BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2688
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/319 (44%), Positives = 193/319 (60%), Gaps = 48/319 (15%)
Query: 109 TTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVP 168
++ L++TL+QY TCPFC KVRAFLD++ + Y +VEVN VLR +IK+SSY+KVPIL+ +
Sbjct: 10 SSRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEG 69
Query: 169 NGYQQMNDSSMIVSCLASYLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLND 228
QQ+NDSS+I+S L +YL + LEE+ +Y+P + +D G E N+Y+LMLN+
Sbjct: 70 ESSQQLNDSSVIISALKTYLV-SGQPLEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNE 128
Query: 229 R-----MNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEALQSFEWFSEEQGRGQK 283
+ +G+ + +E KWR+WAD LVH +SPNVYRT EAL SF++ E G+
Sbjct: 129 KEAQQVYSGKEAR--TEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVRE-GK--- 182
Query: 284 HLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKK 343
F E + Y+GA AMY ISKRLK
Sbjct: 183 ----------------------------------FGAVEGAVAKYMGAAAMYLISKRLKS 208
Query: 344 RHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDL 403
RH L++ VRE LY+ ++WV + K + PF GGQKPNLADLAVYGVL +EG +AF DL
Sbjct: 209 RHRLQDNVREDLYEAADKWVAAVGK--DRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDL 266
Query: 404 MAKSKIKPWYERMRTNVTN 422
M + I+PWY R+ +T
Sbjct: 267 MQHTHIQPWYLRVERAITE 285
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 545 TTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR 585
++ L++TL+QY TCPFC KVRAFLD++ + Y +VEVN VLR
Sbjct: 10 SSRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLR 50
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQI 152
+I L+ P CP+C + R LD GV Y ++ + LRQ++
Sbjct: 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEM 46
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ 586
+I L+ P CP+C + R LD GV Y ++ + LRQ
Sbjct: 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQ 44
>pdb|2M46|A Chain A, Solution Nmr Structure Of Sacol0876 From Staphylococcus
Aureus Col, Nesg Target Zr353 And Csgid Target Idp00841
Length = 142
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 144
I +QY C C K FLD YGVSY+ +++
Sbjct: 26 IKFYQYKNCTTCKKAAKFLDEYGVSYEPIDI 56
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580
I +QY C C K FLD YGVSY+ +++
Sbjct: 26 IKFYQYKNCTTCKKAAKFLDEYGVSYEPIDI 56
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 98 ENMFQVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDYYGVSYD 140
+ + + P+ I++F P CPFC K + L G+S++
Sbjct: 156 DTXLKYLAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFE 198
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 540 VVPEDTTGLKITLFQYPTCPFCCKVRAFLDYYGVSYD 576
+ P+ I++F P CPFC K + L G+S++
Sbjct: 162 LAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFE 198
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 338 SKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKP-NLADLAVYGVLSSIEG 396
+K LK+ + + EV+ L N+ V EK+ N G P NL D ++
Sbjct: 129 AKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDD--------KVKL 180
Query: 397 CEAFKDLMAKSKIKPWYERMRT 418
E F +L+ K ++ +YE + +
Sbjct: 181 SEPFXELVDKDELPEYYEIVHS 202
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 338 SKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKP-NLADLAVYGVLSSIEG 396
+K LK+ + + EV+ L N+ V EK+ N G P NL D ++
Sbjct: 123 AKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDD--------KVKL 174
Query: 397 CEAFKDLMAKSKIKPWYERMRT 418
E F +L+ K ++ +YE + +
Sbjct: 175 SEPFXELVDKDELPEYYEIVHS 196
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQ-IKWSSYKKVPILLV 165
+ ++ TCP+C + +A L GVS+ + + NA R++ IK S VP + +
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI 57
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 338 SKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKP-NLADLAVYGVLSSIEG 396
+K LK+ + + EV+ L N+ V EK+ N G P NL D ++
Sbjct: 164 AKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDD--------KVKL 215
Query: 397 CEAFKDLMAKSKIKPWYE 414
E F +L+ K ++ +YE
Sbjct: 216 SEPFMELVDKDELPEYYE 233
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 338 SKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKP-NLADLAVYGVLSSIEG 396
+K LK+ + + EV+ L N+ V EK+ N G P NL D ++
Sbjct: 179 AKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDD--------KVKL 230
Query: 397 CEAFKDLMAKSKIKPWYE 414
E F +L+ K ++ +YE
Sbjct: 231 SEPFMELVDKDELPEYYE 248
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|2BPL|A Chain A, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|B Chain B, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|C Chain C, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
