Similarity=0.320 Sum_probs=247.7
Q ss_pred CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vw 120 (992)
.+...++.+|.++|.+++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|+++++++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----eeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEE
Q psy2685 121 NWQSR----NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEV 196 (992)
Q Consensus 121 dl~t~----~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i 196 (992)
|+.++ +....+.+|...|.++.|++++. +++++.|++|++||+.+.. ..
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~--------------------------~~ 177 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ--------------------------QT 177 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE--------------------------EE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc--------------------------EE
Confidence 99875 45677889999999999998765 8999999999999987642 56
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCC
Q psy2685 197 DIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTK 269 (992)
Q Consensus 197 ~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t 269 (992)
..+.+|.+.|.+++|+|++.++++|+.|++|++||+.++.++.++..|...+. +..+++|+.|++|++||+.+
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 67889999999999999999999999999999999999999999988876653 37999999999999999999
Q ss_pred CeEEEEeec--CCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEee
Q psy2685 270 RTCLNTFRR--EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR 347 (992)
Q Consensus 270 ~~~v~~l~~--h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~ 347 (992)
++.+..+.. +...|.+++|+|+|++|++|+.++.+ ++||+.+++.. ..+
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i--------------------------~vwd~~~~~~~--~~~- 308 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC--------------------------NVWDALKADRA--GVL- 308 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE--------------------------EEEETTTCCEE--EEE-
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE--------------------------EEEEcccCcEe--eEe-
Confidence 988877753 33579999999999999999887643 45776554432 233
Q ss_pred cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEE
Q psy2685 348 GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 348 ~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~ 385 (992)
.+|..+|.+++|+|+|.+|++++.+ |.+++|+
T Consensus 309 ~~h~~~v~~~~~s~dg~~l~s~s~D------~~i~iWd 340 (340)
T 1got_B 309 AGHDNRVSCLGVTDDGMAVATGSWD------SFLKIWN 340 (340)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETT------SCEEEEC
T ss_pred ecCCCcEEEEEEcCCCCEEEEEcCC------ccEEecC
Confidence 3678899999999999999999865 8999994
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=331.03 Aligned_cols=279 Identities=15% Similarity=0.209 Sum_probs=224.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-----------eEEEEeccCCCCEEEEEEecCCCEEEEEECCCe
Q psy2685 6 ETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN-----------TLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK 74 (992)
Q Consensus 6 ~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g-----------~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~ 74 (992)
..|...|.+++|+|||++|++++ |+++++||.... ........|...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35677899999999999988877 778888873210 0111112356789999999986 6889999999
Q ss_pred EEEEEcCCCeEEE----EEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCC-CE
Q psy2685 75 IKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DI 149 (992)
Q Consensus 75 I~VWd~~t~~~~~----~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg-~~ 149 (992)
|+|||+.+++... ...+|.+.|++++|+|++++|++|+.|++|++||+++++++.++.+|...|.+++|+|++ .+
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 9999999886443 345899999999999999999999999999999999999999999999999999999998 57
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK-SEVIVSNAEDKSIR 228 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~ 228 (992)
+++|+.|++|++||+++.+.. .......|...+.+++|+|+ +.+|++|+.|++|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~------------------------~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPA------------------------SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCE------------------------EECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eeeecccccccccccccccee------------------------eeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 899999999999999764321 11112345667999999995 57899999999999
Q ss_pred EEECCCCeeeeEeeccCccccc--------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCC-EEEEEE
Q psy2685 229 LWDMTKRTCLNTFRREQERFWS--------EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLN-LFAAGH 299 (992)
Q Consensus 229 vwdl~~~~~l~~~~~~~~~~~s--------~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~-~Lasgs 299 (992)
+||+.+++++.++..|...+.+ .++++|+.|++|++||+.+++.+ .+.+|.+.|++++|+|+++ +|++|+
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence 9999999999999988876542 57999999999999999998765 5689999999999999986 677887
Q ss_pred CCC-EEEEEecCC
Q psy2685 300 DAG-MVVFKFERE 311 (992)
Q Consensus 300 ddg-iivw~l~~~ 311 (992)
.|+ +.+|++..+
T Consensus 320 ~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 320 WDHQVVHHVVPTE 332 (344)
T ss_dssp TTSCEEEEECCC-
T ss_pred CCCeEEEEECCCC
Confidence 655 446665443
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.8e-34 Score=318.09 Aligned_cols=282 Identities=20% Similarity=0.368 Sum_probs=245.3
Q ss_pred EEeecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEEcCCC-----eEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEE
Q psy2685 3 TKFETKSARVKGLSFHPK-RPWILSSLHNGVIQLWDYRMN-----TLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIK 76 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspd-g~~Lasg~~dg~I~IWd~~~g-----~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 76 (992)
.+|+||++.|++++|+|+ +++|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 479999999999999997 579999999999999998654 35678899999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE-EEEecCCCCeEEEEEecCC--CEEEEE
Q psy2685 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI-CVLTGHNHYVMCAQFHPTD--DIVVSA 153 (992)
Q Consensus 77 VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i-~~l~~h~~~V~sl~fspdg--~~L~sg 153 (992)
+|+...+........+...+....++++++.+++|+.|+.+++||....... ....+|...+.+++|++++ ..++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 9999999999888899999999999999999999999999999998765443 3456789999999999875 578999
Q ss_pred ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy2685 154 SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT 233 (992)
Q Consensus 154 s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~ 233 (992)
+.|++|++||+++.. ....+.+|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus 192 ~~d~~i~i~d~~~~~--------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 192 GWDKLVKVWNLANCK--------------------------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp ETTSCEEEEETTTTE--------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cCCCEEEEEECCCCc--------------------------eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 999999999987642 566778999999999999999999999999999999999
Q ss_pred CCeeeeEeeccCccc---c--cCEEEEEeCCCeEEEEECCCCeEEEEee---------cCCCCEEEEEEeCCCCEEEEEE
Q psy2685 234 KRTCLNTFRREQERF---W--SEVIVSNAEDKSIRLWDMTKRTCLNTFR---------REQERFWVLVAHPTLNLFAAGH 299 (992)
Q Consensus 234 ~~~~l~~~~~~~~~~---~--s~~l~sgs~Dg~I~vwd~~t~~~v~~l~---------~h~~~V~~la~spdg~~Lasgs 299 (992)
+++++..+..+.... + ...+++++.|+.|++||+.++..+..+. .|...|++++|+|+|++|++|+
T Consensus 246 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 246 EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp TTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred cCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 999988887654321 1 2677888899999999999988776654 5778899999999999999998
Q ss_pred CCCEE-EEEecC
Q psy2685 300 DAGMV-VFKFER 310 (992)
Q Consensus 300 ddgii-vw~l~~ 310 (992)
.||.+ +|++.+
T Consensus 326 ~Dg~v~iW~~~t 337 (340)
T 4aow_A 326 TDNLVRVWQVTI 337 (340)
T ss_dssp TTSCEEEEEEEC
T ss_pred CCCEEEEEeCCC
Confidence 77643 555543
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-35 Score=335.62 Aligned_cols=280 Identities=13% Similarity=0.224 Sum_probs=228.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEEc------CCeEEEEEcCCCeEE----EEeccCCCCEEEEEEecCCCEEEEEECCCe
Q psy2685 5 FETKSARVKGLSFHPKRPWILSSLH------NGVIQLWDYRMNTLL----EKFDEHEGPVRGICFHNQQPIFVSGGDDYK 74 (992)
Q Consensus 5 l~~H~~~V~~iafspdg~~Lasg~~------dg~I~IWd~~~g~~~----~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~ 74 (992)
..+|...|.+++|||||++|++|+. |+.|++|+..++... .....|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3579999999999999999999997 778999998776543 23346889999999999985 567888999
Q ss_pred EEEEEcCCCeEEE----EEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCC-E
Q psy2685 75 IKVWNYKQRKCIF----TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDD-I 149 (992)
Q Consensus 75 I~VWd~~t~~~~~----~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~-~ 149 (992)
|+|||+.+++... ...+|.+.|++++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++. .
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 9999998876542 3458999999999999999999999999999999999999999999999999999999884 7
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK-SEVIVSNAEDKSIR 228 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~ 228 (992)
+++++.||+|++||+++.+... ......|...+.+++|+|+ +.+|++|+.|+.|+
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~------------------------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPAT------------------------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBC------------------------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred eeeeccCCceEEEECCCCceee------------------------eeeeccccccccchhhhhcccceEEEeeccccee
Confidence 8999999999999997654221 1123456778999999997 56899999999999
Q ss_pred EEECCCCeeeeEeeccCccccc--------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeC-CCCEEEEEE
Q psy2685 229 LWDMTKRTCLNTFRREQERFWS--------EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHP-TLNLFAAGH 299 (992)
Q Consensus 229 vwdl~~~~~l~~~~~~~~~~~s--------~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~sp-dg~~Lasgs 299 (992)
+||+.+++++.++..+...+.+ .++++|+.|++|++||+.+++++..+ +|.+.|++++|+| ++.+|++|+
T Consensus 253 ~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp EEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEc
Confidence 9999999999888887765432 57999999999999999999887665 7999999999999 799999988
Q ss_pred CCC-EEEEEecC
Q psy2685 300 DAG-MVVFKFER 310 (992)
Q Consensus 300 ddg-iivw~l~~ 310 (992)
.|+ +.+|++..
T Consensus 332 ~Dg~v~iW~~~~ 343 (357)
T 4g56_B 332 WDHKVLHHHLPS 343 (357)
T ss_dssp TTSCEEEEECC-
T ss_pred CCCeEEEEECCC
Confidence 766 44666543
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=357.83 Aligned_cols=410 Identities=10% Similarity=0.095 Sum_probs=295.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCI 86 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~ 86 (992)
.|..+|.+++|+| +++|++++.|++|++||+.+++.+..+. |.+.|++++|+|+++++++|+.||.|++||+.++++.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999988886 7789999999999999999999999999999988764
Q ss_pred -----------EEEccCCCCEEEEEEecC-CCEEEEEECCCeEEEEECCCCeeEEEEecC------------------CC
Q psy2685 87 -----------FTLLGHLDYIRTTFFHHE-YPWILSASDDQTIRIWNWQSRNCICVLTGH------------------NH 136 (992)
Q Consensus 87 -----------~~l~~h~~~V~~i~fspd-~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h------------------~~ 136 (992)
..+.+|.++|.+++|+|+ +..+++|+.||.| +||+++++++..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 123568899999999996 4689999999999 9999999999888766 47
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEEECCCCccccc--------c-------------C-C-------------------
Q psy2685 137 YVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV--------A-------------P-G------------------- 175 (992)
Q Consensus 137 ~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~--------~-------------~-~------------------- 175 (992)
.|.+++|+|+|++|++|+.||+|++||+++.+.... . . .
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999976543210 0 0 0
Q ss_pred cccCC-----CeEEEEEcc------------------CCcceEEEEEe-ccCCCeEEEEEcC----------CCCEEEEE
Q psy2685 176 MGADD-----RQIKLWRMN------------------DSKAWEVDIFR-GHYNNVSCVLFHP----------KSEVIVSN 221 (992)
Q Consensus 176 ~~~~d-----~~I~iwd~~------------------~~~~~~i~~l~-~h~~~V~~v~fsp----------dg~~L~s~ 221 (992)
+++.+ ..+.+|++. .++ ....+. +|.+.|.++.+.| ++..++++
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK--QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS--EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc--ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 11111 256666632 111 122222 4667888888865 34478899
Q ss_pred eCCCeEEEEECCCCeeeeE-----------------------------------------eeccCccc-------ccCEE
Q psy2685 222 AEDKSIRLWDMTKRTCLNT-----------------------------------------FRREQERF-------WSEVI 253 (992)
Q Consensus 222 s~Dg~I~vwdl~~~~~l~~-----------------------------------------~~~~~~~~-------~s~~l 253 (992)
+.|+.|++||+.++..... +.++.... .+..+
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 9999999999977643221 11111111 23789
Q ss_pred EEEeCCCeEEEEECCCCeEE----EEe--e-----cCCCCEEEEEEeCCCCEEEEEECCC-EEEEEecCCcceEE----e
Q psy2685 254 VSNAEDKSIRLWDMTKRTCL----NTF--R-----REQERFWVLVAHPTLNLFAAGHDAG-MVVFKFERERPAYT----V 317 (992)
Q Consensus 254 ~sgs~Dg~I~vwd~~t~~~v----~~l--~-----~h~~~V~~la~spdg~~Lasgsddg-iivw~l~~~~~~~~----~ 317 (992)
++|+.|++|++||+.++... ... . +|...|++++|+|++++||+|+.|+ +.+|++.+.+..-. .
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 99999999999999887421 111 1 7888999999999999999999777 55898876532100 0
Q ss_pred ecc-EEEE----EeCCeEEEEEeeCCC-------ceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEE
Q psy2685 318 HNN-VMYY----VKERFLHRLDLTNSK-------DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 318 ~~~-~v~~----~~~~~i~i~dl~~~~-------~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~ 385 (992)
... .+-+ +....-...++.... ..++..+ .+|...|++++||||| +||+++.+ +++++|+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~h~~~V~svafSpdG-~lAsgs~D------~tv~lwd 602 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HANKGKTSAINNSNIG-FVGIAYAA------GSLMLID 602 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CCCSCSEEEEEECBTS-EEEEEETT------SEEEEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-EcCCCcEEEEEecCCc-EEEEEeCC------CcEEEEE
Confidence 000 0000 000000001111110 0123333 3588999999999999 99998865 9999999
Q ss_pred eCCCcccc---ceecc-CccccceEEEEe-----cCC----eEEEEEcCCeEEEEEc
Q psy2685 386 IPKEESER---KEVAD-GKRSTGISAVWV-----ARN----RFAVLDRNHTILIKNL 429 (992)
Q Consensus 386 l~~~~~~~---~~~~~-~~~~~~~s~~w~-----~~~----~~av~~~~g~I~i~dl 429 (992)
+....... ..... ++.+.+.++.|+ +|+ .++.+..+++|++||+
T Consensus 603 ~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 603 RRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 76543211 11222 566778999999 774 6666777999999998
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-33 Score=314.94 Aligned_cols=282 Identities=17% Similarity=0.286 Sum_probs=252.0
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
.+|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECC-----CeEEEEECCCCe-----------eEEEEecCCC--CeEEEEEe
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDD-----QTIRIWNWQSRN-----------CICVLTGHNH--YVMCAQFH 144 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D-----g~I~vwdl~t~~-----------~i~~l~~h~~--~V~sl~fs 144 (992)
++.+..+. |...+.+++|+|+++++++++.+ |.|.+||+.++. ....+..|.. .+.+++|+
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 99988887 88999999999999999999999 999999987653 3455566666 99999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q psy2685 145 PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED 224 (992)
Q Consensus 145 pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~D 224 (992)
|+++.+++++.||.|++||+++.. .....+..|...|.+++|+|++++|++++.|
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSNNY-------------------------EYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTTTT-------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCEEEEEcCCCEEEEEECCCCc-------------------------EeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 999999999999999999987521 2566778899999999999999999999999
Q ss_pred CeEEEEECCCCeeeeEeeccCccc------ccCEEEEEeCCC--------------eEEEEECCCCeEEEEeecCCCCEE
Q psy2685 225 KSIRLWDMTKRTCLNTFRREQERF------WSEVIVSNAEDK--------------SIRLWDMTKRTCLNTFRREQERFW 284 (992)
Q Consensus 225 g~I~vwdl~~~~~l~~~~~~~~~~------~s~~l~sgs~Dg--------------~I~vwd~~t~~~v~~l~~h~~~V~ 284 (992)
+.|++||+.+++.+..+....... .+..+++++.++ .+++||..+++.+..+.+|...|.
T Consensus 240 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 319 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN 319 (369)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE
Confidence 999999999999888877433221 147888888888 899999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCEE-EEEecC
Q psy2685 285 VLVAHPTLNLFAAGHDAGMV-VFKFER 310 (992)
Q Consensus 285 ~la~spdg~~Lasgsddgii-vw~l~~ 310 (992)
+++|+|++++|++|+.||.+ +|++..
T Consensus 320 ~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 320 TVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999999999877644 666544
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.7e-34 Score=316.46 Aligned_cols=315 Identities=15% Similarity=0.202 Sum_probs=263.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE--
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKC-- 85 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~-- 85 (992)
|.++|.+++|+|||++++++..++.+..|+...........+|.++|.+++|+|+++++++++ ||.|++||+.+++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456899999999999999988888777776555444444457999999999999999999998 99999999987642
Q ss_pred -EEEEc--cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCe--eEEEEecCCCCeEEEEEecCCCEEEEEECCCeEE
Q psy2685 86 -IFTLL--GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN--CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160 (992)
Q Consensus 86 -~~~l~--~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~--~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~ 160 (992)
...+. +|...|.+++|+|+++++++++.||.|++||+++++ ....+..|...|.+++|+|+++.+++++.||.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 23333 789999999999999999999999999999999877 6677888999999999999999999999999999
Q ss_pred EEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE
Q psy2685 161 VWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNT 240 (992)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~ 240 (992)
+||+++.+ ....+.+|...+.++.|+|++++|++++.|+.|++||+.+++.+..
T Consensus 167 ~~d~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 167 VWDLHNQT--------------------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEETTTTE--------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEeCCCCc--------------------------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee
Confidence 99987632 4566778999999999999999999999999999999999988877
Q ss_pred eeccCccc------ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcce
Q psy2685 241 FRREQERF------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPA 314 (992)
Q Consensus 241 ~~~~~~~~------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~ 314 (992)
+....... .+..+++++.++.|++||+.+++.. .+..|...+.+++|+|++++|++++.++.+
T Consensus 221 ~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i---------- 289 (337)
T 1gxr_A 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLL---------- 289 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEE----------
T ss_pred ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcE----------
Confidence 65433211 2478999999999999999988754 567889999999999999999999876643
Q ss_pred EEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEe
Q psy2685 315 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMI 386 (992)
Q Consensus 315 ~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l 386 (992)
++||+.+++.. .. ..+...+.+++|+|+++++++++.+ |.+++|++
T Consensus 290 ----------------~~~~~~~~~~~--~~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~ 335 (337)
T 1gxr_A 290 ----------------NAWRTPYGASI--FQ--SKESSSVLSCDISVDDKYIVTGSGD------KKATVYEV 335 (337)
T ss_dssp ----------------EEEETTTCCEE--EE--EECSSCEEEEEECTTSCEEEEEETT------SCEEEEEE
T ss_pred ----------------EEEECCCCeEE--EE--ecCCCcEEEEEECCCCCEEEEecCC------CeEEEEEE
Confidence 34666554433 11 1356789999999999999998865 89999986
No 35
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.9e-33 Score=323.76 Aligned_cols=321 Identities=26% Similarity=0.451 Sum_probs=274.6
Q ss_pred EEeecCCCCE-EEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 3 TKFETKSARV-KGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 3 ~~l~~H~~~V-~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+.+|.+.| ++ +++++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+ ++.+++|+.||+|++||+.
T Consensus 112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 5689999875 54 55568999999999999999999999999999999999999998 5699999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
+++.+..+.+|...|.++.|+ ++.+++|+.||.|++||+.+++++..+.+|...|.+++| +++.+++|+.||.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999996 467999999999999999999999999999999999999 6789999999999999
Q ss_pred EECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 162 wd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
||+++.. ....+.+|...|.++.| ++.++++++.|+.|++||+.+++.+..+
T Consensus 264 wd~~~~~--------------------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 264 WDPETET--------------------------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp EEGGGTE--------------------------EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EECCCCc--------------------------EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 9986532 56677889999999999 7889999999999999999999999988
Q ss_pred eccCcccc-----cCEEEEEeCCCeEEEEECCCCeEEEEeec---CCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcc
Q psy2685 242 RREQERFW-----SEVIVSNAEDKSIRLWDMTKRTCLNTFRR---EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP 313 (992)
Q Consensus 242 ~~~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~---h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~ 313 (992)
..+..... +..+++++.||.|++||+.+++.+..+.. |...|.+++|+ +++|++|+.+|.+
T Consensus 316 ~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v--------- 384 (445)
T 2ovr_B 316 TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV--------- 384 (445)
T ss_dssp CCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE---------
T ss_pred cCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE---------
Confidence 87765543 48999999999999999999999999876 78889999995 5789998876643
Q ss_pred eEEeeccEEEEEeCCeEEEEEeeCCCceEEEEe-e-cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 314 AYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQL-R-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 314 ~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l-~-~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
++||+.+++....... . ..+...|++++|+|++..+++++.+ ...+..+.+|++...
T Consensus 385 -----------------~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d--g~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 385 -----------------KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN--GTEETKLLVLDFDVD 443 (445)
T ss_dssp -----------------EEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS--SSSCCEEEEEECCCC
T ss_pred -----------------EEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC--CCCccEEEEEECCCC
Confidence 4466665554333321 1 2467889999999999999999876 112334888887653
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.3e-33 Score=314.43 Aligned_cols=283 Identities=17% Similarity=0.246 Sum_probs=246.1
Q ss_pred eEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q psy2685 42 TLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121 (992)
Q Consensus 42 ~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwd 121 (992)
+...++.+|.++|.+++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------eeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceE
Q psy2685 122 WQSR------NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE 195 (992)
Q Consensus 122 l~t~------~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~ 195 (992)
+... .....+.+|...|.+++|+|++..+++++.|++|++||+.+.+ .
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~--------------------------~ 188 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ--------------------------L 188 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--------------------------E
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--------------------------E
Confidence 8643 3456777899999999999999999999999999999987642 5
Q ss_pred EEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEE
Q psy2685 196 VDIFRGHYNNVSCVLFHP--KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWD 266 (992)
Q Consensus 196 i~~l~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd 266 (992)
+..+.+|...|.++.|+| ++++|++|+.|++|++||+.+++++..+..|...+. +..+++++.|++|++||
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 667889999999999988 468999999999999999999999999988876553 37999999999999999
Q ss_pred CCCCeEEEEeecC--CCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEE
Q psy2685 267 MTKRTCLNTFRRE--QERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVM 344 (992)
Q Consensus 267 ~~t~~~v~~l~~h--~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~ 344 (992)
+++++.+..+..+ ...+.+++|+|++++|++|+.++. +++||+.+++.. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~--------------------------i~vwd~~~~~~~--~ 320 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT--------------------------INVWDVLKGSRV--S 320 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC--------------------------EEEEETTTCSEE--E
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc--------------------------EEEEECCCCceE--E
Confidence 9999887777543 347899999999999999987653 345676555432 2
Q ss_pred EeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEE
Q psy2685 345 QLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 345 ~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~ 385 (992)
.+ .+|...|.+++|+|+|++|++++.+ |++++|+
T Consensus 321 ~l-~~h~~~v~~l~~spdg~~l~sgs~D------~~v~vW~ 354 (354)
T 2pbi_B 321 IL-FGHENRVSTLRVSPDGTAFCSGSWD------HTLRVWA 354 (354)
T ss_dssp EE-CCCSSCEEEEEECTTSSCEEEEETT------SEEEEEC
T ss_pred EE-ECCCCcEEEEEECCCCCEEEEEcCC------CCEEecC
Confidence 33 3678899999999999999999875 8999984
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-32 Score=321.82 Aligned_cols=305 Identities=22% Similarity=0.407 Sum_probs=259.1
Q ss_pred EEeecCCCCE-EEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 3 TKFETKSARV-KGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 3 ~~l~~H~~~V-~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+.+|.+.| +++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .+++|+.||+|++||+.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 4789998885 66666 46799999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEe--cCCCEEEEEECCCeEEEEECCCCee-----------------------EEEEecCCC
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRIWNWQSRNC-----------------------ICVLTGHNH 136 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fs--pd~~~L~sgs~Dg~I~vwdl~t~~~-----------------------i~~l~~h~~ 136 (992)
+++.+..+.+|.+.|.+++|+ ++++++++|+.||.|++||++++.. +..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999998 5778999999999999999987652 556788999
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC
Q psy2685 137 YVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE 216 (992)
Q Consensus 137 ~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~ 216 (992)
.|.++ +++++++++|+.||+|++||+.+.+ .+..+.+|...|.++.|+|+++
T Consensus 272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK--------------------------CLYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTTE--------------------------EEEEECCCSSCEEEEEEETTTT
T ss_pred eEEEE--cCCCCEEEEEeCCCeEEEEECCCCc--------------------------EEEEecCCCCCEEEEEEcCCCC
Confidence 99887 5678999999999999999987542 5667789999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-----cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCC
Q psy2685 217 VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-----SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT 291 (992)
Q Consensus 217 ~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spd 291 (992)
++++++.|+.|++||+.+++++..+..|...+. +..+++++.||.|++||+.++...... .+...+..++|+|+
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~ 402 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVS 402 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeC
Confidence 999999999999999999999999988876654 389999999999999999998876655 35667788899999
Q ss_pred CCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEe
Q psy2685 292 LNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTT 370 (992)
Q Consensus 292 g~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~ 370 (992)
++++++|+++.+.+ ||+.+++. +......+...|++++|+ +..+++++
T Consensus 403 ~~~l~~~~dg~i~i---------------------------wd~~~g~~--~~~~~~~~~~~v~~v~~~--~~~l~~~~ 450 (464)
T 3v7d_B 403 DNILVSGSENQFNI---------------------------YNLRSGKL--VHANILKDADQIWSVNFK--GKTLVAAV 450 (464)
T ss_dssp SSEEEEEETTEEEE---------------------------EETTTCCE--EESCTTTTCSEEEEEEEE--TTEEEEEE
T ss_pred CCEEEEecCCeEEE---------------------------EECCCCcE--EehhhccCCCcEEEEEec--CCEEEEEE
Confidence 99999988544444 55554442 222223467889999997 45555554
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=309.40 Aligned_cols=293 Identities=16% Similarity=0.314 Sum_probs=227.4
Q ss_pred CCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC--eEEEEE-cc-CCCCEEEEEEecCCCEEEEEECC
Q psy2685 39 RMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR--KCIFTL-LG-HLDYIRTTFFHHEYPWILSASDD 114 (992)
Q Consensus 39 ~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l-~~-h~~~V~~i~fspd~~~L~sgs~D 114 (992)
.+.+.+..+.+|.++|.+++|+|+ +|++|+.||+|++||+.++ +....+ .+ |.+.|.+++|+|++++|++|+.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345678889999999999999988 9999999999999999875 455566 44 99999999999999999999999
Q ss_pred CeEEEEECCC-------CeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEE
Q psy2685 115 QTIRIWNWQS-------RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWR 187 (992)
Q Consensus 115 g~I~vwdl~t-------~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd 187 (992)
++|++||++. .+++..+.+|...|.+++|+|++++|++|+.|++|++||++....
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~------------------ 141 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE------------------ 141 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC------------------
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC------------------
Confidence 9999999853 456788899999999999999999999999999999999853210
Q ss_pred ccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeeEeeccCccccc---------CEEEEE
Q psy2685 188 MNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR--TCLNTFRREQERFWS---------EVIVSN 256 (992)
Q Consensus 188 ~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~--~~l~~~~~~~~~~~s---------~~l~sg 256 (992)
....+..+.+|...|.+++|+|++.+|++++.|++|++||..++ +++..+.+|...+++ ..++++
T Consensus 142 ----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 142 ----EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp ----CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred ----CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 00256678899999999999999999999999999999998876 677888888766542 479999
Q ss_pred eCCCeEEEEECCCC--------eEEEEeec-CCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeC
Q psy2685 257 AEDKSIRLWDMTKR--------TCLNTFRR-EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKE 327 (992)
Q Consensus 257 s~Dg~I~vwd~~t~--------~~v~~l~~-h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~ 327 (992)
+.|++|++||+.++ .+...+.. |...|.+++|+|++ +|++|+.|+.+
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v----------------------- 273 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVL----------------------- 273 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCE-----------------------
T ss_pred eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEE-----------------------
Confidence 99999999998754 44555554 88899999999776 66776655532
Q ss_pred CeEEEEEeeCCCceEEEEeecCCCc-cceeEEEcc--CCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 328 RFLHRLDLTNSKDSVVMQLRGGGRI-PAHSISYNA--TEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 328 ~~i~i~dl~~~~~~~v~~l~~~~~~-~I~~lafsp--dg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
++|+..+++..........|.. .|.+++|+| +++.|++++.+ |++++|++..
T Consensus 274 ---~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D------g~v~~W~~~~ 328 (330)
T 2hes_X 274 ---AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD------GIVNFWSLEK 328 (330)
T ss_dssp ---EEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT------SEEEEEEC--
T ss_pred ---EEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC------CcEEEEEecc
Confidence 3344443321222222234555 899999999 78999988765 9999998754
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-33 Score=304.24 Aligned_cols=277 Identities=21% Similarity=0.365 Sum_probs=246.4
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|.+.|.+++|+|+++.+++|+.||.|++|++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 4679999999999999 999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC---eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEec-CCCEEEEEECCC
Q psy2685 82 QR---KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQ 157 (992)
Q Consensus 82 t~---~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~Dg 157 (992)
.. +....+.+|...|.++.| ++..+++++.||.|++|| .++....+..|...+.++.|+| +++.+++++.||
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence 54 667788899999999999 567999999999999999 7888899999999999999999 889999999999
Q ss_pred eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy2685 158 TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG-HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT 236 (992)
Q Consensus 158 ~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~-h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~ 236 (992)
.|++||... ....+.. |...+.++.|+|++. +++++.|+.|++||+.+++
T Consensus 166 ~i~i~d~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 166 TIKLWQNDK----------------------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp CEEEEETTE----------------------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred CEEEEecCc----------------------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence 999999431 4455555 889999999999998 9999999999999999999
Q ss_pred eeeEeeccCccccc------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecC
Q psy2685 237 CLNTFRREQERFWS------EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFER 310 (992)
Q Consensus 237 ~l~~~~~~~~~~~s------~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~ 310 (992)
.+..+..+...+.+ ..+++++.||.|++||+.+++.+..+..|...+++++|+|++++++++.++.+.+|++.+
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred hhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 99999887766542 479999999999999999999999999999999999999999977655555566776655
Q ss_pred Cc
Q psy2685 311 ER 312 (992)
Q Consensus 311 ~~ 312 (992)
.+
T Consensus 297 ~~ 298 (313)
T 3odt_A 297 SR 298 (313)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 40
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.3e-34 Score=327.58 Aligned_cols=305 Identities=18% Similarity=0.288 Sum_probs=252.4
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEE
Q psy2685 31 GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS 110 (992)
Q Consensus 31 g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~s 110 (992)
..+..|+..+......+.+|.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|+++++++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 34556777778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCe-------eEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCCcccCCCe
Q psy2685 111 ASDDQTIRIWNWQSRN-------CICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182 (992)
Q Consensus 111 gs~Dg~I~vwdl~t~~-------~i~~l~~h~~~V~sl~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~ 182 (992)
|+.|+.+++||+.+.. ....+.+|.+.|.++.|+|++ ..+++|+.|++|++||+.+...
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~------------- 192 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR------------- 192 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-------------
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-------------
Confidence 9999999999987532 345678999999999999975 5799999999999999976431
Q ss_pred EEEEEccCCcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeeeeEeeccCcccc-------cCEE
Q psy2685 183 IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMT-KRTCLNTFRREQERFW-------SEVI 253 (992)
Q Consensus 183 I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl~-~~~~l~~~~~~~~~~~-------s~~l 253 (992)
+..+... ...+|...|.++.|+| +++++++|+.|++|++||++ .+..+..+.+|...+. +..+
T Consensus 193 ~~~~~~~--------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 193 ISIFGSE--------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp EEEECCC--------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred EEEeecc--------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE
Confidence 1111100 1157899999999987 88999999999999999998 4577788888876654 3799
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCC-------CEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEe
Q psy2685 254 VSNAEDKSIRLWDMTKRTCLNTFRREQE-------RFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVK 326 (992)
Q Consensus 254 ~sgs~Dg~I~vwd~~t~~~v~~l~~h~~-------~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~ 326 (992)
++++.|++|++||+.++..+..+..+.. .+++++|+|+|++|++|+.+|.+
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i---------------------- 322 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC---------------------- 322 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE----------------------
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE----------------------
Confidence 9999999999999999999888765432 38999999999999999876643
Q ss_pred CCeEEEEEeeCCCceEEE-EeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 327 ERFLHRLDLTNSKDSVVM-QLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 327 ~~~i~i~dl~~~~~~~v~-~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
++||+.+++..... .+..+|...|.+++|+|+|.+|++++.+ |++++|++..
T Consensus 323 ----~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------~~i~iW~~~~ 375 (380)
T 3iz6_a 323 ----YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD------KNLKIWAFSG 375 (380)
T ss_dssp ----EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT------SCEEEEECCS
T ss_pred ----EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC------CCEEEEecCC
Confidence 34665444432221 1224688899999999999999998765 9999999875
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-32 Score=303.32 Aligned_cols=288 Identities=26% Similarity=0.454 Sum_probs=245.7
Q ss_pred CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vw 120 (992)
......+.+|.++|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe
Q psy2685 121 NWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR 200 (992)
Q Consensus 121 dl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~ 200 (992)
|+++++++..+.+|...|.+++|+|+++++++|+.||+|++||+++.+ ....+.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------------~~~~~~ 146 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--------------------------CLKTLP 146 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--------------------------EEEEEC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE--------------------------EEEEec
Confidence 999999999999999999999999999999999999999999987532 456678
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCc-cc-------ccCEEEEEeCCCeEEEEECCCCeE
Q psy2685 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE-RF-------WSEVIVSNAEDKSIRLWDMTKRTC 272 (992)
Q Consensus 201 ~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~-~~-------~s~~l~sgs~Dg~I~vwd~~t~~~ 272 (992)
.|..+|.++.|+|+++++++++.|+.|++||+.+++.+..+..... .+ .+.++++++.|+.|++||+.+++.
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 8999999999999999999999999999999999888777654332 22 137899999999999999999999
Q ss_pred EEEeecCCCCEEE--EEE-eCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecC
Q psy2685 273 LNTFRREQERFWV--LVA-HPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGG 349 (992)
Q Consensus 273 v~~l~~h~~~V~~--la~-spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~ 349 (992)
+..+.+|.....+ ..+ .+++.+|++|+.|+.+ ++||+.+++. +..+ .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i--------------------------~vwd~~~~~~--~~~~-~~ 277 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV--------------------------YIWNLQTKEI--VQKL-QG 277 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCE--------------------------EEEETTTCCE--EEEE-CC
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEE--------------------------EEEECCCchh--hhhh-hc
Confidence 9999887654322 234 4678899998876543 4466655442 2233 35
Q ss_pred CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeC
Q psy2685 350 GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 350 ~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
|...|.+++|+|++..+++++. ..|+.+++|...
T Consensus 278 h~~~v~~~~~~p~~~~l~s~~~----~~d~~i~~W~~d 311 (312)
T 4ery_A 278 HTDVVISTACHPTENIIASAAL----ENDKTIKLWKSD 311 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEEC----TTTCCEEEEECC
T ss_pred cCCcEEEEeecCcCCceEEEEc----cCCccEEEecCC
Confidence 7889999999999999998873 246899999753
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.4e-33 Score=316.25 Aligned_cols=283 Identities=17% Similarity=0.285 Sum_probs=239.5
Q ss_pred cEEeecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCeEEEEec--cCCCCEEEEEEec-CCCEEEEEECCCeEEE
Q psy2685 2 LTKFETKSARVKGLSFHPKR-PWILSSLHNGVIQLWDYRMNTLLEKFD--EHEGPVRGICFHN-QQPIFVSGGDDYKIKV 77 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg-~~Lasg~~dg~I~IWd~~~g~~~~~~~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~V 77 (992)
...+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++++|++++.||.|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 45788999999999999999 899999999999999999887777765 5999999999999 7789999999999999
Q ss_pred EEcCCCeEEEEEcc---CCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCC-EEEEE
Q psy2685 78 WNYKQRKCIFTLLG---HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSA 153 (992)
Q Consensus 78 Wd~~t~~~~~~l~~---h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~-~L~sg 153 (992)
||+.+ .....+.. |...|.+++|+|++++|++|+.|+.|++||+ +++++..+.+|...|.+++|+|+++ ++++|
T Consensus 146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 99986 44555544 4488999999999999999999999999999 5788899999999999999999998 99999
Q ss_pred ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q psy2685 154 SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDM 232 (992)
Q Consensus 154 s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl 232 (992)
+.|++|++||++...... .....+ +|...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 224 ~~d~~i~iwd~~~~~~~~----------------------~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKN----------------------SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp ETTSEEEEEEGGGCCSTT----------------------CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred eCCCEEEEEeCCCCCccc----------------------ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 999999999997532110 133333 6999999999999 9999999999999999999
Q ss_pred CCCeeeeEeeccCccc----------c---cCEEE---------EEeCCCeEEEEECCCCeEEEEeec--CCCCEEEEEE
Q psy2685 233 TKRTCLNTFRREQERF----------W---SEVIV---------SNAEDKSIRLWDMTKRTCLNTFRR--EQERFWVLVA 288 (992)
Q Consensus 233 ~~~~~l~~~~~~~~~~----------~---s~~l~---------sgs~Dg~I~vwd~~t~~~v~~l~~--h~~~V~~la~ 288 (992)
.++.....+..+.... + +..++ +++.|+.|++||+.+++.+.++.+ +...+.+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 9987776666443211 1 12222 456899999999999999999976 4566788899
Q ss_pred eCCCCEEEEEECCCEEEEEec
Q psy2685 289 HPTLNLFAAGHDAGMVVFKFE 309 (992)
Q Consensus 289 spdg~~Lasgsddgiivw~l~ 309 (992)
+|++++|++|+++.+.+|++.
T Consensus 361 s~~g~~l~s~sd~~i~iw~~~ 381 (383)
T 3ei3_B 361 SPTGDVLASGMGFNILIWNRE 381 (383)
T ss_dssp CTTSSEEEEEETTEEEEEECC
T ss_pred ecCccEEEEecCCcEEEEecC
Confidence 999999999987667778765
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.6e-33 Score=343.27 Aligned_cols=280 Identities=21% Similarity=0.397 Sum_probs=239.0
Q ss_pred EEeecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEEcCC-----CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEE
Q psy2685 3 TKFETKSARVKGLSFHPKR-PWILSSLHNGVIQLWDYRM-----NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIK 76 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg-~~Lasg~~dg~I~IWd~~~-----g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 76 (992)
..+++|.+.|++++|+|++ .+|++|+.||+|++||+.+ +.....+.+|...|.+++|+|++++|++|+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3689999999999999875 7999999999999999865 345678889999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE---ecCCCCeEEEEEecCC--CEEE
Q psy2685 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL---TGHNHYVMCAQFHPTD--DIVV 151 (992)
Q Consensus 77 VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l---~~h~~~V~sl~fspdg--~~L~ 151 (992)
+||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++ ..++
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 9999999999999999999999999999999999999999999998654433322 3688899999999987 6899
Q ss_pred EEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy2685 152 SASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231 (992)
Q Consensus 152 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwd 231 (992)
+|+.|++|++||+++.+ ....+.+|.+.|++++|+|++++|++++.|++|++||
T Consensus 536 s~s~d~~v~vwd~~~~~--------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCK--------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589 (694)
T ss_dssp EEETTSCEEEEETTTCC--------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred EEeCCCeEEEEECCCCc--------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99999999999987532 4567889999999999999999999999999999999
Q ss_pred CCCCeeeeEeeccCccc---c--cCEEEEEeCCCeEEEEECCCCeEEEEeecCC-------------------CCEEEEE
Q psy2685 232 MTKRTCLNTFRREQERF---W--SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ-------------------ERFWVLV 287 (992)
Q Consensus 232 l~~~~~l~~~~~~~~~~---~--s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~-------------------~~V~~la 287 (992)
+.+++.+..+..+.... + ...+++++.++.|++||+.++..+..+..+. ..+++++
T Consensus 590 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 590 LAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp TTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 99998887766543211 1 1445555667789999999999887765321 1378899
Q ss_pred EeCCCCEEEEEECCCEE-EEEe
Q psy2685 288 AHPTLNLFAAGHDAGMV-VFKF 308 (992)
Q Consensus 288 ~spdg~~Lasgsddgii-vw~l 308 (992)
|||+|++|++|+.||.+ +|++
T Consensus 670 ~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 670 WSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC
T ss_pred EcCCCCEEEEEcCCCeEEEEec
Confidence 99999999999988755 5654
No 44
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=316.58 Aligned_cols=295 Identities=15% Similarity=0.236 Sum_probs=243.3
Q ss_pred EEeecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCeEEEEe-------------ccCCCCEEEEEEec-CCCEEE
Q psy2685 3 TKFETKSARVKGLSFHP-KRPWILSSLHNGVIQLWDYRMNTLLEKF-------------DEHEGPVRGICFHN-QQPIFV 67 (992)
Q Consensus 3 ~~l~~H~~~V~~iafsp-dg~~Lasg~~dg~I~IWd~~~g~~~~~~-------------~~h~~~V~~l~fsp-dg~~La 67 (992)
..+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+ .+|...|.+++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 46788999999999999 9999999999999999999877543333 25999999999999 777999
Q ss_pred EEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCC---EEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEe
Q psy2685 68 SGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP---WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFH 144 (992)
Q Consensus 68 sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~---~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fs 144 (992)
+++.||.|++||+.+++....+. +...+.++.|+|.++ ++++|+.||.|++||+++++.+..+.+|...|.+++|+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred EEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence 99999999999999999888776 778899999998554 99999999999999999999999999999999999999
Q ss_pred cCCC-EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcc--eEEEEEeccCCCeEEEEEcCCCCEEEEE
Q psy2685 145 PTDD-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKA--WEVDIFRGHYNNVSCVLFHPKSEVIVSN 221 (992)
Q Consensus 145 pdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~--~~i~~l~~h~~~V~~v~fspdg~~L~s~ 221 (992)
|+++ .+++|+.||.|++||++.... .+..++...... .......+|...|.+++|+|++++|+++
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASG------------CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSC------------CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCc------------ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 9998 699999999999999986531 111111111000 0111235788999999999999999999
Q ss_pred eCCCeEEEEECCCCeeeeEeeccCcc------------cccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEe
Q psy2685 222 AEDKSIRLWDMTKRTCLNTFRREQER------------FWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAH 289 (992)
Q Consensus 222 s~Dg~I~vwdl~~~~~l~~~~~~~~~------------~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~s 289 (992)
+.|+.|++||+.+++....+..+... .....+++++.++.|++||+.+++.+..+.+|...|++++|+
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s 343 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ 343 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc
Confidence 99999999999998765444322111 012677888899999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCE-EEEEecC
Q psy2685 290 PTLNLFAAGHDAGM-VVFKFER 310 (992)
Q Consensus 290 pdg~~Lasgsddgi-ivw~l~~ 310 (992)
|++++|++|+.||. .+|++..
T Consensus 344 ~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 344 SNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp TTTTEEEEEETTSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEeCCC
Confidence 99999999987764 3555443
No 45
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-33 Score=319.26 Aligned_cols=278 Identities=11% Similarity=0.171 Sum_probs=244.4
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe------EEEEeccCCCCEEEEEEecC----C---CEEEEE
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT------LLEKFDEHEGPVRGICFHNQ----Q---PIFVSG 69 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~------~~~~~~~h~~~V~~l~fspd----g---~~Lasg 69 (992)
..+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..|..+|.+++|+|+ + ++|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 46789999999999999 799999999999999999887 67888899999999999999 9 999999
Q ss_pred ECCCeEEEEEcCCCeE-----EEEEccC-----CCCEEEEEEe----cCCCE-EEEEECCCeEEEEECCC------CeeE
Q psy2685 70 GDDYKIKVWNYKQRKC-----IFTLLGH-----LDYIRTTFFH----HEYPW-ILSASDDQTIRIWNWQS------RNCI 128 (992)
Q Consensus 70 s~Dg~I~VWd~~t~~~-----~~~l~~h-----~~~V~~i~fs----pd~~~-L~sgs~Dg~I~vwdl~t------~~~i 128 (992)
+.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++|+.||.|++||+++ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999988876 7888888 5999999999 99999 99999999999999988 6665
Q ss_pred E-----EE-------ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEE
Q psy2685 129 C-----VL-------TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEV 196 (992)
Q Consensus 129 ~-----~l-------~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i 196 (992)
. .+ ..|...|.+++|+|++ .+++++.||.|++||+++.. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--------------------------~~ 220 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR--------------------------PL 220 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE--------------------------EE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc--------------------------ee
Confidence 5 66 4488999999999999 99999999999999997532 45
Q ss_pred EEEec---c---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeeEeec-------------cCcccc-----
Q psy2685 197 DIFRG---H---YNNVSCVLFHPKSEVIVSNAED---KSIRLWDMTKRTCLNTFRR-------------EQERFW----- 249 (992)
Q Consensus 197 ~~l~~---h---~~~V~~v~fspdg~~L~s~s~D---g~I~vwdl~~~~~l~~~~~-------------~~~~~~----- 249 (992)
..+.. | ...|.+++|+|++.+|++++.| +.|++||+.+++.+..+.. +...+.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC
Confidence 55666 8 8999999999999999999999 9999999999999988887 665543
Q ss_pred --cCEEEEEeCCCeEEEEECCCCeEEEEee------cC---------------CCCEEEEEEeCCC----------CEEE
Q psy2685 250 --SEVIVSNAEDKSIRLWDMTKRTCLNTFR------RE---------------QERFWVLVAHPTL----------NLFA 296 (992)
Q Consensus 250 --s~~l~sgs~Dg~I~vwd~~t~~~v~~l~------~h---------------~~~V~~la~spdg----------~~La 296 (992)
+.++++++.|+.|++||+.+++.+..+. .| ...|++++|+|++ ++|+
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 3799999999999999999999999998 77 8999999999998 7899
Q ss_pred EEECCCEE-EEEec
Q psy2685 297 AGHDAGMV-VFKFE 309 (992)
Q Consensus 297 sgsddgii-vw~l~ 309 (992)
+|+.|+.+ +|++.
T Consensus 381 s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 381 CVCLDRSIRWFREA 394 (397)
T ss_dssp EEETTTEEEEEEEE
T ss_pred EecCCCcEEEEEcC
Confidence 98877654 55554
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-33 Score=325.68 Aligned_cols=346 Identities=14% Similarity=0.121 Sum_probs=258.8
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLG 91 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~ 91 (992)
+++++|+|++++|++|+.||.|++||..+++....+..| ..+....|+|++++|++|+.||.|++||+.+++....+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 458999999999999999999999999887665555555 4455557899999999999999999999999999888889
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcccc
Q psy2685 92 HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKN 171 (992)
Q Consensus 92 h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~ 171 (992)
|.+.|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++.|++++.||+|++||+++.+...
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754322
Q ss_pred ccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeec-cCcccc-
Q psy2685 172 VAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRR-EQERFW- 249 (992)
Q Consensus 172 ~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~-~~~~~~- 249 (992)
...........+.-....... .......+...+.+++|+|++++|++++.||.|++||+.+++.+..+.. +...+.
T Consensus 218 ~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 218 TFNRKENPHDGVNSIALFVGT--DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EECBTTBTTCCEEEEEEEECC--CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred EeecCCCCCCCccEEEEecCC--cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 211100000111000000000 0000122456778888899999999999999999999999887776654 333332
Q ss_pred ------cC-EEEEEeCCCeEEEEECCCCeE-EEEeec-CCCCEEEEEEeCCCCEEEEEECCCE-EEEEecCCcceEEeec
Q psy2685 250 ------SE-VIVSNAEDKSIRLWDMTKRTC-LNTFRR-EQERFWVLVAHPTLNLFAAGHDAGM-VVFKFERERPAYTVHN 319 (992)
Q Consensus 250 ------s~-~l~sgs~Dg~I~vwd~~t~~~-v~~l~~-h~~~V~~la~spdg~~Lasgsddgi-ivw~l~~~~~~~~~~~ 319 (992)
+. ++++++.||.|++||+.+++. +..+.. |...+.++.+ |++++|++|+.|+. .+|++.........
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-- 372 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPA-- 372 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCE--
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccc--
Confidence 24 899999999999999998754 677766 5667888755 57889999887664 35555432111000
Q ss_pred cEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCC---EEEEEecCCccccCCeEEEEEeCC
Q psy2685 320 NVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH---SILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 320 ~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~---~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
..... +.. ...+...|..++|+|++. .+++++.+ |.+.+|.+..
T Consensus 373 ----------------~~~~~-~~~--~~~~~~~v~~~~~s~~~~~~g~l~a~g~~------g~~~~~~~~~ 419 (420)
T 3vl1_A 373 ----------------IEFET-PTF--LVSNDDAVSQFCYVSDDESNGEVLEVGKN------NFCALYNLSN 419 (420)
T ss_dssp ----------------ECTTS-CEE--ECCSSCCCCEEEEECCSSSSCEEEEEETT------TEEEEEESCC
T ss_pred ----------------eeccC-ccE--EccCCcceEEEEEccCCCCcceEEEEcCC------ceEEEEeccC
Confidence 00010 111 124677899999999999 66666554 7899998753
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-35 Score=336.06 Aligned_cols=345 Identities=14% Similarity=0.235 Sum_probs=267.2
Q ss_pred CCEEEEEEcCCCC-EEEEE----------EcCCeEEEEEcCCCe---EEEEeccCCCCEEEEEEecCCCEEEEEECCCeE
Q psy2685 10 ARVKGLSFHPKRP-WILSS----------LHNGVIQLWDYRMNT---LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKI 75 (992)
Q Consensus 10 ~~V~~iafspdg~-~Lasg----------~~dg~I~IWd~~~g~---~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I 75 (992)
.+|.+++|+|+++ +|++| +.||.|++||+.++. .+..+ .|...|.+++|+|++++|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 4789999999987 99999 889999999998775 33334 588999999999999999999999999
Q ss_pred EEEEcCC----CeEEEEEccCCCCEEEEEEecC-CCEEEEEECCCeEEEEECCCCe------eEEE---EecCCCCeEEE
Q psy2685 76 KVWNYKQ----RKCIFTLLGHLDYIRTTFFHHE-YPWILSASDDQTIRIWNWQSRN------CICV---LTGHNHYVMCA 141 (992)
Q Consensus 76 ~VWd~~t----~~~~~~l~~h~~~V~~i~fspd-~~~L~sgs~Dg~I~vwdl~t~~------~i~~---l~~h~~~V~sl 141 (992)
++||+.+ .+....+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++ .... ..+|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 4578888999999999999998 8999999999999999999876 3333 36789999999
Q ss_pred EEecC-CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc------CCCeEEEEEcCC
Q psy2685 142 QFHPT-DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH------YNNVSCVLFHPK 214 (992)
Q Consensus 142 ~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h------~~~V~~v~fspd 214 (992)
+|+|+ +.++++++.||.|++||+++.+ ....+..| ...|.+++|+|+
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKK--------------------------EVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTE--------------------------EEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCC--------------------------cceEEeccccccccCCceEEEEECCC
Confidence 99999 6899999999999999997643 23333333 788999999999
Q ss_pred C-CEEEEEeCCC---eEEEEECCCC-eeeeEee-ccCcccc--------cCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy2685 215 S-EVIVSNAEDK---SIRLWDMTKR-TCLNTFR-REQERFW--------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ 280 (992)
Q Consensus 215 g-~~L~s~s~Dg---~I~vwdl~~~-~~l~~~~-~~~~~~~--------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~ 280 (992)
+ .++++++.|+ .|++||+.++ .++..+. .|...+. +.++++++.|+.|++||+.+++.+..+..|.
T Consensus 226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 7 6999999998 9999999986 5666666 5554432 3789999999999999999999999999999
Q ss_pred CCEEEEEEeCCC-CEEEEEECCC-EEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeC----CCceEEE--EeecCCCc
Q psy2685 281 ERFWVLVAHPTL-NLFAAGHDAG-MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTN----SKDSVVM--QLRGGGRI 352 (992)
Q Consensus 281 ~~V~~la~spdg-~~Lasgsddg-iivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~----~~~~~v~--~l~~~~~~ 352 (992)
..|.+++|+|++ .+|++++.|+ +.+|++............. .........+|.-.. ....... .....+..
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE-TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccc-ccccCCcccccccccccccccccccccccCCccccC
Confidence 999999999999 8999998776 4589987665432211100 000001111121100 0000000 11122566
Q ss_pred cceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 353 PAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 353 ~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
++..++|+|+|++|++++. ++.+++|++..
T Consensus 385 ~~~~~~~s~dg~~la~~~~------d~~v~~w~~~~ 414 (416)
T 2pm9_A 385 PSPAAHWAFGGKLVQITPD------GKGVSITNPKI 414 (416)
T ss_dssp CSCCCEEETTTEEECBCTT------SSCBCCBCCCC
T ss_pred CccceEEeeCCeEEEEeCC------CCeEEEEEecc
Confidence 7889999999999997765 48999998764
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.5e-34 Score=332.69 Aligned_cols=288 Identities=17% Similarity=0.286 Sum_probs=233.0
Q ss_pred cEEeecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCe--EEEEeccCCCCEEEEEEec-CCCEEEEEECCCeEEE
Q psy2685 2 LTKFETKSARVKGLSFHP-KRPWILSSLHNGVIQLWDYRMNT--LLEKFDEHEGPVRGICFHN-QQPIFVSGGDDYKIKV 77 (992)
Q Consensus 2 l~~l~~H~~~V~~iafsp-dg~~Lasg~~dg~I~IWd~~~g~--~~~~~~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~V 77 (992)
.....+|..+|+|++||| ++.+||+|+.||.|+|||+.+++ ....+.+|.+.|++++|+| ++.+|++|+.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 346778999999999999 56789999999999999998765 3445668999999999998 6889999999999999
Q ss_pred EEcCCCeEEEEEcc--CCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCC-EEEEEE
Q psy2685 78 WNYKQRKCIFTLLG--HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSAS 154 (992)
Q Consensus 78 Wd~~t~~~~~~l~~--h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs 154 (992)
||++++........ +...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|+++ ++++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEec
Confidence 99987765444433 34467899999999999999999999999986 456778889999999999999985 788999
Q ss_pred CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy2685 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 155 ~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~ 234 (992)
.|++|++||++...... ......+|...|++++|+|+|.+|++++.|++|++||+.+
T Consensus 271 ~d~~v~iwd~~~~~~~~-----------------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKA-----------------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp TTSBCCEEETTTCCSSS-----------------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred CcceeeEEecccccccc-----------------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 99999999997644221 1222457999999999999999999999999999999999
Q ss_pred CeeeeEeeccCccc----------c---cCEEEEEe------------CCCeEEEEECCCCeEEEEee-cCCCCEEEE-E
Q psy2685 235 RTCLNTFRREQERF----------W---SEVIVSNA------------EDKSIRLWDMTKRTCLNTFR-REQERFWVL-V 287 (992)
Q Consensus 235 ~~~l~~~~~~~~~~----------~---s~~l~sgs------------~Dg~I~vwd~~t~~~v~~l~-~h~~~V~~l-a 287 (992)
+.....+..+.... + ...+++++ .++.|++||..+++.+..+. +|...|.++ +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~ 407 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE 407 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence 88776665443211 1 13444443 34679999999999988874 677788887 6
Q ss_pred EeCCCCEEEEEECCCEEEEEecCCcc
Q psy2685 288 AHPTLNLFAAGHDAGMVVFKFERERP 313 (992)
Q Consensus 288 ~spdg~~Lasgsddgiivw~l~~~~~ 313 (992)
|||+|++|++|+++.+.+|+++..++
T Consensus 408 fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 408 FNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp ECTTSSCEEEECSSEEEECCCC----
T ss_pred ECCCCCEEEEEcCCcEEEEECCcCee
Confidence 99999999999988888888766543
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=303.66 Aligned_cols=317 Identities=16% Similarity=0.302 Sum_probs=246.1
Q ss_pred CeEEEEeccCCC-CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE---EccCCCCEEEEEEecCCCEEEEEECCCe
Q psy2685 41 NTLLEKFDEHEG-PVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT---LLGHLDYIRTTFFHHEYPWILSASDDQT 116 (992)
Q Consensus 41 g~~~~~~~~h~~-~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~---l~~h~~~V~~i~fspd~~~L~sgs~Dg~ 116 (992)
.+++.++.+|.+ .|.+++|+|+|++|++|+.||+|+|||+.++..... ..+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356778889987 999999999999999999999999999988864422 2689999999999999999999999999
Q ss_pred EEEEECCCC--eeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 117 IRIWNWQSR--NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 117 I~vwdl~t~--~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
+++||..++ +++.++.+|...|.+++|+|++++|++|+.|++|++||+..... ..
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-----------------------~~ 141 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-----------------------YE 141 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-----------------------EE
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-----------------------eE
Confidence 999999876 46788999999999999999999999999999999999875321 02
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEE
Q psy2685 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLN 274 (992)
Q Consensus 195 ~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~ 274 (992)
....+.+|...|.+++|+|++++|++++.|++|++||..++.. .+..
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---------------------------------~~~~ 188 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---------------------------------VCCA 188 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---------------------------------EEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---------------------------------EEEE
Confidence 4566789999999999999999999999999999998654321 2345
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEECCCE-EEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCcc
Q psy2685 275 TFRREQERFWVLVAHPTLNLFAAGHDAGM-VVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIP 353 (992)
Q Consensus 275 ~l~~h~~~V~~la~spdg~~Lasgsddgi-ivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~ 353 (992)
++.+|...|++++|+|++++|++|+.|+. .+|+............. ..+ .....+..+...|...
T Consensus 189 ~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS----GSD----------PSWKCICTLSGFHSRT 254 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----------------CEEEEEEEECSSCSSC
T ss_pred EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee----ccC----------CccceeEEecCCCCCc
Confidence 67789999999999999999999987774 47775322110000000 000 0011223333447788
Q ss_pred ceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCcccc-------ceeccCccccceEEEEecCC--eEEEEEcCCeE
Q psy2685 354 AHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESER-------KEVADGKRSTGISAVWVARN--RFAVLDRNHTI 424 (992)
Q Consensus 354 I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~-------~~~~~~~~~~~~s~~w~~~~--~~av~~~~g~I 424 (992)
|++++|+|++..+++++.+ +.+++|+........ ......+...+..+.|++++ .++.+..+|+|
T Consensus 255 v~~v~~~~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 255 IYDIAWCQLTGALATACGD------DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp EEEEEECTTTCCEEEEETT------SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEEecCCCEEEEEeCC------CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence 9999999999999998865 899999986543211 01123456678889999864 67778889999
Q ss_pred EEEEcCCcc
Q psy2685 425 LIKNLKNEY 433 (992)
Q Consensus 425 ~i~dl~~~~ 433 (992)
++|++.+..
T Consensus 329 ~~W~~~~~~ 337 (345)
T 3fm0_A 329 AFWKYQRPE 337 (345)
T ss_dssp EEEEECC--
T ss_pred EEEEecCCC
Confidence 999997654
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-32 Score=307.61 Aligned_cols=337 Identities=16% Similarity=0.152 Sum_probs=255.3
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT--LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~--~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
.+..|.++|++++|+|++++|++|+.||.|++||..+++ .+..+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456799999999999999999999999999999999987 888899999999999999999999999999999999999
Q ss_pred CCeEEEEE--ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCee---EEE-EecCCCCeEEEEEecCCCEEEEEEC
Q psy2685 82 QRKCIFTL--LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC---ICV-LTGHNHYVMCAQFHPTDDIVVSASL 155 (992)
Q Consensus 82 t~~~~~~l--~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~---i~~-l~~h~~~V~sl~fspdg~~L~sgs~ 155 (992)
+++..... ..|...|.+++|+|+++++++|+.|+.|++||++++.. ... ..+|...|.+++|+|+++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 88765444 67999999999999999999999999999999988762 233 3578999999999999999999999
Q ss_pred CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy2685 156 DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235 (992)
Q Consensus 156 Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~ 235 (992)
||.|++||++......... ...|............+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 163 dg~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~- 233 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPA--------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK- 233 (372)
T ss_dssp TSCEEEEECCCTTTSCCCC--------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-
T ss_pred CCCEEEEEccccccccccc--------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-
Confidence 9999999986432111100 0001111111135677778999999999999999999999999999887654
Q ss_pred eeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceE
Q psy2685 236 TCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAY 315 (992)
Q Consensus 236 ~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~ 315 (992)
++++..+..|..++.+++|+|++.++++|.++.+.+|++......+
T Consensus 234 ----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 234 ----------------------------------KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp ----------------------------------TTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEE
T ss_pred ----------------------------------CceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceE
Confidence 3445566677788999999999999999988888999987722111
Q ss_pred Eeecc-----EEEEEeCCeEEEE---EeeCCCc---eEEEEeecCCCccceeEEEc-cCC---CEEEEEecCCccccCCe
Q psy2685 316 TVHNN-----VMYYVKERFLHRL---DLTNSKD---SVVMQLRGGGRIPAHSISYN-ATE---HSILVTTRNANNFENST 380 (992)
Q Consensus 316 ~~~~~-----~v~~~~~~~i~i~---dl~~~~~---~~v~~l~~~~~~~I~~lafs-pdg---~~lav~~~~~~~~~~g~ 380 (992)
..... .........++.| +...... .....+..+|..+|.+++|+ ++| .++++++.+ |.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D------g~ 353 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD------GG 353 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT------SE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCC------Cc
Confidence 11000 0000011112222 2111000 00022334688999999966 676 999998865 99
Q ss_pred EEEEEeCCC
Q psy2685 381 YDLYMIPKE 389 (992)
Q Consensus 381 i~i~~l~~~ 389 (992)
+++|++...
T Consensus 354 i~~W~~~~~ 362 (372)
T 1k8k_C 354 MSIWDVRSL 362 (372)
T ss_dssp EEEEEHHHH
T ss_pred eEEEEecCh
Confidence 999998653
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.9e-32 Score=299.27 Aligned_cols=275 Identities=13% Similarity=0.256 Sum_probs=237.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeE---EEEec--cCCCCEEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTL---LEKFD--EHEGPVRGICFHNQQPIFVSGGDDYKIKVW 78 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~---~~~~~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~VW 78 (992)
...+|.+.|++++|+|++++|++++ ||.|++||+.++.. ...+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3457999999999999999999998 99999999987642 23333 689999999999999999999999999999
Q ss_pred EcCCCe--EEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECC
Q psy2685 79 NYKQRK--CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD 156 (992)
Q Consensus 79 d~~t~~--~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D 156 (992)
|+.+++ ....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+.+|...|.+++|+|+++.+++++.|
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 999887 667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT 236 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~ 236 (992)
|.|++||+++.+ .... ..|...+.+++|+|+++++++++.|+.|++||+.+++
T Consensus 205 g~i~~~d~~~~~--------------------------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 205 NTVRSWDLREGR--------------------------QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp SEEEEEETTTTE--------------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred CcEEEEECCCCc--------------------------eEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence 999999987642 1222 2467889999999999999999999999999999876
Q ss_pred eeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCC-EEEEEe
Q psy2685 237 CLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAG-MVVFKF 308 (992)
Q Consensus 237 ~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddg-iivw~l 308 (992)
.. .+..+...+. +.++++++.||.|++||+.+++.+... .|...+.+++|+|++++|++++.+| +.+|++
T Consensus 258 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 258 KY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 54 3444444332 378999999999999999999887544 5788999999999999999998777 446664
No 52
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-31 Score=298.17 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=232.5
Q ss_pred eEEEEeccCCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCC-----CeEEEEEccCCCCEEEEEEecCCCEEEEEECCC
Q psy2685 42 TLLEKFDEHEGPVRGICFHNQQ-PIFVSGGDDYKIKVWNYKQ-----RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQ 115 (992)
Q Consensus 42 ~~~~~~~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg 115 (992)
.+..++.+|.++|.+++|+|++ ++|++|+.|++|++||+.. +.++..+.+|...|.+++|+|++.++++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3556789999999999999965 7999999999999999853 345678899999999999999999999999999
Q ss_pred eEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceE
Q psy2685 116 TIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE 195 (992)
Q Consensus 116 ~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~ 195 (992)
+|++||+++++++..+.+|...|.+++|+|++..+++|+.|++|++||+++ ..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---------------------------~~ 140 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------------------------QC 140 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---------------------------CE
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------------Ce
Confidence 999999999999999999999999999999999999999999999999864 25
Q ss_pred EEEEeccCCCeEEEEEcCCCC------EEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCC
Q psy2685 196 VDIFRGHYNNVSCVLFHPKSE------VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTK 269 (992)
Q Consensus 196 i~~l~~h~~~V~~v~fspdg~------~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t 269 (992)
...+.+|...|.++.|+|.+. .+++++.|++|++| |+.+
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w-----------------------------------d~~~ 185 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW-----------------------------------NLNQ 185 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE-----------------------------------ETTT
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE-----------------------------------ECCc
Confidence 567789999999999999643 55666665555555 5555
Q ss_pred CeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecC
Q psy2685 270 RTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGG 349 (992)
Q Consensus 270 ~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~ 349 (992)
++....+.+|...|.+++|+|++++|++|+.|+.+ ++||+.+++. +..+.
T Consensus 186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i--------------------------~iwd~~~~~~--~~~~~-- 235 (319)
T 3frx_A 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI--------------------------MLWNLAAKKA--MYTLS-- 235 (319)
T ss_dssp TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE--------------------------EEEETTTTEE--EEEEE--
T ss_pred chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE--------------------------EEEECCCCcE--EEEec--
Confidence 56666778899999999999999999999876643 4466654432 23332
Q ss_pred CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccce------eccCccccceEEEEecCCeEE-EEEcCC
Q psy2685 350 GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE------VADGKRSTGISAVWVARNRFA-VLDRNH 422 (992)
Q Consensus 350 ~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~------~~~~~~~~~~s~~w~~~~~~a-v~~~~g 422 (992)
+..+|.+++|+|++.++++++.+ .+++|.+......... ........+.++.|+++++++ .+..++
T Consensus 236 ~~~~v~~~~~sp~~~~la~~~~~-------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 236 AQDEVFSLAFSPNRYWLAAATAT-------GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp CCSCEEEEEECSSSSEEEEEETT-------EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCC-------CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 24578999999999999988764 6899988754321110 011223456788999988655 566699
Q ss_pred eEEEEEcCC
Q psy2685 423 TILIKNLKN 431 (992)
Q Consensus 423 ~I~i~dl~~ 431 (992)
+|++||+.+
T Consensus 309 ~i~vWd~~t 317 (319)
T 3frx_A 309 VIRVWQVMT 317 (319)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEEEee
Confidence 999999864
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-32 Score=309.21 Aligned_cols=302 Identities=18% Similarity=0.327 Sum_probs=242.6
Q ss_pred eecCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEEcCCCeEEEEecc-----CCCCEEEEEEecC----CCEEEEEEC
Q psy2685 5 FETKSARVKGLSFHPK----RPWILSSLHNGVIQLWDYRMNTLLEKFDE-----HEGPVRGICFHNQ----QPIFVSGGD 71 (992)
Q Consensus 5 l~~H~~~V~~iafspd----g~~Lasg~~dg~I~IWd~~~g~~~~~~~~-----h~~~V~~l~fspd----g~~Lasgs~ 71 (992)
.++|.++|++++|+|+ ...+++++.++.|++||..+++.+..+.. |...|.+++|+|+ +++|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999994 55677777788999999998876666653 5578999999999 679999999
Q ss_pred CCeEEEEEcCCCeEEEEEccCCCCEEEEEEec-CCCEEEEEECCCeEEEEECCCCeeEEEE---ecCCCCeEEEEEecCC
Q psy2685 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH-EYPWILSASDDQTIRIWNWQSRNCICVL---TGHNHYVMCAQFHPTD 147 (992)
Q Consensus 72 Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fsp-d~~~L~sgs~Dg~I~vwdl~t~~~i~~l---~~h~~~V~sl~fspdg 147 (992)
||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence 99999999999999999999999999999999 8999999999999999999999999988 6899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCC--cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q psy2685 148 DIVVSASLDQTIRVWDISGLRKKNVAPG--MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDK 225 (992)
Q Consensus 148 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg 225 (992)
+.+++++.||.|++||+++.+....... ....++....+..............+|...|.++.|+ ++++++++.|+
T Consensus 174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 251 (366)
T 3k26_A 174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN 251 (366)
T ss_dssp SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence 9999999999999999987543221110 0000000000000000011344566799999999999 77999999999
Q ss_pred eEEEEECCCCee--------------eeEeeccCcccc---------cCEEEEEeCCCeEEEEECCCCe----EEEEeec
Q psy2685 226 SIRLWDMTKRTC--------------LNTFRREQERFW---------SEVIVSNAEDKSIRLWDMTKRT----CLNTFRR 278 (992)
Q Consensus 226 ~I~vwdl~~~~~--------------l~~~~~~~~~~~---------s~~l~sgs~Dg~I~vwd~~t~~----~v~~l~~ 278 (992)
.|++||+.++.. +..+..+...++ +.++++++.||.|++||+.+++ ....+..
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 331 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 331 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence 999999987643 666666654432 5789999999999999999875 4457777
Q ss_pred C--CCCEEEEEEeCCCCEEEEEECCCEE-EEEe
Q psy2685 279 E--QERFWVLVAHPTLNLFAAGHDAGMV-VFKF 308 (992)
Q Consensus 279 h--~~~V~~la~spdg~~Lasgsddgii-vw~l 308 (992)
| ...|++++|+|++++|++|+.||.+ +|++
T Consensus 332 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 332 HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 7 7899999999999999999887754 5654
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-33 Score=316.37 Aligned_cols=309 Identities=15% Similarity=0.204 Sum_probs=221.8
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEEC------CCeEEEEEcCCCeEE
Q psy2685 13 KGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD------DYKIKVWNYKQRKCI 86 (992)
Q Consensus 13 ~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~------Dg~I~VWd~~t~~~~ 86 (992)
..+.+.+++.++.+. .+.....|++.... ...|...|++++|+|||++|++|+. ||.|++|+..++...
T Consensus 9 sg~d~g~~~~~~~~~-g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 9 SGVDLGTENLYFQSN-GSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred cCCCCCccceEEecC-CCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 455666666554444 46678899875432 3469999999999999999999997 788999988776542
Q ss_pred ----EEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE----EEEecCCCCeEEEEEecCCCEEEEEECCCe
Q psy2685 87 ----FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI----CVLTGHNHYVMCAQFHPTDDIVVSASLDQT 158 (992)
Q Consensus 87 ----~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i----~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~ 158 (992)
....+|...|.+++|+|++. +++++.||+|++||+.+++.. ....+|...|++++|+|++++|++|+.||+
T Consensus 84 ~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 84 ESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp GGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred eeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 33457889999999999975 667889999999999887654 344589999999999999999999999999
Q ss_pred EEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee
Q psy2685 159 IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKRTC 237 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~vwdl~~~~~ 237 (992)
|++||+++.. .+..+.+|...|.+++|+|+++ ++++++.|++|++||+.++++
T Consensus 163 v~iwd~~~~~--------------------------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~ 216 (357)
T 4g56_B 163 VKVWDLSQKA--------------------------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP 216 (357)
T ss_dssp EEEEETTTTE--------------------------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred EEEEECCCCc--------------------------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence 9999987642 5667889999999999999875 789999999999999999877
Q ss_pred eeEeecc--Cccc----c----cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCC-CEEEEEECCCEEEE
Q psy2685 238 LNTFRRE--QERF----W----SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTL-NLFAAGHDAGMVVF 306 (992)
Q Consensus 238 l~~~~~~--~~~~----~----s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg-~~Lasgsddgiivw 306 (992)
...+... ...+ + +.++++|+.|+.|++||+.+++++.++.+|...|++++|+|++ ++||+|+.|+.
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~--- 293 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT--- 293 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC---
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE---
Confidence 6655432 2211 1 2689999999999999999999999999999999999999987 57888887653
Q ss_pred EecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEcc-CCCEEEEEecCCccccCCeEEEEE
Q psy2685 307 KFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA-TEHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 307 ~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafsp-dg~~lav~~~~~~~~~~g~i~i~~ 385 (992)
|++||+.+++. ... .+|...|++++|+| ++..|++++.+ |.+++|+
T Consensus 294 -----------------------i~iwd~~~~~~---~~~-~~H~~~V~~vafsP~d~~~l~s~s~D------g~v~iW~ 340 (357)
T 4g56_B 294 -----------------------VAVLDADFSEV---FRD-LSHRDFVTGVAWSPLDHSKFTTVGWD------HKVLHHH 340 (357)
T ss_dssp -----------------------EEEECTTSCEE---EEE-CCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEE
T ss_pred -----------------------EEEEECCCCcE---eEE-CCCCCCEEEEEEeCCCCCEEEEEcCC------CeEEEEE
Confidence 34566655432 222 25788999999999 79999988765 9999999
Q ss_pred eCCC
Q psy2685 386 IPKE 389 (992)
Q Consensus 386 l~~~ 389 (992)
++..
T Consensus 341 ~~~~ 344 (357)
T 4g56_B 341 LPSE 344 (357)
T ss_dssp CC--
T ss_pred CCCC
Confidence 9764
No 55
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=312.80 Aligned_cols=290 Identities=20% Similarity=0.262 Sum_probs=222.1
Q ss_pred EEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-----------CeEEEEEccCCCCEEEEEE
Q psy2685 33 IQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ-----------RKCIFTLLGHLDYIRTTFF 101 (992)
Q Consensus 33 I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~h~~~V~~i~f 101 (992)
.+.|++....+ ..|...|.+++|+|||.+|++++ |+++++||... .........|...|.+++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 45677654322 34677899999999999998877 67888886321 0111112245678999999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeeEEE----EecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcc
Q psy2685 102 HHEYPWILSASDDQTIRIWNWQSRNCICV----LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMG 177 (992)
Q Consensus 102 spd~~~L~sgs~Dg~I~vwdl~t~~~i~~----l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 177 (992)
+|++ .+++|+.||+|++||+++++.+.. ..+|.+.|++++|+|++++|++|+.|++|++||+.+.+
T Consensus 91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--------- 160 (344)
T 4gqb_B 91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV--------- 160 (344)
T ss_dssp ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------
T ss_pred eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc---------
Confidence 9985 688999999999999998875543 45899999999999999999999999999999987642
Q ss_pred cCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEeeccCc--cc------
Q psy2685 178 ADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQE--RF------ 248 (992)
Q Consensus 178 ~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~--~~------ 248 (992)
.+..+.+|.+.|.++.|+|++ .++++++.|++|++||+.++++...+..... ..
T Consensus 161 -----------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 161 -----------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp -----------------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred -----------------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 567788999999999999988 4789999999999999999988777653321 11
Q ss_pred --ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCC-CEEEEEECCCEEEEEecCCcceEEeeccEEEEE
Q psy2685 249 --WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTL-NLFAAGHDAGMVVFKFERERPAYTVHNNVMYYV 325 (992)
Q Consensus 249 --~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg-~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~ 325 (992)
.+.++++|+.|+.|++||+++++++.++.+|...|++++|+|++ ++|++|+.|+.
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~---------------------- 281 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS---------------------- 281 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC----------------------
T ss_pred CCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe----------------------
Confidence 12688999999999999999999999999999999999999998 57899887654
Q ss_pred eCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCE-EEEEecCCccccCCeEEEEEeCCCc
Q psy2685 326 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHS-ILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 326 ~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~-lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
|++||+.+++ +..+ .+|...|.+++|+|++.. +++++. ||++++|.++..+
T Consensus 282 ----i~vwd~~~~~---~~~~-~~H~~~V~~v~~sp~~~~llas~s~------D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 282 ----LAVLDSSLSE---LFRS-QAHRDFVRDATWSPLNHSLLTTVGW------DHQVVHHVVPTEP 333 (344)
T ss_dssp ----EEEECTTCCE---EEEE-CCCSSCEEEEEECSSSTTEEEEEET------TSCEEEEECCC--
T ss_pred ----EEEEECCCCc---EEEE-cCCCCCEEEEEEeCCCCeEEEEEcC------CCeEEEEECCCCC
Confidence 3456665443 2233 468899999999999975 455654 4999999997654
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-34 Score=327.27 Aligned_cols=336 Identities=13% Similarity=0.113 Sum_probs=240.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC--eEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN--TLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g--~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
.++.|.++|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 45667889999999999999999999999999999988 7778889999999999999999999999999999999999
Q ss_pred CCe---EEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCe---eEEEEec-CCCCeEEEEEecCCCEEEEEE
Q psy2685 82 QRK---CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN---CICVLTG-HNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 82 t~~---~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~---~i~~l~~-h~~~V~sl~fspdg~~L~sgs 154 (992)
+++ ....+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ....+.+ |...|.+++|+|+++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 877 667778899999999999999999999999999999999877 4677887 999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy2685 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 155 ~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~ 234 (992)
.|++|++||+........... ..|............+ +|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEA--------SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCS--------CSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CCCEEEEEEEEecccCCCccc--------cccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999864332111000 0000000011234445 8999999999999999999999999999998776
Q ss_pred CeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcce
Q psy2685 235 RTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPA 314 (992)
Q Consensus 235 ~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~ 314 (992)
++.. ...+..+..|...|.+++|+|++++|++|+++++++|+.......
T Consensus 237 ~~~~-------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (377)
T 3dwl_C 237 PEQP-------------------------------PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWA 285 (377)
T ss_dssp TTSC-------------------------------EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---C
T ss_pred CCCc-------------------------------ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceE
Confidence 5421 011445667888999999999999999999999999987633211
Q ss_pred EEe--e--c---------------c---EE-EEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCC-C---EEE
Q psy2685 315 YTV--H--N---------------N---VM-YYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATE-H---SIL 367 (992)
Q Consensus 315 ~~~--~--~---------------~---~v-~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg-~---~la 367 (992)
+.. . . . .+ +.......+..+..... .....+...|...|.++++.+.+ . .++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~ 364 (377)
T 3dwl_C 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS-QSISSLPTVHQNMIATLRPYAGTPGNITAFT 364 (377)
T ss_dssp CSBCCCSCCCCCCBSSSSSBCCCCCC--------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEE
T ss_pred EEeeecccccccccccccccccccccccccccccccccccchhhcccc-ccccccCccccceeEEEeccCCCCCceEEEE
Confidence 000 0 0 0 00 00000111112221111 01222334588999999976554 3 577
Q ss_pred EEecCCccccCCeEEEEEe
Q psy2685 368 VTTRNANNFENSTYDLYMI 386 (992)
Q Consensus 368 v~~~~~~~~~~g~i~i~~l 386 (992)
+++.+ |.+++|++
T Consensus 365 s~g~D------g~i~iWdl 377 (377)
T 3dwl_C 365 SSGTD------GRVVLWTL 377 (377)
T ss_dssp EEETT------SEEEEECC
T ss_pred eecCC------CcEEEecC
Confidence 77664 99999974
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.5e-32 Score=299.78 Aligned_cols=255 Identities=15% Similarity=0.261 Sum_probs=212.6
Q ss_pred CcEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCC--CeEEEEeccCCCCEEEEEEecC--CCEEEEEECCCeEE
Q psy2685 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRM--NTLLEKFDEHEGPVRGICFHNQ--QPIFVSGGDDYKIK 76 (992)
Q Consensus 1 ml~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~--g~~~~~~~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~ 76 (992)
|+..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+ ++.+..+.+|.++|.+++|+|+ +++|++|+.||+|+
T Consensus 1 ~~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp -CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred CceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 6788999999999999999999999999999999999874 3677889999999999999864 88999999999999
Q ss_pred EEEcCCCe--EEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEEEECCCCe--eEEEEecCCCCeEEEEEecC----
Q psy2685 77 VWNYKQRK--CIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRIWNWQSRN--CICVLTGHNHYVMCAQFHPT---- 146 (992)
Q Consensus 77 VWd~~t~~--~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~vwdl~t~~--~i~~l~~h~~~V~sl~fspd---- 146 (992)
+||+.+++ .+..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 55677889999999999997 8899999999999999998753 24677899999999999997
Q ss_pred ---------CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC--
Q psy2685 147 ---------DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS-- 215 (992)
Q Consensus 147 ---------g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg-- 215 (992)
++.|++|+.|++|++||+++.... ......+.+|...|.+++|+|++
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----------------------~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------------YVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTE----------------------EEEEEEECCCSSCEEEEEECCCCSS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----------------------EEEEEEecCCCCceEEEEECCCCCC
Confidence 469999999999999998653210 01445688999999999999984
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEe--ecCCCCEEEEEEeCCC
Q psy2685 216 -EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTF--RREQERFWVLVAHPTL 292 (992)
Q Consensus 216 -~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l--~~h~~~V~~la~spdg 292 (992)
.+|++++.|++|++||+.++... .....+ ..|...|++++|+|++
T Consensus 219 ~~~las~s~D~~v~iWd~~~~~~~--------------------------------~~~~~~~~~~~~~~v~~~~~s~~g 266 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNEQGP--------------------------------WKKTLLKEEKFPDVLWRASWSLSG 266 (297)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSC--------------------------------CEEEESSSSCCSSCEEEEEECSSS
T ss_pred ceEEEEEECCCcEEEEEeCCCCCc--------------------------------cceeeeecccCCCcEEEEEECCCC
Confidence 89999999999999987643200 001111 3567789999999999
Q ss_pred CEEEEEECCC-EEEEEec
Q psy2685 293 NLFAAGHDAG-MVVFKFE 309 (992)
Q Consensus 293 ~~Lasgsddg-iivw~l~ 309 (992)
++||+|+.|+ +.+|+..
T Consensus 267 ~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 267 NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEEcCCCcEEEEEEC
Confidence 9999998776 4466653
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.1e-31 Score=294.16 Aligned_cols=298 Identities=20% Similarity=0.321 Sum_probs=248.6
Q ss_pred CCCeEEEEeccCCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCC-----eEEEEEccCCCCEEEEEEecCCCEEEEEE
Q psy2685 39 RMNTLLEKFDEHEGPVRGICFHNQ-QPIFVSGGDDYKIKVWNYKQR-----KCIFTLLGHLDYIRTTFFHHEYPWILSAS 112 (992)
Q Consensus 39 ~~g~~~~~~~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~VWd~~t~-----~~~~~l~~h~~~V~~i~fspd~~~L~sgs 112 (992)
++.++..++++|.+.|++|+|+|+ +++|+||+.||+|+|||+.++ .+...+.+|...|.+++|+|++.+|++|+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 444566789999999999999998 579999999999999998754 35677899999999999999999999999
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCc
Q psy2685 113 DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSK 192 (992)
Q Consensus 113 ~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~ 192 (992)
.|+.|++|+............+...+....++++++.+++++.|+.+++||.....
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~------------------------ 161 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC------------------------ 161 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------------------------
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc------------------------
Confidence 99999999999999999999999999999999999999999999999999986532
Q ss_pred ceEEEEEeccCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEE
Q psy2685 193 AWEVDIFRGHYNNVSCVLFHPKS--EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIR 263 (992)
Q Consensus 193 ~~~i~~l~~h~~~V~~v~fspdg--~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~ 263 (992)
.......+|...+.++.|++++ .++++++.|+.|++||+.+++.+..+..|...+. +.++++|+.|+.|+
T Consensus 162 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~ 240 (340)
T 4aow_A 162 -KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAM 240 (340)
T ss_dssp -EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred -eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 1334456789999999999865 5789999999999999999999999988876653 37999999999999
Q ss_pred EEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEE
Q psy2685 264 LWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVV 343 (992)
Q Consensus 264 vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v 343 (992)
+||+.+.+.+..+..+ ..+.++.|+|++.+++++.++.+.+|++........... .. .
T Consensus 241 iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------------------~~---~ 298 (340)
T 4aow_A 241 LWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ------------------EV---I 298 (340)
T ss_dssp EEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC------------------C-----
T ss_pred EEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc------------------cc---e
Confidence 9999999998888654 689999999999999888887777887655433221111 10 1
Q ss_pred EEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 344 MQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 344 ~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
......|...|.+++|+|||++|++++.+ |.+++|++...
T Consensus 299 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------g~v~iW~~~tG 338 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSADGQTLFAGYTD------NLVRVWQVTIG 338 (340)
T ss_dssp -----CCCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEC-
T ss_pred eeeccCCCCCEEEEEECCCCCEEEEEeCC------CEEEEEeCCCc
Confidence 11113567889999999999999998765 99999998754
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=305.31 Aligned_cols=281 Identities=15% Similarity=0.243 Sum_probs=234.5
Q ss_pred EEeecCCCCEEEEEEcCCCCEEE-EEEc---CCeEEEEEcCCCeEEEEe-ccCCCCEEEEEEecC---CCEEEEEECCCe
Q psy2685 3 TKFETKSARVKGLSFHPKRPWIL-SSLH---NGVIQLWDYRMNTLLEKF-DEHEGPVRGICFHNQ---QPIFVSGGDDYK 74 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~La-sg~~---dg~I~IWd~~~g~~~~~~-~~h~~~V~~l~fspd---g~~Lasgs~Dg~ 74 (992)
..+.+|.+.|++++|+|+++.++ +|+. ||.|++||+.+++..... ..|..+|.+++|+|+ +++|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 34678999999999999997555 5554 899999999988765443 368999999999999 699999999999
Q ss_pred EEEEEcCCCe-EEEEEccCCCCEEEEEE------ecCCCEEEEEECCCeEEEEECCCCe-eEEEEecCCC----CeEEEE
Q psy2685 75 IKVWNYKQRK-CIFTLLGHLDYIRTTFF------HHEYPWILSASDDQTIRIWNWQSRN-CICVLTGHNH----YVMCAQ 142 (992)
Q Consensus 75 I~VWd~~t~~-~~~~l~~h~~~V~~i~f------spd~~~L~sgs~Dg~I~vwdl~t~~-~i~~l~~h~~----~V~sl~ 142 (992)
|++||+.+++ ....+.+|...|.++.| +|++++|++|+.||.|++||+++++ .+..+..|.. .+.+++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999888 88889999999999965 6789999999999999999999887 7788876655 799998
Q ss_pred ----EecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC---CC
Q psy2685 143 ----FHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP---KS 215 (992)
Q Consensus 143 ----fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp---dg 215 (992)
|+|+++++++++.||.|++||+++.. ......|...|.++.|+| ++
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------------------------LRWETNIKNGVCSLEFDRKDISM 224 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTE---------------------------EEEEEECSSCEEEEEESCSSSSC
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCc---------------------------eeeecCCCCceEEEEcCCCCCCC
Confidence 78899999999999999999997632 233467888999999999 99
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeEee-----ccCccccc-------C-EEEEEeCCCeEEEEECCCC------------
Q psy2685 216 EVIVSNAEDKSIRLWDMTKRTCLNTFR-----REQERFWS-------E-VIVSNAEDKSIRLWDMTKR------------ 270 (992)
Q Consensus 216 ~~L~s~s~Dg~I~vwdl~~~~~l~~~~-----~~~~~~~s-------~-~l~sgs~Dg~I~vwd~~t~------------ 270 (992)
.++++++.||.|++||+.+++....+. .+...+.+ . ++++++.||.|++||+.++
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 999999999999999998877655544 56555432 3 8999999999999998754
Q ss_pred -------eEEEEeecCCCCEEEEEEeCCCCEEE-EEECCCE-EEEEecC
Q psy2685 271 -------TCLNTFRREQERFWVLVAHPTLNLFA-AGHDAGM-VVFKFER 310 (992)
Q Consensus 271 -------~~v~~l~~h~~~V~~la~spdg~~La-sgsddgi-ivw~l~~ 310 (992)
+.+..+..|...|++++|+|++++|+ +|+.|+. .+|++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 46778889999999999999999888 7876654 4666543
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-32 Score=310.39 Aligned_cols=274 Identities=16% Similarity=0.262 Sum_probs=245.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCI 86 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~ 86 (992)
+|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 3788999999999999999999999999999 778889999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC---------------EEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEE
Q psy2685 87 FTLLGHLDY---------------IRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 151 (992)
Q Consensus 87 ~~l~~h~~~---------------V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~ 151 (992)
..+..+... +.++.|+|++ .+++++.||.|++||+++++.+..+.+|...|.+++|+|++++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 999888777 9999999985 588999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy2685 152 SASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231 (992)
Q Consensus 152 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwd 231 (992)
+++.||.|++||++... ....+.+|...|.++.|+|++ ++++++.|+.|++||
T Consensus 264 ~~~~d~~i~i~d~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGN--------------------------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp EEETTSCEEEECSSSBS--------------------------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred EEcCCCEEEEEECCCCc--------------------------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence 99999999999987642 334567899999999999999 999999999999999
Q ss_pred CCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEECCCCe--------------------EEEEeecCCC--C
Q psy2685 232 MTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDMTKRT--------------------CLNTFRREQE--R 282 (992)
Q Consensus 232 l~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~--------------------~v~~l~~h~~--~ 282 (992)
+.+++.+..+..+...+. +.++++++.||.|++||+.++. .+..+..|.. .
T Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (425)
T 1r5m_A 317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396 (425)
T ss_dssp TTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred CCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence 999999988887765543 3799999999999999999888 8889998876 9
Q ss_pred EEEEEEeCCCCEEEEEECCC-EEEEEec
Q psy2685 283 FWVLVAHPTLNLFAAGHDAG-MVVFKFE 309 (992)
Q Consensus 283 V~~la~spdg~~Lasgsddg-iivw~l~ 309 (992)
|.+++|+|++++|++|+.+| +.+|+++
T Consensus 397 v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999988776 5567653
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=318.21 Aligned_cols=278 Identities=14% Similarity=0.287 Sum_probs=231.2
Q ss_pred cEEe-ecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEEcCC---Ce---EEEEeccCCCCEEEEEEecCCCEEEEEECCC
Q psy2685 2 LTKF-ETKSARVKGLSFHP-KRPWILSSLHNGVIQLWDYRM---NT---LLEKFDEHEGPVRGICFHNQQPIFVSGGDDY 73 (992)
Q Consensus 2 l~~l-~~H~~~V~~iafsp-dg~~Lasg~~dg~I~IWd~~~---g~---~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg 73 (992)
+.++ ++|.+.|++++|+| ++++|++|+.||.|++||+.+ +. ....+ .|.++|.+++|+|+++.|++|+.||
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 4567 89999999999999 999999999999999999876 43 22333 4899999999999999999999999
Q ss_pred eEEEEEcC---CCeEEEEEcc------------CCCCEEEEE--EecCCCEEEEEECCCeEEEEECCCCeeEEEEec--C
Q psy2685 74 KIKVWNYK---QRKCIFTLLG------------HLDYIRTTF--FHHEYPWILSASDDQTIRIWNWQSRNCICVLTG--H 134 (992)
Q Consensus 74 ~I~VWd~~---t~~~~~~l~~------------h~~~V~~i~--fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~--h 134 (992)
.|++||+. +++....... +...+.++. +++++.++++|+.||.|++||+++++++..+.+ |
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 99999994 5544443322 456677777 567899999999999999999999999999998 8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe-ccCCCeEEEEEcC
Q psy2685 135 NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-GHYNNVSCVLFHP 213 (992)
Q Consensus 135 ~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-~h~~~V~~v~fsp 213 (992)
...|++++|+|+++++++|+.||+|++||++... .+..+. .|...|.+++|+|
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV--------------------------LIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--------------------------EEEEEBCTTCEEEEEEEECT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc--------------------------EEEEEecCCCCceEEEEecc
Confidence 9999999999999999999999999999997632 444444 6778899996665
Q ss_pred ----CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc--------------------------------cCEEEEEe
Q psy2685 214 ----KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW--------------------------------SEVIVSNA 257 (992)
Q Consensus 214 ----dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~--------------------------------s~~l~sgs 257 (992)
++.+|++++.|+.|++||+.+++++..+..+..... +.++++++
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~ 347 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDE 347 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEG
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecC
Confidence 677999999999999999999998888876532111 25899999
Q ss_pred CCCeEEEEECCCCeEEEEeec-------------------------------------CCCCEEEEEEeCC--CCEEEEE
Q psy2685 258 EDKSIRLWDMTKRTCLNTFRR-------------------------------------EQERFWVLVAHPT--LNLFAAG 298 (992)
Q Consensus 258 ~Dg~I~vwd~~t~~~v~~l~~-------------------------------------h~~~V~~la~spd--g~~Lasg 298 (992)
.|+.|++||+.+++....+.+ |.+.|++++|+++ +.+|++|
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999999887776655 7788899999887 7788888
Q ss_pred ECCCEE-EE
Q psy2685 299 HDAGMV-VF 306 (992)
Q Consensus 299 sddgii-vw 306 (992)
+.+|.+ +|
T Consensus 428 ~~dG~I~iw 436 (437)
T 3gre_A 428 DNSGLIGIF 436 (437)
T ss_dssp ETTSCEEEE
T ss_pred cCCceEEEe
Confidence 887755 44
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-32 Score=313.54 Aligned_cols=275 Identities=16% Similarity=0.203 Sum_probs=232.8
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
..+....|+|++++|++|+.||.|++||+.+++....+..|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 34555578999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec---CCCCeEEEE---------------------Eec
Q psy2685 90 LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTG---HNHYVMCAQ---------------------FHP 145 (992)
Q Consensus 90 ~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~---h~~~V~sl~---------------------fsp 145 (992)
.+|.+.|.+++|+|++++|++|+.||.|++||+++++++..+.. |...+.+++ |+|
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999999998875 344455544 578
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCC
Q psy2685 146 TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAED 224 (992)
Q Consensus 146 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s~D 224 (992)
+++++++|+.||.|++||+++... ......+|...|.+++|+|++. +|++++.|
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQ-------------------------TIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCE-------------------------EEEECCTTSSCEEEEEECSSCTTEEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECCCCce-------------------------eEEcccccCCCceeEEEeCCCCCEEEEEeCC
Confidence 899999999999999999976431 2333456889999999999998 99999999
Q ss_pred CeEEEEECCCCe-eeeEeeccC-cccc------cCEEEEEeCCCeEEEEECCCC---------eEEEEeecCCCCEEEEE
Q psy2685 225 KSIRLWDMTKRT-CLNTFRREQ-ERFW------SEVIVSNAEDKSIRLWDMTKR---------TCLNTFRREQERFWVLV 287 (992)
Q Consensus 225 g~I~vwdl~~~~-~l~~~~~~~-~~~~------s~~l~sgs~Dg~I~vwd~~t~---------~~v~~l~~h~~~V~~la 287 (992)
|.|++||+.++. ++..+..+. ..+. +.++++++.|+.|++||+.+. .....+..+.+.+.+++
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 999999999874 466666533 3322 368999999999999998763 12234557788999999
Q ss_pred EeCCCC----EEEEEECCCEEEEEec
Q psy2685 288 AHPTLN----LFAAGHDAGMVVFKFE 309 (992)
Q Consensus 288 ~spdg~----~Lasgsddgiivw~l~ 309 (992)
|+|++. ++++|+++.+.+|+++
T Consensus 393 ~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 393 YVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EccCCCCcceEEEEcCCceEEEEecc
Confidence 999999 6777766666677764
No 63
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-31 Score=298.68 Aligned_cols=285 Identities=13% Similarity=0.189 Sum_probs=224.8
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC----eEEEEeccCCCCEEEEEEec--CCCEEEEEECCCeEE
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHN--QQPIFVSGGDDYKIK 76 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g----~~~~~~~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~ 76 (992)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|.++|.+++|+| ++++|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 467899999999999999999999999999999999876 57778889999999999999 699999999999999
Q ss_pred EEEcCCC---------eEEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEEEECCCCeeEEEEe-------------
Q psy2685 77 VWNYKQR---------KCIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRIWNWQSRNCICVLT------------- 132 (992)
Q Consensus 77 VWd~~t~---------~~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~vwdl~t~~~i~~l~------------- 132 (992)
+||+.++ +....+.+|.+.|.+++|+|+ +.++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 678888999999999999999 9999999999999999998876543322
Q ss_pred cCCCCeEEEEEecC---CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEE
Q psy2685 133 GHNHYVMCAQFHPT---DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCV 209 (992)
Q Consensus 133 ~h~~~V~sl~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v 209 (992)
+|...+.+++|+|+ +..+++++.|+.+.+|+...... .....+.+|...|.++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL------------------------HVAAKLPGHKSLIRSI 220 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE------------------------EEEEECCCCCSCEEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce------------------------eeeeecCCCCcceeEE
Confidence 57889999999997 89999999999997777654321 2466778899999999
Q ss_pred EEcCCC----CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-----------cCEEEEEeCCCeEEEEECCCCeEEE
Q psy2685 210 LFHPKS----EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-----------SEVIVSNAEDKSIRLWDMTKRTCLN 274 (992)
Q Consensus 210 ~fspdg----~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-----------s~~l~sgs~Dg~I~vwd~~t~~~v~ 274 (992)
+|+|++ ++|++++.||.|++||+.++.............. ......+.....+.+|+..+.+.+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 999998 8999999999999999987543322221111100 0112223345556677777778888
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEECCC-EEEEEecCC
Q psy2685 275 TFRREQERFWVLVAHPTLNLFAAGHDAG-MVVFKFERE 311 (992)
Q Consensus 275 ~l~~h~~~V~~la~spdg~~Lasgsddg-iivw~l~~~ 311 (992)
.+.+|...|++++|+|++++|++|+.|| +.+|++...
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999999998776 446655443
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=313.48 Aligned_cols=287 Identities=18% Similarity=0.357 Sum_probs=229.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-----------EEEEeccCC------------CCEEEEEEecCC-
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT-----------LLEKFDEHE------------GPVRGICFHNQQ- 63 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~-----------~~~~~~~h~------------~~V~~l~fspdg- 63 (992)
|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 56899999999999999999999999999998876 578888998 889999999998
Q ss_pred -CEEEEEECCCeEEEEEcCCCeEE---------------------------------------EE-EccCCCCEEEEEEe
Q psy2685 64 -PIFVSGGDDYKIKVWNYKQRKCI---------------------------------------FT-LLGHLDYIRTTFFH 102 (992)
Q Consensus 64 -~~Lasgs~Dg~I~VWd~~t~~~~---------------------------------------~~-l~~h~~~V~~i~fs 102 (992)
..|++++.||.|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998765432 12 35799999999999
Q ss_pred cCCCEEEEEECCCeEEEEECCC-CeeEEE-------EecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCcccccc
Q psy2685 103 HEYPWILSASDDQTIRIWNWQS-RNCICV-------LTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVA 173 (992)
Q Consensus 103 pd~~~L~sgs~Dg~I~vwdl~t-~~~i~~-------l~~h~~~V~sl~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~ 173 (992)
|++++|++| .|+.|++||+++ ++.+.. +.+|...|.+++|+|++ +++++|+.||+|++||+++.....
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-- 263 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD-- 263 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC--
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc--
Confidence 999999998 899999999984 444442 45799999999999998 999999999999999998754210
Q ss_pred CCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeeEeeccCc------
Q psy2685 174 PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK-RTCLNTFRREQE------ 246 (992)
Q Consensus 174 ~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~-~~~l~~~~~~~~------ 246 (992)
..+..+...... .....+.+|...|.+++|+|++++|++++. +.|++||+.+ ++++..+..+..
T Consensus 264 -------~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 264 -------RHSKLFEEPEDP-SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp -------TTCEEECCC------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred -------ceeeEeccCCCc-cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence 001111111100 011112234459999999999999999999 9999999997 888888877653
Q ss_pred -------------ccc---cCEEEEEeCCCeEEEEECCCCeEEEEee---------------------------------
Q psy2685 247 -------------RFW---SEVIVSNAEDKSIRLWDMTKRTCLNTFR--------------------------------- 277 (992)
Q Consensus 247 -------------~~~---s~~l~sgs~Dg~I~vwd~~t~~~v~~l~--------------------------------- 277 (992)
..+ +.++++|+.||.|++||+.+++.+. +.
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccc
Confidence 112 3789999999999999999988753 22
Q ss_pred cCCCCEEEEEEeCCCCEEEEEECCCEEEEE
Q psy2685 278 REQERFWVLVAHPTLNLFAAGHDAGMVVFK 307 (992)
Q Consensus 278 ~h~~~V~~la~spdg~~Lasgsddgiivw~ 307 (992)
.+...|..++|||++++||+++.+++.+|.
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~~~~~~ 443 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNNLYIFQ 443 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSCEEEEE
T ss_pred ccCCceeEEEECCCCCEEEEEecceeeeec
Confidence 223468899999999999999999998885
No 65
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-30 Score=292.82 Aligned_cols=308 Identities=14% Similarity=0.185 Sum_probs=254.3
Q ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEEC
Q psy2685 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNW 122 (992)
Q Consensus 43 ~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl 122 (992)
....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCEEEEEECC-----CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 123 QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD-----QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 123 ~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
.+++++..+. |...|.+++|+|+++.+++++.+ |.|++||+....... .+... . . ....
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~----------~~~~~--~-~--~~~~ 167 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH----------ELTKV--S-E--EPIH 167 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC----------CEEEE--C-S--SCSE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce----------eeccc--c-c--ceee
Confidence 9999998888 88999999999999999999999 999999987543211 11111 1 1 1234
Q ss_pred EEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEEC
Q psy2685 198 IFRGHYN--NVSCVLFHPKSEVIVSNAEDKSIRLWDMTK-RTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDM 267 (992)
Q Consensus 198 ~l~~h~~--~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~-~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~ 267 (992)
.+..|.+ .+.+++|+|++++|++++.||.|++||+.+ +..+..+..+...+. +..+++++.|+.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 4556666 899999999999999999999999999999 788888887766543 378999999999999999
Q ss_pred CCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE-EEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEe
Q psy2685 268 TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV-VFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQL 346 (992)
Q Consensus 268 ~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgii-vw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l 346 (992)
.+++.+..+. +...+.+++|+|+++++++++.++.. +|..... .....+++||+.+++.... +
T Consensus 248 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~i~~~d~~~~~~~~~--~ 311 (369)
T 3zwl_B 248 STLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN-------------EGKFEARFYHKIFEEEIGR--V 311 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC--------------------------CEEEEEETTTCCEEEE--E
T ss_pred CCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecC-------------CCcceeEEEecCCCcchhh--e
Confidence 9999988887 67889999999999999998866533 3332211 1223688899877664433 3
Q ss_pred ecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 347 RGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 347 ~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
.+|...|.+++|+|+++++++++.+ |.+++|++...
T Consensus 312 -~~~~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~ 347 (369)
T 3zwl_B 312 -QGHFGPLNTVAISPQGTSYASGGED------GFIRLHHFEKS 347 (369)
T ss_dssp -ECCSSCEEEEEECTTSSEEEEEETT------SEEEEEEECHH
T ss_pred -ecccCcEEEEEECCCCCEEEEEcCC------CeEEEEECccc
Confidence 3578899999999999999999865 99999998754
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-30 Score=291.75 Aligned_cols=305 Identities=19% Similarity=0.298 Sum_probs=228.1
Q ss_pred eEEEEeccCCCCEEEEEE-----ec-CCCEEEEEECCCeEEEEEcCC-------CeEEEEEccCCCCEEEEEEecCCCEE
Q psy2685 42 TLLEKFDEHEGPVRGICF-----HN-QQPIFVSGGDDYKIKVWNYKQ-------RKCIFTLLGHLDYIRTTFFHHEYPWI 108 (992)
Q Consensus 42 ~~~~~~~~h~~~V~~l~f-----sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~V~~i~fspd~~~L 108 (992)
+....+++|.+.|++++| ++ ++++|++|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 356678899999999999 76 899999999999999999864 35667889999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEc
Q psy2685 109 LSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRM 188 (992)
Q Consensus 109 ~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~ 188 (992)
++|+.|++|++||+++++++..+.+|...|.+++|+|+++++++++.|++|++||+.+....
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~------------------ 153 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF------------------ 153 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE------------------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee------------------
Confidence 99999999999999999999999999999999999999999999999999999998642110
Q ss_pred cCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECC
Q psy2685 189 NDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMT 268 (992)
Q Consensus 189 ~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~ 268 (992)
......+|...|.++.|+|++.... .....+.++++++.|+.|++|| .
T Consensus 154 ------~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~~~~~~~~l~s~~~d~~i~iwd-~ 201 (343)
T 2xzm_R 154 ------SSAEKENHSDWVSCVRYSPIMKSAN-------------------------KVQPFAPYFASVGWDGRLKVWN-T 201 (343)
T ss_dssp ------ECCTTTSCSSCEEEEEECCCCCSCS-------------------------CCCSSCCEEEEEETTSEEEEEE-T
T ss_pred ------eeecccCCCceeeeeeecccccccc-------------------------ccCCCCCEEEEEcCCCEEEEEc-C
Confidence 0011236888999999999862100 0001123444555555555555 3
Q ss_pred CCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeec
Q psy2685 269 KRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRG 348 (992)
Q Consensus 269 t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~ 348 (992)
+......+..|...|.+++|+|+|++|++|+.|+.+ ++||+...... ...+.
T Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v--------------------------~iwd~~~~~~~-~~~~~- 253 (343)
T 2xzm_R 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL--------------------------LIWDILNLTYP-QREFD- 253 (343)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE--------------------------EEEESSCCSSC-SEEEE-
T ss_pred CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE--------------------------EEEECCCCccc-ceeec-
Confidence 345566778899999999999999999999877644 33555222111 11111
Q ss_pred CCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceec-----------cCccccceEEEEecCC-eEE
Q psy2685 349 GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA-----------DGKRSTGISAVWVARN-RFA 416 (992)
Q Consensus 349 ~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~-----------~~~~~~~~s~~w~~~~-~~a 416 (992)
+...|.+++|+|++.+++++++ +.+++|++........... ..+...+.++.|++++ .++
T Consensus 254 -~~~~v~~v~~sp~~~~la~~~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 254 -AGSTINQIAFNPKLQWVAVGTD-------QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp -CSSCEEEEEECSSSCEEEEEES-------SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred -CCCcEEEEEECCCCCEEEEECC-------CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 2346899999999999886654 5899999865433111011 1344557788999876 455
Q ss_pred EEEcCCeEEEEEcCCc
Q psy2685 417 VLDRNHTILIKNLKNE 432 (992)
Q Consensus 417 v~~~~g~I~i~dl~~~ 432 (992)
++..+|+|.+|++++.
T Consensus 326 sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 326 AGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEETTSEEEEEEEEEE
T ss_pred EecCCceEEEEEEEcc
Confidence 6677999999998653
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-30 Score=300.33 Aligned_cols=277 Identities=20% Similarity=0.391 Sum_probs=229.9
Q ss_pred cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCC------------------CEEEEEEecCCCEEEE
Q psy2685 49 EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD------------------YIRTTFFHHEYPWILS 110 (992)
Q Consensus 49 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------------------~V~~i~fspd~~~L~s 110 (992)
.|.+.|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999976 68999999999998887765532 4999999999999999
Q ss_pred EECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccC
Q psy2685 111 ASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMND 190 (992)
Q Consensus 111 gs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~ 190 (992)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||+++..
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---------------------- 198 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---------------------- 198 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----------------------
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe----------------------
Confidence 9999999999999999999999999999999999999999999999999999997632
Q ss_pred CcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEee-------ccCcccc-------cCEEEE
Q psy2685 191 SKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTKRTCLNTFR-------REQERFW-------SEVIVS 255 (992)
Q Consensus 191 ~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~-------~~~~~~~-------s~~l~s 255 (992)
....+ .+...+.+++|+| ++++|++++.|+.|++||+.++..+..+. .|...+. +..+++
T Consensus 199 ----~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 199 ----CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp ----EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred ----eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 22222 3566799999999 89999999999999999999988777663 3444332 378999
Q ss_pred EeCCCeEEEEECCCC------------eEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEE
Q psy2685 256 NAEDKSIRLWDMTKR------------TCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMY 323 (992)
Q Consensus 256 gs~Dg~I~vwd~~t~------------~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~ 323 (992)
++.|+.|++||+.+. .+..++.+|.+.|.+++|+|++.+|++|+.|+.+
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v------------------- 334 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV------------------- 334 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE-------------------
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE-------------------
Confidence 999999999999753 3456778899999999999999999999887654
Q ss_pred EEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEcc------CCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 324 YVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA------TEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 324 ~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafsp------dg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
++||..+++. +..+ .+|...|.+++|+| ++..+++++.+ |++++|++..
T Consensus 335 -------~iwd~~~~~~--~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D------g~i~iW~~~~ 389 (393)
T 1erj_A 335 -------LFWDKKSGNP--LLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYKK 389 (393)
T ss_dssp -------EEEETTTCCE--EEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEEE
T ss_pred -------EEEECCCCeE--EEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEECCC------CcEEECcccc
Confidence 3467655543 2333 35788899999876 68889988765 9999999864
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=317.25 Aligned_cols=279 Identities=15% Similarity=0.291 Sum_probs=239.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCC----CeEEEEeccCCCCEEEEEEecC-CCEEEEEECCCeEEEEEcC
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRM----NTLLEKFDEHEGPVRGICFHNQ-QPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~----g~~~~~~~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~VWd~~ 81 (992)
.|...|++++|+|++++|++|+.||.|++||+.+ .+.+..+..|.+.|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5888999999999999999999999999999987 4588889999999999999998 8899999999999999998
Q ss_pred CCe------EEEE---EccCCCCEEEEEEecC-CCEEEEEECCCeEEEEECCCCeeEEEEecC------CCCeEEEEEec
Q psy2685 82 QRK------CIFT---LLGHLDYIRTTFFHHE-YPWILSASDDQTIRIWNWQSRNCICVLTGH------NHYVMCAQFHP 145 (992)
Q Consensus 82 t~~------~~~~---l~~h~~~V~~i~fspd-~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h------~~~V~sl~fsp 145 (992)
+++ .... ...|...|.+++|+|+ +.++++++.||.|++||+++++.+..+..| ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 3322 3679999999999999 789999999999999999999999998877 78999999999
Q ss_pred CC-CEEEEEECCC---eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe-ccCCCeEEEEEcC-CCCEEE
Q psy2685 146 TD-DIVVSASLDQ---TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-GHYNNVSCVLFHP-KSEVIV 219 (992)
Q Consensus 146 dg-~~L~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-~h~~~V~~v~fsp-dg~~L~ 219 (992)
++ .++++++.|+ .|++||++.... +...+. +|...|.+++|+| ++.+|+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~-------------------------~~~~~~~~~~~~v~~~~~s~~~~~~l~ 279 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANT-------------------------PLQTLNQGHQKGILSLDWCHQDEHLLL 279 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTS-------------------------CSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCC-------------------------CcEEeecCccCceeEEEeCCCCCCeEE
Confidence 97 6999999998 999999876421 233455 7999999999999 999999
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeccCcccc-------c-CEEEEEeCCCeEEEEECCCCeEEEEee--------------
Q psy2685 220 SNAEDKSIRLWDMTKRTCLNTFRREQERFW-------S-EVIVSNAEDKSIRLWDMTKRTCLNTFR-------------- 277 (992)
Q Consensus 220 s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s-~~l~sgs~Dg~I~vwd~~t~~~v~~l~-------------- 277 (992)
+++.|+.|++||+.+++++..+..|...+. + .++++++.|+.|++||+.++.......
T Consensus 280 s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 280 SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred EEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 999999999999999999999988776553 2 689999999999999998765322111
Q ss_pred ---------------------cCCCCEEEEEEeCCCCEEEEEECCC-EEEEEecC
Q psy2685 278 ---------------------REQERFWVLVAHPTLNLFAAGHDAG-MVVFKFER 310 (992)
Q Consensus 278 ---------------------~h~~~V~~la~spdg~~Lasgsddg-iivw~l~~ 310 (992)
.+..++.+++|+|+|++|++|+.++ +.+|++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1556778999999999999998766 44776654
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-30 Score=321.61 Aligned_cols=305 Identities=21% Similarity=0.343 Sum_probs=244.6
Q ss_pred EEEEeccCCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCC-----CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCe
Q psy2685 43 LLEKFDEHEGPVRGICFHNQQ-PIFVSGGDDYKIKVWNYKQ-----RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQT 116 (992)
Q Consensus 43 ~~~~~~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~ 116 (992)
....+++|.+.|++++|+|++ ++|++|+.||+|++||+.+ +.....+.+|...|.+++|+|++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445688999999999999875 6999999999999999875 3556788999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEE
Q psy2685 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEV 196 (992)
Q Consensus 117 I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i 196 (992)
|++||+.+++++..+.+|...|.+++|+|+++.|++|+.|++|++||..+..... ..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-----------------------~~ 510 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-----------------------IS 510 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-----------------------EC
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-----------------------ec
Confidence 9999999999999999999999999999999999999999999999976421100 00
Q ss_pred EEEeccCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEEEC
Q psy2685 197 DIFRGHYNNVSCVLFHPKS--EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLWDM 267 (992)
Q Consensus 197 ~~l~~h~~~V~~v~fspdg--~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vwd~ 267 (992)
....+|...|.+++|+|++ ..+++++.|++|++||+.+++....+..|...+. +.++++++.||.|++||+
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 0124688899999999987 6899999999999999999999999988876654 379999999999999999
Q ss_pred CCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEee
Q psy2685 268 TKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR 347 (992)
Q Consensus 268 ~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~ 347 (992)
.+++.+..+.. ...+.+++|+|++.++++++++++.+|++.+............... ...+.. + +. ..
T Consensus 591 ~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~-~---~~--~~ 658 (694)
T 3dm0_A 591 AEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA-----EKADNS-G---PA--AT 658 (694)
T ss_dssp TTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-------------------------
T ss_pred CCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccc-----cccccc-c---cc--cC
Confidence 99998887754 4679999999999999999999999999877655433221100000 000000 0 00 00
Q ss_pred cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 348 GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 348 ~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
..+...+.+++|||+|++|++++.+ |.+++|++.+
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~D------g~i~iW~i~~ 693 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTD------GVIRVWGIGR 693 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETT------SEEEEEEC--
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCC------CeEEEEeccC
Confidence 1123346889999999999999875 9999999864
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-30 Score=301.22 Aligned_cols=273 Identities=14% Similarity=0.301 Sum_probs=232.1
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec--cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD--EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
...++||++ +.||+|. |++|+|||..+|+....+. .|...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 567999986 4788876 9999999999998877664 57788999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC-CeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q psy2685 90 LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS-RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR 168 (992)
Q Consensus 90 ~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t-~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~ 168 (992)
.+|...+.++.|+ +..+++|+.|+.+++||... ...+.++.+|...+.++.|+|+++.+++++.|+.+++|+.....
