BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2686
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2
Length = 1224
Score = 186 bits (471), Expect = 4e-47, Method: Composition-based stats.
Identities = 85/139 (61%), Positives = 101/139 (72%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL +ET RK+ K Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT
Sbjct: 1062 VGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
A+FA RLLELGP EVA Q RK+L+ C NPTD + ++YD HNPF ICA SY PIY G+
Sbjct: 1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181
Query: 121 SEACVYCGASYLPKYKGEL 139
E C GA Y P++KG++
Sbjct: 1182 VEKCPLSGACYSPEFKGQI 1200
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 182 bits (463), Expect = 4e-46, Method: Composition-based stats.
Identities = 85/139 (61%), Positives = 99/139 (71%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL ME RK+ K Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT
Sbjct: 1062 VGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
A+FA RLLELGP EVA Q RK+L+ C NPTD ++YD HNPF ICA SY PIY G+
Sbjct: 1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKP 1181
Query: 121 SEACVYCGASYLPKYKGEL 139
E C GA Y P++KG++
Sbjct: 1182 VEKCPLSGACYSPEFKGQI 1200
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 101/139 (72%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL MET RK+ K Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN++T
Sbjct: 1062 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTA 1121
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
A+FA RLLELGP EVA Q RK+L+ C NPTD + ++YD HNPF ICA SY PIY G+
Sbjct: 1122 AAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181
Query: 121 SEACVYCGASYLPKYKGEL 139
E C GA Y P++KG++
Sbjct: 1182 VEKCPLSGACYSPEFKGQI 1200
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1
Length = 1221
Score = 130 bits (328), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 4/143 (2%)
Query: 1 MGLQMETYRKEQL--KSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYK 58
+G+++E RKE +S+ R ELAAYFTH L P H IL+LR+A N +K+K++
Sbjct: 1056 LGIKIELQRKELSIGAQKDSTLGRQAELAAYFTHCNLDPSHLILSLRSAMNCAYKVKHFN 1115
Query: 59 TTASFAHRLLELGPSMEVATQARKLLAICNANPT--DEHTIDYDEHNPFQICARSYTPIY 116
ASFA RL+ L P+ ++ATQA+K+ PT D ++YDE NPF ICA SY PIY
Sbjct: 1116 LAASFARRLISLNPNPDLATQAKKVFNFAQQTPTPSDIQQLNYDERNPFVICAHSYVPIY 1175
Query: 117 HGRESEACVYCGASYLPKYKGEL 139
G C YC + YLP +KG++
Sbjct: 1176 KGSPLIKCPYCSSCYLPTHKGKV 1198
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 115 bits (289), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GLQME R+E + VR ELAAYFTH LQ H L L +A + +K KN T
Sbjct: 1058 LGLQMELKRREM----KDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATA 1113
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
++FA RLLE P A AR+++ N TDE ++YD NPF +C +Y PIY G++
Sbjct: 1114 SNFARRLLETSPVDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQK 1173
Query: 121 SEACVYCGASYLPKYKGEL 139
+C YC A ++P +G +
Sbjct: 1174 DVSCPYCTARFVPNQEGNI 1192
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 112 bits (281), Expect = 5e-25, Method: Composition-based stats.
