Query psy2688
Match_columns 586
No_of_seqs 419 out of 2590
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 22:40:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3029|consensus 100.0 2.5E-63 5.5E-68 496.7 20.7 322 32-427 39-363 (370)
2 cd03197 GST_C_mPGES2 GST_C fam 100.0 4.1E-29 8.8E-34 234.7 13.2 144 238-421 5-148 (149)
3 PRK09481 sspA stringent starva 99.9 3E-22 6.4E-27 196.2 20.6 184 112-422 9-196 (211)
4 PRK10387 glutaredoxin 2; Provi 99.9 7.6E-21 1.7E-25 184.4 18.2 205 114-421 1-206 (210)
5 COG0625 Gst Glutathione S-tran 99.8 3.1E-20 6.8E-25 181.3 17.2 193 114-421 1-197 (211)
6 PLN02473 glutathione S-transfe 99.8 4.1E-20 8.9E-25 180.3 16.8 195 113-421 2-204 (214)
7 PRK15113 glutathione S-transfe 99.8 8.7E-20 1.9E-24 179.1 18.8 102 111-253 3-114 (214)
8 PRK13972 GSH-dependent disulfi 99.8 1.3E-19 2.7E-24 177.7 17.3 190 113-421 1-198 (215)
9 PRK10542 glutathionine S-trans 99.8 2.1E-19 4.5E-24 173.2 16.5 183 114-421 1-190 (201)
10 TIGR01262 maiA maleylacetoacet 99.8 6.2E-19 1.4E-23 171.0 18.2 191 115-421 1-197 (210)
11 TIGR02182 GRXB Glutaredoxin, G 99.8 5.2E-19 1.1E-23 173.8 17.5 69 115-186 1-70 (209)
12 PLN02395 glutathione S-transfe 99.8 7.4E-19 1.6E-23 171.4 18.0 194 113-421 2-203 (215)
13 PRK10357 putative glutathione 99.8 1.6E-18 3.4E-23 167.8 18.5 190 114-421 1-193 (202)
14 KOG0406|consensus 99.8 1.6E-18 3.5E-23 173.3 17.7 186 112-420 8-203 (231)
15 PRK11752 putative S-transferas 99.8 4.1E-18 9E-23 173.7 19.2 193 113-422 44-252 (264)
16 PLN02378 glutathione S-transfe 99.7 1.1E-16 2.4E-21 157.6 16.4 65 118-186 16-82 (213)
17 PTZ00057 glutathione s-transfe 99.7 3.6E-16 7.7E-21 152.8 18.5 72 112-187 3-82 (205)
18 PLN02817 glutathione dehydroge 99.7 2.6E-16 5.7E-21 161.2 16.4 64 119-186 70-135 (265)
19 KOG0867|consensus 99.7 4.7E-16 1E-20 155.6 16.8 193 112-421 1-202 (226)
20 TIGR00862 O-ClC intracellular 99.7 8.1E-16 1.8E-20 155.3 17.9 64 119-186 16-81 (236)
21 KOG0868|consensus 99.6 3E-15 6.6E-20 143.4 12.5 190 113-421 5-200 (217)
22 cd03040 GST_N_mPGES2 GST_N fam 99.5 1.7E-14 3.6E-19 119.5 8.4 76 113-188 1-76 (77)
23 KOG4244|consensus 99.5 2.3E-13 5E-18 137.6 15.1 218 110-420 42-274 (281)
24 KOG4420|consensus 99.5 5.2E-13 1.1E-17 134.4 14.0 70 113-186 26-100 (325)
25 cd03041 GST_N_2GST_N GST_N fam 99.5 1.8E-13 3.9E-18 114.2 8.1 72 113-186 1-75 (77)
26 cd03037 GST_N_GRX2 GST_N famil 99.4 4.9E-13 1.1E-17 109.2 6.8 69 114-185 1-70 (71)
27 PLN02907 glutamate-tRNA ligase 99.4 4.5E-12 9.8E-17 145.7 17.2 60 113-186 2-61 (722)
28 PF13417 GST_N_3: Glutathione 99.4 1.7E-12 3.7E-17 107.7 7.9 67 116-186 1-69 (75)