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 9999999988875 56899999999999999886 45667889999999999999999999999999999999987643
Q ss_pred cccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-EEEE--EeCCCeEEEEECCCCeeeeEeeccC
Q psy2685 169 KKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVS--NAEDKSIRLWDMTKRTCLNTFRREQ 245 (992)
Q Consensus 169 ~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s--~s~Dg~I~vwdl~~~~~l~~~~~~~ 245 (992)
... ........|...|.+++|+|++. ++++ |+.|++|++||+.++.+...+..+.
T Consensus 264 ~~~----------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~ 321 (420)
T 4gga_A 264 GGW----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 321 (420)
T ss_dssp SCS----------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred ccc----------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence 211 13455678999999999999654 5554 4579999999999999988887765
Q ss_pred cccc------cCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE-EEEecC
Q psy2685 246 ERFW------SEVIVSNA--EDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV-VFKFER 310 (992)
Q Consensus 246 ~~~~------s~~l~sgs--~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgii-vw~l~~ 310 (992)
.... +..+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.|+.+ +|++..
T Consensus 322 ~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 322 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 4322 25555544 79999999999999999999999999999999999999999887743 565543
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.1e-30 Score=281.63 Aligned_cols=274 Identities=14% Similarity=0.278 Sum_probs=228.2
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec--cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD--EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
..+++|||++ .||+|. |++|+|||+.+|+.+..+. .|...|++++|+|++++|++|+.||+|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 777765 9999999999999887764 57788999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCC-eeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q psy2685 90 LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR 168 (992)
Q Consensus 90 ~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~-~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~ 168 (992)
.+|...+.++.+ ++..+++|+.++.+++|+..+. ..+..+.+|...+.++.|+++++.+++++.||+|++||+++.+
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999998876655 5578999999999999998865 5667888999999999999999999999999999999997644
Q ss_pred cccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCE---EEEEeCCCeEEEEECCCCeeeeEeeccC
Q psy2685 169 KKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV---IVSNAEDKSIRLWDMTKRTCLNTFRREQ 245 (992)
Q Consensus 169 ~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~---L~s~s~Dg~I~vwdl~~~~~l~~~~~~~ 245 (992)
... ........|.+.|.++.++|++.. +++++.+++|++||..............
T Consensus 184 ~~~----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 184 GGW----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp TBS----------------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred ccc----------------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence 221 133445678889999999997653 3466788999999999887766655443
Q ss_pred cccc------cCEEEE--EeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE-EEEecCC
Q psy2685 246 ERFW------SEVIVS--NAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV-VFKFERE 311 (992)
Q Consensus 246 ~~~~------s~~l~s--gs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgii-vw~l~~~ 311 (992)
.... +..+++ |+.|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.|+.+ +|++...
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 3221 244444 4479999999999999999999999999999999999999999987744 6766543
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.7e-30 Score=299.03 Aligned_cols=273 Identities=24% Similarity=0.520 Sum_probs=244.4
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
+.++.+|.+.|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||+.
T Consensus 152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence 45788999999999998 5689999999999999999999999999999999999996 4679999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
+++.+..+.+|...|.++.| ++.++++|+.||.|++||+++++++..+.+|...|.++.| ++..+++|+.||+|++
T Consensus 228 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 303 (445)
T ss_dssp SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEE
Confidence 99999999999999999999 6788999999999999999999999999999999999999 7889999999999999
Q ss_pred EECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 162 wd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
||+++.+ ....+.+|...+.++.++ ++++++++.||.|++||+.+++.+..+
T Consensus 304 ~d~~~~~--------------------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 304 WDVETGN--------------------------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp EETTTCC--------------------------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EECCCCC--------------------------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9987642 456678899999988875 679999999999999999999998888
Q ss_pred ec---cCcccc-----cCEEEEEeCCCeEEEEECCCCeEEEEe-----ecCCCCEEEEEEeCCCCEEEEEECCC-----E
Q psy2685 242 RR---EQERFW-----SEVIVSNAEDKSIRLWDMTKRTCLNTF-----RREQERFWVLVAHPTLNLFAAGHDAG-----M 303 (992)
Q Consensus 242 ~~---~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~~v~~l-----~~h~~~V~~la~spdg~~Lasgsddg-----i 303 (992)
.. +...+. +.++++|+.||.|++||+.+++.+..+ ..+.+.|++++|+|++.++++|+.|| +
T Consensus 356 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred ccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 76 444332 489999999999999999999998888 46778899999999999999999888 4
Q ss_pred EEEEecC
Q psy2685 304 VVFKFER 310 (992)
Q Consensus 304 ivw~l~~ 310 (992)
.+|++..
T Consensus 436 ~v~df~~ 442 (445)
T 2ovr_B 436 LVLDFDV 442 (445)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 4565543
No 73
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=324.90 Aligned_cols=316 Identities=12% Similarity=0.174 Sum_probs=236.8
Q ss_pred CCCCEEEEEEcCCC---------CEEEEE-------------------EcCCeEEEEEcCCCeE----EEEeccCCCCEE
Q psy2685 8 KSARVKGLSFHPKR---------PWILSS-------------------LHNGVIQLWDYRMNTL----LEKFDEHEGPVR 55 (992)
Q Consensus 8 H~~~V~~iafspdg---------~~Lasg-------------------~~dg~I~IWd~~~g~~----~~~~~~h~~~V~ 55 (992)
+.+.|.+++|+|++ ++||+| +.|++|+|||+.+++. ...+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57789999999876 567664 4678999999987753 234666789999
Q ss_pred EEEEecC------CCEEEEEECCCeEEEEEcCCCeE-----------EEEEccCCCCEEEEEEecCCCEEEEEECCCeEE
Q psy2685 56 GICFHNQ------QPIFVSGGDDYKIKVWNYKQRKC-----------IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIR 118 (992)
Q Consensus 56 ~l~fspd------g~~Lasgs~Dg~I~VWd~~t~~~-----------~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~ 118 (992)
+++|+|+ +.+|++|+.||+|++||+.++.. ...+.+|...|++++|++++ .|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 9999997 57999999999999999976631 24678899999999999864 899999999999
Q ss_pred EEECCCC-eeEEEEecCCCCeEEE--EEecCC-CEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 119 IWNWQSR-NCICVLTGHNHYVMCA--QFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 119 vwdl~t~-~~i~~l~~h~~~V~sl--~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
+||++++ .+...+.+|...|+++ +|+|++ .+|++||.|++|++||+++.+.
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~------------------------- 345 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT------------------------- 345 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-------------------------
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-------------------------
Confidence 9999876 4556788999999999 578887 8999999999999999875432
Q ss_pred EEEEEeccC--CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCeEEEE
Q psy2685 195 EVDIFRGHY--NNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKSIRLW 265 (992)
Q Consensus 195 ~i~~l~~h~--~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~I~vw 265 (992)
...+.+|. ..|.+++|+|++..+++++.|++|++||++++.++.++.+|...++ +..+++|+.|++|++|
T Consensus 346 -~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 346 -TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp -HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred -ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 12234454 3588999999999999999999999999999988888888876664 3789999999999999
Q ss_pred ECCCCeEEEEeec-----CCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCc
Q psy2685 266 DMTKRTCLNTFRR-----EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKD 340 (992)
Q Consensus 266 d~~t~~~v~~l~~-----h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~ 340 (992)
|+..+ .+..... +...+++++|+|++..+.. .++..+|. |+.. +.
T Consensus 425 d~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~-------------------------~~~~-g~- 474 (524)
T 2j04_B 425 NAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSSYEVYP-------------------------LTVN-DV- 474 (524)
T ss_dssp BSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE--CCCCCCCC---------------------------------
T ss_pred echHh-hccccccCccceeeeEEEEeccCCCCCeEEc--cCCceecc-------------------------cccC-Cc-
Confidence 98654 2221111 1125789999999985532 22222211 1111 11
Q ss_pred eEEEEeecCCCccceeEEEccCCC---EEEEEecCCccccCCeEEEEEeCC
Q psy2685 341 SVVMQLRGGGRIPAHSISYNATEH---SILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 341 ~~v~~l~~~~~~~I~~lafspdg~---~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
....+ .+|...|++++|||++. .+|+++.+ |.++||.+..
T Consensus 475 -~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~------g~vrlw~l~~ 517 (524)
T 2j04_B 475 -SKAKI-DAHGINITCTKWNETSAGGKCYAFSNSA------GLLTLEYLSL 517 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTT------SEEEEEECSC
T ss_pred -ceeee-cCCCceEEEEECCCCCCccHHHHhhccC------ceEEEEEccc
Confidence 12223 35788999999999965 88887664 9999999764
No 74
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=271.63 Aligned_cols=176 Identities=38% Similarity=0.598 Sum_probs=163.5
Q ss_pred eccccccccceeeceeccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHH
Q psy2685 458 ALHFVKDDRTRLTLALECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLK 537 (992)
Q Consensus 458 al~~~~d~~~~F~~aL~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~ 537 (992)
++++++|+.++|++||++||++.|+++|+.++++..|++||+.||.+||+++||+||++++|+++|.|||.++|+.+++.
T Consensus 1 AL~~~~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 1 ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp CCTTSSCHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred CccccCChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhh
Q psy2685 538 KMMKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALL 617 (992)
Q Consensus 538 ~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~ 617 (992)
+|+.+| +.++|++.+++++++
T Consensus 81 kla~iA-----------------------------------------------------------~~~g~~n~af~~~l~ 101 (177)
T 3mkq_B 81 KMQNIA-----------------------------------------------------------QTREDFGSMLLNTFY 101 (177)
T ss_dssp HHHHHH-----------------------------------------------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHH-----------------------------------------------------------HHCccHHHHHHHHHH
Confidence 999999 899999999999999
Q ss_pred cCCHHHHHHHHHHcCCcHHHHHHHHhcCChHHHHHHHhhcCCCCCCCCCCCCCCCccccCCCccccccCCCCCccc
Q psy2685 618 LGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLT 693 (992)
Q Consensus 618 lg~~~eai~i~~~~~~~~~A~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (992)
+||+++|+++|.++|++++||.+|++||+++.++++.++++.++++..+|+.. .+.+..||+|+.....|||++.
T Consensus 102 lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~~~p~~~~~~~~~nwp~~~ 176 (177)
T 3mkq_B 102 NNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQM-DASNFVQRPVISKPLEKWPLKE 176 (177)
T ss_dssp HTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHTTCCGGGCCCCSCC-CCSCCSCCCCCSSCCSSCCBCC
T ss_pred cCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHhCCccccccCCCcC-CcccCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999998887788772 2323366666766789999975
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-30 Score=295.45 Aligned_cols=285 Identities=12% Similarity=0.175 Sum_probs=234.3
Q ss_pred cCCCC--EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEecc-CCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q psy2685 7 TKSAR--VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDE-HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83 (992)
Q Consensus 7 ~H~~~--V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~ 83 (992)
+|... +.+++|++ ..+++++.||.|++||..+++....+.. |.+.|.+++|+|++++|++|+.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 55544 45577775 4478888999999999999998887766 7899999999999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECC-CCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ-SRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162 (992)
Q Consensus 84 ~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~-t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iw 162 (992)
+.+..+.+|...|.+++|+ +..+++|+.||.|++||++ .+..+..+.+|...|.+++|+|+++++++|+.||.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 9999999999999999995 5699999999999999998 567788899999999999999999999999999999999
Q ss_pred ECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC-CEEEEEe--CCCeEEEEECCCCeeee
Q psy2685 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS-EVIVSNA--EDKSIRLWDMTKRTCLN 239 (992)
Q Consensus 163 d~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg-~~L~s~s--~Dg~I~vwdl~~~~~l~ 239 (992)
|+++.. ....+.+|...|.+++|+|++ .++++++ .|+.|++||+.+++.
T Consensus 245 d~~~~~--------------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-- 296 (401)
T 4aez_A 245 DARSSI--------------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-- 296 (401)
T ss_dssp ETTCSS--------------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--
T ss_pred cCCCCC--------------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--
Confidence 997632 456677899999999999976 4666654 688888887665443
Q ss_pred EeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEE--CCCEEEEEecCCcceEEe
Q psy2685 240 TFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH--DAGMVVFKFERERPAYTV 317 (992)
Q Consensus 240 ~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgs--ddgiivw~l~~~~~~~~~ 317 (992)
+..+. +...+.+++|+|+++.+++++ .++
T Consensus 297 ---------------------------------~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg--------------- 327 (401)
T 4aez_A 297 ---------------------------------VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN--------------- 327 (401)
T ss_dssp ---------------------------------EEEEE-CSSCEEEEEECSSSSEEEEEECTTTC---------------
T ss_pred ---------------------------------EEEEe-CCCcEEEEEECCCCCeEEEEeecCCC---------------
Confidence 33332 345799999999999999854 433
Q ss_pred eccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCc
Q psy2685 318 HNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 318 ~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
.+++||+.++.......+. +|...|.+++|+|+|.++++++.+ |.+++|++....
T Consensus 328 -----------~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~d------g~i~iw~~~~~~ 382 (401)
T 4aez_A 328 -----------NLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASD------ENLKFWRVYDGD 382 (401)
T ss_dssp -----------EEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTT------SEEEEEECCC--
T ss_pred -----------cEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCC------CcEEEEECCCCc
Confidence 4455777665544444443 578899999999999999998765 999999997654
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=5.9e-31 Score=294.23 Aligned_cols=268 Identities=10% Similarity=0.078 Sum_probs=234.7
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe---EEEEeccCCCCEEEEEEecCCC-EEEEEECCCeEEEEEc
Q psy2685 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT---LLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNY 80 (992)
Q Consensus 5 l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~---~~~~~~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~VWd~ 80 (992)
.++|.+.|++++|+|++++|++|+.||.|++||+.++. ....+..|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 46899999999999999999999999999999998876 3445558999999999999999 9999999999999999
Q ss_pred -CCCeEEEEEcc--CCCCEEEEEEecCCCEEEEEECCCeEEEEECCC---------CeeEEEEecCCCCeEEEEEecCCC
Q psy2685 81 -KQRKCIFTLLG--HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS---------RNCICVLTGHNHYVMCAQFHPTDD 148 (992)
Q Consensus 81 -~t~~~~~~l~~--h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t---------~~~i~~l~~h~~~V~sl~fspdg~ 148 (992)
.+++. ..+.+ |...|.+++|+| +..+++++.|+.|++||+++ ++++..+. |...|.+++|+|++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 87765 66778 999999999999 99999999999999999987 66666666 88999999999887
Q ss_pred EEEEEECCCeEEEEECCC-CccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCe
Q psy2685 149 IVVSASLDQTIRVWDISG-LRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKS 226 (992)
Q Consensus 149 ~L~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg~ 226 (992)
+++++.|+.|++||+++ ... ........|...+.+++|+| +++++++++.||.
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~------------------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDD------------------------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTC------------------------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred -EEEEeCCCeEEEEECCccccc------------------------cceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 99999999999999875 321 12234456888999999999 9999999999999
Q ss_pred EEEEECCCC------eeeeEeeccCc---------ccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCE
Q psy2685 227 IRLWDMTKR------TCLNTFRREQE---------RFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRRE-QERF 283 (992)
Q Consensus 227 I~vwdl~~~------~~l~~~~~~~~---------~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h-~~~V 283 (992)
|++|++..+ +....+..+.. .+. +.++++++.||.|++||+.+++.+..+..| ...|
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence 999999887 67777776643 322 378999999999999999999999999998 9999
Q ss_pred EEEEEeCCCCEEEEEECCCE
Q psy2685 284 WVLVAHPTLNLFAAGHDAGM 303 (992)
Q Consensus 284 ~~la~spdg~~Lasgsddgi 303 (992)
++++ |++++|++|+.||.
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEEE--ECSSEEEEEEECTH
T ss_pred eEec--CCCCeEEEEecCCc
Confidence 9999 99999999998886
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=1.2e-29 Score=297.48 Aligned_cols=273 Identities=21% Similarity=0.413 Sum_probs=237.2
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEe--cCCCEEEEEECCCeEEEEE
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH--NQQPIFVSGGDDYKIKVWN 79 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fs--pdg~~Lasgs~Dg~I~VWd 79 (992)
+.++.+|.+.|++++|+|++ .+++|+.||+|++||+++++.+..+.+|.+.|.+++|+ ++++++++|+.||.|++||
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 46788999999999999988 89999999999999999999999999999999999999 5778999999999999999
Q ss_pred cCCCe-----------------------EEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCC
Q psy2685 80 YKQRK-----------------------CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNH 136 (992)
Q Consensus 80 ~~t~~-----------------------~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~ 136 (992)
+.++. ....+.+|...+.++ +++++++++|+.||.|++||+++++++..+.+|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 98765 255678899998877 57788999999999999999999999999999999
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC
Q psy2685 137 YVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE 216 (992)
Q Consensus 137 ~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~ 216 (992)
.|.+++|+|+++.+++|+.||+|++||+++.+ .+..+.+|...|.++.|+ +.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------------------------~~~~~~~h~~~v~~~~~~--~~ 363 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGE--------------------------LMYTLQGHTALVGLLRLS--DK 363 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------------------------EEEEECCCSSCEEEEEEC--SS
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------------------------EEEEEeCCCCcEEEEEEc--CC
Confidence 99999999999999999999999999987642 567788999999999998 57
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeEeeccCccc------ccCEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCEEEEEEe
Q psy2685 217 VIVSNAEDKSIRLWDMTKRTCLNTFRREQERF------WSEVIVSNAEDKSIRLWDMTKRTCLNT-FRREQERFWVLVAH 289 (992)
Q Consensus 217 ~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~------~s~~l~sgs~Dg~I~vwd~~t~~~v~~-l~~h~~~V~~la~s 289 (992)
+|++++.||+|++||+.++............. .+.++++++ ||.|++||+.+++.+.. +..|...|++++|+
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 99999999999999999987665554322111 136777777 99999999999999886 56788899999998
Q ss_pred CCCCEEEEEECCCEEEEE
Q psy2685 290 PTLNLFAAGHDAGMVVFK 307 (992)
Q Consensus 290 pdg~~Lasgsddgiivw~ 307 (992)
+..+++++++++..+|+
T Consensus 443 -~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 443 -GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp -TTEEEEEEEETTEEEEE
T ss_pred -CCEEEEEEEeCCeEEEE
Confidence 45666777778776553
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.1e-30 Score=290.74 Aligned_cols=258 Identities=16% Similarity=0.260 Sum_probs=218.5
Q ss_pred CcEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcC--CCeEEEEeccCCCCEEEEEEecC--CCEEEEEECCCeEE
Q psy2685 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYR--MNTLLEKFDEHEGPVRGICFHNQ--QPIFVSGGDDYKIK 76 (992)
Q Consensus 1 ml~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~--~g~~~~~~~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~ 76 (992)
|+..+++|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456799999999999999999999999999999999998 66777889999999999999987 89999999999999
Q ss_pred EEEcCCCe--EEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEEEECCCC--eeEEEEecCCCCeEEEEEec-----
Q psy2685 77 VWNYKQRK--CIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRIWNWQSR--NCICVLTGHNHYVMCAQFHP----- 145 (992)
Q Consensus 77 VWd~~t~~--~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~vwdl~t~--~~i~~l~~h~~~V~sl~fsp----- 145 (992)
+||+.+++ ....+..|...|.+++|+|+ +.++++++.|+.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 77788889999999999999 999999999999999999887 34556778999999999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC---
Q psy2685 146 --------TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK--- 214 (992)
Q Consensus 146 --------dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd--- 214 (992)
++..+++++.||.|++||+++.... ......+.+|...|.+++|+|+
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------------YVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTE----------------------EEEEEEECCCSSCEEEEEECCCCSS
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcc----------------------eeeEEEEecccCcEeEEEECCCCCC
Confidence 6899999999999999998753211 0245677889999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCE
Q psy2685 215 SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNL 294 (992)
Q Consensus 215 g~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~ 294 (992)
+.+|++++.||.|++||+.++..... ..+.....|...+++++|+|++++
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------~~~~~~~~~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWK------------------------------KTLLKEEKFPDVLWRASWSLSGNV 270 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCE------------------------------EEESSSSCCSSCEEEEEECSSSCC
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccce------------------------------eeeeccccCCCcEEEEEEcCCCCE
Confidence 89999999999999999876431100 011112347788999999999999
Q ss_pred EEEEECCC-EEEEEecC
Q psy2685 295 FAAGHDAG-MVVFKFER 310 (992)
Q Consensus 295 Lasgsddg-iivw~l~~ 310 (992)
|++++.+| +.+|++..
T Consensus 271 l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEESSSSEEEEEEEE
T ss_pred EEEecCCCcEEEEeCCC
Confidence 99887666 55777653
No 79
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.1e-31 Score=297.21 Aligned_cols=251 Identities=15% Similarity=0.226 Sum_probs=202.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--EEEEeccCCCCEEEEEEec--CCCEEEEEECCCeEEEEE
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT--LLEKFDEHEGPVRGICFHN--QQPIFVSGGDDYKIKVWN 79 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~--~~~~~~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~VWd 79 (992)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|.++|.+++|+| ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998775 4678899999999999986 488999999999999999
Q ss_pred cCCC--eEEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEEEECCCCee---EEEEecCCCCeEEEEEecC------
Q psy2685 80 YKQR--KCIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRIWNWQSRNC---ICVLTGHNHYVMCAQFHPT------ 146 (992)
Q Consensus 80 ~~t~--~~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~vwdl~t~~~---i~~l~~h~~~V~sl~fspd------ 146 (992)
++++ .....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9887 466778899999999999998 78999999999999999987532 3445689999999999997
Q ss_pred -----------CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC
Q psy2685 147 -----------DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS 215 (992)
Q Consensus 147 -----------g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg 215 (992)
+.+|++|+.|++|++||++.... ......+.+|...|.+++|+|++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------------------~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-----------------------WKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-----------------------EEEEECCBCCSSCEEEEECCCCS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCc-----------------------cceeeecccCCCceEEEEecCCC
Confidence 36899999999999998853210 01455678999999999999986
Q ss_pred ----CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCC
Q psy2685 216 ----EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT 291 (992)
Q Consensus 216 ----~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spd 291 (992)
.+|++++.|++|++||+.+... .......+..|.+.|++++|+|+
T Consensus 225 ~~~~~~las~s~D~~v~iw~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 225 GLPTSTIASCSQDGRVFIWTCDDASS-------------------------------NTWSPKLLHKFNDVVWHVSWSIT 273 (316)
T ss_dssp SCSCCEEEEEETTCEEEEEECSSTTC-------------------------------CCCBCCEEEECSSCEEEEEECTT
T ss_pred CCCCceEEEEcCCCeEEEEEccCccc-------------------------------cchhhhhhhcCCCcEEEEEEcCC
Confidence 7899999999999998864210 00001123456789999999999
Q ss_pred CCEEEEEECCCE-EEEEe
Q psy2685 292 LNLFAAGHDAGM-VVFKF 308 (992)
Q Consensus 292 g~~Lasgsddgi-ivw~l 308 (992)
+++||+|+.|+. .+|+.
T Consensus 274 g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp TCCEEEEESSSCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEE
Confidence 999999887654 35543
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=2.4e-30 Score=291.25 Aligned_cols=284 Identities=20% Similarity=0.335 Sum_probs=232.7
Q ss_pred EeccCCCCEEEEEEecC----CCEEEEEECCCeEEEEEcCCCeEEEEEcc-----CCCCEEEEEEecC----CCEEEEEE
Q psy2685 46 KFDEHEGPVRGICFHNQ----QPIFVSGGDDYKIKVWNYKQRKCIFTLLG-----HLDYIRTTFFHHE----YPWILSAS 112 (992)
Q Consensus 46 ~~~~h~~~V~~l~fspd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-----h~~~V~~i~fspd----~~~L~sgs 112 (992)
...+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34579999999999984 45677777788999999998877666543 5678999999999 67999999
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCeEEEEEec-CCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCC
Q psy2685 113 DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191 (992)
Q Consensus 113 ~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~ 191 (992)
.||.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||+|++||++..+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------- 149 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT----------------------- 149 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----------------------
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----------------------
Confidence 999999999999999999999999999999999 89999999999999999997642
Q ss_pred cceEEEEE---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeec-------------------------
Q psy2685 192 KAWEVDIF---RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRR------------------------- 243 (992)
Q Consensus 192 ~~~~i~~l---~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~------------------------- 243 (992)
....+ .+|...|.+++|+|++++|++++.|+.|++||+.+++....+..
T Consensus 150 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 150 ---LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp ---EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred ---EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 33444 67999999999999999999999999999999998755433322
Q ss_pred ---cCcccc-----cCEEEEEeCCCeEEEEECCCCe--------------EEEEeecCCCCEEEEEEeCC--CCEEEEEE
Q psy2685 244 ---EQERFW-----SEVIVSNAEDKSIRLWDMTKRT--------------CLNTFRREQERFWVLVAHPT--LNLFAAGH 299 (992)
Q Consensus 244 ---~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~--------------~v~~l~~h~~~V~~la~spd--g~~Lasgs 299 (992)
+...+. +.++++++.|+.|++||+.++. .+..+..|...|++++|+|+ +++|++|+
T Consensus 227 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 227 RDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp CSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred ccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 333322 5899999999999999998764 37888899999999999999 99999998
Q ss_pred CCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCce--EEEEeecC-CCccceeEEEccCCCEEEEEecCCccc
Q psy2685 300 DAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDS--VVMQLRGG-GRIPAHSISYNATEHSILVTTRNANNF 376 (992)
Q Consensus 300 ddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~--~v~~l~~~-~~~~I~~lafspdg~~lav~~~~~~~~ 376 (992)
.+|.+ ++||+.+++.. ....+... +...|.+++|+|++++|++++.+
T Consensus 307 ~dg~i--------------------------~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---- 356 (366)
T 3k26_A 307 QVGKL--------------------------YVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD---- 356 (366)
T ss_dssp TTSCE--------------------------EEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT----
T ss_pred cCCcE--------------------------EEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC----
Confidence 76643 34666554432 22233321 36899999999999999999875
Q ss_pred cCCeEEEEEeC
Q psy2685 377 ENSTYDLYMIP 387 (992)
Q Consensus 377 ~~g~i~i~~l~ 387 (992)
|.+++|++.
T Consensus 357 --g~i~iwd~~ 365 (366)
T 3k26_A 357 --ASIWRWDRL 365 (366)
T ss_dssp --SEEEEEEC-
T ss_pred --CEEEEEEec
Confidence 999999874
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.8e-30 Score=298.36 Aligned_cols=266 Identities=27% Similarity=0.515 Sum_probs=234.7
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q psy2685 6 ETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKC 85 (992)
Q Consensus 6 ~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~ 85 (992)
.+|...|.+++| +++++++|+.||.|++||..+++....+.+|.+.|.+++| +++.|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 346667888877 7899999999999999999999999999999999999999 788999999999999999999999
Q ss_pred EEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE---EEEecCCCCeEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 86 IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI---CVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 162 (992)
Q Consensus 86 ~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i---~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iw 162 (992)
+..+.+|.+.|.+++|++ ..+++|+.||.|++||++++... ..+.+|...|.+++| +++++++|+.||+|++|
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 999999999999999974 58999999999999999987655 677899999999999 67899999999999999
Q ss_pred ECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 163 d~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
|+++.. .+..+.+|...|.++.|+ ++++++|+.||.|++||+.+++++..+.
T Consensus 282 d~~~~~--------------------------~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 282 NTSTCE--------------------------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp ETTTCC--------------------------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ECCcCc--------------------------EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 987642 566778899999999995 6799999999999999999999999998
Q ss_pred ccCcccc-----cCEEEEEeCCCeEEEEECCCCe---------EEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE-EEE
Q psy2685 243 REQERFW-----SEVIVSNAEDKSIRLWDMTKRT---------CLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV-VFK 307 (992)
Q Consensus 243 ~~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~---------~v~~l~~h~~~V~~la~spdg~~Lasgsddgii-vw~ 307 (992)
.|...+. +..+++|+.||.|++||+.++. ++..+.+|.+.|.+++| ++..|++|+.||.+ +|+
T Consensus 334 ~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 334 GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 8876654 4899999999999999987665 78889999999999999 77888888876643 554
Q ss_pred ec
Q psy2685 308 FE 309 (992)
Q Consensus 308 l~ 309 (992)
+.
T Consensus 412 ~~ 413 (435)
T 1p22_A 412 FL 413 (435)
T ss_dssp --
T ss_pred CC
Confidence 43
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2e-29 Score=288.29 Aligned_cols=289 Identities=9% Similarity=0.088 Sum_probs=238.3
Q ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe------EEEEEccCCCCEEEEEEecC----C---CEEE
Q psy2685 43 LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK------CIFTLLGHLDYIRTTFFHHE----Y---PWIL 109 (992)
Q Consensus 43 ~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~V~~i~fspd----~---~~L~ 109 (992)
....+.+|.++|++++|+| ++|++|+.||.|++||+.+++ ....+.+|..+|.+++|+|+ + .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3456788999999999999 799999999999999999887 77888899999999999999 9 9999
Q ss_pred EEECCCeEEEEECCCCee-----EEEEecC-----CCCeEEEEEe----cCCCE-EEEEECCCeEEEEECCC------Cc
Q psy2685 110 SASDDQTIRIWNWQSRNC-----ICVLTGH-----NHYVMCAQFH----PTDDI-VVSASLDQTIRVWDISG------LR 168 (992)
Q Consensus 110 sgs~Dg~I~vwdl~t~~~-----i~~l~~h-----~~~V~sl~fs----pdg~~-L~sgs~Dg~I~iwd~~~------~~ 168 (992)
+++.||.|++||+.+++. +..+..| ...|.+++|+ |+++. +++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999998887 8888888 5999999999 99999 99999999999999976 32
Q ss_pred cccccCCcccCCCeEEEEEccCCcceEEEEE-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 169 KKNVAPGMGADDRQIKLWRMNDSKAWEVDIF-------RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 169 ~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l-------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
.... .+...+ ..|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+
T Consensus 166 ~~~~---------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 166 TLNW---------------------SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TTCC---------------------CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred eeec---------------------cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 2110 011133 4588899999999999 9999999999999999999999988
Q ss_pred ec---c---Ccccc-------cCEEEEEeCC---CeEEEEECCCCeEEEEeec-------------CCCCEEEEEEeCCC
Q psy2685 242 RR---E---QERFW-------SEVIVSNAED---KSIRLWDMTKRTCLNTFRR-------------EQERFWVLVAHPTL 292 (992)
Q Consensus 242 ~~---~---~~~~~-------s~~l~sgs~D---g~I~vwd~~t~~~v~~l~~-------------h~~~V~~la~spdg 292 (992)
.. | ...+. +.++++++.| +.|++||+.+++.+..+.. |...|.+++|+|++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 87 6 54432 3789999999 9999999999999999988 99999999999999
Q ss_pred CEEEEEECCCEE-EEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEee---cCC---------------Ccc
Q psy2685 293 NLFAAGHDAGMV-VFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR---GGG---------------RIP 353 (992)
Q Consensus 293 ~~Lasgsddgii-vw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~---~~~---------------~~~ 353 (992)
++|++|+.++.+ +|++. +++....+... ..| ..+
T Consensus 304 ~~l~~~~~dg~i~iwd~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVK---------------------------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356 (397)
T ss_dssp SEEEEEETTSEEEEEETT---------------------------TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CEEEEEeCCCeEEEEEcC---------------------------CCceeEEEecccCcccchhhhhccccccccccCCc
Confidence 999999877643 55443 33222222100 023 788
Q ss_pred ceeEEEccCC----------CEEEEEecCCccccCCeEEEEEeCC
Q psy2685 354 AHSISYNATE----------HSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 354 I~~lafspdg----------~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
|.+++|+|+| .++++++.+ |.+++|++..
T Consensus 357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~ 395 (397)
T 1sq9_A 357 VFDVKFLKKGWRSGMGADLNESLCCVCLD------RSIRWFREAG 395 (397)
T ss_dssp EEEEEEECTTTSBSTTCTTSCEEEEEETT------TEEEEEEEEC
T ss_pred eeEEEeccccccccccccccceEEEecCC------CcEEEEEcCC
Confidence 9999999999 788888765 9999999864
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=271.40 Aligned_cols=280 Identities=18% Similarity=0.258 Sum_probs=234.4
Q ss_pred CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 120 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vw 120 (992)
.+....+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.++++|+.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4678889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC---eeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 121 NWQSR---NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 121 dl~t~---~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
++... +.+..+.+|...|.+++| +++.+++++.||.|++||.. ....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~----------------------------~~~~ 136 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG----------------------------SLVY 136 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT----------------------------EEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC----------------------------cEEE
Confidence 98753 667888999999999999 46799999999999999922 2566
Q ss_pred EEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEeec-cCcccc------cCEEEEEeCCCeEEEEECCC
Q psy2685 198 IFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTKRTCLNTFRR-EQERFW------SEVIVSNAEDKSIRLWDMTK 269 (992)
Q Consensus 198 ~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~-~~~~~~------s~~l~sgs~Dg~I~vwd~~t 269 (992)
.+..|...+.++.|+| +++.+++++.|+.|++|| .+.....+.. +...+. ...+++++.|+.|++||+.+
T Consensus 137 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 137 NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCc
Confidence 7788999999999998 899999999999999999 4556666665 433332 24599999999999999999
Q ss_pred CeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecC
Q psy2685 270 RTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGG 349 (992)
Q Consensus 270 ~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~ 349 (992)
++.+..+..|...+.+++|+|++. +++|+.++. +++||+.+++..... ..
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~--------------------------v~iwd~~~~~~~~~~---~~ 264 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRT--------------------------VRIWSKENGSLKQVI---TL 264 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSC-EEEEETTSE--------------------------EEEECTTTCCEEEEE---EC
T ss_pred hhhhhhhhcCCceEEEEEEecCCC-EEEEecCCE--------------------------EEEEECCCCceeEEE---ec
Confidence 999999999999999999999995 666665543 344666555433333 24
Q ss_pred CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCc
Q psy2685 350 GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 350 ~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
|..+|.+++|+|+++++ +++. +|.+++|++....
T Consensus 265 ~~~~i~~~~~~~~~~~~-~~~~------dg~i~iw~~~~~~ 298 (313)
T 3odt_A 265 PAISIWSVDCMSNGDII-VGSS------DNLVRIFSQEKSR 298 (313)
T ss_dssp SSSCEEEEEECTTSCEE-EEET------TSCEEEEESCGGG
T ss_pred cCceEEEEEEccCCCEE-EEeC------CCcEEEEeCCCCc
Confidence 56789999999999954 4544 4899999987653
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=285.27 Aligned_cols=273 Identities=16% Similarity=0.287 Sum_probs=228.4
Q ss_pred cEEeecCCCCEEEEEEcCC---CCEEEEEEcCCeEEEEEcCC-CeEE-EEeccCCCCEEEEEEecCCCEEEEEECCCeEE
Q psy2685 2 LTKFETKSARVKGLSFHPK---RPWILSSLHNGVIQLWDYRM-NTLL-EKFDEHEGPVRGICFHNQQPIFVSGGDDYKIK 76 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspd---g~~Lasg~~dg~I~IWd~~~-g~~~-~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 76 (992)
+..+++|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+..|.+.|.+++|+|++++|++++.||.|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3457899999999999999 59999999999999999986 5554 77888999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEE--ecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE
Q psy2685 77 VWNYKQRKCIFTLLGHLDYIRTTFF--HHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 77 VWd~~t~~~~~~l~~h~~~V~~i~f--spd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 154 (992)
+||+.+++... +..|...|.+++| +|++.++++++.||.|++||+++++++..+..|. .+.++.+. .+.+++++
T Consensus 112 iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 187 (368)
T 3mmy_A 112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVAT 187 (368)
T ss_dssp EEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEE
T ss_pred EEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEe
Confidence 99999998776 5679999999999 8899999999999999999999999999888665 56666666 45889999
Q ss_pred CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCE----EEEEeCCCeEEEE
Q psy2685 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV----IVSNAEDKSIRLW 230 (992)
Q Consensus 155 ~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~----L~s~s~Dg~I~vw 230 (992)
.++.+.+|+++..... .......+...+.++.+.++... +++++.|+.|++|
T Consensus 188 ~~~~i~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 188 AERGLIVYQLENQPSE------------------------FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp GGGCEEEEECSSSCEE------------------------EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred CCCcEEEEEeccccch------------------------hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 9999999998753210 11111233445666666655543 9999999999999
Q ss_pred ECCCC---eeeeEeeccCc------------ccc-------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEE
Q psy2685 231 DMTKR---TCLNTFRREQE------------RFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVA 288 (992)
Q Consensus 231 dl~~~---~~l~~~~~~~~------------~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~ 288 (992)
|+... ..+..+..+.. .+. +.++++++.||.|++||+.+++++..+..|...|++++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 323 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE
Confidence 99987 44556655543 222 378999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCC
Q psy2685 289 HPTLNLFAAGHDAG 302 (992)
Q Consensus 289 spdg~~Lasgsddg 302 (992)
+|+|++|++|+.++
T Consensus 324 s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 324 NHNGNIFAYASSYD 337 (368)
T ss_dssp CTTSSCEEEEECCC
T ss_pred CCCCCeEEEEeccc
Confidence 99999999998765
No 85
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-30 Score=295.69 Aligned_cols=328 Identities=14% Similarity=0.249 Sum_probs=244.8
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEe-ccCCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC---Ce---EEE
Q psy2685 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKF-DEHEGPVRGICFHN-QQPIFVSGGDDYKIKVWNYKQ---RK---CIF 87 (992)
Q Consensus 16 afspdg~~Lasg~~dg~I~IWd~~~g~~~~~~-~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~VWd~~t---~~---~~~ 87 (992)
.|+|++..+++++ .|+ .+++.+..+ ++|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4677777777654 488 668888888 88999999999999 999999999999999999876 33 223
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECC---CCeeEEEEec------------CCCCeEEEE--EecCCCEE
Q psy2685 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ---SRNCICVLTG------------HNHYVMCAQ--FHPTDDIV 150 (992)
Q Consensus 88 ~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~---t~~~i~~l~~------------h~~~V~sl~--fspdg~~L 150 (992)
.+ +|.+.|.+++|+|++.+|++|+.||.|++||++ +++....+.+ +...+.++. ++|+++++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 599999999999999999999999999999994 5554443332 455667766 55789999
Q ss_pred EEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy2685 151 VSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG--HYNNVSCVLFHPKSEVIVSNAEDKSIR 228 (992)
Q Consensus 151 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~--h~~~V~~v~fspdg~~L~s~s~Dg~I~ 228 (992)
++|+.||+|++||+++.+ .+..+.+ |.+.|++++|+|++++|++++.||+|+
T Consensus 186 ~~~~~d~~i~iwd~~~~~--------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 239 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLE--------------------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIID 239 (437)
T ss_dssp EEEETTSEEEEEETTTCC--------------------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEEeCCCeEEEEeCCCCe--------------------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 999999999999997642 4555666 889999999999999999999999999
Q ss_pred EEECCCCeeeeEee-ccCcccc-----------cCEEEEEeCCCeEEEEECCCCeEEEEeecC-----------------
Q psy2685 229 LWDMTKRTCLNTFR-REQERFW-----------SEVIVSNAEDKSIRLWDMTKRTCLNTFRRE----------------- 279 (992)
Q Consensus 229 vwdl~~~~~l~~~~-~~~~~~~-----------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h----------------- 279 (992)
+||+.+++++..+. .+...+. +.++++++.||.|++||+.+++++..+.+|
T Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 240 IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 99999999988876 4433322 248999999999999999999988887644
Q ss_pred ---------CCCEEEEEEeCCCCEEEEEECCC-EEEEEecCCcceEEeecc----EEEE---EeCCeEEEEEe-eCCCce
Q psy2685 280 ---------QERFWVLVAHPTLNLFAAGHDAG-MVVFKFERERPAYTVHNN----VMYY---VKERFLHRLDL-TNSKDS 341 (992)
Q Consensus 280 ---------~~~V~~la~spdg~~Lasgsddg-iivw~l~~~~~~~~~~~~----~v~~---~~~~~i~i~dl-~~~~~~ 341 (992)
...|++++|+ ++++|++|+.|+ +.+|++.+........+. ..+. .......+..- ......
T Consensus 320 ~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----
T ss_pred cceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccc
Confidence 3457888999 778899888655 568999887766544321 0110 11111111111 001111
Q ss_pred EEEEeecCCCccceeEEEccC--CCEEEEEecCCccccCCeEEEEE
Q psy2685 342 VVMQLRGGGRIPAHSISYNAT--EHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 342 ~v~~l~~~~~~~I~~lafspd--g~~lav~~~~~~~~~~g~i~i~~ 385 (992)
.. .....|...|.+++|+++ +.+|++++.+ |.+++|.
T Consensus 399 ~~-~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d------G~I~iw~ 437 (437)
T 3gre_A 399 SV-DDSLYHHDIINSISTCEVDETPLLVACDNS------GLIGIFQ 437 (437)
T ss_dssp ---------CCCEEEEEEEESSSSEEEEEEETT------SCEEEEC
T ss_pred cc-CcccccccceeeEeeeccCCceEEEEEcCC------ceEEEeC
Confidence 11 112347889999999998 7788888765 9999984
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.4e-29 Score=277.86 Aligned_cols=266 Identities=16% Similarity=0.164 Sum_probs=202.0
Q ss_pred EEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC--CeEEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEEE
Q psy2685 45 EKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ--RKCIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRIW 120 (992)
Q Consensus 45 ~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~vw 120 (992)
..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+ ++.+..+.+|.++|.+++|+|+ +.+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 3677889999999999999863 8899999999999999
Q ss_pred ECCCCe--eEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEE
Q psy2685 121 NWQSRN--CICVLTGHNHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEV 196 (992)
Q Consensus 121 dl~t~~--~i~~l~~h~~~V~sl~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i 196 (992)
|+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++.... ...
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------------------------~~~ 138 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------------------------TSP 138 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC------------------------BCC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc------------------------eee
Confidence 998874 56778889999999999997 78999999999999999875321 112
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCe----E
Q psy2685 197 DIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRT----C 272 (992)
Q Consensus 197 ~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~----~ 272 (992)
..+.+|...|.+++|+|++..- ++. ......+..+++|+.|++|++||+.++. .
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~-----~~~-----------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEE-----DGE-----------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EEEECCSSCEEEEEECCCC----------------------------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred eeeecccCccceEeecCCcccc-----ccc-----------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence 4567899999999999974210 000 0000112345555666666666655443 5
Q ss_pred EEEeecCCCCEEEEEEeCCC---CEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCce-EEEEee-
Q psy2685 273 LNTFRREQERFWVLVAHPTL---NLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDS-VVMQLR- 347 (992)
Q Consensus 273 v~~l~~h~~~V~~la~spdg---~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~-~v~~l~- 347 (992)
..++.+|...|.+++|+|++ ++|++|+.|+.+ ++||+.+.... ....+.
T Consensus 197 ~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v--------------------------~iWd~~~~~~~~~~~~~~~ 250 (297)
T 2pm7_B 197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC--------------------------IIWTQDNEQGPWKKTLLKE 250 (297)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE--------------------------EEEEESSTTSCCEEEESSS
T ss_pred EEEecCCCCceEEEEECCCCCCceEEEEEECCCcE--------------------------EEEEeCCCCCccceeeeec
Confidence 56788999999999999985 789998876543 33555432211 111121
Q ss_pred cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 348 GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 348 ~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
..+...|++++|+|+|++|++++.+ |.+++|+...
T Consensus 251 ~~~~~~v~~~~~s~~g~~las~~~D------~~v~lw~~~~ 285 (297)
T 2pm7_B 251 EKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (297)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEETT------SCEEEEEECT
T ss_pred ccCCCcEEEEEECCCCCEEEEEcCC------CcEEEEEECC
Confidence 2456789999999999999998865 8999998763
No 87
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-31 Score=313.57 Aligned_cols=317 Identities=10% Similarity=0.123 Sum_probs=242.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIF 87 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~ 87 (992)
-...|.+++|||||+++|+++.|++|+ |...++ .+++|...|.+++|+|+| .++.+.+|+.+... ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~ 80 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LL 80 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Ee
Confidence 357899999999999999999999999 755554 447899999999999999 56666666643222 22
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCC-----CeEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 88 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNH-----YVMCAQFHPTDDIVVSASLDQTIRVW 162 (992)
Q Consensus 88 ~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~-----~V~sl~fspdg~~L~sgs~Dg~I~iw 162 (992)
.+ .|.+.|.+++|||+|.+|++++.||.|++||.++ ++..+. |.. .|.+++|||||++|++|+.||+|++|
T Consensus 81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 22 5688999999999999999999999999999544 666666 665 49999999999999999999999999
Q ss_pred ECCCCccccccCCcccCCCeEEEEEccCCcceEEEEE----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-
Q psy2685 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF----RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTC- 237 (992)
Q Consensus 163 d~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~- 237 (992)
|+.+..... .+...+..+ .+|.+.|.+++|+|+| +++++.|++|++||+.++..
T Consensus 157 d~~~~~l~~-------------------~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 157 SIRKNSENT-------------------PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ECCCCTTTC-------------------CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ECCCCcccc-------------------ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 998642100 000123444 5678899999999999 88899999999999988773
Q ss_pred --eeEee-ccCcccc-----cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEE--eCCCCEEEEEECCCEEEEE
Q psy2685 238 --LNTFR-REQERFW-----SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVA--HPTLNLFAAGHDAGMVVFK 307 (992)
Q Consensus 238 --l~~~~-~~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~--spdg~~Lasgsddgiivw~ 307 (992)
..++. .|...++ +..+++++ +++|++||+.+++......+|.+.++.++| +|++..+++++.+|..+|.
T Consensus 216 ~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~ 294 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLL 294 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence 34553 4544443 36778776 699999999998874444489999999999 9999999999988888888
Q ss_pred ecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEec
Q psy2685 308 FERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR 371 (992)
Q Consensus 308 l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~ 371 (992)
+.. ..+..++..+.. .++++++|+....... .+ .+...|++++|||||+.+|+++.
T Consensus 295 ~d~--~~~spd~~l~a~-~d~~v~lW~~~g~~l~---~~--~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 295 EDE--LHVTADNIIAPY-LEKKFKKWSTIWNEFN---NY--ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSS--EEEECCCSSHHH-HHHHHHHTTTTTTSSS---SS--CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ecc--EEECCCceEEEE-cCCEEEEEECCCCcee---ee--ccceEEEEEEECCCCCEEEEEEe
Confidence 762 222222222222 3777888887544321 12 23567899999999999998874
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.9e-29 Score=288.02 Aligned_cols=295 Identities=14% Similarity=0.227 Sum_probs=234.2
Q ss_pred EcCCCeEEEEeccCCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCCeEEEEEc--cCCCCEEEEEEec-CCCEEEEEE
Q psy2685 37 DYRMNTLLEKFDEHEGPVRGICFHNQQ-PIFVSGGDDYKIKVWNYKQRKCIFTLL--GHLDYIRTTFFHH-EYPWILSAS 112 (992)
Q Consensus 37 d~~~g~~~~~~~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~i~fsp-d~~~L~sgs 112 (992)
+....+....+.+|.+.|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++.+|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 345667788899999999999999999 899999999999999999887777665 6999999999999 778999999
Q ss_pred CCCeEEEEECCCCeeEEEEecC---CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEcc
Q psy2685 113 DDQTIRIWNWQSRNCICVLTGH---NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN 189 (992)
Q Consensus 113 ~Dg~I~vwdl~t~~~i~~l~~h---~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~ 189 (992)
.|+.|++||+++ ..+..+..| ...|.+++|+|+++++++|+.||.|++||+++
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------- 194 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG----------------------- 194 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----------------------
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----------------------
Confidence 999999999985 555566544 47899999999999999999999999999853
Q ss_pred CCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CeeeeEeeccCccc--------ccCEEEEE
Q psy2685 190 DSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTK----RTCLNTFRREQERF--------WSEVIVSN 256 (992)
Q Consensus 190 ~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~vwdl~~----~~~l~~~~~~~~~~--------~s~~l~sg 256 (992)
.....+.+|...|.+++|+|+++ ++++++.|++|++||+.+ +..+..+. +...+ .+..++++
T Consensus 195 ----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 195 ----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp ----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEE
T ss_pred ----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEEEEcCCCCCEEEEE
Confidence 25667789999999999999999 999999999999999998 55666553 33332 23789999
Q ss_pred eCCCeEEEEECCCCeEEEEeecCC-------CCEEEEEEeCCCCEEEEEE-CCCEEEEEecCCcceEEeeccEEEEEeCC
Q psy2685 257 AEDKSIRLWDMTKRTCLNTFRREQ-------ERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTVHNNVMYYVKER 328 (992)
Q Consensus 257 s~Dg~I~vwd~~t~~~v~~l~~h~-------~~V~~la~spdg~~Lasgs-ddgiivw~l~~~~~~~~~~~~~v~~~~~~ 328 (992)
+.|+.|++||+.+++.+..+..|. ..+. +.|+|++..++++. .++.. ....++
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~------------------s~s~d~ 330 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL------------------LLNDKR 330 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTT------------------CTTCCC
T ss_pred cCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCccc------------------ccCCCC
Confidence 999999999999988766665443 3343 47777777666542 22211 013466
Q ss_pred eEEEEEeeCCCceEEEEeecC-CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 329 FLHRLDLTNSKDSVVMQLRGG-GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 329 ~i~i~dl~~~~~~~v~~l~~~-~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
.+++||+.+++. +..+... +...+..++|+|+|++|++++ + |.+++|++..
T Consensus 331 ~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d------~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGL--VHQLRDPNAAGIISLNKFSPTGDVLASGM-G------FNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCE--EEEECBTTBCSCCCEEEECTTSSEEEEEE-T------TEEEEEECC-
T ss_pred eEEEEecCCCce--eeeecCCCCCceEEEEEEecCccEEEEec-C------CcEEEEecCC
Confidence 778888876654 3344332 456677779999999999886 3 7999999763
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-31 Score=312.50 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=210.4
Q ss_pred EeecCCCCEEEEEEcCC------CCEEEEEEcCCeEEEEEcCCCeE-----------EEEeccCCCCEEEEEEecCCCEE
Q psy2685 4 KFETKSARVKGLSFHPK------RPWILSSLHNGVIQLWDYRMNTL-----------LEKFDEHEGPVRGICFHNQQPIF 66 (992)
Q Consensus 4 ~l~~H~~~V~~iafspd------g~~Lasg~~dg~I~IWd~~~g~~-----------~~~~~~h~~~V~~l~fspdg~~L 66 (992)
++.+|.+.|.+++|+|+ +.+||+|+.||+|++||+.++.. ...+.+|.+.|++++|+|++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 46788899999999997 57999999999999999976531 23677899999999999865 89
Q ss_pred EEEECCCeEEEEEcCCC-eEEEEEccCCCCEEEE--EEecCC-CEEEEEECCCeEEEEECCCCeeEEEEecCCC--CeEE
Q psy2685 67 VSGGDDYKIKVWNYKQR-KCIFTLLGHLDYIRTT--FFHHEY-PWILSASDDQTIRIWNWQSRNCICVLTGHNH--YVMC 140 (992)
Q Consensus 67 asgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~i--~fspd~-~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~--~V~s 140 (992)
++|+.||+|++||++++ .+...+.+|.+.|.++ .|+|++ .+|++|+.|++|++||+++++++.++.+|.. .|.+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 99999999999999876 3455688999999999 568887 8999999999999999999888777777754 5889
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEE
Q psy2685 141 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVS 220 (992)
Q Consensus 141 l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s 220 (992)
++|+|+++.+++++.|++|++||++... +...+.+|.+.|++++|+|+|++|++
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~--------------------------~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAF--------------------------AVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTT--------------------------CCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccc--------------------------cceeeecCCCceEEEEeCCCCCeEEE
Confidence 9999999999999999999999987642 33456789999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeEeeccCcccccCEE--EEEeCCC-eEEEEE------CC-CCeEEEEeecCCCCEEEEEEeC
Q psy2685 221 NAEDKSIRLWDMTKRTCLNTFRREQERFWSEVI--VSNAEDK-SIRLWD------MT-KRTCLNTFRREQERFWVLVAHP 290 (992)
Q Consensus 221 ~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l--~sgs~Dg-~I~vwd------~~-t~~~v~~l~~h~~~V~~la~sp 290 (992)
|+.|++|++||+..+ .+..............+ +..+.++ .+++|+ .. ++.++.++.+|...|++++|+|
T Consensus 415 gs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 415 GSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp EETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred EECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 999999999998653 22211110000000000 1112222 244444 22 4667788899999999999999
Q ss_pred CCC---EEEEEECCCEE-EEEecCC
Q psy2685 291 TLN---LFAAGHDAGMV-VFKFERE 311 (992)
Q Consensus 291 dg~---~Lasgsddgii-vw~l~~~ 311 (992)
+++ .+|+|+.+|.+ +|++..+
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCccHHHHhhccCceEEEEEcccc
Confidence 965 99999987754 6765543
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5e-29 Score=279.70 Aligned_cols=303 Identities=14% Similarity=0.206 Sum_probs=226.7
Q ss_pred EEeccCCCCEEEEEEecCCCEEE-EEEC---CCeEEEEEcCCCeEEEEE-ccCCCCEEEEEEecC---CCEEEEEECCCe
Q psy2685 45 EKFDEHEGPVRGICFHNQQPIFV-SGGD---DYKIKVWNYKQRKCIFTL-LGHLDYIRTTFFHHE---YPWILSASDDQT 116 (992)
Q Consensus 45 ~~~~~h~~~V~~l~fspdg~~La-sgs~---Dg~I~VWd~~t~~~~~~l-~~h~~~V~~i~fspd---~~~L~sgs~Dg~ 116 (992)
..+.+|.+.|.+++|+|+++.++ +|+. ||.|++||+.+++..... .+|..+|.+++|+|+ +.++++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 34567999999999999997555 5555 899999999988765443 479999999999998 699999999999
Q ss_pred EEEEECCCCe-eEEEEecCCCCeEEEEE------ecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEcc
Q psy2685 117 IRIWNWQSRN-CICVLTGHNHYVMCAQF------HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN 189 (992)
Q Consensus 117 I~vwdl~t~~-~i~~l~~h~~~V~sl~f------spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~ 189 (992)
|++||+.+++ ++..+.+|...|.++.| +|+++.+++++.||+|++||++....
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-------------------- 151 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-------------------- 151 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--------------------
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--------------------
Confidence 9999999888 88999999999999955 67899999999999999999976431
Q ss_pred CCcceEEEEEeccC----CCeEEEE----EcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcc------c---ccCE
Q psy2685 190 DSKAWEVDIFRGHY----NNVSCVL----FHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER------F---WSEV 252 (992)
Q Consensus 190 ~~~~~~i~~l~~h~----~~V~~v~----fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~------~---~s~~ 252 (992)
....+..|. ..+.++. |+|+++++++++.|+.|++||+.+++........... . .+..
T Consensus 152 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 226 (357)
T 3i2n_A 152 -----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNK 226 (357)
T ss_dssp -----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCE
T ss_pred -----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCE
Confidence 122333333 3788888 7889999999999999999999998875543322211 1 3478
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEe-----ecCCCCEEEEEEeCCCC-EEEEEECCCEE-EEEecCCcceEEeeccEEEEE
Q psy2685 253 IVSNAEDKSIRLWDMTKRTCLNTF-----RREQERFWVLVAHPTLN-LFAAGHDAGMV-VFKFERERPAYTVHNNVMYYV 325 (992)
Q Consensus 253 l~sgs~Dg~I~vwd~~t~~~v~~l-----~~h~~~V~~la~spdg~-~Lasgsddgii-vw~l~~~~~~~~~~~~~v~~~ 325 (992)
+++++.||.|++||+.+++.+..+ ..|...|++++|+|+++ ++++|+.+|.+ +|++.................
T Consensus 227 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred EEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 999999999999999887654444 38999999999999998 88998877644 676654432211100000000
Q ss_pred eCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEE-EEecCCccccCCeEEEEEeCCC
Q psy2685 326 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSIL-VTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 326 ~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~la-v~~~~~~~~~~g~i~i~~l~~~ 389 (992)
..+....+..+ ..|..+|.+++|+|+|++++ +++. +|.+++|++.+.
T Consensus 307 ----------~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~s~~~------d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 ----------VAGSVSLLQNV-TLSTQPISSLDWSPDKRGLCVCSSF------DQTVRVLIVTKL 354 (357)
T ss_dssp ----------CCCEEEEEEEE-ECCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECC-
T ss_pred ----------cccccceeecc-ccCCCCeeEEEEcCCCCeEEEEecC------CCcEEEEECCCc
Confidence 00011122333 35788999999999999998 4654 489999998764
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.2e-29 Score=287.12 Aligned_cols=288 Identities=9% Similarity=0.060 Sum_probs=216.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCC-------eEEEEEcCCCe----------EEEEeccCCCCEEEEEEecCCCEEEEEE-
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNG-------VIQLWDYRMNT----------LLEKFDEHEGPVRGICFHNQQPIFVSGG- 70 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg-------~I~IWd~~~g~----------~~~~~~~h~~~V~~l~fspdg~~Lasgs- 70 (992)
..||+|++|+||+++|++|+.+. .|++|++..+. ....+..|...|.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997543 59999986542 122456788888887765 55666654
Q ss_pred ----------CCCeEEEEEcCCCeE----EEEE-----ccCCCCEEEEEEecCCCEEEEEE--CCCeEEEEECCCCeeEE
Q psy2685 71 ----------DDYKIKVWNYKQRKC----IFTL-----LGHLDYIRTTFFHHEYPWILSAS--DDQTIRIWNWQSRNCIC 129 (992)
Q Consensus 71 ----------~Dg~I~VWd~~t~~~----~~~l-----~~h~~~V~~i~fspd~~~L~sgs--~Dg~I~vwdl~t~~~i~ 129 (992)
.|+.+++|++.+... .... ..+...+++++|+|||+++++++ .|++|++||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 467899999865421 1111 23456799999999999887554 78999999999999998
Q ss_pred EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEE
Q psy2685 130 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCV 209 (992)
Q Consensus 130 ~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v 209 (992)
.+. |.+.|.+++|+|+|+++++++.++ +.+|+...... .......+|...|.++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC------------------------IARKTDFDKNWSLSKI 225 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE------------------------EEEECCCCTTEEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcc------------------------eeeeecCCCCCCEEEE
Confidence 886 778899999999999999998665 45555433211 1233455788899999
Q ss_pred EEcCCCCEEEEEeCCC----eEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEE
Q psy2685 210 LFHPKSEVIVSNAEDK----SIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285 (992)
Q Consensus 210 ~fspdg~~L~s~s~Dg----~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~ 285 (992)
+|+|++..+++++.|+ .++.|++..+... ......+.+|...|++
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-------------------------------VLRSKQVTNRFKGITS 274 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-------------------------------EEEEEEEESSCSCEEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceec-------------------------------ceeeeeecCCCCCeEe
Confidence 9999999999999887 4555654332210 0123456788899999
Q ss_pred EEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCE
Q psy2685 286 LVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHS 365 (992)
Q Consensus 286 la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~ 365 (992)
++|+|+|++||+|+.|+. |++||+.+++ .+..+..+|..+|++++|||||++
T Consensus 275 ~~~Spdg~~lasgs~D~~--------------------------V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNS--------------------------IALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEECTTSCEEEEEETTSC--------------------------EEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCE
T ss_pred EEECCCCCceEEEcCCCE--------------------------EEEEECCCCc--EEEEecCcccCCEEEEEECCCCCE
Confidence 999999999999987654 3457775543 344455678999999999999999
Q ss_pred EEEEecCCccccCCeEEEEEeCCC
Q psy2685 366 ILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 366 lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
|++++.+ ++++||+++..
T Consensus 327 laS~S~D------~tvrvw~ip~~ 344 (365)
T 4h5i_A 327 VASVSAA------NTIHIIKLPLN 344 (365)
T ss_dssp EEEEETT------SEEEEEECCTT
T ss_pred EEEEeCC------CeEEEEEcCCC
Confidence 9999875 99999999754
No 92
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.5e-30 Score=318.35 Aligned_cols=257 Identities=16% Similarity=0.263 Sum_probs=213.8
Q ss_pred CcEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcC--CCeEEEEeccCCCCEEEEEEecC--CCEEEEEECCCeEE
Q psy2685 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYR--MNTLLEKFDEHEGPVRGICFHNQ--QPIFVSGGDDYKIK 76 (992)
Q Consensus 1 ml~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~--~g~~~~~~~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~ 76 (992)
|...+++|.++|++++|+|++++|++|+.||.|++||+. ++.....+.+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 1 ~~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred CeeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 567899999999999999999999999999999999988 55778889999999999999988 99999999999999
Q ss_pred EEEcCCCe--EEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEEEECCCC--eeEEEEecCCCCeEEEEEec-----
Q psy2685 77 VWNYKQRK--CIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRIWNWQSR--NCICVLTGHNHYVMCAQFHP----- 145 (992)
Q Consensus 77 VWd~~t~~--~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~vwdl~t~--~~i~~l~~h~~~V~sl~fsp----- 145 (992)
+||+.+++ ....+.+|..+|.+++|+|+ +..+++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 67788899999999999999 999999999999999999876 34556778999999999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC---
Q psy2685 146 --------TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK--- 214 (992)
Q Consensus 146 --------dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd--- 214 (992)
+++.+++|+.||+|++||+++.... ......+.+|.+.|++++|+|+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~----------------------~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------------YVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTE----------------------EEEEEEECCCSSCEEEEEECCCCSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCccc----------------------ceeeeeecCCCCcEEEEEeccCCCC
Confidence 5899999999999999998754211 0245677899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCE
Q psy2685 215 SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNL 294 (992)
Q Consensus 215 g~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~ 294 (992)
+.++++++.||.|++||+.++..... ..+.....|...|++++|+|+|++
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~------------------------------~~~~~~~~~~~~v~~l~~spdg~~ 268 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQGPWK------------------------------KTLLKEEKFPDVLWRASWSLSGNV 268 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSSSCCB------------------------------CCBSSSSCCSSCCCCEEECTTTCC
T ss_pred CCEEEEEecCCEEEEecCCCCCCcce------------------------------eEEeccCCCCCceEEEEEcCCCCE
Confidence 89999999999999999876532100 011122356778999999999999
Q ss_pred EEEEECCC-EEEEEec
Q psy2685 295 FAAGHDAG-MVVFKFE 309 (992)
Q Consensus 295 Lasgsddg-iivw~l~ 309 (992)
+++|+.|| +.+|++.
T Consensus 269 l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 269 LALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEECSSSCEECCBCC
T ss_pred EEEEcCCCEEEEEecC
Confidence 99988766 4466654
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=287.58 Aligned_cols=340 Identities=12% Similarity=0.172 Sum_probs=243.8
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCCeEEEEE-------------ccCCCC
Q psy2685 30 NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHN-QQPIFVSGGDDYKIKVWNYKQRKCIFTL-------------LGHLDY 95 (992)
Q Consensus 30 dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------------~~h~~~ 95 (992)
++.+++|+.+.++....+.+|.++|++++|+| ++++|++|+.||.|++||+.+++....+ .+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45677888888888888899999999999999 9999999999999999999877544333 259999
Q ss_pred EEEEEEec-CCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCC---CEEEEEECCCeEEEEECCCCcccc
Q psy2685 96 IRTTFFHH-EYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD---DIVVSASLDQTIRVWDISGLRKKN 171 (992)
Q Consensus 96 V~~i~fsp-d~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~ 171 (992)
|.+++|+| ++.++++++.||.|++||+.+++....+. +...+.++.|+|.+ .++++++.||.|++||+++..
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--- 177 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--- 177 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---
Confidence 99999999 77899999999999999999999888877 78889999999955 499999999999999987542
Q ss_pred ccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-eeeEeeccCcccc
Q psy2685 172 VAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKRT-CLNTFRREQERFW 249 (992)
Q Consensus 172 ~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~vwdl~~~~-~l~~~~~~~~~~~ 249 (992)
....+.+|.+.|.+++|+|+++ ++++++.||.|++||+.++. ++..+..+...
T Consensus 178 -----------------------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-- 232 (408)
T 4a11_B 178 -----------------------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK-- 232 (408)
T ss_dssp -----------------------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC--
T ss_pred -----------------------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc--
Confidence 3455778999999999999998 68999999999999998765 33333322110
Q ss_pred cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCC-EEEEEecCCcceEEe-----------
Q psy2685 250 SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAG-MVVFKFERERPAYTV----------- 317 (992)
Q Consensus 250 s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddg-iivw~l~~~~~~~~~----------- 317 (992)
...........|...|.+++|+|++++|++|+.++ +.+|++.+.......
T Consensus 233 ------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 233 ------------------KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp ------------------SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred ------------------cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 00111222356788999999999999999998766 669998766543211
Q ss_pred ---------eccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 318 ---------HNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 318 ---------~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
....++...++.+++||+.+++.. ..+ .+|...|.+++|+|++++|++++.+ |.+++|++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~ 365 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--TML-KGHYKTVDCCVFQSNFQELYSGSRD------CNILAWVPSL 365 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--EEE-CCCSSCEEEEEEETTTTEEEEEETT------SCEEEEEECC
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcce--eee-ccCCCeEEEEEEcCCCCEEEEECCC------CeEEEEeCCC
Confidence 233556668999999999776643 333 3678899999999999999998865 9999999987
Q ss_pred CccccceeccCccccceEEEEe--cCCeEEEEEcCCeEEEEEcC
Q psy2685 389 EESERKEVADGKRSTGISAVWV--ARNRFAVLDRNHTILIKNLK 430 (992)
Q Consensus 389 ~~~~~~~~~~~~~~~~~s~~w~--~~~~~av~~~~g~I~i~dl~ 430 (992)
........ .......+. ....+....+++.+.+|+..
T Consensus 366 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 366 YEPVPDDD-----ETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------------
T ss_pred CCccCCCC-----ceEeccccccccceeecccCccCceeecCCc
Confidence 54321110 000001111 13344445557888888653
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=7.8e-30 Score=297.54 Aligned_cols=294 Identities=14% Similarity=0.227 Sum_probs=226.8
Q ss_pred EEEeccCCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCCeE--EEEEccCCCCEEEEEEec-CCCEEEEEECCCeEEE
Q psy2685 44 LEKFDEHEGPVRGICFHNQ-QPIFVSGGDDYKIKVWNYKQRKC--IFTLLGHLDYIRTTFFHH-EYPWILSASDDQTIRI 119 (992)
Q Consensus 44 ~~~~~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~i~fsp-d~~~L~sgs~Dg~I~v 119 (992)
.....+|...|++++|||. +++||+|+.||.|+|||+.+++. ...+.+|.+.|++++|+| ++.+|++|+.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 3345578899999999995 56899999999999999987653 444568999999999998 6889999999999999
Q ss_pred EECCCCeeEEEEecC--CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 120 WNWQSRNCICVLTGH--NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 120 wdl~t~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
||++++........| ...+.+++|+|++.+|++|+.||+|++||+++. .+.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---------------------------~~~ 244 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---------------------------ELW 244 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---------------------------BCC
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---------------------------eeE
Confidence 999876554444333 346789999999999999999999999998652 233
Q ss_pred EEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeEe---eccCcccc-------cCEEEEEeCCCeEEEEE
Q psy2685 198 IFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKRTCLNTF---RREQERFW-------SEVIVSNAEDKSIRLWD 266 (992)
Q Consensus 198 ~l~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~vwdl~~~~~l~~~---~~~~~~~~-------s~~l~sgs~Dg~I~vwd 266 (992)
.+.+|...|.+++|+|++. ++++++.|++|++||+.+++....+ ..|...+. +.++++++.||.|++||
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 4678999999999999876 7889999999999999886544332 33444332 37999999999999999
Q ss_pred CCCCeEEEEeecCCC------CEEEEEEeCCCCEEEEEE-CCC-EEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCC
Q psy2685 267 MTKRTCLNTFRREQE------RFWVLVAHPTLNLFAAGH-DAG-MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNS 338 (992)
Q Consensus 267 ~~t~~~v~~l~~h~~------~V~~la~spdg~~Lasgs-ddg-iivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~ 338 (992)
+.++.....+..|.. ......|+|++.+++++. .++ ..++.. ..++.|++||..++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----------------~~~~~i~iwd~~~g 388 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP----------------YELRTIDVFDGNSG 388 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSST----------------TCCCCEEEECSSSC
T ss_pred CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEe----------------cCCCEEEEEECCCC
Confidence 999988877765543 234568999999888774 322 222110 13467899999777
Q ss_pred CceEEEEeecCCCccceeE-EEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 339 KDSVVMQLRGGGRIPAHSI-SYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 339 ~~~~v~~l~~~~~~~I~~l-afspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
+. +..+..+|...|.++ +|+|+|++|+++++ +++++|++...
T Consensus 389 ~~--~~~l~~~~~~~v~s~~~fspdg~~lasg~d-------~~i~iW~~~~g 431 (435)
T 4e54_B 389 KM--MCQLYDPESSGISSLNEFNPMGDTLASAMG-------YHILIWSQQEA 431 (435)
T ss_dssp CE--EEEECCSSCCCCCCEEEECTTSSCEEEECS-------SEEEECCCC--
T ss_pred cE--EEEEeCCCCCcEEEEEEECCCCCEEEEEcC-------CcEEEEECCcC
Confidence 64 334445677788887 69999999987653 58999988653
No 95
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=5.9e-28 Score=272.90 Aligned_cols=310 Identities=10% Similarity=0.105 Sum_probs=240.8
Q ss_pred eccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe--EEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 47 FDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK--CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124 (992)
Q Consensus 47 ~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t 124 (992)
+..|.++|.+++|+|++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44589999999999999999999999999999999987 8888999999999999999999999999999999999998
Q ss_pred CeeEEEE--ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc
Q psy2685 125 RNCICVL--TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH 202 (992)
Q Consensus 125 ~~~i~~l--~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h 202 (992)
++....+ ..|...|.+++|+|+++++++++.||.|++||++...... .......+|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----------------------~~~~~~~~~ 141 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----------------------VCKHIKKPI 141 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE----------------------EEEEECTTC
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce----------------------eeeeeeccc
Confidence 8755544 6789999999999999999999999999999987543100 122333578
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q psy2685 203 YNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER 282 (992)
Q Consensus 203 ~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~ 282 (992)
...|.+++|+|++++|++++.|+.|++||+.......... ...++ ....+++.+..+..|...
T Consensus 142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA---PTPWG--------------SKMPFGELMFESSSSCGW 204 (372)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC---CBTTB--------------SCCCTTCEEEECCCCSSC
T ss_pred CCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc---ccccc--------------cccchhhheEecCCCCCe
Confidence 8999999999999999999999999999986432110000 00000 013456778888889999
Q ss_pred EEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccC
Q psy2685 283 FWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 362 (992)
Q Consensus 283 V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspd 362 (992)
+.+++|+|++++|++|+.++.+ ++||+.+++... .+. .|..+|.+++|+|+
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i--------------------------~i~d~~~~~~~~--~~~-~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTV--------------------------CLADADKKMAVA--TLA-SETLPLLAVTFITE 255 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEE--------------------------EEEEGGGTTEEE--EEE-CSSCCEEEEEEEET
T ss_pred EEEEEECCCCCEEEEEeCCCEE--------------------------EEEECCCCceeE--EEc-cCCCCeEEEEEecC
Confidence 9999999999999999876643 446766555332 332 45778999999999
Q ss_pred CCEEEEEecCCccccCCeEEEEEeCC--Cc-----------------------------ccc--------ceeccCcccc
Q psy2685 363 EHSILVTTRNANNFENSTYDLYMIPK--EE-----------------------------SER--------KEVADGKRST 403 (992)
Q Consensus 363 g~~lav~~~~~~~~~~g~i~i~~l~~--~~-----------------------------~~~--------~~~~~~~~~~ 403 (992)
+.+++++ . ++.+.+|++.. .. ... ......+...
T Consensus 256 ~~~l~~~-~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 256 SSLVAAG-H------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp TEEEEEE-T------TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred CCEEEEE-e------CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 9988877 3 37999999876 21 000 1111245566
Q ss_pred ceEEEEe-cC----CeEEEEEcCCeEEEEEcCC
Q psy2685 404 GISAVWV-AR----NRFAVLDRNHTILIKNLKN 431 (992)
Q Consensus 404 ~~s~~w~-~~----~~~av~~~~g~I~i~dl~~ 431 (992)
+..+.|. ++ +.++.+..+|.|.+|++++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 7777776 44 5777788899999999865
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2e-27 Score=275.74 Aligned_cols=276 Identities=17% Similarity=0.303 Sum_probs=226.8
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc--cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q psy2685 53 PVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL--GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV 130 (992)
Q Consensus 53 ~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~ 130 (992)
.++.|+||++ +.|++|. |++|+|||..+++....+. +|.+.|++++|+|+|++|++|+.||+|++||+++++++..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999976 4777765 8999999999998887664 6778899999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEE
Q psy2685 131 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVL 210 (992)
Q Consensus 131 l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~ 210 (992)
+.+|...+.+++|+ +..+++|+.|+.+++||..... ..+..+.+|...+..+.
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~-------------------------~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE-------------------------HHVATLSGHSQEVCGLR 237 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-------------------------CEEEEEECCSSCEEEEE
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc-------------------------eeeEEecccccceeeee
Confidence 99999999998886 5799999999999999987533 25677889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCe----eeeEeeccCcccc--------cCEEEE--EeCCCeEEEEECCCCeEEEEe
Q psy2685 211 FHPKSEVIVSNAEDKSIRLWDMTKRT----CLNTFRREQERFW--------SEVIVS--NAEDKSIRLWDMTKRTCLNTF 276 (992)
Q Consensus 211 fspdg~~L~s~s~Dg~I~vwdl~~~~----~l~~~~~~~~~~~--------s~~l~s--gs~Dg~I~vwd~~t~~~v~~l 276 (992)
|+|++.++++++.|+.+++|+..+++ .+.....+...+. ..++++ |+.|++|++||+.+++++..+
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 99999999999999999999998764 2344444444332 245554 457999999999999998888
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCcccee
Q psy2685 277 RREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHS 356 (992)
Q Consensus 277 ~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~ 356 (992)
..+ ..+.++.|+|+++.+++++. ..++.|++||+.+++. +..+ .+|...|.+
T Consensus 318 ~~~-~~v~~~~~~~~~~~lv~~sg------------------------~~d~~I~iwd~~~~~~--v~~l-~gH~~~V~~ 369 (420)
T 4gga_A 318 DAH-SQVCSILWSPHYKELISGHG------------------------FAQNQLVIWKYPTMAK--VAEL-KGHTSRVLS 369 (420)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEEC------------------------TTTCCEEEEETTTCCE--EEEE-CCCSSCEEE
T ss_pred ccc-cceeeeeecCCCCeEEEEEe------------------------cCCCEEEEEECCCCcE--EEEE-cCCCCCEEE
Confidence 655 57889999999998887653 1234556677765543 4444 368899999
Q ss_pred EEEccCCCEEEEEecCCccccCCeEEEEEeCCCcc
Q psy2685 357 ISYNATEHSILVTTRNANNFENSTYDLYMIPKEES 391 (992)
Q Consensus 357 lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~ 391 (992)
++|+|||++|++++.+ +++++|++.+...
T Consensus 370 l~~spdg~~l~S~s~D------~tvriWdv~~~~~ 398 (420)
T 4gga_A 370 LTMSPDGATVASAAAD------ETLRLWRCFELDP 398 (420)
T ss_dssp EEECTTSSCEEEEETT------TEEEEECCSCSSC
T ss_pred EEEcCCCCEEEEEecC------CeEEEEECCCCCc
Confidence 9999999999998865 9999999876543
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-28 Score=274.20 Aligned_cols=262 Identities=16% Similarity=0.178 Sum_probs=213.8
Q ss_pred CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC--CCeEEEEEccCCCCEEEEEEecC--CCEEEEEECCCe
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK--QRKCIFTLLGHLDYIRTTFFHHE--YPWILSASDDQT 116 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~ 116 (992)
|+++..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+.+|.+.|++++|+|+ +.+|++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34566788999999999999999999999999999999998 56777888999999999999977 899999999999
Q ss_pred EEEEECCCCe--eEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCc
Q psy2685 117 IRIWNWQSRN--CICVLTGHNHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSK 192 (992)
Q Consensus 117 I~vwdl~t~~--~i~~l~~h~~~V~sl~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~ 192 (992)
|++||+.+++ .+..+.+|...|.+++|+|+ ++++++++.||.|++||+.....
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----------------------- 137 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----------------------- 137 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----------------------
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----------------------
Confidence 9999999987 77888889999999999999 89999999999999999976421
Q ss_pred ceEEEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCC
Q psy2685 193 AWEVDIFRGHYNNVSCVLFHP-------------KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAED 259 (992)
Q Consensus 193 ~~~i~~l~~h~~~V~~v~fsp-------------dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~D 259 (992)
.....+.+|...|.++.|+| ++.++++++.|+.|++||+.++...
T Consensus 138 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------------- 195 (379)
T 3jrp_A 138 -TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--------------------- 195 (379)
T ss_dssp -CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE---------------------
T ss_pred -eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc---------------------
Confidence 13345678999999999999 6888999999999888887543211
Q ss_pred CeEEEEECCCCeEEEEeecCCCCEEEEEEeCC---CCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEee
Q psy2685 260 KSIRLWDMTKRTCLNTFRREQERFWVLVAHPT---LNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLT 336 (992)
Q Consensus 260 g~I~vwd~~t~~~v~~l~~h~~~V~~la~spd---g~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~ 336 (992)
......+.+|...|.+++|+|+ +++|++|+.++.+ ++||+.
T Consensus 196 ----------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i--------------------------~iwd~~ 239 (379)
T 3jrp_A 196 ----------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC--------------------------IIWTQD 239 (379)
T ss_dssp ----------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE--------------------------EEEEES
T ss_pred ----------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE--------------------------EEEeCC
Confidence 1235567788999999999999 8999998876643 345555
Q ss_pred CCCceEEEEee--cCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 337 NSKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 337 ~~~~~~v~~l~--~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
++.......+. ..+...|.+++|+|+|+++++++.+ |.+++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS------SSEEEEEEEET
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC------CcEEEEeCCCC
Confidence 44322222222 2367889999999999999998765 99999998743
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.3e-29 Score=284.81 Aligned_cols=258 Identities=12% Similarity=0.164 Sum_probs=198.8
Q ss_pred eccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC--eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 47 FDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR--KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS 124 (992)
Q Consensus 47 ~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t 124 (992)
+..+.++|++++|+|++++|++|+.||.|++||+.++ +....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4447789999999999999999999999999999988 77788889999999999999999999999999999999998
Q ss_pred Ce---eEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEec
Q psy2685 125 RN---CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201 (992)
Q Consensus 125 ~~---~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~ 201 (992)
++ +...+.+|...|.+++|+|+++.|++++.|++|++||++..... .....+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------------~~~~~~~~ 143 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-----------------------WVSKHLKR 143 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-----------------------CCCEEECS
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-----------------------eeeeEeec
Confidence 77 67778889999999999999999999999999999998764310 12344556
Q ss_pred -cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy2685 202 -HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ 280 (992)
Q Consensus 202 -h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~ 280 (992)
|...|.+++|+|++++|++++.|++|++||+..+......... .++. .+..++++..+ .|.
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS---VWGS--------------RLPFNTVCAEY-PSG 205 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC---SSCS--------------CCCEEEEEECC-CCS
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc---cccc--------------ccchhhhhhcc-cCC
Confidence 9999999999999999999999999999998754321111000 0000 11234566667 889
Q ss_pred CCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceE--EEEeecCCCccceeEE
Q psy2685 281 ERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSV--VMQLRGGGRIPAHSIS 358 (992)
Q Consensus 281 ~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~--v~~l~~~~~~~I~~la 358 (992)
..|.+++|+|++++|++|+.++.+ ++||+.+++... +..+ ..|..+|.+++
T Consensus 206 ~~v~~~~~sp~~~~l~~~~~d~~i--------------------------~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~ 258 (377)
T 3dwl_C 206 GWVHAVGFSPSGNALAYAGHDSSV--------------------------TIAYPSAPEQPPRALITV-KLSQLPLRSLL 258 (377)
T ss_dssp SSEEEEEECTTSSCEEEEETTTEE--------------------------C-CEECSTTSCEEECCCE-ECSSSCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeCCCcE--------------------------EEEECCCCCCcceeeEee-cCCCCceEEEE
Confidence 999999999999999999876644 446666555421 1122 35678899999
Q ss_pred EccCCCEEEEEecC
Q psy2685 359 YNATEHSILVTTRN 372 (992)
Q Consensus 359 fspdg~~lav~~~~ 372 (992)
|+|+|+++++++.+
T Consensus 259 ~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 259 WANESAIVAAGYNY 272 (377)
T ss_dssp EEETTEEEEEESSS
T ss_pred EcCCCCEEEEEcCC
Confidence 99999999888654
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.8e-28 Score=281.76 Aligned_cols=262 Identities=12% Similarity=0.116 Sum_probs=218.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe---EEEEecc-------------------------------------
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT---LLEKFDE------------------------------------- 49 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~---~~~~~~~------------------------------------- 49 (992)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 58899999999998 6555543
Q ss_pred -----------------CCCCEEEEEEecCCCEE-EEEECCCeEEEEEcC--CCeEEEEEc--cCCCCEEEEEEecCCCE
Q psy2685 50 -----------------HEGPVRGICFHNQQPIF-VSGGDDYKIKVWNYK--QRKCIFTLL--GHLDYIRTTFFHHEYPW 107 (992)
Q Consensus 50 -----------------h~~~V~~l~fspdg~~L-asgs~Dg~I~VWd~~--t~~~~~~l~--~h~~~V~~i~fspd~~~ 107 (992)
|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999999996 889999999999999 888887776 56789999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeEE----EEecCCCCeEEEEEecC---CCEEEEEECCCeEEEEECCCCccccccCCcccCC
Q psy2685 108 ILSASDDQTIRIWNWQSRNCIC----VLTGHNHYVMCAQFHPT---DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADD 180 (992)
Q Consensus 108 L~sgs~Dg~I~vwdl~t~~~i~----~l~~h~~~V~sl~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d 180 (992)
|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++|+.|++|++||+.+...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----------- 232 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----------- 232 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-----------
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-----------
Confidence 9999999999999998876543 67789999999999999 89999999999999999875321
Q ss_pred CeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccC---------------
Q psy2685 181 RQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ--------------- 245 (992)
Q Consensus 181 ~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~--------------- 245 (992)
....+.+|.+.|.+++|+ ++++|++++.|++|++||+.+++++..+..+.
T Consensus 233 --------------~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 233 --------------VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp --------------EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---
T ss_pred --------------eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccc
Confidence 222256899999999999 99999999999999999999999888876431
Q ss_pred ----------ccc-------ccCEEEEEe-CCCeEEEEEC--CCC---eEEEEeecCCCCEEEEEEeCCCCEEEEEE
Q psy2685 246 ----------ERF-------WSEVIVSNA-EDKSIRLWDM--TKR---TCLNTFRREQERFWVLVAHPTLNLFAAGH 299 (992)
Q Consensus 246 ----------~~~-------~s~~l~sgs-~Dg~I~vwd~--~t~---~~v~~l~~h~~~V~~la~spdg~~Lasgs 299 (992)
..+ .+.++++++ .|+.|++|++ .++ ..+..+..+ ..+.+++|+|++.++++++
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp -------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 001 136888888 8999999999 565 677788877 8899999999654444433
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=284.00 Aligned_cols=307 Identities=15% Similarity=0.233 Sum_probs=223.3
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe-----------EEEEEccCC------------CCEEEEEEecCC-
Q psy2685 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK-----------CIFTLLGHL------------DYIRTTFFHHEY- 105 (992)
Q Consensus 50 h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~------------~~V~~i~fspd~- 105 (992)
+.+.|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999998877 577888998 889999999998
Q ss_pred -CEEEEEECCCeEEEEECCCCeeE---------------------------------------EE-EecCCCCeEEEEEe
Q psy2685 106 -PWILSASDDQTIRIWNWQSRNCI---------------------------------------CV-LTGHNHYVMCAQFH 144 (992)
Q Consensus 106 -~~L~sgs~Dg~I~vwdl~t~~~i---------------------------------------~~-l~~h~~~V~sl~fs 144 (992)
..+++++.|++|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764432 12 35799999999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC-CEEEEEeC
Q psy2685 145 PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS-EVIVSNAE 223 (992)
Q Consensus 145 pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg-~~L~s~s~ 223 (992)
|++++|++| .|++|++||++... ..+.+++.... .+.+|...|.+++|+|++ ++|++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~------------~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITD------------RSFNIVDIKPA------NMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEE------------EEEEEEECCCS------SGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred CCCCEEEEe-CCCeEEEEECCCCC------------ceeeeeecccc------cccccCcceEEEEECCCCCcEEEEEeC
Confidence 999999998 79999999997321 12222222111 256899999999999998 99999999
Q ss_pred CCeEEEEECCCCee----eeEeeccCc------------ccc-------cCEEEEEeCCCeEEEEECCC-CeEEEEeecC
Q psy2685 224 DKSIRLWDMTKRTC----LNTFRREQE------------RFW-------SEVIVSNAEDKSIRLWDMTK-RTCLNTFRRE 279 (992)
Q Consensus 224 Dg~I~vwdl~~~~~----l~~~~~~~~------------~~~-------s~~l~sgs~Dg~I~vwd~~t-~~~v~~l~~h 279 (992)
||.|++||+.+++. +..+..+.. .+. +.++++++. +.|++||+.+ ++++..+..|
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 99999999999876 677776654 332 378899888 9999999997 8888888777
Q ss_pred CCC---------------EEEEEEeCCCCEEEEEECCCEE-EEEecCCcceEE-eeccEE---EEEeCCeEEEEEeeCCC
Q psy2685 280 QER---------------FWVLVAHPTLNLFAAGHDAGMV-VFKFERERPAYT-VHNNVM---YYVKERFLHRLDLTNSK 339 (992)
Q Consensus 280 ~~~---------------V~~la~spdg~~Lasgsddgii-vw~l~~~~~~~~-~~~~~v---~~~~~~~i~i~dl~~~~ 339 (992)
... +..++|+|++++|++|+.|+.+ +|++.+.+.... .+.... .....+.+ .......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 404 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV--CASGKRK 404 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCE--ECSSCCC
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccc--cccCCcc
Confidence 532 2348999999999999887754 788776554311 000000 00000000 0000000
Q ss_pred ceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEE
Q psy2685 340 DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 340 ~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~ 385 (992)
..............|..++|+|+|..||+++.+ .+.+|.
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~-------~~~~~~ 443 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTN-------NLYIFQ 443 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS-------CEEEEE
T ss_pred cccccccccccCCceeEEEECCCCCEEEEEecc-------eeeeec
Confidence 000000011235578899999999999999875 466664
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=4.4e-27 Score=259.61 Aligned_cols=273 Identities=16% Similarity=0.288 Sum_probs=220.6
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc--cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q psy2685 54 VRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL--GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131 (992)
Q Consensus 54 V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l 131 (992)
.++|+||+++ .|++| .|++|+|||+.+++++..+. +|...|++++|+|+++++++|+.||+|++||+++++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999886 67665 58999999999999887765 67788999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEE
Q psy2685 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLF 211 (992)
Q Consensus 132 ~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~f 211 (992)
.+|...+.++.+. +..+++++.++.+++|+..... .....+.+|...+.++.+
T Consensus 106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE-------------------------HHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-------------------------CEEEEEECCSSCEEEEEE
T ss_pred cCccceEEEeecC--CCEEEEEecCCceEeeecCCCc-------------------------eeEEEEcCccCceEEEEE
Confidence 9999988876654 6799999999999999976533 256778899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeee----eEeeccCcccc--------cC--EEEEEeCCCeEEEEECCCCeEEEEee
Q psy2685 212 HPKSEVIVSNAEDKSIRLWDMTKRTCL----NTFRREQERFW--------SE--VIVSNAEDKSIRLWDMTKRTCLNTFR 277 (992)
Q Consensus 212 spdg~~L~s~s~Dg~I~vwdl~~~~~l----~~~~~~~~~~~--------s~--~l~sgs~Dg~I~vwd~~t~~~v~~l~ 277 (992)
+++++++++++.|++|++||+.+++.. .....+...+. .. .+++++.++.|++||..........
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~- 237 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV- 237 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-
Confidence 999999999999999999999886532 22222222221 12 3456778899999999988776554
Q ss_pred cCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeE
Q psy2685 278 REQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSI 357 (992)
Q Consensus 278 ~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~l 357 (992)
.+...+..+.|+|++..+++++. ..++.|++||+.+++. +..+ .+|...|+++
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~~sg------------------------~~d~~i~iwd~~~~~~--~~~l-~gH~~~V~~l 290 (318)
T 4ggc_A 238 DAHSQVCSILWSPHYKELISGHG------------------------FAQNQLVIWKYPTMAK--VAEL-KGHTSRVLSL 290 (318)
T ss_dssp ECSSCEEEEEEETTTTEEEEEEC------------------------TTTCCEEEEETTTCCE--EEEE-CCCSSCEEEE
T ss_pred cceeeeeeeeecccccceEEEEE------------------------cCCCEEEEEECCCCcE--EEEE-cCCCCCEEEE
Confidence 46678999999999998887652 1244556678766553 3444 3688999999
Q ss_pred EEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 358 SYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 358 afspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
+|+|+|++|++++.+ |++++|++.+.
T Consensus 291 ~~spdg~~l~S~s~D------~~v~iWd~~~~ 316 (318)
T 4ggc_A 291 TMSPDGATVASAAAD------ETLRLWRCFEL 316 (318)
T ss_dssp EECTTSSCEEEEETT------TEEEEECCSCC
T ss_pred EEcCCCCEEEEEecC------CeEEEEECCCC
Confidence 999999999998865 99999998653
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-27 Score=274.58 Aligned_cols=240 Identities=17% Similarity=0.312 Sum_probs=207.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC-CCeEE
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK-QRKCI 86 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~-t~~~~ 86 (992)
|...|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++.+++|+.||.|++||++ .+...
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence 78999999999999999999999999999999999999999999999999995 5699999999999999998 56778
Q ss_pred EEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCC-CEEEEEE--CCCeEEEEE
Q psy2685 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSAS--LDQTIRVWD 163 (992)
Q Consensus 87 ~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs--~Dg~I~iwd 163 (992)
..+.+|.+.|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++ .++++++ .|+.|++||
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 8889999999999999999999999999999999999999999999999999999999977 5666655 799999999
Q ss_pred CCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeeEe
Q psy2685 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA--EDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 164 ~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~vwdl~~~~~l~~~ 241 (992)
+.+.. ....+ .+...|.+++|+|++.++++++ .||.|++||+.++...
T Consensus 291 ~~~~~--------------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--- 340 (401)
T 4aez_A 291 AATGA--------------------------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--- 340 (401)
T ss_dssp TTTCC--------------------------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE---
T ss_pred CCCCC--------------------------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce---
Confidence 87542 23333 3567899999999999999854 7899999986654321
Q ss_pred eccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE-EEEec
Q psy2685 242 RREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV-VFKFE 309 (992)
Q Consensus 242 ~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgii-vw~l~ 309 (992)
....+.+|...|.+++|+|++++|++|+.||.+ +|++.
T Consensus 341 ------------------------------~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 341 ------------------------------KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ------------------------------EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ------------------------------eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 233456788899999999999999999877654 45443
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.9e-29 Score=287.88 Aligned_cols=272 Identities=17% Similarity=0.258 Sum_probs=220.1
Q ss_pred CEEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCe----EEEEeccCCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCC-
Q psy2685 11 RVKGLSFHPKRPWIL-SSLHNGVIQLWDYRMNT----LLEKFDEHEGPVRGICFHN-QQPIFVSGGDDYKIKVWNYKQR- 83 (992)
Q Consensus 11 ~V~~iafspdg~~La-sg~~dg~I~IWd~~~g~----~~~~~~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~VWd~~t~- 83 (992)
....++++|+...++ +++.+|.|.||++.... ....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345688998876544 57889999999986542 2345678999999999999 9999999999999999999887
Q ss_pred ------eEEEEEccCCCCEEEEEEecCC-CEEEEEECCCeEEEEECCCCeeEEEE--ecCCCCeEEEEEecCCCEEEEEE
Q psy2685 84 ------KCIFTLLGHLDYIRTTFFHHEY-PWILSASDDQTIRIWNWQSRNCICVL--TGHNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 84 ------~~~~~l~~h~~~V~~i~fspd~-~~L~sgs~Dg~I~vwdl~t~~~i~~l--~~h~~~V~sl~fspdg~~L~sgs 154 (992)
+.+..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.+..+ .+|...|.+++|+|+++.|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5678889999999999999998 69999999999999999999999999 88999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEE-eccCCC-eEEEEEcCCCCEEEEE---eCCCeEEE
Q psy2685 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF-RGHYNN-VSCVLFHPKSEVIVSN---AEDKSIRL 229 (992)
Q Consensus 155 ~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l-~~h~~~-V~~v~fspdg~~L~s~---s~Dg~I~v 229 (992)
.||.|++||+++.. .+..+ .+|.+. +.++.|+|++.+|++| +.|+.|++
T Consensus 196 ~d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 196 RDKRVRVIEPRKGT--------------------------VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp TTSEEEEEETTTTE--------------------------EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred cCCcEEEEeCCCCc--------------------------eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 99999999987642 34445 677766 8999999999999999 79999999
Q ss_pred EECCCCee-eeEee-ccCcccc-------cCEEE-EEeCCCeEEEEECCCCeE-EEEeec--CCCCEEEEEEeCCCCEEE
Q psy2685 230 WDMTKRTC-LNTFR-REQERFW-------SEVIV-SNAEDKSIRLWDMTKRTC-LNTFRR--EQERFWVLVAHPTLNLFA 296 (992)
Q Consensus 230 wdl~~~~~-l~~~~-~~~~~~~-------s~~l~-sgs~Dg~I~vwd~~t~~~-v~~l~~--h~~~V~~la~spdg~~La 296 (992)
||+.++.. +.... .+...+. +..++ +|+.|+.|++||+.+++. +..+.. +...+.+++|+|++.+++
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence 99998654 33332 1222221 25564 566899999999998873 444443 458899999999999877
Q ss_pred EEECCCEEEEEec
Q psy2685 297 AGHDAGMVVFKFE 309 (992)
Q Consensus 297 sgsddgiivw~l~ 309 (992)
++ ++.+.+|++.
T Consensus 330 s~-~~~~~~~~l~ 341 (402)
T 2aq5_A 330 NK-CEIARFYKLH 341 (402)
T ss_dssp GG-TEEEEEEEEE
T ss_pred ec-ceeEEEEEcC
Confidence 53 3234444443
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2e-28 Score=281.93 Aligned_cols=297 Identities=12% Similarity=0.124 Sum_probs=210.9
Q ss_pred CCEEEEEEc---CCCCEEEEEEcCCeEEEEEcCCC----------eEEEEeccCCCCEEEEEEe----------------
Q psy2685 10 ARVKGLSFH---PKRPWILSSLHNGVIQLWDYRMN----------TLLEKFDEHEGPVRGICFH---------------- 60 (992)
Q Consensus 10 ~~V~~iafs---pdg~~Lasg~~dg~I~IWd~~~g----------~~~~~~~~h~~~V~~l~fs---------------- 60 (992)
....++.|. |++..+++++.++.|.+|+.... ..+..+ .+..++..+.|+
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcce
Confidence 456778884 44544555566889999975311 111222 244455555554
Q ss_pred ----cCCCEEEEEECCCeEEEEEcCCCeEEE-----EEccCCCCEEEEEEec--------CCCEEEEEECCCeEEEEECC
Q psy2685 61 ----NQQPIFVSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTFFHH--------EYPWILSASDDQTIRIWNWQ 123 (992)
Q Consensus 61 ----pdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~V~~i~fsp--------d~~~L~sgs~Dg~I~vwdl~ 123 (992)
+++.++++|+.|++|++||.+++.... .+.+|.+.|.+++|+| ++++|++|+.|++|++||++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 445589999999999999999886543 2468999999999998 78899999999999999999
Q ss_pred CCeeEEEEecCCCCeEEEEEecCC-CEEEEEECCCeEEEEECCCCccccccCC--cccCCCeEEEEEccCCcceEEEEEe
Q psy2685 124 SRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNVAPG--MGADDRQIKLWRMNDSKAWEVDIFR 200 (992)
Q Consensus 124 t~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~~d~~I~iwd~~~~~~~~i~~l~ 200 (992)
++.++..+.+|..+|.+++|+|++ .+|++|+.||+|++||+++......... .......+ ..............
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL---TLNTLPLVNTCHSS 251 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE---EEESGGGC------
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE---ecccccceeeeecc
Confidence 998888888999999999999987 5899999999999999987544322111 00000111 11111111233456
Q ss_pred ccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCccc---------------------------ccCE
Q psy2685 201 GHYNNVSCVLFH-PKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF---------------------------WSEV 252 (992)
Q Consensus 201 ~h~~~V~~v~fs-pdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~---------------------------~s~~ 252 (992)
+|...+.++.|+ |++..|++++.|+++++||+..+.....+..+.... ...+
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 788999999987 799999999999999999998866554443322111 0136
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecC
Q psy2685 253 IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFER 310 (992)
Q Consensus 253 l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~ 310 (992)
+++|+.||.|++||+.++..+..+..|..+|.+++|||||++||+++++|+++|++..
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 7788899999999999999888888899999999999999999999999999988743
No 105
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.8e-28 Score=273.38 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=201.4
Q ss_pred EeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe--EEEEEccCCCCEEEEEEec--CCCEEEEEECCCeEEEEE
Q psy2685 46 KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK--CIFTLLGHLDYIRTTFFHH--EYPWILSASDDQTIRIWN 121 (992)
Q Consensus 46 ~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~i~fsp--d~~~L~sgs~Dg~I~vwd 121 (992)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++ .+..+.+|.++|.+++|+| ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998875 4677899999999999976 488999999999999999
Q ss_pred CCCC--eeEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 122 WQSR--NCICVLTGHNHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 122 l~t~--~~i~~l~~h~~~V~sl~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
++++ .....+.+|...|.+++|+|+ +.+|++|+.|++|++||+++... | ....
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~----------------~-------~~~~ 144 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ----------------W-------EVKK 144 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC----------------E-------EECC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC----------------c-------ceee
Confidence 9886 466778899999999999998 78999999999999999875321 0 0123
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCC---eEEE
Q psy2685 198 IFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKR---TCLN 274 (992)
Q Consensus 198 ~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~---~~v~ 274 (992)
.+.+|...|.++.|+|++.. +.+ .+...+ .....+.++++|+.|+.|++||+.++ +++.
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~-------~~~--~~~~~~---------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 206 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVP-------GSL--IDHPSG---------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ 206 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC---------------CCS---------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE
T ss_pred eeccccCCcceEEEccccCC-------ccc--cccccc---------cCccccceEEEecCCCeEEEEEeCCCCccceee
Confidence 34678899999999998520 000 000000 00112356788888888888888654 4677
Q ss_pred EeecCCCCEEEEEEeCCC----CEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCc--eEEEEeec
Q psy2685 275 TFRREQERFWVLVAHPTL----NLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKD--SVVMQLRG 348 (992)
Q Consensus 275 ~l~~h~~~V~~la~spdg----~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~--~~v~~l~~ 348 (992)
++.+|.+.|.+++|+|++ ++|++|+.|+.+ ++|++.+... .....+ .
T Consensus 207 ~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v--------------------------~iw~~~~~~~~~~~~~~~-~ 259 (316)
T 3bg1_A 207 KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV--------------------------FIWTCDDASSNTWSPKLL-H 259 (316)
T ss_dssp CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE--------------------------EEEECSSTTCCCCBCCEE-E
T ss_pred ecccCCCceEEEEecCCCCCCCceEEEEcCCCeE--------------------------EEEEccCccccchhhhhh-h
Confidence 788999999999999987 789999876643 3355543110 000011 2
Q ss_pred CCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 349 GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 349 ~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
.|...|++++|+|+|+.|++++.+ +.+++|+...
T Consensus 260 ~~~~~v~~v~~sp~g~~las~~~D------~~v~lw~~~~ 293 (316)
T 3bg1_A 260 KFNDVVWHVSWSITANILAVSGGD------NKVTLWKESV 293 (316)
T ss_dssp ECSSCEEEEEECTTTCCEEEEESS------SCEEEEEECT
T ss_pred cCCCcEEEEEEcCCCCEEEEEcCC------CeEEEEEECC
Confidence 357789999999999999999865 9999999753
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=6.8e-27 Score=272.38 Aligned_cols=276 Identities=22% Similarity=0.402 Sum_probs=230.0
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCee
Q psy2685 48 DEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC 127 (992)
Q Consensus 48 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~ 127 (992)
..|...|.+++| +++++++|+.||.|++||..+++....+.+|.+.|.+++| ++.++++|+.||+|++||+.++++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 356677888776 7889999999999999999999999999999999999998 778999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeE
Q psy2685 128 ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207 (992)
Q Consensus 128 i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~ 207 (992)
+..+.+|...|.+++|++ +.+++|+.||+|++||+.+.... .....+.+|...|.
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI-----------------------TLRRVLVGHRAAVN 260 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-----------------------EEEEEECCCSSCEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-----------------------eeeeEecCCCCcEE
Confidence 999999999999999974 59999999999999999764321 13456788999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-----cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q psy2685 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-----SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER 282 (992)
Q Consensus 208 ~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~ 282 (992)
++.| +++++++++.||.|++||+.+++.+..+..+...+. +..+++|+.||.|++||+.+++++.++.+|...
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 338 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 338 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence 9999 678999999999999999999999999988776554 489999999999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCc-------eEEEEeecCCCccce
Q psy2685 283 FWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKD-------SVVMQLRGGGRIPAH 355 (992)
Q Consensus 283 V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~-------~~v~~l~~~~~~~I~ 355 (992)
|.+++| ++.+|++|+.+|.+ ++||+.++.. ..+..+ .+|...|.
T Consensus 339 v~~~~~--~~~~l~sg~~dg~i--------------------------~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~ 389 (435)
T 1p22_A 339 VRCIRF--DNKRIVSGAYDGKI--------------------------KVWDLVAALDPRAPAGTLCLRTL-VEHSGRVF 389 (435)
T ss_dssp EEEEEC--CSSEEEEEETTSCE--------------------------EEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCC
T ss_pred EEEEEe--cCCEEEEEeCCCcE--------------------------EEEECCCCCCccccccchheeec-cCCCCCeE
Confidence 999998 78899999876643 3344433221 123333 36788999
Q ss_pred eEEEccCCCEEEEEecCCccccCCeEEEEEeCCCcc
Q psy2685 356 SISYNATEHSILVTTRNANNFENSTYDLYMIPKEES 391 (992)
Q Consensus 356 ~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~ 391 (992)
+++| ++..+++++.+ |.+++|++...+.
T Consensus 390 ~l~~--~~~~l~s~s~D------g~i~iwd~~~~~~ 417 (435)
T 1p22_A 390 RLQF--DEFQIVSSSHD------DTILIWDFLNDPA 417 (435)
T ss_dssp CEEE--CSSCEEECCSS------SEEEEEC------
T ss_pred EEEe--CCCEEEEEeCC------CEEEEEECCCCCC
Confidence 9999 77888877654 9999999876543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=5.2e-27 Score=263.80 Aligned_cols=279 Identities=13% Similarity=0.183 Sum_probs=221.2
Q ss_pred EEEcCCCeEEEEeccCCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCC-CeEE-EEEccCCCCEEEEEEecCCCEEE
Q psy2685 35 LWDYRMNTLLEKFDEHEGPVRGICFHNQ---QPIFVSGGDDYKIKVWNYKQ-RKCI-FTLLGHLDYIRTTFFHHEYPWIL 109 (992)
Q Consensus 35 IWd~~~g~~~~~~~~h~~~V~~l~fspd---g~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~V~~i~fspd~~~L~ 109 (992)
.|+....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+.+|.+.|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3455666777888999999999999999 59999999999999999987 5544 77889999999999999999999
Q ss_pred EEECCCeEEEEECCCCeeEEEEecCCCCeEEEEE--ecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEE
Q psy2685 110 SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF--HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWR 187 (992)
Q Consensus 110 sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~f--spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd 187 (992)
+|+.||.|++||+++++.+. +.+|...|.+++| +|+++++++++.||.|++||+++.+
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------------- 162 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN------------------- 162 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-------------------
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-------------------
Confidence 99999999999999988776 5569999999999 8899999999999999999997643
Q ss_pred ccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe-ecc---Ccccc---------cCEEE
Q psy2685 188 MNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF-RRE---QERFW---------SEVIV 254 (992)
Q Consensus 188 ~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~-~~~---~~~~~---------s~~l~ 254 (992)
....+..| ..+.++.+.+ ..+++++.|+.+.+|++......... ... ..... ...++
T Consensus 163 -------~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 163 -------PMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp -------CSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred -------EEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence 22333333 3566666664 57888999999999999875432221 111 11110 13399
Q ss_pred EEeCCCeEEEEECCCC---eEEEEeecCCC------------CEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeec
Q psy2685 255 SNAEDKSIRLWDMTKR---TCLNTFRREQE------------RFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHN 319 (992)
Q Consensus 255 sgs~Dg~I~vwd~~t~---~~v~~l~~h~~------------~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~ 319 (992)
+++.|+.|++||+... ..+..+..|.. .|++++|+|++++|++|+.||.+
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i--------------- 297 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF--------------- 297 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE---------------
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeE---------------
Confidence 9999999999999987 55677777765 79999999999999999876643
Q ss_pred cEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecC
Q psy2685 320 NVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRN 372 (992)
Q Consensus 320 ~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~ 372 (992)
++||+.+++. +..+ ..|..+|.+++|+|+|++|++++.+
T Consensus 298 -----------~iwd~~~~~~--~~~~-~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 298 -----------SFWDKDARTK--LKTS-EQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp -----------EEEETTTTEE--EEEC-CCCSSCEEEEEECTTSSCEEEEECC
T ss_pred -----------EEEECCCCcE--EEEe-cCCCCCceEEEECCCCCeEEEEecc
Confidence 4466654432 3333 2568899999999999999999875
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2e-27 Score=276.88 Aligned_cols=261 Identities=18% Similarity=0.344 Sum_probs=215.9
Q ss_pred EEeecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEEcCC----------CeEEEEeccCCCCEEEEEEecCCC-EEEEEE
Q psy2685 3 TKFETKSARVKGLSFHPK-RPWILSSLHNGVIQLWDYRM----------NTLLEKFDEHEGPVRGICFHNQQP-IFVSGG 70 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspd-g~~Lasg~~dg~I~IWd~~~----------g~~~~~~~~h~~~V~~l~fspdg~-~Lasgs 70 (992)
....+|.+.|++++|+|+ +.+|++++.+|.|++||+.+ ...+..+.+|...|.+++|+|+++ +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 356789999999999997 67999999999999999986 567788889999999999999998 999999
Q ss_pred CCCeEEEEEcCCCeE-------EEEEccCCCCEEEEEEec-CCCEEEEEECCCeEEEEECCCC---eeEEEEecCCCCeE
Q psy2685 71 DDYKIKVWNYKQRKC-------IFTLLGHLDYIRTTFFHH-EYPWILSASDDQTIRIWNWQSR---NCICVLTGHNHYVM 139 (992)
Q Consensus 71 ~Dg~I~VWd~~t~~~-------~~~l~~h~~~V~~i~fsp-d~~~L~sgs~Dg~I~vwdl~t~---~~i~~l~~h~~~V~ 139 (992)
.||.|++||+.++.. ...+.+|...|.+++|+| ++..|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987321 356778999999999999 6789999999999999999987 57788889999999
Q ss_pred EEEEecCCC-EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-E
Q psy2685 140 CAQFHPTDD-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-V 217 (992)
Q Consensus 140 sl~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~ 217 (992)
+++|+|++. ++++|+.||+|++||++... .++..+.+|.+.|.+++|+|++. +
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------------------~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK-------------------------LKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT-------------------------SCSEEEECCSSCEEEEEECSSCTTE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------------------CCeEEeecCCCCEEEEEECCCCCCE
Confidence 999999986 78999999999999997632 14556778999999999999985 7
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCC-EEE
Q psy2685 218 IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLN-LFA 296 (992)
Q Consensus 218 L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~-~La 296 (992)
|++++.|+.|++||+............ .+ .....+..+.+|...|.+++|+|+++ +++
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~--------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDA-------------ED--------GPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHH-------------HH--------CCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCcccc-------------cc--------CCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 999999999999998753211100000 00 01245566778889999999999999 889
Q ss_pred EEECCCE-EEEEec
Q psy2685 297 AGHDAGM-VVFKFE 309 (992)
Q Consensus 297 sgsddgi-ivw~l~ 309 (992)
+++.++. .+|++.
T Consensus 396 s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 396 SVSEDNIMQVWQMA 409 (430)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEECCCCEEEeEcc
Confidence 8887774 466654
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=3.6e-27 Score=261.89 Aligned_cols=300 Identities=14% Similarity=0.142 Sum_probs=209.8
Q ss_pred EeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEccCCCCEEEEEEec--CCCEEEEEECCCeEEE
Q psy2685 46 KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR----KCIFTLLGHLDYIRTTFFHH--EYPWILSASDDQTIRI 119 (992)
Q Consensus 46 ~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~V~~i~fsp--d~~~L~sgs~Dg~I~v 119 (992)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++|+.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 45789999999999999999999999999999999876 56777889999999999999 5899999999999999
Q ss_pred EECCCC---------eeEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEc
Q psy2685 120 WNWQSR---------NCICVLTGHNHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRM 188 (992)
Q Consensus 120 wdl~t~---------~~i~~l~~h~~~V~sl~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~ 188 (992)
||++++ +++..+.+|...|.+++|+|+ ++++++++.||.|++||++......... +
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----------~--- 152 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT----------L--- 152 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE----------E---
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc----------c---
Confidence 999887 668888999999999999999 9999999999999999998754322110 0
Q ss_pred cCCcceEEEEEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCee--eeEeeccCcccc-------c----CE
Q psy2685 189 NDSKAWEVDIFRGHYNNVSCVLFHPK---SEVIVSNAEDKSIRLWDMTKRTC--LNTFRREQERFW-------S----EV 252 (992)
Q Consensus 189 ~~~~~~~i~~l~~h~~~V~~v~fspd---g~~L~s~s~Dg~I~vwdl~~~~~--l~~~~~~~~~~~-------s----~~ 252 (992)
............+|...+.++.|+|+ +..+++++.|+.+.+|+...+.. +..+..|...+. + .+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 00000000012367888999999997 89999999999998888887764 566666665543 2 48
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEE
Q psy2685 253 IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHR 332 (992)
Q Consensus 253 l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i 332 (992)
+++++.||.|++||+.++........+.........++....++.+..++.. ...+.+
T Consensus 233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 290 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT----------------------EEKAEL 290 (351)
T ss_dssp EEEEETTSCEEEEEEEECC-------------------------------------------------------------
T ss_pred EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc----------------------ceeeee
Confidence 9999999999999998876554444444444444555555555544332211 111112
Q ss_pred EEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 333 LDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 333 ~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
|+... ...+..+ .+|...|.+++|+|++++|++++.+ |.+++|++...
T Consensus 291 ~~~~~--~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~ 338 (351)
T 3f3f_A 291 QSNLQ--VELLSEH-DDHNGEVWSVSWNLTGTILSSAGDD------GKVRLWKATYS 338 (351)
T ss_dssp CCSEE--EEEEEEE-CTTSSCEEEEEECSSSCCEEEEETT------SCEEEEEECTT
T ss_pred ccccc--ccEEEEE-ecccccEEEEEEcCCCCEEEEecCC------CcEEEEecCcC
Confidence 22211 1122223 3678899999999999999999865 99999999764
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.6e-26 Score=258.20 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=215.6
Q ss_pred EeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe---EEEEEccCCCCEEEEEEecCCC-EEEEEECCCeEEEEE
Q psy2685 46 KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK---CIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWN 121 (992)
Q Consensus 46 ~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~i~fspd~~-~L~sgs~Dg~I~vwd 121 (992)
...+|.+.|.+++|+|++++|++++.||.|++||+.+++ ....+.+|...|.+++|+|++. ++++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345799999999999999999999999999999998876 3455568999999999999999 999999999999999
Q ss_pred C-CCCeeEEEEec--CCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEE
Q psy2685 122 W-QSRNCICVLTG--HNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDI 198 (992)
Q Consensus 122 l-~t~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~ 198 (992)
+ .+++. ..+.+ |...|.+++|+| ++.+++++.|+.|++||+++... ...... . .++..
