RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2685
(992 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 223 bits (571), Expect = 4e-66
Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 34/300 (11%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V ++F P + + +G I++WD LL H GPVR + S
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 69 GGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCI 128
G D I++W+ + +C+ TL GH Y+ + F + + S+S D+TI++W+ ++ C+
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128
Query: 129 CVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRM 188
L GH +V F P V S+S D TI++WD+ +
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-------------------- 168
Query: 189 NDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERF 248
V GH V+ V F P E ++S++ D +I+LWD++ CL T R +
Sbjct: 169 ------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222
Query: 249 WS-------EVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLN-LFAAGHD 300
S ++ S +ED +IR+WD+ C+ T L P L + D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282
Score = 190 bits (484), Expect = 3e-54
Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 36/284 (12%)
Query: 47 FDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP 106
H G V + F + +G D IKVW+ + + + TL GH +R +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 107 WILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 166
++ S S D+TIR+W+ ++ C+ LTGH YV F P I+ S+S D+TI+VWD+
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 167 LRKKNVAPGMGADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKS 226
+ RGH + V+ V F P + S+++D +
Sbjct: 125 GKCLTT--------------------------LRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Query: 227 IRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDKSIRLWDMTKRTCLNTFRRE 279
I+LWD+ C+ T S E ++S++ D +I+LWD++ CL T R
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218
Query: 280 QERFWVLVAHPTLNLFAAGHDAG-MVVFKFERERPAYTV--HNN 320
+ + P L A+G + G + V+ T+ H N
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN 262
Score = 185 bits (472), Expect = 1e-52
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 33/262 (12%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
V+ ++ ++ S + I+LWD + H V + F I S
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 72 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRNCICVL 131
D IKVW+ + KC+ TL GH D++ + F + ++ S+S D TI++W+ ++ C+ L
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173
Query: 132 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGADDRQIKLWRMNDS 191
TGH V F P + ++S+S D TI++WD+S
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-------------------------- 207
Query: 192 KAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS- 250
+ RGH N V+ V F P ++ S +ED +IR+WD+ C+ T S
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 251 ------EVIVSNAEDKSIRLWD 266
+ + S + D +IR+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
Score = 144 bits (365), Expect = 3e-38
Identities = 50/162 (30%), Positives = 79/162 (48%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHN 61
LT + V ++F P ++ SS +G I+LWD R + H G V + F
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP 187
Query: 62 QQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121
+S D IK+W+ KC+ TL GH + + + F + + S S+D TIR+W+
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247
Query: 122 WQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
++ C+ L+GH + V + P + S S D TIR+WD
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 119 bits (300), Expect = 1e-29
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 29/198 (14%)
Query: 127 CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR--------KKNVAPGM-- 176
L GH V C F P ++ + S D TI+VWD+ V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 177 --------GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIR 228
G+ D+ I+LW + + V GH + VS V F P ++ S++ DK+I+
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 229 LWDMTKRTCLNTFRREQERF-----WSE---VIVSNAEDKSIRLWDMTKRTCLNTFRREQ 280
+WD+ CL T R + +S + S+++D +I+LWD+ C+ T
Sbjct: 119 VWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177
Query: 281 ERFWVLVAHPTLNLFAAG 298
+ P +
Sbjct: 178 GEVNSVAFSPDGEKLLSS 195
>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region. This
region is composed of WD40 repeats.