29 cd03045 GST_N_Delta_Epsilon GS 99.3 2.6E-12 5.7E-17 105.1 7.5 68 114-185 1-73 (74)
30 TIGR02190 GlrX-dom Glutaredoxi 99.3 4.2E-12 9E-17 106.9 8.1 77 105-185 1-79 (79)
31 cd03059 GST_N_SspA GST_N famil 99.3 4.8E-12 1E-16 103.1 7.9 69 114-186 1-71 (73)
32 cd03051 GST_N_GTT2_like GST_N 99.3 6.4E-12 1.4E-16 101.9 7.1 68 114-184 1-73 (74)
33 cd03052 GST_N_GDAP1 GST_N fami 99.3 8E-12 1.7E-16 103.8 7.3 67 114-184 1-72 (73)
34 cd03060 GST_N_Omega_like GST_N 99.3 8.6E-12 1.9E-16 102.1 7.3 67 115-184 2-70 (71)
35 cd03055 GST_N_Omega GST_N fami 99.3 1.4E-11 3.1E-16 105.7 8.1 73 109-184 14-88 (89)
36 cd03058 GST_N_Tau GST_N family 99.3 1.6E-11 3.5E-16 101.0 7.8 69 114-186 1-72 (74)
37 cd03056 GST_N_4 GST_N family, 99.3 1.3E-11 2.8E-16 100.2 7.1 67 114-184 1-72 (73)
38 cd03080 GST_N_Metaxin_like GST 99.2 2.9E-11 6.2E-16 100.3 8.5 65 113-186 1-72 (75)
39 cd03053 GST_N_Phi GST_N family 99.2 4.3E-11 9.3E-16 98.5 8.1 69 114-186 2-75 (76)
40 KOG1695|consensus 99.2 5E-10 1.1E-14 111.2 16.9 72 112-187 2-75 (206)
41 cd03039 GST_N_Sigma_like GST_N 99.2 3.9E-11 8.4E-16 98.3 7.1 68 114-185 1-71 (72)
42 cd00570 GST_N_family Glutathio 99.2 5.1E-11 1.1E-15 93.4 7.5 67 114-184 1-70 (71)
43 cd03061 GST_N_CLIC GST_N famil 99.2 7E-11 1.5E-15 103.2 8.8 63 120-186 20-84 (91)
44 KOG3029|consensus 99.2 1E-11 2.3E-16 126.2 4.0 85 459-586 41-127 (370)
45 cd03076 GST_N_Pi GST_N family, 99.2 7.4E-11 1.6E-15 97.5 7.5 69 114-186 2-72 (73)
46 cd03050 GST_N_Theta GST_N fami 99.2 9.7E-11 2.1E-15 96.8 7.8 69 114-186 1-74 (76)
47 cd03202 GST_C_etherase_LigE GS 99.2 1.7E-10 3.6E-15 105.0 9.9 119 242-418 3-123 (124)
48 cd03049 GST_N_3 GST_N family, 99.1 8.7E-11 1.9E-15 96.3 7.0 68 114-184 1-72 (73)
49 cd03048 GST_N_Ure2p_like GST_N 99.1 1.2E-10 2.6E-15 97.4 7.9 72 113-186 1-77 (81)
50 cd03054 GST_N_Metaxin GST_N fa 99.1 1.5E-10 3.2E-15 94.9 8.0 64 114-186 1-71 (72)
51 cd03044 GST_N_EF1Bgamma GST_N 99.1 1E-10 2.2E-15 96.9 6.7 69 115-186 2-74 (75)
52 cd03047 GST_N_2 GST_N family, 99.1 1.2E-10 2.7E-15 95.7 7.1 67 114-184 1-72 (73)
53 cd03038 GST_N_etherase_LigE GS 99.1 1.6E-10 3.5E-15 97.6 7.6 64 120-186 14-81 (84)
54 cd03029 GRX_hybridPRX5 Glutare 99.1 2.1E-10 4.5E-15 94.3 7.6 68 113-184 2-71 (72)
55 cd03042 GST_N_Zeta GST_N famil 99.1 1.9E-10 4.1E-15 93.5 7.1 67 114-184 1-72 (73)
56 COG2999 GrxB Glutaredoxin 2 [P 99.1 9.2E-10 2E-14 106.0 12.8 70 114-186 1-71 (215)
57 cd03057 GST_N_Beta GST_N famil 99.0 6.5E-10 1.4E-14 92.0 7.5 69 114-186 1-74 (77)
58 PF13409 GST_N_2: Glutathione 99.0 4.8E-10 1E-14 92.2 6.6 63 121-186 1-69 (70)