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~~----~--~~~~~ 146 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD-----------GVIAVK----N--LNSNN 146 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT-----------BCEEEE----E--SCSSS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc-----------cccccc----C--CeeeE
Confidence 9 77754 77788 999999999999 99999999999999999864110 000000 0 01111
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ceee--eEeeccCccc--------ccCEEEEEeCCCeEEEEEC
Q psy2685 199 FRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK-RTCL--NTFRREQERF--------WSEVIVSNAEDKSIRLWDM 267 (992)
Q Consensus 199 l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~-~~~l--~~~~~~~~~~--------~s~~l~sgs~Dg~I~vwd~ 267 (992)
+. |...|.+++|+|++ +++++.|+.|++||+.+ +... .....+...+ .+..+++++.||.|++|++
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 22 77889999999987 99999999999999988 5421 1222222211 3478999999999999999
Q ss_pred CCC------eEEEEeecCCC---------CEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEE
Q psy2685 268 TKR------TCLNTFRREQE---------RFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHR 332 (992)
Q Consensus 268 ~t~------~~v~~l~~h~~---------~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i 332 (992)
... +....+..|.. .|.+++|+|++++|++|+.+|.+ ++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i--------------------------~v 277 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII--------------------------SC 277 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE--------------------------EE
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceE--------------------------EE
Confidence 887 77788887765 99999999999999999876543 34
Q ss_pred EEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecC
Q psy2685 333 LDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRN 372 (992)
Q Consensus 333 ~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~ 372 (992)
||+.+++ .+..+...|..+|.+++ |+|.++++++.+
T Consensus 278 wd~~~~~--~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 278 WNLQTRK--KIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EETTTTE--EEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred EcCccHh--HhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 6664443 23334322378899999 999999999876
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=3.8e-27 Score=271.25 Aligned_cols=244 Identities=18% Similarity=0.285 Sum_probs=205.2
Q ss_pred EEeecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCC-------eEEEEeccCCCCEEEEEEecCC-CEEEEEECCC
Q psy2685 3 TKFETKSARVKGLSFHP-KRPWILSSLHNGVIQLWDYRMN-------TLLEKFDEHEGPVRGICFHNQQ-PIFVSGGDDY 73 (992)
Q Consensus 3 ~~l~~H~~~V~~iafsp-dg~~Lasg~~dg~I~IWd~~~g-------~~~~~~~~h~~~V~~l~fspdg-~~Lasgs~Dg 73 (992)
..+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 35778999999999999 9999999999999999999887 5678888999999999999998 6999999999
Q ss_pred eEEEEEcCCCeEEEEE--ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE-ecCCCC-eEEEEEecCCCE
Q psy2685 74 KIKVWNYKQRKCIFTL--LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL-TGHNHY-VMCAQFHPTDDI 149 (992)
Q Consensus 74 ~I~VWd~~t~~~~~~l--~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l-~~h~~~-V~sl~fspdg~~ 149 (992)
.|++||+.+++.+..+ .+|.+.|.+++|+|++.+|++++.||.|++||+++++.+..+ .+|.+. +.++.|+|++.+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 9999999999999999 889999999999999999999999999999999999999998 788776 899999999999
Q ss_pred EEEE---ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE-EEeCCC
Q psy2685 150 VVSA---SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAEDK 225 (992)
Q Consensus 150 L~sg---s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~-s~s~Dg 225 (992)
+++| +.|+.|++||+++.... .......|...+.++.|+|++++|+ +++.|+
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~~------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEEP------------------------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSSC------------------------SEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred EEEeccCCCCceEEEEcCccccCC------------------------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 9999 78999999998764310 1111235677899999999999886 455799
Q ss_pred eEEEEECCCCee-eeEeeccC--ccccc-------CEEEEEeCCCeEEEEECCCCeE
Q psy2685 226 SIRLWDMTKRTC-LNTFRREQ--ERFWS-------EVIVSNAEDKSIRLWDMTKRTC 272 (992)
Q Consensus 226 ~I~vwdl~~~~~-l~~~~~~~--~~~~s-------~~l~sgs~Dg~I~vwd~~t~~~ 272 (992)
.|++||+.+++. +..+..+. ..+.+ .+++ +.++.+++|++.++..
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~--s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV--NKCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG--GGTEEEEEEEEETTEE
T ss_pred eEEEEEecCCCcceEeecccccCCcccceEEecccccce--ecceeEEEEEcCCCcE
Confidence 999999998773 44444332 22221 2332 4677999999887654
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=4.7e-27 Score=267.88 Aligned_cols=245 Identities=12% Similarity=0.160 Sum_probs=189.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEE-----------cCCeEEEEEcCCCe-EE---EEe-----ccCCCCEEEEEEecCC
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSL-----------HNGVIQLWDYRMNT-LL---EKF-----DEHEGPVRGICFHNQQ 63 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~-----------~dg~I~IWd~~~g~-~~---~~~-----~~h~~~V~~l~fspdg 63 (992)
.|.+|...|.+++++ ++.+++|+ .|+.+++|++.++. .+ ... ..+...+++++|||||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 467888888888775 55676664 46789999976542 11 111 1244569999999999
Q ss_pred CEEEEEE--CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE--EecCCCCeE
Q psy2685 64 PIFVSGG--DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV--LTGHNHYVM 139 (992)
Q Consensus 64 ~~Lasgs--~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~--l~~h~~~V~ 139 (992)
+++++++ .|++|+|||+.+++++..+. |.+.|.+++|+|++.++++++++ .+.+|+..+++.+.. ..+|...|.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEE
Confidence 9877554 68999999999999988875 77889999999999999999865 566777777766543 346888999
Q ss_pred EEEEecCCCEEEEEECCC----eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC
Q psy2685 140 CAQFHPTDDIVVSASLDQ----TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS 215 (992)
Q Consensus 140 sl~fspdg~~L~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg 215 (992)
+++|+|+++.+++++.|+ .++.|+....... ......+.+|...|++++|+|+|
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS----------------------VLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE----------------------EEEEEEEESSCSCEEEEEECTTS
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceec----------------------ceeeeeecCCCCCeEeEEECCCC
Confidence 999999999999999887 5666766442210 01345678899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCEEEEEEeCCCCE
Q psy2685 216 EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTF-RREQERFWVLVAHPTLNL 294 (992)
Q Consensus 216 ~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l-~~h~~~V~~la~spdg~~ 294 (992)
++|++|+.|++|+|||+.+ ++++.++ .+|...|++++|||||++
T Consensus 282 ~~lasgs~D~~V~iwd~~~-----------------------------------~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKD-----------------------------------LSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp CEEEEEETTSCEEEEETTT-----------------------------------TEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred CceEEEcCCCEEEEEECCC-----------------------------------CcEEEEecCcccCCEEEEEECCCCCE
Confidence 9999999999999886654 4455554 679999999999999999
Q ss_pred EEEEECCCEE-EEEec
Q psy2685 295 FAAGHDAGMV-VFKFE 309 (992)
Q Consensus 295 Lasgsddgii-vw~l~ 309 (992)
||+|+.|+.+ +|++.
T Consensus 327 laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 327 VASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSEEEEEECC
T ss_pred EEEEeCCCeEEEEEcC
Confidence 9999877643 55543
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=5.3e-26 Score=257.98 Aligned_cols=314 Identities=10% Similarity=0.149 Sum_probs=215.9
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEE-EEEECCCeEEEEEcC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIF-VSGGDDYKIKVWNYK 81 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~L-asgs~Dg~I~VWd~~ 81 (992)
.++.+|.+.|++++|+|||++|++|+.+| +++||..+++....... ..+..+++.++++.+ ++|+.|++|++||..
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 35688999999999999999999998665 78999988776655432 357888999998877 467778999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCC-eeEEEEecCCCCeEEEEEecCCCEEEE--EECCCe
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR-NCICVLTGHNHYVMCAQFHPTDDIVVS--ASLDQT 158 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~-~~i~~l~~h~~~V~sl~fspdg~~L~s--gs~Dg~ 158 (992)
+++.+..+. |..+|.++.|+++. ++++ .|+.|++||+.++ +.+..+.. +...+++++ ..+++ |+.||+
T Consensus 90 ~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~ 160 (355)
T 3vu4_A 90 KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ 160 (355)
T ss_dssp TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence 999998886 67799999999874 4444 4789999999987 66655554 445566777 56666 588999
Q ss_pred EEEEECCCCccccccCCcccCCCeEEEEEccCCcceE-EEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCe
Q psy2685 159 IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE-VDIFRGHYNNVSCVLFHPKSEVIVSNAEDKS-IRLWDMTKRT 236 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~-i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~-I~vwdl~~~~ 236 (992)
|++||+.+........ ... ......+ ...+.+|.+.|.+++|+|+|++|++++.|++ |++||+.++
T Consensus 161 v~iwd~~~~~~~~~~~------~~~-----~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~- 228 (355)
T 3vu4_A 161 IHITKLQSSGSATTQD------QGV-----QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG- 228 (355)
T ss_dssp EEEEECCC-----------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-
T ss_pred EEEEECCCCCcccccc------ccc-----cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence 9999997643110000 000 0000012 5678899999999999999999999999998 998876554
Q ss_pred eeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEee-c-CCCCEEEEEEeCCCCEEEEEECCCE-EEEEecCCcc
Q psy2685 237 CLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR-R-EQERFWVLVAHPTLNLFAAGHDAGM-VVFKFERERP 313 (992)
Q Consensus 237 ~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~-~-h~~~V~~la~spdg~~Lasgsddgi-ivw~l~~~~~ 313 (992)
+++.++. + |...|.+++|+|++++|++|+.|+. .+|++.....
T Consensus 229 ----------------------------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 229 ----------------------------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp ----------------------------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred ----------------------------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 4455555 4 7889999999999999999998774 5888765432
Q ss_pred eE--EeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 314 AY--TVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 314 ~~--~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
.- ....- + ... -+..........+......+...++|+|||+.+++++.+ |.+++|.+...
T Consensus 275 ~~~~~~~~~--~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d------g~~~~~~~~~~ 337 (355)
T 3vu4_A 275 NKRHALKGW--I-NMK------YFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT------RMIETFKVVFD 337 (355)
T ss_dssp CCSEETTTT--E-ECC------CCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT------TEEEEEEEEEE
T ss_pred cccccccce--e-ecc------ccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC------CeEEEEEEEcC
Confidence 11 00000 0 000 000000111222222233344779999999999988764 89999988654
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-27 Score=263.81 Aligned_cols=255 Identities=12% Similarity=0.115 Sum_probs=202.7
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC---------CCeEE
Q psy2685 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK---------QRKCI 86 (992)
Q Consensus 16 afspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~---------t~~~~ 86 (992)
.+.+++..+++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344678899999999999999999998888776 567888999998 9999999999999665 55544
Q ss_pred EEEc-cCCCCEEEEEEec--CCCEEEEEECCCeEEEEECCCCeeEEEEec-CCCCeEEEEEecCCCEEEEEECCCeEEEE
Q psy2685 87 FTLL-GHLDYIRTTFFHH--EYPWILSASDDQTIRIWNWQSRNCICVLTG-HNHYVMCAQFHPTDDIVVSASLDQTIRVW 162 (992)
Q Consensus 87 ~~l~-~h~~~V~~i~fsp--d~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~-h~~~V~sl~fspdg~~L~sgs~Dg~I~iw 162 (992)
..+. +|.++|.+++|+| ++.++++|+.||+|++||++++++...... |...|.+++|+|++.++++|+.||+|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4443 7778999999999 999999999999999999999998777644 55689999999999999999999999999
Q ss_pred ECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 163 DISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG-HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 163 d~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~-h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
|+++... ....+.+ |.++|++++|+|++.+|++++. +.|++||+++++....+
T Consensus 198 d~~~~~~-------------------------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 198 NLSSPDQ-------------------------ASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp ESSCTTS-------------------------CCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSS
T ss_pred ECCCCCC-------------------------CccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceee
Confidence 9986532 1134556 9999999999999999999995 59999999998765443
Q ss_pred ec---cCc------cc---ccCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCEEEEEEeC---CCCEEEEEECCCEEE
Q psy2685 242 RR---EQE------RF---WSEVIVSNAE-DKSIRLWDMTKRTCLNTFRREQERFWVLVAHP---TLNLFAAGHDAGMVV 305 (992)
Q Consensus 242 ~~---~~~------~~---~s~~l~sgs~-Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~sp---dg~~Lasgsddgiiv 305 (992)
.. +.. .. .+.++++++. |+.+++|++.+....... .++..+.|+| +...+++++.++.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceE
Confidence 32 111 11 2478999888 999999998765433222 4677888998 888888887776553
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.4e-25 Score=254.94 Aligned_cols=332 Identities=9% Similarity=0.095 Sum_probs=247.5
Q ss_pred CCCCEEEEE---EcCCCCEEEEEEc--------------CC--eEEEEEcCCC--eEEEEeccCCCCEEEEEEecCCCEE
Q psy2685 8 KSARVKGLS---FHPKRPWILSSLH--------------NG--VIQLWDYRMN--TLLEKFDEHEGPVRGICFHNQQPIF 66 (992)
Q Consensus 8 H~~~V~~ia---fspdg~~Lasg~~--------------dg--~I~IWd~~~g--~~~~~~~~h~~~V~~l~fspdg~~L 66 (992)
....+..++ |+|++..+++.+. ++ .|..||..++ +.+..+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345678888 9998877765432 22 4444554445 566666544 446699999977778
Q ss_pred EEEECCCeEEEEEcCCCeEEE-----EEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEE
Q psy2685 67 VSGGDDYKIKVWNYKQRKCIF-----TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCA 141 (992)
Q Consensus 67 asgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl 141 (992)
++++.++.|.+||..+++... .+.+|.+.|.+++|+|++.++++++.|+.|++||+++++.+..+..|...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 888889999999999998876 345788899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEE-ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEE
Q psy2685 142 QFHPTDDIVVSA-SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVS 220 (992)
Q Consensus 142 ~fspdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s 220 (992)
+|+|+++.++++ +.|+.|++||+++.+ ....+.. ...+.+++|+|+++.+++
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~--------------------------~~~~~~~-~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKL--------------------------EIRKTDK-IGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTE--------------------------EEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCc--------------------------EEEEecC-CCCceEEEEcCCCCEEEE
Confidence 999999887554 478999999987532 2233333 345899999999999998
Q ss_pred Ee--------CCCeEEEEECCCCeeeeEeeccCc---ccc---c-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEE
Q psy2685 221 NA--------EDKSIRLWDMTKRTCLNTFRREQE---RFW---S-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285 (992)
Q Consensus 221 ~s--------~Dg~I~vwdl~~~~~l~~~~~~~~---~~~---s-~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~ 285 (992)
++ .|+.|++||+.+++.+..+..... ..+ + .++++++.++.|++||+.+++.+..+. +...+.+
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~ 349 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNT 349 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCe
Confidence 88 588999999999887766532221 112 2 356777999999999999999888775 5678999
Q ss_pred EEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCE
Q psy2685 286 LVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHS 365 (992)
Q Consensus 286 la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~ 365 (992)
++|+|+++++++++.+.-.+ .....+ ....++.+++||+.+++..... .. ...+..++|+|+|++
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~----~~~~~~-------~g~~dg~v~~~d~~~~~~~~~~--~~--~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHP----TEGYLK-------KGLVLGKVYVIDTTTDTVKEFW--EA--GNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEECTTSSEEEEEECCCCCT----TTCTTS-------CCSSCCEEEEEETTTTEEEEEE--EC--SSSEEEEEECTTSCE
T ss_pred EEEcCCCCEEEEEecCCCcc----cccccc-------ccccceEEEEEECCCCcEEEEe--cC--CCCCceEEEcCCCCE
Confidence 99999999888876532100 000000 0013457788888766543333 21 346899999999999
Q ss_pred EEEEecCCccccCCeEEEEEeCC
Q psy2685 366 ILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 366 lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
+++++. .++.+.+|++..
T Consensus 415 l~~~~~-----~d~~i~v~~~~~ 432 (433)
T 3bws_A 415 LVISDF-----LDHQIRVYRRDG 432 (433)
T ss_dssp EEEEET-----TTTEEEEEEETT
T ss_pred EEEEEC-----CCCeEEEEEecC
Confidence 998874 258999998763
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-27 Score=277.78 Aligned_cols=246 Identities=11% Similarity=0.192 Sum_probs=200.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCC-----CEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEG-----PVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~-----~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
+|+..|.+++|||+|.+||+++.||.|++||.+. ++..+. |.. .|.+++|||+|++|++|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5678899999999999999999999999999543 777777 765 49999999999999999999999999999
Q ss_pred CCe-------EEEEE----ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCee---EEEE-ecCCCCeEEEEEecC
Q psy2685 82 QRK-------CIFTL----LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC---ICVL-TGHNHYVMCAQFHPT 146 (992)
Q Consensus 82 t~~-------~~~~l----~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~---i~~l-~~h~~~V~sl~fspd 146 (992)
++. .+.++ .+|.+.|.+++|+|+| +++++.|++|++||+.++.. ..++ .+|...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 875 35666 6788899999999999 88999999999999988773 3566 4788999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEE--cCCCCEEEEEeCC
Q psy2685 147 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLF--HPKSEVIVSNAED 224 (992)
Q Consensus 147 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~f--spdg~~L~s~s~D 224 (992)
++.+++++ +++|++||+.+.. ......+|...|..+.| +|++..++++++|
T Consensus 236 g~~LASa~-~~tIkLWd~~~~~--------------------------~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 236 DYKVVLTC-PGYVHKIDLKNYS--------------------------ISSLKTGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp TTEEEEEC-SSEEEEEETTTTE--------------------------EEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred CCEEEEEe-CCeEEEEECCCCe--------------------------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 68899887 6999999987632 21223389999999999 9999999999999
Q ss_pred CeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q psy2685 225 KSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHD 300 (992)
Q Consensus 225 g~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsd 300 (992)
|+ ++|.... +. +..... . +++.|+++++|+...+. ...+.+ ...|.+++|||||+.+|+++.
T Consensus 289 G~-klw~~d~---~~-~spd~~-----l--~a~~d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 289 SY-KVLLEDE---LH-VTADNI-----I--APYLEKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EE-EEEESSS---EE-EECCCS-----S--HHHHHHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CC-EEEeecc---EE-ECCCce-----E--EEEcCCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 99 9999872 11 222111 1 12238899999876544 333333 556999999999999999874
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.7e-25 Score=259.05 Aligned_cols=286 Identities=12% Similarity=0.150 Sum_probs=217.4
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe---EEEEEcc-------------------------------------
Q psy2685 52 GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK---CIFTLLG------------------------------------- 91 (992)
Q Consensus 52 ~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~------------------------------------- 91 (992)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999966655 57899999999988 5555543
Q ss_pred -----------------CCCCEEEEEEecCCCEE-EEEECCCeEEEEECC--CCeeEEEEe--cCCCCeEEEEEecCCCE
Q psy2685 92 -----------------HLDYIRTTFFHHEYPWI-LSASDDQTIRIWNWQ--SRNCICVLT--GHNHYVMCAQFHPTDDI 149 (992)
Q Consensus 92 -----------------h~~~V~~i~fspd~~~L-~sgs~Dg~I~vwdl~--t~~~i~~l~--~h~~~V~sl~fspdg~~ 149 (992)
|.+.|++++|+|++++| ++|+.||.|++||+. +++++..+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999999996 889999999999999 888888876 56789999999999999
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC---CCEEEEEeCCCe
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK---SEVIVSNAEDKS 226 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd---g~~L~s~s~Dg~ 226 (992)
|++|+.||.|++|++.+..... .....+.+|.+.|.+++|+|+ +++|++++.|++
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~----------------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEK----------------------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH 221 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSS----------------------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEeCCCcEEEEecCCccccc----------------------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence 9999999999999987643211 012245679999999999999 999999999999
Q ss_pred EEEEECCCCeeeeE-eeccCccc------ccCEEEEEeCCCeEEEEECCCCeEEEEeec---------------------
Q psy2685 227 IRLWDMTKRTCLNT-FRREQERF------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRR--------------------- 278 (992)
Q Consensus 227 I~vwdl~~~~~l~~-~~~~~~~~------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~--------------------- 278 (992)
|++||+.++..+.. +..|...+ .+.++++++.|+.|++||+.+++++..+..
T Consensus 222 i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 222 IKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp EEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred EEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence 99999999887776 43555433 247999999999999999999998888763
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEE-CCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEe--eCC-CceEEEEeecCC
Q psy2685 279 ----EQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDL--TNS-KDSVVMQLRGGG 350 (992)
Q Consensus 279 ----h~~~V~~la~spdg~~Lasgs-ddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl--~~~-~~~~v~~l~~~~ 350 (992)
....+.+++|+|++++|++++ .++ .+++|++ .++ ....+..+. .+
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~--------------------------~i~iw~~~~~~~~~l~~~~~~~-~~ 354 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATK--------------------------CIIILEMSEKQKGDLALKQIIT-FP 354 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCS--------------------------EEEEEEECSSSTTCEEEEEEEE-CS
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCC--------------------------eEEEEEeccCCCCceeeccEec-cC
Confidence 235689999999999999887 443 3344665 222 112333333 33
Q ss_pred CccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 351 RIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 351 ~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
..|.+++|+|++.++++.+.......+..+++|.+..
T Consensus 355 -~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 355 -YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp -SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred -CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 6889999999654333333221112345677777654
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.1e-25 Score=253.95 Aligned_cols=275 Identities=11% Similarity=0.106 Sum_probs=221.9
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEE-----EeccCCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q psy2685 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLE-----KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79 (992)
Q Consensus 5 l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~-----~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd 79 (992)
+..+ ..+.+++|+|++.++++++.++.|++||..+++... .+..|.+.|.+++|+|++..+++++.|+.|++||
T Consensus 119 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 119 FKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp EECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred EcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 3334 446699999977777788888999999999998887 3457888999999999999999999999999999
Q ss_pred cCCCeEEEEEccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE----
Q psy2685 80 YKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS-DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS---- 154 (992)
Q Consensus 80 ~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs-~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs---- 154 (992)
+.+++....+..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..+ ..+.+++|+|+++.+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 198 LKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp TTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred CCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence 999999999999999999999999999886554 7999999999999988877754 5599999999999999888
Q ss_pred ----CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEE
Q psy2685 155 ----LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV-IVSNAEDKSIRL 229 (992)
Q Consensus 155 ----~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~-L~s~s~Dg~I~v 229 (992)
.||.|++||+.+.+ ......|...+.+++|+|+++. +++++.|+.|++
T Consensus 277 ~~~~~dg~i~~~d~~~~~---------------------------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEK---------------------------LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp TTCSCCEEEEEEETTTTE---------------------------EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred ccccCCCeEEEEECCCCc---------------------------EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 47788888876432 1122245567889999999974 566789999999
Q ss_pred EECCCCeeeeEeeccCccc---c---cCEEEEEeC---------------CCeEEEEECCCCeEEEEeecCCCCEEEEEE
Q psy2685 230 WDMTKRTCLNTFRREQERF---W---SEVIVSNAE---------------DKSIRLWDMTKRTCLNTFRREQERFWVLVA 288 (992)
Q Consensus 230 wdl~~~~~l~~~~~~~~~~---~---s~~l~sgs~---------------Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~ 288 (992)
||+.+++.+..+....... + +..+++++. ||.|++||..+++.+..+.. ...+.+++|
T Consensus 330 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~ 408 (433)
T 3bws_A 330 YDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDV 408 (433)
T ss_dssp EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEE
T ss_pred EECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEE
Confidence 9999998887776433221 1 356666665 57999999999999888876 457899999
Q ss_pred eCCCCEEEEEE--CCCEEEEEec
Q psy2685 289 HPTLNLFAAGH--DAGMVVFKFE 309 (992)
Q Consensus 289 spdg~~Lasgs--ddgiivw~l~ 309 (992)
+|+|++|++++ ++.+.+|++.
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCCCEEEEEECCCCeEEEEEec
Confidence 99999988765 3345566653
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=2.5e-25 Score=259.13 Aligned_cols=300 Identities=19% Similarity=0.340 Sum_probs=224.8
Q ss_pred CEEEEEEcCCC----------CEEEEEEc----CCeEEEEEcC--------------------------CCeE-EEEecc
Q psy2685 11 RVKGLSFHPKR----------PWILSSLH----NGVIQLWDYR--------------------------MNTL-LEKFDE 49 (992)
Q Consensus 11 ~V~~iafspdg----------~~Lasg~~----dg~I~IWd~~--------------------------~g~~-~~~~~~ 49 (992)
+..++.|.|+. .++++|+. ...|.++++. +++. ......
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 56889999975 46778765 3457777532 1112 234456
Q ss_pred CCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCC----------CeEEEEEccCCCCEEEEEEecCCC-EEEEEECCCeE
Q psy2685 50 HEGPVRGICFHNQ-QPIFVSGGDDYKIKVWNYKQ----------RKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTI 117 (992)
Q Consensus 50 h~~~V~~l~fspd-g~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~V~~i~fspd~~-~L~sgs~Dg~I 117 (992)
|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+.+|...|.+++|+|+++ +|++|+.||.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 9999999999997 67999999999999999986 577788899999999999999998 99999999999
Q ss_pred EEEECCCCee-------EEEEecCCCCeEEEEEec-CCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEcc
Q psy2685 118 RIWNWQSRNC-------ICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN 189 (992)
Q Consensus 118 ~vwdl~t~~~-------i~~l~~h~~~V~sl~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~ 189 (992)
++||+.++.. ...+.+|...|.+++|+| ++..|++++.||.|++||++.....
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~------------------- 267 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS------------------- 267 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-------------------
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-------------------
Confidence 9999987322 456778999999999999 6789999999999999999864210
Q ss_pred CCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECC
Q psy2685 190 DSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMT 268 (992)
Q Consensus 190 ~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~ 268 (992)
.....+..|...|.+++|+|++. ++++|+.||.|++||+++.
T Consensus 268 ----~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~--------------------------------- 310 (430)
T 2xyi_A 268 ----KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------------------- 310 (430)
T ss_dssp ----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT---------------------------------
T ss_pred ----cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC---------------------------------
Confidence 13345568999999999999987 7889999999999987642
Q ss_pred CCeEEEEeecCCCCEEEEEEeCCCC-EEEEEECCC-EEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEe
Q psy2685 269 KRTCLNTFRREQERFWVLVAHPTLN-LFAAGHDAG-MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQL 346 (992)
Q Consensus 269 t~~~v~~l~~h~~~V~~la~spdg~-~Lasgsddg-iivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l 346 (992)
..++..+..|...|++++|+|++. +|++|+.++ +.+|++.......... +...+....+...
T Consensus 311 -~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~ 374 (430)
T 2xyi_A 311 -KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE---------------DAEDGPPELLFIH 374 (430)
T ss_dssp -TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH---------------HHHHCCTTEEEEC
T ss_pred -CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc---------------ccccCCcceEEEc
Confidence 123556667888999999999985 677776554 4566554321100000 0000111222322
Q ss_pred ecCCCccceeEEEccCCC-EEEEEecCCccccCCeEEEEEeCCC
Q psy2685 347 RGGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 347 ~~~~~~~I~~lafspdg~-~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
.+|...|..++|+|++. .+++++.+ |.+++|.+...
T Consensus 375 -~~h~~~v~~~~~~p~~~~~l~s~s~d------g~i~iw~~~~~ 411 (430)
T 2xyi_A 375 -GGHTAKISDFSWNPNEPWIICSVSED------NIMQVWQMAEN 411 (430)
T ss_dssp -CCCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECHH
T ss_pred -CCCCCCceEEEECCCCCCEEEEEECC------CCEEEeEcccc
Confidence 35778899999999999 77777654 99999998754
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1e-23 Score=240.68 Aligned_cols=261 Identities=10% Similarity=0.050 Sum_probs=209.7
Q ss_pred CEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEE-EEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEE
Q psy2685 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIF-VSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTF 100 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~ 100 (992)
..+++++.|+.|++||..+++.+..+..|. .+.+++|+|+++.+ ++++.|+.|++||..+++....+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788889999999999999999888665 58999999999977 567789999999999999988887655 899999
Q ss_pred EecCCCEEEEEE-CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEE-EEEECCCeEEEEECCCCccccccCCccc
Q psy2685 101 FHHEYPWILSAS-DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIV-VSASLDQTIRVWDISGLRKKNVAPGMGA 178 (992)
Q Consensus 101 fspd~~~L~sgs-~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 178 (992)
|+|+++++++++ .++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+.+.+
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---------- 149 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---------- 149 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----------
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc----------
Confidence 999999876554 6799999999999988888754 568999999999877 677889999999987532
Q ss_pred CCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeeEeeccCccc------ccC
Q psy2685 179 DDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTKRTCLNTFRREQERF------WSE 251 (992)
Q Consensus 179 ~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~------~s~ 251 (992)
....+..+ ..+.++.|+|+++.+ ++++.|+.|++||+.+++....+..+.... .+.
T Consensus 150 ----------------~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 150 ----------------VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT 212 (391)
T ss_dssp ----------------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred ----------------EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence 23334433 457899999999877 677889999999999998887776543221 136
Q ss_pred EEEEEe---CCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEE-EEEECCC-EEEEEecCCcc
Q psy2685 252 VIVSNA---EDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLF-AAGHDAG-MVVFKFERERP 313 (992)
Q Consensus 252 ~l~sgs---~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~L-asgsddg-iivw~l~~~~~ 313 (992)
.+++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++ +.+|++.+.+.
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 677776 78999999999999988887654 57899999999977 5555444 55677665443
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=281.02 Aligned_cols=258 Identities=16% Similarity=0.175 Sum_probs=206.7
Q ss_pred EEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC--CCeEEEEEccCCCCEEEEEEecC--CCEEEEEECCCeEEE
Q psy2685 44 LEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK--QRKCIFTLLGHLDYIRTTFFHHE--YPWILSASDDQTIRI 119 (992)
Q Consensus 44 ~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~i~fspd--~~~L~sgs~Dg~I~v 119 (992)
+..+.+|.++|++++|+|++++|++|+.||.|++||+. +++....+.+|.++|++++|+|+ +.++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34577899999999999999999999999999999998 55777889999999999999988 899999999999999
Q ss_pred EECCCCe--eEEEEecCCCCeEEEEEecC--CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceE
Q psy2685 120 WNWQSRN--CICVLTGHNHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE 195 (992)
Q Consensus 120 wdl~t~~--~i~~l~~h~~~V~sl~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~ 195 (992)
||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||+|++||+++... ..
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------------------------~~ 137 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------------------TS 137 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------------------------CC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------------------------cc
Confidence 9999987 77888899999999999999 99999999999999999976422 12
Q ss_pred EEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeE
Q psy2685 196 VDIFRGHYNNVSCVLFHP-------------KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSI 262 (992)
Q Consensus 196 i~~l~~h~~~V~~v~fsp-------------dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I 262 (992)
...+.+|...|.++.|+| ++.++++|+.||+|++||+.++..
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~------------------------- 192 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------------------- 192 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-------------------------
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-------------------------
Confidence 345678999999999999 477788888888888887654321
Q ss_pred EEEECCCCeEEEEeecCCCCEEEEEEeCC---CCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCC
Q psy2685 263 RLWDMTKRTCLNTFRREQERFWVLVAHPT---LNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSK 339 (992)
Q Consensus 263 ~vwd~~t~~~v~~l~~h~~~V~~la~spd---g~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~ 339 (992)
.......+.+|...|++++|+|+ +.++++|+.+|.+ ++||+.++.
T Consensus 193 ------~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I--------------------------~iwd~~~~~ 240 (753)
T 3jro_A 193 ------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC--------------------------IIWTQDNEQ 240 (753)
T ss_dssp ------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE--------------------------EEEEESSSS
T ss_pred ------cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE--------------------------EEecCCCCC
Confidence 11445677789999999999999 8999999876643 335554432
Q ss_pred ceEEEEe--ecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 340 DSVVMQL--RGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 340 ~~~v~~l--~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
....... ...+...|++++|+|+|.++++++.+ |.+++|++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D------g~I~vwd~~~ 285 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS------SCEECCBCCS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC------CEEEEEecCC
Confidence 2111111 12467889999999999999988765 8999999874
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.7e-23 Score=238.81 Aligned_cols=321 Identities=12% Similarity=0.114 Sum_probs=236.2
Q ss_pred EEeecCCCCEEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEc
Q psy2685 3 TKFETKSARVKGLSFHPKRPWI-LSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNY 80 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~L-asg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~ 80 (992)
..+..|. .+.+++|+|+++++ ++++.++.|++||..+++.+..+..+. .+.+++|+|+++++++++ .++.|.+||+
T Consensus 26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence 4566664 58999999999987 566689999999999999998887555 899999999999876554 6799999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEecCCCEE-EEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEE-EEEECCCe
Q psy2685 81 KQRKCIFTLLGHLDYIRTTFFHHEYPWI-LSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIV-VSASLDQT 158 (992)
Q Consensus 81 ~t~~~~~~l~~h~~~V~~i~fspd~~~L-~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~Dg~ 158 (992)
.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.++.
T Consensus 104 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 104 TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCE
Confidence 999988887654 568999999999977 67888999999999999998888865 457999999999877 56778899
Q ss_pred EEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q psy2685 159 IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA---EDKSIRLWDMTKR 235 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s---~Dg~I~vwdl~~~ 235 (992)
|++||+++.. ....+ .+...+.+++|+|+++++++++ .++.|++||+.++
T Consensus 182 v~~~d~~~~~--------------------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 182 ISVIDTVTNS--------------------------VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEETTTTE--------------------------EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEECCCCe--------------------------EEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 9999987632 22222 3456789999999999998888 6899999999999
Q ss_pred eeeeEeeccCccc---c---cCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCEE---EEEEeCCCCEEEEEECCCEEE
Q psy2685 236 TCLNTFRREQERF---W---SEVI-VSNAEDKSIRLWDMTKRTCLNTFRREQERFW---VLVAHPTLNLFAAGHDAGMVV 305 (992)
Q Consensus 236 ~~l~~~~~~~~~~---~---s~~l-~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~---~la~spdg~~Lasgsddgiiv 305 (992)
+.+..+..+.... + +..+ ++++.|+.|++||+.+++.+..+..+..+.. .+.+.|++..+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------ 308 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSAD------ 308 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCC------
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccc------
Confidence 9888887655432 1 2455 6778899999999999999998877655432 245555544331100
Q ss_pred EEecCCcceEEeecc-EEE--EEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEe
Q psy2685 306 FKFERERPAYTVHNN-VMY--YVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTT 370 (992)
Q Consensus 306 w~l~~~~~~~~~~~~-~v~--~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~ 370 (992)
|...... .+..... ..+ ...+...++|++..+... .+.. ....|+|+|.+.+...
T Consensus 309 fs~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-------~~~~--~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 309 FKSNITS-GYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-------KKQN--PTHTYSETGIYTVRLT 366 (391)
T ss_dssp EEESCCS-SEEETTCCEEEEECCBSCSEEEEECSSSCEE-------CSSS--CEECCSSCEEEEEEEE
T ss_pred ccccccc-ccccccceEEEEeCCCCceEEEEECCCCccc-------CcCC--CeEEeCCCceEEEEEE
Confidence 0100000 0000000 011 113567889999665421 1122 3467999999887655
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=5.2e-23 Score=246.81 Aligned_cols=328 Identities=12% Similarity=0.093 Sum_probs=250.8
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEc--CCCeEEEEEccCC
Q psy2685 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNY--KQRKCIFTLLGHL 93 (992)
Q Consensus 16 afspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~--~t~~~~~~l~~h~ 93 (992)
+|+|++..+++++.+++|.+||..+++.+.++..+.. +.+++|+|+|+++++++.|+.|.+||+ .+++.+.++. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899998899999999999999999999999984433 899999999999999999999999999 8899888887 45
Q ss_pred CCEEEEEEec----CCCEEEEEE-CCCeEEEEECCCCeeEEEEecC-----------CCCeEEEEEecCCC-EEEEEECC
Q psy2685 94 DYIRTTFFHH----EYPWILSAS-DDQTIRIWNWQSRNCICVLTGH-----------NHYVMCAQFHPTDD-IVVSASLD 156 (992)
Q Consensus 94 ~~V~~i~fsp----d~~~L~sgs-~Dg~I~vwdl~t~~~i~~l~~h-----------~~~V~sl~fspdg~-~L~sgs~D 156 (992)
..++.++|+| +++++++++ .+++|.+||..+++++.++..+ ...+.++.++|+++ ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5689999999 999999888 4899999999999999888752 23788999999875 45666678
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN-AEDKSIRLWDMTKR 235 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~vwdl~~~ 235 (992)
++|.+||...... ..+..+ .+...+.++.|+|+|++++++ ..+++|.+||..++
T Consensus 302 g~i~vvd~~~~~~------------------------l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 302 GKVLLVNYKDIDN------------------------LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp TEEEEEECTTSSS------------------------CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CeEEEEEecCCCc------------------------ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence 8899998865321 111222 245567789999999977655 46899999999999
Q ss_pred eeeeEeec----cCcc---c----ccCEEEEEe-CCCeEEEEECCC-------CeEEEEeecCCCCEEEEEEeCCCCEEE
Q psy2685 236 TCLNTFRR----EQER---F----WSEVIVSNA-EDKSIRLWDMTK-------RTCLNTFRREQERFWVLVAHPTLNLFA 296 (992)
Q Consensus 236 ~~l~~~~~----~~~~---~----~s~~l~sgs-~Dg~I~vwd~~t-------~~~v~~l~~h~~~V~~la~spdg~~La 296 (992)
+++..+.. |... + .+..++++. .|++|.+||+.+ ++++.++..+...+..+.+||+++.|.
T Consensus 357 ~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~ 436 (543)
T 1nir_A 357 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 436 (543)
T ss_dssp EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence 99888774 2211 1 135666765 689999999998 899999999988889999999999999
Q ss_pred EEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCce-EEEEee-----cCCCccceeEEEccCCCEEEEEe
Q psy2685 297 AGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDS-VVMQLR-----GGGRIPAHSISYNATEHSILVTT 370 (992)
Q Consensus 297 sgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~-~v~~l~-----~~~~~~I~~lafspdg~~lav~~ 370 (992)
+++.-+- +. -.+++|.+||+.+.+.. ..+.+. ..+...+..+.|+|+|+.+.++.
T Consensus 437 v~~~~~~-------~~------------~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 437 VDTTFNP-------DA------------RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp ECCTTCS-------SH------------HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred EecCCCC-------Cc------------ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 8752000 00 01345666777766644 332221 13456789999999999999875
Q ss_pred cCCccccCCeEEEEEeCCCc
Q psy2685 371 RNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 371 ~~~~~~~~g~i~i~~l~~~~ 390 (992)
.+ .-..++.+.+|+.....
T Consensus 498 ~~-~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 498 WN-GKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EC-CTTSCCEEEEEETTTTE
T ss_pred ec-CCCCCCeEEEEECCCce
Confidence 32 01246889998876543
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.4e-24 Score=249.86 Aligned_cols=215 Identities=13% Similarity=0.145 Sum_probs=172.0
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCeEEE-----EeccCCCCEEEEEEec--------CCCEEEEEECCCeEEEEEcC
Q psy2685 15 LSFHPKRPWILSSLHNGVIQLWDYRMNTLLE-----KFDEHEGPVRGICFHN--------QQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 15 iafspdg~~Lasg~~dg~I~IWd~~~g~~~~-----~~~~h~~~V~~l~fsp--------dg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+++++.+|++|+.|++|+|||.++++... .+.+|.+.|.+++|+| ++++|++|+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 3344556689999999999999998886543 3578999999999998 78899999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCC-EEEEEECCCeEEEEECCCCeeEEE-------------------------EecCC
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWNWQSRNCICV-------------------------LTGHN 135 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~-~L~sgs~Dg~I~vwdl~t~~~i~~-------------------------l~~h~ 135 (992)
++.....+.+|..+|.+++|+|++. +|++|+.|++|++||+++++.... ..+|.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 9998888889999999999999875 799999999999999988754332 23577
Q ss_pred CCeEEEEEe-cCCCEEEEEECCCeEEEEECCCCccccccC--------------------------------------Cc
Q psy2685 136 HYVMCAQFH-PTDDIVVSASLDQTIRVWDISGLRKKNVAP--------------------------------------GM 176 (992)
Q Consensus 136 ~~V~sl~fs-pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~--------------------------------------~~ 176 (992)
..+.++.|+ |++..+++++.|+++++||+.......... .+
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 888999987 799999999999999999986543221110 04
Q ss_pred ccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy2685 177 GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232 (992)
Q Consensus 177 ~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl 232 (992)
++.|+.|++||..++.. .....+|..+|.+++|+|||++|++++.|| +.+|.+
T Consensus 335 gs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 67799999999998764 455678889999999999999999998876 555543
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.1e-23 Score=232.75 Aligned_cols=267 Identities=12% Similarity=0.175 Sum_probs=185.8
Q ss_pred EEEEEEcCCCC---EEEEEEcCCeEEEEEcCCC---eEEEEeccCCCCEEEEEEecCCC-EEEEEECCCeE-EEEEc--C
Q psy2685 12 VKGLSFHPKRP---WILSSLHNGVIQLWDYRMN---TLLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKI-KVWNY--K 81 (992)
Q Consensus 12 V~~iafspdg~---~Lasg~~dg~I~IWd~~~g---~~~~~~~~h~~~V~~l~fspdg~-~Lasgs~Dg~I-~VWd~--~ 81 (992)
+.++-|-..+- .+++++ ...|++|+..++ +.+.++..|..+|..+.+.||-. +++++-.+=.+ .++-+ .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 56666755433 566666 678999999988 88999999999998888888543 33333222111 11111 1
Q ss_pred CC----eEEEEEccCCCCEEEEEEecCCCEEEEEE--CCCeEEEEECC-CCeeEEEEecCCCCeEEEEEec---CCCEEE
Q psy2685 82 QR----KCIFTLLGHLDYIRTTFFHHEYPWILSAS--DDQTIRIWNWQ-SRNCICVLTGHNHYVMCAQFHP---TDDIVV 151 (992)
Q Consensus 82 t~----~~~~~l~~h~~~V~~i~fspd~~~L~sgs--~Dg~I~vwdl~-t~~~i~~l~~h~~~V~sl~fsp---dg~~L~ 151 (992)
.. .......+|...|..+ ++++++.+++ .|+.|++|++. +++.+..+.+|...++.++|+| ++..|+
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 11 1111112344334433 4555555533 58999999994 4888888889999999999999 779999
Q ss_pred EEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC---CCeEEEEEcCCCCEE----------
Q psy2685 152 SASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY---NNVSCVLFHPKSEVI---------- 218 (992)
Q Consensus 152 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~---~~V~~v~fspdg~~L---------- 218 (992)
+|+.|++|++||+.+++ .+.++.+|. ..+.+++|+|+|.++
T Consensus 198 SgS~D~TIkIWDl~TGk--------------------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQ--------------------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp EEETTSEEEEEETTTCC--------------------------EEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred EecCCCcEEEEECCCCc--------------------------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 99999999999998653 445555543 467888999999876
Q ss_pred --EEEeCCCeEEEEECCCCeeeeEee-----ccCcccc-----cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEE-E
Q psy2685 219 --VSNAEDKSIRLWDMTKRTCLNTFR-----REQERFW-----SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW-V 285 (992)
Q Consensus 219 --~s~s~Dg~I~vwdl~~~~~l~~~~-----~~~~~~~-----s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~-~ 285 (992)
++|+.|++|++||..+++.+..+. ++...+. +..+++++.|++|++||+.+++++.++.+|.+.+. +
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 568889999999999998876652 3332222 24789999999999999999999999998887655 5
Q ss_pred EEEeCCCCEEEEEECCCE-EEEEe
Q psy2685 286 LVAHPTLNLFAAGHDAGM-VVFKF 308 (992)
Q Consensus 286 la~spdg~~Lasgsddgi-ivw~l 308 (992)
++|||||++|++|+.|+. .+|++
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 899999999999997764 45653
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=4.5e-23 Score=233.84 Aligned_cols=308 Identities=10% Similarity=0.142 Sum_probs=202.8
Q ss_pred EEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEE-EEEEC
Q psy2685 35 LWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWI-LSASD 113 (992)
Q Consensus 35 IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L-~sgs~ 113 (992)
+|++.+.+.+...+.|.+.|.+++|+|+|++|++|+.+| +++||..+++....... ..+..+.+.++++.+ ++|+.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566777777777888999999999999999999988775 78999988877655432 347788899988877 56778
Q ss_pred CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCC-ccccccCCcccCCCeEEEEEccCCc
Q psy2685 114 DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGL-RKKNVAPGMGADDRQIKLWRMNDSK 192 (992)
Q Consensus 114 Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~~d~~I~iwd~~~~~ 192 (992)
|++|++||..+++++..+. |...|.++.|+++. ++++ .|+.|++||+.+. +...
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~--------------------- 134 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT--------------------- 134 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS---------------------
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE---------------------
Confidence 8999999999999999887 67799999999764 4444 4788999998764 2111
Q ss_pred ceEEEEEeccCCCeEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCC
Q psy2685 193 AWEVDIFRGHYNNVSCVLFHPKSEVIVS--NAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKR 270 (992)
Q Consensus 193 ~~~i~~l~~h~~~V~~v~fspdg~~L~s--~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~ 270 (992)
.+.. +...++++| .++++ |+.||.|++||+.++.......... +....
T Consensus 135 -----~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~--------------------~~~~~ 184 (355)
T 3vu4_A 135 -----DDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV--------------------QQKAI 184 (355)
T ss_dssp -----CCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------------------------
T ss_pred -----Eecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------------------ccccc
Confidence 0111 233455666 55655 5789999999988754321110000 00111
Q ss_pred eE-EEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecC
Q psy2685 271 TC-LNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGG 349 (992)
Q Consensus 271 ~~-v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~ 349 (992)
.+ +..+.+|.+.|++++|+|+|++|++|+.|+.+ +++||+.+++ .+..+..+
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~-------------------------v~iwd~~~~~--~~~~~~~g 237 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI-------------------------IRVFKTEDGV--LVREFRRG 237 (355)
T ss_dssp --CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE-------------------------EEEEETTTCC--EEEEEECT
T ss_pred CcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE-------------------------EEEEECCCCc--EEEEEEcC
Confidence 23 56788999999999999999999999887630 3446665554 33445434
Q ss_pred -CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceecc---------------------CccccceEE
Q psy2685 350 -GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVAD---------------------GKRSTGISA 407 (992)
Q Consensus 350 -~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~---------------------~~~~~~~s~ 407 (992)
|...|.+++|+|+|+++++++.+ +++++|++............ ........+
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETT------CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECC------CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 78899999999999999999875 99999999765332111110 011122457
Q ss_pred EEecCCeEE-EEEcCCeEEEEEcCCcc
Q psy2685 408 VWVARNRFA-VLDRNHTILIKNLKNEY 433 (992)
Q Consensus 408 ~w~~~~~~a-v~~~~g~I~i~dl~~~~ 433 (992)
.|++++.++ +...+|.+.+|++.+.+
T Consensus 312 a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 312 AWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 899887555 45559999999886543
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=6.5e-24 Score=234.45 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=156.1
Q ss_pred CCEEEEEEcCC----CCEEEEEEc--------------------CCeEEEEEc-CCCeEEEEeccCCCCEEEEEEec---
Q psy2685 10 ARVKGLSFHPK----RPWILSSLH--------------------NGVIQLWDY-RMNTLLEKFDEHEGPVRGICFHN--- 61 (992)
Q Consensus 10 ~~V~~iafspd----g~~Lasg~~--------------------dg~I~IWd~-~~g~~~~~~~~h~~~V~~l~fsp--- 61 (992)
..|.+++|+|| +++++++++ |+.|++|++ .+|+.+..+..|...++.++|+|
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 36778888888 888887664 788888888 45777777778888888888888
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEEccCC---CCEEEEEEecCCCEE------------EEEECCCeEEEEECCCCe
Q psy2685 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHL---DYIRTTFFHHEYPWI------------LSASDDQTIRIWNWQSRN 126 (992)
Q Consensus 62 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~---~~V~~i~fspd~~~L------------~sgs~Dg~I~vwdl~t~~ 126 (992)
++..|++|+.|++|+|||+++|+++.++.+|. ..+.+++|+|++.++ ++|+.|++|++||..+++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 67899999999999999999999999998754 367788999999876 568899999999999999
Q ss_pred eEEEE-----ecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEec
Q psy2685 127 CICVL-----TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG 201 (992)
Q Consensus 127 ~i~~l-----~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~ 201 (992)
.+.++ .+|...+.+..++ +..+++++.|++|++||+.+++ .+.++.+
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk--------------------------~l~tL~g 323 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ--------------------------CTALLPP 323 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS--------------------------EEEEECC
T ss_pred EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc--------------------------EEEEecC
Confidence 88776 3676665555554 7899999999999999997653 5677888
Q ss_pred cCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEC
Q psy2685 202 HYNNVS-CVLFHPKSEVIVSNAEDKSIRLWDM 232 (992)
Q Consensus 202 h~~~V~-~v~fspdg~~L~s~s~Dg~I~vwdl 232 (992)
|...+. +++|+|||++|++|+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 887655 6899999999999999999999985
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=237.05 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=177.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcC---------CCeEEEEec-cCCCCEEEEEEec--CCCEEEEEECCCeEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYR---------MNTLLEKFD-EHEGPVRGICFHN--QQPIFVSGGDDYKIKV 77 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~---------~g~~~~~~~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~V 77 (992)
..|.++.|+|+ +++++.|++|++|+.. +++.+..+. .|.++|.+++|+| +++++++|+.||+|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 56777888988 9999999999999654 555455554 6778999999999 9999999999999999
Q ss_pred EEcCCCeEEEEEc-cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE-EEEec-CCCCeEEEEEecCCCEEEEEE
Q psy2685 78 WNYKQRKCIFTLL-GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI-CVLTG-HNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 78 Wd~~t~~~~~~l~-~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i-~~l~~-h~~~V~sl~fspdg~~L~sgs 154 (992)
||+++++...... .|...+.+++|+|++.++++|+.||.|++||+++++.+ ..+.+ |..+|++++|+|++.+|++++
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 9999999877664 45568999999999999999999999999999999887 78888 999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCe--EEEEEcCCCCEEEEEeC-CCeEEEEE
Q psy2685 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNV--SCVLFHPKSEVIVSNAE-DKSIRLWD 231 (992)
Q Consensus 155 ~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V--~~v~fspdg~~L~s~s~-Dg~I~vwd 231 (992)
. ++|++||++........ ..+..|...+ .+++|+|+|++|++++. |+.+++|+
T Consensus 234 ~-~~v~iwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 234 D-QTVVCFDLRKDVGTLAY-----------------------PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp S-SBEEEEETTSSTTCBSS-----------------------CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CeEEEEEcCCCCcceee-----------------------cccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 4 59999999875432110 1111122222 57999999999999998 99999999
Q ss_pred CCCCeeeeEe------eccCcccccCEEEEEeCCCeEEEEE
Q psy2685 232 MTKRTCLNTF------RREQERFWSEVIVSNAEDKSIRLWD 266 (992)
Q Consensus 232 l~~~~~l~~~------~~~~~~~~s~~l~sgs~Dg~I~vwd 266 (992)
+..+...... ...........+++++.|+.+.++-
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 290 FDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred EcccccceEecCceeEecCccccccceeEEEecCCceEEEE
Confidence 8664322111 1111111235677777787777764
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=6.6e-22 Score=245.96 Aligned_cols=344 Identities=8% Similarity=0.027 Sum_probs=236.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CC-----eEEEEEcCCCeEEEEeccCCCC------------------------EEEEE
Q psy2685 9 SARVKGLSFHPKRPWILSSLH-NG-----VIQLWDYRMNTLLEKFDEHEGP------------------------VRGIC 58 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~-dg-----~I~IWd~~~g~~~~~~~~h~~~------------------------V~~l~ 58 (992)
...|.+++|||||++|++++. ++ .|.+||..+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 8999999999887777554333 78999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCe--EEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCC
Q psy2685 59 FHNQQPIFVSGGDDYKIKVWNYKQRK--CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNH 136 (992)
Q Consensus 59 fspdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~ 136 (992)
|||||++|++++. +.|.+||+.++. ....+..|...+.+++|||||++|++++. +.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 899999998872 34456678889999999999999999885 5899999998887655544443
Q ss_pred C----------------eEEEEEecCCCEEEEEECCC-eEEEEECCCCcc------ccccCCcccCC--CeEEEEEccC-
Q psy2685 137 Y----------------VMCAQFHPTDDIVVSASLDQ-TIRVWDISGLRK------KNVAPGMGADD--RQIKLWRMND- 190 (992)
Q Consensus 137 ~----------------V~sl~fspdg~~L~sgs~Dg-~I~iwd~~~~~~------~~~~~~~~~~d--~~I~iwd~~~- 190 (992)
. +.+++|+|||+.|++++.|+ .+..|+...... ....+..+..+ ..|.+||..+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999887654 222222000000 00000011111 2666777776
Q ss_pred CcceEEEEEeccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeeEeeccCc--------ccc---cCEEE
Q psy2685 191 SKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE-----DKSIRLWDMTKRTCLNTFRREQE--------RFW---SEVIV 254 (992)
Q Consensus 191 ~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~-----Dg~I~vwdl~~~~~l~~~~~~~~--------~~~---s~~l~ 254 (992)
++...+.....|...+.+++| |||+.|++++. +..|.+||+.+++....+..+.. ..+ +.+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 553222111257788999999 99999987764 56899999999887666554332 222 36888
Q ss_pred EEeCCCeEEEEECC-CCeEEEEeecCCCCEEEE-EEeCCCCEEEEE-ECCCEEEEEecCCcceEEeeccEEEEEeCCeEE
Q psy2685 255 SNAEDKSIRLWDMT-KRTCLNTFRREQERFWVL-VAHPTLNLFAAG-HDAGMVVFKFERERPAYTVHNNVMYYVKERFLH 331 (992)
Q Consensus 255 sgs~Dg~I~vwd~~-t~~~v~~l~~h~~~V~~l-a~spdg~~Lasg-sddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~ 331 (992)
+++.||.+++|.+. ++. ...+..+...+..+ .|+|+|+.|+.. ++++ ...++
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~------------------------~~~~~ 407 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIES------------------------ARESQ 407 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSC------------------------TTCBE
T ss_pred EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC------------------------CceEE
Confidence 88899988888765 344 77777777788887 599999977654 3332 01233
Q ss_pred EEEeeC-CCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEe
Q psy2685 332 RLDLTN-SKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMI 386 (992)
Q Consensus 332 i~dl~~-~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l 386 (992)
+|++.. +... ..+. ....+..++|||||+.+++...+. ...+.+.+++.
T Consensus 408 l~~~~~~g~~~--~~l~--~~~~~~~~~~spdg~~l~~~~~~~--~~p~~~~l~~~ 457 (741)
T 2ecf_A 408 IYAVPLQGGQP--QRLS--KAPGMHSASFARNASVYVDSWSNN--STPPQIELFRA 457 (741)
T ss_dssp EEEEETTCCCC--EECC--CSCSEEEEEECTTSSEEEEEEEET--TEEEEEEEEET
T ss_pred EEEEEcCCCCe--eecc--cCCCceEEEECCCCCEEEEEecCC--CCCCeEEEEEc
Confidence 354432 2211 1222 134567999999999998876531 12245556654
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=6.5e-21 Score=246.60 Aligned_cols=371 Identities=8% Similarity=0.033 Sum_probs=259.8
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcC------CeEEEEEcCCCeEEEEeccCCCCE-------EEEEEecCCCEEEEE
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHN------GVIQLWDYRMNTLLEKFDEHEGPV-------RGICFHNQQPIFVSG 69 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~d------g~I~IWd~~~g~~~~~~~~h~~~V-------~~l~fspdg~~Lasg 69 (992)
+.+.+|...+.+++|||||++||+++.+ ..|.+||..+++ ...+..|...+ .+++|+|||+.++++
T Consensus 46 ~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~ 124 (1045)
T 1k32_A 46 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 124 (1045)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence 5678899999999999999999988653 379999988876 56788888888 999999999977777
Q ss_pred ECC------CeEEEEEcCCCeEE-------------------------------------------------EEEccCCC
Q psy2685 70 GDD------YKIKVWNYKQRKCI-------------------------------------------------FTLLGHLD 94 (992)
Q Consensus 70 s~D------g~I~VWd~~t~~~~-------------------------------------------------~~l~~h~~ 94 (992)
+.+ ..|.+||+.+++.. ..+.+|..
T Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 644 35777887665432 12245677
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEECCC-CeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcccccc
Q psy2685 95 YIRTTFFHHEYPWILSASDDQTIRIWNWQS-RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVA 173 (992)
Q Consensus 95 ~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t-~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~ 173 (992)
.+.++.|+++ .++++++.|+.+.+|.+.. +.....+..|. .+...+|+|+|+.+++++ ++.|.+||....
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~------ 275 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE------ 275 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC------
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce------
Confidence 8888999988 6667778889999998653 44455555555 466779999999888874 889999998432
Q ss_pred CCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCc-c----
Q psy2685 174 PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFH-PKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE-R---- 247 (992)
Q Consensus 174 ~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fs-pdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~-~---- 247 (992)
.+. .+.............|...+.+++|+ |+|+.|++++ ++.+.+|+..++.... +..+.. .
T Consensus 276 --------~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (1045)
T 1k32_A 276 --------KIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR 343 (1045)
T ss_dssp --------CEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE
T ss_pred --------Eee--eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee
Confidence 111 11110000001112356678999999 9999998887 7899999998876443 222222 1
Q ss_pred c--ccCEEEEEeCCCeEE-EEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEE
Q psy2685 248 F--WSEVIVSNAEDKSIR-LWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYY 324 (992)
Q Consensus 248 ~--~s~~l~sgs~Dg~I~-vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~ 324 (992)
. .+..++.++.++.+. +||..+++... +..+...+..++|||||+.|++++.++
T Consensus 344 ~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~---------------------- 400 (1045)
T 1k32_A 344 GGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRF---------------------- 400 (1045)
T ss_dssp CSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTS----------------------
T ss_pred eEcCCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCC----------------------
Confidence 1 235677888888888 99998876543 447778899999999999999887654
Q ss_pred EeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCC----ccccCCeEEEEEeCCCccccceeccCc
Q psy2685 325 VKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNA----NNFENSTYDLYMIPKEESERKEVADGK 400 (992)
Q Consensus 325 ~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~----~~~~~g~i~i~~l~~~~~~~~~~~~~~ 400 (992)
.+++||+.+++...+. ..|...+..++|||||+++++++.+. ....++.+.+|++.... .......
T Consensus 401 ----~v~~~d~~tg~~~~~~---~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~ 470 (1045)
T 1k32_A 401 ----EIMTVDLETGKPTVIE---RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTE 470 (1045)
T ss_dssp ----EEEEEETTTCCEEEEE---ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCS
T ss_pred ----eEEEEECCCCceEEec---cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCC
Confidence 4456888766643332 24677789999999999999887531 00123588999876532 2233344
Q ss_pred cccceEEEEecCCeEEEEE-cCCeEEEEE
Q psy2685 401 RSTGISAVWVARNRFAVLD-RNHTILIKN 428 (992)
Q Consensus 401 ~~~~~s~~w~~~~~~av~~-~~g~I~i~d 428 (992)
......+.|+++++.++.. ..+....|+
T Consensus 471 ~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 471 NSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp SSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 4456678899988755544 344444444
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=6.5e-22 Score=229.38 Aligned_cols=296 Identities=10% Similarity=0.069 Sum_probs=218.8
Q ss_pred CCEEEEEEcCCCC-EEEEEE----cCC----eEEEEEc--CCCeEE--EEeccCCCCEEEEEEec--------------C
Q psy2685 10 ARVKGLSFHPKRP-WILSSL----HNG----VIQLWDY--RMNTLL--EKFDEHEGPVRGICFHN--------------Q 62 (992)
Q Consensus 10 ~~V~~iafspdg~-~Lasg~----~dg----~I~IWd~--~~g~~~--~~~~~h~~~V~~l~fsp--------------d 62 (992)
..+...+|++.|. .+++|+ .+| .|++||+ .+++.+ ..+.+|...++.+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677778888875 555775 467 8999999 888877 45788888888887775 1
Q ss_pred CCEEEEEECC------CeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCC---eEEEEECCCCeeEEEEec
Q psy2685 63 QPIFVSGGDD------YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQ---TIRIWNWQSRNCICVLTG 133 (992)
Q Consensus 63 g~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg---~I~vwdl~t~~~i~~l~~ 133 (992)
+..++.++.+ +.|++||+.. .....+.+|...+.+++|+|+|+.|++++.++ .|++||+.++++. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5667666654 7999999975 44567778999999999999999999999885 9999999998875 5667
Q ss_pred CCCCeEEEEEecCCCEEE-EEECCCe--EEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEE
Q psy2685 134 HNHYVMCAQFHPTDDIVV-SASLDQT--IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVL 210 (992)
Q Consensus 134 h~~~V~sl~fspdg~~L~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~ 210 (992)
|...+.+++|+|+|+.|+ +++.++. |++||+.+. ....+..|...+.++.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~---------------------------~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---------------------------QIRQVTDGRSNNTEPT 273 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------------------------CEEECCCCSSCEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC---------------------------CEEeCcCCCCcccceE
Confidence 888999999999999887 6665554 777776542 2245667888899999
Q ss_pred EcCCCCEEEEEeC-CC--eEEEEECCCCeeeeEeeccCcc----cc---cCEEEEEeCC---CeEEEEECCCCeEEEEee
Q psy2685 211 FHPKSEVIVSNAE-DK--SIRLWDMTKRTCLNTFRREQER----FW---SEVIVSNAED---KSIRLWDMTKRTCLNTFR 277 (992)
Q Consensus 211 fspdg~~L~s~s~-Dg--~I~vwdl~~~~~l~~~~~~~~~----~~---s~~l~sgs~D---g~I~vwd~~t~~~v~~l~ 277 (992)
|+|+|+.|++++. ++ .|.+||+.+++.. .+..+... .+ +..+++++.+ ..|.+||+.+++.. .+.
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 9999999988886 44 6888899887643 22222221 12 3677776654 58999999988764 454
Q ss_pred cCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeE
Q psy2685 278 REQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSI 357 (992)
Q Consensus 278 ~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~l 357 (992)
.+. .+.+++|+|+|+.|++++.++- ...+.+||+.++. ...+ ..+...|.++
T Consensus 352 ~~~-~~~~~~~spdg~~l~~~s~~~~-----------------------~~~l~~~d~~g~~---~~~l-~~~~~~v~~~ 403 (415)
T 2hqs_A 352 STF-LDETPSLAPNGTMVIYSSSQGM-----------------------GSVLNLVSTDGRF---KARL-PATDGQVKFP 403 (415)
T ss_dssp CSS-SCEEEEECTTSSEEEEEEEETT-----------------------EEEEEEEETTSCC---EEEC-CCSSSEEEEE
T ss_pred CCC-CcCCeEEcCCCCEEEEEEcCCC-----------------------ccEEEEEECCCCc---EEEe-eCCCCCCcCC
Confidence 443 8899999999999888764321 0135557775433 2233 2467889999
Q ss_pred EEccCCC
Q psy2685 358 SYNATEH 364 (992)
Q Consensus 358 afspdg~ 364 (992)
+|+|...
T Consensus 404 ~~~~~~~ 410 (415)
T 2hqs_A 404 AWSPYLH 410 (415)
T ss_dssp EECCCCC
T ss_pred ccccccc
Confidence 9999743
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.4e-19 Score=202.77 Aligned_cols=269 Identities=7% Similarity=0.020 Sum_probs=210.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-------CCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEEc
Q psy2685 9 SARVKGLSFHPKRPWILSSLH-------NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG-GDDYKIKVWNY 80 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~-------dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~VWd~ 80 (992)
...+..++|+|+++.+++++. ++.|.+||..+++.+..+.. ...+.+++|+|+|+.++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 56899999999998888864 3457889999999966554 55799999999
Q ss_pred CCCeEEEEEccCCCC---------EEEEEEecCCCEEEEEE--CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCE
Q psy2685 81 KQRKCIFTLLGHLDY---------IRTTFFHHEYPWILSAS--DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDI 149 (992)
Q Consensus 81 ~t~~~~~~l~~h~~~---------V~~i~fspd~~~L~sgs--~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~ 149 (992)
.+++.+..+..+... +.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 999988887655432 78999999999887776 4789999999999999888766777889999999999
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEE
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE-DKSIR 228 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~ 228 (992)
+++++.++.|.+||..+.+.. ..+... ..++...+.+++|+|+++.+++++. ++.|.
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~-------------~~~~~~---------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKIL-------------SRKKLL---------DDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEE-------------EEEECC---------CSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred EEEEcCCCeEEEEECCCCeEE-------------EEEEcC---------CCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 999999999999998764311 111110 1124556889999999997766655 59999
Q ss_pred EEECCCCeeeeEeeccCccc--c---cC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECC
Q psy2685 229 LWDMTKRTCLNTFRREQERF--W---SE-VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDA 301 (992)
Q Consensus 229 vwdl~~~~~l~~~~~~~~~~--~---s~-~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsdd 301 (992)
+||..+++.+..+....... + +. ++++...++.|.+||..+++.+..+... ....+++|+|+|++|.++..+
T Consensus 257 ~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 257 VVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred EEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 99999998887776543221 1 34 4555557999999999999988887654 467899999999976665543
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.5e-21 Score=241.79 Aligned_cols=335 Identities=10% Similarity=0.047 Sum_probs=228.0
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCC---CEEEEEEecCCCEEEEEECC---------CeEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEG---PVRGICFHNQQPIFVSGGDD---------YKIKV 77 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~---~V~~l~fspdg~~Lasgs~D---------g~I~V 77 (992)
..+.+++|+|||+++++ +.||.|++||..+++....+..|.. .|.+++|||||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678999999997766 6899999999999988888877665 49999999999999999874 78889
Q ss_pred EEcCCCeEEEEEc---cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCe----------------
Q psy2685 78 WNYKQRKCIFTLL---GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYV---------------- 138 (992)
Q Consensus 78 Wd~~t~~~~~~l~---~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V---------------- 138 (992)
||+.+++. ..+. +|...+..++|||||+.|++++. +.|++||..+++.......+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 3333 34455889999999999999887 799999999888776666544433
Q ss_pred --EEEEEecCCCEEEEEECC-CeEEEEECCCCcccccc---------CCcccCCCeEEEEEccCCcceEEEEEecc----
Q psy2685 139 --MCAQFHPTDDIVVSASLD-QTIRVWDISGLRKKNVA---------PGMGADDRQIKLWRMNDSKAWEVDIFRGH---- 202 (992)
Q Consensus 139 --~sl~fspdg~~L~sgs~D-g~I~iwd~~~~~~~~~~---------~~~~~~d~~I~iwd~~~~~~~~i~~l~~h---- 202 (992)
.+++|+|||+.|++++.| +.+.+|++......... .+....+..+.+||..++.. ...+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~ 251 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPR 251 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGG
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCC
Confidence 789999999999888765 46777776422111000 00112234899999987763 2333333
Q ss_pred --CCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeeEeeccC---------ccccc---CEEE-E-EeCCC--
Q psy2685 203 --YNNVSCVLFHPKSEVIVSNAE----DKSIRLWDMTKRTCLNTFRREQ---------ERFWS---EVIV-S-NAEDK-- 260 (992)
Q Consensus 203 --~~~V~~v~fspdg~~L~s~s~----Dg~I~vwdl~~~~~l~~~~~~~---------~~~~s---~~l~-s-gs~Dg-- 260 (992)
...+.++.|+|||+++++.+. +..|.+||+.+++....+..+. ...++ ..++ . +..++
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 567899999999998877653 3579999999988765543321 22232 4343 3 55666
Q ss_pred ----eEEEEE-CCCCe--EEEEeecCCCCEEE-EEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEE
Q psy2685 261 ----SIRLWD-MTKRT--CLNTFRREQERFWV-LVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHR 332 (992)
Q Consensus 261 ----~I~vwd-~~t~~--~v~~l~~h~~~V~~-la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i 332 (992)
.|.+|| ..++. +...+..+...+.. ++|+|+|+.|+..+.++. ...+++
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~-----------------------~~~~~l 388 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDL-----------------------PRRRQL 388 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSC-----------------------TTCCEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCC-----------------------CcceEE
Confidence 577777 34443 14444433444544 699999999876554310 022334
Q ss_pred EEeeCCCceEEEEeecC--CCccceeEEEccCCCEEEEEecC
Q psy2685 333 LDLTNSKDSVVMQLRGG--GRIPAHSISYNATEHSILVTTRN 372 (992)
Q Consensus 333 ~dl~~~~~~~v~~l~~~--~~~~I~~lafspdg~~lav~~~~ 372 (992)
|++..........+... +...+..++|+|||+++++...+
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 55433221111112211 35567899999999999987654
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=4.1e-20 Score=221.66 Aligned_cols=267 Identities=12% Similarity=0.128 Sum_probs=207.9
Q ss_pred cEEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEc--CCCeEEEEeccCCCCEEEEEEec----CCCEEEEEEC-CCe
Q psy2685 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDY--RMNTLLEKFDEHEGPVRGICFHN----QQPIFVSGGD-DYK 74 (992)
Q Consensus 2 l~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~--~~g~~~~~~~~h~~~V~~l~fsp----dg~~Lasgs~-Dg~ 74 (992)
+.++..+.. +.+++|+|||++|++++.++.|.+||+ .+++.+.++. +...+.+++|+| +|+++++++. +++
T Consensus 172 ~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 172 VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 345663333 899999999999999999999999999 8899888887 455679999999 9999998874 899
Q ss_pred EEEEEcCCCeEEEEEcc----------CC-CCEEEEEEecCCCE-EEEEECCCeEEEEECCCCeeEE--EEecCCCCeEE
Q psy2685 75 IKVWNYKQRKCIFTLLG----------HL-DYIRTTFFHHEYPW-ILSASDDQTIRIWNWQSRNCIC--VLTGHNHYVMC 140 (992)
Q Consensus 75 I~VWd~~t~~~~~~l~~----------h~-~~V~~i~fspd~~~-L~sgs~Dg~I~vwdl~t~~~i~--~l~~h~~~V~s 140 (992)
|.+||..+++++..+.. |. ..+..+.++|+++. +++...++.|.+||+.+.+.+. .+ .+...+.+
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~ 328 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHD 328 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCC
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccC
Confidence 99999999999888764 22 37899999998764 5566778999999998765443 34 36677889
Q ss_pred EEEecCCCEEEEEE-CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe----ccCCCeEEEEEcCC-
Q psy2685 141 AQFHPTDDIVVSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR----GHYNNVSCVLFHPK- 214 (992)
Q Consensus 141 l~fspdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~----~h~~~V~~v~fspd- 214 (992)
+.|+|+++++++++ .+++|.+||..+.+ ....+. .|.+....+ ++|+
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~--------------------------l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKDRR--------------------------LSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTE--------------------------EEEEEECSSSBCCTTCEEE-EETTT
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCCCe--------------------------EEEeeccCCCCCCCCCccc-CCCCC
Confidence 99999999776655 58899999987643 222222 255444443 5777
Q ss_pred CCEEEEEe-CCCeEEEEECCC-------CeeeeEeeccCcccc-------cCEEEEEe-------CCCeEEEEECCCCeE
Q psy2685 215 SEVIVSNA-EDKSIRLWDMTK-------RTCLNTFRREQERFW-------SEVIVSNA-------EDKSIRLWDMTKRTC 272 (992)
Q Consensus 215 g~~L~s~s-~Dg~I~vwdl~~-------~~~l~~~~~~~~~~~-------s~~l~sgs-------~Dg~I~vwd~~t~~~ 272 (992)
+.++++++ .|++|.+||+.+ +++++++..+....+ +..+++++ .+++|.+||+.+++.
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 66677775 589999999998 889999988764422 37888876 277999999999887
Q ss_pred E-EEe--------ecCCCCEEEEEEeCCCCEEEEE
Q psy2685 273 L-NTF--------RREQERFWVLVAHPTLNLFAAG 298 (992)
Q Consensus 273 v-~~l--------~~h~~~V~~la~spdg~~Lasg 298 (992)
. ..+ ..+...+..++|+|+|+.+.++
T Consensus 462 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 462 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred CeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 6 443 3456789999999999988865
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=4.9e-21 Score=221.98 Aligned_cols=258 Identities=7% Similarity=0.006 Sum_probs=200.0
Q ss_pred EeecCCCCEEEEEEcC--------------CCCEEEEEEcC------CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCC
Q psy2685 4 KFETKSARVKGLSFHP--------------KRPWILSSLHN------GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63 (992)
Q Consensus 4 ~l~~H~~~V~~iafsp--------------dg~~Lasg~~d------g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg 63 (992)
++.+|...+..+++++ .+..++.++.+ +.|++||+..+ ....+..|...|.+++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCC
Confidence 4677777777777665 26677776664 79999998744 456777899999999999999
Q ss_pred CEEEEEECCC---eEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEE-EEECCCe--EEEEECCCCeeEEEEecCCCC
Q psy2685 64 PIFVSGGDDY---KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQT--IRIWNWQSRNCICVLTGHNHY 137 (992)
Q Consensus 64 ~~Lasgs~Dg---~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~-sgs~Dg~--I~vwdl~t~~~i~~l~~h~~~ 137 (992)
+.|++++.++ .|++||+.+++.. .+..|.+.+.+++|+|+|+.|+ +++.++. |++||+.+++. ..+..|...
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence 9999999875 9999999998875 5667888999999999999887 6665554 99999988775 567778889
Q ss_pred eEEEEEecCCCEEEEEEC-CC--eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC
Q psy2685 138 VMCAQFHPTDDIVVSASL-DQ--TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK 214 (992)
Q Consensus 138 V~sl~fspdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd 214 (992)
+.+++|+|+|+.|++++. ++ .|.+||+.+.. ...+..|...+.++.|+|+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------------------~~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------------------PQRITWEGSQNQDADVSSD 321 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------------------CEECCCSSSEEEEEEECTT
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------------------EEEEecCCCcccCeEECCC
Confidence 999999999999988886 44 45556665421 1234456677889999999
Q ss_pred CCEEEEEeCC---CeEEEEECCCCeeeeEeeccCc---ccc---cCEEEEEeCCC---eEEEEECCCCeEEEEeecCCCC
Q psy2685 215 SEVIVSNAED---KSIRLWDMTKRTCLNTFRREQE---RFW---SEVIVSNAEDK---SIRLWDMTKRTCLNTFRREQER 282 (992)
Q Consensus 215 g~~L~s~s~D---g~I~vwdl~~~~~l~~~~~~~~---~~~---s~~l~sgs~Dg---~I~vwd~~t~~~v~~l~~h~~~ 282 (992)
|++|++++.+ ..|.+||+.+++.. .+..+.. ..+ +..+++++.++ .|++||+. +.....+..+.+.
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~ 399 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ 399 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC
Confidence 9999988764 58999999988764 3333221 112 36777777766 79999987 4557788889999
Q ss_pred EEEEEEeCCCC
Q psy2685 283 FWVLVAHPTLN 293 (992)
Q Consensus 283 V~~la~spdg~ 293 (992)
|.+++|+|...
T Consensus 400 v~~~~~~~~~~ 410 (415)
T 2hqs_A 400 VKFPAWSPYLH 410 (415)
T ss_dssp EEEEEECCCCC
T ss_pred CcCCccccccc
Confidence 99999999754
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=7.3e-21 Score=246.15 Aligned_cols=386 Identities=10% Similarity=-0.017 Sum_probs=267.7
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCC-CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRM-NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~-g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+.+|...+.++.|+++ ..+++++.+|.+.||.+.. +.....+..|. .+...+|+|+|++++++ .++.|.+||..
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 456789999999999998 6666777889999998653 43445555554 45677999999998887 48899999985
Q ss_pred CCeEEEEEcc-----------CCCCEEEEEEe-cCCCEEEEEECCCeEEEEECCCCeeEEEEecCCC-CeEEEEEecCCC
Q psy2685 82 QRKCIFTLLG-----------HLDYIRTTFFH-HEYPWILSASDDQTIRIWNWQSRNCICVLTGHNH-YVMCAQFHPTDD 148 (992)
Q Consensus 82 t~~~~~~l~~-----------h~~~V~~i~fs-pd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~-~V~sl~fspdg~ 148 (992)
.+... .+.. |...+.+++|+ |+|+.+++++ ++.+.+|+..++... .+..|.. .+.+++|+ +|+
T Consensus 274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence 55443 5444 34468999999 9999999888 789999999877644 4566777 89999999 999
Q ss_pred EEEEEECCCeEE-EEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy2685 149 IVVSASLDQTIR-VWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSI 227 (992)
Q Consensus 149 ~L~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I 227 (992)
.+++++.++.+. +||..+.. ...+.+|...+.+++|+|||++|++++.++.|
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~---------------------------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v 402 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGK---------------------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 402 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCC---------------------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEEECCCceEEEEECCCCC---------------------------ceEecCCccceeeeEECCCCCEEEEECCCCeE
Confidence 999999887777 77876421 22334677889999999999999999999999
Q ss_pred EEEECCCCeeeeEeeccCccc----c---cCEEEEEeCC----------CeEEEEECCCCeEEEEeecCCCCEEEEEEeC
Q psy2685 228 RLWDMTKRTCLNTFRREQERF----W---SEVIVSNAED----------KSIRLWDMTKRTCLNTFRREQERFWVLVAHP 290 (992)
Q Consensus 228 ~vwdl~~~~~l~~~~~~~~~~----~---s~~l~sgs~D----------g~I~vwd~~t~~~v~~l~~h~~~V~~la~sp 290 (992)
++||+.+++.......+...+ + +..+++++.+ +.|++||+.+++ +..+..|...+..++|+|
T Consensus 403 ~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 403 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT
T ss_pred EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC
Confidence 999999998777765554332 2 3677777654 489999999987 667778888899999999
Q ss_pred CCCEEEEEECC-CEEEEEecCCcceEEeeccEEEEEe--CCe--------------EEEEEeeCCCceEEEEeecCCCcc
Q psy2685 291 TLNLFAAGHDA-GMVVFKFERERPAYTVHNNVMYYVK--ERF--------------LHRLDLTNSKDSVVMQLRGGGRIP 353 (992)
Q Consensus 291 dg~~Lasgsdd-giivw~l~~~~~~~~~~~~~v~~~~--~~~--------------i~i~dl~~~~~~~v~~l~~~~~~~ 353 (992)
+|+.|++++++ +...|+.......+. +...++.+. ... ...|++.. ....+..+. .+...
T Consensus 482 dG~~l~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g-~~~~~~~l~-~~~~~ 558 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDRVVLNFSFE-VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND-MYKRSSPIN-VDPGD 558 (1045)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECC-SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT-GGGGCEECS-CCCBC
T ss_pred CCCEEEEEecccCCcCcchhccccccc-cCceeEEEEeCCCCCCccccCcCccccccccccccC-HhHceEEcC-CCCCC
Confidence 99998887754 445665442222111 111121110 000 01133322 111222232 24567
Q ss_pred ceeEEEccCCCEEEEEecCC-------ccccCCeEEEEEeCCCccccceeccCccccceEEEEecCCeEEEEEcCCeEEE
Q psy2685 354 AHSISYNATEHSILVTTRNA-------NNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILI 426 (992)
Q Consensus 354 I~~lafspdg~~lav~~~~~-------~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~~av~~~~g~I~i 426 (992)
+..++++|||..+++.+... .......+..|++...... ... ..+.++.|+++++.++....+.+.+
T Consensus 559 ~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~---~l~---~~v~~~~~S~DG~~l~~~~~~~i~~ 632 (1045)
T 1k32_A 559 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVK---NNLTDLRLSADRKTVMVRKDDGKIY 632 (1045)
T ss_dssp EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEE---EEEEEEEECTTSCEEEEEETTSCEE
T ss_pred hhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE---Eee---cCcceEEECCCCCEEEEEcCCcEEE
Confidence 88999999998777522100 0012345555655443321 111 3455678899998777777778999
Q ss_pred EEcCCc
Q psy2685 427 KNLKNE 432 (992)
Q Consensus 427 ~dl~~~ 432 (992)
||+.+.
T Consensus 633 ~d~~~~ 638 (1045)
T 1k32_A 633 TFPLEK 638 (1045)
T ss_dssp EEESSC
T ss_pred EeCccC
Confidence 998654
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.1e-20 Score=202.51 Aligned_cols=267 Identities=8% Similarity=0.021 Sum_probs=192.1
Q ss_pred EEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEccC-CCCEEEEEEecC
Q psy2685 27 SLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ-RKCIFTLLGH-LDYIRTTFFHHE 104 (992)
Q Consensus 27 g~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h-~~~V~~i~fspd 104 (992)
++.++.|++||..+++... +..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......| ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 3568999999999887664 446889999999999999999986 78999999998 8776666555 367889999999
Q ss_pred CCEEEEEE--CCCeEEE--EECCCCeeEEEEecCCCCeEEEEEecCCCEEE-EEECCCeEEEEECCCCccccccCCcccC
Q psy2685 105 YPWILSAS--DDQTIRI--WNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV-SASLDQTIRVWDISGLRKKNVAPGMGAD 179 (992)
Q Consensus 105 ~~~L~sgs--~Dg~I~v--wdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 179 (992)
++++++++ .++...+ |+..++. ...+..+ ..+.+++|+|+++.++ +++.++.+.+|++....
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----------- 162 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----------- 162 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-----------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC-----------
Confidence 99999998 3344455 4555544 3444433 4589999999999877 77888988888864211
Q ss_pred CCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeC
Q psy2685 180 DRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAE 258 (992)
Q Consensus 180 d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~ 258 (992)
.....+..|...+.++.|+|+++.|+.++ .++.+++|++..
T Consensus 163 --------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~------------------------ 204 (297)
T 2ojh_A 163 --------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV------------------------ 204 (297)
T ss_dssp --------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------------------
T ss_pred --------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC------------------------
Confidence 02344556778899999999999887666 488888886531
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCC
Q psy2685 259 DKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNS 338 (992)
Q Consensus 259 Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~ 338 (992)
. +..+..+..+...+.+++|+|+|++|++++.++.... .+. .....+.+||+.++
T Consensus 205 ---------~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-----~~~----------~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 205 ---------D-GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD-----HPR----------DLDVRVQLMDMDGG 259 (297)
T ss_dssp ---------T-SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS-----CCS----------SEEEEEEEEETTSC
T ss_pred ---------C-CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc-----ccc----------cCceEEEEEecCCC
Confidence 1 1223344455567888999999999887764321000 000 01245677888777
Q ss_pred CceEEEEeecCCCccceeEEEccCCCEEEEEecC
Q psy2685 339 KDSVVMQLRGGGRIPAHSISYNATEHSILVTTRN 372 (992)
Q Consensus 339 ~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~ 372 (992)
+...+..+. .+...+..++|+|+|+.|++++.+
T Consensus 260 ~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 260 NVETLFDLF-GGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SCEEEEEEE-ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CceeeeccC-CCCcccccceECCCCCEEEEEEec
Confidence 655555443 346678899999999999988764
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=5.5e-19 Score=196.54 Aligned_cols=289 Identities=10% Similarity=0.095 Sum_probs=197.4
Q ss_pred EEEcCCCCE-EEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCCCeE-EEEEcc
Q psy2685 15 LSFHPKRPW-ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD-DYKIKVWNYKQRKC-IFTLLG 91 (992)
Q Consensus 15 iafspdg~~-Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~VWd~~t~~~-~~~l~~ 91 (992)
..|++++.. +++++.++.|.+||..+++....+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 356666665 5566778999999999999988887666667 9999999997776665 88999999999887 677777
Q ss_pred CCCCEEEEEEecCCCEEEEEECCC---eEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEE-EEECCCe-EEEEECCC
Q psy2685 92 HLDYIRTTFFHHEYPWILSASDDQ---TIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV-SASLDQT-IRVWDISG 166 (992)
Q Consensus 92 h~~~V~~i~fspd~~~L~sgs~Dg---~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~Dg~-I~iwd~~~ 166 (992)
+..+..+++|+|++++++++..++ .|.+||+.+++.+..+..+ ....+++|+|+|++++ ++..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 766666699999999998555553 8999999999988887754 4568999999997554 4556677 99999864
Q ss_pred CccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeeEeeccC
Q psy2685 167 LRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVS-NAEDKSIRLWDMTKRTCLNTFRREQ 245 (992)
Q Consensus 167 ~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s-~s~Dg~I~vwdl~~~~~l~~~~~~~ 245 (992)
.. .+. +. . ...........++.|+|+|+++++ +..++.|.+||+.+++...
T Consensus 161 ~g-------------~~~--~~------~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~------ 212 (331)
T 3u4y_A 161 DG-------------VLF--DT------G-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT------ 212 (331)
T ss_dssp TC-------------CEE--EE------E-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE------
T ss_pred CC-------------cEe--ec------C-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc------
Confidence 21 110 00 1 111233456789999999996554 4467888888877654310
Q ss_pred cccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEE
Q psy2685 246 ERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYV 325 (992)
Q Consensus 246 ~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~ 325 (992)
.+..+.. ...+..++|+|+|+++++++...
T Consensus 213 --------------------------~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~----------------------- 242 (331)
T 3u4y_A 213 --------------------------LLNAVGT-NNLPGTIVVSRDGSTVYVLTEST----------------------- 242 (331)
T ss_dssp --------------------------EEEEEEC-SSCCCCEEECTTSSEEEEECSSE-----------------------
T ss_pred --------------------------eeeeccC-CCCCceEEECCCCCEEEEEEcCC-----------------------
Confidence 1223322 24556789999999776654311
Q ss_pred eCCeEEEEEeeCCCceEEEEeecC------CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCc
Q psy2685 326 KERFLHRLDLTNSKDSVVMQLRGG------GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 326 ~~~~i~i~dl~~~~~~~v~~l~~~------~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
+.+.+||..+++...+..+... .......++|+|||+++++++.+ ++.+.+|++....
T Consensus 243 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 --VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-----SRELKVFTISGKV 306 (331)
T ss_dssp --EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT-----TTEEEEEETTSCE
T ss_pred --CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC-----CCcEEEEEecCCc
Confidence 1233455544443222222211 11122458999999999887643 5799999987643
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=9.7e-20 Score=225.22 Aligned_cols=342 Identities=10% Similarity=0.053 Sum_probs=224.5
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEE-EEeccCC-----------------CCEEEEEEecCCCEEEEEECCC
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLL-EKFDEHE-----------------GPVRGICFHNQQPIFVSGGDDY 73 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~-~~~~~h~-----------------~~V~~l~fspdg~~Lasgs~Dg 73 (992)
+..+.|+ +..+++++.+| | +||..+|+.+ ..+..|. ..|.+++|||+ ..++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 5567888 66777777777 8 9999999773 3333332 56999999999 6666554 59
Q ss_pred eEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC-----CeeEEEEecCCCC-----------
Q psy2685 74 KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS-----RNCICVLTGHNHY----------- 137 (992)
Q Consensus 74 ~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t-----~~~i~~l~~h~~~----------- 137 (992)
.|.+||+.+++... +..+...+.+++|+|+|+.|+++ .|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 99999999887654 44567778899999999999985 679999999998 7766544444332
Q ss_pred ---eEEEEEecCCCEEEEEECCC-eEEEE---ECCCCccc-----cccCCcccCCCeEEEEEccCCcceEEEEEeccCCC
Q psy2685 138 ---VMCAQFHPTDDIVVSASLDQ-TIRVW---DISGLRKK-----NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNN 205 (992)
Q Consensus 138 ---V~sl~fspdg~~L~sgs~Dg-~I~iw---d~~~~~~~-----~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~ 205 (992)
+.++.|+|||++|++++.|. .+..+ +....... ....+....+..|.+||+.++....+.....|...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 47899999999999987331 12111 11111000 00011222346788888877653222222256678
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeeEee-ccC--------ccc-----ccCEEEEEeCCCeEEEEE
Q psy2685 206 VSCVLFHPKSEVIVSNAEDK-----SIRLWDMTKRTCLNTFR-REQ--------ERF-----WSEVIVSNAEDKSIRLWD 266 (992)
Q Consensus 206 V~~v~fspdg~~L~s~s~Dg-----~I~vwdl~~~~~l~~~~-~~~--------~~~-----~s~~l~sgs~Dg~I~vwd 266 (992)
+.++.|+|||+.|++++.++ .|.+||+.+++....+. ... ... .+.++++++.|+.+++|+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999888776 89999999983332221 111 112 235788888899999998
Q ss_pred CC-CCeEEEEeecCCCCEEE-EEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEE
Q psy2685 267 MT-KRTCLNTFRREQERFWV-LVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVM 344 (992)
Q Consensus 267 ~~-t~~~v~~l~~h~~~V~~-la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~ 344 (992)
+. ++..+..+..+...+.. ++|+|+|+.|+.++.+.- .....+..||+.+++. .
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~---------------------~~~~~l~~~d~~~~~~---~ 395 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS---------------------PLERHFYCIDIKGGKT---K 395 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC---------------------TTCBEEEEEETTCCCC---E
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC---------------------CceEEEEEEEcCCCCc---e
Confidence 76 66777788777777876 799999998776544211 0001233355544432 1
Q ss_pred EeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCC
Q psy2685 345 QLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 345 ~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
.+ .+...+..++|||||+++++.+.+ ....+.+.+|++...
T Consensus 396 ~l--~~~~~~~~~~~spdg~~l~~~~~~--~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 396 DL--TPESGMHRTQLSPDGSAIIDIFQS--PTVPRKVTVTNIGKG 436 (706)
T ss_dssp ES--CCSSSEEEEEECTTSSEEEEEEEC--SSCSCEEEEEESSSC
T ss_pred ec--cCCCceEEEEECCCCCEEEEEecC--CCCCcEEEEEECCCC
Confidence 22 134567899999999999887653 123466888887654
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=6.2e-20 Score=198.77 Aligned_cols=247 Identities=10% Similarity=-0.012 Sum_probs=178.8
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCC-CeEEEEeccC-CCCEEEEEEecCCCEEEEEE--CCCeEEEE
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRM-NTLLEKFDEH-EGPVRGICFHNQQPIFVSGG--DDYKIKVW 78 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~-g~~~~~~~~h-~~~V~~l~fspdg~~Lasgs--~Dg~I~VW 78 (992)
..+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|+|++|++++ .++...||
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 35667889999999999999999986 88999999998 8777666555 36789999999999999998 33455555
Q ss_pred E--cCCCeEEEEEccCCCCEEEEEEecCCCEEE-EEECCCeEEEEECCC-CeeEEEEecCCCCeEEEEEecCCCEEEEEE
Q psy2685 79 N--YKQRKCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQTIRIWNWQS-RNCICVLTGHNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 79 d--~~t~~~~~~l~~h~~~V~~i~fspd~~~L~-sgs~Dg~I~vwdl~t-~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 154 (992)
. ..++. ...+..+ ..+..++|+|+++.++ +++.++.+.+|+++. +.....+..|...+.+++|+|+++.+++++
T Consensus 114 ~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 4 44554 3334333 4589999999999877 788899999998642 334456667888999999999999888766
Q ss_pred -CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy2685 155 -LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT 233 (992)
Q Consensus 155 -~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~ 233 (992)
.++.+.+|++.... .....+..|...+.++.|+|++++|++++.++....+.
T Consensus 192 ~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~-- 244 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDG-------------------------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP-- 244 (297)
T ss_dssp CTTSSCEEEEEETTS-------------------------SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC--
T ss_pred cCCCCccEEEECCCC-------------------------CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc--
Confidence 48888888764211 13345566777889999999999998887753210000
Q ss_pred CCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCEEEEEEeCCCCEEEEEECC
Q psy2685 234 KRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTC--LNTFRREQERFWVLVAHPTLNLFAAGHDA 301 (992)
Q Consensus 234 ~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~--v~~l~~h~~~V~~la~spdg~~Lasgsdd 301 (992)
...++.|.+||+.+++. +..+..|...+.+++|+|+++.|++++++
T Consensus 245 ----------------------~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 245 ----------------------RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ----------------------SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ----------------------ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 00012344555555433 34445677788899999999988877643
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=5.3e-19 Score=219.76 Aligned_cols=327 Identities=9% Similarity=0.051 Sum_probs=222.2
Q ss_pred CCCEEEEEEecCCCEEEEEEC-CC-----eEEEEEcCCCeEEEEEccCCCC------------------------EEEEE
Q psy2685 51 EGPVRGICFHNQQPIFVSGGD-DY-----KIKVWNYKQRKCIFTLLGHLDY------------------------IRTTF 100 (992)
Q Consensus 51 ~~~V~~l~fspdg~~Lasgs~-Dg-----~I~VWd~~t~~~~~~l~~h~~~------------------------V~~i~ 100 (992)
...+.+++|+|||++|++++. || .|.+||+.+++....+..+... +.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 9999999999887777654333 78899
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCe--eEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCccc
Q psy2685 101 FHHEYPWILSASDDQTIRIWNWQSRN--CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGA 178 (992)
Q Consensus 101 fspd~~~L~sgs~Dg~I~vwdl~t~~--~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 178 (992)
|||||++|++++. +.|.+||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~--- 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTAD--- 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCC---
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccC---
Confidence 9999999999987 899999998873 34556678888999999999999999874 6899999876432211100
Q ss_pred CCCeEEEEEccCCcceEEEEEecc--------CCCeEEEEEcCCCCEEEEEeCCC-------------------------
Q psy2685 179 DDRQIKLWRMNDSKAWEVDIFRGH--------YNNVSCVLFHPKSEVIVSNAEDK------------------------- 225 (992)
Q Consensus 179 ~d~~I~iwd~~~~~~~~i~~l~~h--------~~~V~~v~fspdg~~L~s~s~Dg------------------------- 225 (992)
... . ...++ ...+.++.|||||+.|++++.|+
T Consensus 191 -----------~~~--~--~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 191 -----------GST--T--IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp -----------CCS--S--EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred -----------Ccc--c--eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 000 0 00011 12257899999999999988766
Q ss_pred --------eEEEEECCC-CeeeeEeec--cCcc------cccCEEEEEeC-----CCeEEEEECCCCeEEEEeecCCC--
Q psy2685 226 --------SIRLWDMTK-RTCLNTFRR--EQER------FWSEVIVSNAE-----DKSIRLWDMTKRTCLNTFRREQE-- 281 (992)
Q Consensus 226 --------~I~vwdl~~-~~~l~~~~~--~~~~------~~s~~l~sgs~-----Dg~I~vwd~~t~~~v~~l~~h~~-- 281 (992)
.|.+||+.+ ++....... +... ..+..++.++. +..|.+||+.+++....+..+..
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 889999988 765433221 1111 12355665543 56899999999988776665543
Q ss_pred --CEEEEEEeCCCCEEEEEECCCE-EEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeE-
Q psy2685 282 --RFWVLVAHPTLNLFAAGHDAGM-VVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSI- 357 (992)
Q Consensus 282 --~V~~la~spdg~~Lasgsddgi-ivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~l- 357 (992)
.+..++|+|||+++++++.++. .+|. ++.. +. ...+. .+...+..+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~-------------------------~~~~-~~---~~~l~-~~~~~v~~~~ 385 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYR-------------------------IDSK-GK---AAALT-HGNWSVDELL 385 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEE-------------------------ECSS-SC---EEESC-CSSSCEEEEE
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEE-------------------------EcCC-CC---eeeee-ecceEEEeEe
Confidence 3467899999998888776652 3332 2221 11 23332 335566676
Q ss_pred EEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceeccCccccceEEEEecCCeEEEEEc-C----CeEEEEEcCCc
Q psy2685 358 SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDR-N----HTILIKNLKNE 432 (992)
Q Consensus 358 afspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~~av~~~-~----g~I~i~dl~~~ 432 (992)
.|+|+|+.+++.+.. .....+++|.+..... ....... .....++.|+++++.++... + ..+.+++....
T Consensus 386 ~~s~dg~~l~~~~~~---~~~~~~~l~~~~~~g~-~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGI---ESARESQIYAVPLQGG-QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEETTTTEEEEEECS---SCTTCBEEEEEETTCC-CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEeCCCCEEEEEEeC---CCCceEEEEEEEcCCC-Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 599999988876643 1123788998864221 1122222 33446788999887665443 2 46778877544
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=2.7e-18 Score=190.92 Aligned_cols=251 Identities=10% Similarity=0.138 Sum_probs=175.5
Q ss_pred CEEEEE-EcCCeEEEEEcC-CC--eEEEEeccCCCCEEEEEEecCCCEEEEEECC-CeEEEEEcC--CCe--EEEEEccC
Q psy2685 22 PWILSS-LHNGVIQLWDYR-MN--TLLEKFDEHEGPVRGICFHNQQPIFVSGGDD-YKIKVWNYK--QRK--CIFTLLGH 92 (992)
Q Consensus 22 ~~Lasg-~~dg~I~IWd~~-~g--~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D-g~I~VWd~~--t~~--~~~~l~~h 92 (992)
++++++ +.++.|.+||+. ++ +.+..+ .+...+.+++|+|+|+++++++.+ +.|.+|++. +++ .+..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 344444 679999999985 34 333333 477788999999999999888876 999999997 554 33444444
Q ss_pred CCCEEEEEEecCCCEEEEEEC-CCeEEEEECC---CCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEECCCC
Q psy2685 93 LDYIRTTFFHHEYPWILSASD-DQTIRIWNWQ---SRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDISGL 167 (992)
Q Consensus 93 ~~~V~~i~fspd~~~L~sgs~-Dg~I~vwdl~---t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd~~~~ 167 (992)
. .+..++|+|+++++++++. ++.|.+||+. +.+....+.. ...+.+++|+|+++.+++++ .++.|.+||+...
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 3 7889999999998877765 8899999994 4445555554 34588999999999888887 8899999998652
Q ss_pred ccccccCCcccCCCeEEEEEccCCcceEEE--EEec-cCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC--Cee--ee
Q psy2685 168 RKKNVAPGMGADDRQIKLWRMNDSKAWEVD--IFRG-HYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMTK--RTC--LN 239 (992)
Q Consensus 168 ~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~--~l~~-h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~~--~~~--l~ 239 (992)
. .+. ... .... ....+.++.|+|+++++++++ .++.|.+|++.. +.. ..
T Consensus 162 ~-------------~~~----------~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 162 G-------------HLV----------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp S-------------CEE----------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred C-------------cee----------eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 1 110 111 1222 234678899999999765554 789999999954 432 22
Q ss_pred EeeccCc----------ccc---cCEEE-EEeCCCeEEEEECC--C--CeEEEEeecCCCCEEEEEEeCCCCEEEEEE
Q psy2685 240 TFRREQE----------RFW---SEVIV-SNAEDKSIRLWDMT--K--RTCLNTFRREQERFWVLVAHPTLNLFAAGH 299 (992)
Q Consensus 240 ~~~~~~~----------~~~---s~~l~-sgs~Dg~I~vwd~~--t--~~~v~~l~~h~~~V~~la~spdg~~Lasgs 299 (992)
....... ..+ +..++ ++..++.|.+||+. + .+.+..+..+.. +..++|+|+|++|++++
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence 2221111 112 24555 55689999999998 3 344555554444 88899999999888776
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=3.4e-18 Score=211.30 Aligned_cols=260 Identities=8% Similarity=0.085 Sum_probs=190.6
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-----Ce
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ-----RK 84 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t-----~~ 84 (992)
..|.+++|||| ..++.+. ++.|.+||+.+++.... ..+.+.+.+++|||||+.|+++ .++.|.+||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666664 69999999998876544 4567788999999999999985 679999999998 77
Q ss_pred EEEEEccCCCC--------------EEEEEEecCCCEEEEEE---------------------------------CCCeE
Q psy2685 85 CIFTLLGHLDY--------------IRTTFFHHEYPWILSAS---------------------------------DDQTI 117 (992)
Q Consensus 85 ~~~~l~~h~~~--------------V~~i~fspd~~~L~sgs---------------------------------~Dg~I 117 (992)
.......+... +.++.|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 65544444333 47899999999999987 45789
Q ss_pred EEEECCCCeeEEEEe--cCCCCeEEEEEecCCCEEEEEECCC-----eEEEEECCCCccccccCCcccCCCeEEEEEccC
Q psy2685 118 RIWNWQSRNCICVLT--GHNHYVMCAQFHPTDDIVVSASLDQ-----TIRVWDISGLRKKNVAPGMGADDRQIKLWRMND 190 (992)
Q Consensus 118 ~vwdl~t~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~ 190 (992)
.+||+.+++...... .|...+.+++|+|||+.+++++.++ .|.+||..+.. .+.
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-------------~~~------ 298 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-------------FVR------ 298 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-------------EEE------
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-------------eee------
Confidence 999999888655442 4677899999999999999988775 77777776531 000
Q ss_pred CcceEEEEEeccC---CCeEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeeeeEeeccCccc-----c---cCEE-EE
Q psy2685 191 SKAWEVDIFRGHY---NNVSCVLFHP--KSEVIVSNAEDKSIRLWDMT-KRTCLNTFRREQERF-----W---SEVI-VS 255 (992)
Q Consensus 191 ~~~~~i~~l~~h~---~~V~~v~fsp--dg~~L~s~s~Dg~I~vwdl~-~~~~l~~~~~~~~~~-----~---s~~l-~s 255 (992)
.+. ...+. ..+.++.|+| +|+++++++.|+.+++|++. ++..+..+..+.... + +..+ ++
T Consensus 299 ----~~~-~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 299 ----TLF-VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp ----EEE-EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE
T ss_pred ----EEE-EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE
Confidence 111 11122 2246789999 99999999999999999876 566666665443221 2 2444 44
Q ss_pred EeCCC----eEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEE
Q psy2685 256 NAEDK----SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGH 299 (992)
Q Consensus 256 gs~Dg----~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgs 299 (992)
++.++ .|..||..+++ ...+. +...+.+++|+|+|+.++.+.
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEE
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEe
Confidence 55554 67778887765 33333 566799999999999887653
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=3.4e-19 Score=220.72 Aligned_cols=324 Identities=12% Similarity=0.077 Sum_probs=208.6
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCC---CEEEEEEecCCCEEEEEECC---------CeEEEE
Q psy2685 53 PVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD---YIRTTFFHHEYPWILSASDD---------QTIRIW 120 (992)
Q Consensus 53 ~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~i~fspd~~~L~sgs~D---------g~I~vw 120 (992)
.+.+++|+|+|+++++ +.||+|++||..+++....+..|.. .|.+++|||||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999988877877765 49999999999999999875 788899
Q ss_pred ECCCCeeEEEEe---cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 121 NWQSRNCICVLT---GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 121 dl~t~~~i~~l~---~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
|+.+++. ..+. +|...+.+++|+|||+.|++++. +.|++||..+..... +....... .
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~-------------~~~~~~~~--~-- 157 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR-------------VVSTGKEG--V-- 157 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE-------------EECCCBTT--T--
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE-------------EecCCCCC--c--
Confidence 9998876 3333 34445889999999999999886 789999987643211 10000000 0
Q ss_pred EEeccC---------CCeEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCC
Q psy2685 198 IFRGHY---------NNVSCVLFHPKSEVIVSNAEDK----------------------------------SIRLWDMTK 234 (992)
Q Consensus 198 ~l~~h~---------~~V~~v~fspdg~~L~s~s~Dg----------------------------------~I~vwdl~~ 234 (992)
.+.++. +.+.++.|+|||+.|++++.|+ .|.+||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 001111 1347899999999999887653 799999998
Q ss_pred CeeeeEeecc------Ccc----cc---cCEEEEEeC----CCeEEEEECCCCeEEEEeec-CCCCE----EEEEEeCCC
Q psy2685 235 RTCLNTFRRE------QER----FW---SEVIVSNAE----DKSIRLWDMTKRTCLNTFRR-EQERF----WVLVAHPTL 292 (992)
Q Consensus 235 ~~~l~~~~~~------~~~----~~---s~~l~sgs~----Dg~I~vwd~~t~~~v~~l~~-h~~~V----~~la~spdg 292 (992)
++....+..+ ... .| +..+++.+. +..|.+||+.++++...+.. +...+ ..++|+|||
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS
T ss_pred CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC
Confidence 8765555433 111 12 245555532 35799999999987666543 33333 378999999
Q ss_pred CEEEEE--ECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEE-eeCCCceEEEEeecCCCcccee-EEEccCCCEEEE
Q psy2685 293 NLFAAG--HDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLD-LTNSKDSVVMQLRGGGRIPAHS-ISYNATEHSILV 368 (992)
Q Consensus 293 ~~Lasg--sddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~d-l~~~~~~~v~~l~~~~~~~I~~-lafspdg~~lav 368 (992)
+.|+.. ..++.. .....+.+|| ..++.......+..+ ...+.. ++|+|||+.|+.
T Consensus 318 ~~l~~~~~~~~~~~--------------------~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 318 RKFFFIRAIPQGGR--------------------GKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp CSEEEEEEECCSSS--------------------SCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEE
T ss_pred CeEEEEEecccCCC--------------------cceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEE
Confidence 977653 333300 0001233455 222220001122212 233343 699999999987
Q ss_pred EecCCccccCCeEEEEEeCCCccccceeccC---ccccceEEEEecCCeEEEEEc
Q psy2685 369 TTRNANNFENSTYDLYMIPKEESERKEVADG---KRSTGISAVWVARNRFAVLDR 420 (992)
Q Consensus 369 ~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~---~~~~~~s~~w~~~~~~av~~~ 420 (992)
.+.. ...+.+++|.+............. ..+....+.|+++++.++...
T Consensus 377 ~~~~---~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 377 LSTE---DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EESS---SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEcC---CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 7643 122688999987543211112221 244566789999887766543
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=2.6e-17 Score=184.13 Aligned_cols=265 Identities=7% Similarity=0.017 Sum_probs=195.9
Q ss_pred CCCCEEEEEEecCCCEEEEEEC-------CCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEE
Q psy2685 50 HEGPVRGICFHNQQPIFVSGGD-------DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA-SDDQTIRIWN 121 (992)
Q Consensus 50 h~~~V~~l~fspdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sg-s~Dg~I~vwd 121 (992)
....+..++|+|+++.+++++. ++.|.+||..+++....+... ..+..++|+|+++.++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999998888774 568999999999988877643 447789999999965554 5579999999
Q ss_pred CCCCeeEEEEecCCCC---------eEEEEEecCCCEEEEEE--CCCeEEEEECCCCccccccCCcccCCCeEEEEEccC
Q psy2685 122 WQSRNCICVLTGHNHY---------VMCAQFHPTDDIVVSAS--LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMND 190 (992)
Q Consensus 122 l~t~~~i~~l~~h~~~---------V~sl~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~ 190 (992)
..+++.+..+..+... +.+++|+|+++.+++++ .++.|.+||..+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~---------------------- 175 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK---------------------- 175 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE----------------------
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc----------------------
Confidence 9999988888765432 78999999999877776 47888888886532
Q ss_pred CcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCc----c----cc---cCEEEE-EeC
Q psy2685 191 SKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE----R----FW---SEVIVS-NAE 258 (992)
Q Consensus 191 ~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~----~----~~---s~~l~s-gs~ 258 (992)
....+..+...+.++.|+|+++.+++++.++.|.+||..+++.+..+..... . .+ +..+++ ...
T Consensus 176 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 176 ----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp ----EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred ----eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 2333443455678899999999999999999999999999988877764221 1 11 354444 455
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCC
Q psy2685 259 DKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNS 338 (992)
Q Consensus 259 Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~ 338 (992)
++.|.+||..+++.+..+..... ..++|+|+|+.+.+++. .++.+.+||..++
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~-------------------------~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHR-------------------------QAGKVSVIDAKSY 304 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEET-------------------------TTTEEEEEETTTT
T ss_pred CCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEEC-------------------------CCCeEEEEECCCC
Confidence 69999999999998887765432 56899999996655442 1233445666555
Q ss_pred CceEEEEeecCCCccceeEEEccCCCEEEEEecC
Q psy2685 339 KDSVVMQLRGGGRIPAHSISYNATEHSILVTTRN 372 (992)
Q Consensus 339 ~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~ 372 (992)
+....... ...+..++|+|||+.+.++...
T Consensus 305 ~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 305 KVVKTFDT----PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEEEC----CSEEEEEEECTTSCEEEEEEEC
T ss_pred eEEEEEec----CCCCCeEEEcCCCCEEEEEEcc
Confidence 43333222 2367899999999988877654
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=1.4e-17 Score=184.57 Aligned_cols=252 Identities=5% Similarity=-0.032 Sum_probs=195.6
Q ss_pred CEEEEEEcCCeEEEEEcCCCeEEEEeccCCC--CEEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEcc-C----C
Q psy2685 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEG--PVRGICFHNQQPIFV-SGGDDYKIKVWNYKQRKCIFTLLG-H----L 93 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~--~V~~l~fspdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~-h----~ 93 (992)
+++++++.++.|.+||..+++.+..+..... .+.+++|+|+|+.++ +++.++.|.+||..+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788999999999999999998888763322 578999999998665 455678999999999988876653 2 1
Q ss_pred CCEEEEEEecCCCEEEEEE------------CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 94 DYIRTTFFHHEYPWILSAS------------DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 94 ~~V~~i~fspd~~~L~sgs------------~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
..+.+++|+|+++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567899999999998886 579999999999988877764 4567889999999988887 688999
Q ss_pred EECCCCccccccCC------------------cccCCC-----------------------eEEEEEccCCcceEEEEEe
Q psy2685 162 WDISGLRKKNVAPG------------------MGADDR-----------------------QIKLWRMNDSKAWEVDIFR 200 (992)
Q Consensus 162 wd~~~~~~~~~~~~------------------~~~~d~-----------------------~I~iwd~~~~~~~~i~~l~ 200 (992)
||+.+.+....... .+..++ .+.+||..+.+.. ...+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC
Confidence 99987654321110 111111 4789999887753 44556
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCccc---c---cCEEEEEeCCCeEEEEECCCCeEEE
Q psy2685 201 GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF---W---SEVIVSNAEDKSIRLWDMTKRTCLN 274 (992)
Q Consensus 201 ~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~---~---s~~l~sgs~Dg~I~vwd~~t~~~v~ 274 (992)
.+...+.++.|+|++++++++ ++.|.+||+.+++.+..+....... + +..+++++.++.|.+||+.+++.+.
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 677788999999999999888 7999999999998887776433221 1 3678888889999999999999888
Q ss_pred EeecC
Q psy2685 275 TFRRE 279 (992)
Q Consensus 275 ~l~~h 279 (992)
.+..+
T Consensus 316 ~~~~~ 320 (337)
T 1pby_B 316 QVDLP 320 (337)
T ss_dssp EEECG
T ss_pred EEEcC
Confidence 87644
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=3.7e-17 Score=181.66 Aligned_cols=264 Identities=9% Similarity=0.127 Sum_probs=181.7
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcC-CeEEEEEcC--CCe--EEEEeccCCCCEEEEEEecCCCEEEEEEC-CCeEEEEEc
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHN-GVIQLWDYR--MNT--LLEKFDEHEGPVRGICFHNQQPIFVSGGD-DYKIKVWNY 80 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~d-g~I~IWd~~--~g~--~~~~~~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~VWd~ 80 (992)
.|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++|+|+|+++++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 467789999999999999998876 999999987 555 344554444 7889999999998877665 889999999
Q ss_pred C---CCeEEEEEccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEECCC-CeeEE----EEec-CCCCeEEEEEecCCCEE
Q psy2685 81 K---QRKCIFTLLGHLDYIRTTFFHHEYPWILSAS-DDQTIRIWNWQS-RNCIC----VLTG-HNHYVMCAQFHPTDDIV 150 (992)
Q Consensus 81 ~---t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs-~Dg~I~vwdl~t-~~~i~----~l~~-h~~~V~sl~fspdg~~L 150 (992)
. +++....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++... .... ....+.+++|+|+++++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 4 34444555443 4588999999999888887 899999999987 64432 2232 34578899999999977
Q ss_pred EEEE-CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe-c--cCCCeEEEEEcCCCCEEE-EEeCCC
Q psy2685 151 VSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-G--HYNNVSCVLFHPKSEVIV-SNAEDK 225 (992)
Q Consensus 151 ~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-~--h~~~V~~v~fspdg~~L~-s~s~Dg 225 (992)
++++ .++.|.+|++.... +.+.... ....+. + ....+.+++|+|++++|+ +++.++
T Consensus 193 ~~~~~~~~~i~~~~~~~~~------------g~~~~~~-------~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPH------------GNIECVQ-------TLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp EEEETTTTEEEEEESSCTT------------SCCEEEE-------EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEEeCCCCEEEEEEecCCC------------CcEEEEe-------eccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 6555 78999999985321 1111000 011111 1 123577899999998777 455799
Q ss_pred eEEEEECC--C--CeeeeEeeccCcc---cc---cCEEEEEe-CCCeEEEE--ECCCCeE--EEEeecCCCCEEEEEEeC
Q psy2685 226 SIRLWDMT--K--RTCLNTFRREQER---FW---SEVIVSNA-EDKSIRLW--DMTKRTC--LNTFRREQERFWVLVAHP 290 (992)
Q Consensus 226 ~I~vwdl~--~--~~~l~~~~~~~~~---~~---s~~l~sgs-~Dg~I~vw--d~~t~~~--v~~l~~h~~~V~~la~sp 290 (992)
.|.+||+. + .+.+..+...... .+ +..+++++ .++.|.+| |..+++. +..+... ....+++|+|
T Consensus 254 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 254 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred EEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEc
Confidence 99999998 2 3444444433321 12 36666666 68999999 5556643 4444432 3455667776
Q ss_pred CC
Q psy2685 291 TL 292 (992)
Q Consensus 291 dg 292 (992)
+.
T Consensus 333 ~~ 334 (343)
T 1ri6_A 333 HE 334 (343)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=2.2e-16 Score=177.15 Aligned_cols=277 Identities=11% Similarity=0.078 Sum_probs=178.5
Q ss_pred EEEEEEc----CCeEEEEEc--CCCeEEE-EeccCCCCEEEEEEecCCCEEEEEEC---CCeEEEEEcCCCe--EEEEEc
Q psy2685 23 WILSSLH----NGVIQLWDY--RMNTLLE-KFDEHEGPVRGICFHNQQPIFVSGGD---DYKIKVWNYKQRK--CIFTLL 90 (992)
Q Consensus 23 ~Lasg~~----dg~I~IWd~--~~g~~~~-~~~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~VWd~~t~~--~~~~l~ 90 (992)
.+++|+. ++.|.+|++ .+++... ....+...+..++|+|+|+ +++++. ++.|.+||+.+++ .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 3555532 456777765 4565433 2334556778899999999 555544 6899999998776 344445
Q ss_pred cCCCCEEEEEEecCCCEEEEEE-CCCeEEEEECCC-C--eeEEEEec---------CCCCeEEEEEecCCCEEEEEECCC
Q psy2685 91 GHLDYIRTTFFHHEYPWILSAS-DDQTIRIWNWQS-R--NCICVLTG---------HNHYVMCAQFHPTDDIVVSASLDQ 157 (992)
Q Consensus 91 ~h~~~V~~i~fspd~~~L~sgs-~Dg~I~vwdl~t-~--~~i~~l~~---------h~~~V~sl~fspdg~~L~sgs~Dg 157 (992)
.+...+..++|+|++++|++++ .++.|.+|++.. + ..+..+.. +...+.+++|+|+|+++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5777889999999999888888 789999999963 2 23333322 123488999999999666666788
Q ss_pred eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc-CCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCC-
Q psy2685 158 TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH-YNNVSCVLFHPKSEVIVS-NAEDKSIRLWDMTK- 234 (992)
Q Consensus 158 ~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h-~~~V~~v~fspdg~~L~s-~s~Dg~I~vwdl~~- 234 (992)
.|.+|++... +.+. .......+ ...+..++|+|+|+++++ +..++.|.+|++..