Length = 429
Score = 176 bits (448), Expect = 8e-48
Identities = 64/110 (58%), Positives = 79/110 (71%)
Query: 453 GYPEVALHFVKDDRTRLTLALECGNIDIALEAARVLEDKSVWERLGHAALMQGNHQIVEM 512
GYPE+AL FV D TR LALE GN+D+ALE A+ L+D+ W+RLG AAL QGN ++ E
Sbjct: 295 GYPELALQFVTDPDTRFDLALELGNLDVALEIAKELDDEHKWKRLGDAALSQGNIKLAEE 354
Query: 513 CYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRM 562
YQ+ K+FDKL LYL TGN EKLKK+ KIAE R D + +Q AL LG +
Sbjct: 355 AYQKAKDFDKLLLLYLSTGNKEKLKKLAKIAEERGDYNSAFQNALYLGDV 404
Score = 165 bits (420), Expect = 5e-44
Identities = 76/218 (34%), Positives = 112/218 (51%), Gaps = 42/218 (19%)
Query: 801 EEIFYAGTGALLCREADH-VILFDVQQKRALAQVKVAKCRHVVWSPDMTHLALLSKHTLH 859
++IF GALL +++ V +D +Q + + ++ V+ ++V+WS D +ALL+K T++
Sbjct: 110 DKIFG---GALLGVKSESFVSFYDWEQGKLIRRIDVSP-KYVIWSDDGELVALLTKDTVY 165
Query: 860 ICNRKMEGAGLMKSDVINNIDSSLAATEVDVQG-WGDDA---------------DLG--- 900
I N +E + V + + TE G W D + G
Sbjct: 166 ILNYNLE---AVAEGVEDAFEVLHEVTERVKSGAWDGDVFIYTTLNHLKYLVNGETGIIK 222
Query: 901 ---------------NQVYYLDRECSPHVLRIDPTEFKFKLALINHKYEEVLHIVRNSRL 945
N+VY LDR+ + IDPTE +FK AL+ YEEVL I+ NS L
Sbjct: 223 HLDKPMYLLGYLPKDNRVYLLDRDGNVVSYEIDPTELEFKTALLRKDYEEVLRIIANSNL 282
Query: 946 VGQSIIAYLQQKGYPEVALHFVKDDRTRLTLALECGNI 983
+GQ II +L++KGYPE+AL FV D TR LALE GN+
Sbjct: 283 LGQKIIRFLEKKGYPELALQFVTDPDTRFDLALELGNL 320
Score = 71.1 bits (175), Expect = 9e-13
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 340 DSVVMQLRGGG--RIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 397
+ + + L+ G + S+S+N +LV + Y +Y
Sbjct: 17 ELLPLSLKELGSTEVYPQSLSHNPNGRFVLV-------CGDGEYIIYTAL-------AWR 62
Query: 398 DGKRSTGISAVWVARNRFAVLDRNHTILI-KNLKNEYLWRM 437
+ +G+ VWV+RNR+AVL+++ T+ I KN K +
Sbjct: 63 NKAFGSGLDFVWVSRNRYAVLEKSGTVKIFKNFKESVTKSI 103
Score = 37.2 bits (87), Expect = 0.046
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 693 TVTKKMS-SVGCEEIFYAGTGALLCREADH-VILFDVQQKRALAQVKV 738
+VTK + ++IF GALL +++ V +D +Q + + ++ V
Sbjct: 98 SVTKSIKLPYSVDKIFG---GALLGVKSESFVSFYDWEQGKLIRRIDV 142
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 154 bits (389), Expect = 5e-40
Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 36/297 (12%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILS-SLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+ E S V L+F P + S S +G I+LWD R L H PV + F
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207
Query: 61 -NQQPIFVSGGDDYKIKVWNYKQRKCIFTLL-GHLDYIRTTFFHHEYPWILSASDDQTIR 118
+ + SG D I++W+ K + + L GH D + + F + + S S D TIR
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR 266
Query: 119 IWNWQS-RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMG 177
+W+ +S + + L+GH+ V+ F P ++ S S D T+R+WD+ + + G
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326
Query: 178 ---------------------ADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSE 216
+DD I+LW + K + ++NV V F P
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---GHSNVLSVSFSPDGR 383
Query: 217 VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS-------EVIVSNAEDKSIRLWD 266
V+ S + D ++RLWD++ + L R S + + S + D +IRLWD
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
Score = 135 bits (339), Expect = 2e-33
Identities = 75/333 (22%), Positives = 130/333 (39%), Gaps = 42/333 (12%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGD 71
+ L +L+ L + ++ L D HE + I F + +SG
Sbjct: 30 LLSLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSS 85
Query: 72 DYKIKVWNY-KQRKCIFTLLG-HLDYIRTT-FFHHEYPWILSA--SDDQTIRIWNWQS-R 125
D IK+W+ K I +L G H + + IL A S D T+++W+ +
Sbjct: 86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145
Query: 126 NCICVLTGHNHYVMCAQFHPTDDIVVSAS-LDQTIRVWDISGLRKKNVAPGM-------- 176
I L GH+ V F P ++ S S LD TI++WD+ + + G
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 177 -----------GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNAEDK 225
G+ D I+LW ++ K GH ++V F P ++ S + D
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDSVVSS-FSPDGSLLASGSSDG 263
Query: 226 SIRLWDM-TKRTCLNTFRREQERFWS-------EVIVSNAEDKSIRLWDMTKRTCLNTFR 277
+IRLWD+ + + L T S +++ S + D ++RLWD+ L++
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323
Query: 278 RE--QERFWVLVAHPTLNLFAAGHDAGMVVFKF 308
+ + L P +L +G + +
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
Score = 133 bits (335), Expect = 6e-33
