RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2686
         (139 letters)



>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
           beta-hairpin, alpha-solenoi transport protein; 2.60A
           {Bos taurus}
          Length = 320

 Score =  185 bits (470), Expect = 2e-59
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL MET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN++T 
Sbjct: 158 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTA 217

Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct: 218 AAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 277

Query: 121 SEACVYCGASYLPKYKGEL 139
            E C   GA Y P++KG++
Sbjct: 278 VEKCPLSGACYSPEFKGQI 296


>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
           complex I, protein TRAN; 2.90A {Saccharomyces
           cerevisiae} PDB: 3mv3_A
          Length = 325

 Score =  178 bits (452), Expect = 1e-56
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL +E  R+   + N     R+ ELAAYFT +KL P+H+   L+ A +  FK KN+   
Sbjct: 170 LGLSIELERRSLKEGNTV---RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQA 226

Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           + FA   L++  S   A QARK+    ++  +D   ID+D +  F ICA +Y PIY    
Sbjct: 227 SYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTP 286

Query: 121 SEACVYCGASYLPKYKGEL 139
           S +    G+ Y+   K ++
Sbjct: 287 SVSDPLTGSKYVITEKDKI 305


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.55
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 26/91 (28%)

Query: 30  FTHSKLQ-PVHQILT---LRT-ATNLFFKLKNY---------KTTASFAHRLLELGPS-- 73
           F    +Q PV+       LR  + ++  ++ +           TT   A  +L+ GP   
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509

Query: 74  ---------MEVATQARKLLA-ICNANPTDE 94
                     +  T  R ++A   + NP D+
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540



 Score = 26.9 bits (59), Expect = 3.2
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 28/80 (35%)

Query: 31  THSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNAN 90
           +H  L+  H +L     T  FF                       +A+Q ++        
Sbjct: 12  SHGSLE--HVLLV---PTASFF-----------------------IASQLQEQFNKILPE 43

Query: 91  PTDEHTIDYDEHNPFQICAR 110
           PT+    D +   P ++  +
Sbjct: 44  PTEGFAADDEPTTPAELVGK 63


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 0.77
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 12/39 (30%)

Query: 10 KEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTAT 48
          K+ LK  ++S      L  Y   S   P    L ++ AT
Sbjct: 19 KQALKKLQAS------LKLYADDSA--PA---LAIK-AT 45


>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural
           genomics consortium, SGC, WD repeat, acetylation,
           ATP-binding; 1.90A {Homo sapiens}
          Length = 304

 Score = 27.8 bits (61), Expect = 1.3
 Identities = 14/56 (25%), Positives = 20/56 (35%)

Query: 15  SNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLEL 70
            NE    +         + K +P +Q+L LRT  N F      K   S    L+  
Sbjct: 140 CNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSH 195


>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
          Length = 105

 Score = 26.5 bits (58), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 67 LLELGPSMEVATQARKLLAICNANPTDEHTI 97
          LL LG S   A QA+ L+ +   NP     +
Sbjct: 49 LLSLGYSHSSAAQAKGLIQVGKWNPVPLSYV 79


>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose
           isomerization, hydride shift; 1.60A {Escherichia coli}
           SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
          Length = 426

 Score = 25.7 bits (56), Expect = 5.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 83  LLAICNANPTDEHTIDYDEHNPFQICARSYT 113
           L  + +      H ID  E   F I A SYT
Sbjct: 215 LDEVISEKLNPAHHIDAVESKLFGIGAESYT 245


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,954,748
Number of extensions: 98149
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 14
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)