T Consensus 163 ~v~~~~~~~~-------------g~~~----------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 163 KVYVYNVSDA-------------GQLS----------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEEEEEECTT-------------SCEE----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEEECCC-------------CcEE----------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 8999998721 1111 11122222 235778999999996655 56688999998653
Q ss_pred -CeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecC------CCCEEEEEEeCCCCEEEE-EECCCEEEE
Q psy2685 235 -RTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE------QERFWVLVAHPTLNLFAA-GHDAGMVVF 306 (992)
Q Consensus 235 -~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h------~~~V~~la~spdg~~Las-gsddgiivw 306 (992)
++.. .+..+... ...+..++|+|+|++|++ +..+
T Consensus 220 ~g~~~---------------------------------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----- 261 (347)
T 3hfq_A 220 TGAFT---------------------------------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----- 261 (347)
T ss_dssp TTEEE---------------------------------EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-----
T ss_pred CCceE---------------------------------EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-----
Confidence 2211 01111111 135788999999997754 3322
Q ss_pred EecCCcceEEeeccEEEEEeCCeEEEEEeeC-CCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEE
Q psy2685 307 KFERERPAYTVHNNVMYYVKERFLHRLDLTN-SKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 385 (992)
Q Consensus 307 ~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~-~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~ 385 (992)
+.+.+|++.. +....+..+. .+...+..++|+|||++|++++.+ ++.+.+|.
T Consensus 262 ---------------------~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~~ 314 (347)
T 3hfq_A 262 ---------------------NTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQN-----TDNATLYA 314 (347)
T ss_dssp ---------------------TEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETT-----TTEEEEEE
T ss_pred ---------------------CEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcC-----CCcEEEEE
Confidence 2334455532 1222222222 224457899999999999988743 57899998
Q ss_pred eCC
Q psy2685 386 IPK 388 (992)
Q Consensus 386 l~~ 388 (992)
+..
T Consensus 315 ~d~ 317 (347)
T 3hfq_A 315 RDL 317 (347)
T ss_dssp ECT
T ss_pred EeC
Confidence 754
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=7.8e-17 Score=179.06 Aligned_cols=243 Identities=6% Similarity=0.076 Sum_probs=175.2
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCeE-EEEeccCCCCEEEEEEecCCCEEEEEECCC---eEEEE
Q psy2685 4 KFETKSARVKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTL-LEKFDEHEGPVRGICFHNQQPIFVSGGDDY---KIKVW 78 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Lasg~~-dg~I~IWd~~~g~~-~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg---~I~VW 78 (992)
.+..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|+|++++++..++ .|.+|
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 445555667 9999999997777766 88999999999887 777777777766699999999998655553 89999
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEecCCCEEE-EEECCCe-EEEEECCCCeeE----EEEecCCCCeEEEEEecCCCEEEE
Q psy2685 79 NYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQT-IRIWNWQSRNCI----CVLTGHNHYVMCAQFHPTDDIVVS 152 (992)
Q Consensus 79 d~~t~~~~~~l~~h~~~V~~i~fspd~~~L~-sgs~Dg~-I~vwdl~t~~~i----~~l~~h~~~V~sl~fspdg~~L~s 152 (992)
|..+++.+..+..+ ....+++|+|++++++ ++..++. |.+|++.....+ .........+.+++|+|+|+++++
T Consensus 114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 99999988877654 4568999999998555 4456688 999998764332 122234566899999999986655
Q ss_pred E-ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy2685 153 A-SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLW 230 (992)
Q Consensus 153 g-s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vw 230 (992)
+ ..++.|.+||+.+.+.. ..+..+.. ...+..++|+|+|+++++++ .++.|.+|
T Consensus 193 ~~~~~~~v~v~d~~~~~~~-----------------------~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~ 248 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENI-----------------------TLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNF 248 (331)
T ss_dssp EETTTTEEEEEECSSTTSC-----------------------EEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred EeCCCCeEEEEECCCCccc-----------------------ceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence 4 46888999998754310 01333332 35677899999999776554 57889999
Q ss_pred ECCCCee--eeEeecc----Ccc-------cc---cCEE-EEEeCCCeEEEEECCCCeE
Q psy2685 231 DMTKRTC--LNTFRRE----QER-------FW---SEVI-VSNAEDKSIRLWDMTKRTC 272 (992)
Q Consensus 231 dl~~~~~--l~~~~~~----~~~-------~~---s~~l-~sgs~Dg~I~vwd~~t~~~ 272 (992)
|..+++. +..+... ... .+ +..+ +++..++.|.+||+.+...
T Consensus 249 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 249 NQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 9999876 4443322 111 11 2555 4555677999999987653
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=3.9e-18 Score=211.38 Aligned_cols=346 Identities=9% Similarity=-0.004 Sum_probs=218.1
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCC---CEEEEEEecCCCEEEEEEC---------CCeEEEEEc
Q psy2685 13 KGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEG---PVRGICFHNQQPIFVSGGD---------DYKIKVWNY 80 (992)
Q Consensus 13 ~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~---~V~~l~fspdg~~Lasgs~---------Dg~I~VWd~ 80 (992)
.+++|+|++.++++ +.|+.|++||..+++....+..|.. .+.+++|||||++|++++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 37899999965554 4699999999999988777765543 4899999999999998876 789999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE-ecCCCCe-----------------EEEE
Q psy2685 81 KQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL-TGHNHYV-----------------MCAQ 142 (992)
Q Consensus 81 ~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l-~~h~~~V-----------------~sl~ 142 (992)
.+++.+.. ......+..++|||||+.|++++ ++.|++||+.+++..... .++...| .+++
T Consensus 98 ~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 99876210 11235688899999999999886 679999999888765432 2332222 4899
Q ss_pred EecCCCEEEEEECC-CeEEEEECCCCccc-------cccCCcc--cCCCeEEEEEccCCcce---EE---EEEeccCCCe
Q psy2685 143 FHPTDDIVVSASLD-QTIRVWDISGLRKK-------NVAPGMG--ADDRQIKLWRMNDSKAW---EV---DIFRGHYNNV 206 (992)
Q Consensus 143 fspdg~~L~sgs~D-g~I~iwd~~~~~~~-------~~~~~~~--~~d~~I~iwd~~~~~~~---~i---~~l~~h~~~V 206 (992)
|+|||+.|++++.| +.+.+|.+...... ...+..+ .....+.+||+.++... .+ ..+.+|...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 99999999998865 44444433110000 0001111 22347888988876531 11 1134678889
Q ss_pred EEEEEcCCCCEEEEEeCC----CeEEEEE----CCCCeeeeEe----eccCc---------ccc---cCEE-E-EEeCCC
Q psy2685 207 SCVLFHPKSEVIVSNAED----KSIRLWD----MTKRTCLNTF----RREQE---------RFW---SEVI-V-SNAEDK 260 (992)
Q Consensus 207 ~~v~fspdg~~L~s~s~D----g~I~vwd----l~~~~~l~~~----~~~~~---------~~~---s~~l-~-sgs~Dg 260 (992)
.+++|+||++++++.... ..|.+|| ..++++...+ ..+.. ..+ +..+ + ++..+|
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 999999998877774432 2488899 7777655444 22221 223 2333 3 344555
Q ss_pred --eEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeC-
Q psy2685 261 --SIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTN- 337 (992)
Q Consensus 261 --~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~- 337 (992)
.|.+||+.+++ ...+..+...+..+.++ +++.|+..+.++ . ......++|.+..
T Consensus 336 ~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~------~---------------~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 336 YKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEF------E---------------EYPGRRNIYRISIG 392 (719)
T ss_dssp CEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCG------G---------------GCTTCBEEEEEECS
T ss_pred ceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecC------C---------------CCCceEEEEEEeCC
Confidence 57777877766 44555555667777777 777666554320 0 0011223344332
Q ss_pred -CCceEEEEeec---CCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 338 -SKDSVVMQLRG---GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 338 -~~~~~v~~l~~---~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
+... ...+.. ++...+..++|+|+|+.++..+.+ .....+.+|++..
T Consensus 393 ~g~~~-~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~---~~~p~~~l~d~~~ 443 (719)
T 1z68_A 393 SYPPS-KKCVTCHLRKERCQYYTASFSDYAKYYALVCYG---PGIPISTLHDGRT 443 (719)
T ss_dssp SSSCC-EEESSTTTTTTTBCBEEEEECGGGSSEEEEECC---BSSCEEEEECSSS
T ss_pred CCCCC-ceeccCccCCCCCceEEEEECCCCCEEEEEcCC---CCCCeEEEEECCC
Confidence 2111 112211 134567789999999988876544 2223566676543
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=2e-17 Score=199.98 Aligned_cols=253 Identities=8% Similarity=0.019 Sum_probs=186.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCeEEEEeccCC-CCEEEEEEecCCCEEEEEEC---CCeEEEEEcCC-
Q psy2685 9 SARVKGLSFHPKRPWILSSLH-NGVIQLWDYRMNTLLEKFDEHE-GPVRGICFHNQQPIFVSGGD---DYKIKVWNYKQ- 82 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~-dg~I~IWd~~~g~~~~~~~~h~-~~V~~l~fspdg~~Lasgs~---Dg~I~VWd~~t- 82 (992)
..+|.+++|+|||++||+++. +|++.||++.+++.. .+..|. ..+.+++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 999999998776554 444555 68999999999 77777765 45566665432
Q ss_pred --CeEEEEEccCCCCEEEEEEecCCCE-EEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECC---
Q psy2685 83 --RKCIFTLLGHLDYIRTTFFHHEYPW-ILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD--- 156 (992)
Q Consensus 83 --~~~~~~l~~h~~~V~~i~fspd~~~-L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D--- 156 (992)
+... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||+++++++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 2222 33333 23456789998863 3344444555699999988766555433 789999999999988877
Q ss_pred -CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECC
Q psy2685 157 -QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDK--SIRLWDMT 233 (992)
Q Consensus 157 -g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg--~I~vwdl~ 233 (992)
+.|++||+.+.. ...+..|.+.+.+++|||||+.|++++.++ .|++||+.
T Consensus 174 ~~~i~~~d~~~g~---------------------------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 174 RVSLFTSNLSSGG---------------------------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp EEEEEEEETTTCC---------------------------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEcCCCCC---------------------------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence 667777765432 234677888899999999999999888888 89999999
Q ss_pred CCeeeeEeeccCc----cc--------c---cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEE
Q psy2685 234 KRTCLNTFRREQE----RF--------W---SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAG 298 (992)
Q Consensus 234 ~~~~l~~~~~~~~----~~--------~---s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasg 298 (992)
+++.. .+..+.. .. + +.++++++.++.+++|++ ++... ...+.+.+++|+ ++++++++
T Consensus 227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 227 DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSH 299 (582)
T ss_dssp TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEE
T ss_pred CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEE
Confidence 98776 5544432 12 3 268889999999999999 66544 344678899999 99988877
Q ss_pred ECCC
Q psy2685 299 HDAG 302 (992)
Q Consensus 299 sddg 302 (992)
+.+.
T Consensus 300 s~~~ 303 (582)
T 3o4h_A 300 TSLS 303 (582)
T ss_dssp EETT
T ss_pred cCCC
Confidence 6554
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=1.9e-18 Score=201.37 Aligned_cols=199 Identities=12% Similarity=0.097 Sum_probs=157.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCC-----------CeEE-----EEeccCCCCEEEEEEecCCCEEE----
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRM-----------NTLL-----EKFDEHEGPVRGICFHNQQPIFV---- 67 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~-----------g~~~-----~~~~~h~~~V~~l~fspdg~~La---- 67 (992)
+...++.+++++++.++++++.+| +.+|+... .... ..+ .+.+.|.+++|+|+|++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEe
Confidence 344688999999999999999887 88887431 1111 112 3567899999999999999
Q ss_pred EEECCCeEEEEEcCCC--------e---EEEEEccCCCCEEEEEEecC-CCEEEEEECCCeEEEEECCCCeeEEEEecCC
Q psy2685 68 SGGDDYKIKVWNYKQR--------K---CIFTLLGHLDYIRTTFFHHE-YPWILSASDDQTIRIWNWQSRNCICVLTGHN 135 (992)
Q Consensus 68 sgs~Dg~I~VWd~~t~--------~---~~~~l~~h~~~V~~i~fspd-~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~ 135 (992)
+|+.|+.|+|||+.++ + ....+.+|.+.|.+++|+|+ +.+|++++.||+|++||++++.......+|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 7888999999998654 2 24556679999999999998 7899999999999999999998877778899
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe-------ccCCCeEE
Q psy2685 136 HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-------GHYNNVSC 208 (992)
Q Consensus 136 ~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-------~h~~~V~~ 208 (992)
..|.+++|+|+|++|++|+.||+|++||.++.. ...+. .|...|.+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~---------------------------~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQE---------------------------KKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTTCCE---------------------------EEEECCCTTCCTTSCEEEEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccCCcc---------------------------cccccCCcccCCCCceeEEE
Confidence 999999999999999999999999999987311 11111 23447999
Q ss_pred EEEcCCCCEEEEEe-CCC------eEEEEECCCC
Q psy2685 209 VLFHPKSEVIVSNA-EDK------SIRLWDMTKR 235 (992)
Q Consensus 209 v~fspdg~~L~s~s-~Dg------~I~vwdl~~~ 235 (992)
+.|++++.++++.+ .|| .+++|++...
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999888775533 443 3889988753
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=1.4e-16 Score=177.74 Aligned_cols=259 Identities=7% Similarity=0.012 Sum_probs=189.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCC-CCEEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEcc
Q psy2685 14 GLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHE-GPVRGICFHNQQPIFV-SGGDDYKIKVWNYKQRKCIFTLLG 91 (992)
Q Consensus 14 ~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~-~~V~~l~fspdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~ 91 (992)
++++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|+|+.++ ++..++.|.+||..+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 56788899999999999999999999999888886543 2578899999998665 455689999999999998877753
Q ss_pred CC------CCEEEEEEecCCCEEEEEECC------------CeEEEEECCCCe---eEEEEecCCCCeEEEEEecCCCEE
Q psy2685 92 HL------DYIRTTFFHHEYPWILSASDD------------QTIRIWNWQSRN---CICVLTGHNHYVMCAQFHPTDDIV 150 (992)
Q Consensus 92 h~------~~V~~i~fspd~~~L~sgs~D------------g~I~vwdl~t~~---~i~~l~~h~~~V~sl~fspdg~~L 150 (992)
+. ..+..++|+|+++++++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|+++ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 32 237789999999999998865 899999998743 334444 344688999999999 5
Q ss_pred EEEECCCeEEEEECCCCccccccCCcc------------------cC-------------------------CCeEEEEE
Q psy2685 151 VSASLDQTIRVWDISGLRKKNVAPGMG------------------AD-------------------------DRQIKLWR 187 (992)
Q Consensus 151 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------------~~-------------------------d~~I~iwd 187 (992)
++++. .|.+||..+.+.....+... .. ...+..++
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 55543 49999997765433221100 00 00111144
Q ss_pred ccCCcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCccc---c---cCEEEEEeCCC
Q psy2685 188 MNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF---W---SEVIVSNAEDK 260 (992)
Q Consensus 188 ~~~~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~---~---s~~l~sgs~Dg 260 (992)
..++.. ....+..+...+.+++|+| ++++++++ ++.|.+||+.+++.+..+....... + +..+++++.++
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 240 LKTGKT-HTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp TTTCCE-EEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred ccCCcE-EecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCC
Confidence 444442 2333344566788999999 99999888 8899999999998887776433221 1 35677788899
Q ss_pred eEEEEECCCCeEEEEeecC
Q psy2685 261 SIRLWDMTKRTCLNTFRRE 279 (992)
Q Consensus 261 ~I~vwd~~t~~~v~~l~~h 279 (992)
.|.+||..+++.+..+..+
T Consensus 317 ~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 317 DLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTTEEEEEEECS
T ss_pred eEEEEeccccceeeeeecC
Confidence 9999999999988887644
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=3.6e-16 Score=175.39 Aligned_cols=248 Identities=13% Similarity=0.103 Sum_probs=169.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEEcCCCe--EEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEE
Q psy2685 6 ETKSARVKGLSFHPKRPWILSSLH---NGVIQLWDYRMNT--LLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWN 79 (992)
Q Consensus 6 ~~H~~~V~~iafspdg~~Lasg~~---dg~I~IWd~~~g~--~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd 79 (992)
..+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+..+...+..++|+|+|++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34556788899999999 665554 5899999998776 4445455777889999999999888887 689999999
Q ss_pred cC-CC--eEEEEEcc---------CCCCEEEEEEecCCCEEEEEECCCeEEEEECC-CCeeEE--EEecC-CCCeEEEEE
Q psy2685 80 YK-QR--KCIFTLLG---------HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ-SRNCIC--VLTGH-NHYVMCAQF 143 (992)
Q Consensus 80 ~~-t~--~~~~~l~~---------h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~-t~~~i~--~l~~h-~~~V~sl~f 143 (992)
+. ++ +.+..+.. +...+.+++|+|+++++++...++.|.+|++. +++... .+..+ ...+..++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 95 33 23333321 12348899999999966666678899999998 454322 22322 336788999
Q ss_pred ecCCCEEEE-EECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC------CCeEEEEEcCCCC
Q psy2685 144 HPTDDIVVS-ASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY------NNVSCVLFHPKSE 216 (992)
Q Consensus 144 spdg~~L~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~------~~V~~v~fspdg~ 216 (992)
+|+|+++++ +..++.|.+|++.... +.+. ....+.... ..+..++|+|+|+
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~------------g~~~----------~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQT------------GAFT----------QLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTT------------TEEE----------EEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCC------------CceE----------EeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 999996655 5567889999876411 1111 112222211 3478899999999
Q ss_pred EE-EEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEE
Q psy2685 217 VI-VSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLF 295 (992)
Q Consensus 217 ~L-~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~L 295 (992)
+| ++...++.|.+|++.... +.+.+..+..+...+..++|+|+|++|
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADG--------------------------------HLTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGG--------------------------------CEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred EEEEEeCCCCEEEEEEECCCC--------------------------------cEEEeEEEecCCCCcCeEEECCCCCEE
Confidence 77 555668899999875210 012233444445567789999999988
Q ss_pred EEEECC--CEEEEEe
Q psy2685 296 AAGHDA--GMVVFKF 308 (992)
Q Consensus 296 asgsdd--giivw~l 308 (992)
++++.+ .+.+|++
T Consensus 301 ~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 301 VVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEEcCCCcEEEEEE
Confidence 877643 3446644
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=5.1e-16 Score=171.98 Aligned_cols=260 Identities=7% Similarity=0.048 Sum_probs=184.2
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEEccCCC--CEEEEEEecCCCEEE-EEECCCeEEEEECCCCeeEEEEec-C----C
Q psy2685 64 PIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD--YIRTTFFHHEYPWIL-SASDDQTIRIWNWQSRNCICVLTG-H----N 135 (992)
Q Consensus 64 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~--~V~~i~fspd~~~L~-sgs~Dg~I~vwdl~t~~~i~~l~~-h----~ 135 (992)
+++++++.++.|.+||..+++.+..+..... .+..++|+|+++.++ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788999999999999999998887753322 478899999998665 555678999999999988877663 2 1
Q ss_pred CCeEEEEEecCCCEEEEEE------------CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC
Q psy2685 136 HYVMCAQFHPTDDIVVSAS------------LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203 (992)
Q Consensus 136 ~~V~sl~fspdg~~L~sgs------------~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~ 203 (992)
..+.+++|+|+++.+++++ .++.|.+||+.+.+ ....+.. .
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------------------------~~~~~~~-~ 134 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------------------------RRKAFEA-P 134 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------------------------EEEEEEC-C
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc--------------------------EEEEEeC-C
Confidence 2577899999999888886 56788888876432 2222222 3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccC--cc-cc---cCEE-EEEeCCC----------------
Q psy2685 204 NNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ--ER-FW---SEVI-VSNAEDK---------------- 260 (992)
Q Consensus 204 ~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~--~~-~~---s~~l-~sgs~Dg---------------- 260 (992)
..+.++.|+|++++|+++ ++.|.+||+.+++....+.... .. .+ +..+ +++..++
T Consensus 135 ~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 135 RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 457788999999988877 6899999999998877765433 11 11 1212 2221222
Q ss_pred -------eEEEEECCCCeEE-EEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEE
Q psy2685 261 -------SIRLWDMTKRTCL-NTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHR 332 (992)
Q Consensus 261 -------~I~vwd~~t~~~v-~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i 332 (992)
.|.+||..+++.. ..+..+...+.+++|+|++++++++ ++ .+.+
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~---------------------------~v~~ 264 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YN---------------------------VLES 264 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ES---------------------------EEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CC---------------------------eEEE
Confidence 5789999998764 2334566678899999999998876 33 3444
Q ss_pred EEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCc
Q psy2685 333 LDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 333 ~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
||+.+++....... ...+..++|+|+|+++++++. ++.+.+|++....
T Consensus 265 ~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~------~~~i~v~d~~~~~ 312 (337)
T 1pby_B 265 FDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGA------LGDLAAYDAETLE 312 (337)
T ss_dssp EETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESB------SSEEEEEETTTCC
T ss_pred EECCCCcCcceecC----CCceeeEEECCCCCEEEEEcC------CCcEEEEECcCCc
Confidence 66654443322221 245689999999999988743 4899999886543
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.8e-16 Score=180.35 Aligned_cols=269 Identities=9% Similarity=0.058 Sum_probs=189.0
Q ss_pred EEeecCCCCEEE-----EEEcCCCCEEEEEEc-CC--eEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCe
Q psy2685 3 TKFETKSARVKG-----LSFHPKRPWILSSLH-NG--VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK 74 (992)
Q Consensus 3 ~~l~~H~~~V~~-----iafspdg~~Lasg~~-dg--~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~ 74 (992)
..+..|...... .+|||||++|+.++. +| .|.+||..+++.......+...+.+..|+|+|+.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 455666666666 889999999999887 66 4888899999877766666666667789999999999999999
Q ss_pred EEEEEcCCCeEEEEEccCCCCEEEEEE--ecCCCEEEEE----------------------ECCCeEEEEECCCCeeEEE
Q psy2685 75 IKVWNYKQRKCIFTLLGHLDYIRTTFF--HHEYPWILSA----------------------SDDQTIRIWNWQSRNCICV 130 (992)
Q Consensus 75 I~VWd~~t~~~~~~l~~h~~~V~~i~f--spd~~~L~sg----------------------s~Dg~I~vwdl~t~~~i~~ 130 (992)
|.+||+.+++.......+...+....| +|++..++.. +.++.|.+||+.+++...
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~- 182 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV- 182 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-
Confidence 999999999877766666665654444 8999988743 244789999999887544
Q ss_pred EecCCCCeEEEEEec-CCCEEEEEECCC------eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC
Q psy2685 131 LTGHNHYVMCAQFHP-TDDIVVSASLDQ------TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203 (992)
Q Consensus 131 l~~h~~~V~sl~fsp-dg~~L~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~ 203 (992)
+..+...+..+.|+| +|+.++.++.++ .|.++|..+ .. ...+..+.
T Consensus 183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~------------------------~~---~~~l~~~~ 235 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG------------------------TN---MRKVKTHA 235 (388)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS------------------------CC---CEESCCCC
T ss_pred eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC------------------------Cc---eEEeeeCC
Confidence 445677899999999 999888877532 444444433 21 12233333
Q ss_pred --CCeEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCeee--eEeec-------cCccccc---CEEEEE--------
Q psy2685 204 --NNVSCVLFHPKSEVIVSNAE-DK----SIRLWDMTKRTCL--NTFRR-------EQERFWS---EVIVSN-------- 256 (992)
Q Consensus 204 --~~V~~v~fspdg~~L~s~s~-Dg----~I~vwdl~~~~~l--~~~~~-------~~~~~~s---~~l~sg-------- 256 (992)
..+....|+|||+.|+..+. ++ .|.+||+.+++.. ..+.. .....++ ..++..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 24778899999997765443 22 3999999988643 23322 1111222 333322
Q ss_pred -eCCCeEEEEECCCCeEEEEeecCCC-----------CEEEEEEeCCCCEEEEEEC
Q psy2685 257 -AEDKSIRLWDMTKRTCLNTFRREQE-----------RFWVLVAHPTLNLFAAGHD 300 (992)
Q Consensus 257 -s~Dg~I~vwd~~t~~~v~~l~~h~~-----------~V~~la~spdg~~Lasgsd 300 (992)
..+..|++||+.+++.. .+..+.. .+.+++|+|||+.|+.+++
T Consensus 316 ~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp -CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 55779999999988753 4444444 4678899999998887764
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=4.6e-15 Score=167.42 Aligned_cols=294 Identities=9% Similarity=0.025 Sum_probs=184.0
Q ss_pred cCCCCEEEEEEc----CCeEEEEEc--CCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC----CeEEEEEcCC--CeE
Q psy2685 18 HPKRPWILSSLH----NGVIQLWDY--RMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD----YKIKVWNYKQ--RKC 85 (992)
Q Consensus 18 spdg~~Lasg~~----dg~I~IWd~--~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D----g~I~VWd~~t--~~~ 85 (992)
.+...++++|+. ++.|.+|.+ .+++.......+...+..++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 344456777754 568999976 4565433222266778889999999999998875 7999998865 543
Q ss_pred --EEEEccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEECCCCeeEE----EE--ec--------CCCCeEEEEEecCCC
Q psy2685 86 --IFTLLGHLDYIRTTFFHHEYPWILSAS-DDQTIRIWNWQSRNCIC----VL--TG--------HNHYVMCAQFHPTDD 148 (992)
Q Consensus 86 --~~~l~~h~~~V~~i~fspd~~~L~sgs-~Dg~I~vwdl~t~~~i~----~l--~~--------h~~~V~sl~fspdg~ 148 (992)
+.....+......+++ +++++++++ .++.|.+|++.....+. .. .+ +...+.+++|+|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 3334445566778888 778777776 68899999997543221 11 11 123458899999999
Q ss_pred EEEEEE-CCCeEEEEECCCCccccccCCcccCCCe-EEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCC
Q psy2685 149 IVVSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQ-IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDK 225 (992)
Q Consensus 149 ~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~-I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg 225 (992)
++++++ .++.|.+|++........ .. +..- . ........+...+..++|+|+|+++++++ .++
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~--------~~~l~~~----~--~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADN--------KEKFLTK----G--TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTT--------CCCCEEE----E--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred EEEEEeCCCCEEEEEEEcCCCCccc--------ccceeec----c--cccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 766655 478899998764321000 00 0000 0 00111223345578899999999887776 588
Q ss_pred eEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEE
Q psy2685 226 SIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVV 305 (992)
Q Consensus 226 ~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiiv 305 (992)
.|.+||+.++...... .+.....+......++|+|+|++|+++..+
T Consensus 234 ~v~v~~~~~g~~~~~~------------------------------~~~~~~~~~~~~~~i~~spdg~~l~v~~~~---- 279 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQ------------------------------TVAADTVNAQGSGDIHLSPDGKYLYASNRL---- 279 (361)
T ss_dssp EEEEEEEETTEEEEEE------------------------------EEESCSSCCCCEEEEEECTTSSEEEEEECS----
T ss_pred eEEEEEecCCceEEeE------------------------------EEecCCCCCCCcccEEECCCCCEEEEECCC----
Confidence 9999987655321100 011111223456789999999988765542
Q ss_pred EEecCCcceEEeeccEEEEEeCCeEEEEEee--CCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEE
Q psy2685 306 FKFERERPAYTVHNNVMYYVKERFLHRLDLT--NSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDL 383 (992)
Q Consensus 306 w~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~--~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i 383 (992)
.++.+.+|++. +++...+..+.. ...+..++|+|||++|++++.. ++.+.+
T Consensus 280 --------------------~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~-----~~~v~v 332 (361)
T 3scy_A 280 --------------------KADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRD-----TNVIQI 332 (361)
T ss_dssp --------------------SSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETT-----TTEEEE
T ss_pred --------------------CCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECC-----CCCEEE
Confidence 02334445553 233223333322 3467899999999999988742 578999
Q ss_pred EEeCC
Q psy2685 384 YMIPK 388 (992)
Q Consensus 384 ~~l~~ 388 (992)
|.+..
T Consensus 333 ~~~d~ 337 (361)
T 3scy_A 333 FERDQ 337 (361)
T ss_dssp EEECT
T ss_pred EEEEC
Confidence 88764
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=1.2e-16 Score=198.94 Aligned_cols=348 Identities=10% Similarity=0.089 Sum_probs=217.5
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCC-----EEEEEEecCCCEEEEEECC---------CeE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGP-----VRGICFHNQQPIFVSGGDD---------YKI 75 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~-----V~~l~fspdg~~Lasgs~D---------g~I 75 (992)
....+++|+||+.+++++ ||.|++||+.+++....+..|... ...++|||||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 999999999999888777777543 2448899999999998876 567
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE-ecCCCCe----------------
Q psy2685 76 KVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL-TGHNHYV---------------- 138 (992)
Q Consensus 76 ~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l-~~h~~~V---------------- 138 (992)
.+||+.+++.. .+..|.+.+...+|||||+.|+.+. |+.|++||..+++..... .++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 79999998854 4667788899999999999999885 689999999887754422 2232222
Q ss_pred -EEEEEecCCCEEEEEECCCe-EEEEECCCCccc---------cccCCcccC--CCeEEEEEccC---CcceEEEEEe--
Q psy2685 139 -MCAQFHPTDDIVVSASLDQT-IRVWDISGLRKK---------NVAPGMGAD--DRQIKLWRMND---SKAWEVDIFR-- 200 (992)
Q Consensus 139 -~sl~fspdg~~L~sgs~Dg~-I~iwd~~~~~~~---------~~~~~~~~~--d~~I~iwd~~~---~~~~~i~~l~-- 200 (992)
..+.|||||+.|+.++.|.+ +.+|++...... ...+..+.. ..++.+||+.+ +.......+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 35899999999998876655 888876321111 001112222 23688899988 6321222333
Q ss_pred ----ccCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCe----ee--eEe--eccC---------cccc---cCE
Q psy2685 201 ----GHYNNVSCVLFHPKSEVIVSNAE----DKSIRLWDMTKRT----CL--NTF--RREQ---------ERFW---SEV 252 (992)
Q Consensus 201 ----~h~~~V~~v~fspdg~~L~s~s~----Dg~I~vwdl~~~~----~l--~~~--~~~~---------~~~~---s~~ 252 (992)
+|...+..++|+|||+.++.... +..|.+||+.+++ +. ..+ ..+. ...+ +..
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 37788999999999997665533 3479999998876 22 111 1122 2223 244
Q ss_pred EE-EEe-CC--CeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCC
Q psy2685 253 IV-SNA-ED--KSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKER 328 (992)
Q Consensus 253 l~-sgs-~D--g~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~ 328 (992)
++ ..+ .+ ..|++||..++... .+......+..+. +++++.|+..+... . +.+ ...
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~-~~d~~~i~f~~~~~------~-~~~------------~~~ 391 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIE-ALTSDYLYYISNEY------K-GMP------------GGR 391 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEE-EECSSEEEEEESCG------G-GCT------------TCB
T ss_pred EEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEE-EEeCCEEEEEEecC------C-CCC------------cee
Confidence 44 444 33 46888888876544 3333344455433 23455444332210 0 000 001
Q ss_pred eEEEEEeeCCCceEEEEeec---CCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeC
Q psy2685 329 FLHRLDLTNSKDSVVMQLRG---GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 329 ~i~i~dl~~~~~~~v~~l~~---~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
.+...++.++. ....+.. .........+|||+|++++....+. ....+.+++..
T Consensus 392 ~ly~v~~~g~~--~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~---~~p~~~l~~~~ 448 (740)
T 4a5s_A 392 NLYKIQLIDYT--KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGP---GLPLYTLHSSV 448 (740)
T ss_dssp EEEEEETTEEE--EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSB---SSCEEEEEETT
T ss_pred EEEEEECCCCC--cceeeccccCCCCCceEEEEECCCCCEEEEEeCCC---CCCEEEEEECC
Confidence 12222222111 1111211 1235678899999999988777651 23455555543
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=1.4e-15 Score=171.77 Aligned_cols=235 Identities=9% Similarity=0.063 Sum_probs=160.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcC----CeEEEEEcCC--CeE--EEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEE
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHN----GVIQLWDYRM--NTL--LEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVW 78 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~d----g~I~IWd~~~--g~~--~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VW 78 (992)
|...+..++|+|++++|++++.+ +.|.+|++.. ++. +.....+......+++ +++++++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999875 7999998765 543 3344445567778888 788777766 58899999
Q ss_pred EcCCCeEEEE------Ecc--------CCCCEEEEEEecCCCEEEEEE-CCCeEEEEECCCCe-------e------EEE
Q psy2685 79 NYKQRKCIFT------LLG--------HLDYIRTTFFHHEYPWILSAS-DDQTIRIWNWQSRN-------C------ICV 130 (992)
Q Consensus 79 d~~t~~~~~~------l~~--------h~~~V~~i~fspd~~~L~sgs-~Dg~I~vwdl~t~~-------~------i~~ 130 (992)
++.....+.. ..+ +...+.+++|+|+++++++++ .++.|.+|++.... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 111 123468899999999776655 47899999987543 1 122
Q ss_pred EecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEE
Q psy2685 131 LTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCV 209 (992)
Q Consensus 131 l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v 209 (992)
...+...+.+++|+|+|+++++++ .++.|.+||+.+.. +... ........+......+
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~--------------~~~~-------~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM--------------LDEI-------QTVAADTVNAQGSGDI 264 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE--------------EEEE-------EEEESCSSCCCCEEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc--------------eEEe-------EEEecCCCCCCCcccE
Confidence 233456688999999999887777 68899999986421 1110 0111122334557899
Q ss_pred EEcCCCCEEEEEeCC--CeEEEEECC--CCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEE
Q psy2685 210 LFHPKSEVIVSNAED--KSIRLWDMT--KRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285 (992)
Q Consensus 210 ~fspdg~~L~s~s~D--g~I~vwdl~--~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~ 285 (992)
+|+|+|++|++++.+ +.|.+|++. +++. +.+..+.. ...+..
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~---------------------------------~~~~~~~~-g~~~~~ 310 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTL---------------------------------TKVGYQLT-GIHPRN 310 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCE---------------------------------EEEEEEEC-SSCCCE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcE---------------------------------EEeeEecC-CCCCce
Confidence 999999988766654 789998874 1211 12223333 345678
Q ss_pred EEEeCCCCEEEEEE
Q psy2685 286 LVAHPTLNLFAAGH 299 (992)
Q Consensus 286 la~spdg~~Lasgs 299 (992)
++|+|+|++|++++
T Consensus 311 ~~~spdg~~l~~~~ 324 (361)
T 3scy_A 311 FIITPNGKYLLVAC 324 (361)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEE
Confidence 99999999888876
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=1.2e-16 Score=186.09 Aligned_cols=159 Identities=12% Similarity=0.035 Sum_probs=132.9
Q ss_pred CCCCEEEEEEcCCCCEEE----EEEcCCeEEEEEcCCC--------e---EEEEeccCCCCEEEEEEecC-CCEEEEEEC
Q psy2685 8 KSARVKGLSFHPKRPWIL----SSLHNGVIQLWDYRMN--------T---LLEKFDEHEGPVRGICFHNQ-QPIFVSGGD 71 (992)
Q Consensus 8 H~~~V~~iafspdg~~La----sg~~dg~I~IWd~~~g--------~---~~~~~~~h~~~V~~l~fspd-g~~Lasgs~ 71 (992)
|.+.|++++|+|++++|+ +|+.|+.|+|||+.++ + ....+.+|.+.|.+++|+|+ +.+|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 556799999999999999 6778999999998654 1 24566779999999999998 789999999
Q ss_pred CCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCC-------CCeEEEEEe
Q psy2685 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHN-------HYVMCAQFH 144 (992)
Q Consensus 72 Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~-------~~V~sl~fs 144 (992)
||+|++||++++.......+|...|.+++|+|+|.+|++|+.||+|++||.+ ++....+..|. ..|.+++|+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 9999999999998777777899999999999999999999999999999998 56566665442 379999999
Q ss_pred cCCCEEEE-EECCCe------EEEEECCCC
Q psy2685 145 PTDDIVVS-ASLDQT------IRVWDISGL 167 (992)
Q Consensus 145 pdg~~L~s-gs~Dg~------I~iwd~~~~ 167 (992)
+++.++++ ++.||. +++|++...
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 98876654 334433 788888653
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=1.3e-14 Score=164.60 Aligned_cols=288 Identities=11% Similarity=0.064 Sum_probs=182.5
Q ss_pred EEEEEEcC--CeEEEEEc--CCCeEEE--Eec-cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC-CCeEEEEEccC-C
Q psy2685 23 WILSSLHN--GVIQLWDY--RMNTLLE--KFD-EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK-QRKCIFTLLGH-L 93 (992)
Q Consensus 23 ~Lasg~~d--g~I~IWd~--~~g~~~~--~~~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h-~ 93 (992)
.+++|+.. +.|.+|++ .+|++.. ... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 56887765 5665432 221 233467889999999999998888 99999997 78765433211 1
Q ss_pred CCEEEEEEecCCCE--EEEEE-------------CCCeEEEEECC-CCeeEEEEe----cCCCCeEEEEEecCCCEEEEE
Q psy2685 94 DYIRTTFFHHEYPW--ILSAS-------------DDQTIRIWNWQ-SRNCICVLT----GHNHYVMCAQFHPTDDIVVSA 153 (992)
Q Consensus 94 ~~V~~i~fspd~~~--L~sgs-------------~Dg~I~vwdl~-t~~~i~~l~----~h~~~V~sl~fspdg~~L~sg 153 (992)
+.+.+++|+|++++ +++++ .+|.+.+|++. .++....+. .+...+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44542 68999999997 465544443 255679999999999988877
Q ss_pred EC-CCeEEEEECC-CCccccccCCcccCCCeEEEEEccCCcceEEEEEe--ccCCCeEEEEEcCCCCEEEEEeC-CCeEE
Q psy2685 154 SL-DQTIRVWDIS-GLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR--GHYNNVSCVLFHPKSEVIVSNAE-DKSIR 228 (992)
Q Consensus 154 s~-Dg~I~iwd~~-~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~--~h~~~V~~v~fspdg~~L~s~s~-Dg~I~ 228 (992)
+. ++.|.+||+. +.+ + ..+..+. .|...+..+.|+|+|+++++++. ++.|.
T Consensus 163 ~~~~~~v~~~~~~~~g~--------------~----------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 218 (365)
T 1jof_A 163 DLTANKLWTHRKLASGE--------------V----------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC 218 (365)
T ss_dssp ETTTTEEEEEEECTTSC--------------E----------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCCEEEEEEECCCCC--------------E----------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEE
Confidence 64 5788888876 321 1 1122222 24566899999999998887775 68899
Q ss_pred EEECC--CCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEee----cCCC------CEEEEE-EeCCCCEE
Q psy2685 229 LWDMT--KRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR----REQE------RFWVLV-AHPTLNLF 295 (992)
Q Consensus 229 vwdl~--~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~----~h~~------~V~~la-~spdg~~L 295 (992)
+|++. +++...... .+..+. ++.. .+..++ |+|||++|
T Consensus 219 v~~~~~~~g~~~~~~~-----------------------------~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 219 EYVIDPATHMPVYTHH-----------------------------SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp EEEECTTTCCEEEEEE-----------------------------EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred EEEEeCCCCcEEEccc-----------------------------eEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 98764 333211000 000111 1121 478899 99999988
Q ss_pred EEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEee-CCCceEEEEeecCCCccceeEEEcc---CCCEEEEEec
Q psy2685 296 AAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLT-NSKDSVVMQLRGGGRIPAHSISYNA---TEHSILVTTR 371 (992)
Q Consensus 296 asgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~-~~~~~~v~~l~~~~~~~I~~lafsp---dg~~lav~~~ 371 (992)
++++.+.- . -..+.+.+|++. +++...+......+...+..++|+| ||++|++++.
T Consensus 270 ~v~~~~~~------~--------------~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 270 FASSRANK------F--------------ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp EEEEEESS------T--------------TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred EEECCCCC------C--------------CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 76542100 0 001155667764 3332222111112344567899999 8999998864
Q ss_pred CCccccCCeEEEEEeCCC
Q psy2685 372 NANNFENSTYDLYMIPKE 389 (992)
Q Consensus 372 ~~~~~~~g~i~i~~l~~~ 389 (992)
+ ++.+.+|++...
T Consensus 330 ~-----~~~v~v~~~~~~ 342 (365)
T 1jof_A 330 Q-----EGWLEIYRWKDE 342 (365)
T ss_dssp S-----SCEEEEEEEETT
T ss_pred C-----CCeEEEEEEchh
Confidence 2 479999988654
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=3e-15 Score=166.87 Aligned_cols=270 Identities=10% Similarity=0.042 Sum_probs=181.4
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCC-CCEEEEEEecCCCEEE-EEECCCeEEEEECCCCeeEEEEec
Q psy2685 56 GICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHL-DYIRTTFFHHEYPWIL-SASDDQTIRIWNWQSRNCICVLTG 133 (992)
Q Consensus 56 ~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~i~fspd~~~L~-sgs~Dg~I~vwdl~t~~~i~~l~~ 133 (992)
++++++++.++++++.++.|.+||..+++....+..+. ..+..++|+|+++.++ +++.++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788889999999999999999999999888876543 2578899999998665 455789999999999998877764
Q ss_pred CC------CCeEEEEEecCCCEEEEEECC------------CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceE
Q psy2685 134 HN------HYVMCAQFHPTDDIVVSASLD------------QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE 195 (992)
Q Consensus 134 h~------~~V~sl~fspdg~~L~sgs~D------------g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~ 195 (992)
+. ..+.+++|+|+|+++++++.+ +.|.+||+.+.+... .
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----------------------~ 140 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-----------------------P 140 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-----------------------C
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc-----------------------e
Confidence 32 237889999999999998865 777777775432110 1
Q ss_pred EEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcc-----------cc-----cCEE-----E
Q psy2685 196 VDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER-----------FW-----SEVI-----V 254 (992)
Q Consensus 196 i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~-----------~~-----s~~l-----~ 254 (992)
+.... +...+.+++|+|+|+ +++++. .|.+||..+++.+..+...... .| ...+ +
T Consensus 141 ~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 141 VRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp SEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred eeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 11222 334588899999999 555544 4999999999887766543200 00 0000 1
Q ss_pred EEeCC-----------CeEEEEECCCCeE-EEEeecCCCCEEEEEEeC-CCCEEEEEECCCEEEEEecCCcceEEeeccE
Q psy2685 255 SNAED-----------KSIRLWDMTKRTC-LNTFRREQERFWVLVAHP-TLNLFAAGHDAGMVVFKFERERPAYTVHNNV 321 (992)
Q Consensus 255 sgs~D-----------g~I~vwd~~t~~~-v~~l~~h~~~V~~la~sp-dg~~Lasgsddgiivw~l~~~~~~~~~~~~~ 321 (992)
..+.| ..+..+|..+++. ...+..+...+..++|+| ++++++++ ++
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~-------------------- 275 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LN-------------------- 275 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ES--------------------
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cC--------------------
Confidence 11111 1122355555543 223334556788899999 99988876 32
Q ss_pred EEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCc
Q psy2685 322 MYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 322 v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
.+.+||+.+++....... ...+..++|+|+|+.|++++. ++.+.+|+.....
T Consensus 276 -------~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~------~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 276 -------RLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLE 327 (349)
T ss_dssp -------EEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTE
T ss_pred -------eEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEEecC------CCeEEEEeccccc
Confidence 344566655443332222 234688999999998887643 3899999986543
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=8.2e-15 Score=182.43 Aligned_cols=276 Identities=9% Similarity=0.032 Sum_probs=179.1
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCC-----EEEEEEecCCCEEEEEECC---------CeEE
Q psy2685 53 PVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDY-----IRTTFFHHEYPWILSASDD---------QTIR 118 (992)
Q Consensus 53 ~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----V~~i~fspd~~~L~sgs~D---------g~I~ 118 (992)
...++.|+|+|.+++++ ||.|.+||+.+++....+.+|... ...+.|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45688999999888886 999999999999988878777543 2347899999999998876 5677
Q ss_pred EEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEE
Q psy2685 119 IWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDI 198 (992)
Q Consensus 119 vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~ 198 (992)
+||+.+++.. .+..|...+...+|||||+.|+.++ |+.|++||..+........ . +. ....
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--------------~-g~--~~~~ 156 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--------------T-GK--EDII 156 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--------------C-CB--TTTE
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--------------C-CC--ccce
Confidence 9999998854 4566788899999999999998885 6899999987654322110 0 00 0001
Q ss_pred EeccC---------CCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCe-------eeeEeeccCcccccCEEEEEe--CC
Q psy2685 199 FRGHY---------NNVSCVLFHPKSEVIVSNAEDKS-IRLWDMTKRT-------CLNTFRREQERFWSEVIVSNA--ED 259 (992)
Q Consensus 199 l~~h~---------~~V~~v~fspdg~~L~s~s~Dg~-I~vwdl~~~~-------~l~~~~~~~~~~~s~~l~sgs--~D 259 (992)
+.++. +....+.|||||+.|+.++.|.+ +.+|++.... ....+.-.. .|. ..
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~---------~G~~~~~ 227 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK---------AGAVNPT 227 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB---------TTSCCCE
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC---------CcCcCCe
Confidence 22222 22345899999999998876655 8888753211 111111111 111 12
Q ss_pred CeEEEEECCC---Ce--EEEEee------cCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCC
Q psy2685 260 KSIRLWDMTK---RT--CLNTFR------REQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKER 328 (992)
Q Consensus 260 g~I~vwd~~t---~~--~v~~l~------~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~ 328 (992)
.+|++||+.+ ++ ....+. ++...+..++|+|||+.++.....+ ....
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~----------------------~~~~ 285 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI----------------------QNYS 285 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS----------------------TTEE
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC----------------------CCEE
Confidence 2688999998 73 223333 2667799999999999766543211 0112
Q ss_pred eEEEEEeeCCC-------ceEEEEeecCCCccc-----eeEEEccCCCEEE-EEecCCccccCCeEEEEEeC
Q psy2685 329 FLHRLDLTNSK-------DSVVMQLRGGGRIPA-----HSISYNATEHSIL-VTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 329 ~i~i~dl~~~~-------~~~v~~l~~~~~~~I-----~~lafspdg~~la-v~~~~~~~~~~g~i~i~~l~ 387 (992)
.|.+||+.+++ ...+.. .++...+ ...+|+|||+.++ ..+.. +|...||..+
T Consensus 286 ~i~~~d~~tg~~~~~~~~~~~l~~--~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~-----~G~~~l~~~~ 350 (740)
T 4a5s_A 286 VMDICDYDESSGRWNCLVARQHIE--MSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-----EGYRHICYFQ 350 (740)
T ss_dssp EEEEEEEETTTTEEEECGGGCEEE--ECSSSCSSSSSCCCCEECTTSSEEEEEEECT-----TSCEEEEEEE
T ss_pred EEEEEECCCCccccceeEEEEeee--ccCCceEccCcCCCceEcCCCCEEEEEEEcC-----CCceEEEEEE
Confidence 45667777765 111111 1233333 3788999999988 55432 3444555443
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=5.1e-15 Score=168.26 Aligned_cols=303 Identities=11% Similarity=0.076 Sum_probs=192.6
Q ss_pred EEEcCCCeEEEEeccCCCCEEE-----EEEecCCCEEEEEEC-CC--eEEEEEcCCCeEEEEEccCCCCEEEEEEecCCC
Q psy2685 35 LWDYRMNTLLEKFDEHEGPVRG-----ICFHNQQPIFVSGGD-DY--KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP 106 (992)
Q Consensus 35 IWd~~~g~~~~~~~~h~~~V~~-----l~fspdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~ 106 (992)
.+|..++..+..+..|...... .+|+|||++|+.++. +| .|.+||..+++......++...+....|+|+++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 4577788888888888777766 889999999998887 66 488889999888776666666665778999999
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEE--ecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEE
Q psy2685 107 WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQF--HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIK 184 (992)
Q Consensus 107 ~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~f--spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~ 184 (992)
.|+.++.++.|.+||+.+++.......+...+....| +|++..++....++.- |.................+..|.
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRED--WVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG--CCCCCSHHHHHHHGGGCCCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcc--cccccccchhhhhhccCCcceEE
Confidence 9999999999999999999887777766666654444 8888877643211000 00000000000000122335677
Q ss_pred EEEccCCcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEECCCCeeeeEeeccCcccccCEEEEEe
Q psy2685 185 LWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAEDK------SIRLWDMTKRTCLNTFRREQERFWSEVIVSNA 257 (992)
Q Consensus 185 iwd~~~~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~Dg------~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs 257 (992)
+||+.+++. ..+..+...+..+.|+| +|+.|+..+.++ .|.++
T Consensus 172 ~~d~~~g~~---~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~--------------------------- 221 (388)
T 3pe7_A 172 RVDLKTGES---TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI--------------------------- 221 (388)
T ss_dssp EEETTTCCE---EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE---------------------------
T ss_pred EEECCCCce---EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE---------------------------
Confidence 777776543 33445667789999999 999888776532 34444
Q ss_pred CCCeEEEEECCCCeEEEEeecCC--CCEEEEEEeCCCCEEEEEEC--C--C--EEEEEecCCcce---------------
Q psy2685 258 EDKSIRLWDMTKRTCLNTFRREQ--ERFWVLVAHPTLNLFAAGHD--A--G--MVVFKFERERPA--------------- 314 (992)
Q Consensus 258 ~Dg~I~vwd~~t~~~v~~l~~h~--~~V~~la~spdg~~Lasgsd--d--g--iivw~l~~~~~~--------------- 314 (992)
|..++.. ..+..+. ..+...+|+|||+.|+..+. + . +.+|++.+.+..
T Consensus 222 --------d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 292 (388)
T 3pe7_A 222 --------NEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNY 292 (388)
T ss_dssp --------ETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECT
T ss_pred --------eCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecC
Confidence 4333221 2222222 24667889999997655332 1 1 667777655421
Q ss_pred ----EEeeccEEEEE----------eCCeEEEEEeeCCCceEEEEeecCCCc-----------cceeEEEccCCCEEEEE
Q psy2685 315 ----YTVHNNVMYYV----------KERFLHRLDLTNSKDSVVMQLRGGGRI-----------PAHSISYNATEHSILVT 369 (992)
Q Consensus 315 ----~~~~~~~v~~~----------~~~~i~i~dl~~~~~~~v~~l~~~~~~-----------~I~~lafspdg~~lav~ 369 (992)
+...+..+++. .+..|.+||+.+++...+.. +.. .+..++|+|||+.|+.+
T Consensus 293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR----HDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp TSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE----CCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc----ccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 22233333322 23478899987765433221 122 46788999999999988
Q ss_pred ecCCccccCCeEEEEEeC
Q psy2685 370 TRNANNFENSTYDLYMIP 387 (992)
Q Consensus 370 ~~~~~~~~~g~i~i~~l~ 387 (992)
+.. +|...+|.+.
T Consensus 369 s~~-----~g~~~l~~~~ 381 (388)
T 3pe7_A 369 SDV-----HGKPALYLAT 381 (388)
T ss_dssp ECT-----TSSCEEEEEE
T ss_pred ecC-----CCceeEEEEE
Confidence 753 4566677654
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=5.2e-16 Score=192.24 Aligned_cols=328 Identities=13% Similarity=0.119 Sum_probs=206.2
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCC---CEEEEEEecCCCEEEEEEC---------CCeEEEEECC
Q psy2685 56 GICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD---YIRTTFFHHEYPWILSASD---------DQTIRIWNWQ 123 (992)
Q Consensus 56 ~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~i~fspd~~~L~sgs~---------Dg~I~vwdl~ 123 (992)
+++|+|+|.+ +..+.||.|.+||..+++....+.+|.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~-~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEY-LHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEE-EEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeE-EEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999954 4455799999999999998777766543 4889999999999998876 7899999999
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC
Q psy2685 124 SRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY 203 (992)
Q Consensus 124 t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~ 203 (992)
+++.+... .....+.+++|+|||+.|++++ ++.|++||+.+........ .+. ....+.+|.
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~---------------~~~--~~~v~~g~~ 159 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF---------------NGR--ENKIFNGIP 159 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC---------------CCB--TTTEEESSC
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec---------------CCC--cCCeEcccc
Confidence 88762101 1135688999999999999886 7899999987654321110 000 000122332
Q ss_pred CC---------eEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCeee--
Q psy2685 204 NN---------VSCVLFHPKSEVIVSNAEDK----------------------------------SIRLWDMTKRTCL-- 238 (992)
Q Consensus 204 ~~---------V~~v~fspdg~~L~s~s~Dg----------------------------------~I~vwdl~~~~~l-- 238 (992)
.. ..++.|||||+.|++++.|. .|++||+.+++..
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 22 25899999999999988652 7889999987642
Q ss_pred eEe------eccCcc----cc---cCEEEEEeCC----CeEEEEE----CCCCeEEEEe----ecCCCCEE-----EEEE
Q psy2685 239 NTF------RREQER----FW---SEVIVSNAED----KSIRLWD----MTKRTCLNTF----RREQERFW-----VLVA 288 (992)
Q Consensus 239 ~~~------~~~~~~----~~---s~~l~sgs~D----g~I~vwd----~~t~~~v~~l----~~h~~~V~-----~la~ 288 (992)
..+ ..+... .| +.++++.... ..|.+|| ..++++...+ ..+...+. .+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF 319 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred eEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence 111 112111 12 2455553322 2488899 8777765444 35566665 7899
Q ss_pred eCCCCEEEE--EECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEE
Q psy2685 289 HPTLNLFAA--GHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSI 366 (992)
Q Consensus 289 spdg~~Las--gsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~l 366 (992)
+|||+.++. +..++. ..|.+||+.+++. ..+. .+...+..+.++ +++.|
T Consensus 320 spdg~~l~~~~~~~~g~------------------------~~l~~~~~~~~~~---~~lt-~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGY------------------------KHIHYIKDTVENA---IQIT-SGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp CTTSSCEEEEEECTTSC------------------------EEEEEESSCSTTC---EECS-CSSSCEEEEEEE-CSSEE
T ss_pred CCCCCeEEEEEEccCCc------------------------eEEEEEECCCCce---Eecc-cCceEEEEEEEE-eCCEE
Confidence 999996554 333331 1244466655442 2232 234456777777 88888
Q ss_pred EEEecCCccccCCeEEEEEeCCCccc-cceecc----CccccceEEEEecCCeEEEEEc----CCeEEEEEcCCcc
Q psy2685 367 LVTTRNANNFENSTYDLYMIPKEESE-RKEVAD----GKRSTGISAVWVARNRFAVLDR----NHTILIKNLKNEY 433 (992)
Q Consensus 367 av~~~~~~~~~~g~i~i~~l~~~~~~-~~~~~~----~~~~~~~s~~w~~~~~~av~~~----~g~I~i~dl~~~~ 433 (992)
+..+... ...++..++|.++..... ...... ...+...+..|++++++++... ...+.+||+.+..
T Consensus 371 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 371 FYSSNEF-EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEEESCG-GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEecC-CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8776320 112477889988642110 111111 1234455678888776555432 2457788876543
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=1.4e-14 Score=164.20 Aligned_cols=250 Identities=9% Similarity=0.028 Sum_probs=165.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeEEEEeccC-CCCEEEEEEecCCCE--EEEEE-------------C
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYR-MNTLLEKFDEH-EGPVRGICFHNQQPI--FVSGG-------------D 71 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~-~g~~~~~~~~h-~~~V~~l~fspdg~~--Lasgs-------------~ 71 (992)
...+..++|+|++++|++++.+ .|.+|++. +++........ .+...+++|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3468899999999999999887 99999987 78765433211 133556899999994 44543 6
Q ss_pred CCeEEEEEcC-CCeEEEEEc----cCCCCEEEEEEecCCCEEEEEEC-CCeEEEEECC-CCeeE--EEEe--cCCCCeEE
Q psy2685 72 DYKIKVWNYK-QRKCIFTLL----GHLDYIRTTFFHHEYPWILSASD-DQTIRIWNWQ-SRNCI--CVLT--GHNHYVMC 140 (992)
Q Consensus 72 Dg~I~VWd~~-t~~~~~~l~----~h~~~V~~i~fspd~~~L~sgs~-Dg~I~vwdl~-t~~~i--~~l~--~h~~~V~s 140 (992)
+|.+.+|++. +++....+. .+...+.+++|+|+|+++++++. ++.|.+||+. +++.. ..+. .|...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 466544433 25567999999999998887764 6899999998 67643 3333 24567999
Q ss_pred EEEecCCCEEEEEEC-CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEE----eccCC------CeEEE
Q psy2685 141 AQFHPTDDIVVSASL-DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF----RGHYN------NVSCV 209 (992)
Q Consensus 141 l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l----~~h~~------~V~~v 209 (992)
++|+|+|+++++++. +++|.+|++.... +.+... ...+..+ .+|.. .+..+
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~------------g~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~i 259 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPAT------------HMPVYT------HHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTT------------CCEEEE------EEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCC------------CcEEEc------cceEEcCCCCcCCcccccccccccccE
Confidence 999999998888775 6889999875311 111100 0001111 12222 47889
Q ss_pred E-EcCCCCEEEEEeCCC------eEEEEECC-CCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q psy2685 210 L-FHPKSEVIVSNAEDK------SIRLWDMT-KRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE 281 (992)
Q Consensus 210 ~-fspdg~~L~s~s~Dg------~I~vwdl~-~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~ 281 (992)
+ |+|||++|++++.+. +|.+|++. +++.... ......+..
T Consensus 260 ~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~--------------------------------~~~~~~~~~ 307 (365)
T 1jof_A 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ--------------------------------LFLSPTPTS 307 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE--------------------------------EEEEECSSC
T ss_pred EEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe--------------------------------eeeeecCCC
Confidence 9 999999887765432 67888764 2321100 001222333
Q ss_pred CEEEEEEeC---CCCEEEEEECC--CEEEEEec
Q psy2685 282 RFWVLVAHP---TLNLFAAGHDA--GMVVFKFE 309 (992)
Q Consensus 282 ~V~~la~sp---dg~~Lasgsdd--giivw~l~ 309 (992)
....++|+| +|++|++++.+ .+.+|++.
T Consensus 308 ~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 445679999 89999887642 34455543
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=3.2e-15 Score=180.55 Aligned_cols=253 Identities=8% Similarity=-0.011 Sum_probs=173.4
Q ss_pred CCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCCCeEEEEEccCC-CCEEEEEEecCCCEEEEEEC---CCeEEEEECCC
Q psy2685 50 HEGPVRGICFHNQQPIFVSGGD-DYKIKVWNYKQRKCIFTLLGHL-DYIRTTFFHHEYPWILSASD---DQTIRIWNWQS 124 (992)
Q Consensus 50 h~~~V~~l~fspdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~-~~V~~i~fspd~~~L~sgs~---Dg~I~vwdl~t 124 (992)
+..+|.+++|+|||+.|++++. ||++.||++.+++... +..|. ..+..+.|+|+ ..+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999999887 9999999997776544 44454 68999999999 77777765 45456654432
Q ss_pred ---CeeEEEEecCCCCeEEEEEecCCC-EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe
Q psy2685 125 ---RNCICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR 200 (992)
Q Consensus 125 ---~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~ 200 (992)
+... .+.. ...+...+|+|+++ .+++++.++.+.+||+.+.. ...+.
T Consensus 98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---------------------------~~~l~ 148 (582)
T 3o4h_A 98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---------------------------LRELA 148 (582)
T ss_dssp TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---------------------------EEEEE
T ss_pred cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---------------------------EEEee
Confidence 2222 3332 22345678888885 33333444445588876532 11222
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeeEeeccCccc----c---cCEEEEEeCCC--eEEEEEC
Q psy2685 201 GHYNNVSCVLFHPKSEVIVSNAED----KSIRLWDMTKRTCLNTFRREQERF----W---SEVIVSNAEDK--SIRLWDM 267 (992)
Q Consensus 201 ~h~~~V~~v~fspdg~~L~s~s~D----g~I~vwdl~~~~~l~~~~~~~~~~----~---s~~l~sgs~Dg--~I~vwd~ 267 (992)
.+.. .++.|+|||++|++++.| +.|++||+.+++.. .+..+.... | +..++++..++ .|++||+
T Consensus 149 ~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 149 RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP 225 (582)
T ss_dssp EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence 2222 789999999999988877 78999999887754 344333222 2 37788888888 8999999
Q ss_pred CCCeEEEEeecCCCCEEEEE--------EeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCC
Q psy2685 268 TKRTCLNTFRREQERFWVLV--------AHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSK 339 (992)
Q Consensus 268 ~t~~~v~~l~~h~~~V~~la--------~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~ 339 (992)
.+++.. .+..+...+..++ |+|||.++++++.++. +++|++ ++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~--------------------------~~l~~~--g~ 276 (582)
T 3o4h_A 226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR--------------------------SAVFID--GE 276 (582)
T ss_dssp TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE--------------------------EEEEET--TE
T ss_pred CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc--------------------------EEEEEE--CC
Confidence 998877 6677776666667 9999988888765553 344555 22
Q ss_pred ceEEEEeecCCCccceeEEEccCCCEEEEEecC
Q psy2685 340 DSVVMQLRGGGRIPAHSISYNATEHSILVTTRN 372 (992)
Q Consensus 340 ~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~ 372 (992)
... .....+.+++|+ +|+.+++++..
T Consensus 277 ~~~------~~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 277 RVE------APQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EEC------CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred eec------cCCCceEEEEec-CCEEEEEEcCC
Confidence 111 123567889999 99888776654
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=9.2e-14 Score=151.28 Aligned_cols=242 Identities=12% Similarity=0.199 Sum_probs=175.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEecc------CCCCEEEEEEe-cCCCEEEEEEC-CCeEEEE
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDE------HEGPVRGICFH-NQQPIFVSGGD-DYKIKVW 78 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~------h~~~V~~l~fs-pdg~~Lasgs~-Dg~I~VW 78 (992)
+|-..+.+++++|++.++++...++.|.+||.. ++.+..+.. +...+.+++++ +++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 344679999999999988887889999999966 666666642 34578999995 66766655533 8899999
Q ss_pred EcCCCeEEEEEc-cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe--cCCCCeEEEEEecCCCEEEEEEC
Q psy2685 79 NYKQRKCIFTLL-GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT--GHNHYVMCAQFHPTDDIVVSASL 155 (992)
Q Consensus 79 d~~t~~~~~~l~-~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~ 155 (992)
| .+++.+..+. .+...+.+++++|++.++++.+.++.|.+||.. ++.+..+. .+...+.+++++|+++++++.+.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5677766664 344678999999999988877788999999964 56566654 35567899999999998887778
Q ss_pred CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe--ccCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEC
Q psy2685 156 DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR--GHYNNVSCVLFHPKSEVIVSNAEDK-SIRLWDM 232 (992)
Q Consensus 156 Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~--~h~~~V~~v~fspdg~~L~s~s~Dg-~I~vwdl 232 (992)
++.|++||..+. .+..+. ++...+..++++|+|+++++...++ .|.+||.
T Consensus 184 ~~~i~~~~~~g~---------------------------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 184 AHCVKVFNYEGQ---------------------------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp GTEEEEEETTCC---------------------------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred CCEEEEEcCCCC---------------------------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 899999997542 122222 2235688999999999888887775 8999974
Q ss_pred CCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCc
Q psy2685 233 TKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERER 312 (992)
Q Consensus 233 ~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~ 312 (992)
. ++.+..+.. ......+.+++++|+|+++++..++.+.+|++....
T Consensus 237 ~-g~~~~~~~~---------------------------------~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 237 D-GQLISALES---------------------------------KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp T-SCEEEEEEE---------------------------------SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred C-CCEEEEEcc---------------------------------cCCCCcceeEEECCCCcEEEECCCCeEEEEEccccc
Confidence 3 332222110 111234678999999998888555556677765443
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.5e-14 Score=177.16 Aligned_cols=277 Identities=13% Similarity=0.073 Sum_probs=184.4
Q ss_pred eecCCCCEEEEEEcCCCCEEEEE--EcCCeEEEEEcCCCeEEEEeccCCCCEE---------EEEEe--cCCCE-EEEEE
Q psy2685 5 FETKSARVKGLSFHPKRPWILSS--LHNGVIQLWDYRMNTLLEKFDEHEGPVR---------GICFH--NQQPI-FVSGG 70 (992)
Q Consensus 5 l~~H~~~V~~iafspdg~~Lasg--~~dg~I~IWd~~~g~~~~~~~~h~~~V~---------~l~fs--pdg~~-Lasgs 70 (992)
+.+|...+..++|++++-+++.+ +.++...||....+.....+..|...+. ...|+ |||+. |+.++
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 56789999999999886666666 4578899999655555666777776666 66676 99998 77665
Q ss_pred C-CCeEEEEEcC--C-CeEEEEEcc-----CCCCEEEEEEecCCCEEEEEECC----------CeEEEEECCC------C
Q psy2685 71 D-DYKIKVWNYK--Q-RKCIFTLLG-----HLDYIRTTFFHHEYPWILSASDD----------QTIRIWNWQS------R 125 (992)
Q Consensus 71 ~-Dg~I~VWd~~--t-~~~~~~l~~-----h~~~V~~i~fspd~~~L~sgs~D----------g~I~vwdl~t------~ 125 (992)
. +..|.+|+.. . +. ...+.. |...+..++|+|||+.|++++.+ ..|++||+.+ +
T Consensus 99 ~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 4 5566666665 2 33 444555 66778999999999999998877 6899999987 5
Q ss_pred eeEEEEe-cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEcc-CCcc-eEEEEEecc
Q psy2685 126 NCICVLT-GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN-DSKA-WEVDIFRGH 202 (992)
Q Consensus 126 ~~i~~l~-~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~-~~~~-~~i~~l~~h 202 (992)
+. ..+. .+...+..++|+|||++|+.++.++...-| ....|.+|++. ++.. .......+|
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~----------------~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW----------------EGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT----------------TCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCC----------------CCcEEEEEEECCCCcccccEEeCCCC
Confidence 44 4455 566778889999999999988755410000 00234444444 2211 122333455
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeeEeeccCcc---------------cccCEEEEEeCCCeEEEE
Q psy2685 203 YNNVSCVLFHPKSEVIVSNAEDK--SIRLWDMTKRTCLNTFRREQER---------------FWSEVIVSNAEDKSIRLW 265 (992)
Q Consensus 203 ~~~V~~v~fspdg~~L~s~s~Dg--~I~vwdl~~~~~l~~~~~~~~~---------------~~s~~l~sgs~Dg~I~vw 265 (992)
...+..+.|+|||+++++++.++ .|.+||..+++.......+... ..+.++++++. +.+++|
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 78899999999999888888888 6666776666544333222111 02367778887 988998
Q ss_pred --ECCCCeEEEEeecCCCCEEEE-EEeCCCCEEEEEECC
Q psy2685 266 --DMTKRTCLNTFRREQERFWVL-VAHPTLNLFAAGHDA 301 (992)
Q Consensus 266 --d~~t~~~v~~l~~h~~~V~~l-a~spdg~~Lasgsdd 301 (992)
|..+++ +..+..+...+..+ +++++.-++++++.+
T Consensus 320 ~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 320 ILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp EEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred EEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCC
Confidence 666665 66777776667766 444333333444443
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=4.9e-15 Score=168.34 Aligned_cols=259 Identities=7% Similarity=0.019 Sum_probs=173.8
Q ss_pred EEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q psy2685 12 VKGLSFHPKRPWILSSLHN---GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~d---g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~ 88 (992)
+.+++|||||++|+.+... ..|.+||..+++.......+......+.|+|+|+.|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6788999999998877643 3788999888876544333332233478999999999999999999999998876655
Q ss_pred EccCCCCEEE-------------------EEEecCCCEEEEE-----ECCCeEEEEECCCCeeEEEEecCCCCeEEEEEe
Q psy2685 89 LLGHLDYIRT-------------------TFFHHEYPWILSA-----SDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFH 144 (992)
Q Consensus 89 l~~h~~~V~~-------------------i~fspd~~~L~sg-----s~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fs 144 (992)
...+...... +.|+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 5544442222 3456777665543 45678999999988765544 467789999999
Q ss_pred c-CCCEEEEEECCC------eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc--CCCeEEEEEcCCC
Q psy2685 145 P-TDDIVVSASLDQ------TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH--YNNVSCVLFHPKS 215 (992)
Q Consensus 145 p-dg~~L~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h--~~~V~~v~fspdg 215 (992)
| ++..++.++.++ .|.+||..+. . ...+..+ ...+..+.|+|+|
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------------------~---~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGS------------------------N---VRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSC------------------------C---CEESSCCCTTEEEEEEEECTTS
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCC------------------------c---eeEeeccCCCccccceEECCCC
Confidence 9 787777766432 3555554432 1 1112222 2347789999999
Q ss_pred CEEEEEeCC-----CeEEEEECCCCeeeeEe--eccCccc----ccCEEEEEe----------------CCCeEEEEECC
Q psy2685 216 EVIVSNAED-----KSIRLWDMTKRTCLNTF--RREQERF----WSEVIVSNA----------------EDKSIRLWDMT 268 (992)
Q Consensus 216 ~~L~s~s~D-----g~I~vwdl~~~~~l~~~--~~~~~~~----~s~~l~sgs----------------~Dg~I~vwd~~ 268 (992)
+.|+.++.+ +.|.+||+.+++..... .... .. .+..+++++ .++.|.+||..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 987776554 45999999887643322 2111 22 235666543 34789999998
Q ss_pred CCeEEEEeecCCC-----------CEEEEEEeCCCCEEEEEEC
Q psy2685 269 KRTCLNTFRREQE-----------RFWVLVAHPTLNLFAAGHD 300 (992)
Q Consensus 269 t~~~v~~l~~h~~-----------~V~~la~spdg~~Lasgsd 300 (992)
+++.. .+..+.. .+..++|+|+|+.|+.+++
T Consensus 329 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 329 AKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp TTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 87643 3333333 2456789999998887764
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=1e-13 Score=157.21 Aligned_cols=267 Identities=9% Similarity=0.050 Sum_probs=193.6
Q ss_pred CCCEEEEEE------cCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEEC----------CCeEEEEEcCCC
Q psy2685 20 KRPWILSSL------HNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD----------DYKIKVWNYKQR 83 (992)
Q Consensus 20 dg~~Lasg~------~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~VWd~~t~ 83 (992)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+|++++++.. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566777654 3679999999999998888776665 8999999999998863 678999999999
Q ss_pred eEEEEEccC------CCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEE-EecCCCCeEEEEEecCC-CEEEEE
Q psy2685 84 KCIFTLLGH------LDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICV-LTGHNHYVMCAQFHPTD-DIVVSA 153 (992)
Q Consensus 84 ~~~~~l~~h------~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~-l~~h~~~V~sl~fspdg-~~L~sg 153 (992)
+.+..+... ......++++|+|++++++.. +++|.+||+.+++.+.. +. +.. ...+.+.|++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEE
Confidence 888877532 245678999999999998874 68999999999988777 44 222 2335567766 677888
Q ss_pred ECCCeEEEEECCC-Cccc-------cccCC----------------cccCCCeEEEEEccCCcceEEEEEec------cC
Q psy2685 154 SLDQTIRVWDISG-LRKK-------NVAPG----------------MGADDRQIKLWRMNDSKAWEVDIFRG------HY 203 (992)
Q Consensus 154 s~Dg~I~iwd~~~-~~~~-------~~~~~----------------~~~~d~~I~iwd~~~~~~~~i~~l~~------h~ 203 (992)
+.||.+.+|+... .+.. ..... ....++.+.++|+..........+.- +.
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK 249 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence 8899988888754 2211 00000 11234678888876554322222211 00
Q ss_pred ----CCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeeEeeccCcccc-------cCEEEEEeCCCe
Q psy2685 204 ----NNVSCVLFHPKSEVIVSNAE-----------DKSIRLWDMTKRTCLNTFRREQERFW-------SEVIVSNAEDKS 261 (992)
Q Consensus 204 ----~~V~~v~fspdg~~L~s~s~-----------Dg~I~vwdl~~~~~l~~~~~~~~~~~-------s~~l~sgs~Dg~ 261 (992)
.....+.|+|+++.+.++.. +++|.+||+.+++.+.++..+. .+ +..+++++. +.
T Consensus 250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence 11112689999887776543 3589999999999999888766 32 367777776 99
Q ss_pred EEEEECCCC--eEEEEeecCCCCEEEEEEeCCCC
Q psy2685 262 IRLWDMTKR--TCLNTFRREQERFWVLVAHPTLN 293 (992)
Q Consensus 262 I~vwd~~t~--~~v~~l~~h~~~V~~la~spdg~ 293 (992)
|.+||..++ +.+.++.......+.++++|+|.
T Consensus 327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999 99988866677788999999985
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=1.4e-13 Score=153.19 Aligned_cols=262 Identities=9% Similarity=0.024 Sum_probs=184.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~ 88 (992)
+..|.+++|+|++..++..+.++.++.| .++....+..+...+.+++|+|+|++++++..++.|.+||..+++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 4568889999998877777778899999 4556677777777889999999999878888899999999988876655
Q ss_pred EccCCCCEEEEEEecCCCEEEEEECC----CeEEEEECCCCeeEEEEe--cCCCCeEEEEEecCCCEEEEEEC------C
Q psy2685 89 LLGHLDYIRTTFFHHEYPWILSASDD----QTIRIWNWQSRNCICVLT--GHNHYVMCAQFHPTDDIVVSASL------D 156 (992)
Q Consensus 89 l~~h~~~V~~i~fspd~~~L~sgs~D----g~I~vwdl~t~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~------D 156 (992)
...+...+.+++|+|++.+++++..+ +.|.+||.+++.....+. .+...+.+++++|+++++++... .
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 54567889999999999987777666 689999998876554443 24567899999999987776553 2
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC-
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTK- 234 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~- 234 (992)
+.|..+|..+ .. ...+..+...+..++|+|+++.+ ++.+.++.|.+||..+
T Consensus 162 ~~l~~~~~~~------------------------~~---~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 162 GGVYYVSPDF------------------------RT---VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp EEEEEECTTS------------------------CC---EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ceEEEEeCCC------------------------CE---EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 3344444332 11 11112233457889999999855 4555688999999864
Q ss_pred CeeeeEe--------eccCc---cc---ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCC------CEEEEEEeCCCCE
Q psy2685 235 RTCLNTF--------RREQE---RF---WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE------RFWVLVAHPTLNL 294 (992)
Q Consensus 235 ~~~l~~~--------~~~~~---~~---~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~------~V~~la~spdg~~ 294 (992)
+..+..+ ..+.. .. .+.+.++...++.|.+||. +++.+..+..+.. .+.+++|+|++..
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 215 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred CcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 3322211 11100 01 1356666677899999998 5666666654433 5789999999876
Q ss_pred EEEEECC
Q psy2685 295 FAAGHDA 301 (992)
Q Consensus 295 Lasgsdd 301 (992)
|.+++.+
T Consensus 294 L~v~~~~ 300 (333)
T 2dg1_A 294 LIICSND 300 (333)
T ss_dssp EEEEEEC
T ss_pred EEEEeCc
Confidence 6655443
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=1.2e-11 Score=148.22 Aligned_cols=322 Identities=11% Similarity=0.034 Sum_probs=213.2
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC--CCeEEEEEccCCCCE
Q psy2685 19 PKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK--QRKCIFTLLGHLDYI 96 (992)
Q Consensus 19 pdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V 96 (992)
|.+..+++...++.|.++|..+++.+.++... ..+.++.|+|||+++++++.|+.|.+||+. +++.+.++.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 33445566667899999999999999888643 456799999999999999999999999995 888887776543 46
Q ss_pred EEEEEe----cCCCEEEEEEC-CCeEEEEECCCCeeEEEEecC-----------CCCeEEEEEecCCCEEEE-EECCCeE
Q psy2685 97 RTTFFH----HEYPWILSASD-DQTIRIWNWQSRNCICVLTGH-----------NHYVMCAQFHPTDDIVVS-ASLDQTI 159 (992)
Q Consensus 97 ~~i~fs----pd~~~L~sgs~-Dg~I~vwdl~t~~~i~~l~~h-----------~~~V~sl~fspdg~~L~s-gs~Dg~I 159 (992)
..++|+ |+|+++++++. +++|.++|..+.+.+.++... ...+..+..++++..++. ...+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 899999 69998877664 599999999999988876532 125677888887654443 3445777
Q ss_pred EEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeee
Q psy2685 160 RVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMTKRTCL 238 (992)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~~~~~l 238 (992)
.++|..... ...+..+ ........+.|+|+|+++++++ .++.|.++|+.+++.+
T Consensus 323 ~~vd~~~~~------------------------~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 323 LLVDYTDLN------------------------NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEETTCSS------------------------EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEecCCCc------------------------cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 777765421 1122222 2234566889999999877665 5789999999999887
Q ss_pred eEeec-cCcc-------cc----cCEEEEEe-CCCeEEEEECCC-------CeEEEEeecCCCCEEEEEEeCCCCEEEEE
Q psy2685 239 NTFRR-EQER-------FW----SEVIVSNA-EDKSIRLWDMTK-------RTCLNTFRREQERFWVLVAHPTLNLFAAG 298 (992)
Q Consensus 239 ~~~~~-~~~~-------~~----s~~l~sgs-~Dg~I~vwd~~t-------~~~v~~l~~h~~~V~~la~spdg~~Lasg 298 (992)
..+.. ...+ +. +...+++. .++.|.++|..+ .+.+.++......-..+..||+++.+.+.
T Consensus 378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~ 457 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD 457 (567)
T ss_dssp EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence 76654 2111 11 23445553 568999999988 67788887654443446789999887764
Q ss_pred ECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCC-----Cce-EEEEee-----cCCCccceeEEEccCCCEEE
Q psy2685 299 HDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNS-----KDS-VVMQLR-----GGGRIPAHSISYNATEHSIL 367 (992)
Q Consensus 299 sddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~-----~~~-~v~~l~-----~~~~~~I~~lafspdg~~la 367 (992)
..-+- +. --..+|.++|+.+. ... .++... ......+..+.|+|+|+.+.
T Consensus 458 ~~~~~-------~~------------~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 518 (567)
T 1qks_A 458 ATLNP-------EA------------EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVW 518 (567)
T ss_dssp CTTCS-------SH------------HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEE
T ss_pred cCCCC-------Cc------------ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEE
Confidence 41000 00 00124455665544 111 111110 01234678999999999988
Q ss_pred EEecCCccccCCeEEEEEeC
Q psy2685 368 VTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 368 v~~~~~~~~~~g~i~i~~l~ 387 (992)
++..+ .-..++.+.+++..
T Consensus 519 ~s~~~-~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 519 FSVWN-GKDQESALVVVDDK 537 (567)
T ss_dssp EEEEC-CTTSCCEEEEEETT
T ss_pred EEeec-CCCCCCcEEEEECC
Confidence 77431 00123455555443
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=4.5e-13 Score=149.69 Aligned_cols=245 Identities=11% Similarity=0.120 Sum_probs=175.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcC------------------------CeEEEEEcCCCeEEEEec-cCCCCEEEEEEecCC
Q psy2685 9 SARVKGLSFHPKRPWILSSLHN------------------------GVIQLWDYRMNTLLEKFD-EHEGPVRGICFHNQQ 63 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~d------------------------g~I~IWd~~~g~~~~~~~-~h~~~V~~l~fspdg 63 (992)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+. .+-....+++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999988887766 479999988898877765 344578999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCe-EEEEE---------ccCCCCEEEEEEec-CCCEEEEEE-CCCeEEEEECCCCeeEEEE
Q psy2685 64 PIFVSGGDDYKIKVWNYKQRK-CIFTL---------LGHLDYIRTTFFHH-EYPWILSAS-DDQTIRIWNWQSRNCICVL 131 (992)
Q Consensus 64 ~~Lasgs~Dg~I~VWd~~t~~-~~~~l---------~~h~~~V~~i~fsp-d~~~L~sgs-~Dg~I~vwdl~t~~~i~~l 131 (992)
+++++...++.|.+||..... .+..+ .++......++++| ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999975442 44555 24455789999999 788888876 689999999 567777766
Q ss_pred ecC----------CCCeEEEEEecC-CCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEE-
Q psy2685 132 TGH----------NHYVMCAQFHPT-DDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF- 199 (992)
Q Consensus 132 ~~h----------~~~V~sl~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l- 199 (992)
... ......++++|+ +.++++.+.++.|++||..+++ .+..+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--------------------------~~~~~~ 235 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--------------------------FVREIK 235 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------------------------EEEEEC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--------------------------EEEEEe
Confidence 432 234899999998 6777777788889999886322 12222
Q ss_pred -eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEee-
Q psy2685 200 -RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR- 277 (992)
Q Consensus 200 -~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~- 277 (992)
..+...+.++.|+| +..+++.+ .+ | ++...+..|++||..+++.+..+.
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g---~~--~-----------------------v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNG---KP--Y-----------------------FGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEEC---CC--C-----------------------TTCSCCCCEEEEETTTCCEEEEECC
T ss_pred ccccCCCcceeeecC-CEEEEeCC---CE--E-----------------------eccCCCcEEEEEEcCCCeEEEEEcC
Confidence 24556788899999 43333322 11 1 112234557777777777777663
Q ss_pred --cCCCCEEEEEEeCCCCEEEEEECC-CEEEEEec
Q psy2685 278 --REQERFWVLVAHPTLNLFAAGHDA-GMVVFKFE 309 (992)
Q Consensus 278 --~h~~~V~~la~spdg~~Lasgsdd-giivw~l~ 309 (992)
.+......++++|+|.++++...+ .+.+|++.
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 556678999999999777776533 34455543
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=3.1e-13 Score=167.33 Aligned_cols=232 Identities=8% Similarity=0.005 Sum_probs=164.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCe--------
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNG-----VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK-------- 74 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg-----~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~-------- 74 (992)
|...+.+++|||||++||.++.++ .|++||+.+|+.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999999876543 8999999999876643222 23667999999999999887765
Q ss_pred --------EEEEEcCCCe----EEEEEccCCCCEEEEEEecCCCEEEEEEC-----CCeEEEEECCC------Ce-eEEE
Q psy2685 75 --------IKVWNYKQRK----CIFTLLGHLDYIRTTFFHHEYPWILSASD-----DQTIRIWNWQS------RN-CICV 130 (992)
Q Consensus 75 --------I~VWd~~t~~----~~~~l~~h~~~V~~i~fspd~~~L~sgs~-----Dg~I~vwdl~t------~~-~i~~ 130 (992)
|.+|++.++. .+.....|...+..+.|+|+|++|+.++. +..|.+||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999998875 33333335667889999999999988765 67899999976 43 4566
Q ss_pred EecCCCCeEEEEEecCCCEEEEEECCC----eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCC--
Q psy2685 131 LTGHNHYVMCAQFHPTDDIVVSASLDQ----TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYN-- 204 (992)
Q Consensus 131 l~~h~~~V~sl~fspdg~~L~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~-- 204 (992)
+..+...+.. .|+|+|+.|+..+..+ .|.+||+.+. .......+..|..
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~------------------------~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP------------------------EESKWKVLVPEHEKD 336 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC------------------------CGGGCEEEECCCSSC
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC------------------------CcccceeccCCCCCC
Confidence 6667666655 5888998877766532 4666665432 1001122334433
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEE
Q psy2685 205 NVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW 284 (992)
Q Consensus 205 ~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~ 284 (992)
.+..+.|++++.++++...|+..++| +||+.+++.+..+..+.+.+.
T Consensus 337 ~~~~~~~~~~~~lv~~~~~~g~~~l~---------------------------------~~~~~~g~~~~~l~~~~~~v~ 383 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLHDVKNTLQ---------------------------------LHDLATGALLKIFPLEVGSVV 383 (710)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEE---------------------------------EEETTTCCEEEEECCCSSEEE
T ss_pred eEEEEEEEcCCEEEEEEEECCEEEEE---------------------------------EEECCCCCEEEecCCCCceEE
Confidence 57788999888888888888866554 445555555566666666788
Q ss_pred EEEEeCCCCEEEEE
Q psy2685 285 VLVAHPTLNLFAAG 298 (992)
Q Consensus 285 ~la~spdg~~Lasg 298 (992)
.++++|++..++..
T Consensus 384 ~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQ 397 (710)
T ss_dssp EEECCTTCSEEEEE
T ss_pred EEecCCCCCEEEEE
Confidence 88999988766543
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=6.4e-13 Score=145.56 Aligned_cols=244 Identities=9% Similarity=0.039 Sum_probs=174.2
Q ss_pred EEeecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 3 TKFETKSARVKGLSFHPKRP-WILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~-~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+..+.....+++|+|+++ .++++..++.|..||..++ ...+..+...+.+++++|+|.++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 45667777889999999998 7778888999999998877 56676777889999999999987777667899999998
Q ss_pred CCeEEEEEccC----CCCEEEEEEecCCCEEEEE----E-------------CCCeEEEEECCCCeeEEEEecCCCCeEE
Q psy2685 82 QRKCIFTLLGH----LDYIRTTFFHHEYPWILSA----S-------------DDQTIRIWNWQSRNCICVLTGHNHYVMC 140 (992)
Q Consensus 82 t~~~~~~l~~h----~~~V~~i~fspd~~~L~sg----s-------------~Dg~I~vwdl~t~~~i~~l~~h~~~V~s 140 (992)
+++........ ...+..++++|+|.++++. + ..+.|..++.. ++ ...+..+......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence 88765443221 2346679999999988873 3 13456666654 44 4445567777899
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEE
Q psy2685 141 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVS 220 (992)
Q Consensus 141 l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s 220 (992)
++|+|+++.+++.+.++.|.+|++... +.+. .....+..+.+.+.+++++++|++.++
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~-------------g~~~---------~~~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNAR-------------GETE---------YQGVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSS-------------SCEE---------EEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCC-------------CcCc---------CCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence 999999998877777889999998621 1110 001111234455677899999987666
Q ss_pred EeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEE-eCCCCEEEEEE
Q psy2685 221 NAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVA-HPTLNLFAAGH 299 (992)
Q Consensus 221 ~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~-spdg~~Lasgs 299 (992)
. ++.|.+||.. ++.+..+..+.. +.+++| +|+++.|.+++
T Consensus 235 ~--~~~v~~~~~~------------------------------------g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 235 A--GDGVHVLTPD------------------------------------GDELGRVLTPQT-TSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp E--TTEEEEECTT------------------------------------SCEEEEEECSSC-CCEEEEESTTSCEEEEEE
T ss_pred c--CCeEEEECCC------------------------------------CCEEEEEECCCC-ceeEEEECCCCCEEEEEc
Confidence 5 6778888653 333444444445 788899 58999888888
Q ss_pred CCCEEEEEecCC
Q psy2685 300 DAGMVVFKFERE 311 (992)
Q Consensus 300 ddgiivw~l~~~ 311 (992)
.+++..++..+.
T Consensus 276 ~~~l~~~~~~~~ 287 (296)
T 3e5z_A 276 STEFWSIETNVR 287 (296)
T ss_dssp TTEEEEEECSCC
T ss_pred CCeEEEEEcccc
Confidence 887666555433
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=1.1e-12 Score=146.65 Aligned_cols=252 Identities=13% Similarity=0.100 Sum_probs=165.6
Q ss_pred CCEEEEEEcCCCCEEEEEE---------cCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC---C--eE
Q psy2685 10 ARVKGLSFHPKRPWILSSL---------HNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD---Y--KI 75 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~---------~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D---g--~I 75 (992)
..+...++ ||++++... .++.|.+||..+++... + ..+..++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45778888 899887653 25689999998886533 3 567889999999999887654 3 47
Q ss_pred EEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECC---------------------------CeEEEEECCCCeeE
Q psy2685 76 KVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDD---------------------------QTIRIWNWQSRNCI 128 (992)
Q Consensus 76 ~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D---------------------------g~I~vwdl~t~~~i 128 (992)
.+||+.+++.......+ . +..+.|+|+++.|+.++.+ ..|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 78888888766544433 3 9999999999988887642 57999999988874
Q ss_pred EEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEE
Q psy2685 129 CVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSC 208 (992)
Q Consensus 129 ~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~ 208 (992)
..+.. . .+..+.|+|+| ++++++.++.- .... ....|..++ ++ ....+..+ ..+..
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~----~~~~-----------~~~~l~~~d--~~---~~~~l~~~-~~~~~ 221 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREII----PQYF-----------KFWDIYIWE--DG---KEEKMFEK-VSFYA 221 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSS----CCSS-----------CCEEEEEEE--TT---EEEEEEEE-ESEEE
T ss_pred eeecC-C-CcccccCCCCe-EEEEEeccccc----cccc-----------ccccEEEeC--CC---ceEEeccC-cceee
Confidence 55554 3 78899999999 77777654310 0000 001222233 11 12223333 45554
Q ss_pred EEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeeEeeccCc-----ccc-cCEEEEEeCCCeEEEEECCCCeEEE
Q psy2685 209 VLFHPKSEVIVSNAED--------KSIRLWDMTKRTCLNTFRREQE-----RFW-SEVIVSNAEDKSIRLWDMTKRTCLN 274 (992)
Q Consensus 209 v~fspdg~~L~s~s~D--------g~I~vwdl~~~~~l~~~~~~~~-----~~~-s~~l~sgs~Dg~I~vwd~~t~~~v~ 274 (992)
+ +|+|+.|+.++.+ ..|.+|| +++.......+.. ..| ..++++++.++.+++| +.+++..
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~~~- 295 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGEIK- 295 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSSEE-
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCceE-
Confidence 4 9999988877754 3688888 4443222222111 111 1277888899999999 8766553
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEECCC
Q psy2685 275 TFRREQERFWVLVAHPTLNLFAAGHDAG 302 (992)
Q Consensus 275 ~l~~h~~~V~~la~spdg~~Lasgsddg 302 (992)
.+..+...+.+++|+| .++++++.++
T Consensus 296 ~~~~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 296 PIAKGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp EEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred EEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence 3334567899999999 5666655443
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=9.3e-14 Score=157.78 Aligned_cols=323 Identities=9% Similarity=0.069 Sum_probs=196.1
Q ss_pred EEEEcCCCeEEEEeccCCCC-----EEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEccCCCCEEEEEEecCC
Q psy2685 34 QLWDYRMNTLLEKFDEHEGP-----VRGICFHNQQPIFVSGGDD---YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEY 105 (992)
Q Consensus 34 ~IWd~~~g~~~~~~~~h~~~-----V~~l~fspdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~ 105 (992)
..+|..++..+..+..+... +..++|+|+|++|+.+... ..|.+||..+++......++......+.|+|++
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 44577888877777655443 6778999999998877553 378888998887654433333223347899999
Q ss_pred CEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCC----------
Q psy2685 106 PWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPG---------- 175 (992)
Q Consensus 106 ~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~---------- 175 (992)
+.|+.++.++.|.+||+.+++.......+.. |+|+++.++..+.++...+|... ....+.
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~----~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEILK----RDWQPLTSWEKFAEFY 162 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEEG----GGCCCCCSHHHHHHHH
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCccccccccc----cccCCCCcceeeeeec
Confidence 9999999999999999998877666654543 66777777776666666555421 000110
Q ss_pred cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEECCCCeeeeEeecc-Cc-
Q psy2685 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP-KSEVIVSNAED------KSIRLWDMTKRTCLNTFRRE-QE- 246 (992)
Q Consensus 176 ~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp-dg~~L~s~s~D------g~I~vwdl~~~~~l~~~~~~-~~- 246 (992)
....+..|.+||+.+++.. .+..+...+..+.|+| ++..|+..+.+ ..|.+||+.++......... ..
T Consensus 163 ~~~~~~~l~~~d~~~g~~~---~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 239 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELE---VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES 239 (396)
T ss_dssp HTCCCEEEEEEETTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred cCCCcceEEEEECCCCcEE---eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence 0134467888888776532 2335667789999999 78877766543 36888998765432222211 10
Q ss_pred ---ccc---cCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCEEEEEEeC-CCCEEEEEECCCEEEEEecCCcce
Q psy2685 247 ---RFW---SEVIVSNAED-----KSIRLWDMTKRTCLNTFRREQERFWVLVAHP-TLNLFAAGHDAGMVVFKFERERPA 314 (992)
Q Consensus 247 ---~~~---s~~l~sgs~D-----g~I~vwd~~t~~~v~~l~~h~~~V~~la~sp-dg~~Lasgsddgiivw~l~~~~~~ 314 (992)
..+ +..++.++.+ +.|.+||+.+++........ ... ..|+| +|+++++++.+.. +...
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p-~~~~------ 309 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAP-VDVA------ 309 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC------------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcc-eeec------
Confidence 112 3545554432 44999999988654332221 233 89999 9998887654311 0000
Q ss_pred EEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCC-------CccceeEEEccCCCEEEEEecCCccccCCeEEEEEeC
Q psy2685 315 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGG-------RIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 315 ~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~-------~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
.....-...+..+.+||+.+++...+......- ...+..++|+|||+.|+.++.. ++...+|.+.
T Consensus 310 ---~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~l~~~~ 381 (396)
T 3c5m_A 310 ---DADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-----EGVPAIYIAD 381 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEEE
T ss_pred ---cccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-----CCCceEEEEE
Confidence 000000012355777887766543322111000 0024668899999999988753 3555677654
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=3e-11 Score=131.25 Aligned_cols=272 Identities=7% Similarity=0.002 Sum_probs=189.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEE-eccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q psy2685 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEK-FDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83 (992)
Q Consensus 5 l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~-~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~ 83 (992)
+..+...+.+++++|+|...++...++.|.+||.. ++.... ...+...+.+++++++|..+++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44556789999999999977666557899999977 654332 22345779999999999977777668899999976 4
Q ss_pred eEE-EEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE-EecCCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 84 KCI-FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV-LTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 84 ~~~-~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~-l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
+.. .........+.++++.+++.++++...++.|..||. +++.... ...+...+.++++++++++.++...++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 332 222234567899999999988777777889999998 5544332 2334567899999999987777766788888
Q ss_pred EECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 162 wd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
||. + +.+..+ ....+...+.++.++++|.+.++...++.|.+||. +++... +
T Consensus 167 ~~~-~--------------g~~~~~-----------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~ 218 (299)
T 2z2n_A 167 ITE-S--------------GDITEF-----------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-F 218 (299)
T ss_dssp ECT-T--------------CCEEEE-----------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E
T ss_pred EcC-C--------------CcEEEe-----------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-E
Confidence 887 3 222111 12233456789999999998777777889999999 655332 2
Q ss_pred ecc--Ccccc-------cCEEEEEeCCCeEEEEECCCCeEEEEe--ecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecC
Q psy2685 242 RRE--QERFW-------SEVIVSNAEDKSIRLWDMTKRTCLNTF--RREQERFWVLVAHPTLNLFAAGHDAGMVVFKFER 310 (992)
Q Consensus 242 ~~~--~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v~~l--~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~ 310 (992)
... ..... +.+.++...++.|..||. ++.. ..+ ..+...+.++++ +++++.++.+.+++..++..+
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence 211 11111 255555557789999998 4543 333 344567899999 999988876677777776543
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.53 E-value=1.6e-13 Score=168.04 Aligned_cols=240 Identities=7% Similarity=-0.020 Sum_probs=160.8
Q ss_pred EeecCCCCEE---------EEEEc--CCCCE-EEEEEc-CCeEEEEEcC--C-CeEEEEecc-----CCCCEEEEEEecC
Q psy2685 4 KFETKSARVK---------GLSFH--PKRPW-ILSSLH-NGVIQLWDYR--M-NTLLEKFDE-----HEGPVRGICFHNQ 62 (992)
Q Consensus 4 ~l~~H~~~V~---------~iafs--pdg~~-Lasg~~-dg~I~IWd~~--~-g~~~~~~~~-----h~~~V~~l~fspd 62 (992)
++..|...+. ...|+ |||+. |+.++. +..|.+|+.. . + ....+.. |...+.+++|+||
T Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETT
T ss_pred eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccCCccCCCCccccCcEECCC
Confidence 4555655555 66666 99998 776653 4567777755 2 4 3445555 6678899999999
Q ss_pred CCEEEEEECC----------CeEEEEEcCC------CeEEEEEc-cCCCCEEEEEEecCCCEEEEEECC--------CeE
Q psy2685 63 QPIFVSGGDD----------YKIKVWNYKQ------RKCIFTLL-GHLDYIRTTFFHHEYPWILSASDD--------QTI 117 (992)
Q Consensus 63 g~~Lasgs~D----------g~I~VWd~~t------~~~~~~l~-~h~~~V~~i~fspd~~~L~sgs~D--------g~I 117 (992)
|+.|++++.+ ..|.+||+.+ ++. ..+. .+...+..++|||||++|+.++.+ ..|
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 9999988876 5899999987 554 3445 566778889999999999988755 379
Q ss_pred EEEECC-CC---eeEEEEecCCCCeEEEEEecCCCEEEEEECCC--eEEEEECCCCccccccCCcccCCCeEEEEEccCC
Q psy2685 118 RIWNWQ-SR---NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQ--TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191 (992)
Q Consensus 118 ~vwdl~-t~---~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~ 191 (992)
.+||+. ++ +......+|...+.++.|+|||+++++++.++ .|..||..+......
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l------------------- 280 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL------------------- 280 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-------------------
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-------------------
Confidence 999998 56 55455555678899999999999888888888 455555433221111
Q ss_pred cceEEEEEeccCC--------CeEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCeeeeEeeccCccc------cc-CE-E
Q psy2685 192 KAWEVDIFRGHYN--------NVSCVLFHPKSEVIVSNAEDKSIRLW--DMTKRTCLNTFRREQERF------WS-EV-I 253 (992)
Q Consensus 192 ~~~~i~~l~~h~~--------~V~~v~fspdg~~L~s~s~Dg~I~vw--dl~~~~~l~~~~~~~~~~------~s-~~-l 253 (992)
...+.. .+.++.|+|++.++++++. +.+++| |..++. +..+..+...+ .+ .+ +
T Consensus 281 -------~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 281 -------CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVG 351 (662)
T ss_dssp -------SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEE
T ss_pred -------ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEE
Confidence 111111 1456889999999999998 999999 655554 44444333211 11 22 3
Q ss_pred EEEeCCC--eEEEEECCCCeEE
Q psy2685 254 VSNAEDK--SIRLWDMTKRTCL 273 (992)
Q Consensus 254 ~sgs~Dg--~I~vwd~~t~~~v 273 (992)
++++.+. .|.++|+.+++..
T Consensus 352 ~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 352 VAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EEEETTEEEEEEEEETTTCCEE
T ss_pred EEcCCCCCCEEEEEECCCCceE
Confidence 3334443 4555566666543
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=7.8e-12 Score=139.57 Aligned_cols=262 Identities=12% Similarity=0.123 Sum_probs=173.0
Q ss_pred CCCEEEEEEecCCCEEEEEECC------------------------CeEEEEEcCCCeEEEEEc-cCCCCEEEEEEecCC
Q psy2685 51 EGPVRGICFHNQQPIFVSGGDD------------------------YKIKVWNYKQRKCIFTLL-GHLDYIRTTFFHHEY 105 (992)
Q Consensus 51 ~~~V~~l~fspdg~~Lasgs~D------------------------g~I~VWd~~t~~~~~~l~-~h~~~V~~i~fspd~ 105 (992)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+. ++...+..++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999988887777 479999999898877664 445678999999999
Q ss_pred CEEEEEECCCeEEEEECCCCe-eEEEE---------ecCCCCeEEEEEec-CCCEEEEEE-CCCeEEEEECCCCcccccc
Q psy2685 106 PWILSASDDQTIRIWNWQSRN-CICVL---------TGHNHYVMCAQFHP-TDDIVVSAS-LDQTIRVWDISGLRKKNVA 173 (992)
Q Consensus 106 ~~L~sgs~Dg~I~vwdl~t~~-~i~~l---------~~h~~~V~sl~fsp-dg~~L~sgs-~Dg~I~iwd~~~~~~~~~~ 173 (992)
.++++.+.++.|.+||..... .+..+ .++......++++| ++.++++.+ .++.|++||..+.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~------ 176 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK------ 176 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC------
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC------
Confidence 988888889999999986442 55555 24455789999999 788888876 6899999996532
Q ss_pred CCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCE
Q psy2685 174 PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK-SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEV 252 (992)
Q Consensus 174 ~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~ 252 (992)
.+..+....... ....++......++++|+ +.++++.+.++.|++||..+++.+..+..
T Consensus 177 --------~~~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~--------- 236 (329)
T 3fvz_A 177 --------FVTQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH--------- 236 (329)
T ss_dssp --------EEEEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC---------
T ss_pred --------EEEEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec---------
Confidence 111111000000 000122345789999998 77777777888888887765554333211
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEE
Q psy2685 253 IVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHR 332 (992)
Q Consensus 253 l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i 332 (992)
..+...+..++++| +..+++.+. ..+ . -.....+++
T Consensus 237 ------------------------~~~~~~~~~~~~~p-g~~~~~~g~--~~v---~--------------~~~~~~v~~ 272 (329)
T 3fvz_A 237 ------------------------ASFGRNVFAISYIP-GFLFAVNGK--PYF---G--------------DQEPVQGFV 272 (329)
T ss_dssp ------------------------TTTTTCEEEEEEET-TEEEEEECC--CCT---T--------------CSCCCCEEE
T ss_pred ------------------------cccCCCcceeeecC-CEEEEeCCC--EEe---c--------------cCCCcEEEE
Confidence 13445677889999 444443221 100 0 012346677
Q ss_pred EEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCC
Q psy2685 333 LDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 388 (992)
Q Consensus 333 ~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~ 388 (992)
|+..+++....+.....+...+..++++|+|..++ +.. .++.+.+|++..
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv-ad~-----~~~~I~~~~~~~ 322 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI-GDA-----HTNTVWKFTLTE 322 (329)
T ss_dssp EETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE-EES-----SSCCEEEEEEEE
T ss_pred EEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE-EEC-----CCCEEEEEeCCc
Confidence 88766654433321124556789999999995444 442 247888887653
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.50 E-value=4.5e-12 Score=143.67 Aligned_cols=270 Identities=7% Similarity=0.048 Sum_probs=181.3
Q ss_pred CCCEEEEEE------CCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEEC----------CCeEEEEECCCC
Q psy2685 62 QQPIFVSGG------DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASD----------DQTIRIWNWQSR 125 (992)
Q Consensus 62 dg~~Lasgs------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~----------Dg~I~vwdl~t~ 125 (992)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455565543 3679999999999998888776655 8999999999998863 678999999999
Q ss_pred eeEEEEecC------CCCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCccccc-cCC-----------------cccC
Q psy2685 126 NCICVLTGH------NHYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNV-APG-----------------MGAD 179 (992)
Q Consensus 126 ~~i~~l~~h------~~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~-~~~-----------------~~~~ 179 (992)
+.+.++... ......++++|+|+++++++. +++|.+||..+.+.... .+. ....
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence 888877643 345678999999999998874 58999999987655433 211 2245
Q ss_pred CCeEEEEEccCCcceE-EE----EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeeEeeccC-------
Q psy2685 180 DRQIKLWRMNDSKAWE-VD----IFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT--CLNTFRREQ------- 245 (992)
Q Consensus 180 d~~I~iwd~~~~~~~~-i~----~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~--~l~~~~~~~------- 245 (992)
++.+..|+........ .. .+..+..++ .+.++|++..++..+.++.+.++|+..+. ....+....
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 6777777775422111 10 111112222 23345677777778889999999997643 222221100
Q ss_pred ----c---cc---ccCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEE
Q psy2685 246 ----E---RF---WSEVIVSNAE-----------DKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMV 304 (992)
Q Consensus 246 ----~---~~---~s~~l~sgs~-----------Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgii 304 (992)
. .. .+..++++.. ++.|.+||..+++.+.++..+. .++++|+|+|++|++++.
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~---- 324 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG---- 324 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS----
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC----
Confidence 0 00 1233433322 3589999999999999998776 899999999998887654
Q ss_pred EEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCC
Q psy2685 305 VFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH 364 (992)
Q Consensus 305 vw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~ 364 (992)
+.+.+||..+++...+..+. .....++.++++|+|.
T Consensus 325 -----------------------~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 -----------------------GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp -----------------------SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred -----------------------CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 33455777666223333332 2345678899999985
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.47 E-value=1.5e-11 Score=152.20 Aligned_cols=287 Identities=12% Similarity=0.034 Sum_probs=178.0
Q ss_pred CCCCEEEEEEcCC-----eEEEEEcCCCeEEEEec------cCCCCEEEEEEecCCCEEEEEECCC-----eEEEEEcCC
Q psy2685 19 PKRPWILSSLHNG-----VIQLWDYRMNTLLEKFD------EHEGPVRGICFHNQQPIFVSGGDDY-----KIKVWNYKQ 82 (992)
Q Consensus 19 pdg~~Lasg~~dg-----~I~IWd~~~g~~~~~~~------~h~~~V~~l~fspdg~~Lasgs~Dg-----~I~VWd~~t 82 (992)
|+|++++....++ .+.+.+...++....+. +|...+.+++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899888665432 34444544444322221 2334688999999999998776543 899999999
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCe----------------EEEEECCCCee--EEEEe--cCCCCeEEEE
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQT----------------IRIWNWQSRNC--ICVLT--GHNHYVMCAQ 142 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~----------------I~vwdl~t~~~--i~~l~--~h~~~V~sl~ 142 (992)
++.......+ ..+..++|+|||+.|+.++.++. |++|++.++.. ...+. .|...+.++.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9877543222 22667999999999999988766 99999988652 22223 3556688999
Q ss_pred EecCCCEEEEEEC-----CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCE
Q psy2685 143 FHPTDDIVVSASL-----DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEV 217 (992)
Q Consensus 143 fspdg~~L~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~ 217 (992)
|+|||++|+.++. +..|.+||+.+.... ..+.. ....+..+...+.. .|+|+|+.
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------------------~~~~~-~~~~l~~~~~~~~~-~~s~dg~~ 299 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG------------------ITGIL-KWVKLIDNFEGEYD-YVTNEGTV 299 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS------------------SCSSC-CCEEEECSSSSCEE-EEEEETTE
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccc------------------cCCcc-ceEEeeCCCCcEEE-EEeccCCE
Confidence 9999999888765 345566655430000 00110 22334455555554 48888887
Q ss_pred EEEEeCCC----eEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCe--EEEEeecCCC--CEEEEEEe
Q psy2685 218 IVSNAEDK----SIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRT--CLNTFRREQE--RFWVLVAH 289 (992)
Q Consensus 218 L~s~s~Dg----~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~--~v~~l~~h~~--~V~~la~s 289 (992)
|+..+.++ .|.+||+. ++. ....+..+.. .+..++|+
T Consensus 300 l~~~s~~~~~~~~l~~~d~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 300 FTFKTNRHSPNYRLINIDFT-----------------------------------DPEESKWKVLVPEHEKDVLEWVACV 344 (710)
T ss_dssp EEEEECTTCTTCEEEEEETT-----------------------------------SCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEeCC-----------------------------------CCCcccceeccCCCCCCeEEEEEEE
Confidence 77665432 35555544 332 1122323332 57778898
Q ss_pred CCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEE
Q psy2685 290 PTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVT 369 (992)
Q Consensus 290 pdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~ 369 (992)
+++.+++++..++.. .+.+|++.+++....+.+ +...+..++++|++..+++.
T Consensus 345 ~~~~lv~~~~~~g~~------------------------~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKN------------------------TLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp TTTEEEEEEEETTEE------------------------EEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEE
T ss_pred cCCEEEEEEEECCEE------------------------EEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEE
Confidence 888888887766543 123356544442222222 35567889999999877766
Q ss_pred ecCCccccCCeEEEEEeCCCc
Q psy2685 370 TRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 370 ~~~~~~~~~g~i~i~~l~~~~ 390 (992)
..+ ....+.+..|++....
T Consensus 398 ~ss--~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 398 FTS--FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEC--SSCCCEEEEEETTSSS
T ss_pred EeC--CCCCCEEEEEECCCCc
Confidence 443 2456788888876543
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=1.5e-11 Score=133.60 Aligned_cols=197 Identities=11% Similarity=0.265 Sum_probs=149.2
Q ss_pred CCCCEEEEEE-cCCCCEEEEEEc-CCeEEEEEcCCCeEEEEecc-CCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q psy2685 8 KSARVKGLSF-HPKRPWILSSLH-NGVIQLWDYRMNTLLEKFDE-HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK 84 (992)
Q Consensus 8 H~~~V~~iaf-spdg~~Lasg~~-dg~I~IWd~~~g~~~~~~~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~ 84 (992)
|...+.++++ .+++.++++... ++.|.+|| .+++.+..+.. +...+.+++++|+|+++++...++.|.+||. +++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence 4457899999 467766555543 88999999 67777777743 4467899999999998887777899999996 455
Q ss_pred EEEEEc--cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecC--CCCeEEEEEecCCCEEEEEECCC-eE
Q psy2685 85 CIFTLL--GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGH--NHYVMCAQFHPTDDIVVSASLDQ-TI 159 (992)
Q Consensus 85 ~~~~l~--~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs~Dg-~I 159 (992)
....+. .+...+.++++++++.++++.+.++.|.+||. +++.+..+..+ ...+..++++|+|+++++...++ .|
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 555553 44567899999999998777778999999997 45666666543 36789999999999888887775 99
Q ss_pred EEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy2685 160 RVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH--YNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235 (992)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h--~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~ 235 (992)
.+||..+. .+..+..+ ...+.+++++|+|+++++ +.|++|++|+....
T Consensus 232 ~~~~~~g~---------------------------~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 232 TIFTQDGQ---------------------------LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEECTTSC---------------------------EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCC---------------------------EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99986531 12222222 234778999999987777 67999999998654
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.46 E-value=6.9e-12 Score=140.04 Aligned_cols=226 Identities=8% Similarity=0.099 Sum_probs=145.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcC---C--eEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC------------
Q psy2685 10 ARVKGLSFHPKRPWILSSLHN---G--VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD------------ 72 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~d---g--~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D------------ 72 (992)
..+.+++|||||++|+.++.+ + .|.+||+.+++....... .. +.+++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999999987754 3 488888888876555443 34 9999999999988887632
Q ss_pred ---------------CeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCC-------eEEEEECCCCeeEEE
Q psy2685 73 ---------------YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQ-------TIRIWNWQSRNCICV 130 (992)
Q Consensus 73 ---------------g~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg-------~I~vwdl~t~~~i~~ 130 (992)
..|.+||+.+++.+..+.. . .+..+.|+|++ ++++++.++ ...+|.+.+++.. .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-K 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-E
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-E
Confidence 5799999998887455544 3 78899999999 777776542 3344444455543 3
Q ss_pred EecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEE-E
Q psy2685 131 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSC-V 209 (992)
Q Consensus 131 l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~-v 209 (992)
+..+ ..+.++ +|+|+.++.++.++.- . ......|.+|+ ++. ......+|...+.. +
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~------~----------~~~~~~l~~~d--~~~--~~~l~~~~~~~~~~~~ 269 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKK------Y----------MSEHNKLYIYD--GKE--VMGILDEVDRGVGQAK 269 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSS------C----------CCSSCEEEEEC--SSC--EEESSTTCCSEEEEEE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccC------C----------ccccceEEEEC--CCc--eEeccccCCcccCCcc
Confidence 4334 555544 9999988877754310 0 00012333333 111 22223345667776 8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc----c-CEEEEEeCCCeE-EEEECC
Q psy2685 210 LFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW----S-EVIVSNAEDKSI-RLWDMT 268 (992)
Q Consensus 210 ~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~----s-~~l~sgs~Dg~I-~vwd~~ 268 (992)
.|+ ++ ++++++.++.+++| +.+++....... ...+. + .++++++.++.. .+|.+.
T Consensus 270 ~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 270 IKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG-RHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EET-TE-EEEEEEETTEEEEE-EESSSEEEEECS-SSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred EEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC-CCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 999 88 89999999999999 876554333322 22111 1 456666666544 666554
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=2.1e-11 Score=132.83 Aligned_cols=214 Identities=10% Similarity=0.070 Sum_probs=166.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEEccCC-CCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecC-CCCeE
Q psy2685 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHL-DYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGH-NHYVM 139 (992)
Q Consensus 62 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h-~~~V~ 139 (992)
.++.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45689999999999999999999999998776 4788999999999888 45788999998 89999988865 35788
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE
Q psy2685 140 CAQFHPTDDIVVSASL-DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI 218 (992)
Q Consensus 140 sl~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L 218 (992)
++.+.|+|+++++.+. ++.|..+|..+ ..+.-+.+.... ..+......+.+.++|+++
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~G--------------k~l~~~~~~~~~-------~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMKG--------------EVLSKTEFETGI-------ERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTTS--------------CEEEEEEECCSC-------SSGGGSCSCCEECTTSCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCCC--------------CEEEEEeccCCC-------CcccccccCceECCCCCEE
Confidence 9999999999999887 77787777643 222223222110 1122234456788999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeEeeccCccc------ccCEEEEEeCCCeEEEEECCCCeEEEEeecCC------CCEEEE
Q psy2685 219 VSNAEDKSIRLWDMTKRTCLNTFRREQERF------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ------ERFWVL 286 (992)
Q Consensus 219 ~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~------~~V~~l 286 (992)
++.+.++.|..||.. |+.+.++.....+. .+.++++++.++.|..+|..+|+.+.++..+. ..+..+
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred EEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 999999999999998 98888887643222 13778888888899999999999999886432 227888
Q ss_pred EEeCCCCEEEEEEC
Q psy2685 287 VAHPTLNLFAAGHD 300 (992)
Q Consensus 287 a~spdg~~Lasgsd 300 (992)
+..++|+++++.+.