Identities = 82/374 (21%), Positives = 150/374 (40%), Gaps = 41/374 (10%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKF--DEHEGPVRGICF--HNQQP 64
+ ++F P +LS +G I+LWD L K H+ V + +
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 65 IFVSGGD-DYKIKVWNY-KQRKCIFTLLGHLDYIRTTFFHHEYPWILSASD-DQTIRIWN 121
I ++ D +K+W+ K I TL GH + + + F + + S S D TI++W+
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184
Query: 122 WQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDIS-GLRKKNVAPGM--- 176
++ + L GH V F P ++ S S D TIR+WD+S G ++ G
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 177 --------------GADDRQIKLWRMNDSKAWEVDIFRGHYNNVSCVLFHPKSEVIVSNA 222
G+ D I+LW + S + + GH ++V V F P +++ S +
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 223 EDKSIRLWDMTKRTCLNTFRREQERFW----------SEVIVSNAEDKSIRLWDMTKRTC 272
D ++RLWD+ L++ + S ++ ++D +IRLWD+
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363
Query: 273 LNTFRREQERFWVLVAHPTLNLFAAGHDAGMV-VFKFERERPAYTV--HNNVMYYVKERF 329
L T + P + ++G G V ++ + H + + +
Sbjct: 364 LKTLEG-HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422
Query: 330 LHRLDLTNSKDSVV 343
+ + S D+ +
Sbjct: 423 DGKSLASGSSDNTI 436
Score = 100 bits (249), Expect = 4e-22
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 4/175 (2%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTL--LEKFDEHEGPVRGIC 58
+L S+ V ++F P + S +G ++LWD L HEGPV +
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 59 FH-NQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTI 117
F + + G DD I++W+ + K + TL GH + + F + + S S D T+
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTV 394
Query: 118 RIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 172
R+W+ + + + L GH V F P + S S D TIR+WD+ K
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
Score = 74.4 bits (181), Expect = 1e-13
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSL-HNGVIQLWDYRMNTLLEKFDEHEGPVRGICF 59
+ V LSF P ++S +G I+LWD R L+ + H V + F
Sbjct: 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSF 378
Query: 60 HNQQPIFVSGGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRI 119
+ SG D +++W+ + L GH + + F + + S S D TIR+
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438
Query: 120 WNWQSRNCICVL 131
W+ ++
Sbjct: 439 WDLKTSLKSVSF 450
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 53.9 bits (130), Expect = 1e-09
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 124 SRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
S + L GH V F P + S S D TI++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 82 QRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121
+ + TL GH + + F + ++ S SDD TI++W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 42 TLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79
LL+ H GPV + F SG DD IK+W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 44.2 bits (105), Expect = 4e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 196 VDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
+ +GH V+ V F P + + S ++D +I+LWD
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 31.1 bits (71), Expect = 0.14
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWD 37
L + + V ++F P ++ S +G I+LWD
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 52.0 bits (125), Expect = 6e-09
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 125 RNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 163
+ L GH V F P +++ S S D T+RVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 45.4 bits (108), Expect = 1e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 42 TLLEKFDEHEGPVRGICFHNQQPIFVSGGDDYKIKVWN 79
LL H GPV + F + SG DD ++VW+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 45.0 bits (107), Expect = 2e-06
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 196 VDIFRGHYNNVSCVLFHPKSEVIVSNAEDKSIRLWD 231
+ +GH V+ V F P ++ S ++D ++R+WD
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 44.3 bits (105), Expect = 3e-06
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN 121
K + TL GH + + F + + S SDD T+R+W+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 33.5 bits (77), Expect = 0.025
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWD 37
L + + V ++F P + S +G +++WD
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 57.8 bits (139), Expect = 2e-08
