RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2686
         (139 letters)



>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
           [TaxId: 562]}
          Length = 416

 Score = 26.3 bits (58), Expect = 1.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 85  AICNANPTDEHTIDYDEHNPFQICARSYT 113
            + +      H ID  E   F I A SYT
Sbjct: 208 EVISEKLNPAHHIDAVESKLFGIGAESYT 236


>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId:
           219653]}
          Length = 168

 Score = 24.3 bits (52), Expect = 5.7
 Identities = 6/38 (15%), Positives = 11/38 (28%)

Query: 72  PSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICA 109
             + V +  R    I + +    +    D H    I  
Sbjct: 55  AVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEV 92


>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 124

 Score = 23.6 bits (51), Expect = 6.7
 Identities = 8/51 (15%), Positives = 16/51 (31%)

Query: 34  KLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLL 84
           K     +   L   T   +KL  Y     +   L E   + +     + ++
Sbjct: 66  KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 116


>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 537

 Score = 24.4 bits (52), Expect = 7.7
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 48  TNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDE 101
           TN  F         S+       G ++E    A+ L+A  + + T + TID   
Sbjct: 343 TNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVL 396


>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
           4932]}
          Length = 135

 Score = 23.6 bits (51), Expect = 8.1
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 95  HTIDYDEHNPFQICARSYTPIYHGRESEAC 124
            +   D   PF I  +++        +EAC
Sbjct: 105 LSFTLDYVYPFTIIKQNFNKFMQKLLNEAC 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,776
Number of extensions: 19085
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)