T Consensus 219 ~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 219 FPLQNGGLYICNWQ 232 (276)
T ss_dssp EECTTSCEEEEEEC
T ss_pred eEcCCCCEEEEecc
Confidence 99999999988753
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.43 E-value=4.1e-12 Score=156.90 Aligned_cols=250 Identities=8% Similarity=-0.042 Sum_probs=163.0
Q ss_pred cCCCCEEEEEEcCC-----eEEEEEcCCCeEEEEec------cCCCCEEEEEEecCCCEEEE-----EECCCeEEEEEcC
Q psy2685 18 HPKRPWILSSLHNG-----VIQLWDYRMNTLLEKFD------EHEGPVRGICFHNQQPIFVS-----GGDDYKIKVWNYK 81 (992)
Q Consensus 18 spdg~~Lasg~~dg-----~I~IWd~~~g~~~~~~~------~h~~~V~~l~fspdg~~Las-----gs~Dg~I~VWd~~ 81 (992)
+|+|++++....++ .|.+.+...++....+. +|...+.+++|||||++|+. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 48899888776543 34444544554333322 34557899999999999984 3345689999999
Q ss_pred CCeEEEEEccCCCCE--EEEEEecCCCEEEEEECCCe-------------EEEEECCCCe----eEEEEecCCCCeEEEE
Q psy2685 82 QRKCIFTLLGHLDYI--RTTFFHHEYPWILSASDDQT-------------IRIWNWQSRN----CICVLTGHNHYVMCAQ 142 (992)
Q Consensus 82 t~~~~~~l~~h~~~V--~~i~fspd~~~L~sgs~Dg~-------------I~vwdl~t~~----~i~~l~~h~~~V~sl~ 142 (992)
+++... ..+...+ ..++|+|||+.|+.++.|.. |++|++.++. .+.....|...+.++.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 987641 1122222 67899999999999998776 9999998875 3333344566889999
Q ss_pred EecCCCEEEEEECCC----eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE
Q psy2685 143 FHPTDDIVVSASLDQ----TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI 218 (992)
Q Consensus 143 fspdg~~L~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L 218 (992)
|+|||++++.++.++ .|.+|+..+ + ....+..+...+....| |+|.++
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~------------------------~---~~~~l~~~~~~~~~~~~-~~g~l~ 285 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGE------------------------K---DFRLLVKGVGAKYEVHA-WKDRFY 285 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTC------------------------S---SCEEEEECSSCCEEEEE-ETTEEE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCC------------------------C---ceEEeecCCCceEEEEe-cCCcEE
Confidence 999999888877665 444443322 1 12223345555666666 566644
Q ss_pred EEEe---CCCeEEEEECCCCee--eeEeeccC-c-cc------ccCEEEEEeCCCeEEEEECC-CCeEEEEeecC-CCCE
Q psy2685 219 VSNA---EDKSIRLWDMTKRTC--LNTFRREQ-E-RF------WSEVIVSNAEDKSIRLWDMT-KRTCLNTFRRE-QERF 283 (992)
Q Consensus 219 ~s~s---~Dg~I~vwdl~~~~~--l~~~~~~~-~-~~------~s~~l~sgs~Dg~I~vwd~~-t~~~v~~l~~h-~~~V 283 (992)
+++. .++.|.+||+.++.. ...+..+. . .+ .+.++++...|+..++|.+. +++....+..+ ...+
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v 365 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA 365 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE
T ss_pred EEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE
Confidence 4444 258899999987642 12222221 1 11 12577888889988887654 45556666544 5567
Q ss_pred EEEEEeCCCCEEEE
Q psy2685 284 WVLVAHPTLNLFAA 297 (992)
Q Consensus 284 ~~la~spdg~~Las 297 (992)
..++++|++..++.
T Consensus 366 ~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 366 SNLMGLEDLDDAYY 379 (695)
T ss_dssp CCCBSCTTCSEEEE
T ss_pred EEeecCCCCCEEEE
Confidence 77888998876654
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.41 E-value=1.6e-11 Score=131.85 Aligned_cols=238 Identities=6% Similarity=-0.035 Sum_probs=159.6
Q ss_pred CEEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 11 RVKGLSFHPKRPWIL-SSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 11 ~V~~iafspdg~~La-sg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
...+++++|++..++ +.+.++.|.+||..++........+...+.+++++++|..+++.. ++.|.+||...+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 688999999999666 436788999999655443222122335678999999998665555 889999998765433221
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q psy2685 90 LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 169 (992)
Q Consensus 90 ~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~ 169 (992)
......+.++++++++.++++...++.|.+|+..+.............+.+++++|+++++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 22336789999999999777777788999998665544332233344678899999999777777778899998765321
Q ss_pred ccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc
Q psy2685 170 KNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW 249 (992)
Q Consensus 170 ~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~ 249 (992)
......+...+.+++++|+|.++++...++.|.+||..+....
T Consensus 184 --------------------------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~----------- 226 (270)
T 1rwi_B 184 --------------------------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST----------- 226 (270)
T ss_dssp --------------------------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-----------
T ss_pred --------------------------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-----------
Confidence 1111122356789999999988887777888999876542210
Q ss_pred cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCC-EEEEEecC
Q psy2685 250 SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAG-MVVFKFER 310 (992)
Q Consensus 250 s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddg-iivw~l~~ 310 (992)
.....+...+.+++++|+|+++++...++ +.++++..
T Consensus 227 ------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 227 ------------------------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp ------------------------ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ------------------------eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 00011234678899999999777765443 44555443
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=6.9e-10 Score=120.41 Aligned_cols=269 Identities=9% Similarity=-0.016 Sum_probs=183.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEE-EeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLE-KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKC 85 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~-~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~ 85 (992)
.....+.++++.++|...++...++.|.+||.. ++... .+..+...+.+++++++|...++...++.|..+|.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345688999999999977776678999999977 65443 223334679999999999877776668899999987 554
Q ss_pred EE-EEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE-EecCCCCeEEEEEecCCCEEEEEECCCeEEEEE
Q psy2685 86 IF-TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV-LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163 (992)
Q Consensus 86 ~~-~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~-l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd 163 (992)
.. ........+.++++.+++.+.++...++.|..+|.. ++.... +......+.++++.+++++.++...++.|..+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 32 222244678999999999877777668899999987 554422 233456789999999999666666677888888
Q ss_pred CCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE-ee
Q psy2685 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNT-FR 242 (992)
Q Consensus 164 ~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~-~~ 242 (992)
..+ .+..+ ....+...+..+.++++|.+.++....+.|.+||. ++..... ..
T Consensus 174 ~~g---------------~~~~~-----------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 226 (300)
T 2qc5_A 174 NTG---------------KLEEY-----------PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP 226 (300)
T ss_dssp TTC---------------CEEEE-----------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred CCC---------------cEEEe-----------eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence 732 11111 12233456889999999988887777788999998 4443322 11
Q ss_pred ccCcccc-------cCEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEE
Q psy2685 243 REQERFW-------SEVIVSNAEDKSIRLWDMTKRTCL-NTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFK 307 (992)
Q Consensus 243 ~~~~~~~-------s~~l~sgs~Dg~I~vwd~~t~~~v-~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~ 307 (992)
....... +.+.++...++.|..||.. +... ..+......+.+++++++|++.++.. +++..++
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~ 297 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-CKIGKLN 297 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-SEEEEEE
T ss_pred CCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-CceEEeC
Confidence 1111111 2455555567899999984 4432 22333345678899999999777655 3555544
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.41 E-value=3.3e-10 Score=125.80 Aligned_cols=222 Identities=10% Similarity=0.074 Sum_probs=156.3
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC----CeEEEE
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD----YKIKVW 78 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D----g~I~VW 78 (992)
..+..+...+.+++|+|++.+++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+ +.|.+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence 3466677788999999999977788888999999988887665554567789999999999987777666 689999
Q ss_pred EcCCCeEEEEEc--cCCCCEEEEEEecCCCEEEEEEC------CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEE
Q psy2685 79 NYKQRKCIFTLL--GHLDYIRTTFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIV 150 (992)
Q Consensus 79 d~~t~~~~~~l~--~h~~~V~~i~fspd~~~L~sgs~------Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L 150 (992)
|..++.....+. .+...+.+++++|++.++++... .+.|..+|..+++... +..+...+..++|+|+++.+
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEE
Confidence 988876553333 24467999999999987776553 3567777766555433 32334457899999999865
Q ss_pred EE-EECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy2685 151 VS-ASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229 (992)
Q Consensus 151 ~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~v 229 (992)
+. .+.++.|.+||..... ..+..+.. .....+.++ ..+..++++++|+++++...++.|.+
T Consensus 197 ~v~~~~~~~i~~~d~~~~g------------~~~~~~~~-----~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDG------------VTIQPFGA-----TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS------------SSEEEEEE-----EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred EEEeCCCCeEEEEEecCCC------------cCcccccc-----eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEE
Confidence 54 4567889999985311 11111100 001111222 35778999999998888888899999
Q ss_pred EECCCCeeeeEeecc
Q psy2685 230 WDMTKRTCLNTFRRE 244 (992)
Q Consensus 230 wdl~~~~~l~~~~~~ 244 (992)
||. +++.+..+..+
T Consensus 259 ~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 259 FNK-RGYPIGQILIP 272 (333)
T ss_dssp ECT-TSCEEEEEECT
T ss_pred ECC-CCCEEEEEEcC
Confidence 998 46666666543
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.41 E-value=1e-10 Score=127.92 Aligned_cols=254 Identities=8% Similarity=0.032 Sum_probs=160.0
Q ss_pred CeEEEEeccCCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEE
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRI 119 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~v 119 (992)
+..+..+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++|++.++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 334455555666788999999998 7778888999999999887 5666677788999999999998777767789999
Q ss_pred EECCCCeeEEEEecC----CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceE
Q psy2685 120 WNWQSRNCICVLTGH----NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE 195 (992)
Q Consensus 120 wdl~t~~~i~~l~~h----~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~ 195 (992)
||..+++........ ...+..++++|+|+++++.+..|+...+...... .....+.|..++.. + .
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~-------~~~~~~~l~~~~~~-g---~ 163 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE-------MELPGRWVFRLAPD-G---T 163 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC-------CCSSSCEEEEECTT-S---C
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc-------ccCCCcEEEEECCC-C---C
Confidence 999888755443321 2345679999999988874322211000000000 00000223223222 1 1
Q ss_pred EEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEE
Q psy2685 196 VDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT-KRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLN 274 (992)
Q Consensus 196 i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~-~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~ 274 (992)
...+..+......++|+|+++.+++.+.++.|.+|++. ++..... ..++
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~---------------------~~~~--------- 213 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ---------------------GVHF--------- 213 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE---------------------EEEE---------
T ss_pred EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC---------------------CeEe---------
Confidence 23344556677899999999988777778899999875 2321000 0111
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccc
Q psy2685 275 TFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA 354 (992)
Q Consensus 275 ~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I 354 (992)
..+...+..++++++|++.++. .+++.+|+ .. ++... .+. .+.. +
T Consensus 214 --~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~---------------------------~~-g~~~~--~~~-~~~~-~ 258 (296)
T 3e5z_A 214 --TVEPGKTDGLRVDAGGLIWASA-GDGVHVLT---------------------------PD-GDELG--RVL-TPQT-T 258 (296)
T ss_dssp --CCSSSCCCSEEEBTTSCEEEEE-TTEEEEEC---------------------------TT-SCEEE--EEE-CSSC-C
T ss_pred --eCCCCCCCeEEECCCCCEEEEc-CCeEEEEC---------------------------CC-CCEEE--EEE-CCCC-c
Confidence 1123345568999999987776 55555553 22 22111 121 1233 7
Q ss_pred eeEEE-ccCCCEEEEEecC
Q psy2685 355 HSISY-NATEHSILVTTRN 372 (992)
Q Consensus 355 ~~laf-spdg~~lav~~~~ 372 (992)
.+++| +|+++.|.+++.+
T Consensus 259 ~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp CEEEEESTTSCEEEEEETT
T ss_pred eeEEEECCCCCEEEEEcCC
Confidence 88999 5899998888754
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=4.5e-11 Score=130.15 Aligned_cols=193 Identities=7% Similarity=0.025 Sum_probs=154.2
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeEEEEeccCC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCC-CCEE
Q psy2685 20 KRPWILSSLHNGVIQLWDYRMNTLLEKFDEHE-GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHL-DYIR 97 (992)
Q Consensus 20 dg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~ 97 (992)
.++.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|+.++ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 35788999999999999988999999998776 4789999999999888 45778999998 899888887653 5788
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEECCCCeeEEEEec------CCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccc
Q psy2685 98 TTFFHHEYPWILSASD-DQTIRIWNWQSRNCICVLTG------HNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK 170 (992)
Q Consensus 98 ~i~fspd~~~L~sgs~-Dg~I~vwdl~t~~~i~~l~~------h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~ 170 (992)
++.+.++|..+++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++.+.++.|..||..+ +
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G-~-- 156 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG-Q-- 156 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS-C--
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC-C--
Confidence 9999999999999887 888888885 6777766642 222345667889999999999999999999873 1
Q ss_pred cccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeecc
Q psy2685 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE 244 (992)
Q Consensus 171 ~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~ 244 (992)
. +|.+. .+ ..+.++...++|+++++++.++.|..+|..+|+.+.++...
T Consensus 157 -----------~--~w~~~-----------~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 157 -----------L--LNSVK-----------LS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp -----------E--EEEEE-----------CS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred -----------E--EEEEE-----------CC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence 1 23222 11 23445777899999999998899999999999998888643
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=1.3e-11 Score=152.34 Aligned_cols=237 Identities=7% Similarity=-0.053 Sum_probs=156.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE-----cCCeEEEEEcCCCeEEEEeccCCCCE--EEEEEecCCCEEEEEECCCe-----
Q psy2685 7 TKSARVKGLSFHPKRPWILSSL-----HNGVIQLWDYRMNTLLEKFDEHEGPV--RGICFHNQQPIFVSGGDDYK----- 74 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~-----~dg~I~IWd~~~g~~~~~~~~h~~~V--~~l~fspdg~~Lasgs~Dg~----- 74 (992)
+|...+.+++|||||++||.+. .+..|++||+.+|+.+. ..+...+ .+++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4555789999999999999543 34689999999987641 1122222 67899999999999988766
Q ss_pred --------EEEEEcCCCe----EEEEEccCCCCEEEEEEecCCCEEEEEECCC----eEEEEECCCCeeEEEEecCCCCe
Q psy2685 75 --------IKVWNYKQRK----CIFTLLGHLDYIRTTFFHHEYPWILSASDDQ----TIRIWNWQSRNCICVLTGHNHYV 138 (992)
Q Consensus 75 --------I~VWd~~t~~----~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg----~I~vwdl~t~~~i~~l~~h~~~V 138 (992)
|.+|++.++. ++.....|...+..+.|+|+|++|++++.++ .|.+||..++. ...+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998775 4444445667889999999999988877666 67777765554 34455566666
Q ss_pred EEEEEecCCCEEEEEEC----CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc-CCCeEEEEEcC
Q psy2685 139 MCAQFHPTDDIVVSASL----DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH-YNNVSCVLFHP 213 (992)
Q Consensus 139 ~sl~fspdg~~L~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h-~~~V~~v~fsp 213 (992)
....| +++. ++..+. ++.|.+||+.+.... .+ ...+..+ ...+..+.|+
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~----------------------~~-~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA----------------------SW-KEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG----------------------GC-EEEECCCSSCEEEEEEEE-
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc----------------------CC-eEEecCCCCCeEEEEEEE-
Confidence 66667 4566 444443 466777766542110 01 1122222 4457788888
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCeeeeEeecc-Cccc-------ccCEEE-EEe---CCCeEEEEECCCCeE
Q psy2685 214 KSEVIVSNAEDKSIRLWDMT-KRTCLNTFRRE-QERF-------WSEVIV-SNA---EDKSIRLWDMTKRTC 272 (992)
Q Consensus 214 dg~~L~s~s~Dg~I~vwdl~-~~~~l~~~~~~-~~~~-------~s~~l~-sgs---~Dg~I~vwd~~t~~~ 272 (992)
++.++++...|+..++|.+. ++.....+..+ ...+ .+..++ +.+ ..++|++||+.+++.
T Consensus 329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 67788899999998888654 35444544433 1111 123343 332 346899999988763
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=4.6e-11 Score=148.61 Aligned_cols=227 Identities=10% Similarity=0.016 Sum_probs=149.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCe---------
Q psy2685 9 SARVKGLSFHPKRPWILSSLHN-----GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYK--------- 74 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~d-----g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~--------- 74 (992)
...+.+++|||||++||.++.+ ..|++||+.+|+.+... .+...+.+++|+|| +.|+.++.++.
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 3468899999999999987654 36999999999876532 12222357899999 98888876554
Q ss_pred -----EEEEEcCCCe----EEEEEccCCCCEEEEEEecCCCEEEEEECCC-----eEEEEECCCC--eeEEEEecCCCCe
Q psy2685 75 -----IKVWNYKQRK----CIFTLLGHLDYIRTTFFHHEYPWILSASDDQ-----TIRIWNWQSR--NCICVLTGHNHYV 138 (992)
Q Consensus 75 -----I~VWd~~t~~----~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg-----~I~vwdl~t~--~~i~~l~~h~~~V 138 (992)
|.+|++.++. .+.....+...+..+.|+|||++|+..+.++ .|.+||+.++ ++...+..+...+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 8899987764 3333333444688999999999988877544 8999999877 3145555565555
Q ss_pred EEEEEecCCCEEEEEECC----CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC
Q psy2685 139 MCAQFHPTDDIVVSASLD----QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK 214 (992)
Q Consensus 139 ~sl~fspdg~~L~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd 214 (992)
.... +|+++.|+..+.+ +.|.+||+.+.. .. ....+..+...+..+.|+ +
T Consensus 320 ~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-----------------------~~-~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 320 WDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-----------------------PR-FDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-----------------------CE-EEEEECCCSSEEEEEEEE-B
T ss_pred EEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-----------------------cc-cEEEecCCCCeEEEEEEE-C
Confidence 5553 4888888877754 235555554310 11 122234444556677777 5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCEEEEEEeCCCC
Q psy2685 215 SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRR-EQERFWVLVAHPTLN 293 (992)
Q Consensus 215 g~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~-h~~~V~~la~spdg~ 293 (992)
+.++++...|+..++|.+ +.. +.....+.. +...+..++++|+++
T Consensus 374 ~~lv~~~~~dg~~~l~~~---------------------------------~~~-g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 374 NRLFASYIHDAKSQVLAF---------------------------------DLD-GKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp TEEEEEEEETTEEEEEEE---------------------------------ETT-SCEEEECBCSSSCEEEEEECCBTCS
T ss_pred CEEEEEEEECCEEEEEEE---------------------------------eCC-CCceeeccCCCCeEEEEeecCCCCC
Confidence 667788888888777732 322 233344433 245678888999887
Q ss_pred EEEE
Q psy2685 294 LFAA 297 (992)
Q Consensus 294 ~Las 297 (992)
.++.
T Consensus 420 ~l~~ 423 (741)
T 1yr2_A 420 HAYL 423 (741)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 5543
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=4.3e-10 Score=123.32 Aligned_cols=246 Identities=13% Similarity=0.081 Sum_probs=161.8
Q ss_pred EeecCCCCEEEEEEcCCCCEEEE-------EEcCCeEEEEEcCCCeEEEEec----cCCCCEEEEEEecC-CCEEEEEEC
Q psy2685 4 KFETKSARVKGLSFHPKRPWILS-------SLHNGVIQLWDYRMNTLLEKFD----EHEGPVRGICFHNQ-QPIFVSGGD 71 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~Las-------g~~dg~I~IWd~~~g~~~~~~~----~h~~~V~~l~fspd-g~~Lasgs~ 71 (992)
.+...-....+++|++++..+++ +..++.|.+||..+++...... ++...+.+++++++ |.+++ ++.
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~ 90 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADM 90 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EET
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EEC
Confidence 34445556789999999987777 5678999999988887543222 24567899999999 65444 444
Q ss_pred CCeEEEEEcCCCeEEEE-Ecc----CCCCEEEEEEecCCCEEEEEECC---------------CeEEEEECCCCeeEEEE
Q psy2685 72 DYKIKVWNYKQRKCIFT-LLG----HLDYIRTTFFHHEYPWILSASDD---------------QTIRIWNWQSRNCICVL 131 (992)
Q Consensus 72 Dg~I~VWd~~t~~~~~~-l~~----h~~~V~~i~fspd~~~L~sgs~D---------------g~I~vwdl~t~~~i~~l 131 (992)
.+.|.+||.. ++.... ... ....+.++++++++.+.++...+ +.|..||.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~- 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV- 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-
Confidence 5579999988 665432 211 12357899999999877776554 567777765 554333
Q ss_pred ecCCCCeEEEEEe----cCCCEEEEE-ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC-CC
Q psy2685 132 TGHNHYVMCAQFH----PTDDIVVSA-SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY-NN 205 (992)
Q Consensus 132 ~~h~~~V~sl~fs----pdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~-~~ 205 (992)
..+......++|+ |+++.+..+ +.++.|.+||.... +.+.-. .....+.++. ..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~-------------g~~~~~-------~~~~~~~~~~~~~ 227 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-------------AKIENK-------KVWGHIPGTHEGG 227 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-------------TEEEEE-------EEEEECCCCSSCE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC-------------Cccccc-------eEEEECCCCCCCC
Confidence 2344556889999 998665554 56788999986511 111000 0112233333 55
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEE
Q psy2685 206 VSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285 (992)
Q Consensus 206 V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~ 285 (992)
+..++++++|++.++...++.|.+||..+++. +..+..+...+.+
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-----------------------------------~~~~~~~~~~~~~ 272 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-----------------------------------KMRIRCPFEKPSN 272 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-----------------------------------SEEEECSSSCEEE
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-----------------------------------eEEEeCCCCCcee
Confidence 77899999999888877788888887654432 2222333457889
Q ss_pred EEEeCCCCEEEEEECC--CEEEEEe
Q psy2685 286 LVAHPTLNLFAAGHDA--GMVVFKF 308 (992)
Q Consensus 286 la~spdg~~Lasgsdd--giivw~l 308 (992)
++|+|+++.|.+++.+ ++..|+.
T Consensus 273 i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 273 LHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCeEEEEeC
Confidence 9999999966555544 5555554
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=5.6e-09 Score=125.05 Aligned_cols=326 Identities=11% Similarity=0.046 Sum_probs=202.3
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECC--CCeeEEEEecCCCCe
Q psy2685 61 NQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ--SRNCICVLTGHNHYV 138 (992)
Q Consensus 61 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~--t~~~i~~l~~h~~~V 138 (992)
|.+..+++...++.|.++|..+++.+.++... ..+..+.|+|+++++++++.|+.|.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 44456677778899999999999998887643 457799999999999999999999999995 78888877753 346
Q ss_pred EEEEEe----cCCCEEEEEEC-CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCC-CeEEEEEc
Q psy2685 139 MCAQFH----PTDDIVVSASL-DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYN-NVSCVLFH 212 (992)
Q Consensus 139 ~sl~fs----pdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~-~V~~v~fs 212 (992)
..++|+ |||+++++++. +++|.++|..+.+.. ......... ......|.. .+..+..+
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~-------------~~i~~~~~~---~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK-------------KIQSTRGMT---YDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-------------EEEECCEEC---TTTCCEESCCCEEEEEEC
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE-------------EEEeccccc---cccccccCCCceEEEEEc
Confidence 799999 69988877664 588888887654321 111110000 000001222 57778888
Q ss_pred CCCCE-EEEEeCCCeEEEEECCCCeeee--EeeccC---cccc---cCEE-EEEeCCCeEEEEECCCCeEEEEeec----
Q psy2685 213 PKSEV-IVSNAEDKSIRLWDMTKRTCLN--TFRREQ---ERFW---SEVI-VSNAEDKSIRLWDMTKRTCLNTFRR---- 278 (992)
Q Consensus 213 pdg~~-L~s~s~Dg~I~vwdl~~~~~l~--~~~~~~---~~~~---s~~l-~sgs~Dg~I~vwd~~t~~~v~~l~~---- 278 (992)
+++.. +++...+|.|.++|..+...+. .+.... ...+ +.++ ++...++.|.++|..+++.+..+..
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 87654 4555667999999998754322 222111 1112 3555 4555789999999999998777654
Q ss_pred -CCCCEEEEEEeCC-CCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCC-----ceEEEEeecCCC
Q psy2685 279 -EQERFWVLVAHPT-LNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSK-----DSVVMQLRGGGR 351 (992)
Q Consensus 279 -h~~~V~~la~spd-g~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~-----~~~v~~l~~~~~ 351 (992)
|.++-.. -++|+ +.+.+++.- .++.|.++|..+.+ -..+..++.. .
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~-------------------------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g 439 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHM-------------------------GDDSVALIGTDPEGHPDNAWKILDSFPAL-G 439 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBS-------------------------SSSEEEEEECCTTTCTTTBTSEEEEEECS-C
T ss_pred CCCcccee-eECCCCCcEEEeCCC-------------------------CCCeEEEecCCCCCCccccCEEEEEEecC-C
Confidence 2221111 25776 444444421 12334445554421 1223333321 1
Q ss_pred ccceeEEEccCCCEEEEEecCCcccc---CCeEEEEEeCCCcc---ccc-eecc--------CccccceEEEEecCCeEE
Q psy2685 352 IPAHSISYNATEHSILVTTRNANNFE---NSTYDLYMIPKEES---ERK-EVAD--------GKRSTGISAVWVARNRFA 416 (992)
Q Consensus 352 ~~I~~lafspdg~~lav~~~~~~~~~---~g~i~i~~l~~~~~---~~~-~~~~--------~~~~~~~s~~w~~~~~~a 416 (992)
.....+..+|+++++.+.... +.+ .+++.++++..... ... +... .....+..+.|.++++.+
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~--~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 517 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATL--NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEV 517 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTT--CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEE
T ss_pred CCCEEEEeCCCCCeEEEecCC--CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEE
Confidence 222457899999999887642 112 46899999876511 100 1111 113356778888888666
Q ss_pred EEE------cCCeEEEEEcCCcc
Q psy2685 417 VLD------RNHTILIKNLKNEY 433 (992)
Q Consensus 417 v~~------~~g~I~i~dl~~~~ 433 (992)
.+. .++.|.++|.++..
T Consensus 518 ~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 518 WFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEEECCTTSCCEEEEEETTTTE
T ss_pred EEEeecCCCCCCcEEEEECCCce
Confidence 554 36889999887654
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.29 E-value=5.6e-09 Score=118.70 Aligned_cols=255 Identities=10% Similarity=-0.066 Sum_probs=167.5
Q ss_pred EEcCCCCEEEEEEc--CC---eEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEc
Q psy2685 16 SFHPKRPWILSSLH--NG---VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----------DDYKIKVWNY 80 (992)
Q Consensus 16 afspdg~~Lasg~~--dg---~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~VWd~ 80 (992)
...|+++++++... .+ .|.+||..+++.+.++.....+ .+++||||++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44578888777653 22 8899999999998888765555 999999999998875 3678999999
Q ss_pred CCCeEEEEEccC-------CCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEE-EecCCCCeEEEEEecCC-CE
Q psy2685 81 KQRKCIFTLLGH-------LDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICV-LTGHNHYVMCAQFHPTD-DI 149 (992)
Q Consensus 81 ~t~~~~~~l~~h-------~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~-l~~h~~~V~sl~fspdg-~~ 149 (992)
.+.+.+..+.-. ......+.|+|+|++|++++. ++.|.++| .+++.+.. +... . ++.+.|++ +.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCce
Confidence 998887766422 133568999999999998874 57899999 99988777 5422 2 24555665 45
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRL 229 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~v 229 (992)
+++.+.||.+.++|. ..+. +...... ..+.+...-.....+.+++..++..+.++.+.+
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~-------------~~~~~~~-------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~v 238 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGA-------------AGAGLVG-------AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ 238 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcE-------------EEEEecc-------ccccCCcceeecceeEecCCEEEEEcCCceEEE
Confidence 677778999999998 4321 1000000 000111111223456666555444456788999
Q ss_pred EECCCCe--eeeEeeccC----------cc-----c--ccCEEEEEe----------CCCeEEEEECCCCeEEEEeecCC
Q psy2685 230 WDMTKRT--CLNTFRREQ----------ER-----F--WSEVIVSNA----------EDKSIRLWDMTKRTCLNTFRREQ 280 (992)
Q Consensus 230 wdl~~~~--~l~~~~~~~----------~~-----~--~s~~l~sgs----------~Dg~I~vwd~~t~~~v~~l~~h~ 280 (992)
.|+.++. .+..+.... .. + .+..+.... .++.|.++|..+++.+.++...
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g- 317 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG- 317 (373)
T ss_pred EeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-
Confidence 9987542 222322110 00 0 013333332 2457999999999999888543
Q ss_pred CCEEEEEEeCCCC-EEEEEE
Q psy2685 281 ERFWVLVAHPTLN-LFAAGH 299 (992)
Q Consensus 281 ~~V~~la~spdg~-~Lasgs 299 (992)
...++++|+|||+ ++.++.
T Consensus 318 ~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 318 HDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred CCcCeEEECCCCCeEEEEEc
Confidence 3578999999999 666654
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.29 E-value=2.3e-08 Score=108.25 Aligned_cols=283 Identities=8% Similarity=-0.027 Sum_probs=179.6
Q ss_pred ccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE-ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q psy2685 48 DEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL-LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN 126 (992)
Q Consensus 48 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~ 126 (992)
..+...+.+++++++|..+++...++.|.+||.. ++..... ..+...+.++++.+++.+.++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3455689999999999977766668899999988 5543322 2345779999999999977777778899999976 33
Q ss_pred e-EEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCC
Q psy2685 127 C-ICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNN 205 (992)
Q Consensus 127 ~-i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~ 205 (992)
. ...+......+.+++++|++.++++...++.|..||..+ .+..+ ....+...
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g---------------~~~~~-----------~~~~~~~~ 142 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDG---------------KIREY-----------ELPNKGSY 142 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC---------------CEEEE-----------ECSSTTCC
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCC---------------CEEEe-----------cCCCCCCC
Confidence 2 222223456789999999998888777788888888732 11111 12223456
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEE
Q psy2685 206 VSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWV 285 (992)
Q Consensus 206 V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~ 285 (992)
+..+.++|+|.+.++...++.|..||. +++... +. .......+.+
T Consensus 143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-------------------------~~---------~~~~~~~~~~ 187 (299)
T 2z2n_A 143 PSFITLGSDNALWFTENQNNAIGRITE-SGDITE-------------------------FK---------IPTPASGPVG 187 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-------------------------EE---------CSSTTCCEEE
T ss_pred CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-------------------------ee---------CCCCCCccee
Confidence 889999999988887766788888876 433211 11 1123345778
Q ss_pred EEEeCCCCEEEEEEC-CCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCC
Q psy2685 286 LVAHPTLNLFAAGHD-AGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH 364 (992)
Q Consensus 286 la~spdg~~Lasgsd-dgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~ 364 (992)
++++++|++.++... +++.+|+ . ++... ..... .+...+..++++++|+
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~---------------------------~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRIT---------------------------T-SGEIT-EFKIP-TPNARPHAITAGAGID 237 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEEC---------------------------T-TCCEE-EEECS-STTCCEEEEEECSTTC
T ss_pred EEECCCCCEEEEccCCceEEEEC---------------------------C-CCcEE-EEECC-CCCCCceeEEECCCCC
Confidence 999999987666543 3333333 3 22211 11111 2345678999999998
Q ss_pred EEEEEecCCccccCCeEEEEEeCCCccccceeccCccccceEEEEecCCeEEEEEcCCeEEEEEcCCc
Q psy2685 365 SILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNE 432 (992)
Q Consensus 365 ~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~~av~~~~g~I~i~dl~~~ 432 (992)
..++... ++.+..|+.. ... ...........+..+.+ .++.+.+.+.++.+..++.+++
T Consensus 238 l~v~~~~------~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 238 LWFTEWG------ANKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp EEEEETT------TTEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred EEEeccC------CceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 5554422 3567777652 111 11111222334556666 7888888877777777776543
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.29 E-value=5.7e-10 Score=124.47 Aligned_cols=234 Identities=10% Similarity=0.002 Sum_probs=160.9
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q psy2685 11 RVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 90 (992)
....+.+.. +...++...++.|.+||..+++.+.++. .......+++++++..+++...++.|.+||..+++....+.
T Consensus 45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 456777743 4444455557999999999999988885 44678999999998544444478999999999999887765
Q ss_pred cCC-----CCEEEEEEecCCCEEEEEE--CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECC-------
Q psy2685 91 GHL-----DYIRTTFFHHEYPWILSAS--DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD------- 156 (992)
Q Consensus 91 ~h~-----~~V~~i~fspd~~~L~sgs--~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------- 156 (992)
... .....+++ . +..+++++ .++.|.++|..+++.+..+... .....+.++|+|++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccc
Confidence 333 14556777 3 44555554 4889999999999988877643 345678899999877666544
Q ss_pred ---CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy2685 157 ---QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH-YNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232 (992)
Q Consensus 157 ---g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h-~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl 232 (992)
+.|.++|..+.+ ....+... ......++|+|+++.+.++.. .|.+||.
T Consensus 200 ~~~~~v~~id~~t~~--------------------------v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 200 YEAPSLYRIDAETFT--------------------------VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp BCCCEEEEEETTTTE--------------------------EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred cCCceEEEEECCCCe--------------------------EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 567777765422 11222211 235789999999998887765 8999999
Q ss_pred CCCeeeeE--eeccCccc--------ccCEEEEE----eCCCeEEEEECCCCeEEEEeec
Q psy2685 233 TKRTCLNT--FRREQERF--------WSEVIVSN----AEDKSIRLWDMTKRTCLNTFRR 278 (992)
Q Consensus 233 ~~~~~l~~--~~~~~~~~--------~s~~l~sg----s~Dg~I~vwd~~t~~~v~~l~~ 278 (992)
.+++.... +....... .+.+.++. ..++.|.+||.. ++.+.++..
T Consensus 252 ~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 88765321 11101111 12556666 578889999987 887777653
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1.1e-09 Score=123.88 Aligned_cols=271 Identities=10% Similarity=0.008 Sum_probs=181.8
Q ss_pred EEEcCCCCEEEEEEc-----CCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE----------CCCeEEEEE
Q psy2685 15 LSFHPKRPWILSSLH-----NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----------DDYKIKVWN 79 (992)
Q Consensus 15 iafspdg~~Lasg~~-----dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~VWd 79 (992)
....|+++++++... ++.|.+.|..+++.+.++.....+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789999988865 579999999999999999766666 4 99999999887765 367899999
Q ss_pred cCCCeEEEEEccCC-------CCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEE
Q psy2685 80 YKQRKCIFTLLGHL-------DYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIV 150 (992)
Q Consensus 80 ~~t~~~~~~l~~h~-------~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L 150 (992)
..+++.+.++.-.. .....+.|+|||++++++.. ++.|.++|..+++.+.++..... ...+....+.+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCcee
Confidence 99999888774321 24567999999999988874 68999999999999988863221 11222223455
Q ss_pred EEEECCCeEEEEECCC-Ccc-----ccccCC------------------cccCCCeEEEEEccCCcceEEEEEe------
Q psy2685 151 VSASLDQTIRVWDISG-LRK-----KNVAPG------------------MGADDRQIKLWRMNDSKAWEVDIFR------ 200 (992)
Q Consensus 151 ~sgs~Dg~I~iwd~~~-~~~-----~~~~~~------------------~~~~d~~I~iwd~~~~~~~~i~~l~------ 200 (992)
++.+.||.+.+.++.. .+. ....+. ..+.++.+.+.|..+........+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccc
Confidence 5666667666666654 221 000000 1123456677777654421111111
Q ss_pred ----ccCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeeEeeccCccc------cc-CEEEE-EeC
Q psy2685 201 ----GHYNNVSCVLFHPKSEVIVSNAE----------DKSIRLWDMTKRTCLNTFRREQERF------WS-EVIVS-NAE 258 (992)
Q Consensus 201 ----~h~~~V~~v~fspdg~~L~s~s~----------Dg~I~vwdl~~~~~l~~~~~~~~~~------~s-~~l~s-gs~ 258 (992)
-..+....+.++|+++.+..... .+.|.++|+.+++.+..+....... .+ ..+++ ...
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC
Confidence 01123334677898888777643 2579999999999988876543221 12 35555 456
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCEEEEEEeCC
Q psy2685 259 DKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT 291 (992)
Q Consensus 259 Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spd 291 (992)
++.|.++|..+++.+.++..... -..+.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQLGH-GPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence 89999999999999998864432 234566655
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=1.5e-09 Score=125.08 Aligned_cols=212 Identities=8% Similarity=0.027 Sum_probs=142.4
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCC--eEEEEEcCCCeEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDY--KIKVWNYKQRKCIF 87 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~VWd~~t~~~~~ 87 (992)
.....++|+|++.++++...++.|++||..++...........+ . ++|+|+++.|+++..++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46889999999997777767799999998888766655443333 3 99999999998888766 79999987665433
Q ss_pred EE----ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE----EecCCCCe-E-EEEEecC-CCEEEEEECC
Q psy2685 88 TL----LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV----LTGHNHYV-M-CAQFHPT-DDIVVSASLD 156 (992)
Q Consensus 88 ~l----~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~----l~~h~~~V-~-sl~fspd-g~~L~sgs~D 156 (992)
.+ ......+.+++++|++..|+++..++.|..||..++..... ..++...- . .++|+|+ +.++++.+.+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456678999999655666677788999999987764322 22222222 3 8999995 5566666677
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEcc-CCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMN-DSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMTK 234 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~-~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~~ 234 (992)
+.|+.|+..+... .+.... ......-......-.....++++|+|+++++-+ .++.|+.|+..+
T Consensus 289 ~~I~~~~~~g~~~--------------~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 289 SSVYKITPDGECE--------------WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TEEEEECTTCCEE--------------EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CEEEEEecCCCEE--------------EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 8899888764210 000000 000000000001124578899999999888888 889999999777
Q ss_pred Cee
Q psy2685 235 RTC 237 (992)
Q Consensus 235 ~~~ 237 (992)
+..
T Consensus 355 G~v 357 (409)
T 3hrp_A 355 GYV 357 (409)
T ss_dssp TEE
T ss_pred CEE
Confidence 653
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.25 E-value=1.1e-09 Score=121.97 Aligned_cols=236 Identities=10% Similarity=0.012 Sum_probs=160.6
Q ss_pred CCeEEEEEcCCCeEEEEec------cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEec
Q psy2685 30 NGVIQLWDYRMNTLLEKFD------EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 103 (992)
Q Consensus 30 dg~I~IWd~~~g~~~~~~~------~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fsp 103 (992)
++.|.+||..+++....+. .......++.++. +...++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 7899999999998765441 1224467888853 4455556668999999999999988885 346789999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeEEEEecCC-----CCeEEEEEecCCCEEEEEE--CCCeEEEEECCCCccccccCCc
Q psy2685 104 EYPWILSASDDQTIRIWNWQSRNCICVLTGHN-----HYVMCAQFHPTDDIVVSAS--LDQTIRVWDISGLRKKNVAPGM 176 (992)
Q Consensus 104 d~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~-----~~V~sl~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~ 176 (992)
++..+++...++.|.+||..+++....+.... .....+++ . +..+.+++ .+++|.++|..+.+.
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~------- 164 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV------- 164 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE-------
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE-------
Confidence 98544444489999999999999887776433 14556677 3 44444444 478888888875321
Q ss_pred ccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCeeeeEeeccCc
Q psy2685 177 GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED----------KSIRLWDMTKRTCLNTFRREQE 246 (992)
Q Consensus 177 ~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~D----------g~I~vwdl~~~~~l~~~~~~~~ 246 (992)
...+.. ......+.++|+|++++++..+ +.|.++|..+++....+.....
T Consensus 165 -------------------~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 165 -------------------VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp -------------------EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred -------------------EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 112221 2234578899999977776655 7899999999988777654211
Q ss_pred -----ccc---cCEEEEEeCCCeEEEEECCCCeEEEE--eecCCCCEEEEEEeC-CCCEEEEE
Q psy2685 247 -----RFW---SEVIVSNAEDKSIRLWDMTKRTCLNT--FRREQERFWVLVAHP-TLNLFAAG 298 (992)
Q Consensus 247 -----~~~---s~~l~sgs~Dg~I~vwd~~t~~~v~~--l~~h~~~V~~la~sp-dg~~Lasg 298 (992)
... +..+.++.. .|.+||..+++.... +.........++++| ++.+.++.
T Consensus 225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 111 255555544 899999988775321 122245688999999 56666664
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=7.1e-11 Score=133.98 Aligned_cols=174 Identities=6% Similarity=0.010 Sum_probs=135.3
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-----------EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q psy2685 11 RVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT-----------LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~-----------~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd 79 (992)
++..+++++.+.++++|+.++ +.+|+..+.. ..... .+.+ |+.++| ++++|+++ .+|.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 5669865332 11222 3556 999999 88999998 889999999
Q ss_pred cCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeE
Q psy2685 80 YKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTI 159 (992)
Q Consensus 80 ~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I 159 (992)
+.+.........|..++.++.+.+. .+++++.||.+.+||++++.... +...|+|++|||+| ++.|..||++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9876655666778888888877654 39999999999999999877653 34689999999999 7889999999
Q ss_pred EEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEE------e---ccCCCeEEEEEcCCCCEEEEEe
Q psy2685 160 RVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF------R---GHYNNVSCVLFHPKSEVIVSNA 222 (992)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l------~---~h~~~V~~v~fspdg~~L~s~s 222 (992)
++|+..+.... ...++ . +|...|.++.|.+++.++++-+
T Consensus 185 ~~~~~~~~~~~------------------------~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEME------------------------KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEE------------------------EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCcccc------------------------ccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99988664310 01122 2 3678899999999998888644
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.25 E-value=1.5e-10 Score=124.08 Aligned_cols=199 Identities=8% Similarity=0.031 Sum_probs=146.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec-cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD-EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~ 88 (992)
..+.+++++|++..+++.. ++.|.+||...+.. ..+. .....+.+++++|+|..+++...++.|.+|+..+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 5678999999998555554 88999999765543 3333 2335789999999999777777788999998665543332
Q ss_pred EccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q psy2685 89 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR 168 (992)
Q Consensus 89 l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~ 168 (992)
.......+.++++++++.++++...++.|.+||..++........+...+.+++++++|.++++...++.|.+||..+..
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 22333467889999999977777778899999988766544333444678999999999877777778889999876532
Q ss_pred cccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy2685 169 KKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT 236 (992)
Q Consensus 169 ~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~ 236 (992)
. ......+...+.+++++|+|+++++.+.++.|++++....+
T Consensus 225 ~--------------------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 225 S--------------------------TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp C--------------------------EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred c--------------------------eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 01111233568899999999988998999999999887543
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=7e-09 Score=113.69 Aligned_cols=235 Identities=8% Similarity=0.042 Sum_probs=151.0
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q psy2685 7 TKSARVKGLSFHPKRP-WILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKC 85 (992)
Q Consensus 7 ~H~~~V~~iafspdg~-~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~ 85 (992)
.+..-.-+..|+|++. .+++...++.|..||..+++. ..+. ....+.+++++|+|+++++ . ++.|.+||..+++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3444567899999655 555656689999999887765 3332 4578999999999995544 4 56899999988875
Q ss_pred EEEEcc----CCCCEEEEEEecCCCEEEEEECC---------CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEE-
Q psy2685 86 IFTLLG----HLDYIRTTFFHHEYPWILSASDD---------QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVV- 151 (992)
Q Consensus 86 ~~~l~~----h~~~V~~i~fspd~~~L~sgs~D---------g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~- 151 (992)
...... ....+..++++|+|.+.++...+ ..-.+|.+........+..+......++|+|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 443322 12357889999999966654321 2334555443222233333445578999999998665
Q ss_pred EEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy2685 152 SASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231 (992)
Q Consensus 152 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwd 231 (992)
+.+.++.|..||+.... +.+.- ......+..+.+....++++++|++.++...++.|.+||
T Consensus 166 ~~~~~~~i~~~~~d~~~------------G~~~~-------~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQT------------GQISN-------RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EEGGGTEEEEEEECTTT------------CCEEE-------EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred ecCCCCcEEEEeccCCC------------CcccC-------cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 45557888888864111 11100 001222233345677889999998777776677777775
Q ss_pred CCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEe-CCCCEEEEEE
Q psy2685 232 MTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAH-PTLNLFAAGH 299 (992)
Q Consensus 232 l~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~s-pdg~~Lasgs 299 (992)
..+ ++.+..+..+...+++++|. |+++.|.+++
T Consensus 227 ~~t-----------------------------------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 227 PVT-----------------------------------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TTT-----------------------------------CCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCC-----------------------------------ceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 543 44455555555678999998 8887665544
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=1.4e-09 Score=135.29 Aligned_cols=282 Identities=11% Similarity=-0.002 Sum_probs=162.6
Q ss_pred cCCCCEEEEEEcCCe---EEEEE--cC---CCeEEEEe------ccCCCCEEEEEEecCCCEEEEEECC-----CeEEEE
Q psy2685 18 HPKRPWILSSLHNGV---IQLWD--YR---MNTLLEKF------DEHEGPVRGICFHNQQPIFVSGGDD-----YKIKVW 78 (992)
Q Consensus 18 spdg~~Lasg~~dg~---I~IWd--~~---~g~~~~~~------~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~VW 78 (992)
+|+|++++....++. -.+|- .. .++....+ .+|...+.+++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999887765433 44554 33 34332222 1233468899999999999887654 369999
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCe--------------EEEEECCCCee--EEEEe--cCCCCeEE
Q psy2685 79 NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQT--------------IRIWNWQSRNC--ICVLT--GHNHYVMC 140 (992)
Q Consensus 79 d~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~--------------I~vwdl~t~~~--i~~l~--~h~~~V~s 140 (992)
|+.+++.+... .+...+..++|+|| +.|+.++.++. |++|++.++.. ...+. .+...+.+
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 99999875432 12212357899999 98888877654 89999877652 22333 33346899
Q ss_pred EEEecCCCEEEEEECCC-----eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC
Q psy2685 141 AQFHPTDDIVVSASLDQ-----TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS 215 (992)
Q Consensus 141 l~fspdg~~L~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg 215 (992)
+.|+|||++++..+.++ .|.+||+. ++.......+..+...+... ++|+|
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~------------------------~~~~~~~~~l~~~~~~~~~~-~~~dg 327 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVT------------------------NGKIGPVTALIPDLKAQWDF-VDGVG 327 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEE------------------------TTEECCCEEEECSSSSCEEE-EEEET
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECC------------------------CCCCcccEEecCCCCceEEE-EeccC
Confidence 99999999888877554 45555543 33100023334444444444 34788
Q ss_pred CEEEEEeCCC----eEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCC
Q psy2685 216 EVIVSNAEDK----SIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT 291 (992)
Q Consensus 216 ~~L~s~s~Dg----~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spd 291 (992)
+.|+..+.++ .|.+||+.++. +.....+..+...+..++|+ +
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~---------------------------------~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST---------------------------------PRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS---------------------------------CEEEEEECCCSSEEEEEEEE-B
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc---------------------------------cccEEEecCCCCeEEEEEEE-C
Confidence 8777766532 35555443210 12222223333345566776 5
Q ss_pred CCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEec
Q psy2685 292 LNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR 371 (992)
Q Consensus 292 g~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~ 371 (992)
+.++++...++... +.++++. +. ....+...+...+..++++|++..++....
T Consensus 374 ~~lv~~~~~dg~~~------------------------l~~~~~~-g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 374 NRLFASYIHDAKSQ------------------------VLAFDLD-GK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp TEEEEEEEETTEEE------------------------EEEEETT-SC--EEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred CEEEEEEEECCEEE------------------------EEEEeCC-CC--ceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 55666655554321 1123332 22 122232223456788999999987765543
Q ss_pred CCccccCCeEEEEEeCCC
Q psy2685 372 NANNFENSTYDLYMIPKE 389 (992)
Q Consensus 372 ~~~~~~~g~i~i~~l~~~ 389 (992)
+ ....+.+..|++...
T Consensus 427 s--~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 427 S--FTQPATVLALDPATA 442 (741)
T ss_dssp E--TTEEEEEEEEETTTT
T ss_pred C--CCCCCEEEEEECCCC
Confidence 2 134567888877543
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.22 E-value=3e-08 Score=112.69 Aligned_cols=283 Identities=10% Similarity=-0.037 Sum_probs=165.2
Q ss_pred EEecCCCEEEEEEC--CC---eEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEC
Q psy2685 58 CFHNQQPIFVSGGD--DY---KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS----------DDQTIRIWNW 122 (992)
Q Consensus 58 ~fspdg~~Lasgs~--Dg---~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs----------~Dg~I~vwdl 122 (992)
...|+++++++... .+ .|.++|..+++.+..+.....+ .++++||+++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34477777766543 22 8899999999988887654444 999999999998886 3678999999
Q ss_pred CCCeeEEEEecC-------CCCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcc
Q psy2685 123 QSRNCICVLTGH-------NHYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKA 193 (992)
Q Consensus 123 ~t~~~i~~l~~h-------~~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~ 193 (992)
.+.+.+..+... ......+.|+|||+++++++. ++.|.++| .+.+.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~------------------------ 159 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS------------------------ 159 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE------------------------
Confidence 988887766532 133568899999999998874 47788888 65431
Q ss_pred eEEEE-EeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEee-----ccCccc--------ccCEEEEEeC
Q psy2685 194 WEVDI-FRGHYNNVSCVLFHPKS-EVIVSNAEDKSIRLWDMTKRTCLNTFR-----REQERF--------WSEVIVSNAE 258 (992)
Q Consensus 194 ~~i~~-l~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~vwdl~~~~~l~~~~-----~~~~~~--------~s~~l~sgs~ 258 (992)
+.. +. .. .|+.+.|++ ..+++.+.||.+.++|. +++...... ...... .+..++..+.
T Consensus 160 --~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 232 (373)
T 2mad_H 160 --DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY 232 (373)
T ss_pred --EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC
Confidence 111 11 11 124445554 45667778899999999 776653322 111110 0122333346
Q ss_pred CCeEEEEECCCCe--EEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEee
Q psy2685 259 DKSIRLWDMTKRT--CLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLT 336 (992)
Q Consensus 259 Dg~I~vwd~~t~~--~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~ 336 (992)
++.+.+.|+.+.. .+..+...........|.|.+...+..+.++-.+|-....... ..| -...+.+.++|..
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~-~~~-----~~~~~~V~VID~~ 306 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA-WKL-----HAAAKEVTSVTGL 306 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc-ccc-----cCCCCeEEEEECC
Confidence 7789999987653 2333322222222233444443322222222111110000000 000 0013467778887
Q ss_pred CCCceEEEEeecCCCccceeEEEccCCC-EEEEEecCCccccCCeEEEEEeCCC
Q psy2685 337 NSKDSVVMQLRGGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 337 ~~~~~~v~~l~~~~~~~I~~lafspdg~-~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
+.+....+.+ ...++.++|+|||+ .+.++.. .++.+.+++....
T Consensus 307 t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~-----~~~~V~ViD~~t~ 351 (373)
T 2mad_H 307 VGQTSSQISL----GHDVDAISVAQDGGPDLYALSA-----GTEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcC-----CCCeEEEEECCCC
Confidence 7665444433 23579999999999 5555432 2478888887654
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.20 E-value=3.2e-09 Score=116.86 Aligned_cols=237 Identities=7% Similarity=-0.028 Sum_probs=154.5
Q ss_pred EEeecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 3 TKFETKSARVKGLSFHPKRP-WILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~-~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..+..+.....+..|+|+++ +++++..++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|.+|+..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 45566667788999999998 5566667899999996 555 34555567789999999999966665556889999976
Q ss_pred CCeEEEEEccC----CCCEEEEEEecCCCEEEE----EEC-------------CCeEEEEECCCCeeEEEEecCCCCeEE
Q psy2685 82 QRKCIFTLLGH----LDYIRTTFFHHEYPWILS----ASD-------------DQTIRIWNWQSRNCICVLTGHNHYVMC 140 (992)
Q Consensus 82 t~~~~~~l~~h----~~~V~~i~fspd~~~L~s----gs~-------------Dg~I~vwdl~t~~~i~~l~~h~~~V~s 140 (992)
++........ ...+..++++|+|.+.++ |+. .+.|..||..+++..... .......
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g 192 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG 192 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence 5533222111 134678999999998776 332 256888887666654433 4456788
Q ss_pred EEEecCCCEEEEEECC------CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEE-EeccCCCeEEEEEcC
Q psy2685 141 AQFHPTDDIVVSASLD------QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDI-FRGHYNNVSCVLFHP 213 (992)
Q Consensus 141 l~fspdg~~L~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~-l~~h~~~V~~v~fsp 213 (992)
++|+|+++.++.+... +.|.+|++.+... ..... .....+....+.+++
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l------------------------~~~~~~~~~~~~~pdgi~~d~ 248 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL------------------------HDRRHFASVPDGLPDGFCVDR 248 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEE------------------------EEEEEEECCSSSCCCSEEECT
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc------------------------cCCeEEEECCCCCCCeEEECC
Confidence 9999999988777665 6777777654210 00011 111223345577788
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCC
Q psy2685 214 KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLN 293 (992)
Q Consensus 214 dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~ 293 (992)
+|++.++ +.+ .|.+|+.. ++.+..+..+. .+.+++|+|+++
T Consensus 249 ~G~lwv~-~~~-gv~~~~~~------------------------------------g~~~~~~~~~~-~~~~~~f~~d~~ 289 (305)
T 3dr2_A 249 GGWLWSS-SGT-GVCVFDSD------------------------------------GQLLGHIPTPG-TASNCTFDQAQQ 289 (305)
T ss_dssp TSCEEEC-CSS-EEEEECTT------------------------------------SCEEEEEECSS-CCCEEEECTTSC
T ss_pred CCCEEEe-cCC-cEEEECCC------------------------------------CCEEEEEECCC-ceeEEEEeCCCC
Confidence 8874443 333 36666542 33333443333 477889999998
Q ss_pred EEEEEECCCEEEEE
Q psy2685 294 LFAAGHDAGMVVFK 307 (992)
Q Consensus 294 ~Lasgsddgiivw~ 307 (992)
.|.+++.+++..++
T Consensus 290 ~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 290 RLFITGGPCLWMLP 303 (305)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEcCCeEEEEE
Confidence 88888777765543
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.13 E-value=7e-09 Score=119.17 Aligned_cols=252 Identities=10% Similarity=0.039 Sum_probs=168.1
Q ss_pred CCCCEEEEEEcC-----CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEcCCC
Q psy2685 19 PKRPWILSSLHN-----GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----------DDYKIKVWNYKQR 83 (992)
Q Consensus 19 pdg~~Lasg~~d-----g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~VWd~~t~ 83 (992)
|+++.++++... +.|.++|..+++.+.++..-..+ .++++|||++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467777776653 69999999999999999866666 899999999888775 4679999999999
Q ss_pred eEEEEEccC-------CCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCC-CEEEEE
Q psy2685 84 KCIFTLLGH-------LDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSA 153 (992)
Q Consensus 84 ~~~~~l~~h-------~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg-~~L~sg 153 (992)
+.+..+.-. ......+.|+|||++++++.. ++.|.+.|..+++.+.++..... ....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 988876421 233567899999999999874 58999999999998888764221 1222322 344445
Q ss_pred ECCCeEEEEECCCCcccc--------------ccC----C-----cccCCCeEEEEEccCCcceEEEEEec---------
Q psy2685 154 SLDQTIRVWDISGLRKKN--------------VAP----G-----MGADDRQIKLWRMNDSKAWEVDIFRG--------- 201 (992)
Q Consensus 154 s~Dg~I~iwd~~~~~~~~--------------~~~----~-----~~~~d~~I~iwd~~~~~~~~i~~l~~--------- 201 (992)
+.||.+.+.+....+... ... . .....+.+.+.|...........+.-
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 555555555552222110 000 0 11234567777765443211111110
Q ss_pred -cCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeeEeeccCccc---c---cC-EEEEEe-CCCeE
Q psy2685 202 -HYNNVSCVLFHPKSEVIVSNAE----------DKSIRLWDMTKRTCLNTFRREQERF---W---SE-VIVSNA-EDKSI 262 (992)
Q Consensus 202 -h~~~V~~v~fspdg~~L~s~s~----------Dg~I~vwdl~~~~~l~~~~~~~~~~---~---s~-~l~sgs-~Dg~I 262 (992)
.......+.++|+++.+.+... ++.|.++|..+++.+.++.....+. + +. .+++.. .++.|
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeE
Confidence 0111223689999887766542 3579999999999988886433211 1 35 677766 69999
Q ss_pred EEEECCCCeEEEEe
Q psy2685 263 RLWDMTKRTCLNTF 276 (992)
Q Consensus 263 ~vwd~~t~~~v~~l 276 (992)
.++|+.+++.+.++
T Consensus 396 sVID~~t~kvv~tI 409 (426)
T 3c75_H 396 HIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 99999999999887
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=7.7e-08 Score=106.97 Aligned_cols=225 Identities=6% Similarity=-0.057 Sum_probs=145.2
Q ss_pred CEEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 11 RVKGLSFHPKRP-WILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 11 ~V~~iafspdg~-~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
-..+..|+|++. .+++...++.|..||..+++.. .+. ....+.+++|+|+|+++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 457889999855 4555556889999998877543 333 35689999999999866654 44 5999999888754332
Q ss_pred cc---C-CCCEEEEEEecCCCEEEEEEC------CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEE-ECCCe
Q psy2685 90 LG---H-LDYIRTTFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSA-SLDQT 158 (992)
Q Consensus 90 ~~---h-~~~V~~i~fspd~~~L~sgs~------Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~Dg~ 158 (992)
.. . ...+.++.++|+|.+.++... .+.|..++ +++... +..+......++|+|+++.++.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1 235889999999997665432 24566666 455433 33334457789999999876555 45688
Q ss_pred EEEEECC--CC-ccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy2685 159 IRVWDIS--GL-RKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKR 235 (992)
Q Consensus 159 I~iwd~~--~~-~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~ 235 (992)
|.+||.. ++ ... ..+ ....+.........+.++++|.+.++...++.|.+||. +
T Consensus 203 I~~~d~~~~~Gl~~~-----------~~~----------~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~- 259 (326)
T 2ghs_A 203 LMRVPLDARTGLPTG-----------KAE----------VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D- 259 (326)
T ss_dssp EEEEEBCTTTCCBSS-----------CCE----------EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T-
T ss_pred EEEEEcccccCCccc-----------Cce----------EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-C-
Confidence 9999875 22 110 000 11112223344567888888887776656677777765 2
Q ss_pred eeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEe-CCCCEEEEEE
Q psy2685 236 TCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAH-PTLNLFAAGH 299 (992)
Q Consensus 236 ~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~s-pdg~~Lasgs 299 (992)
++.+..+..+...+++++|+ |++..|.+++
T Consensus 260 ----------------------------------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 260 ----------------------------------GNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ----------------------------------CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ----------------------------------CCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 23333444445568999998 8887665444
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.13 E-value=4.8e-08 Score=110.41 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=171.3
Q ss_pred EEEecCCCEEEEEEC-----CCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEE----------CCCeEEEEE
Q psy2685 57 ICFHNQQPIFVSGGD-----DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS----------DDQTIRIWN 121 (992)
Q Consensus 57 l~fspdg~~Lasgs~-----Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs----------~Dg~I~vwd 121 (992)
....|+++++++... ++.|.+.|..+++.+.++.....+ . +.++|+++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789998888765 679999999999999888765555 4 99999999887765 367899999
Q ss_pred CCCCeeEEEEecCC-------CCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCc
Q psy2685 122 WQSRNCICVLTGHN-------HYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSK 192 (992)
Q Consensus 122 l~t~~~i~~l~~h~-------~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~ 192 (992)
..+++.+.++.... .....+.|+|||++++++.. ++.|.++|..+.+.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v----------------------- 172 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF----------------------- 172 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-----------------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-----------------------
Confidence 99999888875321 24567899999999888864 68899999877532
Q ss_pred ceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeeEeec----cCcccc--------cCEEEEEeCC
Q psy2685 193 AWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK-RTCLNTFRR----EQERFW--------SEVIVSNAED 259 (992)
Q Consensus 193 ~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~-~~~l~~~~~----~~~~~~--------s~~l~sgs~D 259 (992)
+..+... + . ...+....+.+++.+.||.+.+.++.+ ++...+... ...... ...++..+.+
T Consensus 173 ---v~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~ 246 (386)
T 3sjl_D 173 ---KRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 246 (386)
T ss_dssp ---EEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT
T ss_pred ---EEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCC
Confidence 1112110 0 0 111222334556667777777777765 443221111 111111 1234446668
Q ss_pred CeEEEEECCCCe--EEEEeec----------CCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeC
Q psy2685 260 KSIRLWDMTKRT--CLNTFRR----------EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKE 327 (992)
Q Consensus 260 g~I~vwd~~t~~--~v~~l~~----------h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~ 327 (992)
|.|.+.|+.+.. .+..+.- ..+....++++|+++.+.+...++- . .+.+ ...
T Consensus 247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~---~-~~hk------------~~~ 310 (386)
T 3sjl_D 247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD---E-WRHK------------TAS 310 (386)
T ss_dssp SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC---T-TCTT------------SCE
T ss_pred CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc---c-cccC------------CCC
Confidence 999999987654 2222210 0112223556666665544321000 0 0000 012
Q ss_pred CeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCC-EEEEEecCCccccCCeEEEEEeCCC
Q psy2685 328 RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYMIPKE 389 (992)
Q Consensus 328 ~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~-~lav~~~~~~~~~~g~i~i~~l~~~ 389 (992)
+.+.+.|+.+.+....+.+. .++++++++||++ .+.++.. .++.+.+++....
T Consensus 311 ~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~-----~~~~VsViD~~t~ 364 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALST-----GDKTLYIHDAESG 364 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEET-----TTTEEEEEETTTC
T ss_pred CEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcC-----CCCeEEEEECCCC
Confidence 45667888877766655552 3678999999997 5555443 3578888887654
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.12 E-value=7.6e-09 Score=116.00 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=158.3
Q ss_pred CCEEEEEEcCCCCEEEEEE--cCCeEEEEEcCCCeEEEEec-------cCCCCEEEEEEecCCCEEEEEEC-----CCeE
Q psy2685 10 ARVKGLSFHPKRPWILSSL--HNGVIQLWDYRMNTLLEKFD-------EHEGPVRGICFHNQQPIFVSGGD-----DYKI 75 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~--~dg~I~IWd~~~g~~~~~~~-------~h~~~V~~l~fspdg~~Lasgs~-----Dg~I 75 (992)
..+..++++|+|+.+++.. .++.++||.+.+++. ..+. .|-..+.+++++++|+++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6799999999999888764 234355565546653 3332 24467999999999876555433 5799
Q ss_pred EEEEcCCCeEEEEEccC------CCCEEEEEEecCCCEE-EEEE---CCCeEEEEECCCCeeEEEEecCCCCeE-EEEEe
Q psy2685 76 KVWNYKQRKCIFTLLGH------LDYIRTTFFHHEYPWI-LSAS---DDQTIRIWNWQSRNCICVLTGHNHYVM-CAQFH 144 (992)
Q Consensus 76 ~VWd~~t~~~~~~l~~h------~~~V~~i~fspd~~~L-~sgs---~Dg~I~vwdl~t~~~i~~l~~h~~~V~-sl~fs 144 (992)
.+||..+++.+..+..+ ...+..+++++++..+ ++.+ .++.|.+||+.+++....+.+|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877766432 2356899999865554 4444 578999999998887766655432110 13344
Q ss_pred cCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q psy2685 145 PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED 224 (992)
Q Consensus 145 pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~D 224 (992)
+++..+.+.+.+|.+..|. ..+..++|+|+|+.|+++..+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~----------------------------------------~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH----------------------------------------LGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp ETTEECBEECTTSCEECCC----------------------------------------CCEEEEEECTTSCEEEEEESS
T ss_pred ECCEEEEeccCCCceecee----------------------------------------cccceeEeccCCCEEEEEeCC
Confidence 4555555555565544332 124678999999888777766
Q ss_pred C-eEEEEECC---CCe-----e---eeEe--eccCccc----ccCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCEEE
Q psy2685 225 K-SIRLWDMT---KRT-----C---LNTF--RREQERF----WSEVIVSNAEDKSIRLWDMTKRTCLNTFRR-EQERFWV 285 (992)
Q Consensus 225 g-~I~vwdl~---~~~-----~---l~~~--~~~~~~~----~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~-h~~~V~~ 285 (992)
+ .+..++.. .+. . +... ......+ .+.++++...++.|.+||..+++....... ......+
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~ 295 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDS 295 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEE
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCe
Confidence 5 44444421 110 0 0111 0111111 136777778888999999856664333322 2456889
Q ss_pred EEEeCCCCEEEEEEC
Q psy2685 286 LVAHPTLNLFAAGHD 300 (992)
Q Consensus 286 la~spdg~~Lasgsd 300 (992)
++|.+++.++++.+.
T Consensus 296 va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 296 FNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEECTTSCEEEEECC
T ss_pred eEECCCCcEEEEeCc
Confidence 999999998887654
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=3e-07 Score=99.41 Aligned_cols=226 Identities=7% Similarity=-0.037 Sum_probs=153.1
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE-EccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE
Q psy2685 50 HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT-LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI 128 (992)
Q Consensus 50 h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i 128 (992)
....+.+++++++|...++...++.|.+||.. ++.... +..+...+.++++.+++.+.++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45678999999999977777678999999987 554432 22334678999999999877776668899999987 5543
Q ss_pred E-EEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeE
Q psy2685 129 C-VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVS 207 (992)
Q Consensus 129 ~-~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~ 207 (992)
. ........+.++++.++++++++...++.|..+|..+ .+..+ .+......+.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---------------~~~~~-----------~~~~~~~~~~ 149 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG---------------TIYEY-----------DLPNKGSYPA 149 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS---------------CEEEE-----------ECSSTTCCEE
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC---------------CEEEc-----------cCCCCCCCce
Confidence 2 2222446789999999998877776678888888652 11111 1222345688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeecc--Cccc-------ccCEEEEEeCCCeEEEEECCCCeEEE-Eee
Q psy2685 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE--QERF-------WSEVIVSNAEDKSIRLWDMTKRTCLN-TFR 277 (992)
Q Consensus 208 ~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~--~~~~-------~s~~l~sgs~Dg~I~vwd~~t~~~v~-~l~ 277 (992)
++.++|++++.++...++.|..||. +++... +... .... .+.+.++....+.|.+||. +++... ...
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 226 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP 226 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence 9999999997777766889999998 554332 2211 1111 1245555556778999998 444333 233
Q ss_pred cCCCCEEEEEEeCCCCEEEEEEC-CCEEEE
Q psy2685 278 REQERFWVLVAHPTLNLFAAGHD-AGMVVF 306 (992)
Q Consensus 278 ~h~~~V~~la~spdg~~Lasgsd-dgiivw 306 (992)
.+...+.+++++++|++.++... +++..|
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred CCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 34567889999999987666533 344444
No 214
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.10 E-value=7.7e-08 Score=108.79 Aligned_cols=247 Identities=6% Similarity=-0.023 Sum_probs=153.1
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccC---------CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEH---------EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLG 91 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h---------~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~ 91 (992)
+..+++++.++.|..+|..+|+.+.++... ...+.+. ...++..+++++.++.|..+|..+|+.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 567888888999999999999988776542 2233222 222455788889999999999999998877654
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCe-----EEEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 92 HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYV-----MCAQFHPTDDIVVSASLDQTIRVWDISG 166 (992)
Q Consensus 92 h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V-----~sl~fspdg~~L~sgs~Dg~I~iwd~~~ 166 (992)
........... +..+++++.++.|..+|.++++.+.......... ...... +..++.++.++.+..+|..+
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 43221112222 3478888999999999999999888776432211 112222 45677888899999999875
Q ss_pred Cccccc--------------------cCC-------cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE
Q psy2685 167 LRKKNV--------------------APG-------MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV 219 (992)
Q Consensus 167 ~~~~~~--------------------~~~-------~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~ 219 (992)
++..-. .+. .+..++.+..+|..+++. .-... ......+.. ++..+.
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--~w~~~--~~~~~~~~~--~~~~l~ 281 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--MWKRE--LGSVNDFIV--DGNRIY 281 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--EEEEC--CCCEEEEEE--ETTEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--Eeecc--CCCCCCceE--ECCEEE
Confidence 433210 000 233456666666665542 11111 122333333 245566
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeccCc------ccccCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy2685 220 SNAEDKSIRLWDMTKRTCLNTFRREQE------RFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRR 278 (992)
Q Consensus 220 s~s~Dg~I~vwdl~~~~~l~~~~~~~~------~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~ 278 (992)
.++.++.+..+|..+|+.+........ ...+..++.++.+|.+..+|..+++.+.....
T Consensus 282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 666777777777777776555442111 11236677777777777777777777666554
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=4.6e-09 Score=129.51 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=147.7
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc-----CCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCC--------
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLH-----NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDY-------- 73 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~-----dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg-------- 73 (992)
+|...+.+++|||||++||.+.. ...|++||+.+|+.+... .+.....+++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 35567889999999999986542 257999999999865431 111112467899 999999888774
Q ss_pred -----eEEEEEcCCCe----EEEEEcc-CCCCEEEEEEecCCCEEEEEEC----CCeEEEEECCCCe-eEEEEecCCCCe
Q psy2685 74 -----KIKVWNYKQRK----CIFTLLG-HLDYIRTTFFHHEYPWILSASD----DQTIRIWNWQSRN-CICVLTGHNHYV 138 (992)
Q Consensus 74 -----~I~VWd~~t~~----~~~~l~~-h~~~V~~i~fspd~~~L~sgs~----Dg~I~vwdl~t~~-~i~~l~~h~~~V 138 (992)
.|.+|++.++. ++..... |......+.|+|||++|+.... +..|.++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 49999987754 3333334 5556788999999998865443 3589999997763 445566666666
Q ss_pred EEEEEecCCCEEEEEEC-C---CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC
Q psy2685 139 MCAQFHPTDDIVVSASL-D---QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK 214 (992)
Q Consensus 139 ~sl~fspdg~~L~sgs~-D---g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd 214 (992)
... |++++..|+..+. + +.|..+|+.+ +.......+..|...+. .|+|+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~------------------------~~~~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN------------------------PGPAHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTS------------------------CCGGGCEEEECCCSSCE--EEEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCC------------------------CCccccEEEecCCCCEE--EEEEE
Confidence 555 6666665554443 2 3455555543 22111223455655555 88999
Q ss_pred CCEEEEEeCCC---eEEEEECCCCeeeeEeeccCc-cc-------ccC-EEEEEeC---CCeEEEEECCCCe
Q psy2685 215 SEVIVSNAEDK---SIRLWDMTKRTCLNTFRREQE-RF-------WSE-VIVSNAE---DKSIRLWDMTKRT 271 (992)
Q Consensus 215 g~~L~s~s~Dg---~I~vwdl~~~~~l~~~~~~~~-~~-------~s~-~l~sgs~---Dg~I~vwd~~t~~ 271 (992)
++.|+....++ .|++||+.++. ...+..... .+ .+. ++++.++ -+++..||+.+++
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 98877666544 68899987543 333332211 11 122 3333322 2678888877665
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.03 E-value=1.9e-07 Score=102.15 Aligned_cols=243 Identities=11% Similarity=0.128 Sum_probs=144.3
Q ss_pred CCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE
Q psy2685 50 HEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI 128 (992)
Q Consensus 50 h~~~V~~l~fspdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i 128 (992)
+..--.+..|+|++. ++++...++.|..||..+++.. .+ .....+.++++++++.+++ +. +..|.+||.++++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEE
Confidence 334456889999655 5555556889999999887653 23 3457799999999999544 44 568999999887754
Q ss_pred EEEecC----CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCC
Q psy2685 129 CVLTGH----NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYN 204 (992)
Q Consensus 129 ~~l~~h----~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~ 204 (992)
...... ...+..++++|+|++.++...+... .. ......-.+|.+.... ....+..+..
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~-----~~----------~~~~~~~~l~~~d~~g--~~~~~~~~~~ 149 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA-----PA----------VLERHQGALYSLFPDH--HVKKYFDQVD 149 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB-----TT----------BCCTTCEEEEEECTTS--CEEEEEEEES
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc-----cc----------cccCCCcEEEEEECCC--CEEEEeeccc
Confidence 433321 2347889999999866654322110 00 0000111222222111 1111223334
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q psy2685 205 NVSCVLFHPKSEVI-VSNAEDKSIRLWDMT--KRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE 281 (992)
Q Consensus 205 ~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~--~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~ 281 (992)
....++|+|+++.| ++.+.++.|.+||+. ++.... .+....+..+..
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~------------------------------~~~~~~~~~~~~ 199 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN------------------------------RRSVYKLEKEEQ 199 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE------------------------------EEEEEECCGGGC
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC------------------------------cEEEEECCCCCC
Confidence 56789999999866 455667889998863 332110 011122222234
Q ss_pred CEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEc-
Q psy2685 282 RFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYN- 360 (992)
Q Consensus 282 ~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafs- 360 (992)
....++++++|++.++...++. |..||..+++....+.. +...+++++|.
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~--------------------------v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g 250 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGR--------------------------VIRLDPVTGKRLQTVKL---PVDKTTSCCFGG 250 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTE--------------------------EEEECTTTCCEEEEEEC---SSSBEEEEEEES
T ss_pred CCCeeEECCCCCEEEEEcCCCE--------------------------EEEEcCCCceEEEEEEC---CCCCceEEEEeC
Confidence 5678899999988777655442 23345444443333332 23567999998
Q ss_pred cCCCEEEEEecC
Q psy2685 361 ATEHSILVTTRN 372 (992)
Q Consensus 361 pdg~~lav~~~~ 372 (992)
|+++.|.+++..
T Consensus 251 ~d~~~L~vt~~~ 262 (297)
T 3g4e_A 251 KNYSEMYVTCAR 262 (297)
T ss_dssp GGGCEEEEEEBC
T ss_pred CCCCEEEEEcCC
Confidence 899888777653
No 217
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.03 E-value=5.7e-06 Score=103.46 Aligned_cols=399 Identities=12% Similarity=0.101 Sum_probs=231.1
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEe-ccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKF-DEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~-~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 90 (992)
|.++...+++. |..|+.++-|..||..+++..... ..+...|.++...++|.+. .|+.++-+..||..+++......
T Consensus 175 i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeec
Confidence 78888888776 444665555889997777543321 1235679999988888644 45544458889988776543322
Q ss_pred c-------CCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec-------CCCCeEEEEEecCCCEEEEEECC
Q psy2685 91 G-------HLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTG-------HNHYVMCAQFHPTDDIVVSASLD 156 (992)
Q Consensus 91 ~-------h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~-------h~~~V~sl~fspdg~~L~sgs~D 156 (992)
. ....|.++...++|. +..|+.+ -|.+||..++........ ....|.++...++|. +..|+.+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 1 135699999888877 5556666 589999887764433211 235699999998887 5567777
Q ss_pred CeEEEEECCCCcccccc--------CC---------------cccCCCeEEEEEccCCcceEEEEE------eccCCCeE
Q psy2685 157 QTIRVWDISGLRKKNVA--------PG---------------MGADDRQIKLWRMNDSKAWEVDIF------RGHYNNVS 207 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~--------~~---------------~~~~d~~I~iwd~~~~~~~~i~~l------~~h~~~V~ 207 (992)
+-|..++..+....... .. +|+.++.+..|+..+......... ......|.
T Consensus 330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 77888876433211100 00 455556777777665542111100 01235789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeec----cCcccc------cCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy2685 208 CVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRR----EQERFW------SEVIVSNAEDKSIRLWDMTKRTCLNTFR 277 (992)
Q Consensus 208 ~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~----~~~~~~------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~ 277 (992)
++...++|.+|..|+.++-+..||..+++....... ....+. ...+..|+. +-+..||..+++......
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~ 488 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEK 488 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCB
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccc
Confidence 999988998567778878899999887754322110 111111 134555555 458889988776433221
Q ss_pred c------CCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcc---------------eEEe---eccEEEEEeCCeEEEE
Q psy2685 278 R------EQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP---------------AYTV---HNNVMYYVKERFLHRL 333 (992)
Q Consensus 278 ~------h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~---------------~~~~---~~~~v~~~~~~~i~i~ 333 (992)
. ....|.++...++|++.+... +|+..|+..+... +..+ ..+.+++...+-+..|
T Consensus 489 ~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~ 567 (795)
T 4a2l_A 489 EKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCF 567 (795)
T ss_dssp CTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESSCEEEE
T ss_pred cccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCCceeE
Confidence 1 235789999999999777655 8988887654322 1111 2234555555566677
Q ss_pred EeeCCCceEEEEeecC-CCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeCCCccccceeccCccccc---eEEEE
Q psy2685 334 DLTNSKDSVVMQLRGG-GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTG---ISAVW 409 (992)
Q Consensus 334 dl~~~~~~~v~~l~~~-~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~---~s~~w 409 (992)
|..+.+.. .+....+ ....|.++...++|...+.+.. .+..|+........-....+..... .++..
T Consensus 568 d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~--------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~ 638 (795)
T 4a2l_A 568 NEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLSTNR--------GISCFNPETEKFRNFTESDGLQSNQFNTASYCR 638 (795)
T ss_dssp ETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEETT--------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEE
T ss_pred CCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEcCC--------ceEEEcCCCCcEEEcCCcCCCccccCccCceeE
Confidence 75443211 1111111 2345788888888887665532 3444443221110000011111111 23344
Q ss_pred ecCCeEEEEEcCCeEEE
Q psy2685 410 VARNRFAVLDRNHTILI 426 (992)
Q Consensus 410 ~~~~~~av~~~~g~I~i 426 (992)
..++.+.++..+|.+.+
T Consensus 639 ~~~G~l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 639 TSVGQMYFGGINGITTF 655 (795)
T ss_dssp CTTSCEEEEETTEEEEE
T ss_pred CCCCeEEEecCCceEEE
Confidence 56778888877775444
No 218
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.02 E-value=2.9e-08 Score=108.61 Aligned_cols=197 Identities=10% Similarity=0.128 Sum_probs=136.5
Q ss_pred CCCCEEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCeEEEE-ecc----CCCCEEEEEEecCCCEEEEEECC---------
Q psy2685 8 KSARVKGLSFHPK-RPWILSSLHNGVIQLWDYRMNTLLEK-FDE----HEGPVRGICFHNQQPIFVSGGDD--------- 72 (992)
Q Consensus 8 H~~~V~~iafspd-g~~Lasg~~dg~I~IWd~~~g~~~~~-~~~----h~~~V~~l~fspdg~~Lasgs~D--------- 72 (992)
+...+.+++++|+ +. |.+++..+.|.+||.. ++.... ... ....+.+++++++|++.++...+
T Consensus 69 ~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4567899999999 65 4444445579999987 765433 221 12358899999999877776554
Q ss_pred ------CeEEEEEcCCCeEEEEEccCCCCEEEEEEe----cCCCEEEEE-ECCCeEEEEECC-CCe-----eEEEEecCC
Q psy2685 73 ------YKIKVWNYKQRKCIFTLLGHLDYIRTTFFH----HEYPWILSA-SDDQTIRIWNWQ-SRN-----CICVLTGHN 135 (992)
Q Consensus 73 ------g~I~VWd~~t~~~~~~l~~h~~~V~~i~fs----pd~~~L~sg-s~Dg~I~vwdl~-t~~-----~i~~l~~h~ 135 (992)
+.|..||.. ++... +..+......++|+ |+++.++.+ +.++.|.+||.+ +++ ....+.++.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 567777765 55433 22344557899999 999766555 567899999986 444 222333343
Q ss_pred -CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC
Q psy2685 136 -HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK 214 (992)
Q Consensus 136 -~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd 214 (992)
..+..++++++|++.++...++.|.+||..+.+. ...+..+...+.+++|+|+
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--------------------------~~~~~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--------------------------KMRIRCPFEKPSNLHFKPQ 278 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--------------------------SEEEECSSSCEEEEEECTT
T ss_pred CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--------------------------eEEEeCCCCCceeEEECCC
Confidence 5688999999999888888888999998763221 1223344567899999999
Q ss_pred CCEE-EEEeCCCeEEEEECCC
Q psy2685 215 SEVI-VSNAEDKSIRLWDMTK 234 (992)
Q Consensus 215 g~~L-~s~s~Dg~I~vwdl~~ 234 (992)
++.| ++...++.|..|++..
T Consensus 279 g~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 279 TKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEeCCCCeEEEEeCCC
Confidence 9944 5555668899998764
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.00 E-value=6.9e-09 Score=117.69 Aligned_cols=134 Identities=10% Similarity=0.090 Sum_probs=112.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCI 86 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~ 86 (992)
.+.+ |+.++| |+.+|+++ .+|.|++||+.+.........|..++.++.+.+. .+++++.||.+.+||+.++...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc
Confidence 4666 999999 99999999 8899999999876655666678888988887755 3888999999999999988764
Q ss_pred EEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCee--EEEE------e---cCCCCeEEEEEecCCCEEEE
Q psy2685 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC--ICVL------T---GHNHYVMCAQFHPTDDIVVS 152 (992)
Q Consensus 87 ~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~--i~~l------~---~h~~~V~sl~fspdg~~L~s 152 (992)
. +...|++++|||+| ++.|..||++++|+...+.. ..++ . +|...|.++.|.+++.++++
T Consensus 160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 3 45689999999999 78899999999999988775 5566 2 47889999999998887765
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.94 E-value=1.4e-07 Score=116.01 Aligned_cols=275 Identities=8% Similarity=0.010 Sum_probs=171.5
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccC--CCCEEEEEEec---CCCEEEEEE------CCCeEEEEEcCCCeEEEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEH--EGPVRGICFHN---QQPIFVSGG------DDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h--~~~V~~l~fsp---dg~~Lasgs------~Dg~I~VWd~~t~~~~~~l 89 (992)
+..+++++.|+.|..+|..+|+.+.++... ......+..+| ++ .+++++ .+|.|..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888889999999999999998877642 11101111112 44 444443 3689999999999998877
Q ss_pred ccCC-------------------------------CCEEEEEEecCCCEEEEEECCCe-------------------EEE
Q psy2685 90 LGHL-------------------------------DYIRTTFFHHEYPWILSASDDQT-------------------IRI 119 (992)
Q Consensus 90 ~~h~-------------------------------~~V~~i~fspd~~~L~sgs~Dg~-------------------I~v 119 (992)
.... .....+++.|+...+++++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 01125788888889999888764 999
Q ss_pred EECCCCeeEEEEec--CC-------CCeEEEEEecCCC---EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEE
Q psy2685 120 WNWQSRNCICVLTG--HN-------HYVMCAQFHPTDD---IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWR 187 (992)
Q Consensus 120 wdl~t~~~i~~l~~--h~-------~~V~sl~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd 187 (992)
+|.++|+.+..+.. |. .++.......+|. .++.++.+|.++++|..+++.......... .-..-.+
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~~ 357 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ--SWTKGMD 357 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc--ccccccC
Confidence 99999999988764 21 1222223333554 788999999999999987654311100000 0000000
Q ss_pred ccCCcc-------------eEEEEEeccCC--CeEEEEEcCCCCEEEEEeC-----------------------------
Q psy2685 188 MNDSKA-------------WEVDIFRGHYN--NVSCVLFHPKSEVIVSNAE----------------------------- 223 (992)
Q Consensus 188 ~~~~~~-------------~~i~~l~~h~~--~V~~v~fspdg~~L~s~s~----------------------------- 223 (992)
..+... .......+..+ .-..++++|+..++++.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 000000 00011111000 1223678888777776532
Q ss_pred ----------------CCeEEEEECCCCeeeeEeeccCccc------ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q psy2685 224 ----------------DKSIRLWDMTKRTCLNTFRREQERF------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQE 281 (992)
Q Consensus 224 ----------------Dg~I~vwdl~~~~~l~~~~~~~~~~------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~ 281 (992)
+|.+..||+.+|+.+-++..+.... -+.+++.++.|+.++.||.++|+.+.+++...+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence 3789999999999887776544221 137888999999999999999999988875433
Q ss_pred C-EEEEEEeCCCC-EEEEE
Q psy2685 282 R-FWVLVAHPTLN-LFAAG 298 (992)
Q Consensus 282 ~-V~~la~spdg~-~Lasg 298 (992)
. ..-+.|..+|+ ++++.
T Consensus 518 ~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 518 VMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp CCSCCEEEEETTEEEEEEE
T ss_pred cccCceEEEECCEEEEEEE
Confidence 2 23466777877 44443
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=1.8e-07 Score=114.63 Aligned_cols=273 Identities=9% Similarity=0.033 Sum_probs=172.7
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeEEEEeccC-C----CCEEEEEEecCCCEEEEEEC------CCeEEEEEcCCCeEEEE
Q psy2685 20 KRPWILSSLHNGVIQLWDYRMNTLLEKFDEH-E----GPVRGICFHNQQPIFVSGGD------DYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 20 dg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h-~----~~V~~l~fspdg~~Lasgs~------Dg~I~VWd~~t~~~~~~ 88 (992)
++..+++++.|+.|..+|..+|+.+.++..+ . ..+.+--.- .+..+++++. +|.|..+|..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888888999999999999999888754 2 111110011 1345555543 69999999999999887
Q ss_pred EccCCCC--------------------------------EEEEEEecCCCEEEEEECCC-------------------eE
Q psy2685 89 LLGHLDY--------------------------------IRTTFFHHEYPWILSASDDQ-------------------TI 117 (992)
Q Consensus 89 l~~h~~~--------------------------------V~~i~fspd~~~L~sgs~Dg-------------------~I 117 (992)
+...... ...++++|++..++.++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 7542211 12578889888888887664 59
Q ss_pred EEEECCCCeeEEEEec--CC-------CCeEEEEEecCC---CEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEE
Q psy2685 118 RIWNWQSRNCICVLTG--HN-------HYVMCAQFHPTD---DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKL 185 (992)
Q Consensus 118 ~vwdl~t~~~i~~l~~--h~-------~~V~sl~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~i 185 (992)
..+|.++|+.+..+.. |. .....+....+| ..++.++.+|.++++|..+++......... .....-
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~~~~~ 363 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP--VNWASG 363 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc--cCcccc
Confidence 9999999999888764 21 122333444467 688999999999999998754321110000 000000
Q ss_pred EEccCCcce----------EEEEEeccCC--CeEEEEEcCCCCEEEEEeC------------------------------
Q psy2685 186 WRMNDSKAW----------EVDIFRGHYN--NVSCVLFHPKSEVIVSNAE------------------------------ 223 (992)
Q Consensus 186 wd~~~~~~~----------~i~~l~~h~~--~V~~v~fspdg~~L~s~s~------------------------------ 223 (992)
+| .+.... ....+.+..+ .-..++++|++.++++.+.
T Consensus 364 ~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 364 YD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 11 011000 0000111100 1125788898888777543
Q ss_pred -------------CCeEEEEECCCCeeeeEeeccCcc----c--ccCEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCE
Q psy2685 224 -------------DKSIRLWDMTKRTCLNTFRREQER----F--WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ-ERF 283 (992)
Q Consensus 224 -------------Dg~I~vwdl~~~~~l~~~~~~~~~----~--~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~-~~V 283 (992)
.+.|..||+.+++.+-.+...... + .+..++.++.||.+++||..+++.+.++.... ...
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 278999999999988777643221 1 13678889999999999999999999987443 222
Q ss_pred EEEEEeCCCCEEE
Q psy2685 284 WVLVAHPTLNLFA 296 (992)
Q Consensus 284 ~~la~spdg~~La 296 (992)
.-+.+.++|+..+
T Consensus 523 ~p~~y~~~G~~~v 535 (677)
T 1kb0_A 523 APSTYMVDGRQYV 535 (677)
T ss_dssp CCEEEEETTEEEE
T ss_pred CCEEEEeCCEEEE
Confidence 3456667776443
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.89 E-value=4.9e-07 Score=103.82 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=166.5
Q ss_pred cCCCEEEEEECC-----CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE----------CCCeEEEEECCCC
Q psy2685 103 HEYPWILSASDD-----QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS----------LDQTIRVWDISGL 167 (992)
Q Consensus 103 pd~~~L~sgs~D-----g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs----------~Dg~I~iwd~~~~ 167 (992)
++++.+++.... +.|.++|..+++.+.++..-..+ .+.++||+++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666666543 69999999999999998865555 899999999887776 3567888887664
Q ss_pred ccccccCCcccCCCeEEEEEccCCcceEEEEEe-c------cCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeee
Q psy2685 168 RKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-G------HYNNVSCVLFHPKSEVIVSNAE--DKSIRLWDMTKRTCL 238 (992)
Q Consensus 168 ~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-~------h~~~V~~v~fspdg~~L~s~s~--Dg~I~vwdl~~~~~l 238 (992)
+. +..+. + .......+.|+|||++++++.. ++.|.+.|+.+++.+
T Consensus 160 ~v--------------------------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 160 LP--------------------------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp CE--------------------------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred cE--------------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 32 11111 1 0123446799999999998874 588999999999998
Q ss_pred eEeeccCccc----ccCEEEEEeCCCeEEEEECCCCeEEEE----eecCCCCE-EEEEEeCCCCEEEEEECCC-EEEEEe
Q psy2685 239 NTFRREQERF----WSEVIVSNAEDKSIRLWDMTKRTCLNT----FRREQERF-WVLVAHPTLNLFAAGHDAG-MVVFKF 308 (992)
Q Consensus 239 ~~~~~~~~~~----~s~~l~sgs~Dg~I~vwd~~t~~~v~~----l~~h~~~V-~~la~spdg~~Lasgsddg-iivw~l 308 (992)
.++....... -...+++.+.||.+.+.+..+++.... +.....++ ..+.+++++..++..+..+ +.+.+.
T Consensus 214 ~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~ 293 (426)
T 3c75_H 214 RMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL 293 (426)
T ss_dssp EEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred EEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence 8887543211 125667788899999989866665432 21112221 2346788877655544444 445555
Q ss_pred cCCc--------------------------ceEEeeccEEEEEe-----------CCeEEEEEeeCCCceEEEEeecCCC
Q psy2685 309 ERER--------------------------PAYTVHNNVMYYVK-----------ERFLHRLDLTNSKDSVVMQLRGGGR 351 (992)
Q Consensus 309 ~~~~--------------------------~~~~~~~~~v~~~~-----------~~~i~i~dl~~~~~~~v~~l~~~~~ 351 (992)
.... ..+...++.+|... .+.+.+.|..+.+....+.+.
T Consensus 294 ~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---- 369 (426)
T 3c75_H 294 TAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---- 369 (426)
T ss_dssp CSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----
T ss_pred cCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----
Confidence 3221 11222345666653 247999999888766655542
Q ss_pred ccceeEEEccCCC-EEEEEecCCccccCCeEEEEEeCCCc
Q psy2685 352 IPAHSISYNATEH-SILVTTRNANNFENSTYDLYMIPKEE 390 (992)
Q Consensus 352 ~~I~~lafspdg~-~lav~~~~~~~~~~g~i~i~~l~~~~ 390 (992)
..++.++|+|||+ .+.++.. .++.+.+++.....
T Consensus 370 ~~P~gia~spDg~~~lyv~n~-----~s~~VsVID~~t~k 404 (426)
T 3c75_H 370 HEIDSINVSQDAEPLLYALSA-----GTQTLHIYDAATGE 404 (426)
T ss_dssp EEECEEEECCSSSCEEEEEET-----TTTEEEEEETTTCC
T ss_pred CCcCeEEEccCCCEEEEEEcC-----CCCeEEEEECCCCC
Confidence 2579999999999 7776653 25788888876543
No 223
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.87 E-value=1.8e-07 Score=107.51 Aligned_cols=202 Identities=9% Similarity=0.080 Sum_probs=133.7
Q ss_pred EEEcCCCCEEEEEEcCC--eEEEEEcCCCeEEEEe----ccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q psy2685 15 LSFHPKRPWILSSLHNG--VIQLWDYRMNTLLEKF----DEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 15 iafspdg~~Lasg~~dg--~I~IWd~~~g~~~~~~----~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~ 88 (992)
++|+|++..|+++..++ .|.+|+...+.....+ ......+.+++++|++..|+++..++.|..||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999998887765 7999997766543343 22456678999999555666677789999999987764332
Q ss_pred ----EccCCCCE--EEEEEecC-CCEEEEEECCCeEEEEECCCCeeEEEEecCC---------------CCeEEEEEecC
Q psy2685 89 ----LLGHLDYI--RTTFFHHE-YPWILSASDDQTIRIWNWQSRNCICVLTGHN---------------HYVMCAQFHPT 146 (992)
Q Consensus 89 ----l~~h~~~V--~~i~fspd-~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~---------------~~V~sl~fspd 146 (992)
..++...- ..++|+|+ +.++++-..++.|..|+.... +..+.++. .....++++|+
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 22222222 38999995 555556667889999997643 33443332 45789999999
Q ss_pred CCEEEEEE-CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEE--EEEeccCCCeEEEEEcCCCCEEEEEeC
Q psy2685 147 DDIVVSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEV--DIFRGHYNNVSCVLFHPKSEVIVSNAE 223 (992)
Q Consensus 147 g~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i--~~l~~h~~~V~~v~fspdg~~L~s~s~ 223 (992)
|+++++-+ .++.|+.|+..+.. +..+--.....-.. ............++++|+|.++++-..
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~--------------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGY--------------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTE--------------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred CCEEEEeCCCCCEEEEEECCCCE--------------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 99777777 78899999965422 11110000000000 000011245789999999988888888
Q ss_pred CCeEEEEEC
Q psy2685 224 DKSIRLWDM 232 (992)
Q Consensus 224 Dg~I~vwdl 232 (992)
++.|+.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 889988764
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.87 E-value=7.8e-08 Score=108.60 Aligned_cols=260 Identities=7% Similarity=-0.120 Sum_probs=166.8
Q ss_pred CCCEEEEEEc-CC----eEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEcCCCe
Q psy2685 20 KRPWILSSLH-NG----VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----------DDYKIKVWNYKQRK 84 (992)
Q Consensus 20 dg~~Lasg~~-dg----~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~VWd~~t~~ 84 (992)
...++++... ++ .|.++|..+++.+.++.....+ .+.++||++.++++. .++.|.+||..+++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 3345555543 33 8899999999999999876667 799999999888876 36899999999999
Q ss_pred EEEEEccC-------CCCEEEEEEecCCCEEEEEEC--CCeEEE--EECCCCeeEEEEecCCCCeEEEEEecCC-CEEEE
Q psy2685 85 CIFTLLGH-------LDYIRTTFFHHEYPWILSASD--DQTIRI--WNWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVS 152 (992)
Q Consensus 85 ~~~~l~~h-------~~~V~~i~fspd~~~L~sgs~--Dg~I~v--wdl~t~~~i~~l~~h~~~V~sl~fspdg-~~L~s 152 (992)
.+.++..+ ......+.++|||++++++.. +..+.+ +|..+ +..+... +. ....|++ ..+++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~ 180 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYL 180 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEEC
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEE
Confidence 99888543 123567999999999998874 467888 99876 3444321 11 1223444 34555
Q ss_pred EECCCeEEEEECCC-----Ccccc----cc-----CC---------cccCCCeEEEEEccCCcceEEEEEec--------
Q psy2685 153 ASLDQTIRVWDISG-----LRKKN----VA-----PG---------MGADDRQIKLWRMNDSKAWEVDIFRG-------- 201 (992)
Q Consensus 153 gs~Dg~I~iwd~~~-----~~~~~----~~-----~~---------~~~~d~~I~iwd~~~~~~~~i~~l~~-------- 201 (992)
.+.||.+.+.|... .+... .. +. .... +.+.+.|...........+.-
T Consensus 181 ~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence 66777777777765 21110 00 00 0111 456666664432111111110
Q ss_pred --cCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeeeEeeccCccc---c---c-CEEEEEe-CCCeE
Q psy2685 202 --HYNNVSCVLFHPKSEVIVSNAE---------DKSIRLWDMTKRTCLNTFRREQERF---W---S-EVIVSNA-EDKSI 262 (992)
Q Consensus 202 --h~~~V~~v~fspdg~~L~s~s~---------Dg~I~vwdl~~~~~l~~~~~~~~~~---~---s-~~l~sgs-~Dg~I 262 (992)
+......+.++|+++.+.++.. ++.+.++|+.+++.+..+.....+. + + ..+++.. .++.|
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence 0111122679999988776543 2356699999998887776443211 1 2 4677777 69999
Q ss_pred EEEECCCCeEEEEeecCCCCEEEEEEeC
Q psy2685 263 RLWDMTKRTCLNTFRREQERFWVLVAHP 290 (992)
Q Consensus 263 ~vwd~~t~~~v~~l~~h~~~V~~la~sp 290 (992)
.++|+.+++.+.++..... -+.+++++
T Consensus 340 sVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 9999999999999875543 34555544
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.87 E-value=1e-07 Score=117.39 Aligned_cols=219 Identities=11% Similarity=0.095 Sum_probs=135.4
Q ss_pred CCCCEEEEEEecCCCEEEEEE-----CCCeEEEEEcCCCeEEEE-EccCCCCEEEEEEecCCCEEEEEECCC--------
Q psy2685 50 HEGPVRGICFHNQQPIFVSGG-----DDYKIKVWNYKQRKCIFT-LLGHLDYIRTTFFHHEYPWILSASDDQ-------- 115 (992)
Q Consensus 50 h~~~V~~l~fspdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~i~fspd~~~L~sgs~Dg-------- 115 (992)
|...+.+++|||||++|+.+. ....|++||+.+++.+.. +... ....++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccc
Confidence 455788999999999888543 235799999999986543 2111 12467899 999999888774
Q ss_pred -----eEEEEECCCCe----eEEEEec-CCCCeEEEEEecCCCEEEEEECC----CeEEEEECCCCccccccCCcccCCC
Q psy2685 116 -----TIRIWNWQSRN----CICVLTG-HNHYVMCAQFHPTDDIVVSASLD----QTIRVWDISGLRKKNVAPGMGADDR 181 (992)
Q Consensus 116 -----~I~vwdl~t~~----~i~~l~~-h~~~V~sl~fspdg~~L~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~d~ 181 (992)
.|++|++.++. ++..... |.....++.|+|||++++..+.. ..|.++|+.+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~--------------- 268 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ--------------- 268 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS---------------
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC---------------
Confidence 39999988754 3333333 45567899999999987655432 3556666543
Q ss_pred eEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE-EEeCC---CeEEEEECCCCee--eeEeeccCccc-----cc
Q psy2685 182 QIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAED---KSIRLWDMTKRTC--LNTFRREQERF-----WS 250 (992)
Q Consensus 182 ~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~-s~s~D---g~I~vwdl~~~~~--l~~~~~~~~~~-----~s 250 (992)
+.. ....+..+....... |+++|..|+ +...+ +.|..+|+.++.. ...+..+.... .+
T Consensus 269 ---------~~~-~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g 337 (693)
T 3iuj_A 269 ---------ENA-PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGS 337 (693)
T ss_dssp ---------TTC-CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEET
T ss_pred ---------CCC-ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEEC
Confidence 211 223344555555554 566665554 44433 6799999987653 23333332221 12
Q ss_pred CEEEEEe-CCC--eEEEEECCCCeEEEEee-cCCCCEEEEEEeCCCCEEEEE
Q psy2685 251 EVIVSNA-EDK--SIRLWDMTKRTCLNTFR-REQERFWVLVAHPTLNLFAAG 298 (992)
Q Consensus 251 ~~l~sgs-~Dg--~I~vwd~~t~~~v~~l~-~h~~~V~~la~spdg~~Lasg 298 (992)
..++... .++ .|++||+..+. ...+. .....+..+.++|++..++..
T Consensus 338 ~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 338 GYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp TEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred CEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEE
Confidence 4454444 444 68889987554 34443 233456677777777655543
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=5.4e-10 Score=126.95 Aligned_cols=187 Identities=12% Similarity=0.137 Sum_probs=103.4
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCC-CEE-
Q psy2685 20 KRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD-YIR- 97 (992)
Q Consensus 20 dg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~-~V~- 97 (992)
++..+++++.||.|..||..+|+.+.+++. +.+.+..+.+++..+++++.||.|..||..+|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 5555666667787888888999999999988887666543311 010
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcc
Q psy2685 98 TTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMG 177 (992)
Q Consensus 98 ~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 177 (992)
+..+. .+..+++|+.|+.+..||.++|+.+..+..+. ...++|++..+++++.|+.|+.||.++++..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------- 153 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------- 153 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCC-------
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE-------
Confidence 00111 34567888899999999999999888776553 2345678888999999999999998764321
Q ss_pred cCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 178 ADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS---EVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 178 ~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg---~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
| ... .... ....++++. ..+++++.||.+..||..+|+.+..+
T Consensus 154 --------W--------~~~-~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 154 --------W--------NAT-YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp --------C--------EEE-EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred --------E--------eEe-cccc----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 1 111 0111 111222221 34566777888888888777655443
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=6.4e-07 Score=109.82 Aligned_cols=214 Identities=10% Similarity=-0.043 Sum_probs=131.5
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCCC-----------CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEG-----------PVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~-----------~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
+..+++++.++.|.-+|..+|+.+.++..... ...+++. .+..+++++.|+.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677788889999999999999988864321 1123333 3568888899999999999999999888
Q ss_pred ccC-C----CCEEEEEEecCCCEEEEEEC------CCeEEEEECCCCeeEEEEecCCCC---------------------
Q psy2685 90 LGH-L----DYIRTTFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHNHY--------------------- 137 (992)
Q Consensus 90 ~~h-~----~~V~~i~fspd~~~L~sgs~------Dg~I~vwdl~t~~~i~~l~~h~~~--------------------- 137 (992)
..+ . ..+.+--.. .+..+++++. ++.|..+|.++|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 111110011 1345555543 799999999999999887643211
Q ss_pred -----------eEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc----
Q psy2685 138 -----------VMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH---- 202 (992)
Q Consensus 138 -----------V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h---- 202 (992)
...++++|++..++.++.++.. |...... ...+-..-.+.|..+|..+++..=......|
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~---~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRS---PKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHS---TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCC---ccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 1256788888888888777532 2210000 0000000002355555555442111111112
Q ss_pred ---CCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 203 ---YNNVSCVLFHPKS---EVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 203 ---~~~V~~v~fspdg---~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
......+....+| ..++.++.+|.+.++|..+|+.+..+.
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 1122333444467 688999999999999999999876655
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.85 E-value=7.4e-07 Score=109.46 Aligned_cols=212 Identities=10% Similarity=0.015 Sum_probs=126.2
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCC----------E-EEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGP----------V-RGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~----------V-~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
+..+++++.++.|.-+|..+|+.+.++..+... + .+++. .+..+++++.|+.+..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557788888999999999999999988643220 0 12222 3557888999999999999999998877
Q ss_pred ccC--CCCEEEEEEec---CCCEEEEEE------CCCeEEEEECCCCeeEEEEecCC-----------------------
Q psy2685 90 LGH--LDYIRTTFFHH---EYPWILSAS------DDQTIRIWNWQSRNCICVLTGHN----------------------- 135 (992)
Q Consensus 90 ~~h--~~~V~~i~fsp---d~~~L~sgs------~Dg~I~vwdl~t~~~i~~l~~h~----------------------- 135 (992)
... ......+..+| ++ .+++++ .+|.|..||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111112 33 444443 37899999999999988775211
Q ss_pred --------CCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC----
Q psy2685 136 --------HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY---- 203 (992)
Q Consensus 136 --------~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~---- 203 (992)
..-..++++|++..++.++.++.. |..... ....+-..-.+.|..+|..+++..=......|.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~--w~~~~~---~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL--WDPKWR---SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHH---HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCc--cccCCC---CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 001257888888889988887651 210000 000000000023555555554421111111121
Q ss_pred ---CCeEEEEEcCCCC---EEEEEeCCCeEEEEECCCCeeeeE
Q psy2685 204 ---NNVSCVLFHPKSE---VIVSNAEDKSIRLWDMTKRTCLNT 240 (992)
Q Consensus 204 ---~~V~~v~fspdg~---~L~s~s~Dg~I~vwdl~~~~~l~~ 240 (992)
.+........+|. .++.++.+|.++++|..+|+.+..
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 1222223233554 788999999999999999988743
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.85 E-value=7e-07 Score=97.98 Aligned_cols=179 Identities=8% Similarity=0.014 Sum_probs=106.6
Q ss_pred EEEEeccCCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q psy2685 43 LLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121 (992)
Q Consensus 43 ~~~~~~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwd 121 (992)
.+..+........+..|+|+|+ +++++..++.|..|+. +++ ...+..+...+..++++++|.++++...++.|..|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 4444545556778999999999 5566667899999997 454 344555667899999999999666555668899999
Q ss_pred CCCCeeEEEEecC----CCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 122 WQSRNCICVLTGH----NHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 122 l~t~~~i~~l~~h----~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
.+ ++........ ...+..++++|+|++.++-..-|+.. +..+... ......+.|..++..+++...+
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~--~~~~~~~-----~~~~~~~~v~~~d~~~g~~~~~- 184 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK--PSQGCPA-----DPELAHHSVYRLPPDGSPLQRM- 184 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC--GGGSCCC-----CCSSSCEEEEEECSSSCCCEEE-
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc--ccccccc-----ccccCCCeEEEEcCCCCcEEEE-
Confidence 86 5532222111 13456788898888776521101000 0000000 0000113344444433332111
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCC
Q psy2685 198 IFRGHYNNVSCVLFHPKSEVIVSNAED------KSIRLWDMTKR 235 (992)
Q Consensus 198 ~l~~h~~~V~~v~fspdg~~L~s~s~D------g~I~vwdl~~~ 235 (992)
. .......++|+|+++.|+.+... +.|.+|++..+
T Consensus 185 --~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 185 --A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp --E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred --e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 1 33456789999999977776654 67888876543
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=1.1e-06 Score=99.95 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=137.0
Q ss_pred CCCCEEEEE-EcCCeEEEEEcCCC----eEEEEec------c-CCCCEEEEEEecCCCEEEEEECC------CeEEEEEc
Q psy2685 19 PKRPWILSS-LHNGVIQLWDYRMN----TLLEKFD------E-HEGPVRGICFHNQQPIFVSGGDD------YKIKVWNY 80 (992)
Q Consensus 19 pdg~~Lasg-~~dg~I~IWd~~~g----~~~~~~~------~-h~~~V~~l~fspdg~~Lasgs~D------g~I~VWd~ 80 (992)
+++++|++. ..++.|.++|+.+. +..++++ . ....-..+..+|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788877765 45788999998755 6777763 1 11234667888999 77776655 78999999
Q ss_pred CCCeEEEEEccCCC---CEEEEEEecCCCEEEEEE-------------------CCCeEEEEECCCCeeEEEEecC-C-C
Q psy2685 81 KQRKCIFTLLGHLD---YIRTTFFHHEYPWILSAS-------------------DDQTIRIWNWQSRNCICVLTGH-N-H 136 (992)
Q Consensus 81 ~t~~~~~~l~~h~~---~V~~i~fspd~~~L~sgs-------------------~Dg~I~vwdl~t~~~i~~l~~h-~-~ 136 (992)
.+++.+.++....+ .-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999988863222 233578899999888874 3689999999999888887753 1 2
Q ss_pred CeEEEEE--ecCCCEEEEEE------CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe-------c
Q psy2685 137 YVMCAQF--HPTDDIVVSAS------LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-------G 201 (992)
Q Consensus 137 ~V~sl~f--spdg~~L~sgs------~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-------~ 201 (992)
....+.| +|+++++.+++ .+++|.+|....+.. ..+.+.++...+... .+. +
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-----------~~~~vIdi~~~~v~~--~lp~~~~~f~~ 318 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-----------NAEKVIEIPAEPLEG--NLPEILKPFKA 318 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-----------EEEEEEEECCEECCS--SCCGGGGGGTE
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-----------eEEEEEeCCCccccc--ccccccccccc
Confidence 3455656 99999887776 566888877643211 222333322211000 000 0
Q ss_pred cCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q psy2685 202 HYNNVSCVLFHPKSEVIVSNAE-DKSIRLWDMTK 234 (992)
Q Consensus 202 h~~~V~~v~fspdg~~L~s~s~-Dg~I~vwdl~~ 234 (992)
-......+.+||||++|.++.. .+.|.+||+..
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0234678999999998877765 67899999863
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.83 E-value=8.4e-07 Score=98.51 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=123.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEecc----CCCCEEEEEEecCCCEEEEEEC------CCeEEEE
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDE----HEGPVRGICFHNQQPIFVSGGD------DYKIKVW 78 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~----h~~~V~~l~fspdg~~Lasgs~------Dg~I~VW 78 (992)
...+.+++|+|+|.++++. .+ .|.+||..+++....... ....+.+++++|+|+++++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 4679999999999866654 44 499999888875433221 1235889999999996665432 2455555
Q ss_pred EcCCCeEEEEEccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEECC--CC-e-----eEEEEecCCCCeEEEEEecCCCE
Q psy2685 79 NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA-SDDQTIRIWNWQ--SR-N-----CICVLTGHNHYVMCAQFHPTDDI 149 (992)
Q Consensus 79 d~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sg-s~Dg~I~vwdl~--t~-~-----~i~~l~~h~~~V~sl~fspdg~~ 149 (992)
+ +++... +..+......++|+|+++.++.+ +.++.|.+||+. ++ . ....+......+..+++.++|++
T Consensus 167 ~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 167 A--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp E--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred e--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence 5 555433 33334457899999999876555 457899999986 55 3 22223334456788999999987
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEc-CCCCEEEEEeC
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFH-PKSEVIVSNAE 223 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fs-pdg~~L~s~s~ 223 (992)
.++...++.|..||..+. ....+..+...+++++|+ |+++.|++++.
T Consensus 244 wva~~~~~~v~~~d~~g~---------------------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTDGN---------------------------HIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEETTTEEEEECTTCC---------------------------EEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCEEEEECCCCC---------------------------EEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 777767788888887431 223344455678999998 88876655544
No 232
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.82 E-value=2.3e-05 Score=97.93 Aligned_cols=348 Identities=9% Similarity=0.100 Sum_probs=206.5
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccC-CCC-EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEH-EGP-VRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h-~~~-V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
|.++...++|...+ ++. +.|..||..+++.......+ ... |.++...+++.+. .|+.++-+..||..+++.....
T Consensus 133 i~~i~~d~~g~lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~ 209 (795)
T 4a2l_A 133 VNGIEEISPEQLLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIY-IGTSTDGLYTYSITQKTFEKVI 209 (795)
T ss_dssp CCEEEEEETTEEEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEE-EEESSSCEEEEETTTCCEEECC
T ss_pred EEEEEECCCCCEEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEE-EEECCCCEEEEeCCCCeEEEec
Confidence 77888887776444 444 45889997776533211111 123 8889888888644 4666556888998777654321
Q ss_pred -ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec-------CCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 90 -LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTG-------HNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 90 -~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~-------h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
..+...|.++...+++. +..|+.++-+..||..+++....... ....|.++...++|.+. .|+.+ -|.+
T Consensus 210 ~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~ 286 (795)
T 4a2l_A 210 PILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNI 286 (795)
T ss_dssp ----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEE
T ss_pred CCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhhe
Confidence 12356788888887766 55566554589999887665433221 13569999998888744 45555 4888
Q ss_pred EECCCCccccccC---------C---------------cccCCCeEEEEEccCCcceEEEEEe----ccCCCeEEEEEcC
Q psy2685 162 WDISGLRKKNVAP---------G---------------MGADDRQIKLWRMNDSKAWEVDIFR----GHYNNVSCVLFHP 213 (992)
Q Consensus 162 wd~~~~~~~~~~~---------~---------------~~~~d~~I~iwd~~~~~~~~i~~l~----~h~~~V~~v~fsp 213 (992)
||..+........ . .++.++.+..++............. -....|.++...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 8876543221110 0 3444566666665544321111100 1234689999988
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEeecc--------Ccccc------cCE-EEEEeCCCeEEEEECCCCeEEEEee-
Q psy2685 214 KSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE--------QERFW------SEV-IVSNAEDKSIRLWDMTKRTCLNTFR- 277 (992)
Q Consensus 214 dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~--------~~~~~------s~~-l~sgs~Dg~I~vwd~~t~~~v~~l~- 277 (992)
+|.+ ..|+.++-+..||..++......... ...+. ... +..|+.++-+..+|..+++...-..
T Consensus 367 ~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 367 DKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp TSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 8874 55777777899998876543221111 11121 133 7778887889999988876433221
Q ss_pred ---cCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcce----------------E---EeeccEEEEEeCCeEEEEEe
Q psy2685 278 ---REQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPA----------------Y---TVHNNVMYYVKERFLHRLDL 335 (992)
Q Consensus 278 ---~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~----------------~---~~~~~~v~~~~~~~i~i~dl 335 (992)
.+...|.++...++|++.+... +|+.+|+..+.... . ....+.+++...+-+..||.
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~ 524 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQ 524 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeC
Confidence 1345799999999998766554 88888875433211 1 11223455555566777777
Q ss_pred eCCCceEEEEe--e--cCCCccceeEEEccCCCEEEEE
Q psy2685 336 TNSKDSVVMQL--R--GGGRIPAHSISYNATEHSILVT 369 (992)
Q Consensus 336 ~~~~~~~v~~l--~--~~~~~~I~~lafspdg~~lav~ 369 (992)
.+... .... . ......|.++...++|...+.+
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 65432 1110 0 1123467888888999865543
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.82 E-value=2.3e-05 Score=88.22 Aligned_cols=253 Identities=9% Similarity=0.054 Sum_probs=156.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEccC---------CCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec
Q psy2685 63 QPIFVSGGDDYKIKVWNYKQRKCIFTLLGH---------LDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTG 133 (992)
Q Consensus 63 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---------~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~ 133 (992)
+..+++++.++.|..+|..+|+.+...... ...+.+.. ..++..+++++.++.|..+|.++++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 567888888999999999999988776542 12232222 22456788899999999999999998877765
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcC
Q psy2685 134 HNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHP 213 (992)
Q Consensus 134 h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fsp 213 (992)
........... +..+++++.++.+..+|..+++ .+|...... ..........++ ..