59 KOG1422|consensus 99.0 8.1E-09 1.8E-13 101.9 14.1 64 120-187 19-84 (221)
60 cd03046 GST_N_GTT1_like GST_N 99.0 2.1E-09 4.7E-14 88.1 7.7 68 114-186 1-73 (76)
61 PRK10638 glutaredoxin 3; Provi 98.9 2.5E-09 5.4E-14 90.6 7.5 67 113-183 3-72 (83)
62 cd03077 GST_N_Alpha GST_N fami 98.9 5E-09 1.1E-13 88.2 8.0 69 114-186 2-74 (79)
63 cd03027 GRX_DEP Glutaredoxin ( 98.9 3.7E-09 7.9E-14 87.2 7.1 66 113-182 2-70 (73)
64 COG0695 GrxC Glutaredoxin and 98.9 4.8E-09 1E-13 89.3 7.9 69 112-184 1-74 (80)
65 cd03075 GST_N_Mu GST_N family, 98.9 5E-09 1.1E-13 89.0 7.4 68 115-186 2-80 (82)
66 PF02798 GST_N: Glutathione S- 98.9 4.7E-09 1E-13 87.7 7.1 69 113-186 2-76 (76)
67 PRK11200 grxA glutaredoxin 1; 98.9 8.2E-09 1.8E-13 87.7 8.0 73 112-188 1-83 (85)
68 cd03043 GST_N_1 GST_N family, 98.8 7.2E-09 1.6E-13 85.8 6.7 63 118-184 6-72 (73)
69 TIGR02183 GRXA Glutaredoxin, G 98.8 1.5E-08 3.3E-13 86.8 7.9 70 114-187 2-81 (86)
70 TIGR02189 GlrX-like_plant Glut 98.8 2.4E-08 5.1E-13 88.2 8.3 69 111-183 7-81 (99)
71 cd03418 GRX_GRXb_1_3_like Glut 98.8 2E-08 4.4E-13 82.4 7.3 66 114-183 2-71 (75)
72 PRK10329 glutaredoxin-like pro 98.8 1.7E-08 3.7E-13 86.0 6.7 56 112-167 1-58 (81)
73 cd02066 GRX_family Glutaredoxi 98.7 3E-08 6.5E-13 78.8 7.3 66 113-182 1-69 (72)
74 TIGR02181 GRX_bact Glutaredoxi 98.7 3.5E-08 7.6E-13 82.3 7.2 67 114-184 1-70 (79)
75 PHA03050 glutaredoxin; Provisi 98.7 4.1E-08 8.8E-13 88.3 7.7 67 112-182 13-88 (108)
76 TIGR00365 monothiol glutaredox 98.7 4.4E-08 9.6E-13 86.1 7.7 68 112-183 12-87 (97)
77 cd03188 GST_C_Beta GST_C famil 98.7 1.2E-07 2.5E-12 82.8 9.4 60 357-421 50-109 (114)
78 TIGR02194 GlrX_NrdH Glutaredox 98.7 4.4E-08 9.4E-13 80.8 6.0 54 114-167 1-56 (72)
79 PF00462 Glutaredoxin: Glutare 98.7 3.8E-08 8.3E-13 78.1 5.3 54 114-167 1-57 (60)
80 cd03028 GRX_PICOT_like Glutare 98.6 1.1E-07 2.3E-12 82.2 7.7 68 112-183 8-83 (90)
81 PF14497 GST_C_3: Glutathione 98.6 9.2E-08 2E-12 83.0 6.8 66 349-418 34-99 (99)
82 cd03079 GST_N_Metaxin2 GST_N f 98.6 8.8E-08 1.9E-12 80.8 6.4 59 120-186 15-73 (74)
83 COG0695 GrxC Glutaredoxin and 98.6 4.8E-08 1E-12 83.1 4.9 34 548-581 1-34 (80)
84 PF00043 GST_C: Glutathione S- 98.6 1.1E-07 2.3E-12 80.9 6.4 66 351-420 29-95 (95)
85 cd03189 GST_C_GTT1_like GST_C 98.6 2.6E-07 5.6E-12 81.9 8.9 58 357-419 61-118 (119)
86 cd03186 GST_C_SspA GST_N famil 98.6 3.3E-07 7.1E-12 80.0 9.2 61 357-422 42-103 (107)
87 TIGR02196 GlrX_YruB Glutaredox 98.5 2.3E-07 4.9E-12 74.3 7.2 67 113-183 1-72 (74)
88 PRK10824 glutaredoxin-4; Provi 98.5 2E-07 4.3E-12 85.0 7.5 69 112-184 15-91 (115)