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP-IFVSGGDDYKIKVWNYKQ 82
+ SS GV+Q+WD + L+ + EHE V I + + P + SG DD +K+W+ Q
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 83 RKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRN---CICVLTGHNHYVM 139
I T+ + F + S D +++ + RN +C + GH+ V
Sbjct: 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADH--KVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 140 CAQFHPTDDIVVSASLDQTIRVWDIS 165
+F + + VS+S D T+++WD+S
Sbjct: 666 YVRFVDSSTL-VSSSTDNTLKLWDLS 690
Score = 32.0 bits (72), Expect = 1.8
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 214 KSEVIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWS--------EVIVSNAEDKSIRLW 265
KS+V SN + +++WD+ + + + ++R WS ++ S ++D S++LW
Sbjct: 545 KSQVASSNF-EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603
Query: 266 DMTKRTCLNTFR 277
+ + + T +
Sbjct: 604 SINQGVSIGTIK 615
Score = 29.7 bits (66), Expect = 8.8
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 216 EVIVSNAEDKSIRLWDMTKRT-----CLNTFRREQERFWSEVIVSNAEDKSIRLWDMTKR 270
E I+ + D + ++ R+ C N++ + Q + S+ + +++WD+ +
Sbjct: 513 ESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ-------VASSNFEGVVQVWDVARS 565
Query: 271 TCLNTFRREQERFWVL---VAHPTLNLFAAGHDAGMV 304
+ + ++R W + A PT L A+G D G V
Sbjct: 566 QLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSV 600
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 43.4 bits (102), Expect = 5e-04
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 75 IKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL-SASDDQTIRIW----NWQSRNCI- 128
I++ N ++ + L GH I F+ + IL S S+D TIR+W N +S I
Sbjct: 56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115
Query: 129 ---CVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRK 169
C+L GH + ++P + I+ S+ D + +WDI ++
Sbjct: 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160
Score = 43.0 bits (101), Expect = 7e-04
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 28/122 (22%)
Query: 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPT-DDIVVSASLDQTIRVWDISGLRKKNVAPG 175
IR+ N + + L GH ++ QF+P +I+ S S D TIRVW+I
Sbjct: 56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI----------- 104
Query: 176 MGADDRQIKLWRMNDSKAWEVD----IFRGHYNNVSCVLFHPKSEVIVSNAE-DKSIRLW 230
ND E+ I +GH +S + ++P + I+ ++ D + +W
Sbjct: 105 -----------PHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153
Query: 231 DM 232
D+
Sbjct: 154 DI 155
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 32.6 bits (74), Expect = 1.2
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 32/148 (21%)
Query: 130 VLTGHNHYVMCAQFHPTDDI-VVSASLDQTIRVWDI--SGLRKKNVAPGMGADDRQIKLW 186
+L G ++ F+P D + +AS D TI W I GL +N++ D + L
Sbjct: 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNIS------DPIVHL- 121
Query: 187 RMNDSKAWEVDIFRGHYNNVSCVLFHPKSE-VIVSNAEDKSIRLWDMTKRTCLNTFRREQ 245
+GH V V FHP + V+ S D + +WD+ + + +
Sbjct: 122 -------------QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168
Query: 246 ERF----WS---EVIVSNAEDKSIRLWD 266
++ W+ ++ + ++DK + + D
Sbjct: 169 DQITSLEWNLDGSLLCTTSKDKKLNIID 196
Score = 31.8 bits (72), Expect = 2.1
Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 42/198 (21%)
Query: 51 EGPVRGICFH--NQQPIFVSGGDDYKIKVWNYK----QRKC---IFTLLGHLDYIRTTFF 101
EGP+ + F+ + Q +F + +D I W + I L GH + F
Sbjct: 75 EGPIIDVAFNPFDPQKLF-TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF 133
Query: 102 HHEYPWIL-SASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 160
H +L SA D + +W+ + + V+ H+ + +++ ++ + S D+ +
Sbjct: 134 HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193
Query: 161 VWD-------ISG-------------LRKKNVAPGMG---ADDRQIKLW--RMNDSKAWE 195
+ D S ++K++ +G + RQI LW R S
Sbjct: 194 IIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253
Query: 196 VDIFRGHYNNVSCVLFHP 213
VD+ + S LF P
Sbjct: 254 VDL------DQSSALFIP 265
>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family. This
model represents a family of uncharacterized bacterial
proteins. Members are present in nearly every complete
bacterial genome, always in a single copy. PSI-BLAST
analysis shows homology to several families of
SAM-dependent methyltransferases, including ribosomal
RNA adenine dimethylases [Protein synthesis, tRNA and
rRNA base modification].