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~---------------~~W~~~~~~--~~~~~~~~~~~~----~~- 187 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGA---------------VKWTVNLDM--PSLSLRGESAPT----TA- 187 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCC---------------EEEEEECCC-------CCCCCCE----EE-
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCc---------------EEEEEeCCC--CceeecCCCCcE----EE-
Confidence 43322222222 4578888889999999987532 123332221 111111112221 11
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEeeccC---------------c-ccccCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy2685 214 KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQ---------------E-RFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR 277 (992)
Q Consensus 214 dg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~---------------~-~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~ 277 (992)
+..++.++.++.+..+|..+|+.+....... . ...+..++.++.++.+..+|..+++.+....
T Consensus 188 -~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 188 -FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp -TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred -CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 3467778889999999999998876655321 1 1124678888889999999999998876654
Q ss_pred cCCCCEEEEEEeCCCCEEEEEE-CCCEEEEEecCCcceE-------------EeeccEEEEEe-CCeEEEEEeeCCCceE
Q psy2685 278 REQERFWVLVAHPTLNLFAAGH-DAGMVVFKFERERPAY-------------TVHNNVMYYVK-ERFLHRLDLTNSKDSV 342 (992)
Q Consensus 278 ~h~~~V~~la~spdg~~Lasgs-ddgiivw~l~~~~~~~-------------~~~~~~v~~~~-~~~i~i~dl~~~~~~~ 342 (992)
. .....+... +..+.+++ ++++..++..+++..+ ...++.++... ++.+..+|..+++..-
T Consensus 267 ~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 267 L--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp C--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred C--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 2 233333332 33333333 3345544443333322 23455666664 5679999988877544
Q ss_pred EEE
Q psy2685 343 VMQ 345 (992)
Q Consensus 343 v~~ 345 (992)
...
T Consensus 343 ~~~ 345 (376)
T 3q7m_A 343 QQK 345 (376)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=2.2e-09 Score=121.96 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=111.6
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCC-eE-
Q psy2685 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHY-VM- 139 (992)
Q Consensus 62 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~-V~- 139 (992)
++..+++++.||.|..||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||.++++.+.....+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999999988876 45555556677777888889999999999998877665433211 10
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE
Q psy2685 140 CAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV 219 (992)
Q Consensus 140 sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~ 219 (992)
+..+. ++..+++++.|+.++.||..+++. +|.... +. ...++|++..++
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~---------------~w~~~~-----------~~----~~~~~p~~~~v~ 134 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEK---------------QQTLSS-----------AF----ADSLSPSTSLLY 134 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------------------------------EE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcE---------------EEEecC-----------CC----cccccccCCEEE
Confidence 00111 345677888899999999876432 232221 11 123456788899
Q ss_pred EEeCCCeEEEEECCCCeeeeEeecc--Cccc-cc-----CEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy2685 220 SNAEDKSIRLWDMTKRTCLNTFRRE--QERF-WS-----EVIVSNAEDKSIRLWDMTKRTCLNTFRR 278 (992)
Q Consensus 220 s~s~Dg~I~vwdl~~~~~l~~~~~~--~~~~-~s-----~~l~sgs~Dg~I~vwd~~t~~~v~~l~~ 278 (992)
+++.|+.|+.||..+|+.+..+... .... .. ..+++++.||.+..||..+++.+.++..
T Consensus 135 ~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 135 LGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9999999999999998876554321 1111 11 5678889999999999999998877763
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.77 E-value=8.3e-08 Score=105.75 Aligned_cols=253 Identities=13% Similarity=0.042 Sum_probs=162.3
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q psy2685 11 RVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 90 (992)
.+.++...+++. +.+++.+ |..+|. +++.+..+............. +..+..++.++.+..+|.. ++......
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 345666666665 4444434 888884 555443333222222233333 4567788889999999988 77776666
Q ss_pred cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccc
Q psy2685 91 GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK 170 (992)
Q Consensus 91 ~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~ 170 (992)
.+...+.++...+++. +..++.++.|..+|.. ++....+......+.++...+++.+.+ ++ +.+..+| .+..
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-- 205 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT-- 205 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC--
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc--
Confidence 5555566677777776 6668888999999988 877777766666677777877777444 44 7788888 3311
Q ss_pred cccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCccc--
Q psy2685 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF-- 248 (992)
Q Consensus 171 ~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~-- 248 (992)
.+|. .......+.++...++|. |..++.++.+..+|. ++..+..+.......
T Consensus 206 -------------~~~~-----------~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~ 259 (330)
T 3hxj_A 206 -------------EKWN-----------FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESS 259 (330)
T ss_dssp -------------EEEE-----------ECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred -------------EEEE-----------EccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcccc
Confidence 1122 222334577778888875 455667788888874 555555554332211
Q ss_pred ---c-cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEE
Q psy2685 249 ---W-SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVF 306 (992)
Q Consensus 249 ---~-s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw 306 (992)
. ...+..++.+|.+..+|. +++.+..+......+.++...++|++.+ |+.+|.+.+
T Consensus 260 ~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~ 319 (330)
T 3hxj_A 260 PVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYA 319 (330)
T ss_dssp CEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEE
T ss_pred ceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEE
Confidence 1 367888888989999995 6777777665556677778878888665 556666544
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=7.6e-06 Score=87.65 Aligned_cols=246 Identities=10% Similarity=0.060 Sum_probs=152.7
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeE-----EEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEccCCC
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTL-----LEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQRKCIFTLLGHLD 94 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~-----~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l~~h~~ 94 (992)
|++|+.+. .+.|+.+++..... ...+........+++|++++..|..+. .++.|.+++...+...........
T Consensus 1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CcEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34566665 35788898765432 111222234578999999776666554 578999999876654333333335
Q ss_pred CEEEEEEecCCCEEEEE-ECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC---CCeEEEEECCCCccc
Q psy2685 95 YIRTTFFHHEYPWILSA-SDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL---DQTIRVWDISGLRKK 170 (992)
Q Consensus 95 ~V~~i~fspd~~~L~sg-s~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~ 170 (992)
....+++++++..++.+ ...+.|.+++++.................++++|++..+..+.. .+.|..+++.+...
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~- 158 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR- 158 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence 68999999976655554 45689999998754332223323356789999997666555543 35676666653210
Q ss_pred cccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeeEeeccCcc--
Q psy2685 171 NVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTKRTCLNTFRREQER-- 247 (992)
Q Consensus 171 ~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~-- 247 (992)
.. ...........++++|++..| ++....+.|.++|...............+
T Consensus 159 ------------------------~~-~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~g 213 (267)
T 1npe_A 159 ------------------------RI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFA 213 (267)
T ss_dssp ------------------------EE-EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEE
T ss_pred ------------------------EE-EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceE
Confidence 10 111223457889999986655 55556789999999765433333221111
Q ss_pred --ccc-CEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCEEEEEEeCCCC
Q psy2685 248 --FWS-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQ-ERFWVLVAHPTLN 293 (992)
Q Consensus 248 --~~s-~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~-~~V~~la~spdg~ 293 (992)
..+ .++++...++.|..+|..+++.+.++.... ...+.+++.|++.
T Consensus 214 i~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 214 VTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 112 344555567899999999999888886443 2467788888765
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=5.1e-07 Score=101.03 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=134.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc-----CCeEEEEEcCCCeEEEEeccC------CCCEEEEEEecCCCEE-EEEE---C
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLH-----NGVIQLWDYRMNTLLEKFDEH------EGPVRGICFHNQQPIF-VSGG---D 71 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~-----dg~I~IWd~~~g~~~~~~~~h------~~~V~~l~fspdg~~L-asgs---~ 71 (992)
+|-..+.+++++|+++++++-.. ++.|.+||..+++.+..+... ...+..++++|++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 35578999999999876555433 578999999999877766432 2356899999875555 4444 5
Q ss_pred CCeEEEEEcCCCeEEEEEccCC-----------------------------CCEEEEEEecCCCEEEEEECCC-eEEEEE
Q psy2685 72 DYKIKVWNYKQRKCIFTLLGHL-----------------------------DYIRTTFFHHEYPWILSASDDQ-TIRIWN 121 (992)
Q Consensus 72 Dg~I~VWd~~t~~~~~~l~~h~-----------------------------~~V~~i~fspd~~~L~sgs~Dg-~I~vwd 121 (992)
++.|.+||..+++....+.+|. ..+..++|+|+++.|+++..++ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 7899999999887766554321 2368899999999888887766 444444
Q ss_pred CC---CCe-----eE--EEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCC
Q psy2685 122 WQ---SRN-----CI--CVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191 (992)
Q Consensus 122 l~---t~~-----~i--~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~ 191 (992)
.. .+. .. ....++......++++++|+++++...++.|.+||..+ +.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~--------------G~~~------- 282 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD--------------RAYK------- 282 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT--------------TEEE-------
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC--------------CCEE-------
Confidence 31 110 00 01123344566789999999888888889999999732 1111
Q ss_pred cceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy2685 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLW 230 (992)
Q Consensus 192 ~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vw 230 (992)
.+.. ..+...+.+++|.+++.++++.+..+.+.+|
T Consensus 283 ---~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 283 ---LLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ---EEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ---EEEE-CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 1111 1234568899999999988887765544433
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.71 E-value=1.1e-07 Score=104.77 Aligned_cols=251 Identities=10% Similarity=-0.042 Sum_probs=152.9
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCC
Q psy2685 15 LSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLD 94 (992)
Q Consensus 15 iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~ 94 (992)
.....++. +.+++.++.|..|| .+++....+..+...+.++...++|. +..++.+ +..+|. +++....+.....
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 34444554 66677788899999 88988776665555567777777775 4444444 888885 5543322222222
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccC
Q psy2685 95 YIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAP 174 (992)
Q Consensus 95 ~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~ 174 (992)
........ +..+.+++.++.+..+|.+ ++.......+...+.++...+++. +..++.++.+..+|.. ..
T Consensus 99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~------ 167 (330)
T 3hxj_A 99 IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT------ 167 (330)
T ss_dssp --CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC------
T ss_pred cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC------
Confidence 22223333 4568888889999999988 777777766666666777777766 6667778889888876 21
Q ss_pred CcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccc-----
Q psy2685 175 GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFW----- 249 (992)
Q Consensus 175 ~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~----- 249 (992)
...........+.++...+++.+.+ ++ +.+..+| .+++....+......+.
T Consensus 168 --------------------~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~ 223 (330)
T 3hxj_A 168 --------------------EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS 223 (330)
T ss_dssp --------------------EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred --------------------EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence 1111222234456667777777554 44 7889999 67766655543332222
Q ss_pred -cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEE
Q psy2685 250 -SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFK 307 (992)
Q Consensus 250 -s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~ 307 (992)
...+..++.++.+..+|. ++..+..+......+.++.+.+++.+.+...++++..++
T Consensus 224 ~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 224 EDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp TTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred CCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence 136777888888888874 556555555444334445555566554443333454443
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.67 E-value=5.9e-06 Score=94.11 Aligned_cols=265 Identities=12% Similarity=0.101 Sum_probs=156.3
Q ss_pred eEEEEEcCC-----CeEEEEecc-C-CCCEEEEEE-----------e--cCCCEEEE-EECCCeEEEEEcCCC----eEE
Q psy2685 32 VIQLWDYRM-----NTLLEKFDE-H-EGPVRGICF-----------H--NQQPIFVS-GGDDYKIKVWNYKQR----KCI 86 (992)
Q Consensus 32 ~I~IWd~~~-----g~~~~~~~~-h-~~~V~~l~f-----------s--pdg~~Las-gs~Dg~I~VWd~~t~----~~~ 86 (992)
.+.+.|+.. ++.+..+.- + ......+.| + +++++|++ +..++.|.|.|..+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 466777765 666665532 1 112333344 6 77886665 556889999998765 666
Q ss_pred EEEc------c-CCCCEEEEEEecCCCEEEEEECC------CeEEEEECCCCeeEEEEecCC---CCeEEEEEecCCCEE
Q psy2685 87 FTLL------G-HLDYIRTTFFHHEYPWILSASDD------QTIRIWNWQSRNCICVLTGHN---HYVMCAQFHPTDDIV 150 (992)
Q Consensus 87 ~~l~------~-h~~~V~~i~fspd~~~L~sgs~D------g~I~vwdl~t~~~i~~l~~h~---~~V~sl~fspdg~~L 150 (992)
.++. . .......+..+|+| .++++..+ |.|.++|.++++.+.++.... ..-..+-|+|+++.+
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence 6663 1 11245678889999 77766555 789999999999998886322 223467889999988
Q ss_pred EEEE-------------------CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEec--cCCCeEEE
Q psy2685 151 VSAS-------------------LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRG--HYNNVSCV 209 (992)
Q Consensus 151 ~sgs-------------------~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~--h~~~V~~v 209 (992)
+++. .+.+|.+||+.+. + ...++.. .......+
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------------------------k--~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------------------------K--RIHSLTLGEENRMALEL 256 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------------------------E--EEEEEESCTTEEEEEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCC------------------------c--EeeEEecCCCCCcccee
Confidence 8874 2456666666542 1 2222222 11223445
Q ss_pred EE--cCCCCEEEEEe------CCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEEee----
Q psy2685 210 LF--HPKSEVIVSNA------EDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNTFR---- 277 (992)
Q Consensus 210 ~f--spdg~~L~s~s------~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~---- 277 (992)
.| +|+++++.+++ .+++|.+|....+... .+.+.|+.+.+....+.
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~----------------------~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN----------------------AEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE----------------------EEEEEEECCEECCSSCCGGGG
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee----------------------EEEEEeCCCcccccccccccc
Confidence 55 99999887776 4568887765433210 01222332221111110
Q ss_pred ---cCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcceEEeeccEEEEEeCCeEEEEEeeCC-CceEEEEeecCC---
Q psy2685 278 ---REQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNS-KDSVVMQLRGGG--- 350 (992)
Q Consensus 278 ---~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~-~~~~v~~l~~~~--- 350 (992)
+-......+.+||||++|.++... .+.|.+||+... ....+..+..+.
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg-------------------------~d~VavfdV~d~~~~~lv~~I~tGG~~~ 369 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWG-------------------------IGEVRQYDISNPFKPVLTGKVKLGGIFH 369 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETT-------------------------TTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCC-------------------------CCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence 002346778999999998877532 123344444321 112222222110
Q ss_pred ----------CccceeEEEccCCCEEEEEe
Q psy2685 351 ----------RIPAHSISYNATEHSILVTT 370 (992)
Q Consensus 351 ----------~~~I~~lafspdg~~lav~~ 370 (992)
...+..++++|||++|.++.
T Consensus 370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 370 RADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 12478999999999999887
No 240
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.00022 Score=88.80 Aligned_cols=328 Identities=10% Similarity=0.023 Sum_probs=194.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec-------cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD-------EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~-------~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
..|.++...+++.+. .|+.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 568899888888744 45545 58899977665432211 1245799999988885 55566655688899877
Q ss_pred CeEEEEEc--------------cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe---------cCCCCeE
Q psy2685 83 RKCIFTLL--------------GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT---------GHNHYVM 139 (992)
Q Consensus 83 ~~~~~~l~--------------~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~---------~h~~~V~ 139 (992)
+....... -....|.++...++|. |..|+.++-|..++..++....... .....|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 65432211 1245789999888876 6778877789999987654322211 0235689
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE
Q psy2685 140 CAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV 219 (992)
Q Consensus 140 sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~ 219 (992)
++...+++. +..|+.++-+..||..+.. +..+. . ........|.++...++|.+.+
T Consensus 367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--------------~~~~~--~-------~~~~~~~~v~~i~~d~~g~lWi 422 (781)
T 3v9f_A 367 SVCDDGQGK-LWIGTDGGGINVFENGKRV--------------AIYNK--E-------NRELLSNSVLCSLKDSEGNLWF 422 (781)
T ss_dssp EEEECTTSC-EEEEEBSSCEEEEETTEEE--------------EECC--------------CCCSBEEEEEECTTSCEEE
T ss_pred EEEEcCCCC-EEEEeCCCcEEEEECCCCe--------------EEEcc--C-------CCCCCCcceEEEEECCCCCEEE
Confidence 998888776 5566666668888875421 11110 0 0012346688998888887554
Q ss_pred EEeCCCeEEEEECCCCeeeeEeec---cCcccc------cCEEEEEeCCCeEEEEECCCCeEEEEeecC-----CCCEEE
Q psy2685 220 SNAEDKSIRLWDMTKRTCLNTFRR---EQERFW------SEVIVSNAEDKSIRLWDMTKRTCLNTFRRE-----QERFWV 285 (992)
Q Consensus 220 s~s~Dg~I~vwdl~~~~~l~~~~~---~~~~~~------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h-----~~~V~~ 285 (992)
|+.++-+..+|..+++... +.. ....+. ...+..|+. +-+..+|..+++........ ...|.+
T Consensus 423 -gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 423 -GTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp -EETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred -EeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 6766778889887765332 221 111111 145666666 56888898776543322222 357899
Q ss_pred EEEeCCCCEEEEEECCCEEEEEecCCcce-------------EEe---eccEEEEEeCCeE-EEEEeeCCCceEEEEeec
Q psy2685 286 LVAHPTLNLFAAGHDAGMVVFKFERERPA-------------YTV---HNNVMYYVKERFL-HRLDLTNSKDSVVMQLRG 348 (992)
Q Consensus 286 la~spdg~~Lasgsddgiivw~l~~~~~~-------------~~~---~~~~v~~~~~~~i-~i~dl~~~~~~~v~~l~~ 348 (992)
+...++|.+.+....+|+..++....... ..+ ..+.+++....-+ ..||..+.+.. .+....
T Consensus 500 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~ 578 (781)
T 3v9f_A 500 IAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKE 578 (781)
T ss_dssp EEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGG
T ss_pred EEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccC
Confidence 99999999877665588887765432211 111 2234555554445 66665443321 111111
Q ss_pred C-CCccceeEEEccCCCEEEEE
Q psy2685 349 G-GRIPAHSISYNATEHSILVT 369 (992)
Q Consensus 349 ~-~~~~I~~lafspdg~~lav~ 369 (992)
+ ....|.++...++|..-+.+
T Consensus 579 gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 579 GLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp TCSCCCCCEEEECSSSCEEEEC
T ss_pred CCCCceEEEEEECCCCCEEEEc
Confidence 1 23457788888888866654
No 241
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=0.0012 Score=82.15 Aligned_cols=356 Identities=8% Similarity=0.008 Sum_probs=208.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEe-c---c---CCCCEEEEEEec--CCCEEEEEECCCeEEEEEc
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKF-D---E---HEGPVRGICFHN--QQPIFVSGGDDYKIKVWNY 80 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~-~---~---h~~~V~~l~fsp--dg~~Lasgs~Dg~I~VWd~ 80 (992)
..|.++.-.+++..|.+|+.++-+..||..+++...-. . . ....|.++...+ +|. +..++.++-+..+|.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEEC
Confidence 45899998888874666777746999998877654321 1 0 123688888877 665 555664556888998
Q ss_pred CCCeEEEEEc-----cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe-------cCCCCeEEEEEecCCC
Q psy2685 81 KQRKCIFTLL-----GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT-------GHNHYVMCAQFHPTDD 148 (992)
Q Consensus 81 ~t~~~~~~l~-----~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~-------~h~~~V~sl~fspdg~ 148 (992)
.+++...... .....|.++...+++. +..|+.++-+..||..+++...... -....|.++...+++.
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 223 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN 223 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC
Confidence 7776543211 1234588888777765 5557777668999988765432211 1135689998888877
Q ss_pred EEEEEECCCeEEEEECCCCccccccC----------C--------------cccCCCeEEEEEccCCcceEEEE------
Q psy2685 149 IVVSASLDQTIRVWDISGLRKKNVAP----------G--------------MGADDRQIKLWRMNDSKAWEVDI------ 198 (992)
Q Consensus 149 ~L~sgs~Dg~I~iwd~~~~~~~~~~~----------~--------------~~~~d~~I~iwd~~~~~~~~i~~------ 198 (992)
+.+ |+.+ -+..||..+........ . +++..+.+..++..+........
T Consensus 224 lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 224 IWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp EEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEE
T ss_pred EEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 544 4555 58889876543221110 0 33443566677765544211111
Q ss_pred -E-----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeec---------cCcccc------cCEEEEEe
Q psy2685 199 -F-----RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRR---------EQERFW------SEVIVSNA 257 (992)
Q Consensus 199 -l-----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~---------~~~~~~------s~~l~sgs 257 (992)
. ......|.++...++|. |..|+.++-|..++..++........ ....+. ...+..|+
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt 380 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT 380 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE
T ss_pred cCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe
Confidence 0 01245689999998886 55677677788888776432221100 011111 14566777
Q ss_pred CCCeEEEEECCCCeEEEEe---ecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecCCcc------------eEEe---ec
Q psy2685 258 EDKSIRLWDMTKRTCLNTF---RREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERERP------------AYTV---HN 319 (992)
Q Consensus 258 ~Dg~I~vwd~~t~~~v~~l---~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~~~~------------~~~~---~~ 319 (992)
.++-|..+|..++....-. ......|.++...++|.+.+....+|+..++..+.+. +..+ ..
T Consensus 381 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 381 DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN 460 (781)
T ss_dssp BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT
T ss_pred CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC
Confidence 6777888887754332111 1234679999998888877754457777776533221 1111 23
Q ss_pred cEEEEEeCCeEEEEEeeCCCceEEEEeec--CCCccceeEEEccCCCEEEEEe
Q psy2685 320 NVMYYVKERFLHRLDLTNSKDSVVMQLRG--GGRIPAHSISYNATEHSILVTT 370 (992)
Q Consensus 320 ~~v~~~~~~~i~i~dl~~~~~~~v~~l~~--~~~~~I~~lafspdg~~lav~~ 370 (992)
+.++.....-+..+|..+++......... .....|.++...++|...+.+.
T Consensus 461 g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 461 KKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp SEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred CCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 45666666677778876554333221110 0135678888999988666443
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.58 E-value=8.3e-07 Score=100.16 Aligned_cols=210 Identities=5% Similarity=-0.105 Sum_probs=127.5
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEE----------cCCeEEEEEcCCCeEEEEeccCC-------CCEEEEEEecCCCE
Q psy2685 3 TKFETKSARVKGLSFHPKRPWILSSL----------HNGVIQLWDYRMNTLLEKFDEHE-------GPVRGICFHNQQPI 65 (992)
Q Consensus 3 ~~l~~H~~~V~~iafspdg~~Lasg~----------~dg~I~IWd~~~g~~~~~~~~h~-------~~V~~l~fspdg~~ 65 (992)
.++.....+ .+.++||+++++++. .++.|.+||..+++.+.++.... .....++++|||++
T Consensus 60 ~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~ 137 (368)
T 1mda_H 60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137 (368)
T ss_dssp EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 344444455 799999999999886 36889999999999999886431 23467999999999
Q ss_pred EEEEEC--CCeEEE--EEcCCCeEEEEEccCCC-CE------EEEEE---------------------------------
Q psy2685 66 FVSGGD--DYKIKV--WNYKQRKCIFTLLGHLD-YI------RTTFF--------------------------------- 101 (992)
Q Consensus 66 Lasgs~--Dg~I~V--Wd~~t~~~~~~l~~h~~-~V------~~i~f--------------------------------- 101 (992)
++++.. +..+.+ +|..+ +..+..... .+ .-+.+
T Consensus 138 lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred EEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence 998864 467888 88866 222211000 00 00111
Q ss_pred ----ecCCCEEEEEECCCeEEEEECCCCe--eEEEEec-------C---CCCeEEEEEecCCCEEEEEEC-C--------
Q psy2685 102 ----HHEYPWILSASDDQTIRIWNWQSRN--CICVLTG-------H---NHYVMCAQFHPTDDIVVSASL-D-------- 156 (992)
Q Consensus 102 ----spd~~~L~sgs~Dg~I~vwdl~t~~--~i~~l~~-------h---~~~V~sl~fspdg~~L~sgs~-D-------- 156 (992)
++++..++..+. +.+.+.|..++. .+..+.- + ......+.++|+++.++++.. +
T Consensus 215 ~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~ 293 (368)
T 1mda_H 215 QAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp CCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred CccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence 222222333333 555555654321 1111110 0 011112678888887776533 2
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCC
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNA-EDKSIRLWDMTK 234 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s-~Dg~I~vwdl~~ 234 (992)
+.+.++|..+.+. +..+... .....+.|+|||+ ++++.. .+++|.++|+.+
T Consensus 294 ~~~~ViD~~t~~v--------------------------v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 294 ENTSSVTASVGQT--------------------------SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEEEEESSSCCE--------------------------EECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CCEEEEECCCCeE--------------------------EEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 2455777765432 2222211 1477899999997 566666 599999999999
Q ss_pred CeeeeEeeccC
Q psy2685 235 RTCLNTFRREQ 245 (992)
Q Consensus 235 ~~~l~~~~~~~ 245 (992)
++.+.++....
T Consensus 347 ~kvv~~I~vg~ 357 (368)
T 1mda_H 347 DQDQSSVELDK 357 (368)
T ss_dssp CEEEEECCCCS
T ss_pred CcEEEEEECCC
Confidence 99988886443
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.50 E-value=0.00011 Score=78.59 Aligned_cols=205 Identities=10% Similarity=-0.008 Sum_probs=131.0
Q ss_pred CEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCCeEEEE
Q psy2685 11 RVKGLSFHPKRPWILSSL-HNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG-GDDYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~-~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~VWd~~t~~~~~~ 88 (992)
.+.+++|+|++..|..+. .++.|..++...+.....+........+++++|++..++.+ ..++.|.+++.........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999776666554 46899999987654433333333567999999976655555 4567999999865432222
Q ss_pred EccCCCCEEEEEEecCCCEEEEEEC---CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEE-ECCCeEEEEEC
Q psy2685 89 LLGHLDYIRTTFFHHEYPWILSASD---DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSA-SLDQTIRVWDI 164 (992)
Q Consensus 89 l~~h~~~V~~i~fspd~~~L~sgs~---Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~Dg~I~iwd~ 164 (992)
..........++++|++..+..+.. .+.|..++++.................++++|++..|..+ ...+.|..+|.
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 2222356789999997666665554 3688888876433222222334567899999987665544 45577888887
Q ss_pred CCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeec
Q psy2685 165 SGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRR 243 (992)
Q Consensus 165 ~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~ 243 (992)
.+.. . .....+ ......++.. ++.++++....+.|.++|..+++.+..+..
T Consensus 197 ~g~~--------------~------------~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 197 AQPG--------------R------------RKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TEEE--------------E------------EEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCCc--------------e------------EEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 6421 0 111111 1223455554 444555555678999999999988877754
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.50 E-value=3.1e-06 Score=99.63 Aligned_cols=199 Identities=10% Similarity=0.054 Sum_probs=136.0
Q ss_pred CCCCEEEEEEc-CCeEEEEEcCCCeEEEEecc-CCCCEEEEEE-e-cCCCEEEEEE------------------CCCeEE
Q psy2685 19 PKRPWILSSLH-NGVIQLWDYRMNTLLEKFDE-HEGPVRGICF-H-NQQPIFVSGG------------------DDYKIK 76 (992)
Q Consensus 19 pdg~~Lasg~~-dg~I~IWd~~~g~~~~~~~~-h~~~V~~l~f-s-pdg~~Lasgs------------------~Dg~I~ 76 (992)
|||+++.+... ++.|.+.|+.+.+....++- ......++++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888888765 56799999999998775432 2345889998 5 9999998885 246899
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCC--------------------------------------eEE
Q psy2685 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQ--------------------------------------TIR 118 (992)
Q Consensus 77 VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg--------------------------------------~I~ 118 (992)
+.|..+.+...++.--. ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999888876332 456788999999999888553 467
Q ss_pred EEECCC--Cee-EEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 119 IWNWQS--RNC-ICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 119 vwdl~t--~~~-i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
|.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+..... ++.+ .... .
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--------~~~l-----~~~~-~ 322 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--------YENA-----DPRS-A 322 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--------HSCC-----CGGG-G
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--------cccc-----Cccc-c
Confidence 777776 444 444432 23456789999999776665 57889999987532100 0000 0000 0
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy2685 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 195 ~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~ 234 (992)
..... .-......++|+|+|...++...|+.|.+||+.+
T Consensus 323 v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 323 VVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred eEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 11111 1224567899999996556677799999998765
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.48 E-value=3e-05 Score=82.96 Aligned_cols=206 Identities=4% Similarity=-0.063 Sum_probs=131.2
Q ss_pred CEEEEEEcCCCCEEEEEEc--CCeEEEEEcCCCeEEEEeccCCC-CEEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEE
Q psy2685 11 RVKGLSFHPKRPWILSSLH--NGVIQLWDYRMNTLLEKFDEHEG-PVRGICFHNQQPIFVS-GGDDYKIKVWNYKQRKCI 86 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~~--dg~I~IWd~~~g~~~~~~~~h~~-~V~~l~fspdg~~Las-gs~Dg~I~VWd~~t~~~~ 86 (992)
....+.|+|++...++.+. ++.|.++|..+++.+.++..... ...+++++ ++.+.. ...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3689999998644444333 57999999999999888753222 23456665 445554 445889999999999999
Q ss_pred EEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCC-----CCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHN-----HYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 87 ~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~-----~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
.++...... ...+++++..++++..+++|.++|..+.+.+..+.-.. ..+..+.|. ++...+....++.|.+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 888533111 23456678777777778999999999988887776321 235677887 6655544445678888
Q ss_pred EECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q psy2685 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 162 wd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~vwdl~~ 234 (992)
.|..+.+. +..+++..........-.........++|+|+++ +++++...+.+.+.++..
T Consensus 177 ID~~tg~V-------------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 177 ISAKDGTL-------------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTTCCE-------------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EECCCCcE-------------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 88876432 2222221000000000000113568999999986 555666778888887654
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.48 E-value=2.9e-05 Score=94.94 Aligned_cols=275 Identities=8% Similarity=0.054 Sum_probs=165.4
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCC----CCEEE-EEEecCCCEEEEEEC------CCeEEEEEcCCCeEEEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHE----GPVRG-ICFHNQQPIFVSGGD------DYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~----~~V~~-l~fspdg~~Lasgs~------Dg~I~VWd~~t~~~~~~l 89 (992)
+..+++++.++.|..+|..+|+.+.++.... ..+.+ .... ++ .++++.. +|.|..+|..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888889999999999999988876421 11110 0111 33 5555543 589999999999998887
Q ss_pred ccCC---C----------------------------CEEEEEEecCCCEEEEEECCC-------------------eEEE
Q psy2685 90 LGHL---D----------------------------YIRTTFFHHEYPWILSASDDQ-------------------TIRI 119 (992)
Q Consensus 90 ~~h~---~----------------------------~V~~i~fspd~~~L~sgs~Dg-------------------~I~v 119 (992)
.... . ....+++.|+...++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 0 012367888888888887776 4999
Q ss_pred EECCCCeeEEEEec--CC-------CCeEEEEEecCCC---EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEE
Q psy2685 120 WNWQSRNCICVLTG--HN-------HYVMCAQFHPTDD---IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWR 187 (992)
Q Consensus 120 wdl~t~~~i~~l~~--h~-------~~V~sl~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd 187 (992)
+|.++|+.+..+.. |. .+.....+..+++ .++.++.+|.++++|..+++.....+.... .-..-++
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~d 352 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKV--TWAEKVD 352 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--CSEEEEC
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccc--ccccccc
Confidence 99999999988764 22 2333333344664 688999999999999887654311100000 0000001
Q ss_pred ccCCcc----------eEEEEEeccCC--CeEEEEEcCCCCEEEEE----------------------------------
Q psy2685 188 MNDSKA----------WEVDIFRGHYN--NVSCVLFHPKSEVIVSN---------------------------------- 221 (992)
Q Consensus 188 ~~~~~~----------~~i~~l~~h~~--~V~~v~fspdg~~L~s~---------------------------------- 221 (992)
...... .....+.+..+ .-..++++|+..++.+.
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 000000 00001111100 01125666765554432
Q ss_pred --eCCCeEEEEECCCCeeeeEeeccCccc------ccCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCE-EEEEEeCCC
Q psy2685 222 --AEDKSIRLWDMTKRTCLNTFRREQERF------WSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF-WVLVAHPTL 292 (992)
Q Consensus 222 --s~Dg~I~vwdl~~~~~l~~~~~~~~~~------~s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V-~~la~spdg 292 (992)
..+|.|..||..+|+.+-......... .+.+++.++.|+.++.||..+++.+..++...... .-+.+..+|
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence 134789999999999877665433221 13788889999999999999999998886543211 223444566
Q ss_pred C-EEEEEE
Q psy2685 293 N-LFAAGH 299 (992)
Q Consensus 293 ~-~Lasgs 299 (992)
+ ++++++
T Consensus 513 ~~yva~~~ 520 (668)
T 1kv9_A 513 RQYVAIMA 520 (668)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 444443
No 247
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.39 E-value=0.011 Score=71.20 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=94.6
Q ss_pred CCEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCeE-EEEeccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCCeEE
Q psy2685 10 ARVKGLSFHPKRPWILSSL-HNGVIQLWDYRMNTL-LEKFDEHEGPVRGICFHNQQPIFVSG-GDDYKIKVWNYKQRKCI 86 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~-~dg~I~IWd~~~g~~-~~~~~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~VWd~~t~~~~ 86 (992)
..+.+++|++.+..|..+. ..+.|..++...... ...+...-....++++++.+..|+.+ ...+.|.+.+.......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 4578999999777666554 467888888765432 23333333578999999966655554 45789999998755433
Q ss_pred EEEccCCCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEE
Q psy2685 87 FTLLGHLDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWD 163 (992)
Q Consensus 87 ~~l~~h~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd 163 (992)
......-...+.|++.|.+..|+.+.. .+.|...+++.................+++++++..|..+. ..+.|...|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 333344456788999997666665553 46677777654333233333344567777777654444433 334555555
Q ss_pred CCC
Q psy2685 164 ISG 166 (992)
Q Consensus 164 ~~~ 166 (992)
+.+
T Consensus 200 ~dG 202 (619)
T 3s94_A 200 LDG 202 (619)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.39 E-value=0.00011 Score=80.83 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=132.4
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEecc--------------------CCCCEEEEEEec-CCCEEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDE--------------------HEGPVRGICFHN-QQPIFVS 68 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~--------------------h~~~V~~l~fsp-dg~~Las 68 (992)
....+++|++++..+.++..++.|..||..++... .+.. ......++++++ ++ .|++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE
Confidence 45678899999987888888999999997765433 2211 113578999998 55 4556
Q ss_pred EECCCeEEEEEcCCCeEEEEEcc-----CCCCEEEEEEec-CCCEEEEEEC-----------------CCeEEEEECCCC
Q psy2685 69 GGDDYKIKVWNYKQRKCIFTLLG-----HLDYIRTTFFHH-EYPWILSASD-----------------DQTIRIWNWQSR 125 (992)
Q Consensus 69 gs~Dg~I~VWd~~t~~~~~~l~~-----h~~~V~~i~fsp-d~~~L~sgs~-----------------Dg~I~vwdl~t~ 125 (992)
+...+.|..+|..++.. ..+.. .......+++.+ +|.+.++-.. ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 65556688888765532 22211 123578899999 8886665432 367899998777
Q ss_pred eeEEEEecCCCCeEEEEEecCCCEEEEE-ECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCC
Q psy2685 126 NCICVLTGHNHYVMCAQFHPTDDIVVSA-SLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYN 204 (992)
Q Consensus 126 ~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~ 204 (992)
+...... .......++|+|+++.+..+ +.++.|..|++.+... +....+ .. ..+
T Consensus 176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-----------~~~~~~----------~~---~~g 230 (322)
T 2fp8_A 176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-----------GTAEVL----------VK---IPN 230 (322)
T ss_dssp EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-----------TCEEEE----------EE---CSS
T ss_pred EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-----------CccceE----------Ee---CCC
Confidence 6433322 22345678999999866555 5568899998865221 111111 11 122
Q ss_pred CeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeeEeecc
Q psy2685 205 NVSCVLFHPKSEVIVSNAE----------DKSIRLWDMTKRTCLNTFRRE 244 (992)
Q Consensus 205 ~V~~v~fspdg~~L~s~s~----------Dg~I~vwdl~~~~~l~~~~~~ 244 (992)
...+++.++|++.++... .+.|..+|.. ++.+..+...
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~ 278 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP 278 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC
Confidence 677899999987776654 4668888864 6666666544
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.39 E-value=4.7e-05 Score=93.08 Aligned_cols=215 Identities=11% Similarity=0.028 Sum_probs=125.9
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCC----------E-EEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGP----------V-RGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~----------V-~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 89 (992)
+..+++++.++.|.-+|..+|+.+.++...... + .+++. .+..+++++.|+.+..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 556788888999999999999999888643211 0 12233 2457888889999999999999998877
Q ss_pred ccCCCC-EEEEEEec--CCCEEEEEEC------CCeEEEEECCCCeeEEEEecCC---C---------------------
Q psy2685 90 LGHLDY-IRTTFFHH--EYPWILSASD------DQTIRIWNWQSRNCICVLTGHN---H--------------------- 136 (992)
Q Consensus 90 ~~h~~~-V~~i~fsp--d~~~L~sgs~------Dg~I~vwdl~t~~~i~~l~~h~---~--------------------- 136 (992)
...... ...+..+| .+..+++++. +|.|..+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 542110 00000011 1334555543 5899999999999998875311 0
Q ss_pred -------CeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccC------
Q psy2685 137 -------YVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHY------ 203 (992)
Q Consensus 137 -------~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~------ 203 (992)
....+++.|+...++.++.++.. |...... ...+-..-.+.|..+|..+++..=......|.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~--w~~~~~~---~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSP--WNREVRS---PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHS---TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCc--cccCCCC---CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 01246788888888888877641 2100000 00000000023444454444421111111121
Q ss_pred -CCeEEEEEcCCCC---EEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 204 -NNVSCVLFHPKSE---VIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 204 -~~V~~v~fspdg~---~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
.+.....+..+|+ .++.++.+|.+.++|..+|+.+....
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 2233333334564 68899999999999999999875443
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.37 E-value=0.00017 Score=86.39 Aligned_cols=273 Identities=10% Similarity=0.029 Sum_probs=159.8
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCC--C--CEEE-EEEecCCCEEEEEEC------CCeEEEEEcCCCeEEEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHE--G--PVRG-ICFHNQQPIFVSGGD------DYKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~--~--~V~~-l~fspdg~~Lasgs~------Dg~I~VWd~~t~~~~~~l 89 (992)
+..+++++.++.+..+|..+|+.+.++.... . .+.+ .... ++ .+++++. +|.|..+|..+|+.+.++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999888765321 0 1111 0111 33 5566554 799999999999998877
Q ss_pred ccCCCC-------------------------------------E-EEEEEecCCCEEEEEECC----------------C
Q psy2685 90 LGHLDY-------------------------------------I-RTTFFHHEYPWILSASDD----------------Q 115 (992)
Q Consensus 90 ~~h~~~-------------------------------------V-~~i~fspd~~~L~sgs~D----------------g 115 (992)
...... + ..+++.++...++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532110 0 124566666677666532 3
Q ss_pred eEEEEECCCCeeEEEEecC--C--------CCeEEEEEecCCC---EEEEEECCCeEEEEECCCCccccccCCcccCCCe
Q psy2685 116 TIRIWNWQSRNCICVLTGH--N--------HYVMCAQFHPTDD---IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQ 182 (992)
Q Consensus 116 ~I~vwdl~t~~~i~~l~~h--~--------~~V~sl~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~ 182 (992)
.|..+|.++++.+..+... . .++. +...++|+ .++.++.+|.+.++|..+++..-........ .-
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~-~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV-NV 350 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC-CS
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc-cc
Confidence 6999999999998887632 1 2221 22334663 5778889999999998775432111000000 00
Q ss_pred EEEEEccCCcc------------eEEEEEeccCC--CeEEEEEcCCCCEEEEEe--------------------------
Q psy2685 183 IKLWRMNDSKA------------WEVDIFRGHYN--NVSCVLFHPKSEVIVSNA-------------------------- 222 (992)
Q Consensus 183 I~iwd~~~~~~------------~~i~~l~~h~~--~V~~v~fspdg~~L~s~s-------------------------- 222 (992)
..-.+..++.. .......+..+ .-..++++|+..++.+.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 00000001000 00000111000 012456777776666553
Q ss_pred -----------CCCeEEEEECCCCeeeeEeeccCc----ccc--cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-EE
Q psy2685 223 -----------EDKSIRLWDMTKRTCLNTFRREQE----RFW--SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER-FW 284 (992)
Q Consensus 223 -----------~Dg~I~vwdl~~~~~l~~~~~~~~----~~~--s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~-V~ 284 (992)
.++.+..||..+++.+-++..... ... +..++.++.|+.++.+|..+++.+.++...... -.
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 357899999999988776654321 111 367788999999999999999999888644321 12
Q ss_pred EEEEeCCCCEEEE
Q psy2685 285 VLVAHPTLNLFAA 297 (992)
Q Consensus 285 ~la~spdg~~Las 297 (992)
.+.+..+|+.+++
T Consensus 511 p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 511 PMTYSFKGKQYIG 523 (571)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEECCEEEEE
Confidence 2345566664443
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.34 E-value=3.4e-05 Score=81.83 Aligned_cols=200 Identities=11% Similarity=0.083 Sum_probs=129.6
Q ss_pred EEeecCCCC--EEEEEEcCCCCEEEEEEcCC--eEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEE
Q psy2685 3 TKFETKSAR--VKGLSFHPKRPWILSSLHNG--VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKV 77 (992)
Q Consensus 3 ~~l~~H~~~--V~~iafspdg~~Lasg~~dg--~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~V 77 (992)
+++ .|... ...+.|+ ++.+..+++.+| .|+++|..+|+.+.++.... ...+....++++.|.... .++.+.+
T Consensus 35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 344 45544 4789998 666666666665 89999999999988886433 333333333455555544 5889999
Q ss_pred EEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecC--C---CCeEEEEEecCCCEEEE
Q psy2685 78 WNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGH--N---HYVMCAQFHPTDDIVVS 152 (992)
Q Consensus 78 Wd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h--~---~~V~sl~fspdg~~L~s 152 (992)
+|..+.+.+.++..... ...+++++..|+.+..++.|.++|..+.+.+.++... . ..+..+.|. +|...+.
T Consensus 112 ~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 99999999988864322 2233456776766666788999999999888776642 1 234557776 6665555
Q ss_pred EECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q psy2685 153 ASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223 (992)
Q Consensus 153 gs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~ 223 (992)
.-.+..|.+.|..+++ .+..+++..-..... .........+.++|+|+++.|.+.+.
T Consensus 188 ~w~~~~I~vIDp~tG~-------------V~~~Id~~~L~~~~~-~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPETGK-------------VTGIIDLNGILAEAG-PLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTTCB-------------EEEEEECTTGGGGSC-SCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCCCc-------------EEEEEECCcCccccc-cccCcCCceEEEEEcCCCCEEEEECC
Confidence 5567788888887642 334444432111000 00111235688999998887776664
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.34 E-value=1.3e-05 Score=94.31 Aligned_cols=209 Identities=11% Similarity=0.046 Sum_probs=140.6
Q ss_pred EEEEEEcCCeEEEEEcCCCeEEEEecc---------------------------------CC------CCEEEEEEec--
Q psy2685 23 WILSSLHNGVIQLWDYRMNTLLEKFDE---------------------------------HE------GPVRGICFHN-- 61 (992)
Q Consensus 23 ~Lasg~~dg~I~IWd~~~g~~~~~~~~---------------------------------h~------~~V~~l~fsp-- 61 (992)
.+.+|+++|.++|+-+.+++.+..+.. +. +.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 366889999999999999888776520 00 1122244444
Q ss_pred ---CCCEEEEEEC-CCeEEEEEcCCCeEEEEEcc-CCCCEEEEEE-e-cCCCEEEEEE------------------CCCe
Q psy2685 62 ---QQPIFVSGGD-DYKIKVWNYKQRKCIFTLLG-HLDYIRTTFF-H-HEYPWILSAS------------------DDQT 116 (992)
Q Consensus 62 ---dg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~-h~~~V~~i~f-s-pd~~~L~sgs------------------~Dg~ 116 (992)
||+++.+... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7887777655 56899999999998885542 2345888888 5 8999998885 2468
Q ss_pred EEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCC---------------eEEEEECCCCccccccCCcccCCC
Q psy2685 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQ---------------TIRVWDISGLRKKNVAPGMGADDR 181 (992)
Q Consensus 117 I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg---------------~I~iwd~~~~~~~~~~~~~~~~d~ 181 (992)
+.++|.++.+...++.-.. ....++++|+|+++++++.+. .|.+.|+........ .+....-+
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~-~Gk~~~i~ 254 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA-AGDYQELN 254 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH-HTCSEEET
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc-CCCeeEEC
Confidence 9999999999888877433 346678999999999998763 466666532211000 00000014
Q ss_pred eEEEEEccC--CcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q psy2685 182 QIKLWRMND--SKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMTKR 235 (992)
Q Consensus 182 ~I~iwd~~~--~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~~~ 235 (992)
.|.+.|..+ .+. .+..+.. .....++.++|||+++++++ .+.+|.++|+.+.
T Consensus 255 ~V~VID~~~~~~~~-~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 255 GVKVVDGRKEASSL-FTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp TEEEEECSGGGCCS-SEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cEEEEeCcccCCce-eEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 588888887 332 1222221 23456899999999777665 5788999988753
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.29 E-value=0.00018 Score=86.39 Aligned_cols=279 Identities=9% Similarity=0.040 Sum_probs=158.7
Q ss_pred EEEcCCCCE----EEEEEcCCeEEEEEcCCCeEEEEeccCCC----CEEE-EEEecCCCEEEEEE------CCCeEEEEE
Q psy2685 15 LSFHPKRPW----ILSSLHNGVIQLWDYRMNTLLEKFDEHEG----PVRG-ICFHNQQPIFVSGG------DDYKIKVWN 79 (992)
Q Consensus 15 iafspdg~~----Lasg~~dg~I~IWd~~~g~~~~~~~~h~~----~V~~-l~fspdg~~Lasgs------~Dg~I~VWd 79 (992)
++++|.+.. +++++.|+.+.-+|..+|+.+.+...... .+.+ -... ++ .+++++ .+|.|..+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 445444444 88888899999999999998877643220 1111 0111 34 555554 379999999
Q ss_pred cCCCeEEEEEccCCCC-------------------------------------E-EEEEEecCCCEEEEEECC-------
Q psy2685 80 YKQRKCIFTLLGHLDY-------------------------------------I-RTTFFHHEYPWILSASDD------- 114 (992)
Q Consensus 80 ~~t~~~~~~l~~h~~~-------------------------------------V-~~i~fspd~~~L~sgs~D------- 114 (992)
..+|+.+..+...... + ..+++.++...++.++.+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999998877532211 0 134556677777777665
Q ss_pred ---------CeEEEEECCCCeeEEEEecCCC----------CeEEEEEe-cCC---CEEEEEECCCeEEEEECCCCcccc
Q psy2685 115 ---------QTIRIWNWQSRNCICVLTGHNH----------YVMCAQFH-PTD---DIVVSASLDQTIRVWDISGLRKKN 171 (992)
Q Consensus 115 ---------g~I~vwdl~t~~~i~~l~~h~~----------~V~sl~fs-pdg---~~L~sgs~Dg~I~iwd~~~~~~~~ 171 (992)
+.|..+|.++|+.+..+....+ ++. +... .+| +.++.++.+|.+.++|..+++..-
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3899999999999888764321 121 2222 466 567778999999999988754321
Q ss_pred ccCCcccCCCeEEEEEccCCcc------------eEEEEEeccC--CCeEEEEEcCCCCEEEEEe---------------
Q psy2685 172 VAPGMGADDRQIKLWRMNDSKA------------WEVDIFRGHY--NNVSCVLFHPKSEVIVSNA--------------- 222 (992)
Q Consensus 172 ~~~~~~~~d~~I~iwd~~~~~~------------~~i~~l~~h~--~~V~~v~fspdg~~L~s~s--------------- 222 (992)
........ .-..-.++.++.. .....+.+.. ..-..++++|+..++.+..
T Consensus 348 ~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 348 ANKLDDTV-NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEESSTTC-CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred cccccCCc-ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 11000000 0000000000000 0000111100 0112345555544443321
Q ss_pred ------------------------CCCeEEEEECCCCeeeeEeeccC----ccc--ccCEEEEEeCCCeEEEEECCCCeE
Q psy2685 223 ------------------------EDKSIRLWDMTKRTCLNTFRREQ----ERF--WSEVIVSNAEDKSIRLWDMTKRTC 272 (992)
Q Consensus 223 ------------------------~Dg~I~vwdl~~~~~l~~~~~~~----~~~--~s~~l~sgs~Dg~I~vwd~~t~~~ 272 (992)
.+|.+..||+.+++.+-...... ..+ .+.+++.++.|+.++.+|.++|+.
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 34788889999888776654321 111 136777888999999999999998
Q ss_pred EEEeecCCCC-EEEEEEeCCCC-EEEE
Q psy2685 273 LNTFRREQER-FWVLVAHPTLN-LFAA 297 (992)
Q Consensus 273 v~~l~~h~~~-V~~la~spdg~-~Las 297 (992)
+.+++..... ..-+.+..+|+ ++++
T Consensus 507 lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 507 LWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 8887643321 12244555665 3443
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.28 E-value=0.00036 Score=76.28 Aligned_cols=195 Identities=9% Similarity=0.000 Sum_probs=115.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC-C-eEEEEEcCCCeEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD-Y-KIKVWNYKQRKCIF 87 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D-g-~I~VWd~~t~~~~~ 87 (992)
....+++|+|++..+++...++.|..||... .....+. ......+++++++|+++++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 4678999999998666666789999999654 4444443 34568899999999966654432 2 47777877777543
Q ss_pred EEc-cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCee-EEEEec---------CCCCeEEEEEecCCCEEEEE-EC
Q psy2685 88 TLL-GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNC-ICVLTG---------HNHYVMCAQFHPTDDIVVSA-SL 155 (992)
Q Consensus 88 ~l~-~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~-i~~l~~---------h~~~V~sl~fspdg~~L~sg-s~ 155 (992)
... ........++..+++..+++-..++.|.++|..+++. +....+ .......+ +|++..+..+ +.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 322 1223345555555554444444688999999876532 221111 11234445 7777655444 45
Q ss_pred CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy2685 156 DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDM 232 (992)
Q Consensus 156 Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl 232 (992)
.+.|..+++...... +... ..... .....++++++|++.++....+.|.++|.
T Consensus 188 ~~~I~~~~~~~~g~~----------~~~~----------~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKP----------GEPE----------IFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TTEEEEEEBCTTSCB----------CCCE----------EEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred CCEEEEEEeCCCCCC----------CccE----------EEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 677888887541000 0000 11111 23445778888887666666677777754
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.27 E-value=0.00028 Score=75.45 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=109.2
Q ss_pred CeEEEEeccCCC--CEEEEEEecCCCEEEEEEC--CCeEEEEEcCCCeEEEEEccCC-CCEEEEEEecCCCEEEEEE-CC
Q psy2685 41 NTLLEKFDEHEG--PVRGICFHNQQPIFVSGGD--DYKIKVWNYKQRKCIFTLLGHL-DYIRTTFFHHEYPWILSAS-DD 114 (992)
Q Consensus 41 g~~~~~~~~h~~--~V~~l~fspdg~~Lasgs~--Dg~I~VWd~~t~~~~~~l~~h~-~~V~~i~fspd~~~L~sgs-~D 114 (992)
.+.+.++. |.. ...++.|+|++...++.+. ++.|.+.|..+++.+..+.-.. .....+++. +..+..++ .+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34566664 553 3689999998754444443 5799999999999988875322 223455655 44555444 57
Q ss_pred CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 115 QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 115 g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
+.+.++|..+++.+.++...... ...+++|+..++++..+++|.++|..+.+...
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~----------------------- 140 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIK----------------------- 140 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEE-----------------------
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEE-----------------------
Confidence 89999999999999888633111 23355677767776678888888887643211
Q ss_pred EEEEEecc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 195 EVDIFRGH---YNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 195 ~i~~l~~h---~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
.+. ...+ -..+..+.|. +|.+.+....++.|.+.|..+++.+..+.
T Consensus 141 ~I~-Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 141 KHN-VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEE-CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred EEE-ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 011 1111 1235677777 66555555456788888877776655543
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.26 E-value=0.00016 Score=76.70 Aligned_cols=206 Identities=9% Similarity=0.040 Sum_probs=127.0
Q ss_pred EEEEeccCCCC--EEEEEEecCCCEEEEEECCC--eEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEE-CCCeE
Q psy2685 43 LLEKFDEHEGP--VRGICFHNQQPIFVSGGDDY--KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS-DDQTI 117 (992)
Q Consensus 43 ~~~~~~~h~~~--V~~l~fspdg~~Lasgs~Dg--~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs-~Dg~I 117 (992)
.+.++ .|... ..++.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-.. ........+++..|...+ .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 56666 45544 5899999 676667777766 99999999999988875433 333322233455555555 58899
Q ss_pred EEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 118 ~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
.+||.++.+.+.++...... ..+.+++..|+.+..++.|.++|..+.+... +|.+-
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~----------~I~V~----------- 165 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVR----------TITVT----------- 165 (262)
T ss_dssp EEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEE----------EEECE-----------
T ss_pred EEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEE----------EEEec-----------
Confidence 99999999999988753321 2333567666666667788888887643211 11110
Q ss_pred EEeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEEEE-
Q psy2685 198 IFRGHY-NNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCLNT- 275 (992)
Q Consensus 198 ~l~~h~-~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v~~- 275 (992)
..+.. ..++.+.|. +|.+.+..-.+..|.+.|..+|+.+..+.... ...-..
T Consensus 166 -~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~------------------------L~~~~~~ 219 (262)
T 3nol_A 166 -AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG------------------------ILAEAGP 219 (262)
T ss_dssp -ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT------------------------GGGGSCS
T ss_pred -cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc------------------------Ccccccc
Confidence 01111 334556776 67655555567888888888888766554321 100000
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEECC
Q psy2685 276 FRREQERFWVLVAHPTLNLFAAGHDA 301 (992)
Q Consensus 276 l~~h~~~V~~la~spdg~~Lasgsdd 301 (992)
.....+..+.++++|+++.|.+.+..
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccCcCCceEEEEEcCCCCEEEEECCC
Confidence 01123456889999988766655543
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.25 E-value=0.00046 Score=82.73 Aligned_cols=276 Identities=9% Similarity=0.041 Sum_probs=160.6
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCCC----CEE-E-EEEec--CCC-EEEEEEC------CCeEEEEEcCCCeE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEG----PVR-G-ICFHN--QQP-IFVSGGD------DYKIKVWNYKQRKC 85 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~----~V~-~-l~fsp--dg~-~Lasgs~------Dg~I~VWd~~t~~~ 85 (992)
+..+++++.++.|.-+|..+|+.+.++..... .+. . +.... +|+ .+++++. +|.|.-+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888899999999999999887654320 111 0 11111 233 5666543 78999999999998
Q ss_pred EEEEccCCCCE-----------------------------------------EEEEEecCCCEEEEEEC-----------
Q psy2685 86 IFTLLGHLDYI-----------------------------------------RTTFFHHEYPWILSASD----------- 113 (992)
Q Consensus 86 ~~~l~~h~~~V-----------------------------------------~~i~fspd~~~L~sgs~----------- 113 (992)
+.........+ ..+++.|+...++.++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654211100 12455666677777663
Q ss_pred ---------C----CeEEEEECCCCeeEEEEec--CC--------CCeEEEEEe-cCCC---EEEEEECCCeEEEEECCC
Q psy2685 114 ---------D----QTIRIWNWQSRNCICVLTG--HN--------HYVMCAQFH-PTDD---IVVSASLDQTIRVWDISG 166 (992)
Q Consensus 114 ---------D----g~I~vwdl~t~~~i~~l~~--h~--------~~V~sl~fs-pdg~---~L~sgs~Dg~I~iwd~~~ 166 (992)
| +.|..+|.++|+.+..+.. |. .++. +... .+|+ .++.++.+|.++++|..+
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 6899999999999988753 21 1221 2222 4563 788899999999999887
Q ss_pred CccccccCCcccCCCeEEEEEccCCcc------------------eEEEEEeccCC--CeEEEEEcCCCCEEEEEe----
Q psy2685 167 LRKKNVAPGMGADDRQIKLWRMNDSKA------------------WEVDIFRGHYN--NVSCVLFHPKSEVIVSNA---- 222 (992)
Q Consensus 167 ~~~~~~~~~~~~~d~~I~iwd~~~~~~------------------~~i~~l~~h~~--~V~~v~fspdg~~L~s~s---- 222 (992)
++..-........ .-..-.++..... .......+..+ .-..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 356 GKLQNAFPFVDNI-TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp CCEEEEEESSSCC-CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCEecccccccCc-cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 5532111100000 0000001000000 00011111100 011345666544444322
Q ss_pred -----------------------------CCCeEEEEECCCCeeeeEeeccCccc------ccCEEEEEeCCCeEEEEEC
Q psy2685 223 -----------------------------EDKSIRLWDMTKRTCLNTFRREQERF------WSEVIVSNAEDKSIRLWDM 267 (992)
Q Consensus 223 -----------------------------~Dg~I~vwdl~~~~~l~~~~~~~~~~------~s~~l~sgs~Dg~I~vwd~ 267 (992)
.+|.+..||+.+|+.+-+........ .+.+++.++.|+.++.||.
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 36889999999998876655432211 1377888999999999999
Q ss_pred CCCeEEEEeecCCCCE-EEEEEeCCCC-EEEEE
Q psy2685 268 TKRTCLNTFRREQERF-WVLVAHPTLN-LFAAG 298 (992)
Q Consensus 268 ~t~~~v~~l~~h~~~V-~~la~spdg~-~Lasg 298 (992)
++|+.+.+++...... .-+.+..+|+ ++++.
T Consensus 515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 515 KSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 9999998887543321 2256667776 44443
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00032 Score=74.53 Aligned_cols=209 Identities=10% Similarity=0.108 Sum_probs=136.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCeEEEEecc-CCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 4 KFETKSARVKGLSFHPKRPWIL-SSLHNGVIQLWDYRMNTLLEKFDE-HEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 4 ~l~~H~~~V~~iafspdg~~La-sg~~dg~I~IWd~~~g~~~~~~~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
.+.+-.+.+..++|+|++..|+ +...++.|...|.. ++.+..+.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445567899999999876555 57778899999977 888887742 22568899999988766665567889999876
Q ss_pred CCeE---EEEEc------cCCCCEEEEEEecCCCEEEEEECCCeEEEEECC---CCeeEEEEe-------cCCCCeEEEE
Q psy2685 82 QRKC---IFTLL------GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ---SRNCICVLT-------GHNHYVMCAQ 142 (992)
Q Consensus 82 t~~~---~~~l~------~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~---t~~~i~~l~-------~h~~~V~sl~ 142 (992)
.... ..... ........++|.|.+..|+++.......+|.++ ....+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 123446899999999888877776565666654 111222221 1334578999
Q ss_pred EecCCC-EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEE
Q psy2685 143 FHPTDD-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN 221 (992)
Q Consensus 143 fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~ 221 (992)
++|... +++.+.....+..+|.++ ..+..+.+..+... +.........++|.|+|++.++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g--------------~~~~~~~L~~g~~~----l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVG--------------EVIGEMSLTKGSRG----LSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTC--------------CEEEEEECSTTGGG----CSSCCCSEEEEEECTTCCEEEE-
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCC--------------CEEEEEEcCCccCC----cccccCCCCeeEECCCCCEEEE-
Confidence 999764 556666677888888775 34445554432110 0001124578999999986655
Q ss_pred eCCCeEEEEEC
Q psy2685 222 AEDKSIRLWDM 232 (992)
Q Consensus 222 s~Dg~I~vwdl 232 (992)
|+.+.+.++.-
T Consensus 241 sE~n~~y~f~~ 251 (255)
T 3qqz_A 241 SEPNRFYRFTP 251 (255)
T ss_dssp ETTTEEEEEEC
T ss_pred cCCceEEEEEe
Confidence 77777766643
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=1.8e-05 Score=96.62 Aligned_cols=271 Identities=10% Similarity=0.043 Sum_probs=155.7
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------eEEEEEcCCCeEE--EEec-cCCCCEEEEEEecCCCEEEEEEC-CCeEEE
Q psy2685 14 GLSFHP-KRPWILSSLHNG-----------VIQLWDYRMNTLL--EKFD-EHEGPVRGICFHNQQPIFVSGGD-DYKIKV 77 (992)
Q Consensus 14 ~iafsp-dg~~Lasg~~dg-----------~I~IWd~~~g~~~--~~~~-~h~~~V~~l~fspdg~~Lasgs~-Dg~I~V 77 (992)
+.++.| +++.++.|+.+. .+.+||..+++.. ..+. .+.....++++.+++..+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 5889998877532 2232 23334456788899999999884 568999
Q ss_pred EEcCCCeEEEEEccCCC-CEEEEEEecCCCEEEEEE-CC-----CeEEEEECCCCeeEEEEecCC-CCe----EEEEEec
Q psy2685 78 WNYKQRKCIFTLLGHLD-YIRTTFFHHEYPWILSAS-DD-----QTIRIWNWQSRNCICVLTGHN-HYV----MCAQFHP 145 (992)
Q Consensus 78 Wd~~t~~~~~~l~~h~~-~V~~i~fspd~~~L~sgs-~D-----g~I~vwdl~t~~~i~~l~~h~-~~V----~sl~fsp 145 (992)
||..+++....-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+++-.. +.... .+. ....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceeec
Confidence 99988765432211111 123456667899999988 44 568999998776332 21000 000 0012234
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc-------CCCeEEEEEcC-CCCE
Q psy2685 146 TDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH-------YNNVSCVLFHP-KSEV 217 (992)
Q Consensus 146 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h-------~~~V~~v~fsp-dg~~ 217 (992)
++..++.|+.+|.+...... ..+..||..+...+........ ...-.++.|.. ++++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~---------------~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i 413 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPS---------------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI 413 (656)
T ss_dssp TCSCCEEECGGGCEEECCSS---------------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred CCceEEEECCCCcEEEecCc---------------cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE
Confidence 55666777777665432211 5666677666543221111111 11234455543 6778
Q ss_pred EEEEeCCC-----------eEEEEECCCCeeeeEe--eccCc------cc--ccCEEEEEeCC-----------CeEEEE
Q psy2685 218 IVSNAEDK-----------SIRLWDMTKRTCLNTF--RREQE------RF--WSEVIVSNAED-----------KSIRLW 265 (992)
Q Consensus 218 L~s~s~Dg-----------~I~vwdl~~~~~l~~~--~~~~~------~~--~s~~l~sgs~D-----------g~I~vw 265 (992)
++.|+.++ .+.+||..+..-.... ..+.. .. .+.+++.|+.+ ..+.+|
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence 88887543 6778887765433222 11111 11 23677777654 468899
Q ss_pred ECCCCeEEE--EeecCCCCEEEEEEeCCCCEEEEEEC
Q psy2685 266 DMTKRTCLN--TFRREQERFWVLVAHPTLNLFAAGHD 300 (992)
Q Consensus 266 d~~t~~~v~--~l~~h~~~V~~la~spdg~~Lasgsd 300 (992)
|..+.+-.. .+........+..+.|+|++++.|+.
T Consensus 494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 988765332 12222223345567799999999874
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.20 E-value=0.0012 Score=79.24 Aligned_cols=215 Identities=9% Similarity=-0.003 Sum_probs=121.1
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCC---------EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEcc
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGP---------VRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLG 91 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~---------V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~ 91 (992)
+..+++++.++.|.-+|..+|+.+.++...... -.+++. .+..++.++.|+.+.-+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 445666666455999999999998887643221 022233 245788888999999999999998877653
Q ss_pred CCC----CEE-EEEEec---CCC-EEEEEEC------CCeEEEEECCCCeeEEEEecCCCCe------------------
Q psy2685 92 HLD----YIR-TTFFHH---EYP-WILSASD------DQTIRIWNWQSRNCICVLTGHNHYV------------------ 138 (992)
Q Consensus 92 h~~----~V~-~i~fsp---d~~-~L~sgs~------Dg~I~vwdl~t~~~i~~l~~h~~~V------------------ 138 (992)
... .+. .-.... +++ .+++++. ++.|..+|.++|+.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 220 111 111111 223 5666543 7899999999999887664321100
Q ss_pred -----------------------EEEEEecCCCEEEEEECCCeEEEEECCCCccccccCC------cccCCCeEEEEEcc
Q psy2685 139 -----------------------MCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPG------MGADDRQIKLWRMN 189 (992)
Q Consensus 139 -----------------------~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~------~~~~d~~I~iwd~~ 189 (992)
..+++.|+...++.++.+... |+... . ..++ -....+.|.-+|..
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~--~~~~~--r--~~~gg~~~~~d~~~~~~v~AlD~~ 299 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGP--WNTWA--R--TAKGGNPHDYDSLYTSGQVGVDPS 299 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSS--SCGGG--G--SCTTSCSTTCCCTTCSEEEEECTT
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCc--ccCcc--c--ccCCCcccccCCcccceEEEEeCC
Confidence 123455566666666543211 11100 0 0000 00001456666665
Q ss_pred CCcceEEEEEeccC--------CCeEEEEEc-CCC---CEEEEEeCCCeEEEEECCCCeeeeEeecc
Q psy2685 190 DSKAWEVDIFRGHY--------NNVSCVLFH-PKS---EVIVSNAEDKSIRLWDMTKRTCLNTFRRE 244 (992)
Q Consensus 190 ~~~~~~i~~l~~h~--------~~V~~v~fs-pdg---~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~ 244 (992)
+++..=......|. .++. +... .+| ..++.++.+|.+.++|..+|+.+..+...
T Consensus 300 TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 300 SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 55531111122221 2222 2222 466 37888999999999999999988766543
No 261
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.18 E-value=0.051 Score=70.04 Aligned_cols=205 Identities=10% Similarity=0.096 Sum_probs=112.5
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEe-ccCCCCEEEEEEecC------CCEEEEEEC-CCeEEEEEcCCC
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKF-DEHEGPVRGICFHNQ------QPIFVSGGD-DYKIKVWNYKQR 83 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~-~~h~~~V~~l~fspd------g~~Lasgs~-Dg~I~VWd~~t~ 83 (992)
|...+.+ +++++.++ ++.+.++.+.++++...- ..-...|.|+++.|. ++++++|.. |++++|+++.+.
T Consensus 516 I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 516 ISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp CCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 4444433 24566664 678888877766433211 123568999999863 368999996 999999999887
Q ss_pred eEEEEEcc-CCCCEEEEEEe--cCCCEEEEEECCCeEEEEECC--CCeeEEE---EecCCCCeEEEEEecCC--------
Q psy2685 84 KCIFTLLG-HLDYIRTTFFH--HEYPWILSASDDQTIRIWNWQ--SRNCICV---LTGHNHYVMCAQFHPTD-------- 147 (992)
Q Consensus 84 ~~~~~l~~-h~~~V~~i~fs--pd~~~L~sgs~Dg~I~vwdl~--t~~~i~~---l~~h~~~V~sl~fspdg-------- 147 (992)
+.+....- .....+++.+. ....+|..|-.||.+.-+.++ ++..... ..| ..++.-..+...+
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s 671 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS 671 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC
Confidence 66644321 12344555443 234688999999998766554 4443322 222 2344333333322
Q ss_pred --CEEEEEECCCeEEEEECCCCcccccc-------CC--cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCC
Q psy2685 148 --DIVVSASLDQTIRVWDISGLRKKNVA-------PG--MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE 216 (992)
Q Consensus 148 --~~L~sgs~Dg~I~iwd~~~~~~~~~~-------~~--~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~ 216 (992)
++++..+ ++.+.+-.+......... +. ....++.+++..++....+.+..+.- ...+..++++|+.+
T Consensus 672 ~rp~liy~~-~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 672 DRPTVIYSS-NHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQ 749 (1158)
T ss_dssp SSCEEEEES-SSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGT
T ss_pred CCCEEEEEc-CCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCC
Confidence 3333222 222322222211100000 00 33445668888876655555555543 34678888998877
Q ss_pred EEEEEe
Q psy2685 217 VIVSNA 222 (992)
Q Consensus 217 ~L~s~s 222 (992)
.++.+.
T Consensus 750 ~~~v~~ 755 (1158)
T 3ei3_A 750 CFGVLS 755 (1158)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655544
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.16 E-value=0.0002 Score=75.15 Aligned_cols=200 Identities=7% Similarity=0.032 Sum_probs=126.6
Q ss_pred EEeecCCCC--EEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCeEEEEeccCCCC-EEEEEEecCCCEEEE-EECCCeEE
Q psy2685 3 TKFETKSAR--VKGLSFHPKRPWILSSLHN--GVIQLWDYRMNTLLEKFDEHEGP-VRGICFHNQQPIFVS-GGDDYKIK 76 (992)
Q Consensus 3 ~~l~~H~~~--V~~iafspdg~~Lasg~~d--g~I~IWd~~~g~~~~~~~~h~~~-V~~l~fspdg~~Las-gs~Dg~I~ 76 (992)
.++ .|... ...+.|++ +.+..+++.. +.|+.+|+.+|+.+.++...... --+++.. ++.|.. ...++.+.
T Consensus 13 ~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 13 KRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEE
Confidence 344 56543 66999987 4555555554 48999999999998887543322 1334444 444444 45689999
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCC-----CCeEEEEEecCCCEEE
Q psy2685 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHN-----HYVMCAQFHPTDDIVV 151 (992)
Q Consensus 77 VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~-----~~V~sl~fspdg~~L~ 151 (992)
++|..+.+.+.++...... ..++ +++..|+.+..++.|.++|.++.+.+.++.-.. ..+..+.|. +|...+
T Consensus 89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 9999999999988643322 3444 566666666678899999999998887776422 345566766 565555
Q ss_pred EEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q psy2685 152 SASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAE 223 (992)
Q Consensus 152 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~ 223 (992)
..-.+..|.+.|..+++ .+..+++..-...............+.++++|+++.|.+.+.
T Consensus 165 nvw~s~~I~vIDp~tG~-------------V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGK-------------VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTCB-------------EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCCC-------------EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55467788888887643 334444432110000000012235688999998776665554
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.15 E-value=0.0017 Score=72.57 Aligned_cols=198 Identities=11% Similarity=0.019 Sum_probs=124.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEE
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQRKCIF 87 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~~~~~ 87 (992)
.+..+|.+..+ ..+|+.+. ...|+..+........... ......+++|++.+..|..+. ..+.|..++...+....
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 34456666666 45565554 4558888876655444443 344578999998777666554 57889999987765444
Q ss_pred EEccCCCCEEEEEEecCCCEE-EEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CC-CeEEEEEC
Q psy2685 88 TLLGHLDYIRTTFFHHEYPWI-LSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LD-QTIRVWDI 164 (992)
Q Consensus 88 ~l~~h~~~V~~i~fspd~~~L-~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~D-g~I~iwd~ 164 (992)
...........+++.+.+..| ++-...+.|.+.+++.......+.........++++|.+..+..+. .+ +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 343333456789999865544 4555678999999875544444444456678999998665555443 33 56766666
Q ss_pred CCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q psy2685 165 SGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTKR 235 (992)
Q Consensus 165 ~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~~ 235 (992)
.+... .............++++|++..| ++-+..+.|..+|+...
T Consensus 190 dG~~~--------------------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 190 DGSGR--------------------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp TSCSC--------------------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCc--------------------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 54211 01111123346789999866555 45455678999998753
No 264
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.12 E-value=0.015 Score=69.96 Aligned_cols=372 Identities=10% Similarity=0.030 Sum_probs=191.9
Q ss_pred CEEEEEEcCCeEEEEEcCCCe-EEEEeccCCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCCCeE-EEEEccCCCCEEE
Q psy2685 22 PWILSSLHNGVIQLWDYRMNT-LLEKFDEHEGPVRGICFHNQQPIFVSGGD-DYKIKVWNYKQRKC-IFTLLGHLDYIRT 98 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~-~~~~~~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~VWd~~t~~~-~~~l~~h~~~V~~ 98 (992)
++|+-+ ....|+..|+.... ........-....+++|++.+..|+.+.. .+.|..+++..... ...+.........
T Consensus 10 ~~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 10 PLLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp CCEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred ceEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 444444 46778888876543 22222233456789999997777776654 67899998865532 2233333357899
Q ss_pred EEEecCCCEEE-EEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCccccccCC
Q psy2685 99 TFFHHEYPWIL-SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNVAPG 175 (992)
Q Consensus 99 i~fspd~~~L~-sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~ 175 (992)
+++.+.+..|+ +-...+.|.+.+++.................++++|.+..|..+.. .+.|...++.+..
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~------- 161 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------- 161 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-------
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-------
Confidence 99999665554 4456789999998755433333345556778899887665555542 3455555554321
Q ss_pred cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeeEeec---cCcc--cc
Q psy2685 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTKRTCLNTFRR---EQER--FW 249 (992)
Q Consensus 176 ~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~~~~l~~~~~---~~~~--~~ 249 (992)
........-.....+++++++..| ++-+..+.|..+|+........... +... +.
T Consensus 162 -------------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~ 222 (619)
T 3s94_A 162 -------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 222 (619)
T ss_dssp -------------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEES
T ss_pred -------------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe
Confidence 111122233457889999865544 4545567888888876433222211 1111 11
Q ss_pred c-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEE-EEeCCCC---------------EE----------EEEECCC
Q psy2685 250 S-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVL-VAHPTLN---------------LF----------AAGHDAG 302 (992)
Q Consensus 250 s-~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~l-a~spdg~---------------~L----------asgsddg 302 (992)
. .++++-...+.|...|..+++....+.........+ .+||..+ .+ .+.+..|
T Consensus 223 ~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g 302 (619)
T 3s94_A 223 EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG 302 (619)
T ss_dssp SSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTT
T ss_pred CCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCch
Confidence 2 344455567788888887776555443322222222 2222110 01 1111112
Q ss_pred EEEEEecCC-cceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeE
Q psy2685 303 MVVFKFERE-RPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTY 381 (992)
Q Consensus 303 iivw~l~~~-~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i 381 (992)
. .+..+ +.........+++.....|+..++.......+. +.-.....+..++|++.+..|.+++.. .+.+
T Consensus 303 ~---~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~-~~~~~l~~~~~ld~d~~~~~ly~sD~~-----~~~I 373 (619)
T 3s94_A 303 V---KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV-LQLEDIRHAIAIDYDPVEGYIYWTDDE-----VRAI 373 (619)
T ss_dssp C---CBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEE-CCCSCCSSEEEEEEETTTTEEEEEETT-----TTEE
T ss_pred h---eecccCcccCCCCceEEEEEcccceEEEecCCCccceeE-EeccccCccEEEEEEcCCCeEEEEeCC-----CCeE
Confidence 1 11111 111111233566667788888888765433222 221223456789999988877777643 3555
Q ss_pred EEEEeCCCccccceeccCccccceEEEEec-CCeEEEEEc-CCeEEEEEcCC
Q psy2685 382 DLYMIPKEESERKEVADGKRSTGISAVWVA-RNRFAVLDR-NHTILIKNLKN 431 (992)
Q Consensus 382 ~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~-~~~~av~~~-~g~I~i~dl~~ 431 (992)
..+....... .............+++-. .+++.+.+. .+.|.+.++..
T Consensus 374 ~r~~~~g~~~--~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 374 RRSFIDGSGS--QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp EEEETTSCSC--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEcCCCcc--EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 5555443211 111111112222333322 334444454 67787777654
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.09 E-value=5.8e-05 Score=80.04 Aligned_cols=195 Identities=8% Similarity=-0.008 Sum_probs=123.9
Q ss_pred cCCCC--EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEE--EEEEecCCCEEEEEECCCeEEEEEcCC
Q psy2685 7 TKSAR--VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVR--GICFHNQQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 7 ~H~~~--V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~--~l~fspdg~~Lasgs~Dg~I~VWd~~t 82 (992)
.|... ...+.|+. +.+..+.+.+|.|+++|.++++.+.++ -. .... ++++..+ ...++...++.+.++|..+
T Consensus 50 phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 50 PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTT
T ss_pred cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCc
Confidence 45433 46888884 556667777889999999999887776 22 2333 3555432 3344445688999999999
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCC-----CCeEEEEEecCCCEEEEEECCC
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHN-----HYVMCAQFHPTDDIVVSASLDQ 157 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~-----~~V~sl~fspdg~~L~sgs~Dg 157 (992)
.+.+.++..... -..++ +++..|+.+..++.|.++|.++.+.+.++.... ..+..+.|. +|...+....+.
T Consensus 126 l~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 126 PQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp TEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred CcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 999998864322 23344 567777777778999999999998888776422 234667777 666555554677
Q ss_pred eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe
Q psy2685 158 TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA 222 (992)
Q Consensus 158 ~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s 222 (992)
.|.+.|..+++ .+..+++..-...............+.++|+|+++.|.+.+
T Consensus 202 ~I~vIDp~TG~-------------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGT-------------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCB-------------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCc-------------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 88888887642 33444443110000000001224568899999766555444
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.08 E-value=0.0048 Score=67.72 Aligned_cols=207 Identities=10% Similarity=-0.047 Sum_probs=124.9
Q ss_pred CCCEEEEEEcCCCCEEEEEE-cCCeEEEEEcCC---CeE-EEEeccCCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCC
Q psy2685 9 SARVKGLSFHPKRPWILSSL-HNGVIQLWDYRM---NTL-LEKFDEHEGPVRGICFHNQQPIFV-SGGDDYKIKVWNYKQ 82 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~-~dg~I~IWd~~~---g~~-~~~~~~h~~~V~~l~fspdg~~La-sgs~Dg~I~VWd~~t 82 (992)
...+.+++|++++..|..+. .++.|..++... +.. ...+...-....++++++.+..|. +-..++.|.+.+...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999999776666554 468999999765 122 222322224557899997655554 445678999999875
Q ss_pred CeEEEEEccCCCCEEEEEEecCCCEEEEEECC--CeEEEEECCCCeeEEEE-ecCCCCeEEEEEecCCCEEEEEE-CCCe
Q psy2685 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDD--QTIRIWNWQSRNCICVL-TGHNHYVMCAQFHPTDDIVVSAS-LDQT 158 (992)
Q Consensus 83 ~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D--g~I~vwdl~t~~~i~~l-~~h~~~V~sl~fspdg~~L~sgs-~Dg~ 158 (992)
................+++.|.+..++.+... +.|...++.... ...+ .........++++|++..|..+. ..+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 54433333344568999999977666655543 688888876433 3333 33345678999998876665554 4567
Q ss_pred EEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy2685 159 IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCL 238 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l 238 (992)
|..+|..+... ..+............+++. .+.++++....+.|..++..+|+.+
T Consensus 188 I~~~d~dg~~~------------------------~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 188 ISSIDVNGGNR------------------------KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEETTSCSC------------------------EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEEecCCCce------------------------EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 77777764211 0111111112334566665 3556666666778888887666544
Q ss_pred eEe
Q psy2685 239 NTF 241 (992)
Q Consensus 239 ~~~ 241 (992)
..+
T Consensus 243 ~~i 245 (316)
T 1ijq_A 243 NLL 245 (316)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.06 E-value=0.0017 Score=77.82 Aligned_cols=211 Identities=8% Similarity=0.002 Sum_probs=126.0
Q ss_pred CCEEEEEEc-CCeEEEEEc-CCCeEEEEeccCCC-----------CEEEEEEecCCCE----EEEEECCCeEEEEEcCCC
Q psy2685 21 RPWILSSLH-NGVIQLWDY-RMNTLLEKFDEHEG-----------PVRGICFHNQQPI----FVSGGDDYKIKVWNYKQR 83 (992)
Q Consensus 21 g~~Lasg~~-dg~I~IWd~-~~g~~~~~~~~h~~-----------~V~~l~fspdg~~----Lasgs~Dg~I~VWd~~t~ 83 (992)
+..+++++. ++.|.-+|. .+|+.+.++..... ...+++.+|.+.. ++.++.|+.+.-+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 89999988764321 1234566554444 888889999999999999
Q ss_pred eEEEEEccCCC----CEEE-EEEecCCCEEEEEE------CCCeEEEEECCCCeeEEEEecCCCCe--------------
Q psy2685 84 KCIFTLLGHLD----YIRT-TFFHHEYPWILSAS------DDQTIRIWNWQSRNCICVLTGHNHYV-------------- 138 (992)
Q Consensus 84 ~~~~~l~~h~~----~V~~-i~fspd~~~L~sgs------~Dg~I~vwdl~t~~~i~~l~~h~~~V-------------- 138 (992)
+.+........ .+.+ -... ++ .+++++ .+|.|..+|.++|+.+..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 98877643210 1111 1111 33 455555 38999999999999988776432110
Q ss_pred ------------------------EEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 139 ------------------------MCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 139 ------------------------~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
...++.++...++.++.++.- |+-... ++-..-...|.-+|..+++..
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p--~~~~~r------~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP--WNETMR------PGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC--SCGGGS------CSCCTTSSEEEEEETTTCCEE
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc--ccCccc------CCCccccceEEEEeCCCCcee
Confidence 134566677777777766422 211000 000000134555555554421
Q ss_pred EEEEEeccC--------CCeEEEEEc-CCC---CEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 195 EVDIFRGHY--------NNVSCVLFH-PKS---EVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 195 ~i~~l~~h~--------~~V~~v~fs-pdg---~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
=......|. .++. +... .+| ..++.++.+|.+.++|..+|+.+....
T Consensus 292 W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 292 FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 111122221 1222 2222 467 577888999999999999998876654
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.05 E-value=0.0026 Score=72.09 Aligned_cols=195 Identities=11% Similarity=0.013 Sum_probs=122.0
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEc
Q psy2685 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 12 V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l~ 90 (992)
-+|.+..+ ..+|+.+. ...|+.++...+....... ......+++|++.+..|..+. ..+.|..++...+.....+.
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 34555555 44555554 4568888877665444443 345678999998766666554 57899999987765444444
Q ss_pred cCCCCEEEEEEecCCCEE-EEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC-C-CeEEEEECCCC
Q psy2685 91 GHLDYIRTTFFHHEYPWI-LSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL-D-QTIRVWDISGL 167 (992)
Q Consensus 91 ~h~~~V~~i~fspd~~~L-~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-D-g~I~iwd~~~~ 167 (992)
........+++.+.+..| ++-...+.|.+.+++.......+.........++++|.+..|..+.. . +.|..+++.+.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 333456778998765544 45455678999888755444444444567789999987765555443 3 55666665542
Q ss_pred ccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q psy2685 168 RKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTKR 235 (992)
Q Consensus 168 ~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~~ 235 (992)
. ..............++++|++..| ++-+..+.|..+|+...
T Consensus 236 ~--------------------------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 236 G--------------------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp S--------------------------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred C--------------------------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 1 111112223456789999865544 55556778999998653
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.05 E-value=0.0025 Score=76.24 Aligned_cols=210 Identities=8% Similarity=-0.001 Sum_probs=119.9
Q ss_pred CCEEEEEEc-CCeEEEEEc-CCCeEEEEeccCCCC-----------EEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q psy2685 21 RPWILSSLH-NGVIQLWDY-RMNTLLEKFDEHEGP-----------VRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIF 87 (992)
Q Consensus 21 g~~Lasg~~-dg~I~IWd~-~~g~~~~~~~~h~~~-----------V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~ 87 (992)
+..+++++. ++.|.-+|. .+|+.+.++...... -..++. .+..+++++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 899999999 899998887543210 012233 25578888899999999999999887
Q ss_pred EEccCC----CCEEE-EEEecCCCEEEEEEC------CCeEEEEECCCCeeEEEEecCCCC-------------------
Q psy2685 88 TLLGHL----DYIRT-TFFHHEYPWILSASD------DQTIRIWNWQSRNCICVLTGHNHY------------------- 137 (992)
Q Consensus 88 ~l~~h~----~~V~~-i~fspd~~~L~sgs~------Dg~I~vwdl~t~~~i~~l~~h~~~------------------- 137 (992)
...... ..+.+ .... + ..+++++. ++.|..+|.++|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 764221 01111 0111 3 35566654 799999999999998877642211
Q ss_pred -------------------eEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEE
Q psy2685 138 -------------------VMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDI 198 (992)
Q Consensus 138 -------------------V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~ 198 (992)
-..+++.++...+..++.+... |+-... +.-..-.+.+..+|..+++..=...
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~--~~~~~~------~gd~~y~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAP--WNETMR------PGDNKWTMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC--SCGGGS------CSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCcc--ccCCcc------CCCceeEEEEEEEecCCCcEEEEec
Confidence 0124556665666665543211 110000 0000000234444544443211111
Q ss_pred Eecc--------CCCeEEEEEcCCCC---EEEEEeCCCeEEEEECCCCeeeeEeec
Q psy2685 199 FRGH--------YNNVSCVLFHPKSE---VIVSNAEDKSIRLWDMTKRTCLNTFRR 243 (992)
Q Consensus 199 l~~h--------~~~V~~v~fspdg~---~L~s~s~Dg~I~vwdl~~~~~l~~~~~ 243 (992)
...| ..++. +...++|+ .++.++.+|.+.++|..+|+.+.....
T Consensus 290 ~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 290 KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 1111 12222 22234673 677888999999999999988776553
No 270
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.05 E-value=0.054 Score=65.29 Aligned_cols=332 Identities=8% Similarity=0.036 Sum_probs=182.3
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeEEEEecc-CCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEccCCCCEEE
Q psy2685 21 RPWILSSLHNGVIQLWDYRMNTLLEKFDE-HEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQRKCIFTLLGHLDYIRT 98 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~g~~~~~~~~-h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l~~h~~~V~~ 98 (992)
.++|+.+ ..+.|+..++.+......+.. .-..+.+++|++.+..|..+. .++.|..+++........+.........
T Consensus 6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 3456655 577899999886654333321 234688999999777666554 5789999998765443334333345678
Q ss_pred EEEecCCCEEE-EEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCccccccCC
Q psy2685 99 TFFHHEYPWIL-SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNVAPG 175 (992)
Q Consensus 99 i~fspd~~~L~-sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~ 175 (992)
+++.+.+..|. +-...+.|.+.+++.......+.........++++|....|..+.. .+.|...++.+..
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~------- 157 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE------- 157 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-------
Confidence 99987665554 4455688999998754433333344556789999986655555542 3455555554421
Q ss_pred cccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeeEeeccCc-c----cc
Q psy2685 176 MGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAEDKSIRLWDMTKRTCLNTFRREQE-R----FW 249 (992)
Q Consensus 176 ~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~-s~s~Dg~I~vwdl~~~~~l~~~~~~~~-~----~~ 249 (992)
... +...-.....+++++++..|. +-+..+.|..+|+..... ..+..... + +.
T Consensus 158 -----------------~~~---l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~ 216 (628)
T 4a0p_A 158 -----------------RTT---LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY 216 (628)
T ss_dssp -----------------CEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE
T ss_pred -----------------eEE---EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE
Confidence 111 112345578899999765554 445678899999876433 22221111 1 11
Q ss_pred c-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEE-EEeCCCC--------------EEEEEECCCEEE------EE
Q psy2685 250 S-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVL-VAHPTLN--------------LFAAGHDAGMVV------FK 307 (992)
Q Consensus 250 s-~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~l-a~spdg~--------------~Lasgsddgiiv------w~ 307 (992)
. .++++-...+.|...|..+++....+.........+ .+++..+ .+......+-.. |.
T Consensus 217 ~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~ 296 (628)
T 4a0p_A 217 QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYS 296 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCE
T ss_pred CCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcE
Confidence 2 344455557788888877766544443322222222 2332100 111111111110 11
Q ss_pred ecCCcceEEeeccEEEEEeCCeEEEEEeeCCCceEEEEeecCCCccceeEEEccCCCEEEEEecCCccccCCeEEEEEeC
Q psy2685 308 FERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 387 (992)
Q Consensus 308 l~~~~~~~~~~~~~v~~~~~~~i~i~dl~~~~~~~v~~l~~~~~~~I~~lafspdg~~lav~~~~~~~~~~g~i~i~~l~ 387 (992)
+.............+++.....|+...+...... ...+.-.....+..+.|++.+..|..+... .+.+..+...
T Consensus 297 l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~-~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~-----~~~I~r~~~~ 370 (628)
T 4a0p_A 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSP-DIILPIHSLRNVRAIDYDPLDKQLYWIDSR-----QNMIRKAQED 370 (628)
T ss_dssp ECTTSSCEECCSSEEEEEETTEEEEECCCTTCCC-CEECCCTTCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETT
T ss_pred ecccCCcCccccceeeeeccceEEEEecccccCc-eEEEEehhcCCceEEEEecCCCeEEEEecC-----cceEEEEEcC
Confidence 2111111122334566677777877766533211 112221223457789999988888877643 3555555443
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.02 E-value=0.0013 Score=69.04 Aligned_cols=171 Identities=10% Similarity=0.095 Sum_probs=108.7
Q ss_pred eEEEEeccCCC--CEEEEEEecCCCEEEEEECC--CeEEEEEcCCCeEEEEEccCCCC-EEEEEEecCCCEEE-EEECCC
Q psy2685 42 TLLEKFDEHEG--PVRGICFHNQQPIFVSGGDD--YKIKVWNYKQRKCIFTLLGHLDY-IRTTFFHHEYPWIL-SASDDQ 115 (992)
Q Consensus 42 ~~~~~~~~h~~--~V~~l~fspdg~~Lasgs~D--g~I~VWd~~t~~~~~~l~~h~~~-V~~i~fspd~~~L~-sgs~Dg 115 (992)
+.+.++ .|+. -..++.|++ +.++.+.+.+ +.|+++|+.+++.+....-.... -..++.. +..|. ..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 356666 4653 477999997 5556666664 49999999999998887543322 2334443 34444 444689
Q ss_pred eEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceE
Q psy2685 116 TIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWE 195 (992)
Q Consensus 116 ~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~ 195 (992)
.+.+||.++.+.+.++...... ..++ +++..|+.+..++.|.++|..+.+.. ++|.+-+
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~----------~~I~V~~-------- 144 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQV----------GSIKVTA-------- 144 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEE----------EEEECEE--------
T ss_pred EEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEE----------EEEEEcc--------
Confidence 9999999999999998854322 3343 46666666667888999988764321 1111100
Q ss_pred EEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 196 VDIFRG-HYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 196 i~~l~~-h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
.+ .-..++.+.|. +|.+.+..-.+..|.+.|..+|+.+..+.
T Consensus 145 ----~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 145 ----GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp ----TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred ----CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 00 01234556665 66655555457788888888888766654
No 272
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.01 E-value=0.00019 Score=76.16 Aligned_cols=171 Identities=8% Similarity=0.046 Sum_probs=109.5
Q ss_pred eEEEEeccCCC--CEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCE--EEEEEecCCCEEEEEECCCeE
Q psy2685 42 TLLEKFDEHEG--PVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYI--RTTFFHHEYPWILSASDDQTI 117 (992)
Q Consensus 42 ~~~~~~~~h~~--~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V--~~i~fspd~~~L~sgs~Dg~I 117 (992)
+.+.++ .|.. -..++.|+. +.+..+.+.+|.|+++|+++++.+..+ -. ... ..+++..+ ...+..-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEE
Confidence 455666 3543 358999984 567777788899999999999888776 22 233 33555432 344444568999
Q ss_pred EEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEE
Q psy2685 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVD 197 (992)
Q Consensus 118 ~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~ 197 (992)
.+||.++.+.+.++..... -..++ +++..|+.+..++.|.++|..+.+.. ++|.+-+ .
T Consensus 119 ~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~----------~~I~V~~---~------ 176 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV----------GAVQVKL---R------ 176 (268)
T ss_dssp EEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEE----------EEEECEE---T------
T ss_pred EEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE----------EEEEeCC---C------
Confidence 9999999999998875322 23334 56777777777888999988765322 1111100 0
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 198 IFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 198 ~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
...-..++.+.|. +|.+.+..-.+..|.+.|..+|+.+..+.
T Consensus 177 --g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 177 --GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp --TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred --CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 0011234667776 67655555467788888888887766554
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.01 E-value=0.0092 Score=65.42 Aligned_cols=185 Identities=6% Similarity=-0.032 Sum_probs=115.8
Q ss_pred CEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC----CeEEEEEccCCCCE
Q psy2685 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQ----RKCIFTLLGHLDYI 96 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t----~~~~~~l~~h~~~V 96 (992)
++|+.+. ...|+..|+.+++....+. ......+++|++.+..|..+. .++.|..++... ......+.......
T Consensus 2 ~~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 2 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp CEEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred CEEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3455554 4568999988776555544 345678999999776666554 468999999875 22222233233456
Q ss_pred EEEEEecCCCEE-EEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECC--CeEEEEECCCCcccccc
Q psy2685 97 RTTFFHHEYPWI-LSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD--QTIRVWDISGLRKKNVA 173 (992)
Q Consensus 97 ~~i~fspd~~~L-~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D--g~I~iwd~~~~~~~~~~ 173 (992)
..+++.+.+..| ++-...+.|.+.+.........+.........++++|.+..++.+... +.|...++.+..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----- 154 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----- 154 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-----
Confidence 789998755544 454567899999987554433344345677899999876655555432 566666665421
Q ss_pred CCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCC
Q psy2685 174 PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIV-SNAEDKSIRLWDMTK 234 (992)
Q Consensus 174 ~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~-s~s~Dg~I~vwdl~~ 234 (992)
........-.....++++|++..|. +-+..+.|..+|+..
T Consensus 155 ---------------------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 155 ---------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ---------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ---------------------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 1111112234577899998766554 445667999999875
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.95 E-value=0.0085 Score=68.15 Aligned_cols=210 Identities=9% Similarity=-0.047 Sum_probs=129.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCC----eEEEEeccCCCCEEEEEEecCCCEEE-EEECCCeEEEEEc
Q psy2685 7 TKSARVKGLSFHPKRPWILSSL-HNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHNQQPIFV-SGGDDYKIKVWNY 80 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~-~dg~I~IWd~~~g----~~~~~~~~h~~~V~~l~fspdg~~La-sgs~Dg~I~VWd~ 80 (992)
.....+.+++|++.+..|..+. .++.|..++.... .....+........++++++.+..|+ +-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 3445788999999766666554 4688988987642 22333333445678999998555454 4455789999998
Q ss_pred CCCeEEEEEccCCCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCC
Q psy2685 81 KQRKCIFTLLGHLDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQ 157 (992)
Q Consensus 81 ~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg 157 (992)
........+.......+.+++.|.+..|+.... .+.|...++..................++++|++..|..+. ..+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 766554444444556899999997766665543 37899999865444333444446788999998877666654 456
Q ss_pred eEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q psy2685 158 TIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTC 237 (992)
Q Consensus 158 ~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~ 237 (992)
.|..+|+.+... ..+....+.......+++. .+.++++....+.|..+|..+|+.
T Consensus 269 ~I~~~d~dG~~~------------------------~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 269 SISSIDVNGGNR------------------------KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEEETTSCCC------------------------EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEEeCCCCcc------------------------EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 677777654221 1111111122334456653 344556666667777777666554
Q ss_pred eeEe
Q psy2685 238 LNTF 241 (992)
Q Consensus 238 l~~~ 241 (992)
+..+
T Consensus 324 ~~~i 327 (400)
T 3p5b_L 324 VNLL 327 (400)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4433
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.93 E-value=0.0054 Score=69.44 Aligned_cols=206 Identities=11% Similarity=0.031 Sum_probs=128.2
Q ss_pred CCCEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCCeEE
Q psy2685 9 SARVKGLSFHPKRPWILSS-LHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG-GDDYKIKVWNYKQRKCI 86 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg-~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~VWd~~t~~~~ 86 (992)
...+.+++|++.+..|..+ ...+.|..++...+.....+........++++++.+..|+.. ...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457889999866666554 457889999977665444443333455789999866655544 45678888887655433
Q ss_pred EEEccCCCCEEEEEEecCCCEEEEEEC-C-CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEE
Q psy2685 87 FTLLGHLDYIRTTFFHHEYPWILSASD-D-QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWD 163 (992)
Q Consensus 87 ~~l~~h~~~V~~i~fspd~~~L~sgs~-D-g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd 163 (992)
..+.........+++.|.+..|+.+.. . +.|..+++..................++|+|++..|..+. ..+.|..+|
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 334444466899999987766655543 3 6888888865443333333445678999998766555544 456677777
Q ss_pred CCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 164 ISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 164 ~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
+.+... ...+.........+++. .+.++++....+.|..++..+|+....+
T Consensus 275 ~dG~~~--------------------------~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 275 LDGSHR--------------------------KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp TTSCSC--------------------------EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCee--------------------------EEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 654211 11112222345566663 4556666666778888876665544443
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.93 E-value=0.0058 Score=68.17 Aligned_cols=205 Identities=11% Similarity=0.036 Sum_probs=126.1
Q ss_pred CCEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEEE
Q psy2685 10 ARVKGLSFHPKRPWILSSL-HNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS-GGDDYKIKVWNYKQRKCIF 87 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~-~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Las-gs~Dg~I~VWd~~t~~~~~ 87 (992)
..+.+++|++.+..|..+. ..+.|..++...+.....+........++++++.+..|+. -...+.|.+.+........
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4578999998766666554 5788999997766544433333345578999986655544 4456799999987554333
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEE-CC-CeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEEC
Q psy2685 88 TLLGHLDYIRTTFFHHEYPWILSAS-DD-QTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDI 164 (992)
Q Consensus 88 ~l~~h~~~V~~i~fspd~~~L~sgs-~D-g~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd~ 164 (992)
.+.........+++.|.+..++... .. +.|..++++.................++++|++..|..+. ..+.|..+|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 3444446679999999666555544 44 7888888764333222223345578999998776555554 4566777776
Q ss_pred CCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy2685 165 SGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTF 241 (992)
Q Consensus 165 ~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~ 241 (992)
.+... .............+++. .+.+.++-...+.|..++..+|+....+
T Consensus 233 dG~~~--------------------------~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 233 DGSHR--------------------------KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TSCSC--------------------------EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCce--------------------------EEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 54211 11111222344566663 4555666666777877776555544433
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0023 Score=73.66 Aligned_cols=153 Identities=13% Similarity=0.154 Sum_probs=100.7
Q ss_pred CEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEEC-CC----eEEEEEcCCCe
Q psy2685 11 RVKGLSFHP-KRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD-DY----KIKVWNYKQRK 84 (992)
Q Consensus 11 ~V~~iafsp-dg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~-Dg----~I~VWd~~t~~ 84 (992)
....++|+| ++..|.++...+.|+.+|...+...... .......+++|+++|+.|+++.. ++ .+.+.+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 567899998 4666777766688999998776654443 34556889999999996666654 22 3333443 221
Q ss_pred EE--EEEccCCCCEEEEEEec-CCCEEEEEECCCeEEEEECCCCeeEEEEe-cCCCCeEEEEEecCCCEE-EEEECCCeE
Q psy2685 85 CI--FTLLGHLDYIRTTFFHH-EYPWILSASDDQTIRIWNWQSRNCICVLT-GHNHYVMCAQFHPTDDIV-VSASLDQTI 159 (992)
Q Consensus 85 ~~--~~l~~h~~~V~~i~fsp-d~~~L~sgs~Dg~I~vwdl~t~~~i~~l~-~h~~~V~sl~fspdg~~L-~sgs~Dg~I 159 (992)
.. ..+.. ......++++| ++.++++-..++.|..++..++....... +.......++|+|+++++ ++-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 12221 23356788999 66666666677899999998766422222 122457889999999954 444567888
Q ss_pred EEEECCC
Q psy2685 160 RVWDISG 166 (992)
Q Consensus 160 ~iwd~~~ 166 (992)
..++..+
T Consensus 295 ~~~~~d~ 301 (430)
T 3tc9_A 295 LRSDYDW 301 (430)
T ss_dssp EEEEEET
T ss_pred EEEeCCc
Confidence 8887654
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.89 E-value=0.0003 Score=87.23 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=89.3
Q ss_pred CEEEEEEc-CCCCEEEEEEc-CC----eEEEEEcCCC-eEEE-EeccCCCCEEEEEEecCCCEEEEEECC-----CeEEE
Q psy2685 11 RVKGLSFH-PKRPWILSSLH-NG----VIQLWDYRMN-TLLE-KFDEHEGPVRGICFHNQQPIFVSGGDD-----YKIKV 77 (992)
Q Consensus 11 ~V~~iafs-pdg~~Lasg~~-dg----~I~IWd~~~g-~~~~-~~~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~V 77 (992)
.+...+|| |||++||.+.. +| .|+++|+.+| +.+. .+. ....+++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99999986654 23 4999999988 6321 111 112467899999988776654 36888
Q ss_pred EEcCCCeE--EEEEc-cCCCCEEEEEEecCCCEEEEEEC---CCeEEEEECCCC--ee--EEEEecCCCCeEEEEEecCC
Q psy2685 78 WNYKQRKC--IFTLL-GHLDYIRTTFFHHEYPWILSASD---DQTIRIWNWQSR--NC--ICVLTGHNHYVMCAQFHPTD 147 (992)
Q Consensus 78 Wd~~t~~~--~~~l~-~h~~~V~~i~fspd~~~L~sgs~---Dg~I~vwdl~t~--~~--i~~l~~h~~~V~sl~fspdg 147 (992)
+++.++.. ...+. ........+.|+|||++|+..+. ...|.++|+.++ .. ............++.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 88877531 22222 23345678899999998887653 456888998765 22 222233344556666654 4
Q ss_pred CEEEEEE
Q psy2685 148 DIVVSAS 154 (992)
Q Consensus 148 ~~L~sgs 154 (992)
..|+..+
T Consensus 331 ~~l~~~t 337 (751)
T 2xe4_A 331 SHLVILT 337 (751)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 4444333
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.86 E-value=0.03 Score=63.55 Aligned_cols=237 Identities=6% Similarity=-0.039 Sum_probs=141.5
Q ss_pred CEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCC----eEEEEEccCCCCE
Q psy2685 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQR----KCIFTLLGHLDYI 96 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~----~~~~~l~~h~~~V 96 (992)
.+|+.+. ...|+..++.......... ....+.+++|++.+..|..+. .++.|..+++... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 4555554 5789999987665444443 456788999999777666655 4678999988652 2233333345567
Q ss_pred EEEEEecCCC-EEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCcccccc
Q psy2685 97 RTTFFHHEYP-WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNVA 173 (992)
Q Consensus 97 ~~i~fspd~~-~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~ 173 (992)
..+++.+.+. +.++-...+.|.+.+++.......+.........++++|.+..|+.+.. .+.|...++.+...
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---- 237 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---- 237 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC----
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc----
Confidence 8999998544 4455556789999998766554445545566889999997666655542 25666666654211
Q ss_pred CCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeeEeeccC---cc--
Q psy2685 174 PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN-AEDKSIRLWDMTKRTCLNTFRREQ---ER-- 247 (992)
Q Consensus 174 ~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~vwdl~~~~~l~~~~~~~---~~-- 247 (992)
.......-.....++++|++..|..+ +..+.|..+|+............. .+
T Consensus 238 ----------------------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 238 ----------------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS 295 (400)
T ss_dssp ----------------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred ----------------------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence 11112223457889999876655544 556789999987543322222111 00
Q ss_pred --ccc-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEE
Q psy2685 248 --FWS-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVL 286 (992)
Q Consensus 248 --~~s-~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~l 286 (992)
+.. .++++....+.|..+|..+++.+..+.........+
T Consensus 296 l~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 296 LAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence 111 344455556667777766666555554333333333
No 280
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.79 E-value=0.0027 Score=69.67 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=117.7
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEecc-----CCCCEEEEEEec-CCCEEEEEEC-------------
Q psy2685 11 RVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDE-----HEGPVRGICFHN-QQPIFVSGGD------------- 71 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~-----h~~~V~~l~fsp-dg~~Lasgs~------------- 71 (992)
.+.++++.|++..|+++...+.|..+|..++.. ..+.. .......+++++ +|...++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 578999998334466665556688888665532 22211 123578899999 9986665432
Q ss_pred ----CCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEECCCCe--eEEEEecCCCCeEEEEEe
Q psy2685 72 ----DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA-SDDQTIRIWNWQSRN--CICVLTGHNHYVMCAQFH 144 (992)
Q Consensus 72 ----Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sg-s~Dg~I~vwdl~t~~--~i~~l~~h~~~V~sl~fs 144 (992)
+|.|..||..+++....... ......++|+|++..+.++ +..+.|.+|++.... ....+....+ ...+++.
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 36788899877765432221 2334679999999866655 556899999987421 1112211223 7788999
Q ss_pred cCCCEEEEEEC----------CCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC
Q psy2685 145 PTDDIVVSASL----------DQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK 214 (992)
Q Consensus 145 pdg~~L~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd 214 (992)
++|++.++... .+.|..+|..+ ..+..+....+. ....++++.+ .+
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G--------------~~~~~~~~~~g~---------~~~~~~~~~~-~~ 293 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG--------------NILEVIPLPPPF---------AGEHFEQIQE-HD 293 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTS--------------CEEEEEECCTTT---------TTSCCCEEEE-ET
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCC--------------CEEEEEECCCCC---------ccccceEEEE-eC
Confidence 99986666544 34566666542 122222211110 0234556665 36
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q psy2685 215 SEVIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 215 g~~L~s~s~Dg~I~vwdl~~ 234 (992)
+.+.++....+.|.++++..
T Consensus 294 g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 294 GLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TEEEEECSSCSEEEEEEC--
T ss_pred CEEEEeecCCCceEEEeccc
Confidence 66666666778888888754
No 281
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.78 E-value=0.0002 Score=90.79 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=103.7
Q ss_pred ccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchH---HHHHHHhCCHHHHHHHHHHHHHHHhhc
Q psy2685 474 ECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKL---AFLYLITGNLEKLKKMMKIAEIRRDIS 550 (992)
Q Consensus 474 ~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l---~~L~~i~~~~ek~~~la~ia~i~~~~~ 550 (992)
..++|++|.+++..++.+..|.+||..-+..|+++.|..+|.+.+|.+.. ...+.-.|+.+.+.+.-.+|-......
T Consensus 1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 77899999999999999999999999999999999999999999876653 333333444444444333331110000
Q ss_pred -hHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH---HHHHHHHHHHhcchhhHHHHhhhcCCHHHHHH
Q psy2685 551 -GQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK---LKKMMKIAEIRRDISGQYQAALLLGEVGERIK 626 (992)
Q Consensus 551 -~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~ 626 (992)
-..+-+..|.+.++.. .+..| . .-......+.|=..++. .+++.++|....++.....+++++|++++|++
T Consensus 1168 ~Idt~LafaYAKl~rle-ele~f---I-~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLA-ELEEF---I-NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred cccHHHHHHHHhhcCHH-HHHHH---H-hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHH
Confidence 0000111111111111 11111 0 00001111112112122 33477899999999999999999999999999
Q ss_pred HHHHcCCcHH-------H-----HHHHHhcC
Q psy2685 627 ILKSCGQTSL-------A-----YLTAATHG 645 (992)
Q Consensus 627 i~~~~~~~~~-------A-----~~~A~~~~ 645 (992)
.+.+++.... + |++|+..|
T Consensus 1243 aarKA~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1243 GARKANSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999988754 2 67787777
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.75 E-value=0.011 Score=62.75 Aligned_cols=217 Identities=11% Similarity=0.136 Sum_probs=129.9
Q ss_pred EeccCCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEc-cCCCCEEEEEEecCCCEEEEEECCCeEEEEECC
Q psy2685 46 KFDEHEGPVRGICFHNQQPIFV-SGGDDYKIKVWNYKQRKCIFTLL-GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ 123 (992)
Q Consensus 46 ~~~~h~~~V~~l~fspdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~ 123 (992)
.+.+-...+.+++|+|+++.|+ +...++.|...|.. ++.+..+. +-......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556899999999877554 57778899999987 88777763 222567889999888766665567889999876
Q ss_pred CCee---EEEEe------cCCCCeEEEEEecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 124 SRNC---ICVLT------GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 124 t~~~---i~~l~------~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
.... +.... ..+.....++|+|+++.|.++.......+|.+++.... ..+.+.+....
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~----------~~l~i~~~~~~--- 166 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS----------NELHISKDKAL--- 166 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS----------SCCEEEECHHH---
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC----------Cceeeecchhh---
Confidence 5432 22222 12344689999999987877777666666665421000 11111110000
Q ss_pred EEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEeeccCcccccCEEEEEeCCCeEEEEECCCCeEE
Q psy2685 195 EVDIFRGHYNNVSCVLFHPKS-EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRTCL 273 (992)
Q Consensus 195 ~i~~l~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~~v 273 (992)
.-..+...+..++++|.. .+++....++.+.++|... +.+ ..+.+..+..
T Consensus 167 ---~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~------------------------~~~~L~~g~~- 217 (255)
T 3qqz_A 167 ---QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVI------------------------GEMSLTKGSR- 217 (255)
T ss_dssp ---HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEE------------------------EEEECSTTGG-
T ss_pred ---ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEE------------------------EEEEcCCccC-
Confidence 000123457889999954 4556666677777777553 232 2223332110
Q ss_pred EEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEe
Q psy2685 274 NTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKF 308 (992)
Q Consensus 274 ~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l 308 (992)
.+......-..|+|.|+|++.+++-.+ .+|.+
T Consensus 218 -~l~~~~~qpEGia~d~~G~lyIvsE~n--~~y~f 249 (255)
T 3qqz_A 218 -GLSHNIKQAEGVAMDASGNIYIVSEPN--RFYRF 249 (255)
T ss_dssp -GCSSCCCSEEEEEECTTCCEEEEETTT--EEEEE
T ss_pred -CcccccCCCCeeEECCCCCEEEEcCCc--eEEEE
Confidence 000111245788999999977774333 44444
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.72 E-value=0.0076 Score=69.35 Aligned_cols=211 Identities=10% Similarity=0.011 Sum_probs=120.4
Q ss_pred CCEEEEEEcCC--CCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCC----e-EEEEEcCC
Q psy2685 10 ARVKGLSFHPK--RPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDY----K-IKVWNYKQ 82 (992)
Q Consensus 10 ~~V~~iafspd--g~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg----~-I~VWd~~t 82 (992)
....+++|+|+ ...|..+...+.|+.+|..++...... .......+++|+++|+ |+.+...+ . +...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34679999995 455666655589999998788665544 3455689999999999 44444321 2 33333222
Q ss_pred CeE-EEEEccCCCCEEEEEEec-CCCEEEEEECCCeEEEEECCCCeeEEEE-e-cCCCCeEEEEEecCCCEEEE-EECCC
Q psy2685 83 RKC-IFTLLGHLDYIRTTFFHH-EYPWILSASDDQTIRIWNWQSRNCICVL-T-GHNHYVMCAQFHPTDDIVVS-ASLDQ 157 (992)
Q Consensus 83 ~~~-~~~l~~h~~~V~~i~fsp-d~~~L~sgs~Dg~I~vwdl~t~~~i~~l-~-~h~~~V~sl~fspdg~~L~s-gs~Dg 157 (992)
+.. ...+. .......++++| ++.+.++-..++.|..+|..++.....+ . +....-..++|+|+++.|.. -...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 110 01111 223456788999 6666666567788999998877652222 2 12223357999999985544 45567
Q ss_pred eEEEEECCCCccccccCCcccCCCeEEEE-Ec-cCCcceEEEEEeccCCCeEEEEE---------cCCCCEEEEEeCCCe
Q psy2685 158 TIRVWDISGLRKKNVAPGMGADDRQIKLW-RM-NDSKAWEVDIFRGHYNNVSCVLF---------HPKSEVIVSNAEDKS 226 (992)
Q Consensus 158 ~I~iwd~~~~~~~~~~~~~~~~d~~I~iw-d~-~~~~~~~i~~l~~h~~~V~~v~f---------spdg~~L~s~s~Dg~ 226 (992)
.|+.++........ .....+ .. .......-......-.....+++ .++|++.++-...+.
T Consensus 296 ~I~~~~~d~~~~~~---------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 296 CIYRVDYNRETGKL---------AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEEEBCTTTCCB---------CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEEeCCCCCccc---------CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 88888865321100 000000 00 00000000000011234567888 677777777777788
Q ss_pred EEEEEC
Q psy2685 227 IRLWDM 232 (992)
Q Consensus 227 I~vwdl 232 (992)
|+.++.
T Consensus 367 I~~~~~ 372 (433)
T 4hw6_A 367 VRVLTP 372 (433)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 888874
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.70 E-value=0.0075 Score=66.33 Aligned_cols=227 Identities=9% Similarity=0.005 Sum_probs=129.0
Q ss_pred CEEEEEEcCCeEEEEEcCCCe--EEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeE-EEEEccCCCCEE
Q psy2685 22 PWILSSLHNGVIQLWDYRMNT--LLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQRKC-IFTLLGHLDYIR 97 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~--~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~~~-~~~l~~h~~~V~ 97 (992)
++|+.+. ...|+.+++.... ....+. ......+++|++.+..|..+. .++.|..++...+.. ...+........
T Consensus 5 p~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 5 PLLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CEEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred cEEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 3555553 4678999987652 212222 223467899999766555554 567899999876532 112222234467
Q ss_pred EEEEecCCC-EEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC--CCeEEEEECCCCccccccC
Q psy2685 98 TTFFHHEYP-WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL--DQTIRVWDISGLRKKNVAP 174 (992)
Q Consensus 98 ~i~fspd~~-~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~ 174 (992)
.+++.+.+. +.++-...+.|.+++++.................++++|.+..|+.+.. .+.|...++.+...