89 PRK10329 glutaredoxin-like pro 98.5 9E-08 1.9E-12 81.6 5.0 34 548-581 1-34 (81)
90 cd03419 GRX_GRXh_1_2_like Glut 98.5 3.3E-07 7.2E-12 76.1 8.0 69 113-185 1-75 (82)
91 cd03185 GST_C_Tau GST_C family 98.5 4.7E-07 1E-11 80.9 9.0 60 359-421 44-108 (126)
92 PF13410 GST_C_2: Glutathione 98.5 1.5E-07 3.3E-12 76.1 5.3 63 350-415 6-69 (69)
93 TIGR02190 GlrX-dom Glutaredoxi 98.5 1.5E-07 3.3E-12 79.2 5.4 37 546-582 6-42 (79)
94 PRK10638 glutaredoxin 3; Provi 98.5 1.6E-07 3.4E-12 79.6 5.0 36 547-582 1-36 (83)
95 cd03196 GST_C_5 GST_C family, 98.5 3.4E-07 7.3E-12 82.2 7.4 58 361-421 52-110 (115)
96 TIGR02189 GlrX-like_plant Glut 98.5 1.5E-07 3.2E-12 83.1 4.8 35 547-581 7-41 (99)
97 cd03182 GST_C_GTT2_like GST_C 98.5 7.2E-07 1.6E-11 78.6 8.9 61 355-420 54-115 (117)
98 PF00462 Glutaredoxin: Glutare 98.5 1.8E-07 3.9E-12 74.2 4.5 33 550-582 1-33 (60)
99 cd03029 GRX_hybridPRX5 Glutare 98.5 2.1E-07 4.5E-12 76.5 4.9 34 549-582 2-35 (72)
100 cd03179 GST_C_1 GST_C family, 98.4 7.5E-07 1.6E-11 76.7 8.0 54 359-417 52-105 (105)
101 TIGR02180 GRX_euk Glutaredoxin 98.4 7.5E-07 1.6E-11 74.1 7.6 68 114-185 1-76 (84)
102 cd03190 GST_C_ECM4_like GST_C 98.4 1.3E-06 2.8E-11 81.2 9.2 61 358-421 45-111 (142)
103 cd03177 GST_C_Delta_Epsilon GS 98.4 7.7E-07 1.7E-11 79.2 7.3 63 357-423 45-107 (118)
104 TIGR02200 GlrX_actino Glutared 98.4 1.1E-06 2.4E-11 71.7 7.5 63 113-178 1-67 (77)
105 cd03178 GST_C_Ure2p_like GST_C 98.4 1E-06 2.3E-11 77.1 7.8 59 359-421 49-107 (113)
106 PHA03050 glutaredoxin; Provisi 98.4 3.7E-07 8E-12 82.1 4.7 35 547-581 12-49 (108)
107 cd03183 GST_C_Theta GST_C fami 98.4 3.2E-06 7E-11 75.8 10.7 48 371-419 64-111 (126)
108 cd03191 GST_C_Zeta GST_C famil 98.4 2.8E-06 6E-11 75.7 10.0 60 359-421 53-112 (121)
109 cd03418 GRX_GRXb_1_3_like Glut 98.3 5.3E-07 1.2E-11 73.9 4.7 33 549-581 1-33 (75)
110 COG0435 ECM4 Predicted glutath 98.3 1E-05 2.3E-10 83.1 14.8 206 111-439 49-293 (324)
111 cd02976 NrdH NrdH-redoxin (Nrd 98.3 1.3E-06 2.7E-11 69.9 6.4 61 113-177 1-64 (73)
112 cd03027 GRX_DEP Glutaredoxin ( 98.3 6.8E-07 1.5E-11 73.7 4.7 33 549-581 2-34 (73)
113 TIGR02194 GlrX_NrdH Glutaredox 98.3 5.9E-07 1.3E-11 74.1 4.3 32 550-581 1-32 (72)
114 cd03078 GST_N_Metaxin1_like GS 98.3 3.5E-06 7.5E-11 70.5 7.9 58 120-186 14-71 (73)
115 cd00299 GST_C_family Glutathio 98.3 3.7E-06 8.1E-11 70.7 8.1 56 358-416 44-100 (100)
116 cd03181 GST_C_EFB1gamma GST_C 98.3 2.4E-06 5.1E-11 76.0 7.2 61 358-421 48-109 (123)
117 PRK12759 bifunctional gluaredo 98.3 3E-06 6.4E-11 92.5 9.3 66 113-182 3-79 (410)