Length = 608
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 394 IEGCEAFKDLMAKSKIKPWYERMRTNVTNHLGNEYVKHFATQKANVLRC-------NGRR 446
IE E ++ + K++ + T V HL N +K T + VLR G
Sbjct: 101 IENHEPLREEL-KARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV 159
Query: 447 FLSTR-PPIVQASFFGNPIVIGLGLG 471
+ +R P + A+ G+P+VIGLG+G
Sbjct: 160 IMDSRHPDTLLAARSGSPLVIGLGMG 185
>pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|B Chain B, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|C Chain C, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|D Chain D, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|E Chain E, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|F Chain F, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|G Chain G, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|H Chain H, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
Length = 608
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 394 IEGCEAFKDLMAKSKIKPWYERMRTNVTNHLGNEYVKHFATQKANVLRC-------NGRR 446
IE E ++ + K++ + T V HL N +K T + VLR G
Sbjct: 101 IENHEPLREEL-KARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV 159
Query: 447 FLSTR-PPIVQASFFGNPIVIGLGLG 471
+ +R P + A+ G+P+VIGLG+G
Sbjct: 160 IMDSRHPDTLLAARSGSPLVIGLGMG 185
>pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2J6H|B Chain B, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2VF4|X Chain X, E. Coli Glucosamine-6-P Synthase
pdb|2VF5|X Chain X, Glucosamine-6-Phosphate Synthase In Complex With
Glucosamine-6-Phosphate
Length = 608
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 394 IEGCEAFKDLMAKSKIKPWYERMRTNVTNHLGNEYVKHFATQKANVLRC-------NGRR 446
IE E ++ + K++ + T V HL N +K T + VLR G
Sbjct: 101 IENHEPLREEL-KARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV 159
Query: 447 FLSTR-PPIVQASFFGNPIVIGLGLG 471
+ +R P + A+ G+P+VIGLG+G
Sbjct: 160 IMDSRHPDTLLAARSGSPLVIGLGMG 185
>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
Length = 604
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 152 IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYLSDTSVQLEEVASYFPETEYRDDD 211
I S + PIL + N ++D S ++ S+L D ++ + P+ R
Sbjct: 263 IALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRK----LRPDVVIRFGP 318
Query: 212 GTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEE----- 266
V K + FL L D + + ++DE + Q H + N EE
Sbjct: 319 MPVSKPV----FLWLKDDPTIQQI--VIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGL 372
Query: 267 --ALQSFEWFSEEQ---GRGQKHL----------DFHVIKTTQKLYLKRAYAFVKNLDTV 311
A +S EW + Q GR ++HL + ++ + Q L + + FV N +
Sbjct: 373 TAATRSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPI 432
Query: 312 GEWDKHFSKWERLLMVY 328
+ D F K +R +Y
Sbjct: 433 RDVDTFFEKQDRPFRIY 449
>pdb|1XFF|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFF|B Chain B, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFG|A Chain A, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
pdb|1XFG|B Chain B, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
Length = 240
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 394 IEGCEAFKDLMAKSKIKPWYERMRTNVTNHLGNEYVKHFATQKANVLRC-------NGRR 446
IE E ++ + K++ + T V HL N +K T + VLR G
Sbjct: 101 IENHEPLREEL-KARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV 159
Query: 447 FLSTR-PPIVQASFFGNPIVIGLGLG 471
+ +R P + A+ G+P+VIGLG+G
Sbjct: 160 IMDSRHPDTLLAARSGSPLVIGLGMG 185
>pdb|3GX0|A Chain A, Crystal Structure Of Gsh-Dependent Disulfide Bond
Oxidoreductase
Length = 215
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 358 ECNQWVKTIEKR-ENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERM 416
E + + KR EN P+ GG+ ++AD+A + +++ DL +K W+ER+
Sbjct: 136 ETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAW--TRQRIDLAMYPAVKNWHERI 193
Query: 417 RT 418
R+
Sbjct: 194 RS 195
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 184 LASYLSDTSVQLEEVASYFPETEYRDDD---GTVKKEIMNRYFLMLNDRM 230
L S L+D S + EV S Y+D + GT +N +LM+N++M
Sbjct: 70 LMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQM 119
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 113 KITLFQYPTCPFCCKVRAFLDYYGVSY 139
KI ++ + TCPFC + A L GV +
Sbjct: 17 KIEIYTWSTCPFCMRALALLKRKGVEF 43
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 549 KITLFQYPTCPFCCKVRAFLDYYGVSY 575
KI ++ + TCPFC + A L GV +
Sbjct: 17 KIEIYTWSTCPFCMRALALLKRKGVEF 43
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 184 LASYLSDTSVQLEEVASYFPETEYRDDD---GTVKKEIMNRYFLMLNDRM 230