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----- 157 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----- 157 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----
Confidence 889987554 4455556789999998754433334345566789999987666655542 45666666654211
Q ss_pred CcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeeEeeccCccc-----
Q psy2685 175 GMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVI-VSNAEDKSIRLWDMTKRTCLNTFRREQERF----- 248 (992)
Q Consensus 175 ~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~~----- 248 (992)
.......-.....++++|++..| ++-+..+.|..+|+................
T Consensus 158 ---------------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav 216 (318)
T 3sov_A 158 ---------------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL 216 (318)
T ss_dssp ---------------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE
T ss_pred ---------------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 11111223446789999865544 455567889999987532221121111111
Q ss_pred cc-CEEEEEeCCCeEEEEECCCCeEEEEe
Q psy2685 249 WS-EVIVSNAEDKSIRLWDMTKRTCLNTF 276 (992)
Q Consensus 249 ~s-~~l~sgs~Dg~I~vwd~~t~~~v~~l 276 (992)
.. .++++-...+.|..++..+++....+
T Consensus 217 ~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 217 FEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 11 33444445556666666555544433
No 285
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.66 E-value=0.037 Score=60.03 Aligned_cols=123 Identities=9% Similarity=0.016 Sum_probs=77.3
Q ss_pred CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEECC--CeEE
Q psy2685 41 NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDD--QTIR 118 (992)
Q Consensus 41 g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~D--g~I~ 118 (992)
.+.+..+... ....+++|+++|.++++-..++.|..||...+ ....+. ....+..+++.+++.++++.... ..|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 4455566433 45789999999987776667899999997654 333332 34568899999999966655433 2477
Q ss_pred EEECCCCeeEEEEec-CCCCeEEEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 119 IWNWQSRNCICVLTG-HNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 166 (992)
Q Consensus 119 vwdl~t~~~i~~l~~-h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~ 166 (992)
.+|..+++....... .......++..+++..+++.+.++.|.++|..+
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 778777765433321 222334455555444444444577888887654
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.64 E-value=0.22 Score=59.84 Aligned_cols=154 Identities=8% Similarity=-0.084 Sum_probs=97.9
Q ss_pred CCEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEEC--CCeEEEEEcCCCeEE
Q psy2685 10 ARVKGLSFHPKRPWILSS-LHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD--DYKIKVWNYKQRKCI 86 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg-~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~--Dg~I~VWd~~t~~~~ 86 (992)
.....+++.+.+..|..+ ...+.|.+.+.........+...-....+|+++|....|..... .+.|...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 346678888766655544 34678888887644322222233345789999996666666552 568888887654433
Q ss_pred EEEccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q psy2685 87 FTLLGHLDYIRTTFFHHEYPWILSAS-DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165 (992)
Q Consensus 87 ~~l~~h~~~V~~i~fspd~~~L~sgs-~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~ 165 (992)
... ..-.....+++.+++..|..+. ..+.|...|+..... ..+.........+++.. +..+++-...+.|...|..
T Consensus 160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 223 3456688999999877666654 567899999875443 33444445566788764 4445555557788888754
Q ss_pred C
Q psy2685 166 G 166 (992)
Q Consensus 166 ~ 166 (992)
+
T Consensus 237 t 237 (628)
T 4a0p_A 237 S 237 (628)
T ss_dssp T
T ss_pred C
Confidence 3
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.62 E-value=0.033 Score=61.29 Aligned_cols=258 Identities=11% Similarity=0.049 Sum_probs=136.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec----cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD----EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK 84 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~ 84 (992)
...+.++.|.+++..+++ +..|.| +...+.|+.-.... .....+.+|.|++ +.. ..++.+|.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~-~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEG-WIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEE-EEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeE-EEEECCCeEEE-ECCCCC
Confidence 457999999888877775 467765 33334443222221 1244689999987 444 44456665543 223344
Q ss_pred EEEEEc---cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE-EecCCCCeEEEEEecCCCEEEEEECCCeEE
Q psy2685 85 CIFTLL---GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICV-LTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160 (992)
Q Consensus 85 ~~~~l~---~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~-l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~ 160 (992)
...... .+.+.+..+.+.+++..++++ .+|.|.. ..+.++.-.. ..++...+..+.+.|++.+++.+. +|.+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~ 186 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFY 186 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEE
Confidence 333322 234567888887777655544 5665432 2223433222 234566789999999888776654 44443
Q ss_pred E-EECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee
Q psy2685 161 V-WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLN 239 (992)
Q Consensus 161 i-wd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~ 239 (992)
. +|-.+.. +... -......+..+.+.|++.+++ ++.+|.+.+.+...+..-.
T Consensus 187 ~S~d~gG~t-------------------------W~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 187 STWEPGQTA-------------------------WEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp EEECTTCSS-------------------------CEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC
T ss_pred EEeCCCCCc-------------------------eeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE
Confidence 3 2321111 2221 123456788889999887654 4567877776433233222
Q ss_pred Eeecc---C-cccc------cCEEEEEeCCCeEEEEECCCCeEEEEeec---CCCCEEEEEEeCCCCEEEEEECCCE
Q psy2685 240 TFRRE---Q-ERFW------SEVIVSNAEDKSIRLWDMTKRTCLNTFRR---EQERFWVLVAHPTLNLFAAGHDAGM 303 (992)
Q Consensus 240 ~~~~~---~-~~~~------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~---h~~~V~~la~spdg~~Lasgsddgi 303 (992)
.+... . ..+. ...++.++.++.+ .+....++.-..+.. ....+.++.|.+++.++++|. +|.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~ 314 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ-KGI 314 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS-TTE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC-Cce
Confidence 11111 0 0111 1334444556666 333444433233321 235678888887666666654 443
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.56 E-value=0.03 Score=61.48 Aligned_cols=205 Identities=9% Similarity=0.035 Sum_probs=126.1
Q ss_pred CEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCeE-EEEeccCCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEE
Q psy2685 11 RVKGLSFHPKRPWILSS-LHNGVIQLWDYRMNTL-LEKFDEHEGPVRGICFHNQQPIFV-SGGDDYKIKVWNYKQRKCIF 87 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg-~~dg~I~IWd~~~g~~-~~~~~~h~~~V~~l~fspdg~~La-sgs~Dg~I~VWd~~t~~~~~ 87 (992)
.+.+++|++.+..|..+ ...+.|..++...+.. ...+...-....++++++.+..|+ +-...+.|.+.+........
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 46688899865555544 4567899998765532 112222223457899997555554 44457799999986544333
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEEC
Q psy2685 88 TLLGHLDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDI 164 (992)
Q Consensus 88 ~l~~h~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd~ 164 (992)
...........+++.|.+..++.+.. .+.|...+++...........-.....++++|++..|..+. ..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 33344566799999997666666553 57888888764333222333345578999998776555554 4567777776
Q ss_pred CCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEee
Q psy2685 165 SGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFR 242 (992)
Q Consensus 165 ~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~ 242 (992)
.+... .....+.......+++. .+.++++-...+.|..++..+|+....+.
T Consensus 196 dG~~~--------------------------~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 196 DGTNR--------------------------QAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TSCSC--------------------------EEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCce--------------------------EEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 54211 11112223345566665 34566666677889999987776555443
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.54 E-value=0.055 Score=66.85 Aligned_cols=209 Identities=9% Similarity=-0.047 Sum_probs=128.3
Q ss_pred CCCCEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCC----eEEEEeccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcC
Q psy2685 8 KSARVKGLSFHPKRPWILSS-LHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHNQQPIFVSG-GDDYKIKVWNYK 81 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg-~~dg~I~IWd~~~g----~~~~~~~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~VWd~~ 81 (992)
....+.+++|++....|+.+ ...+.|+.+++... .....+........+|++++.+..|+.+ ...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 44567899999866655544 44678888887642 2233333344556789999887655554 457899999987
Q ss_pred CCeEEEEEccCCCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCe
Q psy2685 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQT 158 (992)
Q Consensus 82 t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~ 158 (992)
.......+.......+.|++.|.+.+|+.+.. .+.|...++........+.........|++++.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 65544444444566899999998666666553 26899999875544444444456788999998776665554 3456
Q ss_pred EEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy2685 159 IRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCL 238 (992)
Q Consensus 159 I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l 238 (992)
|...++.+... ..+..-.+.-.....+++.. +.++++-...+.|...|..+|+.+
T Consensus 582 I~~~d~dG~~~------------------------~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 582 ISSIDVNGGNR------------------------KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEETTSCSC------------------------EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEEecCCCce------------------------EEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 77777654321 11111111122344566543 345555556678888887777655
Q ss_pred eEe
Q psy2685 239 NTF 241 (992)
Q Consensus 239 ~~~ 241 (992)
..+
T Consensus 637 ~~l 639 (791)
T 3m0c_C 637 NLL 639 (791)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 290
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.52 E-value=0.0038 Score=77.26 Aligned_cols=110 Identities=7% Similarity=0.063 Sum_probs=72.8
Q ss_pred CEEEEEEe-cCCCEEEEEEC-CC----eEEEEEcCCC-eEEE-EEccCCCCEEEEEEecCCCEEEEEECC-----CeEEE
Q psy2685 53 PVRGICFH-NQQPIFVSGGD-DY----KIKVWNYKQR-KCIF-TLLGHLDYIRTTFFHHEYPWILSASDD-----QTIRI 119 (992)
Q Consensus 53 ~V~~l~fs-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~~~-~l~~h~~~V~~i~fspd~~~L~sgs~D-----g~I~v 119 (992)
.+...+|| |||++|+.+.. +| .|.++|+.++ +.+. .+. .....+.|+||++.|+....| ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 33 5999999988 6321 111 112457899999888777665 36888
Q ss_pred EECCCCee--EEEEe-cCCCCeEEEEEecCCCEEEEEECC---CeEEEEECC
Q psy2685 120 WNWQSRNC--ICVLT-GHNHYVMCAQFHPTDDIVVSASLD---QTIRVWDIS 165 (992)
Q Consensus 120 wdl~t~~~--i~~l~-~h~~~V~sl~fspdg~~L~sgs~D---g~I~iwd~~ 165 (992)
+++.++.. ...+. .+.....++.|+|||++|+..+.+ ..|.++|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 88877642 23333 233456788999999988876633 234444443
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.48 E-value=0.002 Score=78.46 Aligned_cols=111 Identities=5% Similarity=0.001 Sum_probs=70.6
Q ss_pred EEEEec-CCCEEEEEECCC-----------eEEEEEcCCCeEE--EEE-ccCCCCEEEEEEecCCCEEEEEEC-CCeEEE
Q psy2685 56 GICFHN-QQPIFVSGGDDY-----------KIKVWNYKQRKCI--FTL-LGHLDYIRTTFFHHEYPWILSASD-DQTIRI 119 (992)
Q Consensus 56 ~l~fsp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~~--~~l-~~h~~~V~~i~fspd~~~L~sgs~-Dg~I~v 119 (992)
+.++.| +++.++.|+.++ .+.+||..+++.. ..+ ..+.....++++..++.++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887643 5888998877532 222 223333445778899999999984 568999
Q ss_pred EECCCCeeEEEEecCC-CCeEEEEEecCCCEEEEEE-CC-----CeEEEEECCC
Q psy2685 120 WNWQSRNCICVLTGHN-HYVMCAQFHPTDDIVVSAS-LD-----QTIRVWDISG 166 (992)
Q Consensus 120 wdl~t~~~i~~l~~h~-~~V~sl~fspdg~~L~sgs-~D-----g~I~iwd~~~ 166 (992)
||..+++-...-..+. ..-.+++..+++++++.|+ .+ ..+.+||..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 9998765433211111 1123455667888888888 34 3456666554
No 292
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.45 E-value=7.7e-05 Score=84.98 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=33.4
Q ss_pred ccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchHH
Q psy2685 474 ECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQY 553 (992)
Q Consensus 474 ~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~~ 553 (992)
.+|++++|.+.+...+++..|..||+.+++.|+++.|+.+|.++.|++....+-..-.. .+.++
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~----------------~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANT----------------SGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHh----------------CCCHH
Confidence 57889999999999999999999999999999999999999999998876554333222 22233
Q ss_pred HHHH--------------------HHHhcCCcccccccc--hhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhH
Q psy2685 554 QAAL--------------------LLGRMGRGFFLLHYF--SFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQ 611 (992)
Q Consensus 554 eaa~--------------------l~~~~g~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~ 611 (992)
+|.. ++.++|+-+.+..-+ |.. .+....-.-|. +....+++..+|.....+...
T Consensus 79 eAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~-~a~~~IGd~~~---~~g~yeeA~~~Y~~a~n~~~L 154 (449)
T 1b89_A 79 ELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCY---DEKMYDAAKLLYNNVSNFGRL 154 (449)
T ss_dssp ------------------------------CHHHHTTTTTCC--------------------CTTTHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcH-HHHHHHHHHHH---HcCCHHHHHHHHHHhhhHHHH
Confidence 3333 222222222111111 100 00000000000 111123366778777888878
Q ss_pred HHHhhhcCCHHHHHHHHHHcCCc
Q psy2685 612 YQAALLLGEVGERIKILKSCGQT 634 (992)
Q Consensus 612 ~~~al~lg~~~eai~i~~~~~~~ 634 (992)
..++..+|++++|++.+.+++..
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKANST 177 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHcCCc
Confidence 88899999999998888888765
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.014 Score=66.99 Aligned_cols=115 Identities=6% Similarity=0.100 Sum_probs=73.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcC-C----eEEEEEcCCCeEE--EEeccCCCCEEEEEEec-CCCEEEEEECCCeEEEE
Q psy2685 7 TKSARVKGLSFHPKRPWILSSLHN-G----VIQLWDYRMNTLL--EKFDEHEGPVRGICFHN-QQPIFVSGGDDYKIKVW 78 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~~d-g----~I~IWd~~~g~~~--~~~~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~VW 78 (992)
........++|++++++|+++... + .+...+ ..+... ..+.. .....+++++| +|.++++-..++.|..+
T Consensus 176 ~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~ 253 (430)
T 3tc9_A 176 SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRY 253 (430)
T ss_dssp CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEE
Confidence 344568899999999977766542 1 344444 333221 22221 22346788999 67666666678899999
Q ss_pred EcCCCeEEEEEc-cCCCCEEEEEEecCCCEEEE-EECCCeEEEEECC
Q psy2685 79 NYKQRKCIFTLL-GHLDYIRTTFFHHEYPWILS-ASDDQTIRIWNWQ 123 (992)
Q Consensus 79 d~~t~~~~~~l~-~h~~~V~~i~fspd~~~L~s-gs~Dg~I~vwdl~ 123 (992)
+..++....... +.....+.++|+|++++|.. -...+.|..++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 254 DFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 988776532222 22245789999999995544 4567889998765
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.37 E-value=0.031 Score=61.05 Aligned_cols=158 Identities=10% Similarity=0.154 Sum_probs=110.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCeEEEE-ecc----CC--CCEEEEEE---ecCCCEEEEEEC----
Q psy2685 7 TKSARVKGLSFHPKRPWILSSL-HNGVIQLWDYRMNTLLEK-FDE----HE--GPVRGICF---HNQQPIFVSGGD---- 71 (992)
Q Consensus 7 ~H~~~V~~iafspdg~~Lasg~-~dg~I~IWd~~~g~~~~~-~~~----h~--~~V~~l~f---spdg~~Lasgs~---- 71 (992)
+...-.-++.|++....+..++ ..|.|..||...+..... +.. .. ..+.+|.| .|++.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3334455889998766666666 799999999875644333 322 11 13689999 688777665442
Q ss_pred ---------CCeEEEEEcC---CCeEEEEEc--cC-----------CCCEEEEEEecCCCEEEEEECC-CeEEEEECCCC
Q psy2685 72 ---------DYKIKVWNYK---QRKCIFTLL--GH-----------LDYIRTTFFHHEYPWILSASDD-QTIRIWNWQSR 125 (992)
Q Consensus 72 ---------Dg~I~VWd~~---t~~~~~~l~--~h-----------~~~V~~i~fspd~~~L~sgs~D-g~I~vwdl~t~ 125 (992)
+..+..+|+. +++.+.... .. ......++..++|+..++++.- +.|...+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 5789999998 777665543 11 1247899999999999999888 88888886543
Q ss_pred eeEEEEe--c----CCCCeEEEEEecCCCEEEEEECCCeEEEEECC
Q psy2685 126 NCICVLT--G----HNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 165 (992)
Q Consensus 126 ~~i~~l~--~----h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~ 165 (992)
.+..+. . .....+.++++|+++.|++....|.+..+|+.
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 333221 1 11235689999999988888779999999986
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.30 E-value=0.12 Score=63.81 Aligned_cols=187 Identities=6% Similarity=-0.052 Sum_probs=116.0
Q ss_pred CEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCC----eEEEEEccCCCCE
Q psy2685 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG-GDDYKIKVWNYKQR----KCIFTLLGHLDYI 96 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~VWd~~t~----~~~~~l~~h~~~V 96 (992)
.+|+.+. ...|+..++.......... ....+.+|+|++.+..|+.+ ...+.|..+++... .....+.......
T Consensus 396 p~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 396 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CEEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 3555543 4568888877655444333 45567899999966655554 45678999988653 2223333344566
Q ss_pred EEEEEecCCCEEE-EEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC-C-CeEEEEECCCCcccccc
Q psy2685 97 RTTFFHHEYPWIL-SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL-D-QTIRVWDISGLRKKNVA 173 (992)
Q Consensus 97 ~~i~fspd~~~L~-sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-D-g~I~iwd~~~~~~~~~~ 173 (992)
..|++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. + +.|...++.+..
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----- 548 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----- 548 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-----
Confidence 7899998775554 4456789999998765544444445566889999997666655542 2 566666665421
Q ss_pred CCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe
Q psy2685 174 PGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSN-AEDKSIRLWDMTKRT 236 (992)
Q Consensus 174 ~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~vwdl~~~~ 236 (992)
........-.....|++++.+..|..+ ...+.|..+++....
T Consensus 549 ---------------------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 549 ---------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp ---------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ---------------------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 111122233467889999766555544 556789999986543
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.27 E-value=0.089 Score=57.97 Aligned_cols=197 Identities=9% Similarity=0.157 Sum_probs=123.6
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecC----CC---EEEEEEC---CCeEEEEEc--CCCeEEE
Q psy2685 20 KRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQ----QP---IFVSGGD---DYKIKVWNY--KQRKCIF 87 (992)
Q Consensus 20 dg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspd----g~---~Lasgs~---Dg~I~VWd~--~t~~~~~ 87 (992)
...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++... +++|.++++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456676777889999998 8888888853 67788877663 22 2333333 579999977 3444 44
Q ss_pred EEcc------CC-CCEEEEEE--ecC-CC-EEEEEECCCeEEEEECC-------CCeeEEEEecCCCCeEEEEEecCCCE
Q psy2685 88 TLLG------HL-DYIRTTFF--HHE-YP-WILSASDDQTIRIWNWQ-------SRNCICVLTGHNHYVMCAQFHPTDDI 149 (992)
Q Consensus 88 ~l~~------h~-~~V~~i~f--spd-~~-~L~sgs~Dg~I~vwdl~-------t~~~i~~l~~h~~~V~sl~fspdg~~ 149 (992)
.+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+.++.. .+.+..+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 4421 11 45666777 664 43 67888889999999883 3355666664 457888889988899
Q ss_pred EEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEe-cc-CCCeEEEEE--cCCCC-EEEEEe-C
Q psy2685 150 VVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR-GH-YNNVSCVLF--HPKSE-VIVSNA-E 223 (992)
Q Consensus 150 L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~-~h-~~~V~~v~f--spdg~-~L~s~s-~ 223 (992)
|+.+-++.-|..++.+..... .+ ..+.... ++ ...+..++. .++++ +|+++| .
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~---------~~------------~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGS---------NG------------TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCS---------CC------------EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred EEEecccceEEEEeCCcCCCC---------Cc------------eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 999999866655554321100 01 1222221 22 235677776 44544 555555 5
Q ss_pred CCeEEEEECC-CCeeeeEee
Q psy2685 224 DKSIRLWDMT-KRTCLNTFR 242 (992)
Q Consensus 224 Dg~I~vwdl~-~~~~l~~~~ 242 (992)
+.+..+||.. +.+.+..|.
T Consensus 253 ~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 253 NSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GTEEEEEESSTTCCEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEE
Confidence 7789999886 455555544
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.26 E-value=0.018 Score=66.17 Aligned_cols=209 Identities=10% Similarity=0.092 Sum_probs=115.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEEcCCCeE-EEEeccCCCCEEEEEEec-CCCEEEEEECCCeEEEEEc
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNG-----VIQLWDYRMNTL-LEKFDEHEGPVRGICFHN-QQPIFVSGGDDYKIKVWNY 80 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg-----~I~IWd~~~g~~-~~~~~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~VWd~ 80 (992)
......+++|+|+|. |+++...+ .+...+...+.. ...+. .-....+++++| +|.+.++-..++.|..+|.
T Consensus 180 ~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 180 NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 445688999999999 55554322 233333222211 01111 123346788999 6666555556789999998
Q ss_pred CCCeEEEEE-c-cCCCCEEEEEEecCCCEEEEE-ECCCeEEEEECC--CCee--EEEEecC---------------CCCe
Q psy2685 81 KQRKCIFTL-L-GHLDYIRTTFFHHEYPWILSA-SDDQTIRIWNWQ--SRNC--ICVLTGH---------------NHYV 138 (992)
Q Consensus 81 ~t~~~~~~l-~-~h~~~V~~i~fspd~~~L~sg-s~Dg~I~vwdl~--t~~~--i~~l~~h---------------~~~V 138 (992)
.++.....+ . +....-..++|+|+++.|..+ ...+.|..+++. ++.. ..++.+. -...
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P 337 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP 337 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence 877653322 2 122233579999999955554 456889998865 2321 1222221 1235
Q ss_pred EEEEE---------ecCCCEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCC--cceEEEE---EeccCC
Q psy2685 139 MCAQF---------HPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS--KAWEVDI---FRGHYN 204 (992)
Q Consensus 139 ~sl~f---------spdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~--~~~~i~~---l~~h~~ 204 (992)
..+++ .+++++.++-+.++.|+.++..+ .+...--... ..-...- ....-.
T Consensus 338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G---------------~v~t~~G~g~~~~~G~~dG~~~~~~~~~ 402 (433)
T 4hw6_A 338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG---------------RVTTYAGRGNSREWGYVDGELRSQALFN 402 (433)
T ss_dssp EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS---------------EEEEEECCCTTCSSCCBCEETTTTCBCS
T ss_pred ccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC---------------CEEEEEeCCCCCccccCCCccccccEeC
Confidence 66888 56666666666667777777532 1111110000 0000000 001123
Q ss_pred CeEEEEEc-CCCCEEEEEeCCCeEEEEECC
Q psy2685 205 NVSCVLFH-PKSEVIVSNAEDKSIRLWDMT 233 (992)
Q Consensus 205 ~V~~v~fs-pdg~~L~s~s~Dg~I~vwdl~ 233 (992)
....++++ ++|.++++-...+.|+.++++
T Consensus 403 ~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 403 HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 46788999 677777777777888887653
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.16 Score=58.98 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=97.2
Q ss_pred CEEEEEEcC-CCCEEEEEEc-CCeEEEEEcCCCeEEEEeccC---CCCEEEEEE-------ecCCCEEEEEECCC-----
Q psy2685 11 RVKGLSFHP-KRPWILSSLH-NGVIQLWDYRMNTLLEKFDEH---EGPVRGICF-------HNQQPIFVSGGDDY----- 73 (992)
Q Consensus 11 ~V~~iafsp-dg~~Lasg~~-dg~I~IWd~~~g~~~~~~~~h---~~~V~~l~f-------spdg~~Lasgs~Dg----- 73 (992)
....|+|+| ++..|.++.. .+.|++.|..++......... ......++| +++|..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467999999 4555555544 467999998877665544332 235899999 99999777766554
Q ss_pred --eEEEEEcCC-CeEE-----EEEccCCCCEEEEEEecC-CCEEEEEECCCeEEEEECC-------CCee----------
Q psy2685 74 --KIKVWNYKQ-RKCI-----FTLLGHLDYIRTTFFHHE-YPWILSASDDQTIRIWNWQ-------SRNC---------- 127 (992)
Q Consensus 74 --~I~VWd~~t-~~~~-----~~l~~h~~~V~~i~fspd-~~~L~sgs~Dg~I~vwdl~-------t~~~---------- 127 (992)
.|.+.+... +... ..+... .....++.+|+ +.++++-..++.|..+|++ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665333 1211 112111 12356788995 4555566677889999987 5543
Q ss_pred -EEE-Ee-cCCCCeEEEEEecCCCEE-EEEECCCeEEEEECCC
Q psy2685 128 -ICV-LT-GHNHYVMCAQFHPTDDIV-VSASLDQTIRVWDISG 166 (992)
Q Consensus 128 -i~~-l~-~h~~~V~sl~fspdg~~L-~sgs~Dg~I~iwd~~~ 166 (992)
... +. +.......++|+|+++.| ++-+..+.|+.++..+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 111 11 223456899999999954 4445667888876543
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.19 E-value=0.02 Score=62.52 Aligned_cols=160 Identities=11% Similarity=0.187 Sum_probs=111.5
Q ss_pred EEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEccC-----C--CCEEEEEE---ecCCCEEEEEEC---------
Q psy2685 54 VRGICFHNQQPIFVSGG-DDYKIKVWNYKQRKCIFTLLGH-----L--DYIRTTFF---HHEYPWILSASD--------- 113 (992)
Q Consensus 54 V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l~~h-----~--~~V~~i~f---spd~~~L~sgs~--------- 113 (992)
-.+++|++....|..++ ..|+|..||...+......... . ..+..+.| .|++.++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 35689998777676666 6899999998766443332221 1 13578999 588777665431
Q ss_pred ----CCeEEEEECC---CCeeEEEEec-------------CCCCeEEEEEecCCCEEEEEECC-CeEEEEECCCCccccc
Q psy2685 114 ----DQTIRIWNWQ---SRNCICVLTG-------------HNHYVMCAQFHPTDDIVVSASLD-QTIRVWDISGLRKKNV 172 (992)
Q Consensus 114 ----Dg~I~vwdl~---t~~~i~~l~~-------------h~~~V~sl~fspdg~~L~sgs~D-g~I~iwd~~~~~~~~~ 172 (992)
+..|..+|+. +++.+....- -......++..++|+..++++.. +.|...+..+
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG------ 168 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG------ 168 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS------
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC------
Confidence 6789999998 7777665541 11247899999999999999988 8887777664
Q ss_pred cCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy2685 173 APGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 173 ~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~ 234 (992)
..+..|.+..+. .......+.+.++|+|+.|++...++.+..+|+..
T Consensus 169 --------~~~~~~~~~~~~-------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 --------KTVSTFAWESGN-------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp --------CCEEEEEECCCC-------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred --------CEEeeeeecCCC-------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 334455443211 11123467899999999888887799999999873
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.17 E-value=0.17 Score=56.22 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=83.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeE--EEEec---cCCCCEEEEEEecC---CCEEEEEEC-C-----C
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTL--LEKFD---EHEGPVRGICFHNQ---QPIFVSGGD-D-----Y 73 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~--~~~~~---~h~~~V~~l~fspd---g~~Lasgs~-D-----g 73 (992)
.-.....++|.|+|. ++++..+|.|.+++ +++. +..+. .......+|+|+|+ +..|.++.. + +
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 344678999999998 45556679999998 4542 22221 12356899999998 555555443 2 6
Q ss_pred eEEEEEcCCCe-----EE-EEEc---cCCCCEEEEEEecCCCEEEEEECC-------------CeEEEEECCCC------
Q psy2685 74 KIKVWNYKQRK-----CI-FTLL---GHLDYIRTTFFHHEYPWILSASDD-------------QTIRIWNWQSR------ 125 (992)
Q Consensus 74 ~I~VWd~~t~~-----~~-~~l~---~h~~~V~~i~fspd~~~L~sgs~D-------------g~I~vwdl~t~------ 125 (992)
.|..++...+. .+ ..+. +.......++|.|+|.+.++.++. |.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 78888876442 11 1232 111223689999999766664432 55666665430
Q ss_pred -------eeEEEEecCCCCeEEEEEec-CCCEEEEEE
Q psy2685 126 -------NCICVLTGHNHYVMCAQFHP-TDDIVVSAS 154 (992)
Q Consensus 126 -------~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs 154 (992)
.......++ .....++|+| ++.++++-.
T Consensus 186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 111111223 2356788999 566555443
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.93 E-value=0.06 Score=59.14 Aligned_cols=191 Identities=8% Similarity=0.011 Sum_probs=109.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-EEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEc--CCCeE
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT-LLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNY--KQRKC 85 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~-~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~--~t~~~ 85 (992)
.+.+..+.+.+++..++++ .+|.|.. ..+.|+ .......+...+.++.++|++.+++++...+..+-+|- .+-+.
T Consensus 121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE
Confidence 3457888887777666655 4665432 223343 22333345668999999999887776644433333442 22233
Q ss_pred EEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe-c---CCCCeEEEEEecCCCEEEEEECCCeEEE
Q psy2685 86 IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT-G---HNHYVMCAQFHPTDDIVVSASLDQTIRV 161 (992)
Q Consensus 86 ~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~-~---h~~~V~sl~fspdg~~L~sgs~Dg~I~i 161 (992)
+ -......+..+.+.+++..+ .++.+|.+.+.+.+.++....+. . +...+.++.+.+++..++++ .+|.+.
T Consensus 199 ~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~- 273 (327)
T 2xbg_A 199 H--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL- 273 (327)
T ss_dssp E--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-
T ss_pred C--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-
Confidence 2 23455678899999988754 55677888777533233322222 1 22358899999877766655 466663
Q ss_pred EECCCCccccccCCcccCCCeEEEEEccCCcceEEEEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy2685 162 WDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIF-RGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231 (992)
Q Consensus 162 wd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l-~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwd 231 (992)
+..+++. .|..... ......+.++.|.+++. +++++.+|.|.-++
T Consensus 274 ~S~DgG~------------------------tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 274 CSQDGGQ------------------------TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EESSTTS------------------------SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EeCCCCc------------------------ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 3333221 1211110 01234577788875554 66667788876664
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.92 E-value=0.66 Score=50.33 Aligned_cols=231 Identities=9% Similarity=0.125 Sum_probs=143.2
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEE
Q psy2685 31 GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS 110 (992)
Q Consensus 31 g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~s 110 (992)
..|.|.|+.++....+..-.. -+.-.||..+.+|.=. ..+++++|+++...+..+.-. .+|.-=.|-.+. .|+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A---dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEE
T ss_pred CEEEEEECCCCCCcccccccc---ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEE
Confidence 378888887754433221111 1233589888777755 679999999999988887643 466666665554 3444
Q ss_pred EECCCeEEEEECCC-CeeEEEEecC----CCCeEEEEEecCCCEEEEEEC---CCeEEEEECCCCccccccCCcccCCCe
Q psy2685 111 ASDDQTIRIWNWQS-RNCICVLTGH----NHYVMCAQFHPTDDIVVSASL---DQTIRVWDISGLRKKNVAPGMGADDRQ 182 (992)
Q Consensus 111 gs~Dg~I~vwdl~t-~~~i~~l~~h----~~~V~sl~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~d~~ 182 (992)
.+. ..|.-|++.. ..+...+..| ...|..-..+++.+|++..+- ++.|. |.
T Consensus 123 VT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~--------------------G~ 181 (365)
T 2xzh_A 123 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV--------------------GA 181 (365)
T ss_dssp EES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEE--------------------EE
T ss_pred EcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccc--------------------ee
Confidence 443 4799999974 4566666655 356888888999998877653 33221 66
Q ss_pred EEEEEccCCcceEEEEEeccCCCeEEEEEcCC---CCEEEEEeC---CCeEEEEECCCC---ee-----eeEeeccCccc
Q psy2685 183 IKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK---SEVIVSNAE---DKSIRLWDMTKR---TC-----LNTFRREQERF 248 (992)
Q Consensus 183 I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd---g~~L~s~s~---Dg~I~vwdl~~~---~~-----l~~~~~~~~~~ 248 (992)
+.+|..+.. ....+.||......+....+ ..+++.+.. .+.+.+-++... .+ ...+..+.+..
T Consensus 182 mQLYS~er~---~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~ 258 (365)
T 2xzh_A 182 MQLYSVDRK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 258 (365)
T ss_dssp EEEEETTTT---EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCT
T ss_pred EEEEeeccc---ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcccc
Confidence 677766654 34567777655544433221 123333332 257888887432 11 11111111110
Q ss_pred c-----------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCC
Q psy2685 249 W-----------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT 291 (992)
Q Consensus 249 ~-----------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spd 291 (992)
. -..+..-+.-|.++++|+.++.++..-+-..+.|-..+-+.+
T Consensus 259 ~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~ 312 (365)
T 2xzh_A 259 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 312 (365)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGG
T ss_pred CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCC
Confidence 0 167888899999999999999999888777777665555443
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.83 E-value=0.77 Score=49.79 Aligned_cols=209 Identities=12% Similarity=0.158 Sum_probs=135.1
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEccC
Q psy2685 14 GLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ-RKCIFTLLGH 92 (992)
Q Consensus 14 ~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h 92 (992)
+.-.||..+.+|.-. ..+++|+|+++.+.++.+.- ..+|.-=.|-.+. .|+..+ +..|.-|++.. ..+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 345689888888765 78999999999998888764 4678777886554 444444 34899999864 4566666555
Q ss_pred C----CCEEEEEEecCCCEEEEEEC-------CCeEEEEECCCCeeEEEEecCCCCeEEEEEecC---CCEEEEEECC--
Q psy2685 93 L----DYIRTTFFHHEYPWILSASD-------DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPT---DDIVVSASLD-- 156 (992)
Q Consensus 93 ~----~~V~~i~fspd~~~L~sgs~-------Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspd---g~~L~sgs~D-- 156 (992)
. ..|..-..+++.+|++..|- .|.+.+|..+ ++..+.+.||......+..... .++++.+...
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-ccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 45667777888898775442 3788899975 4556777888654433322111 1234434332
Q ss_pred -CeEEEEECCCCc-cccccCCcccCCCeEEEEEccCCcceEEEEEe---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy2685 157 -QTIRVWDISGLR-KKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR---GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231 (992)
Q Consensus 157 -g~I~iwd~~~~~-~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~---~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwd 231 (992)
+.+++-++.... ..... ..+ ....+. ...+-..++..++....+..-+.-|.+.+||
T Consensus 226 g~kLhIiEi~~~~~~~~~f-----~kk-------------~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyD 287 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPF-----PKK-------------AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYD 287 (365)
T ss_dssp EEEEEEEECSSCCTTCCCC-----CCE-------------EEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred CcEEEEEEcCCCCCCCCCc-----ccc-------------cceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEE
Confidence 467777764321 00000 001 111111 1245567889999888999999999999999
Q ss_pred CCCCeeeeEeeccC
Q psy2685 232 MTKRTCLNTFRREQ 245 (992)
Q Consensus 232 l~~~~~l~~~~~~~ 245 (992)
+.++.++..-+...
T Consensus 288 leTgt~i~~nrIS~ 301 (365)
T 2xzh_A 288 LETGTCIYMNRISG 301 (365)
T ss_dssp TTTCCEEEEEECCS
T ss_pred cccCcEEEEeccCC
Confidence 99999887665443
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.81 E-value=0.4 Score=53.19 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=82.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-EEEEec---cCCCCEEEEEEecC---CCEEEEEEC----C----C
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNT-LLEKFD---EHEGPVRGICFHNQ---QPIFVSGGD----D----Y 73 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~-~~~~~~---~h~~~V~~l~fspd---g~~Lasgs~----D----g 73 (992)
-....+++|.|+|. |+++..+|.|.+++ .+++ .+..+. .......+|+|+|+ +..|.++.. + +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997 55556679999997 5665 222221 12356899999998 455554433 3 5
Q ss_pred eEEEEEcCCC-------eEE-EEEcc-CCCCEEEEEEecCCCEEEEEEC-------------CCeEEEEECCCC------
Q psy2685 74 KIKVWNYKQR-------KCI-FTLLG-HLDYIRTTFFHHEYPWILSASD-------------DQTIRIWNWQSR------ 125 (992)
Q Consensus 74 ~I~VWd~~t~-------~~~-~~l~~-h~~~V~~i~fspd~~~L~sgs~-------------Dg~I~vwdl~t~------ 125 (992)
.|..|+...+ +.+ ..+.. .......+.|.|+|.+.++.++ .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7777877654 111 11221 1122467999999987776443 245666655421
Q ss_pred ---eeEEEEecCCCCeEEEEEec-CCCEEEE
Q psy2685 126 ---NCICVLTGHNHYVMCAQFHP-TDDIVVS 152 (992)
Q Consensus 126 ---~~i~~l~~h~~~V~sl~fsp-dg~~L~s 152 (992)
..+. ..++. ....++|+| ++.++++
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVAT 214 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEE
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEE
Confidence 1121 22332 345789999 5554444
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.77 E-value=0.0019 Score=79.15 Aligned_cols=207 Identities=10% Similarity=-0.035 Sum_probs=114.2
Q ss_pred CCEEEEEEcCCCCEEEEEE-cCCeEEEEEcCC----CeEEEEeccCCCCEEEEEEecCCCEE-EEEECCCeEEEEEcCCC
Q psy2685 10 ARVKGLSFHPKRPWILSSL-HNGVIQLWDYRM----NTLLEKFDEHEGPVRGICFHNQQPIF-VSGGDDYKIKVWNYKQR 83 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~-~dg~I~IWd~~~----g~~~~~~~~h~~~V~~l~fspdg~~L-asgs~Dg~I~VWd~~t~ 83 (992)
..+.+++|++.+..|+.+. ..+.|..+++.. ......+...-....+|++++.+..| ++-...+.|.+.+....
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466889998777666654 457899998764 12212221112234578888654444 44445678999998765
Q ss_pred eEEEEEccCCCCEEEEEEecCCCEEEEEEC--CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEE-EEEECCCeEE
Q psy2685 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASD--DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIV-VSASLDQTIR 160 (992)
Q Consensus 84 ~~~~~l~~h~~~V~~i~fspd~~~L~sgs~--Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~Dg~I~ 160 (992)
.....+.........+++.|.+.+|+.+.. .+.|..+++..................++|+|++..| ++-+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 443333333345678899986655554432 2678888775432222222223456789999876544 4444566787
Q ss_pred EEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE
Q psy2685 161 VWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNT 240 (992)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~ 240 (992)
.+++.+.... .+............+++..+ .++++....+.|..++..+|+.+..
T Consensus 566 ~~d~dG~~~~------------------------~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 566 SIDVNGGNRK------------------------TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp EECSSSSCCE------------------------EECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEccCCCceE------------------------EEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence 7777542110 01000011112233444433 4555555567788887766665544
Q ss_pred e
Q psy2685 241 F 241 (992)
Q Consensus 241 ~ 241 (992)
+
T Consensus 621 i 621 (699)
T 1n7d_A 621 L 621 (699)
T ss_dssp C
T ss_pred e
Confidence 4
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.70 E-value=0.0025 Score=78.06 Aligned_cols=222 Identities=7% Similarity=-0.033 Sum_probs=125.0
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC----CeEEEEEccCCCCEEEEEEecC
Q psy2685 30 NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-DDYKIKVWNYKQ----RKCIFTLLGHLDYIRTTFFHHE 104 (992)
Q Consensus 30 dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~i~fspd 104 (992)
.+.|+..++.++.....+.. ...+.+++|++.+..|+.+. ..+.|..+++.. ......+.........+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 45788888777655444433 34567899999877776654 457899999865 1211111111223456788754
Q ss_pred C-CEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC-C-CeEEEEECCCCccccccCCcccCCC
Q psy2685 105 Y-PWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL-D-QTIRVWDISGLRKKNVAPGMGADDR 181 (992)
Q Consensus 105 ~-~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-D-g~I~iwd~~~~~~~~~~~~~~~~d~ 181 (992)
+ .++++-...+.|.++++........+.........++++|.+..|+.+.. . +.|..+++.+...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------------ 531 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------ 531 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------------
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------------
Confidence 4 44444456688999998755433333333345677888886654444332 2 5565555543211
Q ss_pred eEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEeecc-----Ccc--ccc-CE
Q psy2685 182 QIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS-EVIVSNAEDKSIRLWDMTKRTCLNTFRRE-----QER--FWS-EV 252 (992)
Q Consensus 182 ~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~-----~~~--~~s-~~ 252 (992)
. ......-.....++|+|++ .+.++-+..+.|.++++........+... ... +.. .+
T Consensus 532 -------------~-~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~l 597 (699)
T 1n7d_A 532 -------------Y-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 597 (699)
T ss_dssp -------------C-EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEE
T ss_pred -------------e-EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEE
Confidence 0 0111112345678999875 45556566788999998653322222111 111 112 44
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeec
Q psy2685 253 IVSNAEDKSIRLWDMTKRTCLNTFRR 278 (992)
Q Consensus 253 l~sgs~Dg~I~vwd~~t~~~v~~l~~ 278 (992)
+++....+.|..++..+++.+..+..
T Consensus 598 ywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEeCCCCeEEEEEccCCCceEEeec
Confidence 55555677888888888877766644
No 307
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.69 E-value=0.93 Score=58.26 Aligned_cols=199 Identities=14% Similarity=0.277 Sum_probs=111.1
Q ss_pred CeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEeeccCcc-cc---cCEEEEE
Q psy2685 181 RQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQER-FW---SEVIVSN 256 (992)
Q Consensus 181 ~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~~~~-~~---s~~l~sg 256 (992)
.+|.+.|+.++... .. ..-.--++-.||..+.|+.-+ ..++.|||+.+.+.++++...... +| +...+.-
T Consensus 48 ~~vvIidl~~~~~~-~r----rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNP-IR----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 121 (1630)
T ss_pred ceEEEEECCCCCCc-cc----ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE
Confidence 46667777665431 11 111223456788888777665 689999999998888777654433 34 2333333
Q ss_pred eCCCeEEEEECCC-CeEEEEeecC----CCCEEEEEEeCCCCEEEE-E--ECCC-----EEEEEecCCcce---------
Q psy2685 257 AEDKSIRLWDMTK-RTCLNTFRRE----QERFWVLVAHPTLNLFAA-G--HDAG-----MVVFKFERERPA--------- 314 (992)
Q Consensus 257 s~Dg~I~vwd~~t-~~~v~~l~~h----~~~V~~la~spdg~~Las-g--sddg-----iivw~l~~~~~~--------- 314 (992)
-.+..|+.|++.. ..++..|..| ...|..-..+++.++++. | ..+| +-+|+.++....
T Consensus 122 VT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F 201 (1630)
T 1xi4_A 122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF 201 (1630)
T ss_pred EcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhh
Confidence 4466799999964 2344445444 345667777888887663 2 1222 225555544321
Q ss_pred --EEe----eccEEEEE-----eCCeEEEEEeeCC-CceEEE-------Eeec-CCCccceeEEEccCCCEEEEEecCCc
Q psy2685 315 --YTV----HNNVMYYV-----KERFLHRLDLTNS-KDSVVM-------QLRG-GGRIPAHSISYNATEHSILVTTRNAN 374 (992)
Q Consensus 315 --~~~----~~~~v~~~-----~~~~i~i~dl~~~-~~~~v~-------~l~~-~~~~~I~~lafspdg~~lav~~~~~~ 374 (992)
+.. ....+++. .+..+++.++... ...+.+ .++. ....-+.++..|+.-..+-+.+..
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~-- 279 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY-- 279 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC--
Confidence 011 11233332 2367888888543 111111 1111 112234466777766666655554
Q ss_pred cccCCeEEEEEeCCCcc
Q psy2685 375 NFENSTYDLYMIPKEES 391 (992)
Q Consensus 375 ~~~~g~i~i~~l~~~~~ 391 (992)
|.+.+|++.....
T Consensus 280 ----G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 280 ----GYIHLYDLETGTC 292 (1630)
T ss_pred ----ceEEEEecccchh
Confidence 8899999887654
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.68 E-value=1.2 Score=50.11 Aligned_cols=232 Identities=8% Similarity=0.112 Sum_probs=143.3
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEE
Q psy2685 30 NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL 109 (992)
Q Consensus 30 dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~ 109 (992)
+..|.|.|+.++..+.+..-. --+.-.||..+.++.=. ..+++|+|+++...+..+.-.. +|.-=.|-.+. .|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEE
Confidence 347888888775443322111 12334688888777654 6799999999999888876544 45555665443 344
Q ss_pred EEECCCeEEEEECCC-CeeEEEEecC----CCCeEEEEEecCCCEEEEEEC---CCeEEEEECCCCccccccCCcccCCC
Q psy2685 110 SASDDQTIRIWNWQS-RNCICVLTGH----NHYVMCAQFHPTDDIVVSASL---DQTIRVWDISGLRKKNVAPGMGADDR 181 (992)
Q Consensus 110 sgs~Dg~I~vwdl~t-~~~i~~l~~h----~~~V~sl~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~d~ 181 (992)
..+ +..|.-|++.. ..+...+..| ...|..-..+++.+|++..+- +|.|. |
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~--------------------G 179 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV--------------------G 179 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE--------------------E
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc--------------------c
Confidence 443 45799999974 3566666655 356888888999999886552 33221 6
Q ss_pred eEEEEEccCCcceEEEEEeccCCCeEEEEEcCCC---CEEEEEeC---CCeEEEEECCCC---ee-----eeEeeccCcc
Q psy2685 182 QIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKS---EVIVSNAE---DKSIRLWDMTKR---TC-----LNTFRREQER 247 (992)
Q Consensus 182 ~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg---~~L~s~s~---Dg~I~vwdl~~~---~~-----l~~~~~~~~~ 247 (992)
.+.+|..+... ...+.||......+....+. .+++.+.. .+.+.|.++... .+ ...+..+.+.
T Consensus 180 ~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~ 256 (494)
T 1bpo_A 180 AMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (494)
T ss_dssp EEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred eEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence 66777666543 35567776665555443221 23444433 268888888532 11 1111111111
Q ss_pred cc-----------cCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCEEEEEEeCC
Q psy2685 248 FW-----------SEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPT 291 (992)
Q Consensus 248 ~~-----------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~~h~~~V~~la~spd 291 (992)
.. -..+...+.-|.++++|+.++.++..-+-..+.|-..+-+..
T Consensus 257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~ 311 (494)
T 1bpo_A 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 311 (494)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCC
Confidence 00 167888899999999999999999887766666655444443
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.60 E-value=0.69 Score=51.21 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=79.8
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec-------cCCCCEEEEEEecC---CCEEEEEE-C-------
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD-------EHEGPVRGICFHNQ---QPIFVSGG-D------- 71 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~-------~h~~~V~~l~fspd---g~~Lasgs-~------- 71 (992)
.....|+|.|+|+.|+++...|.|++++. ++.....+. ...+....|+|+|+ +..|..+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45789999999984445567899999984 454322111 12345789999996 44554443 2
Q ss_pred CCeEEEEEcCCC--e--EEEE-Ecc------CCCCEEEEEEecCCCEEEEEECC-------------CeEEEEECCCCe-
Q psy2685 72 DYKIKVWNYKQR--K--CIFT-LLG------HLDYIRTTFFHHEYPWILSASDD-------------QTIRIWNWQSRN- 126 (992)
Q Consensus 72 Dg~I~VWd~~t~--~--~~~~-l~~------h~~~V~~i~fspd~~~L~sgs~D-------------g~I~vwdl~t~~- 126 (992)
...|..+++..+ . .... +.. .......+.|.|+|.+.++.++. |.|.-+|.+..-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666666433 1 1111 111 11123579999999665554442 467777765320
Q ss_pred -----------eEEEE-ecCCCCeEEEEEec-CCCEEEE
Q psy2685 127 -----------CICVL-TGHNHYVMCAQFHP-TDDIVVS 152 (992)
Q Consensus 127 -----------~i~~l-~~h~~~V~sl~fsp-dg~~L~s 152 (992)
....+ .+| .....++|+| ++.++++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 11111 233 3467899999 4544433
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.55 E-value=0.084 Score=56.75 Aligned_cols=193 Identities=9% Similarity=0.024 Sum_probs=94.1
Q ss_pred CCCEEEEEE-cC-----CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC-----CeEEEEEcCCCe---E
Q psy2685 20 KRPWILSSL-HN-----GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD-----YKIKVWNYKQRK---C 85 (992)
Q Consensus 20 dg~~Lasg~-~d-----g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~VWd~~t~~---~ 85 (992)
++..++.|+ .+ ..+.+||..+++....-..........+...++..++.|+.+ ..+.+||..+++ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 455667776 33 468899988776443211111111111122356677777754 468899987765 3
Q ss_pred EEE--EccCCCCEEEEEEecCCCEEEEEECC-----CeEEEEECCCCeeEEEEecC--CCCeEEEEEecCCCEEEEEECC
Q psy2685 86 IFT--LLGHLDYIRTTFFHHEYPWILSASDD-----QTIRIWNWQSRNCICVLTGH--NHYVMCAQFHPTDDIVVSASLD 156 (992)
Q Consensus 86 ~~~--l~~h~~~V~~i~fspd~~~L~sgs~D-----g~I~vwdl~t~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs~D 156 (992)
... +.........+. .++..++.|+.+ ..+.+||..+.+-...-... ...-.++.+ ++.+++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred EECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 322 111111111222 256677777654 36888998876533321111 111112222 45566666544
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEE
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED-----KSIRLWD 231 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~vwd 231 (992)
+.- ....+..||..+.....+..+........++.+ ++.+++.|+.+ ..+.+||
T Consensus 170 ~~~-------------------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 170 GLN-------------------ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp SSC-------------------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred CCc-------------------ccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEe
Confidence 310 014455555554432122111111111222222 56777777764 4688999
Q ss_pred CCCCee
Q psy2685 232 MTKRTC 237 (992)
Q Consensus 232 l~~~~~ 237 (992)
+.+.+-
T Consensus 229 ~~~~~W 234 (301)
T 2vpj_A 229 IRTDSW 234 (301)
T ss_dssp TTTTEE
T ss_pred CCCCcE
Confidence 987653
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.55 E-value=1.5 Score=49.43 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=133.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEccC
Q psy2685 14 GLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQ-RKCIFTLLGH 92 (992)
Q Consensus 14 ~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h 92 (992)
+.-.||..+.+|.=. ..+++|+|+++.+.+..+.- ..+|.--.|-.+. .|+..+ +..|.-|++.. ..+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 445788888777765 78999999999998888764 4466667776554 444443 45899999864 3566666555
Q ss_pred C----CCEEEEEEecCCCEEEEEE-------CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCC---CEEEEEECC--
Q psy2685 93 L----DYIRTTFFHHEYPWILSAS-------DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTD---DIVVSASLD-- 156 (992)
Q Consensus 93 ~----~~V~~i~fspd~~~L~sgs-------~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~D-- 156 (992)
. ..|..-..+++.+|++..| -.|.+.+|+.+ ++..+.+.||......+....+. ..++.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 4577777788999887543 24788899975 45567788886655443332111 244444443
Q ss_pred -CeEEEEECCCCc-cccccCCcccCCCeEEEEEccCCcceEEEEEe---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy2685 157 -QTIRVWDISGLR-KKNVAPGMGADDRQIKLWRMNDSKAWEVDIFR---GHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231 (992)
Q Consensus 157 -g~I~iwd~~~~~-~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~---~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwd 231 (992)
+.+++-++.... .... -. + .....+. ...+-..++..++....+..-+.-|.+.+||
T Consensus 225 g~kLhi~Ei~~~~~~~~~--------f~---------k-k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyD 286 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQP--------FP---------K-KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYD 286 (494)
T ss_dssp CCEEEEEECSCCCTTCCC--------CC---------C-EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred CcEEEEEEcCCCccCCCC--------cc---------c-eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEe
Confidence 566666664321 0000 00 0 0111111 1244567889999888999999999999999
Q ss_pred CCCCeeeeEeec
Q psy2685 232 MTKRTCLNTFRR 243 (992)
Q Consensus 232 l~~~~~l~~~~~ 243 (992)
+.++.++..-+.
T Consensus 287 leTgt~i~~nrI 298 (494)
T 1bpo_A 287 LETGTCIYMNRI 298 (494)
T ss_dssp TTTCCEEEEEEC
T ss_pred cccceeeeeecc
Confidence 999998876553
No 312
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.23 Score=57.56 Aligned_cols=218 Identities=11% Similarity=0.178 Sum_probs=114.7
Q ss_pred CEEEEEE-------cCCCCEEEEEEcCC-------eEEEEEcCC-CeEE-----EEeccCCCCEEEEEEecC-CCEEEEE
Q psy2685 11 RVKGLSF-------HPKRPWILSSLHNG-------VIQLWDYRM-NTLL-----EKFDEHEGPVRGICFHNQ-QPIFVSG 69 (992)
Q Consensus 11 ~V~~iaf-------spdg~~Lasg~~dg-------~I~IWd~~~-g~~~-----~~~~~h~~~V~~l~fspd-g~~Lasg 69 (992)
+...++| ++++.+|+++...+ .|.+++... |... ..+.... ...+++.+|+ +.++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEE
Confidence 5899999 99999777776554 266665333 2211 1221111 2357788995 5555566
Q ss_pred ECCCeEEEEEcC-------CCeE-----------EEE-E-ccCCCCEEEEEEecCCCEEEEE-ECCCeEEEEECC--CCe
Q psy2685 70 GDDYKIKVWNYK-------QRKC-----------IFT-L-LGHLDYIRTTFFHHEYPWILSA-SDDQTIRIWNWQ--SRN 126 (992)
Q Consensus 70 s~Dg~I~VWd~~-------t~~~-----------~~~-l-~~h~~~V~~i~fspd~~~L~sg-s~Dg~I~vwdl~--t~~ 126 (992)
..++.|..+|+. ++.. ... + .+.......++|+|+++.|..+ +....|+.++.. ++.
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 678899999987 5543 112 1 1223456899999999965444 566788886653 332
Q ss_pred e--EEEEecC---C------------CCeE-EEEEe-------cCCCEEEEEECCCeEEEEECCCCccccccCCcccC--
Q psy2685 127 C--ICVLTGH---N------------HYVM-CAQFH-------PTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGAD-- 179 (992)
Q Consensus 127 ~--i~~l~~h---~------------~~V~-sl~fs-------pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-- 179 (992)
. ..++.+. . .... .++.. +++.++++=+.++.|+.++..+ .... ..+.+..
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~T-iaG~g~~~~ 423 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVST-YAGRGASTS 423 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEE-EEESCTTHH
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEE-Eeccccccc
Confidence 2 1233221 1 1233 33343 3445555555566666666432 1000 0000000
Q ss_pred --CCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee
Q psy2685 180 --DRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPK-SEVIVSNAEDKSIRLWDMTKRTC 237 (992)
Q Consensus 180 --d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~vwdl~~~~~ 237 (992)
++ .-|-..++. ......-.....++++++ |.++++-+....|+.+++....+
T Consensus 424 ~~~~--~~~G~~dG~----~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 424 LADG--NQWGTDDGD----LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HHHS--CSCCCCCEE----TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ccCc--cccccCCCC----chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 00 000000000 000011234678899986 77777777788898888765443
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.28 E-value=0.42 Score=51.29 Aligned_cols=104 Identities=8% Similarity=-0.015 Sum_probs=57.8
Q ss_pred CEEEEEEc--CCeEEEEEcCCCeEEEE--eccCCCCEEEEEEecCCCEEEEEECC----CeEEEEEcCCCeEEEEEccCC
Q psy2685 22 PWILSSLH--NGVIQLWDYRMNTLLEK--FDEHEGPVRGICFHNQQPIFVSGGDD----YKIKVWNYKQRKCIFTLLGHL 93 (992)
Q Consensus 22 ~~Lasg~~--dg~I~IWd~~~g~~~~~--~~~h~~~V~~l~fspdg~~Lasgs~D----g~I~VWd~~t~~~~~~l~~h~ 93 (992)
..++.|+. ...+.+||..+++.... +......-..+. -++..++.|+.+ ..+.++|..+++....-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 35789999888765432 111111112222 356677777754 678899998876543322111
Q ss_pred CCEEEEEEecCCCEEEEEECC------CeEEEEECCCCee
Q psy2685 94 DYIRTTFFHHEYPWILSASDD------QTIRIWNWQSRNC 127 (992)
Q Consensus 94 ~~V~~i~fspd~~~L~sgs~D------g~I~vwdl~t~~~ 127 (992)
......+..-++..++.|+.+ ..+.+||..+.+-
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 111111112256677777765 4688999887653
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.06 E-value=0.26 Score=52.89 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCEEEEEEcC----CeEEEEEcCCCeEEEEeccCCCCE-EEEEEecCCCEEEEEECC-----CeEEEEEcCCCeEEEEEc
Q psy2685 21 RPWILSSLHN----GVIQLWDYRMNTLLEKFDEHEGPV-RGICFHNQQPIFVSGGDD-----YKIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 21 g~~Lasg~~d----g~I~IWd~~~g~~~~~~~~h~~~V-~~l~fspdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~ 90 (992)
+..++.|+.+ ..+..||..+++....-....... .+++. -++..++.|+.+ ..+.+||..+++....-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 4566666653 468899988776443211111111 11222 256677777754 358889988876443221
Q ss_pred cC--CCCEEEEEEecCCCEEEEEECCC-----eEEEEECCCCee
Q psy2685 91 GH--LDYIRTTFFHHEYPWILSASDDQ-----TIRIWNWQSRNC 127 (992)
Q Consensus 91 ~h--~~~V~~i~fspd~~~L~sgs~Dg-----~I~vwdl~t~~~ 127 (992)
.. ..... ++. -++..++.|+.++ .+.+||+.+.+-
T Consensus 95 ~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 95 MRDRRSTLG-AAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp CSSCCBSCE-EEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCccccceE-EEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 11 11111 222 2566777777553 577888877653
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.04 E-value=5.8 Score=51.04 Aligned_cols=386 Identities=8% Similarity=-0.001 Sum_probs=186.7
Q ss_pred CCCCEEEEEEc---------CCeEEEEEcCCCeEEEEeccCC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q psy2685 19 PKRPWILSSLH---------NGVIQLWDYRMNTLLEKFDEHE-GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFT 88 (992)
Q Consensus 19 pdg~~Lasg~~---------dg~I~IWd~~~g~~~~~~~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~ 88 (992)
.+.+.|+++.- ...|++.+...+..+..+.... ..|...+.+ ++.++.++ ++.+.++.+..++....
T Consensus 471 ~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~ 547 (1158)
T 3ei3_A 471 DDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQI 547 (1158)
T ss_dssp SSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeee
Confidence 35556666542 2235666655555666665433 356655544 34666665 67888888776643321
Q ss_pred E-ccCCCCEEEEEEecC------CCEEEEEEC-CCeEEEEECCCCeeEEEEecC-CCCeEEEEEec--CCCEEEEEECCC
Q psy2685 89 L-LGHLDYIRTTFFHHE------YPWILSASD-DQTIRIWNWQSRNCICVLTGH-NHYVMCAQFHP--TDDIVVSASLDQ 157 (992)
Q Consensus 89 l-~~h~~~V~~i~fspd------~~~L~sgs~-Dg~I~vwdl~t~~~i~~l~~h-~~~V~sl~fsp--dg~~L~sgs~Dg 157 (992)
. ..-.+.|.|+++.|. ++++++|.. |++++|+++.+.+.+....-. .....++.+.. ...++..|-.||
T Consensus 548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG 627 (1158)
T 3ei3_A 548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG 627 (1158)
T ss_dssp EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTS
T ss_pred cccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCC
Confidence 1 223568999999763 368999997 999999999887666543321 22344444432 336788999999
Q ss_pred eEEEEECCCCccccccCCcccCCCeEEE---EEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy2685 158 TIRVWDISGLRKKNVAPGMGADDRQIKL---WRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTK 234 (992)
Q Consensus 158 ~I~iwd~~~~~~~~~~~~~~~~d~~I~i---wd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~ 234 (992)
.+..+.+.... +.+.- .-+.+ +......+.... . .++-...+..+++..+ ++.+.+-.+.-
T Consensus 628 ~l~~~~~d~~t------------g~l~d~r~~~LG~-~pv~L~~~~~~~-~-~~V~a~s~rp~liy~~-~~~l~~s~l~~ 691 (1158)
T 3ei3_A 628 ALFYFGLNIET------------GLLSDRKKVTLGT-QPTVLRTFRSLS-T-TNVFACSDRPTVIYSS-NHKLVFSNVNL 691 (1158)
T ss_dssp EEEEEEECTTT------------CCEEEEEEEECCS-SCCEEEEEESSS-C-EEEEEESSSCEEEEES-SSSEEEEEBSS
T ss_pred eEEEEEEcCCC------------CccccceeEEcCC-CceEEEEEeeCC-c-eeEEEECCCCEEEEEc-CCceEEeccCh
Confidence 98776654311 11110 01111 111222222221 1 1222222333333322 23333222221
Q ss_pred Ce--eeeEeeccCcccccCEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCEEEEEEeCCCCEEEEEECCCEEEEEecC
Q psy2685 235 RT--CLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKRT--CLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFER 310 (992)
Q Consensus 235 ~~--~l~~~~~~~~~~~s~~l~sgs~Dg~I~vwd~~t~~--~v~~l~~h~~~V~~la~spdg~~Lasgsddgiivw~l~~ 310 (992)
.. ....|.. .....-++..+ ++.+++..+.+.. .+.++. -...+..++++|+.+.++.+..+.- .++...
T Consensus 692 ~~v~~~~~F~s---e~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~-~~~~~~ 765 (1158)
T 3ei3_A 692 KEVNYMCPLNS---DGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIE-VQDTSG 765 (1158)
T ss_dssp SCCCEEEEECC---SSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEE-EECSSS
T ss_pred HHhceEeccCc---ccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEecc-cccccc
Confidence 11 1111211 11123444333 4558888765432 233333 2356789999999887766543211 111110
Q ss_pred C-cce----------EEee-c----------cEE--EEEeCCeEEEEEeeCCCceEEEEeecC-CCccceeEEEccC-CC
Q psy2685 311 E-RPA----------YTVH-N----------NVM--YYVKERFLHRLDLTNSKDSVVMQLRGG-GRIPAHSISYNAT-EH 364 (992)
Q Consensus 311 ~-~~~----------~~~~-~----------~~v--~~~~~~~i~i~dl~~~~~~~v~~l~~~-~~~~I~~lafspd-g~ 364 (992)
+ .+. -... + ..- .-.....+++.|-.+.+....+.+... .-..+..+.|..+ ..
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~ 845 (1158)
T 3ei3_A 766 GTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 845 (1158)
T ss_dssp SEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCC
T ss_pred ccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCE
Confidence 0 000 0000 0 000 001124466666555554444444311 1112233344433 46
Q ss_pred EEEEEecCCc----cccCCeEEEEEeCCCccccceeccCccccceEEEEecCCeEEEEEcCCeEEEEEcCCc
Q psy2685 365 SILVTTRNAN----NFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNE 432 (992)
Q Consensus 365 ~lav~~~~~~----~~~~g~i~i~~l~~~~~~~~~~~~~~~~~~~s~~w~~~~~~av~~~~g~I~i~dl~~~ 432 (992)
++++++.-.. ....|.+.+|.+.+... ........++.+....- -.++++++- .+++.+|++..+
T Consensus 846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv~~~~v~g~v~al~~-~~g~Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTVAEKEVKGAVYSMVE-FNGKLLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEEEEEEESSCEEEEEE-ETTEEEEEE-TTEEEEEEECTT
T ss_pred EEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEEEEEEcCCcCEEEee-eCCEEEEEc-CCEEEEEECCCC
Confidence 8888875311 12568899998863211 11111222344443322 256666554 678999988654
No 316
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.98 E-value=0.32 Score=47.87 Aligned_cols=175 Identities=16% Similarity=0.016 Sum_probs=102.9
Q ss_pred eeccCCHHHHHH---HHHhcC--ChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCH-HHHHHHHHHHHH
Q psy2685 472 ALECGNIDIALE---AARVLE--DKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNL-EKLKKMMKIAEI 545 (992)
Q Consensus 472 aL~~g~ldeA~~---~a~~i~--~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~-ek~~~la~ia~i 545 (992)
++..|++++|.+ .+.... ....|..+|......|+++.|+.+|.+.-... .-.+.. ....-...++..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQA------QKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH------HHcCCcHHHHHHHHHHHHH
Confidence 356799999999 554432 36789999999999999999999998764321 111222 223334445555
Q ss_pred HHhhchHHHHHHHHHhcCCcccccccch-hhhHHHHHHHHHHHhccchHH----HHHHHHHHHHhcchh-------hHHH
Q psy2685 546 RRDISGQYQAALLLGRMGRGFFLLHYFS-FFFFAFLRLAFLYLITGNLEK----LKKMMKIAEIRRDIS-------GQYQ 613 (992)
Q Consensus 546 ~~~~~~~~eaa~l~~~~g~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~r~d~~-------~~~~ 613 (992)
....+.+++|...+.+.-+........| .........-..|...++.+. +++++.+.+..++.. ....
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5666666666666665333322222122 222333333445554455444 344444444444432 2445
Q ss_pred HhhhcCCHHHHHHHHHHcCCcHHHHHHHHhcCChHHHHHHHhhcC
Q psy2685 614 AALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLR 658 (992)
Q Consensus 614 ~al~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~~~~~~~~~~~~ 658 (992)
.+..+|+.++|++.+. .|+.+++..+.......+...+.
T Consensus 156 ~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWL------RARDIFAELEDSEAVNELMTRLN 194 (203)
T ss_dssp HHHHTTCHHHHHHHHH------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHH------HHHHHHHHcCCHHHHHHHHhccc
Confidence 6677899999998865 47888899988877777766664
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.97 E-value=2.6 Score=46.46 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=62.3
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE--EEc---cCCCCEEEEEEecC---CCEEEEEEC-C-----CeE
Q psy2685 52 GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIF--TLL---GHLDYIRTTFFHHE---YPWILSASD-D-----QTI 117 (992)
Q Consensus 52 ~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l~---~h~~~V~~i~fspd---~~~L~sgs~-D-----g~I 117 (992)
..-.+++|.|+|.+++ +..+|.|.+++ +++... .+. ........++|+|+ +..|.++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3467999999998554 56679999998 454221 111 12356899999998 555554433 2 678
Q ss_pred EEEECCCCe-----eEE-EEe---cCCCCeEEEEEecCCCEEEEEE
Q psy2685 118 RIWNWQSRN-----CIC-VLT---GHNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 118 ~vwdl~t~~-----~i~-~l~---~h~~~V~sl~fspdg~~L~sgs 154 (992)
..++...+. .+. .+. +..+....++|.|+|.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 888876431 121 133 1123346889999997666543
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.88 E-value=0.9 Score=50.30 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=111.6
Q ss_pred EEEEEEcCCCCEEEEE------------EcCCeEEEEEcCC--CeEE-EEecc-----CCCCEEEEEEec--CCC-EEEE
Q psy2685 12 VKGLSFHPKRPWILSS------------LHNGVIQLWDYRM--NTLL-EKFDE-----HEGPVRGICFHN--QQP-IFVS 68 (992)
Q Consensus 12 V~~iafspdg~~Lasg------------~~dg~I~IWd~~~--g~~~-~~~~~-----h~~~V~~l~fsp--dg~-~Las 68 (992)
.-.+...|+|..++++ ..+|.|.++|..+ ++.. -.+.+ ......++.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4466678877544444 1689999999873 3221 12222 234778888877 454 4544
Q ss_pred EEC---CCeEEEEEcCCC--e--EEEEEccC-CCCEEEEEEecCCCEEEEEE-----------------CCCeEEEEECC
Q psy2685 69 GGD---DYKIKVWNYKQR--K--CIFTLLGH-LDYIRTTFFHHEYPWILSAS-----------------DDQTIRIWNWQ 123 (992)
Q Consensus 69 gs~---Dg~I~VWd~~t~--~--~~~~l~~h-~~~V~~i~fspd~~~L~sgs-----------------~Dg~I~vwdl~ 123 (992)
+.. +++|.+|++..+ . .+..+.+. -...+.+.+.++|.+.++.. ..|.|.-+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 433 468888877543 2 22333332 24578999999998766653 1244555554
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCEEEEEE-CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEecc
Q psy2685 124 SRNCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGH 202 (992)
Q Consensus 124 t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h 202 (992)
++. ..+...-.....++|+||++.+..+. ..+.|..|++... +.+. ....+ ..
T Consensus 211 -~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-------------g~l~----------~~~~~-~~ 264 (355)
T 3sre_A 211 -NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-------------WTLT----------PLRVL-SF 264 (355)
T ss_dssp -TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-------------SCEE----------EEEEE-EC
T ss_pred -CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-------------CcEe----------cCEEE-eC
Confidence 332 23333345678999999998776665 5678888887532 1110 11112 12
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCC-CeEEEEE
Q psy2685 203 YNNVSCVLFHP-KSEVIVSNAED-KSIRLWD 231 (992)
Q Consensus 203 ~~~V~~v~fsp-dg~~L~s~s~D-g~I~vwd 231 (992)
.+..-.++..+ +|++.+++..+ +.|..|+
T Consensus 265 ~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 265 DTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp SSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred CCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 34566788888 58877766544 3444444
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.75 E-value=0.2 Score=53.88 Aligned_cols=107 Identities=6% Similarity=0.018 Sum_probs=58.4
Q ss_pred CCCEEEEEEcC----CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC------CeEEEEEcCCCeEEEEE
Q psy2685 20 KRPWILSSLHN----GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD------YKIKVWNYKQRKCIFTL 89 (992)
Q Consensus 20 dg~~Lasg~~d----g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D------g~I~VWd~~t~~~~~~l 89 (992)
++..++.|+.+ ..+.+||..+++....-..........+..-++..++.|+.+ ..+.+||..+++....-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 45666777654 678899988876543322111111111112266677777765 46889998887654321
Q ss_pred ccCCCC-EEEEEEecCCCEEEEEEC---------CCeEEEEECCCCee
Q psy2685 90 LGHLDY-IRTTFFHHEYPWILSASD---------DQTIRIWNWQSRNC 127 (992)
Q Consensus 90 ~~h~~~-V~~i~fspd~~~L~sgs~---------Dg~I~vwdl~t~~~ 127 (992)
...... -.+++. -++..++.|+. -..+.+||+.+.+-
T Consensus 135 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 135 SMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred CCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 111111 111222 25566666653 34588999987653
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.60 E-value=0.19 Score=53.93 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=57.8
Q ss_pred CCCEEEEEEcC-----CeEEEEEcCCCe---EEEE--eccCCCCEEEEEEecCCCEEEEEECC-----CeEEEEEcCCCe
Q psy2685 20 KRPWILSSLHN-----GVIQLWDYRMNT---LLEK--FDEHEGPVRGICFHNQQPIFVSGGDD-----YKIKVWNYKQRK 84 (992)
Q Consensus 20 dg~~Lasg~~d-----g~I~IWd~~~g~---~~~~--~~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~VWd~~t~~ 84 (992)
++..++.|+.+ ..+.+||..+++ .... +......-..+. .++..++.|+.+ ..+.++|..+++
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45666777654 468899987765 3322 221111112222 256677777654 368889988876
Q ss_pred EEEEEccCCCCEEEEEEecCCCEEEEEECC-----CeEEEEECCCCee
Q psy2685 85 CIFTLLGHLDYIRTTFFHHEYPWILSASDD-----QTIRIWNWQSRNC 127 (992)
Q Consensus 85 ~~~~l~~h~~~V~~i~fspd~~~L~sgs~D-----g~I~vwdl~t~~~ 127 (992)
....-..........+..-++..++.|+.+ ..+.+||+.+.+-
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 543321111111111112256677777654 4588999887654
No 321
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.55 E-value=2.9 Score=45.87 Aligned_cols=192 Identities=11% Similarity=0.199 Sum_probs=116.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeEEEEEccCCCCEEEEEEecCC----C---EEEEEE-C--CCeEEEEEC--CCCeeEE
Q psy2685 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEY----P---WILSAS-D--DQTIRIWNW--QSRNCIC 129 (992)
Q Consensus 62 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~----~---~L~sgs-~--Dg~I~vwdl--~t~~~i~ 129 (992)
...+++.....+-+.++|+ +|+.+..+.. +.+..+..-|+- . ++++.. . +++|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3446666677889999999 8888887753 567777776632 2 223333 3 578999976 3443 44
Q ss_pred EEec------CC-CCeEEEEE--ecCC-C-EEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEE
Q psy2685 130 VLTG------HN-HYVMCAQF--HPTD-D-IVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDI 198 (992)
Q Consensus 130 ~l~~------h~-~~V~sl~f--spdg-~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~ 198 (992)
.+.. .. ..+..+++ +|.+ . ++++...+|.+..|++..... +.+. ...+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~-----------g~~~--------~~lVR~ 175 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN-----------GYIS--------GKKVRA 175 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT-----------SCEE--------EEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC-----------Cccc--------ceEEEE
Confidence 4421 11 45666777 6644 3 677888889888888742110 1110 012333
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCeeeeEeeccC-----cc--cc-c----CEEEEEe-CCC
Q psy2685 199 FRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMT-----KRTCLNTFRREQ-----ER--FW-S----EVIVSNA-EDK 260 (992)
Q Consensus 199 l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~-----~~~~l~~~~~~~-----~~--~~-s----~~l~sgs-~Dg 260 (992)
+.. .+.+..+...+....|..+-++.-|..++.. +++.+..+.... .. ++ . .++++++ .++
T Consensus 176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 332 3467788888888899999999777777754 234444432110 00 11 1 2455544 678
Q ss_pred eEEEEECC-CCeEEEEee
Q psy2685 261 SIRLWDMT-KRTCLNTFR 277 (992)
Q Consensus 261 ~I~vwd~~-t~~~v~~l~ 277 (992)
+..+||.. +.+.+..|+
T Consensus 255 s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 255 SYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEESSTTCCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEE
Confidence 99999986 566666664
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.45 E-value=0.7 Score=51.98 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=95.3
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccC----CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe--------
Q psy2685 17 FHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEH----EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK-------- 84 (992)
Q Consensus 17 fspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h----~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~-------- 84 (992)
...+|..++++- ++.|+.-++..+...+.+... -..|..+..+|+|++||..+.. .|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence 344666666663 677887787644434444322 2367889999999999987654 78888776221
Q ss_pred ----EEEEEcc------CCCCEEEEEEecC---CCEEEEEECCCeEEEEECCCC--eeEEEEe---------cCCCCeEE
Q psy2685 85 ----CIFTLLG------HLDYIRTTFFHHE---YPWILSASDDQTIRIWNWQSR--NCICVLT---------GHNHYVMC 140 (992)
Q Consensus 85 ----~~~~l~~------h~~~V~~i~fspd---~~~L~sgs~Dg~I~vwdl~t~--~~i~~l~---------~h~~~V~s 140 (992)
....+.- ...+|..+.|||- +..|++-..|+.|++||+... ++. .+. .....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1122321 2577999999995 568999999999999999752 222 332 22356889
Q ss_pred EEEecCCCEEEEEE--CCCeEEEEE
Q psy2685 141 AQFHPTDDIVVSAS--LDQTIRVWD 163 (992)
Q Consensus 141 l~fspdg~~L~sgs--~Dg~I~iwd 163 (992)
++|.+++-.|...+ ..|.|+-.-
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEcCCCcEEEEEecCCCCCEEEEC
Confidence 99998775555544 777776543
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.41 E-value=4.1 Score=44.88 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe-EEEEEc---cCCCCEEEEEEecC---CCEEEEEEC----C----C
Q psy2685 51 EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK-CIFTLL---GHLDYIRTTFFHHE---YPWILSASD----D----Q 115 (992)
Q Consensus 51 ~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~---~h~~~V~~i~fspd---~~~L~sgs~----D----g 115 (992)
-..-.+|+|.|+|. |+++..+|.|.++| .+++ .+..+. ........|+++|+ +..|.++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34568999999997 55556679999997 4555 222111 12356889999997 455554433 3 5
Q ss_pred eEEEEECCCC-------eeE-EEEe-cCCCCeEEEEEecCCCEEEEEE
Q psy2685 116 TIRIWNWQSR-------NCI-CVLT-GHNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 116 ~I~vwdl~t~-------~~i-~~l~-~h~~~V~sl~fspdg~~L~sgs 154 (992)
.|..|+.... +.+ ..+. ...+....+.|.|||.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 6778887644 111 1122 1123346789999998666644
No 324
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.29 E-value=0.08 Score=60.27 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=98.1
Q ss_pred eccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchH
Q psy2685 473 LECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQ 552 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~ 552 (992)
..+|++++|.+++++..++..|+.+...|+..|+++.|++|+.++. ...+.+.. +.......+.+
T Consensus 159 ~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------------~~ad~l~~---lv~~Yek~G~~ 223 (449)
T 1b89_A 159 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------------VHADELEE---LINYYQDRGYF 223 (449)
T ss_dssp HTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------------TCHHHHHH---HHHHHHHTTCH
T ss_pred HHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHH------------hCHhhHHH---HHHHHHHCCCH
Confidence 7889999999999999999999999999999999999988887633 22333222 33334566777
Q ss_pred HHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHHHHHHHcC
Q psy2685 553 YQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCG 632 (992)
Q Consensus 553 ~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~i~~~~~ 632 (992)
+++..++++.-.... -+--+|+.. ....-+=+++++...++++..| =++.+-+..|.+..
T Consensus 224 eEai~lLe~aL~le~---ah~~~ftel----~il~~ky~p~k~~ehl~~~~~~-------------ini~k~~~~~~~~~ 283 (449)
T 1b89_A 224 EELITMLEAALGLER---AHMGMFTEL----AILYSKFKPQKMREHLELFWSR-------------VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHTTSTT---CCHHHHHHH----HHHHHTTCHHHHHHHHHHHSTT-------------SCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCcH---HHHHHHHHH----HHHHHhcCHHHHHHHHHHHHHH-------------hcCcHHHHHHHHHH
Confidence 888777776332221 111222222 2222333566655555555333 35667778888888
Q ss_pred CcHHHHHHHHhcCChHHHHHHH
Q psy2685 633 QTSLAYLTAATHGLSEEAAELE 654 (992)
Q Consensus 633 ~~~~A~~~A~~~~~~~~~~~~~ 654 (992)
.|.++..+--.|+-.++|...-
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 8888888888888887766533
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.20 E-value=0.4 Score=51.69 Aligned_cols=191 Identities=9% Similarity=0.035 Sum_probs=92.2
Q ss_pred CCCCEEEEEEcC----CeEEEEEcCCCeEEEEe--ccCCCCEEEEEEecCCCEEEEEEC----C-----CeEEEEEcCCC
Q psy2685 19 PKRPWILSSLHN----GVIQLWDYRMNTLLEKF--DEHEGPVRGICFHNQQPIFVSGGD----D-----YKIKVWNYKQR 83 (992)
Q Consensus 19 pdg~~Lasg~~d----g~I~IWd~~~g~~~~~~--~~h~~~V~~l~fspdg~~Lasgs~----D-----g~I~VWd~~t~ 83 (992)
-++..++.|+.+ ..+.+||..+++....- ......- +++ ..++..++.|+. + ..+.++|..++
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777742 46899998877654321 1111111 222 225666777665 2 46888898877
Q ss_pred eEEEEEc--cCCCCEEEEEEecCCCEEEEEECC-----CeEEEEECCCCeeEEEE--ecCCCCeEEEEEecCCCEEEEEE
Q psy2685 84 KCIFTLL--GHLDYIRTTFFHHEYPWILSASDD-----QTIRIWNWQSRNCICVL--TGHNHYVMCAQFHPTDDIVVSAS 154 (992)
Q Consensus 84 ~~~~~l~--~h~~~V~~i~fspd~~~L~sgs~D-----g~I~vwdl~t~~~i~~l--~~h~~~V~sl~fspdg~~L~sgs 154 (992)
+....-. ........+. -++..++.|+.+ ..+.+||..+.+-...- ......-.++.+ ++.+++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 6433211 1111111222 256666776643 45888998776532211 111111122222 455566665
Q ss_pred CCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q psy2685 155 LDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAED-----KSIRL 229 (992)
Q Consensus 155 ~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~v 229 (992)
.++.- ....+..||..+.....+..+........++.+ ++.+++.|+.+ ..+.+
T Consensus 177 ~~~~~-------------------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 235 (308)
T 1zgk_A 177 FDGTN-------------------RLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVER 235 (308)
T ss_dssp BCSSC-------------------BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEE
T ss_pred CCCCC-------------------cCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEE
Confidence 44210 013444555444332111111111111222333 56777777664 56899
Q ss_pred EECCCCe
Q psy2685 230 WDMTKRT 236 (992)
Q Consensus 230 wdl~~~~ 236 (992)
||+.+.+
T Consensus 236 yd~~~~~ 242 (308)
T 1zgk_A 236 YDVETET 242 (308)
T ss_dssp EETTTTE
T ss_pred EeCCCCc
Confidence 9988764
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.16 E-value=0.33 Score=52.11 Aligned_cols=104 Identities=10% Similarity=0.021 Sum_probs=56.3
Q ss_pred CCCEEEEEEcC-----CeEEEEEcCCCeEEEEeccCC--CCEEEEEEecCCCEEEEEECCC-----eEEEEEcCCCeEEE
Q psy2685 20 KRPWILSSLHN-----GVIQLWDYRMNTLLEKFDEHE--GPVRGICFHNQQPIFVSGGDDY-----KIKVWNYKQRKCIF 87 (992)
Q Consensus 20 dg~~Lasg~~d-----g~I~IWd~~~g~~~~~~~~h~--~~V~~l~fspdg~~Lasgs~Dg-----~I~VWd~~t~~~~~ 87 (992)
++..++.|+.+ ..+.+||..+++....-.... ..-..+. -++..++.|+.++ .+.+||..+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 45666677654 358889988776443321111 1112222 2566777777653 57788888776543
Q ss_pred EEccCCCC--EEEEEEecCCCEEEEEECC-------CeEEEEECCCCee
Q psy2685 88 TLLGHLDY--IRTTFFHHEYPWILSASDD-------QTIRIWNWQSRNC 127 (992)
Q Consensus 88 ~l~~h~~~--V~~i~fspd~~~L~sgs~D-------g~I~vwdl~t~~~ 127 (992)
. .....+ -.+++. -++..++.|+.+ ..+.+||+.+.+-
T Consensus 139 ~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 139 V-APMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp E-CCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred c-CCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 2 111111 112222 255666666542 4588999887653
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.88 E-value=9.9 Score=46.33 Aligned_cols=268 Identities=9% Similarity=0.031 Sum_probs=148.7
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccC------CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEH------EGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQR 83 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h------~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~ 83 (992)
..|.++...+++...+ |+.+ -+..++..+++.. .+... ...|.++...+++..|..|.. +-+..+|..++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 4588888887777444 5544 4778887766543 22211 234889988887775555554 45778888777
Q ss_pred eEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec-------CCCCeEEEEEecCCCEEEEEECC
Q psy2685 84 KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTG-------HNHYVMCAQFHPTDDIVVSASLD 156 (992)
Q Consensus 84 ~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~-------h~~~V~sl~fspdg~~L~sgs~D 156 (992)
+...........|.++...+++. |..|+.+ -+.+++..+++....... ....|.++....+|. |-.|+..
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~ 298 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDY 298 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESS
T ss_pred eEEeccCCCCCeEEEEEEcCCCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCC
Confidence 54332111234588888777776 4455654 588888776543322110 124588888877776 4455556
Q ss_pred CeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy2685 157 QTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRT 236 (992)
Q Consensus 157 g~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~ 236 (992)
| +.++.... ....+...... -......|.++.-.++|.+-+ |+.+| +..++..++.
T Consensus 299 G-l~~~~~~~---------------~~~~~~~~~~~------~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~ 354 (758)
T 3ott_A 299 G-ISLSRYNS---------------ALQFIPISQIT------GTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGE 354 (758)
T ss_dssp S-EEEECCCC----------------CEEEEHHHHS------CSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSS
T ss_pred c-ccccccCC---------------ceeEEecccCC------CCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccc
Confidence 6 44433211 11111110000 001224588888887877554 45554 5566655432
Q ss_pred --eeeEeeccC-------cccc------cCEEEEEeCCCeEEEEECCCCeEEEEe-ec-----CCCCEEEEEEeCCCCEE
Q psy2685 237 --CLNTFRREQ-------ERFW------SEVIVSNAEDKSIRLWDMTKRTCLNTF-RR-----EQERFWVLVAHPTLNLF 295 (992)
Q Consensus 237 --~l~~~~~~~-------~~~~------s~~l~sgs~Dg~I~vwd~~t~~~v~~l-~~-----h~~~V~~la~spdg~~L 295 (992)
....+.... ..+. ...+..|+ ++-+..+|..+++...-. .. ....|.++...++|++.
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW 433 (758)
T 3ott_A 355 RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW 433 (758)
T ss_dssp CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE
T ss_pred cceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE
Confidence 111222100 0111 13455566 457888998887643221 11 23458888888888776
Q ss_pred EEEECCCEEEEEec
Q psy2685 296 AAGHDAGMVVFKFE 309 (992)
Q Consensus 296 asgsddgiivw~l~ 309 (992)
+....+|+.+++..
T Consensus 434 igT~~~Gl~~~~~~ 447 (758)
T 3ott_A 434 ISTCLGGIFVVDKH 447 (758)
T ss_dssp EEESSSCEEEEEHH
T ss_pred EEECCCceEEEccc
Confidence 65445788888744
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.79 E-value=1.4 Score=47.40 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=54.3
Q ss_pred EEEEEcCCeEEEEEcCCCeEEE-EeccCCCCEEEEEEecCCCEEEEEEC-----C------CeEEEEEcCCCeEEEEEcc
Q psy2685 24 ILSSLHNGVIQLWDYRMNTLLE-KFDEHEGPVRGICFHNQQPIFVSGGD-----D------YKIKVWNYKQRKCIFTLLG 91 (992)
Q Consensus 24 Lasg~~dg~I~IWd~~~g~~~~-~~~~h~~~V~~l~fspdg~~Lasgs~-----D------g~I~VWd~~t~~~~~~l~~ 91 (992)
++.|+ ..+.+||..+++... .+.....+...-....++..++.|+. . ..+.+||..+++... +..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCC
Confidence 44454 679999998887543 22212223333333457778888873 1 127788888776432 221
Q ss_pred CCCCEE--EEEEecCCCEEEEEECC--------CeEEEEECCCCe
Q psy2685 92 HLDYIR--TTFFHHEYPWILSASDD--------QTIRIWNWQSRN 126 (992)
Q Consensus 92 h~~~V~--~i~fspd~~~L~sgs~D--------g~I~vwdl~t~~ 126 (992)
...+-. +++. -++..++.|+.+ ..+.+||..+++
T Consensus 85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~ 128 (315)
T 4asc_A 85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128 (315)
T ss_dssp BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCc
Confidence 111111 1222 255666676632 458899988765
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.53 E-value=0.88 Score=49.06 Aligned_cols=112 Identities=10% Similarity=0.023 Sum_probs=59.1
Q ss_pred EEEEEcCCCCEEEEEEc----C-------CeEEEEEcCCCeEEEEeccCCCCEE--EEEEecCCCEEEEEECC-------
Q psy2685 13 KGLSFHPKRPWILSSLH----N-------GVIQLWDYRMNTLLEKFDEHEGPVR--GICFHNQQPIFVSGGDD------- 72 (992)
Q Consensus 13 ~~iafspdg~~Lasg~~----d-------g~I~IWd~~~g~~~~~~~~h~~~V~--~l~fspdg~~Lasgs~D------- 72 (992)
.......++..++.|+. + ..+.+||..+++... +..-..+-. +++. -++..++.|+.+
T Consensus 38 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~ 115 (315)
T 4asc_A 38 HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERC 115 (315)
T ss_dssp EEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCB
T ss_pred ceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcc
Confidence 33344457788888874 1 127788988776533 221111111 1122 256666677632
Q ss_pred -CeEEEEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEEC-C-----CeEEEEECCCCe
Q psy2685 73 -YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASD-D-----QTIRIWNWQSRN 126 (992)
Q Consensus 73 -g~I~VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~-D-----g~I~vwdl~t~~ 126 (992)
..+.++|..+++....-......-...+...++..++.|+. + ..+.+||..+.+
T Consensus 116 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred cceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 46889998887643321111111111112245567777775 2 468899988764
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.28 E-value=7.8 Score=42.55 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=85.2
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEE--EEec----cCCCCEEEEEEecC---CCEEEEE---ECC
Q psy2685 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLL--EKFD----EHEGPVRGICFHNQ---QPIFVSG---GDD 72 (992)
Q Consensus 5 l~~H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~--~~~~----~h~~~V~~l~fspd---g~~Lasg---s~D 72 (992)
+-..-.....|+|.|+|.++++--..|.|++++..+++.. ..+. ...+...+|+|+|+ +.+|... ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3344456789999999996666544899999986656532 2221 23456899999995 3444443 234
Q ss_pred CeEEEEEcCCC----------eEEE-EEc-cCCCCEEEEEEecCCCEEEEEEC-------------CCeEEEEECCCC--
Q psy2685 73 YKIKVWNYKQR----------KCIF-TLL-GHLDYIRTTFFHHEYPWILSASD-------------DQTIRIWNWQSR-- 125 (992)
Q Consensus 73 g~I~VWd~~t~----------~~~~-~l~-~h~~~V~~i~fspd~~~L~sgs~-------------Dg~I~vwdl~t~-- 125 (992)
+.|.-|.+..+ +.+. .+. .....-..|.|.|+|.+.++.++ .|.|.-.+....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56666665441 2222 222 11123457999999987777553 355555554321
Q ss_pred ------eeEEEEecCCCCeEEEEEecCCCEEEE
Q psy2685 126 ------NCICVLTGHNHYVMCAQFHPTDDIVVS 152 (992)
Q Consensus 126 ------~~i~~l~~h~~~V~sl~fspdg~~L~s 152 (992)
.....-.+|. ....++|+|++.+.++
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 1111112443 3457899998765544
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.04 E-value=3.6 Score=46.32 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=95.6
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCeEEEEEccC----CCCEEEEEEecCCCEEEEEECCCeEEEEECCCCe---------
Q psy2685 60 HNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGH----LDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN--------- 126 (992)
Q Consensus 60 spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h----~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~--------- 126 (992)
..+|..++.+- ++.|+.-++..+...+.+... -+.|..+..+|+|.+|+..+.. .|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence 34555555543 357777676644333333322 2357889999999999988655 78888776221
Q ss_pred ---eEEEEec------CCCCeEEEEEecCC---CEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcce
Q psy2685 127 ---CICVLTG------HNHYVMCAQFHPTD---DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAW 194 (992)
Q Consensus 127 ---~i~~l~~------h~~~V~sl~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~ 194 (992)
....+.- ...+|..+.|||-+ ..|++-..|++|++||+..... ... +++...
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-----------~P~---~L~k~~-- 170 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-----------KPI---VLNKPN-- 170 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-----------CCE---EESCCC--
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-----------CCc---chhccc--
Confidence 1122321 25679999999965 6899999999999999985221 111 222111
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEE
Q psy2685 195 EVDIFRGHYNNVSCVLFHPKSEVIVSNA--EDKSIRLW 230 (992)
Q Consensus 195 ~i~~l~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~vw 230 (992)
.......+...|.+++|.+++-.|...+ .+|.|.-.
T Consensus 171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1112233446789999999887666644 77776544
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.95 E-value=0.32 Score=49.81 Aligned_cols=140 Identities=12% Similarity=-0.026 Sum_probs=81.7
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeE------EEEec--cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q psy2685 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTL------LEKFD--EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYK 81 (992)
Q Consensus 10 ~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~------~~~~~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~ 81 (992)
..++.++|||+|.+.++ .+|.+.-.+..++.. -..+- +-.. -.++.|+|+|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999986666 688776666544111 11110 1111 378999999987777 56988877653
Q ss_pred CCeEE------EEE-ccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCe------eEEEEe-cCCCCeEEEEEecCC
Q psy2685 82 QRKCI------FTL-LGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN------CICVLT-GHNHYVMCAQFHPTD 147 (992)
Q Consensus 82 t~~~~------~~l-~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~------~i~~l~-~h~~~V~sl~fspdg 147 (992)
+.... ..+ ..-=..+..+.|.|+|.+.++. |+.+.-+...++. ....+. +.-+.-+.+.|.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 21100 011 1112467999999999877666 7775433332211 111222 233345567788888
Q ss_pred CEEEEEECCCe
Q psy2685 148 DIVVSASLDQT 158 (992)
Q Consensus 148 ~~L~sgs~Dg~ 158 (992)
.+.++. +|.
T Consensus 194 ~l~~v~--~g~ 202 (236)
T 1tl2_A 194 TLFGVQ--GGK 202 (236)
T ss_dssp CEEEEE--TTE
T ss_pred cEEEEe--CCe
Confidence 766665 663
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.94 E-value=2.9 Score=47.92 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=64.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEE--EEecc------CCCCEEEEEEecC---CCEEEEEEC-----
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLL--EKFDE------HEGPVRGICFHNQ---QPIFVSGGD----- 71 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~--~~~~~------h~~~V~~l~fspd---g~~Lasgs~----- 71 (992)
.-....+|+|.|+|+++++-...+.|.+++..++... ..+.. ..+...+|+|+|+ +.+|..+..
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456789999999996666543347888886556432 23321 2456789999995 555554432
Q ss_pred --------CCeEEEEEcCCC--e-----EEE-EEc-cCCCCEEEEEEecCCCEEEEEEC
Q psy2685 72 --------DYKIKVWNYKQR--K-----CIF-TLL-GHLDYIRTTFFHHEYPWILSASD 113 (992)
Q Consensus 72 --------Dg~I~VWd~~t~--~-----~~~-~l~-~h~~~V~~i~fspd~~~L~sgs~ 113 (992)
...|.-+++..+ + .+. .+. ........|.|.|+|.+.++.++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555655322 1 111 122 11234789999999997777554
No 334
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.93 E-value=0.43 Score=46.45 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=76.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
...|++++|.+..+.. ++...|..||......|+++.|...|.+.-.... ........++.. ..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~---~~ 84 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------TSAEAYYILGSA---NF 84 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHH---HH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--------hhHHHHHHHHHH---HH
Confidence 5678999998887654 5688899999999999999999888876532211 112222222222 22
Q ss_pred hhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH-HHHHHHHHHHhcch----hhHHHHhhhcCCHH
Q psy2685 548 DISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK-LKKMMKIAEIRRDI----SGQYQAALLLGEVG 622 (992)
Q Consensus 548 ~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~r~d~----~~~~~~al~lg~~~ 622 (992)
..+.++++...+.+. +...|.........-..|.-.++.++ ++.+.++++...+. .....++..+|+.+
T Consensus 85 ~~~~~~~a~~~~~~a------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 85 MIDEKQAAIDALQRA------IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HTTCHHHHHHHHHHH------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHH------HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 233333333333321 12223333333333344444444433 22223344333221 12345667779999
Q ss_pred HHHHHHHHc
Q psy2685 623 ERIKILKSC 631 (992)
Q Consensus 623 eai~i~~~~ 631 (992)
+|++.+.+.
T Consensus 159 ~A~~~~~~a 167 (184)
T 3vtx_A 159 EAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888763
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.88 E-value=2.5 Score=45.48 Aligned_cols=109 Identities=8% Similarity=-0.039 Sum_probs=57.4
Q ss_pred EEcCCCCEEEEEEc----CC-------eEEEEEcCCCeEEEE--eccCCCCEEEEEEecCCCEEEEEECC-------CeE
Q psy2685 16 SFHPKRPWILSSLH----NG-------VIQLWDYRMNTLLEK--FDEHEGPVRGICFHNQQPIFVSGGDD-------YKI 75 (992)
Q Consensus 16 afspdg~~Lasg~~----dg-------~I~IWd~~~g~~~~~--~~~h~~~V~~l~fspdg~~Lasgs~D-------g~I 75 (992)
....++..++.|+. ++ .+.+||..+++.... +......-..+.+ ++..++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 33456777777773 12 277888877765432 1111111122222 56677777754 357
Q ss_pred EEEEcCCCeEEEEEccCCCCEE-EEEEecCCCEEEEEEC------CCeEEEEECCCCee
Q psy2685 76 KVWNYKQRKCIFTLLGHLDYIR-TTFFHHEYPWILSASD------DQTIRIWNWQSRNC 127 (992)
Q Consensus 76 ~VWd~~t~~~~~~l~~h~~~V~-~i~fspd~~~L~sgs~------Dg~I~vwdl~t~~~ 127 (992)
.++|..+.+.... .....+.. ..+...++.+++.|+. -..+.+||+.+.+-
T Consensus 130 ~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 130 LCYDPVAAKWSEV-KNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEETTTTEEEEE-CCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred EEEeCCCCCEeEC-CCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 8888887765432 11111111 1111245666677653 24589999987653
No 336
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.31 Score=48.05 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=74.6
Q ss_pred eceeccCCHHHHHHHHHhcCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHH
Q psy2685 470 TLALECGNIDIALEAARVLED-------------KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKL 536 (992)
Q Consensus 470 ~~aL~~g~ldeA~~~a~~i~~-------------~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~ 536 (992)
..||..|+++.|.++....++ ....+.||+.|...|++.+|..+|--+||++.
T Consensus 42 ~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~-------------- 107 (177)
T 3mkq_B 42 QEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKE-------------- 107 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH--------------
T ss_pred HHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHH--------------
Confidence 467889999999998887765 45668889999999999999999888888766
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhh
Q psy2685 537 KKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAAL 616 (992)
Q Consensus 537 ~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al 616 (992)
..+.++
T Consensus 108 --------------------------------------------------------------------------~i~lL~ 113 (177)
T 3mkq_B 108 --------------------------------------------------------------------------RSSIFA 113 (177)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 455566
Q ss_pred hcCCHHHHHHHHHHcCCcHHHHHHHHhcCChHH
Q psy2685 617 LLGEVGERIKILKSCGQTSLAYLTAATHGLSEE 649 (992)
Q Consensus 617 ~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~~~ 649 (992)
..|+..+|.-+...-|.-..|-.+.+..|..+.
T Consensus 114 ~~~r~~eA~~~A~t~g~~~~a~~~~~~~~~~~~ 146 (177)
T 3mkq_B 114 EGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQ 146 (177)
T ss_dssp HTTCHHHHHHHHHHTTCHHHHHHHHHHTTCCGG
T ss_pred HCCChHHHHHHHHHcCcHHHHHHHHHHhCCccc
Confidence 778888888888888888888888888887654
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.60 E-value=1.3 Score=47.57 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=34.5
Q ss_pred CCCEEEEEECC----CeEEEEEcCCCeEEEEEccCCCC--EEEEEEecCCCEEEEEEC----C-----CeEEEEECCCCe
Q psy2685 62 QQPIFVSGGDD----YKIKVWNYKQRKCIFTLLGHLDY--IRTTFFHHEYPWILSASD----D-----QTIRIWNWQSRN 126 (992)
Q Consensus 62 dg~~Lasgs~D----g~I~VWd~~t~~~~~~l~~h~~~--V~~i~fspd~~~L~sgs~----D-----g~I~vwdl~t~~ 126 (992)
++..++.|+.+ ..+.++|..+++.... .....+ -.+++. .++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45566666632 3688889887764432 111110 012222 25566666665 2 468889988765
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.45 E-value=4.5 Score=43.38 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=53.3
Q ss_pred EEEEEEcCCeEEEEEcCCCeEEEE-eccCCCCEEEEEEecCCCEEEEEEC----CC-------eEEEEEcCCCeEEEEEc
Q psy2685 23 WILSSLHNGVIQLWDYRMNTLLEK-FDEHEGPVRGICFHNQQPIFVSGGD----DY-------KIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 23 ~Lasg~~dg~I~IWd~~~g~~~~~-~~~h~~~V~~l~fspdg~~Lasgs~----Dg-------~I~VWd~~t~~~~~~l~ 90 (992)
.++.|+ ..+..||..+++.... +.....+...-....++..++.|+. ++ .+.++|..+++.... .
T Consensus 18 i~~~GG--~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~ 94 (318)
T 2woz_A 18 ILLVND--TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-P 94 (318)
T ss_dssp EEEECS--SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC-S
T ss_pred hhhccc--cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC-C
Confidence 344444 3488999888875442 2211122223333456778888873 12 177788877765332 1
Q ss_pred cCCCC--EEEEEEecCCCEEEEEECC-------CeEEEEECCCCee
Q psy2685 91 GHLDY--IRTTFFHHEYPWILSASDD-------QTIRIWNWQSRNC 127 (992)
Q Consensus 91 ~h~~~--V~~i~fspd~~~L~sgs~D-------g~I~vwdl~t~~~ 127 (992)
....+ -.+++. -++..++.|+.+ ..+.+||..+.+-
T Consensus 95 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 95 PLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp CBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred CCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 11111 112222 256677777754 3578888877653
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.66 Score=51.02 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=75.0
Q ss_pred CEEEEEEcCCeEEEEEcCCCeEEEEeccC-CCCEEEEEEe--cCCCEEEEE--ECCCeEEEEEcCCCeEEEEEcc----C
Q psy2685 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEH-EGPVRGICFH--NQQPIFVSG--GDDYKIKVWNYKQRKCIFTLLG----H 92 (992)
Q Consensus 22 ~~Lasg~~dg~I~IWd~~~g~~~~~~~~h-~~~V~~l~fs--pdg~~Lasg--s~Dg~I~VWd~~t~~~~~~l~~----h 92 (992)
..+++++.||.|.-.|..+|+...+++.. ..++....-. +.+..++.+ +.||.+..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46889999999999999999999998754 1232221100 112234443 5899999999988865554431 2
Q ss_pred CCCEEEE---EE-----ecCCCEEEEEECCCeEEEEECCCCeeEEEEec
Q psy2685 93 LDYIRTT---FF-----HHEYPWILSASDDQTIRIWNWQSRNCICVLTG 133 (992)
Q Consensus 93 ~~~V~~i---~f-----spd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~ 133 (992)
..++..- .. ...+..+++|+.+|.+...|.++|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 2333320 00 01355788999999999999999999998874
No 340
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.23 E-value=8.7 Score=42.34 Aligned_cols=166 Identities=8% Similarity=0.160 Sum_probs=88.6
Q ss_pred CEEEEEEecCCCEEEEE------------ECCCeEEEEEcCC--CeEE-EEEcc-----CCCCEEEEEEec--CCC-EEE
Q psy2685 53 PVRGICFHNQQPIFVSG------------GDDYKIKVWNYKQ--RKCI-FTLLG-----HLDYIRTTFFHH--EYP-WIL 109 (992)
Q Consensus 53 ~V~~l~fspdg~~Lasg------------s~Dg~I~VWd~~t--~~~~-~~l~~-----h~~~V~~i~fsp--d~~-~L~ 109 (992)
..-.+...|+|..++++ ..+|.|.++|.++ ++.. ..+.+ ..-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778877554444 2689999999873 2321 12222 234677888866 343 444
Q ss_pred EEE-C--CCeEEEEECCCC--e--eEEEEecC-CCCeEEEEEecCCCEEEEEEC---CCeEEEEECCCCccccccCCccc
Q psy2685 110 SAS-D--DQTIRIWNWQSR--N--CICVLTGH-NHYVMCAQFHPTDDIVVSASL---DQTIRVWDISGLRKKNVAPGMGA 178 (992)
Q Consensus 110 sgs-~--Dg~I~vwdl~t~--~--~i~~l~~h-~~~V~sl~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~ 178 (992)
++. . +.+|-+|+++.. . .+..+.+. -.....+.+.++|.+.++... |.....++. ..+.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~----------~~~~ 200 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM----------HLGL 200 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH----------HTTC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh----------hccC
Confidence 443 2 467778776543 2 22233322 234678888888876655431 100000000 0011
Q ss_pred CCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q psy2685 179 DDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMT 233 (992)
Q Consensus 179 ~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~ 233 (992)
..+.+..++. ++. ..+...-...+.++|+||++.|..+. ..+.|..|++.
T Consensus 201 ~~g~vyr~d~--~~~---~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 201 AWSFVTYYSP--NDV---RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp CCEEEEEECT--TCC---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CccEEEEEEC--CeE---EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 1244444443 221 12222334578899999998766554 56788888875
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.85 E-value=22 Score=43.21 Aligned_cols=261 Identities=11% Similarity=0.090 Sum_probs=146.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEec----cCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q psy2685 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFD----EHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRK 84 (992)
Q Consensus 9 ~~~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~ 84 (992)
+..|.++.-.++|. |-.|+.+| +..||-.. ...+. .....|.++.-.++| .|..|+.+| +..+|..+.+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence 45799998888775 55666777 56677322 22222 123568898888776 566666665 7889988765
Q ss_pred EEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe-----cCCCCeEEEEEecCCCEEEEEECCCeE
Q psy2685 85 CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLT-----GHNHYVMCAQFHPTDDIVVSASLDQTI 159 (992)
Q Consensus 85 ~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~-----~h~~~V~sl~fspdg~~L~sgs~Dg~I 159 (992)
...........|.++.. .++ .+..|+.+ -+..+|..+++.. .+. .....|.++...+++.+.+ |+.+| +
T Consensus 94 f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l 167 (758)
T 3ott_A 94 YEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-L 167 (758)
T ss_dssp ECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-E
T ss_pred EECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-H
Confidence 43211112335777654 344 56677766 6888998766533 331 1234688888877776544 55544 6
Q ss_pred EEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee
Q psy2685 160 RVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLN 239 (992)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I~vwdl~~~~~l~ 239 (992)
..++..+. .+..+...... ......|.++...+++..|..|+. +-+..+|..+++...
T Consensus 168 ~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~ 225 (758)
T 3ott_A 168 CRYIPSNG--------------KFEGIPLPVHS-------SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ 225 (758)
T ss_dssp EEEETTTT--------------EEEEECCCCCT-------TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE
T ss_pred hhCccCCC--------------ceEEecCCCcc-------ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe
Confidence 67776542 22111111000 001234788888877775555664 457888887765322
Q ss_pred EeeccCcccc------cCEEEEEeCCCeEEEEECCCCeEEEEee-------cCCCCEEEEEEeCCCCEEEEEECCCEEEE
Q psy2685 240 TFRREQERFW------SEVIVSNAEDKSIRLWDMTKRTCLNTFR-------REQERFWVLVAHPTLNLFAAGHDAGMVVF 306 (992)
Q Consensus 240 ~~~~~~~~~~------s~~l~sgs~Dg~I~vwd~~t~~~v~~l~-------~h~~~V~~la~spdg~~Lasgsddgiivw 306 (992)
........+. ...+..|+. +-+.+++..++....... -....|.++....+|.+-+ |++.|+.++
T Consensus 226 ~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~Gl~~~ 303 (758)
T 3ott_A 226 TEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYGISLS 303 (758)
T ss_dssp EEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSSEEEE
T ss_pred ccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCccccc
Confidence 1111111111 244555664 457788877654322111 1234588888888887655 445676443
No 342
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.83 E-value=0.68 Score=56.57 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=89.5
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
.+.|++++|.+..++. +....|.+||....+.|+++.|+.+|.++=..+- +..+ -...++....
T Consensus 20 ~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--------~~~~---a~~nLg~~l~ 88 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--------TFAD---AYSNMGNTLK 88 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHH---HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHH---HHHHHHHHHH
Confidence 5789999999887643 5688999999999999999999999987632211 2222 2333444455
Q ss_pred hhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHH-HHHHHHHhcchhh----HHHHhhhcCCHH
Q psy2685 548 DISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKK-MMKIAEIRRDISG----QYQAALLLGEVG 622 (992)
Q Consensus 548 ~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~r~d~~~----~~~~al~lg~~~ 622 (992)
..+.+++|...+.+ ++..+|....+..+.-..|.-.++.++..+ +.+++++.-+... ....+..+|+.+
T Consensus 89 ~~g~~~~A~~~~~k------Al~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 89 EMQDVQGALQCYTR------AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HTTCHHHHHHHHHH------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HcCCHHHHHHHHHH------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 66677777777664 234456655565555566666666555333 3455555544332 234455667777
Q ss_pred HHHHHHHH
Q psy2685 623 ERIKILKS 630 (992)
Q Consensus 623 eai~i~~~ 630 (992)
+|++.+.+
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 343
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.51 E-value=2.8 Score=42.56 Aligned_cols=170 Identities=14% Similarity=0.028 Sum_probs=100.0
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
...|++++|.+..+.. .+...|..+|......|+++.|..+|.++-.... ..... ...++....
T Consensus 48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~---~~~la~~~~ 116 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--------RNARV---LNNYGGFLY 116 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHH---HHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------CcHHH---HHHHHHHHH
Confidence 5678888888776543 4578899999999999999999999887643221 12222 223344445
Q ss_pred hhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHH-HHHHHHhcc----hhhHHHHhhhcCCHH
Q psy2685 548 DISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKM-MKIAEIRRD----ISGQYQAALLLGEVG 622 (992)
Q Consensus 548 ~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~r~d----~~~~~~~al~lg~~~ 622 (992)
..+.+++|...+.+.-. ....|.........-..|...++.++..+. .++++...+ .......+..+|+.+
T Consensus 117 ~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 66777777777776544 113344444444445566666665553332 233333322 222445677789999
Q ss_pred HHHHHHHHcC----CcHHH-H---HHHHhcCChHHHHHHHhhc
Q psy2685 623 ERIKILKSCG----QTSLA-Y---LTAATHGLSEEAAELESNL 657 (992)
Q Consensus 623 eai~i~~~~~----~~~~A-~---~~A~~~~~~~~~~~~~~~~ 657 (992)
+|++.+.+.- ....+ + .+....|..+.+.+..+.+
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999888751 11111 2 2234456666666555544
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.95 E-value=17 Score=39.81 Aligned_cols=103 Identities=8% Similarity=0.028 Sum_probs=59.5
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE-------ccCCCCEEEEEEecC---CCEEEEEE-C-------
Q psy2685 52 GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTL-------LGHLDYIRTTFFHHE---YPWILSAS-D------- 113 (992)
Q Consensus 52 ~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~V~~i~fspd---~~~L~sgs-~------- 113 (992)
....+|+|.|+|+.++++...|.|.+++. .+.....+ .........++|+|+ +..|..+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34589999999983445567899999984 34322111 112345789999996 45454442 2
Q ss_pred CCeEEEEECCCC--e--eEE-EEec------CCCCeEEEEEecCCCEEEEEEC
Q psy2685 114 DQTIRIWNWQSR--N--CIC-VLTG------HNHYVMCAQFHPTDDIVVSASL 155 (992)
Q Consensus 114 Dg~I~vwdl~t~--~--~i~-~l~~------h~~~V~sl~fspdg~~L~sgs~ 155 (992)
...|..|++... . ... .+.. ..+....+.|.|||.+.++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 235666766532 1 111 1211 1223467999999965555433
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.67 E-value=2.3 Score=46.55 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=46.7
Q ss_pred CCCEEEEEEc-CCeEEEEEcCC--CeEEE--Eec-cCCCCEEEEEEecCCCEEEEEEC-C---------CeEEEEEcCCC
Q psy2685 20 KRPWILSSLH-NGVIQLWDYRM--NTLLE--KFD-EHEGPVRGICFHNQQPIFVSGGD-D---------YKIKVWNYKQR 83 (992)
Q Consensus 20 dg~~Lasg~~-dg~I~IWd~~~--g~~~~--~~~-~h~~~V~~l~fspdg~~Lasgs~-D---------g~I~VWd~~t~ 83 (992)
++..++.|+. ...+.+||..+ .+... .+. .....-.++. -++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666666654 35688899763 33322 222 1111112222 25667777765 2 46888998887
Q ss_pred eEEEEEccC-CCCEEEEEEecCCCEEEEEECC
Q psy2685 84 KCIFTLLGH-LDYIRTTFFHHEYPWILSASDD 114 (992)
Q Consensus 84 ~~~~~l~~h-~~~V~~i~fspd~~~L~sgs~D 114 (992)
+....-... .......+...++.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 644321111 1111111222566777888754
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.41 E-value=7.5 Score=44.45 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=63.1
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE--EEcc------CCCCEEEEEEecC---CCEEEEEEC-------
Q psy2685 52 GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIF--TLLG------HLDYIRTTFFHHE---YPWILSASD------- 113 (992)
Q Consensus 52 ~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l~~------h~~~V~~i~fspd---~~~L~sgs~------- 113 (992)
....+|+|.|+|.++++-...+.|.+++..+++... .+.. ..+.+..|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356799999999876664444578888765554322 2221 2456789999995 555544432
Q ss_pred ------CCeEEEEECCCC-------eeEEE-Ee-cCCCCeEEEEEecCCCEEEEEECC
Q psy2685 114 ------DQTIRIWNWQSR-------NCICV-LT-GHNHYVMCAQFHPTDDIVVSASLD 156 (992)
Q Consensus 114 ------Dg~I~vwdl~t~-------~~i~~-l~-~h~~~V~sl~fspdg~~L~sgs~D 156 (992)
...|.-+++..+ +.+.. +. ...+....+.|.|||.+.++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 235555655321 11221 22 123557899999999877765543
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.37 E-value=17 Score=42.25 Aligned_cols=273 Identities=9% Similarity=0.050 Sum_probs=150.7
Q ss_pred EEEEEEcCCeEEEEEcCCCeEEEEeccCC-------------------------CCE--EEEEEe---cCCCEEEEEEC-
Q psy2685 23 WILSSLHNGVIQLWDYRMNTLLEKFDEHE-------------------------GPV--RGICFH---NQQPIFVSGGD- 71 (992)
Q Consensus 23 ~Lasg~~dg~I~IWd~~~g~~~~~~~~h~-------------------------~~V--~~l~fs---pdg~~Lasgs~- 71 (992)
.+.+|+++|.|+|+-+.+++.+..+...+ +.. ..+++. -||++|..-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 46788999999999999999888764111 111 123332 25778877664
Q ss_pred CCeEEEEEcCCCeEEEEEc-cCCCCEEEEEEe--cCCCEEEEEEC-------CCeE------------EEEECCCCeeEE
Q psy2685 72 DYKIKVWNYKQRKCIFTLL-GHLDYIRTTFFH--HEYPWILSASD-------DQTI------------RIWNWQSRNCIC 129 (992)
Q Consensus 72 Dg~I~VWd~~t~~~~~~l~-~h~~~V~~i~fs--pd~~~L~sgs~-------Dg~I------------~vwdl~t~~~i~ 129 (992)
+..|-..+++..++-..+. .....+.++.|- |+..+++.++. ||.. ...|.++.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 6788888998888766554 345678888886 67778887765 2321 111222222222
Q ss_pred EEecCCCCeEEEEEecCCCEEEEEECCC---------------eEEEEECCCCccccccCCcccCCC-eEEEEEccC---
Q psy2685 130 VLTGHNHYVMCAQFHPTDDIVVSASLDQ---------------TIRVWDISGLRKKNVAPGMGADDR-QIKLWRMND--- 190 (992)
Q Consensus 130 ~l~~h~~~V~sl~fspdg~~L~sgs~Dg---------------~I~iwd~~~~~~~~~~~~~~~~d~-~I~iwd~~~--- 190 (992)
.+.- .+..-.+...+++.+.++.+.+. .+.++++............-.-++ .+.+.|...