Length = 190
Score = 31.2 bits (71), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 708 YAGTGAL----LCREADHVILFDVQQKRALAQVK 737
+AG+GAL L R A + + Q ++ +K
Sbjct: 58 FAGSGALGLEALSRGAASAVFVE-QDRKVAQTLK 90
Score = 31.2 bits (71), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 759 YAGTGAL----LCREADHVILFDVQQKRALAQVK 788
+AG+GAL L R A + + Q ++ +K
Sbjct: 58 FAGSGALGLEALSRGAASAVFVE-QDRKVAQTLK 90
Score = 31.2 bits (71), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 805 YAGTGAL----LCREADHVILFDVQQKRALAQVK 834
+AG+GAL L R A + + Q ++ +K
Sbjct: 58 FAGSGALGLEALSRGAASAVFVE-QDRKVAQTLK 90
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 31.4 bits (71), Expect = 3.0
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 723 ILFDVQQKRALAQVKVAKCRHVVTKKMSSVGCEEIFYAGTGALLCREADHVILFDVQQ 780
IL + R A+ + +VVT S+ E F AL E D VI++ Q
Sbjct: 306 ILSEEHVVRGDAEEALENSAYVVTNHYSTPFTEHAFLEPESALAVPEGDGVIIYTSTQ 363
>gnl|CDD|216187 pfam00913, Trypan_glycop, Trypanosome variant surface glycoprotein
(A-type). The trypanosome parasite expresses these
proteins to evade the immune response. This family
includes a variety of surface proteins such as
Trypanosoma brucei VSGs such as expression site
associated gene (ESAG) 6 and 7.
Length = 370
Score = 30.5 bits (69), Expect = 4.6
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 593 EKLKKM-----MKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQ---TSLAYLTAATH 644
++LKK+ K+ I I +AAL L RI K+ G + A L A
Sbjct: 35 KELKKVPGYALTKLQAILTAIEELEKAALRL-----RIYAAKAAGAEEAKAAAALAAYLR 89
Query: 645 GLSEEAAELESNLRTADPNAT 665
+ A L++ L +A
Sbjct: 90 KAAAALASLKATLVKKAIDAA 110
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 30.6 bits (69), Expect = 5.8
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 649 EAAELESNLRTADPNATLPTVHPEAQ-LLRPPAPVAE 684
A + L A A P + PEAQ ++ P
Sbjct: 397 GDAARAAALNDAGAGAARPGLPPEAQAIVYGPGASEA 433
>gnl|CDD|235876 PRK06849, PRK06849, hypothetical protein; Provisional.
Length = 389
Score = 30.0 bits (68), Expect = 7.6
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 703 CEEIFYAGTGALLCREADHVILFDVQQKRAL 733
CEE+FY V+ FD + L
Sbjct: 84 CEEVFYLSHAKEELSAYCEVLHFDFELLLLL 114
Score = 30.0 bits (68), Expect = 7.6
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 754 CEEIFYAGTGALLCREADHVILFDVQQKRAL 784
CEE+FY V+ FD + L
Sbjct: 84 CEEVFYLSHAKEELSAYCEVLHFDFELLLLL 114
>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 618
Score = 29.8 bits (67), Expect = 8.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 309 ERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISY 359
+ E A+ N Y E F+H +NS M RGGG++P SI+Y
Sbjct: 168 QIEEFAWKETENDTYQACEAFIHN---SNS-----MHSRGGGQVPFISINY 210
>gnl|CDD|150710 pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304).