Identities = 59/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GLQ+E R+E + VR ELAAYFTH KLQ H L +A + +K KN T
Sbjct: 1059 LGLQLELKRREM----KDDPVRQQELAAYFTHCKLQTPHLRLAYFSAMTVCYKSKNMATA 1114
Query: 61 ASFAHRLLELGPSMEV-ATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGR 119
A FA LL+ P++E A AR+++ N TD T++YD NPF IC +Y PIY G+
Sbjct: 1115 AHFARSLLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQ 1174
Query: 120 ESEACVYCGASYLPKYKGEL 139
+ AC YC A ++P +G +
Sbjct: 1175 KDVACPYCTARFVPSQEGNI 1194
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL+ME RKE L+ + + Q ELAAYFT+ KLQ VH L L +A L +K KN+ T
Sbjct: 1061 LGLRMELKRKE-LRDDVNRQQ---ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATA 1116
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
FA LLE P+ A +AR++ C+ D ++YD NPF +C +Y PIY G++
Sbjct: 1117 EHFARMLLENNPNEAQARRARQVQQQCSGK-KDSSELNYDYRNPFVVCGATYVPIYRGQK 1175
Query: 121 SEACVYCGASYLPKYKGEL 139
+C YCG+ ++P +G+L
Sbjct: 1176 DVSCPYCGSRFVPSIEGQL 1194
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL+ME RKE L+ + + Q ELAAYFT+ KLQ VH L L +A L +K KN+ T
Sbjct: 1061 LGLRMELKRKE-LRDDVNRQQ---ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATA 1116
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
FA LLE P+ A +AR++ C+ D ++YD NPF +C +Y PIY G++
Sbjct: 1117 EHFARMLLENNPNEAQARRARQVQQQCSGK-KDSSELNYDYRNPFVVCGATYVPIYRGQK 1175
Query: 121 SEACVYCGASYLPKYKGEL 139
+C YCG+ ++P +G+L
Sbjct: 1176 DVSCPYCGSRFVPSIEGQL 1194
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 110 bits (275), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL+ME RKE L+ + + Q ELAAYFT+ KLQ VH L L +A L +K KN+ T
Sbjct: 1061 LGLRMELKRKE-LRDDVNRQQ---ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATA 1116
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
FA LLE P+ A +AR++ C+ D ++YD NPF +C +Y PIY G++
Sbjct: 1117 EHFARMLLENNPNESQAKRARQVQQQCSGK-KDSCELNYDYRNPFVVCGATYVPIYRGQK 1175
Query: 121 SEACVYCGASYLPKYKGEL 139
+C YCG+ ++P +G+L
Sbjct: 1176 DVSCPYCGSRFVPSIEGQL 1194
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%)
Query: 11 EQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLEL 70
E+ + E R EL+ YF + LQP+H I+ LR A N KLKNYK+ + ++LL+L
Sbjct: 1059 ERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118
Query: 71 GPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGAS 130
S A A + + + + NP D I+YD H +IC ++ TP+Y G + + C CGA
Sbjct: 1119 AESGPAAEAANRAITLGDRNPHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCSVCGAV 1178
Query: 131 YLPKYKGEL 139
Y Y E+
Sbjct: 1179 YHKGYVNEV 1187
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
+GL +E R+ LK E + VR+ ELAAYFT +KL P+H+ L+ A + FK KN+
Sbjct: 1046 LGLSIELERR-SLK--EGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQA 1102
Query: 61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
+ FA L++ S A QARK+ ++ +D ID+D + F ICA +Y PIY
Sbjct: 1103 SYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTP 1162
Query: 121 SEACVYCGASYLPKYKGEL 139
S + G+ Y+ K ++
Sbjct: 1163 SVSDPLTGSKYVITEKDKI 1181
>sp|P53041|PPP5_HUMAN Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C
PE=1 SV=1
Length = 499
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 44 LRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKL 83
L+T N +FK K+Y+ F + +EL PS + R L
Sbjct: 31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSL 70
>sp|P53042|PPP5_RAT Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus
GN=Ppp5c PE=2 SV=1
Length = 499
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 44 LRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKL 83
L+T N +FK K+Y+ F + +EL PS + R L
Sbjct: 31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSL 70
>sp|Q59ZY9|CTU2_CANAL Cytoplasmic tRNA 2-thiolation protein 2 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NCS2 PE=3 SV=1
Length = 452
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 10 KEQLKSNESSQVRICELAAYFTHSKLQP--VHQILTLRTATNLFFK---LKNYKTTASFA 64
+E L++ S+ V++ EL Y S +Q +++ LT+R T +FK Y +TAS
Sbjct: 262 REILQAEISAYVKLAELNKYVISSTVQKSKINKNLTIRDLTTNYFKQLDATGYASTASTV 321
Query: 65 HRLLE-LGPSMEVATQARKLLAICNANPTD 93
+ E LG V Q + A + NP++
Sbjct: 322 AKTGEKLGSPSNVLCQCQICGADIHQNPSN 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,317,617
Number of Sequences: 539616
Number of extensions: 1683532
Number of successful extensions: 3698
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3670
Number of HSP's gapped (non-prelim): 17
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)