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2111 11222344566777777776432 244444421100000000001111 466666654
Q ss_pred -CcceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC------ee-------eeEeeccCcc----cc--
Q psy2685 191 -SKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA-EDKSIRLWDMTKR------TC-------LNTFRREQER----FW-- 249 (992)
Q Consensus 191 -~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~vwdl~~~------~~-------l~~~~~~~~~----~~-- 249 (992)
.. ....+-.-......+..+|||+++++++ .+.++.++|+... +. .........+ +.
T Consensus 311 ~~~--~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDS--KFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGR 388 (638)
T ss_dssp BCC--SSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred cCC--ceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCC
Confidence 22 1222222334456788999999888766 4789999998741 11 1111111111 11
Q ss_pred cCEEEEEeCCCeEEEEECCCC----------eEEEEeecCCCCEEEEEE------eCCCCEEEEEE
Q psy2685 250 SEVIVSNAEDKSIRLWDMTKR----------TCLNTFRREQERFWVLVA------HPTLNLFAAGH 299 (992)
Q Consensus 250 s~~l~sgs~Dg~I~vwd~~t~----------~~v~~l~~h~~~V~~la~------spdg~~Lasgs 299 (992)
+....+.--|.+|.-|++... ..+..+..|-.+- .+.- .|+|++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 234445557999999998753 3566666554332 2222 57899988865
No 348
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=91.33 E-value=4 Score=40.13 Aligned_cols=145 Identities=7% Similarity=0.025 Sum_probs=86.5
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
....|++++|.+..+.. ++...|..+|......|+++.|..+|.++-.... ..... ...++...
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~---~~~l~~~~ 86 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--------DSAEI---NNNYGWFL 86 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHH---HHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------CChHH---HHHHHHHH
Confidence 35678999998877543 4578999999999999999999999987643221 12222 22334444
Q ss_pred Hhh-chHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHH-HHHHHHhcc----hhhHHHHhhhcCC
Q psy2685 547 RDI-SGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKM-MKIAEIRRD----ISGQYQAALLLGE 620 (992)
Q Consensus 547 ~~~-~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~r~d----~~~~~~~al~lg~ 620 (992)
... +.+++|...+.+.-+ ...+|.........-..|.-.++.++.... .++++...+ .......++.+|+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 556 677777777766433 123343334444445555555555543332 233333222 1123445667788
Q ss_pred HHHHHHHHHHc
Q psy2685 621 VGERIKILKSC 631 (992)
Q Consensus 621 ~~eai~i~~~~ 631 (992)
.++|++.+.+.
T Consensus 163 ~~~A~~~~~~~ 173 (225)
T 2vq2_A 163 LGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887664
No 349
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.31 E-value=3.7 Score=42.17 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=33.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
...|++++|.+..+.. .+...|..+|......|+++.|..+|.++-..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 5667777777766433 34667777777777777777777777766544
No 350
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.09 E-value=5.1 Score=40.20 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=40.1
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+..|++++|....+.. ++...|..||...+..|+++.|+.+|.++-
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6789999999988653 468899999999999999999999998764
No 351
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.94 E-value=8.5 Score=42.26 Aligned_cols=111 Identities=11% Similarity=0.053 Sum_probs=67.7
Q ss_pred EeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE--EE----ccCCCCEEEEEEecC---CCEEEEE-E--C
Q psy2685 46 KFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIF--TL----LGHLDYIRTTFFHHE---YPWILSA-S--D 113 (992)
Q Consensus 46 ~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l----~~h~~~V~~i~fspd---~~~L~sg-s--~ 113 (992)
.+-..-..-.+|+|.|+|.++++--..|.|.+++..+++... .+ .........|+++|+ +.+|... + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333334556899999999877765558999999866555422 11 123456899999995 3444433 2 3
Q ss_pred CCeEEEEECCCC----------eeEE-EEe-cCCCCeEEEEEecCCCEEEEEECC
Q psy2685 114 DQTIRIWNWQSR----------NCIC-VLT-GHNHYVMCAQFHPTDDIVVSASLD 156 (992)
Q Consensus 114 Dg~I~vwdl~t~----------~~i~-~l~-~h~~~V~sl~fspdg~~L~sgs~D 156 (992)
++.|.-|.+..+ +.+. .+. ...+.-..+.|.|||.+.++.+..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 456666665541 2222 122 123345678999999877765543
No 352
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=90.85 E-value=3.5 Score=43.06 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=88.9
Q ss_pred eeccCCHHHHHHHHHhcC----------C---hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHH--hCCHHHH
Q psy2685 472 ALECGNIDIALEAARVLE----------D---KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLI--TGNLEKL 536 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i~----------~---~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i--~~~~ek~ 536 (992)
....|++++|.+..+..- . ...|..||......|+++.|+.+|.++-.. .... .......
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-----REKTLGKDHPAVA 111 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHHhCCCChHHH
Confidence 367889999888775431 2 457899999999999999999999876332 1122 2223334
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhcCCccccc--ccchhhhHHHHHHHHHHHhccchHHHHH----HHHHHHHh--c-c
Q psy2685 537 KKMMKIAEIRRDISGQYQAALLLGRMGRGFFLL--HYFSFFFFAFLRLAFLYLITGNLEKLKK----MMKIAEIR--R-D 607 (992)
Q Consensus 537 ~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~r--~-d 607 (992)
.-...++......+.+++|...+.+.-+..... ...|.........-..|...++.+.... ++.+++.. . +
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444555655666777777777776543222111 1224444444444555555555544222 22332211 0 1
Q ss_pred ------hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 608 ------ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 608 ------~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
.......+..+|+.++|++.+.+.
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112334556668888888777664
No 353
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.69 E-value=4.6 Score=40.91 Aligned_cols=145 Identities=10% Similarity=-0.085 Sum_probs=84.2
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
....|++++|.+..+.. .+...|..+|......|+++.|+.+|.++-... .......-...++...
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT---------LYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT---------TCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc---------cCcccHHHHHHHHHHH
Confidence 37789999999987643 468899999999999999999999999876510 0111112222333444
Q ss_pred HhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHH-HHHHHhcc----hhhHHHHhhhcCCH
Q psy2685 547 RDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMM-KIAEIRRD----ISGQYQAALLLGEV 621 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~r~d----~~~~~~~al~lg~~ 621 (992)
...+.+++|...+.+.- ...|............|.-.++.++....+ ++++...+ +......+..+|+.
T Consensus 152 ~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSL------RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHTTCHHHHHHHHHHHH------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHH------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 45566666666665432 222333334444455555555555533322 22221111 11133455567888
Q ss_pred HHHHHHHHHc
Q psy2685 622 GERIKILKSC 631 (992)
Q Consensus 622 ~eai~i~~~~ 631 (992)
++|.+.+.+.
T Consensus 226 ~~A~~~~~~~ 235 (252)
T 2ho1_A 226 DTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 354
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=90.67 E-value=2.9 Score=45.96 Aligned_cols=163 Identities=9% Similarity=-0.039 Sum_probs=92.5
Q ss_pred eccCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCC--HHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-------ED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGN--LEKLKKM 539 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~--~ek~~~l 539 (992)
...|++++|.+..+.. ++ ...|..||......|+.+.|..+|.++-+... -.+. .....-.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK------EHEAYNIRLLQCH 187 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------TCSTTHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------hCccchHHHHHHH
Confidence 6779999998877543 22 36899999999999999999999887643211 1111 1112223
Q ss_pred HHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH----HHHHHHHHHHhcc-------h
Q psy2685 540 MKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK----LKKMMKIAEIRRD-------I 608 (992)
Q Consensus 540 a~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~r~d-------~ 608 (992)
..++.+....+.+++|...+.+.-+........+.........-..|.-.++.++ +++++.+.+..++ +
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 3444445555666666666554322221112222222333333444554554444 3334455444444 2
Q ss_pred hhHHHHhhhcCCHHHHHHHHHHcCCcHHHHHHHHhcCCh
Q psy2685 609 SGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLS 647 (992)
Q Consensus 609 ~~~~~~al~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~ 647 (992)
......+..+|+.++|++.+.+ |+.+++..+.+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~ 300 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSK------GMAYSQKAGDV 300 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------HHHHHHHcCCH
Confidence 3345667778999999888765 44555544443
No 355
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.56 E-value=4.9 Score=44.24 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=86.2
Q ss_pred eccCCHHHHHHHHHhc-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-------E----DKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMK 541 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------~----~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ 541 (992)
...|++++|.+.++.. . ....|..||......|+++.|..+|.++-+. ............-...
T Consensus 97 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL-----ARQLGDRLSEGRALYN 171 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHhhchHHHHHHHHH
Confidence 5678888888865432 2 2468999999999999999999999876432 1122222222333334
Q ss_pred HHHHHHhhch-----------------HHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH----HHHHHH
Q psy2685 542 IAEIRRDISG-----------------QYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK----LKKMMK 600 (992)
Q Consensus 542 ia~i~~~~~~-----------------~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 600 (992)
++.+....+. +++|...+.+.-+....+...|.........-..|...++.+. +++++.
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444455555 5666655554322221122223333344444555555555554 223333
Q ss_pred HHHHhcc-------hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 601 IAEIRRD-------ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 601 ~~e~r~d-------~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
+.....+ +......++.+|+.++|++.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333333 222455677778888888887653
No 356
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=90.36 E-value=0.6 Score=47.37 Aligned_cols=143 Identities=18% Similarity=0.075 Sum_probs=65.3
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHc-----------CCHHHHHHHHHHccCcchHHHHHHHhCCHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQ-----------GNHQIVEMCYQRTKNFDKLAFLYLITGNLEKL 536 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~-----------~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~ 536 (992)
...|++++|.+..+.. ++...|..||...... |+++.|+.+|.+.-..+- +..+.
T Consensus 50 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--------~~~~~- 120 (217)
T 2pl2_A 50 LKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--------RYAPL- 120 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--------TCHHH-
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--------ccHHH-
Confidence 6789999999887643 4678999999999999 999999999987643211 11111
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH-HHHHHHHHHHhcchh----hH
Q psy2685 537 KKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK-LKKMMKIAEIRRDIS----GQ 611 (992)
Q Consensus 537 ~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~r~d~~----~~ 611 (992)
...++.+....+.+++|...+.+.-+.. .+|. .....-..|.-.++.+. +..+-+++++.-+.. ..
T Consensus 121 --~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 121 --HLQRGLVYALLGERDKAEASLKQALALE----DTPE---IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHhcc----cchH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 1222333344455555555554422111 1121 11222223333333333 222223333322211 13
Q ss_pred HHHhhhcCCHHHHHHHHHHcCC
Q psy2685 612 YQAALLLGEVGERIKILKSCGQ 633 (992)
Q Consensus 612 ~~~al~lg~~~eai~i~~~~~~ 633 (992)
...+..+|+.++|++.+.+.++
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHTC----------------
T ss_pred HHHHHHccCHHHHHHHHHHHhh
Confidence 3456677899999888877653
No 357
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.30 E-value=2.7 Score=48.26 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=84.0
Q ss_pred eccCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 473 LECGNI-DIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 473 L~~g~l-deA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
...|++ ++|.+..+.. ++...|..||......|+++.|+.+|.++-..+. +. .-...++.+.
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------~~---~~~~~lg~~~ 180 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---------NK---VSLQNLSMVL 180 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---------CH---HHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------CH---HHHHHHHHHH
Confidence 678999 9999887543 4588999999999999999999999998755432 11 2233344444
Q ss_pred Hhh---------chHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhc--------cchHH-HHHHHHHHHHhc--
Q psy2685 547 RDI---------SGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLIT--------GNLEK-LKKMMKIAEIRR-- 606 (992)
Q Consensus 547 ~~~---------~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~e~r~-- 606 (992)
... +.+++|...+.+. +..+|....+....-..|... ++.++ ++.+.+++++..
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLA------VQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHH------HHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHhccCChhhhhhhHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 555 6677777777652 223344333333333333322 22222 222223333332
Q ss_pred -c----hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 607 -D----ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 607 -d----~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
+ +......+..+|+.++|++.+.+.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 112345666778888888887764
No 358
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.19 E-value=5.2 Score=43.99 Aligned_cols=159 Identities=13% Similarity=0.001 Sum_probs=82.8
Q ss_pred HHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 478 IDIALEAARVL-------ED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 478 ldeA~~~a~~i-------~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
+++|.+..+.. .+ ...|..+|...+..|+++.|+.+|.++-+... ..........-...++.+.
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR-----EFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----hcCCcHHHHHHHHHHHHHH
Confidence 78887765432 22 34899999999999999999999987643221 1111111122333444445
Q ss_pred HhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH----HHHHHHHHHHhcc-------hhhHHHHh
Q psy2685 547 RDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK----LKKMMKIAEIRRD-------ISGQYQAA 615 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~r~d-------~~~~~~~a 615 (992)
...+.+++|...+.+.-+........+.........-..|.-.++.+. +++++.+....++ +......+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 555666666666554322221111111112233333444444444444 3333333333222 12234566
Q ss_pred hhcCCHHHHHHHHHHcCCcHHHHHHHHhcCCh
Q psy2685 616 LLLGEVGERIKILKSCGQTSLAYLTAATHGLS 647 (992)
Q Consensus 616 l~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~ 647 (992)
..+|+.++|++.+.+ |+.+++..+..
T Consensus 354 ~~~g~~~~A~~~~~~------al~~~~~~~~~ 379 (411)
T 4a1s_A 354 SAIGGHERALKYAEQ------HLQLAXXXXXX 379 (411)
T ss_dssp HHTTCHHHHHHHHHH------HHHHCCHHHHH
T ss_pred HHhccHHHHHHHHHH------HHHHHhhcccc
Confidence 677888888887665 44444444433
No 359
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.17 E-value=0.45 Score=45.72 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=31.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
...|++++|.+..+.. +++..|..||......|+++.|..+|.++
T Consensus 47 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5567777777766543 35677777777777777777777777665
No 360
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.14 E-value=2.1 Score=43.32 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=40.7
Q ss_pred eeccCCHHHHHHHHHhcCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 472 ALECGNIDIALEAARVLED------------KSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i~~------------~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
....|++++|.+.++..-. ...|..||......++++.|..+|.++-..
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3678999999988865421 589999999999999999999999887653
No 361
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.02 E-value=3.1 Score=42.56 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=62.2
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeE------EEEEc--cCCCCEEEEEEecCCCEEEEEECCCeEEEEECC
Q psy2685 52 GPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKC------IFTLL--GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQ 123 (992)
Q Consensus 52 ~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~------~~~l~--~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~ 123 (992)
..++.++|+|+|.+.++ .+|.+.-.+..++.. -..+- +-.. -..+.|.|+|.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999986666 677655545433110 11110 1111 478899999987777 55988877753
Q ss_pred CCeeE------EEE-ecCCCCeEEEEEecCCCEEEEEECCCeEE
Q psy2685 124 SRNCI------CVL-TGHNHYVMCAQFHPTDDIVVSASLDQTIR 160 (992)
Q Consensus 124 t~~~i------~~l-~~h~~~V~sl~fspdg~~L~sgs~Dg~I~ 160 (992)
+...- ..+ .+-=..+..+.|.|+|.+.++. |+.+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 31110 111 1112457999999999877766 77643
No 362
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.81 E-value=4.5 Score=40.46 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=32.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+.++.. .+...|..+|......|+++.|..+|.++-
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5667777777766543 356777777877777888887777776653
No 363
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=89.75 E-value=5.5 Score=46.42 Aligned_cols=106 Identities=9% Similarity=0.035 Sum_probs=53.5
Q ss_pred HHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHH-HHHHHhcc----hhhHHHHhhhcCC
Q psy2685 546 RRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMM-KIAEIRRD----ISGQYQAALLLGE 620 (992)
Q Consensus 546 ~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~r~d----~~~~~~~al~lg~ 620 (992)
....+.+++|..++.+.- ...|...........+|.-.+..+.-.+.. ++.+...+ +......+...|+
T Consensus 417 ~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAA------RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHTCHHHHHHHHHHHH------HTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHH------HhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 344555566666555432 112332333344455566555555533322 33333222 2224456677799
Q ss_pred HHHHHHHHHHc---------CCc--HHHH----HHHHhcCChHHHHHHHhhc
Q psy2685 621 VGERIKILKSC---------GQT--SLAY----LTAATHGLSEEAAELESNL 657 (992)
Q Consensus 621 ~~eai~i~~~~---------~~~--~~A~----~~A~~~~~~~~~~~~~~~~ 657 (992)
.++|++.+.+. ... ..++ .+....|..+.|.+..+.+
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999888876 221 1221 2334556666666666554
No 364
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=89.67 E-value=5.9 Score=42.10 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=81.6
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcch----HHHHHHHhCCHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDK----LAFLYLITGNLEKLKKMMKIA 543 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~----l~~L~~i~~~~ek~~~la~ia 543 (992)
...|++++|.+.++.. ++...|..+|......|+++.|..+|.++-.... -...+...+...........+
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888877543 3567888888888888888888888887644322 111111111111122222334
Q ss_pred HHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHH-HHHHHhcc----hhhHHHHhhhc
Q psy2685 544 EIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMM-KIAEIRRD----ISGQYQAALLL 618 (992)
Q Consensus 544 ~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~r~d----~~~~~~~al~l 618 (992)
......+.+++|...+.+. +..+|.........-..|.-.++.+...... ++++...+ +......+..+
T Consensus 128 ~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKI------LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHH------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH------HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455566666666666553 2223433344444445555555554433322 22222111 11234556667
Q ss_pred CCHHHHHHHHHHc
Q psy2685 619 GEVGERIKILKSC 631 (992)
Q Consensus 619 g~~~eai~i~~~~ 631 (992)
|+.++|++.+.+.
T Consensus 202 ~~~~~A~~~~~~a 214 (359)
T 3ieg_A 202 GDHELSLSEVREC 214 (359)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888877654
No 365
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.45 E-value=7.1 Score=40.80 Aligned_cols=79 Identities=10% Similarity=0.105 Sum_probs=47.8
Q ss_pred HHHHHHHHH-------hcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 478 IDIALEAAR-------VLED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 478 ldeA~~~a~-------~i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
+++|.+..+ ...+ ...|..+|...+..|+++.|+.+|.++-+.. ...........-...++...
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-----KEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHHH
Confidence 666655543 3333 3478999999999999999999998764321 11111122222334445555
Q ss_pred HhhchHHHHHHHHHh
Q psy2685 547 RDISGQYQAALLLGR 561 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~ 561 (992)
...+.+++|...+.+
T Consensus 234 ~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 234 IFLGEFETASEYYKK 248 (338)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 566666666666654
No 366
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=89.36 E-value=12 Score=40.58 Aligned_cols=159 Identities=13% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHH-------HhcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 478 IDIALEAA-------RVLED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 478 ldeA~~~a-------~~i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
+++|.+.. +...+ ...|..+|......|+++.|+.+|.++-... ...........-...++...
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-----KEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-----HhcCCcHHHHHHHHHHHHHH
Confidence 66666554 33333 3579999999999999999999998764321 11111111222334445555
Q ss_pred HhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHH----HHHHHHHHHhcc-------hhhHHHHh
Q psy2685 547 RDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKL----KKMMKIAEIRRD-------ISGQYQAA 615 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~r~d-------~~~~~~~a 615 (992)
...+.+++|...+.+.-+........+.........-..|...++.++. ++++.+....++ +......+
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 5666666666666553222211112222233444445555555555553 233333333322 22244566
Q ss_pred hhcCCHHHHHHHHHHcCCcHHHHHHHHhcCCh
Q psy2685 616 LLLGEVGERIKILKSCGQTSLAYLTAATHGLS 647 (992)
Q Consensus 616 l~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~ 647 (992)
..+|+.++|++.+.+ |+.+++..+..
T Consensus 318 ~~~g~~~~A~~~~~~------al~~~~~~~~~ 343 (406)
T 3sf4_A 318 TALGNHDQAMHFAEK------HLEISREVGDK 343 (406)
T ss_dssp HHHTCHHHHHHHHHH------HHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHH------HHHHHHHhcCC
Confidence 677999999988776 44555555443
No 367
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.16 E-value=6.6 Score=40.04 Aligned_cols=117 Identities=12% Similarity=-0.005 Sum_probs=70.9
Q ss_pred eccCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhC--CHHHHH
Q psy2685 473 LECGNIDIALEAARVL-------------EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITG--NLEKLK 537 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------------~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~--~~ek~~ 537 (992)
...|++++|.+..+.. .....|..||......|+++.|+.+|.++-+. .....+ ......
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 54 RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----REKVLGKFHPDVAK 128 (283)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----HHHHHCTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----HHHHcCCCChHHHH
Confidence 6788999888776432 12558999999999999999999999886433 112211 234444
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhcCCccccc--ccchhhhHHHHHHHHHHHhccchHH
Q psy2685 538 KMMKIAEIRRDISGQYQAALLLGRMGRGFFLL--HYFSFFFFAFLRLAFLYLITGNLEK 594 (992)
Q Consensus 538 ~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (992)
-...++.+....+.+++|...+.+.-...... ...|.........-..|...++.++
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 45556666666677777777766543321111 1134444444445555555555544
No 368
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.15 E-value=7.7 Score=39.47 Aligned_cols=150 Identities=13% Similarity=0.019 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHhc---C---ChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHH--hCCHHHHHHHHHHHHHHH
Q psy2685 476 GNIDIALEAARVL---E---DKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLI--TGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 476 g~ldeA~~~a~~i---~---~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i--~~~~ek~~~la~ia~i~~ 547 (992)
..+++|++.++.. + ....|..||......|+++.|+.+|.++-+. .... ........-...++....
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI-----REKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----HHHHcCCcchHHHHHHHHHHHHHH
Confidence 3466777776554 2 2567999999999999999999999876332 2222 223444455556666667
Q ss_pred hhchHHHHHHHHHhcCCccccc--ccchhhhHHHHHHHHHHHhccchHHHH----HHHHHHHHh--c-c------hhhHH
Q psy2685 548 DISGQYQAALLLGRMGRGFFLL--HYFSFFFFAFLRLAFLYLITGNLEKLK----KMMKIAEIR--R-D------ISGQY 612 (992)
Q Consensus 548 ~~~~~~eaa~l~~~~g~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~r--~-d------~~~~~ 612 (992)
..+.+++|...+.+.-...... ...|.........-..|.-.++.++.. +++.+++.. . + +....
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 7777777777777633221111 112444444445555555555554422 233332211 0 1 11133
Q ss_pred HHhhhcCCHHHHHHHHHH
Q psy2685 613 QAALLLGEVGERIKILKS 630 (992)
Q Consensus 613 ~~al~lg~~~eai~i~~~ 630 (992)
..+...|+.++|++.+.+
T Consensus 177 ~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 445556777777776655
No 369
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=88.98 E-value=6.6 Score=37.64 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=68.5
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCccc
Q psy2685 488 LEDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFF 567 (992)
Q Consensus 488 i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~ 567 (992)
.++..+|-.||......|+++.|+.+|.++=..+- .+.+....+ +.+....+.++++...+.+.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l---a~~~~~~~~~~~a~~~~~~~----- 65 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--------NNVETLLKL---GKTYMDIGLPNDAIESLKKF----- 65 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHH---HHHHHHTTCHHHHHHHHHHH-----
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHH---HHHHHHCCCHHHHHHHHHHH-----
Confidence 35788999999999999999999999998632221 222222223 33334445555555544432
Q ss_pred ccccchhhhHHHHHHHHHHHhccchHHHHHH-HHHHHHhcc----hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 568 LLHYFSFFFFAFLRLAFLYLITGNLEKLKKM-MKIAEIRRD----ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 568 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~r~d----~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
+...|.........-..+.-..+.+..... .++.+...+ .......+..+|+.++|++.+.+.
T Consensus 66 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 66 -VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp -HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 222233333333333444444444443322 222222222 112345667779999998887764
No 370
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=88.83 E-value=1 Score=49.43 Aligned_cols=117 Identities=7% Similarity=0.025 Sum_probs=70.8
Q ss_pred CEEEEEECCCeEEEEECCCCeeEEEEecC-CCCeEEEEEe--cCCCEEEEE--ECCCeEEEEECCCCccccccCCcccCC
Q psy2685 106 PWILSASDDQTIRIWNWQSRNCICVLTGH-NHYVMCAQFH--PTDDIVVSA--SLDQTIRVWDISGLRKKNVAPGMGADD 180 (992)
Q Consensus 106 ~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h-~~~V~sl~fs--pdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~d 180 (992)
..+++++.||.|.-.|.++|+....+... ..++....-. +.+..++.+ +.||.+..++..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-------------- 76 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-------------- 76 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT--------------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC--------------
Confidence 36889999999999999999999998754 1222221100 112233333 5788888888754
Q ss_pred CeEEEEEccCCcceEEEEEeccCCCeEE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeeEeecc
Q psy2685 181 RQIKLWRMNDSKAWEVDIFRGHYNNVSC---VLF-----HPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRRE 244 (992)
Q Consensus 181 ~~I~iwd~~~~~~~~i~~l~~h~~~V~~---v~f-----spdg~~L~s~s~Dg~I~vwdl~~~~~l~~~~~~ 244 (992)
| ...|....+.. . ...++.. ... ...+..+++|+.++++...|..+|+.+..+...
T Consensus 77 G-~~~~~~~~~~l------v-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 77 G-LQKLPLSIRQL------V-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp E-EEEEEEEHHHH------H-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred C-cEEeeeccccc------e-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2 22343322111 0 1111211 000 013567889999999999999999998887643
No 371
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.76 E-value=5.8 Score=43.22 Aligned_cols=102 Identities=7% Similarity=0.072 Sum_probs=54.8
Q ss_pred CCCEEEEEEc-C---------CeEEEEEcCCCeEEEEeccC-CCCEEEEEEecCCCEEEEEECC----------------
Q psy2685 20 KRPWILSSLH-N---------GVIQLWDYRMNTLLEKFDEH-EGPVRGICFHNQQPIFVSGGDD---------------- 72 (992)
Q Consensus 20 dg~~Lasg~~-d---------g~I~IWd~~~g~~~~~~~~h-~~~V~~l~fspdg~~Lasgs~D---------------- 72 (992)
++..++.|+. + ..+.+||..+.+....-... ......-+...++..++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 144 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK 144 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence 4566666665 2 46889998877654322111 1111111222567777888754
Q ss_pred -----------------------CeEEEEEcCCCeEEEEEccCC-CCE-EEEEEecCCCEEEEEEC------CCeEEEEE
Q psy2685 73 -----------------------YKIKVWNYKQRKCIFTLLGHL-DYI-RTTFFHHEYPWILSASD------DQTIRIWN 121 (992)
Q Consensus 73 -----------------------g~I~VWd~~t~~~~~~l~~h~-~~V-~~i~fspd~~~L~sgs~------Dg~I~vwd 121 (992)
..+.++|..+.+....-.... ..- .+++.. ++.+++.|+. ...+.+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEE
T ss_pred cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEE
Confidence 478899988876543321111 111 222222 5556666653 34577787
Q ss_pred C
Q psy2685 122 W 122 (992)
Q Consensus 122 l 122 (992)
+
T Consensus 224 ~ 224 (357)
T 2uvk_A 224 F 224 (357)
T ss_dssp C
T ss_pred e
Confidence 6
No 372
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=88.71 E-value=8.7 Score=41.75 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=84.1
Q ss_pred eccCCHHHHHHHHHh-------cCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARV-------LED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMK 541 (992)
Q Consensus 473 L~~g~ldeA~~~a~~-------i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ 541 (992)
...|++++|.+.++. ..+ ...|..+|......|+++.|..+|.+.-+... ..........-...
T Consensus 58 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~ 132 (406)
T 3sf4_A 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR-----ELNDKVGEARALYN 132 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hcccccchHHHHHH
Confidence 667888888886543 232 45789999999999999999999887643221 11111112222333
Q ss_pred HHHHHHhhch--------------------HHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH----HHH
Q psy2685 542 IAEIRRDISG--------------------QYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK----LKK 597 (992)
Q Consensus 542 ia~i~~~~~~--------------------~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 597 (992)
++.+....+. +++|...+.+.-.........|.........-..|...++.+. +++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 5555555544322222222233333344444455555555544 333
Q ss_pred HHHHHHHhcc-------hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 598 MMKIAEIRRD-------ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 598 ~~~~~e~r~d-------~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
++.+.....+ +......+..+|+.++|++.+.+.
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3444433333 122345666778888888887653
No 373
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.67 E-value=7.5 Score=40.77 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=38.5
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.+..|++++|.+..+.. ++...|..+|......|+++.|..+|.++-
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 82 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999998887654 467889999999999999999998888764
No 374
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.53 E-value=4 Score=36.00 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=36.0
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. .+...|..+|......++++.|..+|.++-
T Consensus 12 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4568888888877543 457788889999999999999988887753
No 375
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=88.52 E-value=2.2 Score=39.89 Aligned_cols=47 Identities=9% Similarity=-0.065 Sum_probs=36.7
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|++++|.+..... .+...|..+|......++++.|..+|.++-.
T Consensus 24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888888877543 4578888899999999999999888876543
No 376
>2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling Pro; NMR {Escherichia coli}
Probab=88.52 E-value=0.18 Score=41.85 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=49.1
Q ss_pred eeeecccceEEEec--ccccceeccccccccceeeeecccccceeeeeeecccCCeEEEEcCCCCceEEEeCCcchh
Q psy2685 849 HLALLSKHTLHICN--RKMEGAGLMKSDVINNIDSSLAATEVDVQGWGDDADLGNQVYYLDRECSPHVLRIDPTEFK 923 (992)
Q Consensus 849 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (992)
+.+--++|.|++|+ +.|+.++-++| +..+-.||+ +|+ ..+--||+||+-.-.+--||.++|-
T Consensus 10 ~~kk~~~~~~vLcd~ggalkMIAEv~s------~~~~k~gDl---LsP----L~dA~YciNrn~~~tvKii~As~Ys 73 (88)
T 2jso_A 10 CNKQDNRHVLMLCDAGGAIKMIAEVKS------DFAVKVGDL---LSP----LQNALYCINREKLHTVKVLSASSYS 73 (88)
T ss_dssp CCCTTSCEEEEEEETTSSSBEEEEEEE------SSCCCTTCE---ECB----SSSSEEEEBTEEEEEEEEEEEEECC
T ss_pred eccccCeEEEEEecCCchhHHHHHHhh------ccccccccc---ccc----chhhhhhhcCCCCceEEEEeccccC
Confidence 34455788889975 78999998887 345778996 233 7889999999999889999999985
No 377
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.47 E-value=8.1 Score=40.33 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=36.5
Q ss_pred eccCCHHHHHHHHHh-------cCC----hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARV-------LED----KSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~-------i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+.++. ..+ ...|..+|......|+++.|...|.+.-
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 54 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 667888888887643 222 5588999999999999999999988763
No 378
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=88.40 E-value=6.9 Score=42.26 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=37.9
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
....|++++|.+..+.. ++...|..||......|+++.|+.+|.++-
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36778888888887654 467888999999999999999988888764
No 379
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.26 E-value=9.6 Score=40.90 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=37.5
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.+..|++++|.+..+.. .+...|..||......|+++.|..+|.++-
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 125 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36788888888877654 457788889998899999999888888654
No 380
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.24 E-value=13 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=38.0
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. .+...|..+|......|+++.|..+|.++-
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678999999888765 357789999999999999999999888764
No 381
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=88.04 E-value=11 Score=34.34 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 493 VWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 493 ~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.|..+|......|+++.|+.+|.+.-
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56677777777777777777776653
No 382
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.74 E-value=9.5 Score=46.19 Aligned_cols=109 Identities=7% Similarity=0.025 Sum_probs=62.4
Q ss_pred CCCCEEEEEEcC----CeEEEEEcCCCeEEEEe-c-----cCCCC-EEEEEEec-CCCEEEEEECC------CeEEEEEc
Q psy2685 19 PKRPWILSSLHN----GVIQLWDYRMNTLLEKF-D-----EHEGP-VRGICFHN-QQPIFVSGGDD------YKIKVWNY 80 (992)
Q Consensus 19 pdg~~Lasg~~d----g~I~IWd~~~g~~~~~~-~-----~h~~~-V~~l~fsp-dg~~Lasgs~D------g~I~VWd~ 80 (992)
.++..++.||.+ ..+.+||..+++....- . ....+ -.+++..+ ++..++.||.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998877654432 1 11111 12333333 67777787754 35788898
Q ss_pred CCCeEEEEEccCCC-CEEEEEEecCCCEEEEEECCC--eEEEEECCCCee
Q psy2685 81 KQRKCIFTLLGHLD-YIRTTFFHHEYPWILSASDDQ--TIRIWNWQSRNC 127 (992)
Q Consensus 81 ~t~~~~~~l~~h~~-~V~~i~fspd~~~L~sgs~Dg--~I~vwdl~t~~~ 127 (992)
.+.+....-..... .-.+.+...++..++.||.++ .+.+||..+..-
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence 87654432111111 111233324778888887654 689999987653
No 383
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.73 E-value=4.5 Score=44.29 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=34.0
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
...|++++|.+.++.+ ++...|..+|...+..++++.|+..+.+.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a 59 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5578888888877554 45678888888888888888888777654
No 384
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=87.71 E-value=13 Score=38.90 Aligned_cols=41 Identities=10% Similarity=-0.041 Sum_probs=28.9
Q ss_pred HHHHhhhcCCHHHHH-HHHHHcCCcHHHHHHHHhcCChHHHHHHHhhc
Q psy2685 611 QYQAALLLGEVGERI-KILKSCGQTSLAYLTAATHGLSEEAAELESNL 657 (992)
Q Consensus 611 ~~~~al~lg~~~eai-~i~~~~~~~~~A~~~A~~~~~~~~~~~~~~~~ 657 (992)
...++..+|+.++|+ +.+ ..|+.+++..+.+..+..+....
T Consensus 242 lg~~y~~~g~~~~Ai~~~~------~~Al~~~~~~~~~~~~~~~~~~~ 283 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAY------KKASFFFDILEMHAYKEALVNKI 283 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHH------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHH------HHHHHHHHHhCcHhhHHHHHHHH
Confidence 455677889999994 434 36778888888887766665543
No 385
>2rqx_A PMRD, polymyxin B resistance protein; signaling protein; NMR {Klebsiella pneumoniae}
Probab=87.47 E-value=0.32 Score=40.35 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=50.3
Q ss_pred eeeecccceEEEecccccceeccccccccceeeeecccccceeeeeeecccCCeEEEEcCCCCceEEEeCCcchh
Q psy2685 849 HLALLSKHTLHICNRKMEGAGLMKSDVINNIDSSLAATEVDVQGWGDDADLGNQVYYLDRECSPHVLRIDPTEFK 923 (992)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (992)
+.+--++|.|++..+.|+.++-++|-+ ..+-.||+ +|+ ..+--||+||+-.-.+--||.++|-
T Consensus 10 ~~kk~~~~~lvL~gGaLkMIAEv~s~~-----~~~k~GDl---LsP----L~dA~YCiNrn~~~tvKii~As~Ys 72 (89)
T 2rqx_A 10 DNASASLCRVVLQSGALEMIAEIEACR-----LRLREGDK---LTP----LADARYCLNNNPTQTLKIRNATHYS 72 (89)
T ss_dssp CSSSSSCEEEEEEETTEEEEEEEECSC-----CCCCTTCE---EEE----CSSSCEEETTCTTSEEEEEEEESCC
T ss_pred eccccCeEEEEEeCchHHHHHHHhhcc-----cccccccc---ccc----chhhhhhhcCCCCceEEEEeccccC
Confidence 344557788888999999999887742 34778996 233 6788999999999999999999995
No 386
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=87.46 E-value=7.4 Score=40.84 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=33.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC-CHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQG-NHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~-~l~iAe~aY~~~~ 518 (992)
...|++++|.+.+... ++...|..+|......| +++.|+.+|.++-
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 118 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677788887766543 35677888888888888 7888877777654
No 387
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.42 E-value=33 Score=36.58 Aligned_cols=135 Identities=8% Similarity=0.044 Sum_probs=76.8
Q ss_pred EcCCCCEEEEEEc--CCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECC--------------CeEEEEEc
Q psy2685 17 FHPKRPWILSSLH--NGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDD--------------YKIKVWNY 80 (992)
Q Consensus 17 fspdg~~Lasg~~--dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~D--------------g~I~VWd~ 80 (992)
|++++.++..... ++.|...+.. |.....+... .+--++++|.+|+-+..+ +.|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 3456777777642 5667666743 3333444322 234568999988876543 36777777
Q ss_pred CCCeEEEEEccCCCCEEEEEEecCCCEEEEEE----CCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC-
Q psy2685 81 KQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS----DDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL- 155 (992)
Q Consensus 81 ~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs----~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~- 155 (992)
..++... +.. .. +..|++++.+|+-.. ....|..-++.... ...+..+.. ..|+|+++.|.-.+.
T Consensus 96 dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g 165 (302)
T 3s25_A 96 NGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPK 165 (302)
T ss_dssp TSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTT
T ss_pred CCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCC
Confidence 6654322 221 11 236788888888766 34456666665433 344444432 346777877776554
Q ss_pred CCeEEEEECCC
Q psy2685 156 DQTIRVWDISG 166 (992)
Q Consensus 156 Dg~I~iwd~~~ 166 (992)
...|..-++.+
T Consensus 166 ~~~Iy~~~l~g 176 (302)
T 3s25_A 166 NGQLYRYDTAS 176 (302)
T ss_dssp TCCEEEEETTT
T ss_pred CceEEEEECCC
Confidence 45555555544
No 388
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.35 E-value=5.6 Score=46.58 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Q psy2685 476 GNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDIS 550 (992)
Q Consensus 476 g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~ 550 (992)
|++++|.+.+++. ++...|..||......|+++.|+.+|.++-..+. .+.+... .++......+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~---~lg~~~~~~g 71 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--------GHPEAVA---RLGRVRWTQQ 71 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--------TCHHHHH---HHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHH---HHHHHHHHCC
Confidence 4555555554432 3466777777777777777777777776654332 1122222 2222233444
Q ss_pred hHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHH-HHHHHHHhcch----hhHHHHhhhc---CCHH
Q psy2685 551 GQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKK-MMKIAEIRRDI----SGQYQAALLL---GEVG 622 (992)
Q Consensus 551 ~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~r~d~----~~~~~~al~l---g~~~ 622 (992)
.+++|...+.+. +..+|.........-..|.-.++.++..+ +.++++...+. ......+..+ |+.+
T Consensus 72 ~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 72 RHAEAAVLLQQA------SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp CHHHHHHHHHHH------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CHHHHHHHHHHH------HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH
Confidence 455555544432 12223333333333344444444444222 22333332221 1134455667 8888
Q ss_pred HHHHHHHHc
Q psy2685 623 ERIKILKSC 631 (992)
Q Consensus 623 eai~i~~~~ 631 (992)
+|++.+.+.
T Consensus 146 ~A~~~~~~a 154 (568)
T 2vsy_A 146 VLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 389
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.09 E-value=1.1 Score=41.68 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=30.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
+..|++++|.+..+.. .+...|..||......|+++.|..+|.++
T Consensus 29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5567777777666543 45667777777777777777777777654
No 390
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.04 E-value=35 Score=36.41 Aligned_cols=138 Identities=7% Similarity=-0.014 Sum_probs=82.4
Q ss_pred EEEcCCCCEEEEEEcC--------------CeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEE----CCCeEE
Q psy2685 15 LSFHPKRPWILSSLHN--------------GVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----DDYKIK 76 (992)
Q Consensus 15 iafspdg~~Lasg~~d--------------g~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs----~Dg~I~ 76 (992)
--+++++.+|+.+... +.|+..+...++. ..+.. .. +..|++++++|+-.. .+..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3468899999877653 3677777665542 22321 22 237888999888776 234566
Q ss_pred EEEcCCCeEEEEEccCCCCEEEEEEecCCCEEEEEEC-CCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEEC
Q psy2685 77 VWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASD-DQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL 155 (992)
Q Consensus 77 VWd~~t~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~-Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~ 155 (992)
..++.... ...+..+.. ..|++++..|.-.+. ...|.+-++..+.....+.+ ... ..++|++.+|+-...
T Consensus 133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEG
T ss_pred EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEc
Confidence 66665433 333433332 456788888876665 67888888876654443332 222 346688888776654
Q ss_pred CC--eEEEEECCC
Q psy2685 156 DQ--TIRVWDISG 166 (992)
Q Consensus 156 Dg--~I~iwd~~~ 166 (992)
++ .|..-++.+
T Consensus 204 ~~~~~I~~~~ldG 216 (302)
T 3s25_A 204 NRDNAIVHVNINN 216 (302)
T ss_dssp GGTTEEEEECSSS
T ss_pred CCCcEEEEEECCC
Confidence 32 344444443
No 391
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=86.96 E-value=1.1 Score=42.34 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=15.4
Q ss_pred HHHHhhhcCCHHHHHHHHHHc
Q psy2685 611 QYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 611 ~~~~al~lg~~~eai~i~~~~ 631 (992)
...+++.+|+.++|++.+.+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 345667788888888887653
No 392
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=86.84 E-value=6.9 Score=43.59 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=24.2
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
...|++++|.+..+.. .+...|..+|......|+++.|..+|.++
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555566555555432 24455555555555555555555555543
No 393
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=86.78 E-value=4 Score=43.42 Aligned_cols=44 Identities=5% Similarity=-0.061 Sum_probs=35.2
Q ss_pred eccCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-------EDKSVWERLGHAALMQGNHQIVEMCYQR 516 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------~~~~~W~~LA~~AL~~~~l~iAe~aY~~ 516 (992)
...++.++|.+..+.+ ++...|-.+|...+..|+++.|..+|.+
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 5567888888877653 2577888889999999999999988887
No 394
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=86.73 E-value=17 Score=37.87 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=40.3
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
....|++++|.+..+.. .+...|..+|......|+++.|..+|.++-
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 116 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 116 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999987654 467899999999999999999999998764
No 395
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=86.70 E-value=5 Score=40.13 Aligned_cols=143 Identities=11% Similarity=-0.010 Sum_probs=71.8
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
.+..|++++|.+..+.. ++...|..+|......|+++.|+.+|.++-+... ....... .++...
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~---~la~~~ 101 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS--------SAATAYY---GAGNVY 101 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHH---HHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------cchHHHH---HHHHHH
Confidence 35667777777666543 4588999999999999999999999987643321 1222222 223333
Q ss_pred HhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHH-HHHHHhcc----hhhHHHHhhhcCCH
Q psy2685 547 RDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMM-KIAEIRRD----ISGQYQAALLLGEV 621 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~r~d----~~~~~~~al~lg~~ 621 (992)
...+.+++|...+.+.-+ ..|.........-..|.-.++.++..... ++.+...+ .......+...|+.
T Consensus 102 ~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALR------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHTTCHHHHHHHHHHHHH------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHhccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 445555566555554211 12222223333444455555544433322 23322222 11133455566777
Q ss_pred HHHHHHHHHc
Q psy2685 622 GERIKILKSC 631 (992)
Q Consensus 622 ~eai~i~~~~ 631 (992)
++|++.+.+.
T Consensus 176 ~~A~~~~~~~ 185 (243)
T 2q7f_A 176 DEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 396
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.56 E-value=2.6 Score=51.06 Aligned_cols=150 Identities=13% Similarity=-0.036 Sum_probs=82.4
Q ss_pred cceeeceeccCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCC
Q psy2685 466 RTRLTLALECGNIDIALEAARVL-------------EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGN 532 (992)
Q Consensus 466 ~~~F~~aL~~g~ldeA~~~a~~i-------------~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~ 532 (992)
...|..++..|++++|.+.++.. ++...|..+|...+..|+++.|+.+|.++-..+ -++
T Consensus 395 ~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~ 466 (681)
T 2pzi_A 395 AASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWR 466 (681)
T ss_dssp THHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCC
T ss_pred chHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cch
Confidence 34455668899999999887653 246789999999999999999999998764221 122
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcch----
Q psy2685 533 LEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDI---- 608 (992)
Q Consensus 533 ~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~---- 608 (992)
.+....++ ......+.+++|...|.+ ++..+|....+....-..|.-.++.+.++.+.+++++.-+.
T Consensus 467 ~~a~~~lg---~~~~~~g~~~~A~~~~~~------al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 467 WRLVWYRA---VAELLTGDYDSATKHFTE------VLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp HHHHHHHH---HHHHHHTCHHHHHHHHHH------HHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHH---HHHHHcCCHHHHHHHHHH------HHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHH
Confidence 22222222 222333444444444443 11122222222222222222222222222223333332221
Q ss_pred hhHHHHhhhcCCHHHHHHHHHHcC
Q psy2685 609 SGQYQAALLLGEVGERIKILKSCG 632 (992)
Q Consensus 609 ~~~~~~al~lg~~~eai~i~~~~~ 632 (992)
......+..+|+.++|++.|.+.-
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhc
Confidence 224456788899999999999863
No 397
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=86.56 E-value=5.7 Score=39.04 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=54.3
Q ss_pred eccCCHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Q psy2685 473 LECGNIDIALEAARVLE--DKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDIS 550 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~--~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~ 550 (992)
...|++++|.+..+..- +...|..+|......|+++.|+.+|.++-.... ...... ..++......+
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~---~~lg~~~~~~~ 85 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--------HLAVAY---FQRGMLYYQTE 85 (213)
T ss_dssp HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHH---HHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHH---HHHHHHHHHcc
Confidence 56799999999988764 578999999999999999999999987643221 222222 23333344556
Q ss_pred hHHHHHHHHHh
Q psy2685 551 GQYQAALLLGR 561 (992)
Q Consensus 551 ~~~eaa~l~~~ 561 (992)
.+++|...+.+
T Consensus 86 ~~~~A~~~~~~ 96 (213)
T 1hh8_A 86 KYDLAIKDLKE 96 (213)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 66666666554
No 398
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=86.49 E-value=2.7 Score=51.23 Aligned_cols=124 Identities=11% Similarity=0.069 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcccccc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLH 570 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~ 570 (992)
...|.+||....++|+++.|+.+|.++=..+- +..+. ...++.+....+.+++|...+.+ |+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--------~~~~a---~~nLg~~l~~~g~~~eA~~~~~~------Al~ 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--------EFAAA---HSNLASVLQQQGKLQEALMHYKE------AIR 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHH---HHHHHHHHHHTTCHHHHHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHH---HHHHHHHHHHcCCHHHHHHHHHH------HHH
Confidence 56799999999999999999999997632211 22222 23344445666777777777765 334
Q ss_pred cchhhhHHHHHHHHHHHhccchHH-HHHHHHHHHHhcchhh----HHHHhhhcCCHHHHHHHHHHc
Q psy2685 571 YFSFFFFAFLRLAFLYLITGNLEK-LKKMMKIAEIRRDISG----QYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~r~d~~~----~~~~al~lg~~~eai~i~~~~ 631 (992)
.+|....+..+.-..|.-.++.++ ++.+.+++++.-+... ....+..+|+.++|++.|.+.
T Consensus 72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456655555555555665555554 3334455555544332 345667789999999988765
No 399
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=86.25 E-value=14 Score=36.05 Aligned_cols=108 Identities=15% Similarity=-0.012 Sum_probs=66.4
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHc-CCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHH
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQ-GNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEI 545 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~-~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i 545 (992)
....|++++|.+..+.. .+...|..+|...... |+++.|..+|.++-... .......-...++..
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP---------TYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST---------TCSCHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc---------CCcchHHHHHHHHHH
Confidence 36789999999887643 4688999999999999 99999999998875410 111111222333444
Q ss_pred HHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH
Q psy2685 546 RRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK 594 (992)
Q Consensus 546 ~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (992)
....+.+++|...+.+. +...|............|.-.++.++
T Consensus 123 ~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRS------LAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHHTTCHHHHHHHHHHH------HHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHH------HHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 45556666666666543 22234333344444455555555544
No 400
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=86.03 E-value=9.1 Score=44.51 Aligned_cols=179 Identities=11% Similarity=0.031 Sum_probs=92.8
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC-----c---chHHHHHHHhCCHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN-----F---DKLAFLYLITGNLEKLKKM 539 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d-----~---~~l~~L~~i~~~~ek~~~l 539 (992)
...|++++|.+..+.+ ++...|..||....+.|+++.|..+|.++-. . ..+..++...++.+...+.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5677777777776544 3566777777777777777777777776421 1 1122234444555543333
Q ss_pred HHH---------------HHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHH-HHHHH
Q psy2685 540 MKI---------------AEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKM-MKIAE 603 (992)
Q Consensus 540 a~i---------------a~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e 603 (992)
... +......+.+++|...+.+.- ..+|.-..........|.-.+..++..+. .++.+
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY------ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222 222334444555555554421 11222223333444555555555543332 23333
Q ss_pred Hh------cc-----hhhHHHHhhhcCCHHHHHHHHHHc---CC-cHHH-HH---HHHhcCChHHHHHHHhhc
Q psy2685 604 IR------RD-----ISGQYQAALLLGEVGERIKILKSC---GQ-TSLA-YL---TAATHGLSEEAAELESNL 657 (992)
Q Consensus 604 ~r------~d-----~~~~~~~al~lg~~~eai~i~~~~---~~-~~~A-~~---~A~~~~~~~~~~~~~~~~ 657 (992)
.. .+ +......+..+|+.++|++.+.+. ++ -..+ +. +....|.++.+.+..+.+
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 31 11 222456677789999999998764 21 1222 22 234456666666655543
No 401
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=85.97 E-value=6.5 Score=41.79 Aligned_cols=143 Identities=16% Similarity=0.049 Sum_probs=86.2
Q ss_pred eeccCCHHHHHHHHHhc--------CChHHHHHH------------HHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhC
Q psy2685 472 ALECGNIDIALEAARVL--------EDKSVWERL------------GHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITG 531 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i--------~~~~~W~~L------------A~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~ 531 (992)
....|++++|.+..+.. ++...|..+ |......|+++.|..+|.++-+... .
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~ 152 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV--------W 152 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------T
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------C
Confidence 36789999999988765 356677777 7899999999999999987643211 2
Q ss_pred CHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHH-HHHHHHhcchhh
Q psy2685 532 NLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKM-MKIAEIRRDISG 610 (992)
Q Consensus 532 ~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~r~d~~~ 610 (992)
..+. ...++......+.+++|...+.+.- ...|.........-..|...++.++.... .++++...+...
T Consensus 153 ~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 223 (359)
T 3ieg_A 153 DAEL---RELRAECFIKEGEPRKAISDLKAAS------KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223 (359)
T ss_dssp CHHH---HHHHHHHHHHTTCHHHHHHHHHHHH------TTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHH---HHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence 2222 2333444455666666666666532 22344444555555566666665553332 233333222211
Q ss_pred ----------------HHHHhhhcCCHHHHHHHHHHc
Q psy2685 611 ----------------QYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 611 ----------------~~~~al~lg~~~eai~i~~~~ 631 (992)
....++..|+.++|++.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 244567789999998888764
No 402
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.91 E-value=27 Score=35.70 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHh---cCChHHHHHHHHHHHH----cCCHHHHHHHHHHc
Q psy2685 474 ECGNIDIALEAARV---LEDKSVWERLGHAALM----QGNHQIVEMCYQRT 517 (992)
Q Consensus 474 ~~g~ldeA~~~a~~---i~~~~~W~~LA~~AL~----~~~l~iAe~aY~~~ 517 (992)
..|++++|.+..+. ..+...|..||..... .++++.|..+|.+.
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 34555555544432 3445556666666666 66666666666554
No 403
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=85.78 E-value=13 Score=38.88 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=31.9
Q ss_pred eccC-CHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECG-NIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g-~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...| ++++|.+..+.. .+...|..+|......|+++.|..+|.++-
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5566 777777766543 245677788888888888888877777653
No 404
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.72 E-value=18 Score=40.13 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.3
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|++++|.+..+.. ++...|..||......|+++.|..+|.++-.
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888888877543 3577888888888888888888888887644
No 405
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.53 E-value=5.8 Score=42.92 Aligned_cols=47 Identities=13% Similarity=-0.043 Sum_probs=40.9
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|++++|.+..+.. ++...|..||......|+++.|+.+|.++-.
T Consensus 110 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 6789999999988654 4688999999999999999999999988643
No 406
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=85.46 E-value=23 Score=38.60 Aligned_cols=159 Identities=12% Similarity=-0.017 Sum_probs=88.8
Q ss_pred eccCCHHHHHHHHH-------hcCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHH
Q psy2685 473 LECGNIDIALEAAR-------VLED-----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMM 540 (992)
Q Consensus 473 L~~g~ldeA~~~a~-------~i~~-----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la 540 (992)
...|++++|.+... ...+ ...+..||......|+++.|+.+|.++-+... ..........-..
T Consensus 154 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE-----AEKQPQLMGRTLY 228 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HcCChHHHHHHHH
Confidence 56677777776553 3332 35788999999999999999999987643211 1111111222333
Q ss_pred HHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH----HHHHHHHHHHhcchh------h
Q psy2685 541 KIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK----LKKMMKIAEIRRDIS------G 610 (992)
Q Consensus 541 ~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~r~d~~------~ 610 (992)
.++......+.+++|...+.+.-+........|....+....-..|.-.++.++ +++++.+....+|.. .
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555566666666666665332211111224444455555556665555554 333344433333321 1
Q ss_pred HHHHhhhcCC---HHHHHHHHHHcCCcHH
Q psy2685 611 QYQAALLLGE---VGERIKILKSCGQTSL 636 (992)
Q Consensus 611 ~~~~al~lg~---~~eai~i~~~~~~~~~ 636 (992)
....+...|+ +++|++++.+.+..+.
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~~~~~ 337 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKMLYAD 337 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence 2344555677 8888888888876654
No 407
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.00 E-value=5 Score=42.41 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=38.2
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
.+..|++++|.+..+.. ++...|..||...+..|+++.|+.+|.++-.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 36788888888877644 4677888888888888888888888887754
No 408
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=84.83 E-value=3.7 Score=42.14 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=30.5
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. .+...|..+|......|+++.|..+|.++-
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777777766543 345577777777777777777777776553
No 409
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=84.76 E-value=5.5 Score=42.47 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 476 GNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 476 g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
+++++|.+. +.+.|......++++.|..+|.++-+
T Consensus 30 ~~~~~A~~~---------~~~a~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 30 PDYDSAASE---------YAKAAVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp CCHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666554 34556777777888888887776543
No 410
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.61 E-value=0.062 Score=60.86 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=99.5
Q ss_pred eccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHc----cCcchHHHHHHHhCCHHHHHHHHHHHH--HH
Q psy2685 473 LECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRT----KNFDKLAFLYLITGNLEKLKKMMKIAE--IR 546 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~----~d~~~l~~L~~i~~~~ek~~~la~ia~--i~ 546 (992)
+.+|++..|.+.|++-++...|+..-..|++.+++..|..|--.+ ...+.|.-.|+-+|..+.+..+.+.+- -.
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 889999999999999999999999999999999999999987643 355566666666776666555555441 11
Q ss_pred HhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHHH
Q psy2685 547 RDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIK 626 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~ 626 (992)
+..+.|-|.+.+|.+-. +|++-..++++.. -=++-+-+.
T Consensus 261 AHmGmFTELaILYsKY~----------------------------PeKlmEHlklf~s-------------riNipKvir 299 (624)
T 3lvg_A 261 AHMGMFTELAILYSKFK----------------------------PQKMREHLELFWS-------------RVNIPKVLR 299 (624)
T ss_dssp CCHHHHHHHHHHHHSSC----------------------------TTHHHHHHTTSSS-------------SSCCTTTHH
T ss_pred hhHHHHHHHHHHHHhcC----------------------------HHHHHHHHHHHHH-------------hccHHHHHH
Confidence 45566666677666532 1121111121111 125667788
Q ss_pred HHHHcCCcHHHHHHHHhcCChHHHHH
Q psy2685 627 ILKSCGQTSLAYLTAATHGLSEEAAE 652 (992)
Q Consensus 627 i~~~~~~~~~A~~~A~~~~~~~~~~~ 652 (992)
.|.+...|+++.-+..+|.-+++|..
T Consensus 300 acE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 88899999999999999999998763
No 411
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=84.57 E-value=6.8 Score=40.22 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=40.2
Q ss_pred eccCCHHHHHHHHHhcC-----C---hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVLE-----D---KSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~-----~---~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+..|++++|.+..+.+- + ...|-.||......|+++.|...|.+.-
T Consensus 26 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 26 YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 67899999999987652 3 6789999999999999999999998764
No 412
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=84.41 E-value=15 Score=37.94 Aligned_cols=136 Identities=16% Similarity=0.046 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHh--CCHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcccc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLIT--GNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFL 568 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~--~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~a 568 (992)
...|..||......|+++.|+.+|.++-.. ..... .......-...++......+.+++|...+.+.-+....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALED-----LEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999876432 11222 23334444455555566667777777776654322211
Q ss_pred c--ccchhhhHHHHHHHHHHHhccchHHHHHH-HHHHHHh-----cc-------hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 569 L--HYFSFFFFAFLRLAFLYLITGNLEKLKKM-MKIAEIR-----RD-------ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 569 l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~r-----~d-------~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
. ...|.........-..|.-.++.+..... .+++++. .+ +......+..+|+.++|++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 22344445555555566655555553332 1222221 11 122345667779999998887765
No 413
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=84.37 E-value=3.6 Score=39.44 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=33.4
Q ss_pred eccCCHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARV-----LEDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~-----i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+..|++++|.+.++. -.+...|..+|...+..|+++.|+.+|.++-
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 71 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL 71 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777777665543 2468899999999999999999999998764
No 414
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=84.22 E-value=2 Score=46.42 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=42.3
Q ss_pred eccCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 473 LECGNIDIALEAARVL-------EDKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
...|++++|++.+... .+......+++.++..|+.+.|++.++++.+.
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5579999999999988 77889999999999999999999999876543
No 415
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=84.04 E-value=12 Score=39.98 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=40.6
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
....|++++|.+..+.. ++...|..||......|+++.|..+|.++-
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37789999999988643 468899999999999999999999998754
No 416
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.92 E-value=3.3 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 489 EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 489 ~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
++...|-.||...+..|+++.|+.+|.++-
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELV 34 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467789999999999999999999997763
No 417
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.86 E-value=2 Score=39.36 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 492 SVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 492 ~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
..|+.||..+..+|+++.|+.+|.++=
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al 35 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAI 35 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999999999999998763
No 418
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=83.74 E-value=8.4 Score=38.24 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=53.1
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHH----------------HHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHh
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWER----------------LGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLIT 530 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~----------------LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~ 530 (992)
.+..|++++|.+..+.. ++...|-. ||......|+++.|+.+|.+.=..+-
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------- 85 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-------- 85 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------
Confidence 36789999999887654 24567888 99999999999999999987532211
Q ss_pred CCHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q psy2685 531 GNLEKLKKMMKIAEIRRDISGQYQAALLLGR 561 (992)
Q Consensus 531 ~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~ 561 (992)
++.+... .++.+....+.+++|...+.+
T Consensus 86 ~~~~~~~---~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 86 NNVDCLE---ACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp TCHHHHH---HHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHHHHcCCHHHHHHHHHH
Confidence 2222222 334444555666666666654
No 419
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.70 E-value=5.3 Score=40.87 Aligned_cols=46 Identities=7% Similarity=-0.027 Sum_probs=34.5
Q ss_pred eccCCHHHHHHHHHhcC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVLE---------DKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~---------~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+..- +...|..+|......|+++.|..+|.++-
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34577888887775432 25678889999999999999988887754
No 420
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=83.65 E-value=7.7 Score=35.23 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 492 SVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 492 ~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
..|..+|..++++|+++.|+.+|.++=
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al 40 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAV 40 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999999999999998763
No 421
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.59 E-value=24 Score=36.97 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=49.6
Q ss_pred eccCCHHHHHHHHH-------hcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHH-HHHHH
Q psy2685 473 LECGNIDIALEAAR-------VLED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEK-LKKMM 540 (992)
Q Consensus 473 L~~g~ldeA~~~a~-------~i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek-~~~la 540 (992)
...|++++|.+... ...+ ...|..+|......|+++.|..+|.++-. ++.-.++... ..-..
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ------IFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HHHHcCCHHHHHHHHH
Confidence 45678887776653 2333 45889999999999999999999886633 2222333332 12233
Q ss_pred HHHHHHHhh-chHHHHHHHHHh
Q psy2685 541 KIAEIRRDI-SGQYQAALLLGR 561 (992)
Q Consensus 541 ~ia~i~~~~-~~~~eaa~l~~~ 561 (992)
.++.+.... +.+++|...+.+
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHH
Confidence 344434443 555555555543
No 422
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=83.41 E-value=14 Score=36.64 Aligned_cols=120 Identities=13% Similarity=-0.035 Sum_probs=67.8
Q ss_pred eccCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL------EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i------~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
+..|++++|.+..... .+...|-.+|......|+++.|+.+|.++-..+. +...-...++.+.
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~ 86 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-----------NLANAYIGKSAAY 86 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------SHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-----------chHHHHHHHHHHH
Confidence 6678888888766422 4567788888888888888888888876642221 1122222334334
Q ss_pred HhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHHH
Q psy2685 547 RDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIK 626 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~ 626 (992)
...+.+++|...+.+.-. .+|. ++. .......+ +......+..+|+.++|++
T Consensus 87 ~~~~~~~~A~~~~~~al~------~~p~-------~~~---------~~~~~~~~------~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIK------AVPG-------NAT---------IEKLYAIY------YLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHTTCHHHHHHHHHHHHH------HSTT-------CHH---------HHHHHHHH------HHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHH------HCCC-------cHH---------HHHHHHHH------HHHHhHHHHHhccHHHHHH
Confidence 445555555555543211 1111 110 00000011 1224456678899999999
Q ss_pred HHHHc
Q psy2685 627 ILKSC 631 (992)
Q Consensus 627 i~~~~ 631 (992)
.+.+.
T Consensus 139 ~~~~a 143 (228)
T 4i17_A 139 NYKHA 143 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
No 423
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=83.35 E-value=4.8 Score=40.54 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=39.3
Q ss_pred eccCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. .+...|..+|......|+++.|..+|.++-
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5678999998877433 778999999999999999999999998754
No 424
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=83.12 E-value=9.1 Score=41.76 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=39.0
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.+..|++++|....+.. .+...|..||......|+++.|+.+|.++-
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46789999998877533 457789999999999999999999998763
No 425
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=82.61 E-value=4.2 Score=42.90 Aligned_cols=78 Identities=9% Similarity=-0.022 Sum_probs=54.1
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
...|++++|.+..... ++...|..+|...+..|+++.|+..|.++-..+- +..... ..++....
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~---~~lg~~~~ 83 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAH---FFLGQCQL 83 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------TCHHHH---HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHH---HHHHHHHH
Confidence 5679999999877543 4789999999999999999999999998765432 222222 22333344
Q ss_pred hhchHHHHHHHHHh
Q psy2685 548 DISGQYQAALLLGR 561 (992)
Q Consensus 548 ~~~~~~eaa~l~~~ 561 (992)
..+.+++|...+.+
T Consensus 84 ~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 84 EMESYDEAIANLQR 97 (281)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55566666655554
No 426
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=82.39 E-value=20 Score=38.99 Aligned_cols=151 Identities=11% Similarity=-0.008 Sum_probs=86.2
Q ss_pred eccCCHHHHHHHHH-------hcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHH
Q psy2685 473 LECGNIDIALEAAR-------VLED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMK 541 (992)
Q Consensus 473 L~~g~ldeA~~~a~-------~i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ 541 (992)
...|++++|.+... ..++ ...+..||......|+++.|+.+|.++-+. ..-.+.+....-+..
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV------SREKVPDLLPKVLFG 266 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HHHHCGGGHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHhhCChhHHHHHHH
Confidence 66788888776553 3333 347888999999999999999999877432 111122222344445
Q ss_pred HHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhh-------HHHH
Q psy2685 542 IAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISG-------QYQA 614 (992)
Q Consensus 542 ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~-------~~~~ 614 (992)
++.+....+.+++|...+.+.-...... ..|.+.......-.+|....+.+..++++.+++..++... ....
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTT-CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5555666677777777666532211110 1233333333334455555566667777777766554332 2233
Q ss_pred hhhcCCHHHHHHHHHH
Q psy2685 615 ALLLGEVGERIKILKS 630 (992)
Q Consensus 615 al~lg~~~eai~i~~~ 630 (992)
+...|+.++|++.+.+
T Consensus 346 y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 346 FESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 4444666666655544
No 427
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=82.23 E-value=14 Score=39.28 Aligned_cols=82 Identities=10% Similarity=0.068 Sum_probs=47.6
Q ss_pred eccCCHHHHHHHHH-------hcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHH-HHHHH
Q psy2685 473 LECGNIDIALEAAR-------VLED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEK-LKKMM 540 (992)
Q Consensus 473 L~~g~ldeA~~~a~-------~i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek-~~~la 540 (992)
...|++++|.+... ...+ ...|.++|......|+++.|..+|.+.-+. +.-.++... ..-..
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l------~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM------YVENGTPDTAAMALD 120 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------HHTTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------HHHcCCHHHHHHHHH
Confidence 45678887776553 3333 347888999999999999999888765322 222233322 22233
Q ss_pred HHHHHHHhhchHHHHHHHHHh
Q psy2685 541 KIAEIRRDISGQYQAALLLGR 561 (992)
Q Consensus 541 ~ia~i~~~~~~~~eaa~l~~~ 561 (992)
.++.+... +.+++|...+.+
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHH
Confidence 34443334 555555555543
No 428
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=82.15 E-value=15 Score=38.73 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=44.2
Q ss_pred eeccCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 472 ALECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
....|++++|.+.++.-.+...|..+|...+..|+.+.|+..|.++-.
T Consensus 111 ~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 378899999999999988899999999999999999999999998753
No 429
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=81.57 E-value=12 Score=35.83 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=42.8
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
.+..|++++|...++.. ++...|..||...+..|+++.|+.+|.+.-..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 46789999999999765 46889999999999999999999999987543
No 430
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=81.39 E-value=7.8 Score=38.71 Aligned_cols=83 Identities=10% Similarity=-0.127 Sum_probs=57.0
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHH----HHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKL----KKMMKIA 543 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~----~~la~ia 543 (992)
...|++++|.+.++.. ++...|..+|......|+++.|+.+|.++-.... .+..-. .-...++
T Consensus 53 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~g 124 (228)
T 4i17_A 53 DNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--------GNATIEKLYAIYYLKEG 124 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHH
T ss_pred HHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHHh
Confidence 7789999999987644 3577899999999999999999999987643221 222111 1122334
Q ss_pred HHHHhhchHHHHHHHHHhcC
Q psy2685 544 EIRRDISGQYQAALLLGRMG 563 (992)
Q Consensus 544 ~i~~~~~~~~eaa~l~~~~g 563 (992)
......+.+++|...+.+.-
T Consensus 125 ~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 125 QKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 44456677777777777543
No 431
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=80.17 E-value=14 Score=31.59 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|..+|..++..|+++.|..+|.+.-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 31 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAI 31 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3456677777777777777777776653
No 432
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=80.02 E-value=23 Score=38.57 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=78.2
Q ss_pred eccCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCC-H-HHHHHH
Q psy2685 473 LECGNIDIALEAARVL-------ED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGN-L-EKLKKM 539 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~-~-ek~~~l 539 (992)
...|++++|.+..+.. .+ ...+..||......|+.+.|...|.++-+... -.+. . ....-.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~ 185 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ------NHPLYSIRTIQSL 185 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------TSTTCHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH------hCCCchhhHHHHH
Confidence 6789999999887543 22 45788999999999999999998887543211 0011 1 112223
Q ss_pred HHHHHHHHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHH----HHHHHHHHHHhcchhh-----
Q psy2685 540 MKIAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEK----LKKMMKIAEIRRDISG----- 610 (992)
Q Consensus 540 a~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~r~d~~~----- 610 (992)
..++.+....+.+++|...+.+.-+........+....+..+.-..|.-.++.++ +++++.+++..++...
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 3444445555666666665554322111111111112222222334444444433 3333343333333221
Q ss_pred -HHHHhhhcCCHHHHHHHHHH
Q psy2685 611 -QYQAALLLGEVGERIKILKS 630 (992)
Q Consensus 611 -~~~~al~lg~~~eai~i~~~ 630 (992)
....+..+|+.++|++.+.+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 23445556777777766654
No 433
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=79.81 E-value=14 Score=32.97 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
+...|..+|..++..|+++.|+.+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a 35 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRA 35 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4556777777777777777777777654
No 434
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.93 E-value=41 Score=37.02 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=76.9
Q ss_pred CCCEEEEEEcC-CCCEEEEEEcCC----eEEEEEcCCCeEEEEecc--------------CCCCEEEEEEecC--CCEEE
Q psy2685 9 SARVKGLSFHP-KRPWILSSLHNG----VIQLWDYRMNTLLEKFDE--------------HEGPVRGICFHNQ--QPIFV 67 (992)
Q Consensus 9 ~~~V~~iafsp-dg~~Lasg~~dg----~I~IWd~~~g~~~~~~~~--------------h~~~V~~l~fspd--g~~La 67 (992)
...|.+|++.| +...|.+++..| .|...+ ..|+.-..+.. +...|.+++++|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999998 333455555555 444432 33432222211 1124778999873 34566
Q ss_pred EEECCCeEEEEEcCCCeEEEEEcc-------------------CCCCEEEEEEecC-CCEEEEEECCCeEEEEECCCCee
Q psy2685 68 SGGDDYKIKVWNYKQRKCIFTLLG-------------------HLDYIRTTFFHHE-YPWILSASDDQTIRIWNWQSRNC 127 (992)
Q Consensus 68 sgs~Dg~I~VWd~~t~~~~~~l~~-------------------h~~~V~~i~fspd-~~~L~sgs~Dg~I~vwdl~t~~~ 127 (992)
++...+.|...+ ..++....+.. ....+.+|.++|. ...+..++.++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 665556554432 22332222211 1235788999874 34455555555444433 22332
Q ss_pred EEEEec-----C--------CCCeEEEEEecCC-CEEEEEECCCeEEEEE
Q psy2685 128 ICVLTG-----H--------NHYVMCAQFHPTD-DIVVSASLDQTIRVWD 163 (992)
Q Consensus 128 i~~l~~-----h--------~~~V~sl~fspdg-~~L~sgs~Dg~I~iwd 163 (992)
...+.. + ...+.++.++|+. ..+..++..+ |...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 222211 0 1348899999863 5666666544 44443
No 435
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=78.80 E-value=35 Score=32.57 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=52.3
Q ss_pred eccCCHHHHHHHHHh-------cCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCH-HHHHHHH
Q psy2685 473 LECGNIDIALEAARV-------LED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNL-EKLKKMM 540 (992)
Q Consensus 473 L~~g~ldeA~~~a~~-------i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~-ek~~~la 540 (992)
...|++++|.+.++. ..+ ...|..||......|+++.|+.+|.+.-+.. ....... ....-..
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL-----ASLPEDPLAASANAY 111 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHSCCCHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHcCccHHHHHHHHH
Confidence 567788777766643 223 4578999999999999999999998764331 1111122 2223334
Q ss_pred HHHHHHHhhchHHHHHHHHHh
Q psy2685 541 KIAEIRRDISGQYQAALLLGR 561 (992)
Q Consensus 541 ~ia~i~~~~~~~~eaa~l~~~ 561 (992)
.++......+.+++|...+.+
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 445555556666666666654
No 436
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=78.19 E-value=16 Score=36.98 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=40.7
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|++++|.+..+.. ++...|..||......|+++.|..+|.++-.
T Consensus 54 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 6789999999887653 4689999999999999999999999987643
No 437
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=78.09 E-value=16 Score=32.40 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|..+|..++..|+++.|..+|.+.-
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al 31 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMI 31 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3578899999999999999999998763
No 438
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=78.08 E-value=20 Score=35.82 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=38.8
Q ss_pred eeccCCHHHHHHHHHhcC-----C---hHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 472 ALECGNIDIALEAARVLE-----D---KSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i~-----~---~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
.+..|++++|.+..+.+- + +..|-.+|......|+++.|..+|.+.
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 367899999999887652 2 368999999999999999999999875
No 439
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=77.98 E-value=8.9 Score=34.45 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=56.0
Q ss_pred ceeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHH
Q psy2685 471 LALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEI 545 (992)
Q Consensus 471 ~aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i 545 (992)
..+..|++++|.+.++.. ++...|..||......|+++.|+.+|.++-..+- ...+... .++..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~---~la~~ 94 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHA---ALAVS 94 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHH---HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHH---HHHHH
Confidence 347889999999988654 5789999999999999999999999987643322 2222222 33333
Q ss_pred HHhhchHHHHHHHHHh
Q psy2685 546 RRDISGQYQAALLLGR 561 (992)
Q Consensus 546 ~~~~~~~~eaa~l~~~ 561 (992)
....+.+++|...+.+
T Consensus 95 ~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 95 HTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 4455566666666654
No 440
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.64 E-value=25 Score=36.80 Aligned_cols=34 Identities=3% Similarity=0.091 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 477 NIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 477 ~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
++++|.+... ..|......|+++.|..+|.++-+
T Consensus 32 ~~~~A~~~~~---------~a~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 32 KFEEAADLCV---------QAATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp HHHHHHHHHH---------HHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4777776654 447777889999999999887643
No 441
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.64 E-value=18 Score=32.48 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
+...|..+|..++..++++.|..+|.++-..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 57 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL 57 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556777888888888888888888776543
No 442
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=76.79 E-value=19 Score=37.74 Aligned_cols=170 Identities=11% Similarity=-0.019 Sum_probs=92.5
Q ss_pred eceeccCCHHHHHHHHHhcCC-----h-----HHHHH-HHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCH-HHHH
Q psy2685 470 TLALECGNIDIALEAARVLED-----K-----SVWER-LGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNL-EKLK 537 (992)
Q Consensus 470 ~~aL~~g~ldeA~~~a~~i~~-----~-----~~W~~-LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~-ek~~ 537 (992)
...+..|++++|.+.++.... + ..|-. +|...+..++++.|..+|.++-+...- ..+. ....
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~------~~~~~~~~~ 156 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT------GIDVYQNLY 156 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC------CSCTTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc------cccHHHHHH
Confidence 345778999999998876422 1 23444 888888888999999988876431100 0111 1111
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhcCCccccc-ccchhhhHHHHHHHHHHHhccchHHH----HHHHHHHHHhcch----
Q psy2685 538 KMMKIAEIRRDISGQYQAALLLGRMGRGFFLL-HYFSFFFFAFLRLAFLYLITGNLEKL----KKMMKIAEIRRDI---- 608 (992)
Q Consensus 538 ~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~r~d~---- 608 (992)
-...++.+....+.+++|...+.+.-+..... ...+.........-..|.-.++.++. ++++.+....++.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 23344444455555666666555533222112 12233333444444555555555542 2333443333222
Q ss_pred ---hhHHHHhhhcC-CHHHHHHHHHHcCCcHHHHHHHHhcCChHHHH
Q psy2685 609 ---SGQYQAALLLG-EVGERIKILKSCGQTSLAYLTAATHGLSEEAA 651 (992)
Q Consensus 609 ---~~~~~~al~lg-~~~eai~i~~~~~~~~~A~~~A~~~~~~~~~~ 651 (992)
.....++..+| +.++|++.+.+ |+.+++..|....+.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~------Al~i~~~~~~~~~~~ 277 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK------ASFFFDILEMHAYKE 277 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH------HHHHHHHTTCTGGGG
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHH------HHHHHHHhCCHHHHH
Confidence 22455667778 46899888755 778888877665443
No 443
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=76.78 E-value=49 Score=33.68 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHH---hcCChHHHHHHHHHHHH----cCCHHHHHHHHHHccC
Q psy2685 475 CGNIDIALEAAR---VLEDKSVWERLGHAALM----QGNHQIVEMCYQRTKN 519 (992)
Q Consensus 475 ~g~ldeA~~~a~---~i~~~~~W~~LA~~AL~----~~~l~iAe~aY~~~~d 519 (992)
.+++++|.+..+ ...+...|..||..... .++++.|..+|.+.-+
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 788888877664 44688999999999999 9999999999987643
No 444
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=76.74 E-value=18 Score=34.83 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
.-..|..+|......|+++.|..+|.+.=.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~ 39 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAME 39 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999997643
No 445
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=76.64 E-value=13 Score=32.80 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|..+|..++..++++.|..+|.++-+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 44 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK 44 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677777777777777777766543
No 446
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=76.23 E-value=16 Score=34.25 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|..+|..++..|+++.|+.+|.++-.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 39 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS 39 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999987643
No 447
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.97 E-value=22 Score=43.00 Aligned_cols=107 Identities=10% Similarity=0.063 Sum_probs=62.4
Q ss_pred CCCEEEEEEcC------CeEEEEEcCCCeEEEEeccCCCCE-EEEEEecCCCEEEEEECCC--eEEEEEcCCCeEEEEEc
Q psy2685 20 KRPWILSSLHN------GVIQLWDYRMNTLLEKFDEHEGPV-RGICFHNQQPIFVSGGDDY--KIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 20 dg~~Lasg~~d------g~I~IWd~~~g~~~~~~~~h~~~V-~~l~fspdg~~Lasgs~Dg--~I~VWd~~t~~~~~~l~ 90 (992)
++..++.||.+ ..+.+||..+.+....-....... .+.+...++..++.|+.++ .+.+||..+++....-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 67777777653 357889988765443211111111 1222224788888887655 68999998876543221
Q ss_pred -----cCCCCEEEEEEecC-CCEEEEEEC--C-----CeEEEEECCCCe
Q psy2685 91 -----GHLDYIRTTFFHHE-YPWILSASD--D-----QTIRIWNWQSRN 126 (992)
Q Consensus 91 -----~h~~~V~~i~fspd-~~~L~sgs~--D-----g~I~vwdl~t~~ 126 (992)
........+.+..+ +..++.||. + ..+.+||+.+..
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 01111223555555 667777765 2 468899998776
No 448
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=75.27 E-value=33 Score=38.85 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=34.2
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. ++...|..+|......|+++.|+.+|.++-
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6677888887776543 457778888888888888888888777653
No 449
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=75.26 E-value=5.8 Score=37.25 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=32.2
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. ++...|..||......|+++.|+.+|.++-
T Consensus 42 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 5667777777766433 457777777777777777777777776653
No 450
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=75.17 E-value=9.6 Score=32.31 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=25.2
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRT 517 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~ 517 (992)
...|++++|.+..+.. .+...|..+|......++++.|..+|.++
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4456666665555332 34555666666666666666666555543
No 451
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=74.99 E-value=4.1 Score=46.87 Aligned_cols=80 Identities=10% Similarity=-0.059 Sum_probs=54.4
Q ss_pred ceeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHH
Q psy2685 471 LALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEI 545 (992)
Q Consensus 471 ~aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i 545 (992)
.....|++++|.+..++. ++...|..+|....+.++++.|+.+|.++-..+- ...+.. ..++..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~---~~lg~~ 83 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGY---YRRAAS 83 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHH---HHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHH---HHHHHH
Confidence 346789999999887643 4688999999999999999999999988744322 222222 233333
Q ss_pred HHhhchHHHHHHHHHh
Q psy2685 546 RRDISGQYQAALLLGR 561 (992)
Q Consensus 546 ~~~~~~~~eaa~l~~~ 561 (992)
....+.+++|...+.+
T Consensus 84 ~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 84 NMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 4455556666655553
No 452
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=74.81 E-value=9.3 Score=43.18 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=15.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHc
Q psy2685 611 QYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 611 ~~~~al~lg~~~eai~i~~~~ 631 (992)
....+..+|+.++|++.+.+.
T Consensus 455 la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 345667778888888887754
No 453
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.72 E-value=98 Score=33.36 Aligned_cols=155 Identities=7% Similarity=0.042 Sum_probs=96.1
Q ss_pred CCEEEE-EEcC--CCCEEEEEEcCCeEEEEEcCC-------CeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q psy2685 10 ARVKGL-SFHP--KRPWILSSLHNGVIQLWDYRM-------NTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79 (992)
Q Consensus 10 ~~V~~i-afsp--dg~~Lasg~~dg~I~IWd~~~-------g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd 79 (992)
..|.++ ...+ +..++++.+.+|.|+.-.+.. |.....++. .+.+..+........++..+.+|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 445555 4442 577999999999999987643 222223333 34566666666667888889999988887
Q ss_pred cC--C---------CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCC-------eeEEEE--ecCCCCeE
Q psy2685 80 YK--Q---------RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSR-------NCICVL--TGHNHYVM 139 (992)
Q Consensus 80 ~~--t---------~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~-------~~i~~l--~~h~~~V~ 139 (992)
.. . |.....+ ...+.|.++...+++..++..+..|.++.-.+..- +-+..+ ..-.+.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 65 2 1111112 23456777777666778999999999998876421 112222 22134455
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 140 CAQFHPTDDIVVSASLDQTIRVWDISG 166 (992)
Q Consensus 140 sl~fspdg~~L~sgs~Dg~I~iwd~~~ 166 (992)
.+....+...++..+.+|.+.-++...
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 555444555677777788877777643
No 454
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=74.50 E-value=10 Score=35.41 Aligned_cols=46 Identities=0% Similarity=-0.161 Sum_probs=36.8
Q ss_pred eccCCHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVLE-----DKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~-----~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.+.|++++|.+..+..- ++..|-.||....+.|+++.|+.+|.++=
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al 58 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI 58 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678889988776543 25577889999999999999999998763
No 455
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=73.46 E-value=30 Score=29.98 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|..+|..+...|+++.|..+|.++-.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 32 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE 32 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45788999999999999999999987643
No 456
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=72.95 E-value=35 Score=30.63 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=49.0
Q ss_pred eccCCHHHHHHHHHhc-------CCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHH-HHHHHH
Q psy2685 473 LECGNIDIALEAARVL-------EDK----SVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLE-KLKKMM 540 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-------~~~----~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~e-k~~~la 540 (992)
...|++++|.+.++.. .++ ..|..+|......|+++.|...|.++-+... .. +... ...-..
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~-~~~~~~~~~~~ 93 (164)
T 3ro3_A 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR-----QL-KDRAVEAQSCY 93 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HT-TCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----Hh-CCcHHHHHHHH
Confidence 4567777777666432 222 4789999999999999999999987643211 11 2222 122233
Q ss_pred HHHHHHHhhchHHHHHHHHH
Q psy2685 541 KIAEIRRDISGQYQAALLLG 560 (992)
Q Consensus 541 ~ia~i~~~~~~~~eaa~l~~ 560 (992)
.++......+.+++|...+.
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44444455555555555554
No 457
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=72.95 E-value=23 Score=40.75 Aligned_cols=85 Identities=7% Similarity=-0.068 Sum_probs=64.7
Q ss_pred eeccCCHHHHHHHHHhc----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHH--hCCHHHH
Q psy2685 472 ALECGNIDIALEAARVL----------ED---KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLI--TGNLEKL 536 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i----------~~---~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i--~~~~ek~ 536 (992)
.-..|++++|..+++.. ++ -....+||.....+|+++.|+..|.++=+. ..+. .+.++-.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----~~~~lG~~Hp~~a 393 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG-----YMKLYHHNNAQLG 393 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHSCTTCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHH
Confidence 34689999998877433 11 457889999999999999999999876332 2233 2456777
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHh
Q psy2685 537 KKMMKIAEIRRDISGQYQAALLLGR 561 (992)
Q Consensus 537 ~~la~ia~i~~~~~~~~eaa~l~~~ 561 (992)
..+..+|.+....+.+++|..++.+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888999999888875
No 458
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.85 E-value=22 Score=37.62 Aligned_cols=144 Identities=11% Similarity=0.028 Sum_probs=74.6
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeEEEEeccCCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEc
Q psy2685 11 RVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLL 90 (992)
Q Consensus 11 ~V~~iafspdg~~Lasg~~dg~I~IWd~~~g~~~~~~~~h~~~V~~l~fspdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 90 (992)
.|..++-..... ++. . ||.|..|-....-.+..-......|..++..... .++. . ||.|..|-......+..-.
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 466666654332 333 4 8999999754321111111123457777665443 2333 4 8999999754321111111
Q ss_pred cCCCCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCeEEEEEecCCCEEEEEECCCeEEEEECCC
Q psy2685 91 GHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 166 (992)
Q Consensus 91 ~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~Dg~I~iwd~~~ 166 (992)
.-...|..++..... .+.-+ ||.|..|-....-.+..-......|..++..... .++ -+ ||.|..|-...
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNY 168 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCT
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCC
Confidence 123467777766543 33445 9999999765422211111123456666654332 233 23 78888886543
No 459
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=70.38 E-value=20 Score=41.75 Aligned_cols=100 Identities=13% Similarity=-0.016 Sum_probs=66.8
Q ss_pred EEEEEEecCCCEEEEEEC-CCeEEEEEcCC------CeE-------EEEEccCCCCEEEEEEecCCCEEEEEECCCeEEE
Q psy2685 54 VRGICFHNQQPIFVSGGD-DYKIKVWNYKQ------RKC-------IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRI 119 (992)
Q Consensus 54 V~~l~fspdg~~Lasgs~-Dg~I~VWd~~t------~~~-------~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~v 119 (992)
..++..+|||++++.++. +.++.|+|++. ++. ..... -.-.....+|.++|.-..+..-|..|.-
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence 457889999998887665 78999999863 111 22222 2334677899999955556668999999
Q ss_pred EECCCC----------eeEEEEecCCCCeEEEEE------ecCCCEEEEEEC
Q psy2685 120 WNWQSR----------NCICVLTGHNHYVMCAQF------HPTDDIVVSASL 155 (992)
Q Consensus 120 wdl~t~----------~~i~~l~~h~~~V~sl~f------spdg~~L~sgs~ 155 (992)
||+... ..+..+.-|-.+- .+.- .|+|++|++...
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEES
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecc
Confidence 999752 3455555554322 2222 568899998753
No 460
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.18 E-value=1.2e+02 Score=32.96 Aligned_cols=138 Identities=7% Similarity=-0.130 Sum_probs=69.2
Q ss_pred CCEEEEEEcCCeEEEEEcCC-CeEEEEe--ccCCCCEEEEEEec--CCCEEEEEECCC----eEEEEEcCCCeEEEEEcc
Q psy2685 21 RPWILSSLHNGVIQLWDYRM-NTLLEKF--DEHEGPVRGICFHN--QQPIFVSGGDDY----KIKVWNYKQRKCIFTLLG 91 (992)
Q Consensus 21 g~~Lasg~~dg~I~IWd~~~-g~~~~~~--~~h~~~V~~l~fsp--dg~~Lasgs~Dg----~I~VWd~~t~~~~~~l~~ 91 (992)
...|.+|+..| +.+++... +..-... ......|.+|+++| .+. +.+++..| .|... ...++....+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPER-MLMAARTGHLGPTVFRS-DDGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTC-EEEEEEC--CCEEEEEE-SSTTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCe-EEEEecCCCCCccEEEe-CCCCCCceECCc
Confidence 34688888777 55555332 2211111 12345799999998 444 44444444 33332 223332222211
Q ss_pred --------------CCCCEEEEEEecC--CCEEEEEECCCeEEEEECCCCeeEEEEec-------------------CCC
Q psy2685 92 --------------HLDYIRTTFFHHE--YPWILSASDDQTIRIWNWQSRNCICVLTG-------------------HNH 136 (992)
Q Consensus 92 --------------h~~~V~~i~fspd--~~~L~sgs~Dg~I~vwdl~t~~~i~~l~~-------------------h~~ 136 (992)
+...|.++++.|. ...+..++..+.|...+ +.++....+.. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1124778888862 45566666666655543 22332222211 123
Q ss_pred CeEEEEEecC-CCEEEEEECCCeEEEE
Q psy2685 137 YVMCAQFHPT-DDIVVSASLDQTIRVW 162 (992)
Q Consensus 137 ~V~sl~fspd-g~~L~sgs~Dg~I~iw 162 (992)
.+.++.++|. ...+..++.++.|...
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEE
Confidence 5788999884 3445555544544443
No 461
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=69.14 E-value=7 Score=43.52 Aligned_cols=46 Identities=9% Similarity=-0.079 Sum_probs=38.3
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC-HHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGN-HQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~-l~iAe~aY~~~~ 518 (992)
...|++++|.+..... ++...|..+|......|+ ++.|..+|.++=
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4568899999887644 568899999999999996 999999998763
No 462
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=69.01 E-value=38 Score=29.16 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|..+|..+...++++.|..+|.++-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 39 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAI 39 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4678889999999999999999888754
No 463
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=69.00 E-value=3.2 Score=36.96 Aligned_cols=78 Identities=12% Similarity=-0.049 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHhcCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHH
Q psy2685 474 ECGNIDIALEAARVLEDK--------SVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEI 545 (992)
Q Consensus 474 ~~g~ldeA~~~a~~i~~~--------~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i 545 (992)
..|++++|.+..+..-.. ..|..||......|+++.|+.+|.+.-...-
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------------------- 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP----------------------- 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------
Q ss_pred HHhhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHH
Q psy2685 546 RRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERI 625 (992)
Q Consensus 546 ~~~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai 625 (992)
....-......++..+|+.++|+
T Consensus 59 ---------------------------------------------------------~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 59 ---------------------------------------------------------NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---------------------------------------------------------TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------------------------------------------------CchHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHHHc
Q psy2685 626 KILKSC 631 (992)
Q Consensus 626 ~i~~~~ 631 (992)
+.+.+.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 464
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=68.27 E-value=7.1 Score=33.66 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=39.9
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+..|++++|.+..+.. +....|..||......|+++.|+.+|.+.-
T Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 18 LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6789999999987654 468899999999999999999999998753
No 465
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=67.99 E-value=55 Score=34.09 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCccccc
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFLL 569 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al 569 (992)
+...+-.+|..++..|+++.|+..|+++-..+- ++.+- ...++.+....+.+++|...+.+.-..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a---~~~la~~~~~~g~~~~A~~~l~~~~~~---- 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--------QNGEI---GLLLAETLIALNRSEDAEAVLXTIPLQ---- 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------SCHHH---HHHHHHHHHHTTCHHHHHHHHTTSCGG----
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--------cchhH---HHHHHHHHHHCCCHHHHHHHHHhCchh----
Confidence 456788999999999999999999998632211 22222 333444556778888888888875432
Q ss_pred ccchhhhHHHHH-HHHHHHhccchHHHHHHHHHHHHhcchh----hHHHHhhhcCCHHHHHHHHHHc
Q psy2685 570 HYFSFFFFAFLR-LAFLYLITGNLEKLKKMMKIAEIRRDIS----GQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 570 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~r~d~~----~~~~~al~lg~~~eai~i~~~~ 631 (992)
.|........ .+.+..-.+..+.+....++++..-+.. .....++..|+.++|++.|.+.
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2322211111 1222222223333333334444433322 1334556678888888887764
No 466
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=67.76 E-value=18 Score=32.02 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=40.4
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
.+..|++++|.+..... ++...|..+|...+..|+++.|+.+|.++-.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35679999999877543 4689999999999999999999999987643
No 467
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=67.73 E-value=27 Score=39.73 Aligned_cols=142 Identities=9% Similarity=-0.091 Sum_probs=82.8
Q ss_pred eccCCHHHHHHHHHhc----CChHHHHHHHHHHHHc---------CCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL----EDKSVWERLGHAALMQ---------GNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKM 539 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i----~~~~~W~~LA~~AL~~---------~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~l 539 (992)
...|++++|.+.++.. .+...|..||...... |+++.|+.+|.++-..+- .+.+....+
T Consensus 148 ~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l 219 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--------LDGRSWYIL 219 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--------CCHHHHHHH
Confidence 7889999999987543 3478999999999999 999999999988643322 233333333
Q ss_pred HHHHHHHHhh--------chHHHHHHHHHhcCCcccccccch---hhhHHHHHHHHHHHhccchHHHHH-HHHHHHHhcc
Q psy2685 540 MKIAEIRRDI--------SGQYQAALLLGRMGRGFFLLHYFS---FFFFAFLRLAFLYLITGNLEKLKK-MMKIAEIRRD 607 (992)
Q Consensus 540 a~ia~i~~~~--------~~~~eaa~l~~~~g~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~r~d 607 (992)
+.+. ... +.+++|...+.+.-+ ..| .........-..|.-.++.++..+ +.+++++..+
T Consensus 220 g~~~---~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 220 GNAY---LSLYFNTGQNPKISQQALSAYAQAEK------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHH---HHHHHHTTCCHHHHHHHHHHHHHHHH------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHH---HHHHHhhccccchHHHHHHHHHHHHH------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3333 233 556666666665322 234 333444444555555555555333 3345554444
Q ss_pred hhh----HHHHhhhcCCHHHHHHHHHHc
Q psy2685 608 ISG----QYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 608 ~~~----~~~~al~lg~~~eai~i~~~~ 631 (992)
... ....+..+|+.++|++.+.+.
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 332 223445556666666654443
No 468
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=67.30 E-value=35 Score=31.21 Aligned_cols=30 Identities=3% Similarity=-0.022 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
....|..+|..++..|+++.|..+|.++-.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 41 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIE 41 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356799999999999999999999987643
No 469
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=67.27 E-value=18 Score=32.59 Aligned_cols=79 Identities=9% Similarity=-0.036 Sum_probs=53.2
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHH
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIR 546 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~ 546 (992)
....|++++|.+..... .+...|..+|...+..|+++.|+.+|.++=..+. ...+... .++.+.
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~---~lg~~~ 91 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------KFIKGYI---RKAACL 91 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHH---HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--------hhhHHHH---HHHHHH
Confidence 36789999999877543 4689999999999999999999999987633221 2222222 333334
Q ss_pred HhhchHHHHHHHHHh
Q psy2685 547 RDISGQYQAALLLGR 561 (992)
Q Consensus 547 ~~~~~~~eaa~l~~~ 561 (992)
...+.+++|...+.+
T Consensus 92 ~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 92 VAMREWSKAQRAYED 106 (126)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 455555565555553
No 470
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=67.07 E-value=45 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|..+|......++++.|+.+|.++-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678899999999999999999988763
No 471
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=66.75 E-value=7 Score=36.83 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
....|..+|..++..|+++.|..+|.++=
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al 38 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDAL 38 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678999999999999999999998864
No 472
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.24 E-value=14 Score=45.88 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhc--chhhHHHHhhhcCCHHHHHHHHHH---cCCcHHHHHHHH
Q psy2685 593 EKLKKMMKIAEIRR--DISGQYQAALLLGEVGERIKILKS---CGQTSLAYLTAA 642 (992)
Q Consensus 593 ~~~~~~~~~~e~r~--d~~~~~~~al~lg~~~eai~i~~~---~~~~~~A~~~A~ 642 (992)
+.|+....+|..-+ |+.+..+++++|+|.+.+.+++.+ ++....||.+|=
T Consensus 216 ~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAF 270 (963)
T 4ady_A 216 SILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAF 270 (963)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56777778887777 888899999999999999999999 677666666553
No 473
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=66.13 E-value=9.1 Score=37.39 Aligned_cols=47 Identities=9% Similarity=-0.082 Sum_probs=37.7
Q ss_pred eeccCCHHHHHHHHHhc-----CCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDK----------------SVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~----------------~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
....|++++|.+..+.. .++ ..|..+|...+..++++.|..+|.++-
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 36789999999877543 233 789999999999999999998887653
No 474
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=66.05 E-value=62 Score=36.13 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=32.5
Q ss_pred eccCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+..|++++|.+..... ++...|..+|...+..|+++.|+.+|.++-
T Consensus 17 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 66 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 5567777777766433 467777778888888888888877777653
No 475
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=65.29 E-value=19 Score=33.77 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=41.0
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
.+..|++++|.+..+.. .+...|..+|...+..|+++.|+.+|.++-.
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 36789999999887643 4788999999999999999999999987643
No 476
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=65.23 E-value=17 Score=30.62 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=23.9
Q ss_pred eccCCHHHHHHHHHhc-----C--ChHHHHHHHHHHHHc-CCHHHHHHHHHHc
Q psy2685 473 LECGNIDIALEAARVL-----E--DKSVWERLGHAALMQ-GNHQIVEMCYQRT 517 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~--~~~~W~~LA~~AL~~-~~l~iAe~aY~~~ 517 (992)
...|++++|.+..+.. . +...|..+|...... |+++.|+.+|.++
T Consensus 51 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 51 YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455555555544322 2 345555566555555 5555555555544
No 477
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=64.69 E-value=10 Score=31.06 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=36.5
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..+.. ++...|..+|......++++.|..+|.++-
T Consensus 20 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678888888876543 467788999999999999999988887764
No 478
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=64.46 E-value=23 Score=40.08 Aligned_cols=88 Identities=9% Similarity=-0.009 Sum_probs=65.8
Q ss_pred eeceeccCCHHHHHHHHHhcC----------C---hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhC--CH
Q psy2685 469 LTLALECGNIDIALEAARVLE----------D---KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITG--NL 533 (992)
Q Consensus 469 F~~aL~~g~ldeA~~~a~~i~----------~---~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~--~~ 533 (992)
|..+-..|++++|..+++..- + -....+||.....+|+++.|+..|.++ |....+..| .+
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp 379 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI-----IKPYSKHYPVYSL 379 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCSSCH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----HHHHHHHcCCCCh
Confidence 333345688999998875421 1 457889999999999999999999987 333333333 67
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHh
Q psy2685 534 EKLKKMMKIAEIRRDISGQYQAALLLGR 561 (992)
Q Consensus 534 ek~~~la~ia~i~~~~~~~~eaa~l~~~ 561 (992)
+-...+..++.+....+.+++|..++.+
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 7788888888888888888888888773
No 479
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=64.43 E-value=4.4 Score=45.39 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=35.4
Q ss_pred hhHHHHhhhcCCHHHHHHHHHHcCCcHHHHHHHHhcCChHH
Q psy2685 609 SGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEE 649 (992)
Q Consensus 609 ~~~~~~al~lg~~~eai~i~~~~~~~~~A~~~A~~~~~~~~ 649 (992)
......+|..||+++|+++|.+.++|.+|+.+|..-|.+-.
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~ 187 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERL 187 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHH
Confidence 33678899999999999999999999999999987665544
No 480
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=64.30 E-value=41 Score=35.36 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHHHHh----c--CChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 479 DIALEAARV----L--EDKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 479 deA~~~a~~----i--~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
++|....+. + ++...|..+|......|+++.|+.+|.++=..
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 777766532 2 34679999999999999999999999986543
No 481
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=64.20 E-value=22 Score=31.61 Aligned_cols=48 Identities=6% Similarity=-0.155 Sum_probs=40.3
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
....|++++|.+..+.. .+...|..+|...+..++++.|..+|.++-.
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 36789999999877543 4588999999999999999999999987653
No 482
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=64.18 E-value=24 Score=29.93 Aligned_cols=78 Identities=17% Similarity=0.061 Sum_probs=53.4
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
...|++++|.+..+.. .+...|..+|......++++.|..+|.++-.... ...+... .++....
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~---~~a~~~~ 83 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------DWGKGYS---RKAAALE 83 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHH---HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--------ccHHHHH---HHHHHHH
Confidence 5678999999877654 4688999999999999999999999987643221 2222222 2333344
Q ss_pred hhchHHHHHHHHHh
Q psy2685 548 DISGQYQAALLLGR 561 (992)
Q Consensus 548 ~~~~~~eaa~l~~~ 561 (992)
..+.+++|...+.+
T Consensus 84 ~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 84 FLNRFEEAKRTYEE 97 (118)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 55666666666654
No 483
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=63.96 E-value=71 Score=32.24 Aligned_cols=31 Identities=6% Similarity=-0.123 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 489 EDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 489 ~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
.+...+-.+|..++..|+++.|+..|.++-.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 43 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFT 43 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577888999999999999999999998754
No 484
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=63.63 E-value=11 Score=34.11 Aligned_cols=46 Identities=2% Similarity=-0.040 Sum_probs=38.8
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
...|++++|.+..... ++...|..+|...+..|+++.|+.+|.++=
T Consensus 19 ~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 5678999999877542 468899999999999999999999998763
No 485
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=63.57 E-value=22 Score=30.43 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=39.5
Q ss_pred eeccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
....|++++|.+..+.. .+...|..+|......++++.|..+|.++-
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35678999999887544 467899999999999999999999998764
No 486
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.46 E-value=1.5e+02 Score=31.01 Aligned_cols=203 Identities=8% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEE---EEcCCCeEEEEeccCCCCEEEEEEec--CCCEEEEEECCCeEEEEEcCC
Q psy2685 8 KSARVKGLSFHPKRPWILSSLHNGVIQL---WDYRMNTLLEKFDEHEGPVRGICFHN--QQPIFVSGGDDYKIKVWNYKQ 82 (992)
Q Consensus 8 H~~~V~~iafspdg~~Lasg~~dg~I~I---Wd~~~g~~~~~~~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~VWd~~t 82 (992)
..+.+..+.-......|+.-+..|.++- |++..+..... -.....|..+.- + +.+.++..+.+|.|+-..+..
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Q ss_pred ------CeEEEEEccCCCCEEEEEEecCCCEEEEEECCCeEEEEECCC---------CeeEEEEecCCCCeEEEEEecCC
Q psy2685 83 ------RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQS---------RNCICVLTGHNHYVMCAQFHPTD 147 (992)
Q Consensus 83 ------~~~~~~l~~h~~~V~~i~fspd~~~L~sgs~Dg~I~vwdl~t---------~~~i~~l~~h~~~V~sl~fspdg 147 (992)
|.....+.. .+.+..+....+...++..+..|.+..++... |.....+... +.|..+...+++
T Consensus 100 ~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-d~vv~~~~~~~~ 177 (276)
T 3no0_A 100 FEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-DETSGLRIWNGE 177 (276)
T ss_dssp TTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-CCEEEEEEESSC
T ss_pred hhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-CEEEEEEEeCCC
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCcccCCCeEEEEEccCCcceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy2685 148 DIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSI 227 (992)
Q Consensus 148 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~d~~I~iwd~~~~~~~~i~~l~~h~~~V~~v~fspdg~~L~s~s~Dg~I 227 (992)
..++..+..|.++...+.......... .-+..+ ...+.+..+....+++.++..+.+|.+
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~g-------------------kGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ 237 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGV-------------------KGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKA 237 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTC-------------------CCEECC-CSSSCEEEEEEESSEEEEEEEETTSCE
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCC-------------------cceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeE
Q ss_pred EE--EECCC
Q psy2685 228 RL--WDMTK 234 (992)
Q Consensus 228 ~v--wdl~~ 234 (992)
.. ++...
T Consensus 238 ir~~~~~~~ 246 (276)
T 3no0_A 238 FYDKINQKD 246 (276)
T ss_dssp EEEEEEGGG
T ss_pred EEeeeCHHH
No 487
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=63.25 E-value=9.1 Score=32.32 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=39.5
Q ss_pred eeccCCHHHHHHHHHhc-----CChH-HHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 472 ALECGNIDIALEAARVL-----EDKS-VWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 472 aL~~g~ldeA~~~a~~i-----~~~~-~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.+..|++++|.+.++.. ++.. .|..+|......|+++.|+.+|.++-
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35679999999888654 4567 99999999999999999999998764
No 488
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=63.19 E-value=1.3e+02 Score=31.98 Aligned_cols=155 Identities=16% Similarity=0.047 Sum_probs=79.5
Q ss_pred ceeccCCHHHHHHHHHhc----CC--h----HHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHH-HHHH
Q psy2685 471 LALECGNIDIALEAARVL----ED--K----SVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEK-LKKM 539 (992)
Q Consensus 471 ~aL~~g~ldeA~~~a~~i----~~--~----~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek-~~~l 539 (992)
.++..|++++|.+.++.. .. + ..+..+|......|+++.|+..|.+.-.... -.+.... ..-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~ 96 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR------QHDVWHYALWSL 96 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH------hcCcHHHHHHHH
Confidence 346789999998886542 22 2 1567888999999999999999887543211 1122111 1112
Q ss_pred HHHHHHHHhhchHHHHHHHHHhcCCccccccc--chhhhHHHHHHHHHHHhccchHHHHH-HHHHHHHhcc---------
Q psy2685 540 MKIAEIRRDISGQYQAALLLGRMGRGFFLLHY--FSFFFFAFLRLAFLYLITGNLEKLKK-MMKIAEIRRD--------- 607 (992)
Q Consensus 540 a~ia~i~~~~~~~~eaa~l~~~~g~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~r~d--------- 607 (992)
..++.+....+.+.+|...+.+.-........ .|.........-..|...++.+.-.. ..+.++....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33444445555566655555542211100000 02222222222334444455554332 2233332221
Q ss_pred hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 608 ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 608 ~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
+......+...|+.++|.+.+.+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111344567779999999888654
No 489
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=62.87 E-value=21 Score=31.32 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=38.3
Q ss_pred eccCCHHHHHHHHHhc-----CCh---HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 473 LECGNIDIALEAARVL-----EDK---SVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~---~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+..|++++|.+..+.. +++ ..|-.+|...+..|+++.|..+|.++-
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5689999999887654 234 699999999999999999999998753
No 490
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=62.26 E-value=4.4 Score=38.33 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=40.4
Q ss_pred ccceeEeeecCeeEEEeehhhhhhceeeeceeEEEEECC--Cc-c--eeeecccc
Q psy2685 807 GTGALLCREADHVILFDVQQKRALAQVKVAKCRHVVWSP--DM-T--HLALLSKH 856 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~--~~~~~~~~ 856 (992)
|...+|..+++.|.|+|-+++..|.+.++.+|+ +|.+ |+ + -.|+.+++
T Consensus 54 gq~~~L~v~~~tlrLvD~~tk~~L~~~pI~~I~--f~~~gr~~~~~~dFAfv~rd 106 (148)
T 3d8d_A 54 GKDLLLQLEDETLKLVEPQSQALLHAQPIISIR--VWGVGRDSGRERDFAYVARD 106 (148)
T ss_dssp TCEEEEEEETTEEEEECTTTCCEEEEEEGGGCC--EEEECCCC--CCEEEEEEEC
T ss_pred CceEEEEEcCCeEEEecCCCCceEEEeeEEEEE--EEeCCCCCCccccEEEEEec
Confidence 678999999999999999999999999999999 7766 33 2 37776655
No 491
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=61.83 E-value=12 Score=31.93 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=39.5
Q ss_pred eccCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 473 LECGNIDIALEAARVL-----EDKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i-----~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
...|++++|.+..+.. ++...|..+|...+..|+++.|+.+|.++-..
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5678999998877543 46889999999999999999999999886544
No 492
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=61.58 E-value=98 Score=28.33 Aligned_cols=124 Identities=15% Similarity=0.031 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcccccc
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGRGFFLLH 570 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~~l~~L~~i~~~~ek~~~la~ia~i~~~~~~~~eaa~l~~~~g~~~~al~ 570 (992)
...|..+|......|+++.|..+|.++-.... ....... .++......+.+++|...+.+.- .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~------~ 70 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------FDVDVAL---HLGIAYVKTGAVDRGTELLERSL------A 70 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------CCHHHHH---HHHHHHHHTTCHHHHHHHHHHHH------H
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------cChHHHH---HHHHHHHHcCCHHHHHHHHHHHH------h
Confidence 35688899999999999999999998765432 1222222 22333344555556555555422 1
Q ss_pred cchhhhHHHHHHHHHHHhccchHHHHHHH-HHHHHhcc----hhhHHHHhhhcCCHHHHHHHHHHc
Q psy2685 571 YFSFFFFAFLRLAFLYLITGNLEKLKKMM-KIAEIRRD----ISGQYQAALLLGEVGERIKILKSC 631 (992)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~r~d----~~~~~~~al~lg~~~eai~i~~~~ 631 (992)
..|............|...++.+...+.. ++++...+ .......+..+|+.++|++.+.+.
T Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 12333333334444555555554433322 22222211 111334566678888888887664
No 493
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=61.51 E-value=26 Score=40.46 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=39.9
Q ss_pred eccCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHccCc
Q psy2685 473 LECGNIDIALEAARVL------EDKSVWERLGHAALMQGNHQIVEMCYQRTKNF 520 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i------~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~ 520 (992)
...+++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+...
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 134 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 3456789999988765 37889999999999999999999999887643
No 494
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=61.23 E-value=33 Score=30.47 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 493 VWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 493 ~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
.|-.+|...+..|+++.|..+|.++=
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al 44 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVC 44 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998763
No 495
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=60.98 E-value=35 Score=36.12 Aligned_cols=117 Identities=11% Similarity=-0.127 Sum_probs=74.9
Q ss_pred eccCCHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCcc-hHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy2685 473 LECGNIDIALEAARVLED----KSVWERLGHAALMQGNHQIVEMCYQRTKNFD-KLAFLYLITGNLEKLKKMMKIAEIRR 547 (992)
Q Consensus 473 L~~g~ldeA~~~a~~i~~----~~~W~~LA~~AL~~~~l~iAe~aY~~~~d~~-~l~~L~~i~~~~ek~~~la~ia~i~~ 547 (992)
++.|++++|.+....+.. ...+-.+|..+++.++++.|+.+|.+..... .. ....--..++....
T Consensus 113 ~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~----------~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 113 AAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF----------LAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----------HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----------cHHHHHHHHHHHHH
Confidence 678999999999976642 2267788899999999999999998665432 11 01111233445567
Q ss_pred hhchHHHHHHHHHhcCCcccccccchhhhHHHHHHHHHHHhccchHHHHHHHHHHHHhcchhhHHHHhhhcCCHHHHHHH
Q psy2685 548 DISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKI 627 (992)
Q Consensus 548 ~~~~~~eaa~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~d~~~~~~~al~lg~~~eai~i 627 (992)
..+.+.+|...|.+..... ..|... .... ..+..++..+|+.+||+++
T Consensus 183 ~LG~~~eAl~~l~~a~~g~----~~P~~~--------------------~da~--------~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSP----AGEACA--------------------RAIA--------WYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HTTCHHHHHHHHHHHHTST----TTTTTH--------------------HHHH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCC----CCcccc--------------------HHHH--------HHHHHHHHHcCCHHHHHHH
Confidence 7778888888877642111 001100 0000 1145677788999999999
Q ss_pred HHHc
Q psy2685 628 LKSC 631 (992)
Q Consensus 628 ~~~~ 631 (992)
|.+.
T Consensus 231 l~~a 234 (282)
T 4f3v_A 231 LEWL 234 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 496
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=60.71 E-value=66 Score=27.52 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 492 SVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 492 ~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
..|..+|......|+++.|...|.++-
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 28 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKAL 28 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 468899999999999999999998763
No 497
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=60.66 E-value=8 Score=42.07 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 491 KSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 491 ~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
...|..+|..+...++++.|..+|.++-.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~ 207 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA 207 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35689999999999999999999998643
No 498
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=60.00 E-value=1e+02 Score=35.01 Aligned_cols=118 Identities=8% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCeEEEEeccCCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCCe---EEEEEccC---------CCCEEEEEEecC--
Q psy2685 40 MNTLLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQRK---CIFTLLGH---------LDYIRTTFFHHE-- 104 (992)
Q Consensus 40 ~g~~~~~~~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h---------~~~V~~i~fspd-- 104 (992)
.|-.+..+-..-..-..|+|.|+|. .++++...|.|++++..... .+..+... ......|+|+|+
T Consensus 2 ~gf~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 2 NCFCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp CCEEEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CceEEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Q ss_pred --CCEEEEEECCC------------eEEEEECC----------CCeeEEEEe--cCCCCeEEEEEecCCCEEEEEECCC
Q psy2685 105 --YPWILSASDDQ------------TIRIWNWQ----------SRNCICVLT--GHNHYVMCAQFHPTDDIVVSASLDQ 157 (992)
Q Consensus 105 --~~~L~sgs~Dg------------~I~vwdl~----------t~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~Dg 157 (992)
+.+.++-+.+. .|.-|.+. +.+.+..+. ...+.-..+.|.|||.+.++.++.+
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
No 499
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=59.85 E-value=9.2 Score=32.73 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q psy2685 490 DKSVWERLGHAALMQGNHQIVEMCYQRTK 518 (992)
Q Consensus 490 ~~~~W~~LA~~AL~~~~l~iAe~aY~~~~ 518 (992)
+...|..+|......|+++.|..+|.++-
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al 31 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLI 31 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45679999999999999999999997763
No 500
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=59.73 E-value=36 Score=37.36 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q psy2685 476 GNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEMCYQRTKN 519 (992)
Q Consensus 476 g~ldeA~~~a~~i~~~~~W~~LA~~AL~~~~l~iAe~aY~~~~d 519 (992)
..++++.+.+ ..|..+|..++..++++.|+.+|.++-.
T Consensus 214 ~~~~~~~~~a------~~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 214 KDVDKILLIS------EDLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp TCHHHHHHHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3566665554 4699999999999999999999987643
Done!