Members of this family of hypothetical archaeal proteins
have no known function.
Length = 115
Score = 28.0 bits (63), Expect = 9.0
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 542 IAEIRRDISGQYQAALLLGRMGRGFFLLHYFSFFFFAFLRLAFLYLITGNLEKLKKMMKI 601
+ + ISG+ A LLG +GRG L Y +L L+ + ++KL++ +I
Sbjct: 45 LFALFPKISGRI--ANLLG-IGRGLDALFYLGIGLLFYL----LFKLYLKIDKLER--EI 95
Query: 602 AEIRRDIS 609
++ R+I+
Sbjct: 96 TKLVREIA 103
>gnl|CDD|239055 cd02140, Nitroreductase_4, Nitroreductase-like family 4. A
subfamily of the nitroreductase family containing
uncharacterized proteins that are similar to
nitroreductase. Nitroreductase catalyzes the reduction
of nitroaromatic compounds such as nitrotoluenes,
nitrofurans and nitroimidazoles. This process requires
NAD(P)H as electron donor in an obligatory two-electron
transfer and uses FMN as cofactor. The enzyme is
typically a homodimer. Members of this family are also
called NADH dehydrogenase, oxygen-insensitive NAD(P)H
nitrogenase or dihydropteridine reductase.
Length = 192
Score = 29.2 bits (66), Expect = 9.2
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 252 VIVSNAEDKSIRLWDMTKRTCLNTFRREQERFWVLVAHPTLNLFAAGHDAGMVVFKFERE 311
VI+ E + +LWD+ K T L E F L+ F AG G V+F FE +
Sbjct: 48 VILFGEEHE--KLWDIVKDT-LRAI-VPAEAFA--ATKEKLDGFKAG--YGTVLF-FEDQ 98
>gnl|CDD|217576 pfam03466, LysR_substrate, LysR substrate binding domain. The
structure of this domain is known and is similar to the
periplasmic binding proteins.
Length = 207
Score = 28.8 bits (65), Expect = 9.8
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 454 YPEVALHFVKDDRTRLTLALECGNIDIALEAARVLEDKSVWERLGH 499
YP+V L V+ D L L G +D+A+ + L
Sbjct: 30 YPDVELELVEGDSEELLDLLAEGELDLAIRRGPPDDPGLEARPLFE 75
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 29.6 bits (67), Expect = 9.9
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 518 KNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGRMGR-GFFLLHYFSFFF 576
+ + F +L L + + I +S A + +F++ SFF
Sbjct: 126 RKLSLILFYITFIFSLIYLYEKLLI------VSSGGYLAYYQSFLSSLPYFIILIGSFFP 179
Query: 577 FAFLRLAFLYLITGNLEKLKKMMKI 601
AF LYL T KK++ I
Sbjct: 180 IAF----CLYLAT--KPSKKKILFI 198
>gnl|CDD|163144 TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer
pathway protein. This protein family was identified, by
the method of partial phylogenetic profiling, as related
to the use of tetrahydromethanopterin (H4MPT) as a C-1
carrier. Characteristic markers of the H4MPT-linked C1
transfer pathway include formylmethanofuran
dehydrogenase subunits, methenyltetrahydromethanopterin
cyclohydrolase, etc. Tetrahydromethanopterin, a
tetrahydrofolate analog, occurs in methanogenic archaea,
bacterial methanotrophs, planctomycetes, and a few other
lineages [Central intermediary metabolism, One-carbon
metabolism].
Length = 318
Score = 29.2 bits (66), Expect = 9.9
Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 714 LLCREADHVILFDVQQ-KRALAQVKVAKCRHVVTKKMSSVGCEEIFYAGTGALLCREADH 772
++C + + + DV+ + + ++ + + + + G + + AG G L +EA
Sbjct: 237 MVCADLEELGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKTVVAAGAGEFLAKEAAA 296
Query: 773 VILFDV 778
+ +
Sbjct: 297 RLGREC 302
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.421
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 50,778,621
Number of extensions: 5063603
Number of successful extensions: 4412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4335
Number of HSP's successfully gapped: 56
Length of query: 992
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 886
Effective length of database: 6,236,078
Effective search space: 5525165108
Effective search space used: 5525165108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (28.4 bits)