L S L+D S + EV S Y+D + GT +N +LM+N++M
Sbjct: 62 LMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQM 111
>pdb|4FIW|A Chain A, X-ray Crystal Structure Of Corynebacterium Glutamicum
Nrdh-redoxin At 1.5a
Length = 77
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIKWSSYKKVPILL 164
+ IT++ P C C + LD G+ YD+V++ + R+ + Y + P+++
Sbjct: 1 MAITVYTKPACVQCNATKKALDRAGLEYDLVDISLDEEAREYVLALGYLQAPVVV 55
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 548 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581
+ IT++ P C C + LD G+ YD+V+++
Sbjct: 1 MAITVYTKPACVQCNATKKALDRAGLEYDLVDIS 34
>pdb|1R7H|A Chain A, Nrdh-Redoxin Of Corynebacterium Ammoniagenes Forms A
Domain- Swapped Dimer
pdb|1R7H|B Chain B, Nrdh-Redoxin Of Corynebacterium Ammoniagenes Forms A
Domain- Swapped Dimer
Length = 75
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 145
+ ITL+ P C C + LD G++Y+ V+++
Sbjct: 1 MSITLYTKPACVQCTATKKALDRAGLAYNTVDIS 34
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 548 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581
+ ITL+ P C C + LD G++Y+ V+++
Sbjct: 1 MSITLYTKPACVQCTATKKALDRAGLAYNTVDIS 34
>pdb|3FZ4|A Chain A, The Crystal Structure Of A Possible Arsenate Reductase
From Streptococcus Mutans Ua159
Length = 120
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 144
+T ++YP C C + +A LD YD +++
Sbjct: 5 LTFYEYPKCSTCRRAKAELDDLAWDYDAIDI 35
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580
+T ++YP C C + +A LD YD +++
Sbjct: 5 LTFYEYPKCSTCRRAKAELDDLAWDYDAIDI 35
>pdb|1JLW|A Chain A, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|1JLW|B Chain B, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|3F63|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3F63|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3G7I|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
pdb|3G7I|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
Length = 219
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 376 GGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV----TNHLGNEYVKH 431
GG P +ADL++ +++ E A DL ++ WYER V N G +
Sbjct: 157 GGDDPTIADLSILATIATYE--VAGYDLRRYENVQRWYERTSAIVPGADKNVEGAKVFGR 214
Query: 432 FATQK 436
+ TQK
Sbjct: 215 YFTQK 219
>pdb|3F6D|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
pdb|3F6D|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
Length = 219
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 376 GGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV----TNHLGNEYVKH 431
GG P +ADL++ +++ E A DL ++ WYER V N G +
Sbjct: 157 GGDDPTIADLSILATIATYE--VAGYDLRRYENVQRWYERTSAIVPGADKNVEGAKVFGR 214
Query: 432 FATQK 436
+ TQK
Sbjct: 215 YFTQK 219
>pdb|3G7J|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
pdb|3G7J|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
Length = 219
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 376 GGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV----TNHLGNEYVKH 431
GG P +ADL++ +++ E A DL ++ WYER V N G +
Sbjct: 157 GGDDPTIADLSILATIATYE--VAGYDLRRYENVQRWYERTSAIVPGADKNVEGAKVFGR 214
Query: 432 FATQK 436
+ TQK
Sbjct: 215 YFTQK 219
>pdb|3ZIT|A Chain A, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Mutant T8a
pdb|3ZIT|B Chain B, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Mutant T8a
Length = 78
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQI--KWSSYKKVPILLV--K 166
KI ++ P CP C V+ FL + V+Y+ +V +A R ++ + SY P +++ +
Sbjct: 3 KIEVYAQPDCPPCVIVKEFLKHNNVAYEEFDVKKDAAARNRLLYDYDSY-STPTVVIDGE 61
Query: 167 VPNGYQ 172
V G+Q
Sbjct: 62 VVAGFQ 67
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580
KI ++ P CP C V+ FL + V+Y+ +V
Sbjct: 3 KIEVYAQPDCPPCVIVKEFLKHNNVAYEEFDV 34
>pdb|3ZIJ|A Chain A, Crystal Structure Of The Thioredoxin-like Protein Bc3987
pdb|3ZIJ|B Chain B, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Length = 78
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQI--KWSSYKKVPILLV--K 166
KI ++ P CP C V+ FL + V+Y+ +V +A R ++ + SY P +++ +
Sbjct: 3 KIEVYTQPDCPPCVIVKEFLKHNNVAYEEFDVKKDAAARNRLLYDYDSY-STPTVVIDGE 61
Query: 167 VPNGYQ 172
V G+Q
Sbjct: 62 VVAGFQ 67
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580
KI ++ P CP C V+ FL + V+Y+ +V
Sbjct: 3 KIEVYTQPDCPPCVIVKEFLKHNNVAYEEFDV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,084,485
Number of Sequences: 62578
Number of extensions: 783086
Number of successful extensions: 1996
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1965
Number of HSP's gapped (non-prelim): 53
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)