118 KOG3027|consensus 98.2 2.4E-05 5.2E-10 77.5 14.5 66 111-185 15-89 (257)
119 TIGR02181 GRX_bact Glutaredoxi 98.2 1.3E-06 2.8E-11 72.8 4.4 32 550-581 1-32 (79)
120 PRK11200 grxA glutaredoxin 1; 98.2 1.6E-06 3.5E-11 73.7 4.9 35 548-582 1-40 (85)
121 cd03187 GST_C_Phi GST_C family 98.2 3.6E-06 7.7E-11 74.0 6.8 62 357-421 52-113 (118)
122 cd03211 GST_C_Metaxin2 GST_C f 98.2 1.1E-06 2.4E-11 80.6 3.6 61 357-417 60-126 (126)
123 cd03206 GST_C_7 GST_C family, 98.2 4.7E-06 1E-10 72.2 7.4 62 354-420 37-98 (100)
124 TIGR00365 monothiol glutaredox 98.2 1.9E-06 4.1E-11 75.9 4.7 35 547-581 11-50 (97)
125 cd03193 GST_C_Metaxin GST_C fa 98.2 3E-06 6.5E-11 71.8 5.7 58 357-417 26-88 (88)
126 cd03180 GST_C_2 GST_C family, 98.1 6.5E-06 1.4E-10 71.3 7.5 59 357-420 50-108 (110)
127 cd03207 GST_C_8 GST_C family, 98.1 5.6E-06 1.2E-10 71.7 7.0 61 355-421 35-95 (103)
128 cd03031 GRX_GRX_like Glutaredo 98.1 5.8E-06 1.3E-10 78.4 7.1 65 114-182 2-79 (147)
129 KOG1752|consensus 98.1 9.3E-06 2E-10 72.9 7.9 69 111-183 13-87 (104)
130 cd03184 GST_C_Omega GST_C fami 98.1 5.6E-06 1.2E-10 74.7 6.5 66 355-421 37-106 (124)
131 KOG2903|consensus 98.1 2.7E-05 5.9E-10 79.5 11.6 85 353-441 206-297 (319)
132 TIGR02183 GRXA Glutaredoxin, G 98.1 3.3E-06 7.2E-11 72.4 4.3 32 550-581 2-38 (86)
133 cd02066 GRX_family Glutaredoxi 98.1 4.9E-06 1.1E-10 66.0 4.9 33 549-581 1-33 (72)
134 cd03036 ArsC_like Arsenate Red 98.1 3E-06 6.5E-11 76.2 4.0 31 550-580 1-31 (111)
135 cd03204 GST_C_GDAP1 GST_C fami 98.1 1.1E-05 2.3E-10 73.2 7.5 48 373-420 59-109 (111)
136 cd03212 GST_C_Metaxin1_3 GST_C 98.1 6E-06 1.3E-10 77.0 6.1 64 357-420 67-136 (137)
137 cd03210 GST_C_Pi GST_C family, 98.1 1.1E-05 2.3E-10 73.2 7.4 63 357-420 42-104 (126)
138 cd03198 GST_C_CLIC GST_C famil 98.1 9.2E-06 2E-10 75.9 6.9 71 351-421 30-117 (134)
139 cd03209 GST_C_Mu GST_C family, 98.1 1.1E-05 2.4E-10 72.4 7.2 59 359-421 44-102 (121)
140 PTZ00062 glutaredoxin; Provisi 98.0 1.3E-05 2.7E-10 80.0 7.8 67 112-182 113-187 (204)
141 cd03040 GST_N_mPGES2 GST_N fam 98.0 6.3E-06 1.4E-10 68.1 4.7 35 549-583 1-35 (77)
142 cd02977 ArsC_family Arsenate R 98.0 5.1E-06 1.1E-10 73.5 3.9 31 550-580 1-31 (105)
143 cd03201 GST_C_DHAR GST_C famil 98.0 1.4E-05 3.1E-10 72.7 6.9 68 353-422 33-104 (121)
144 cd03028 GRX_PICOT_like Glutare 98.0 7.9E-06 1.7E-10 70.6 4.7 35 547-581 7-46 (90)
145 cd03419 GRX_GRXh_1_2_like Glut 98.0 1.1E-05 2.3E-10 67.0 4.9 34 549-582 1-34 (82)
146 cd03041 GST_N_2GST_N GST_N fam 97.9 1.2E-05 2.7E-10 67.0 4.4 33 550-582 2-34 (77)
147 cd03200 GST_C_JTV1 GST_C famil 97.9 2.7E-05 5.9E-10 68.1 6.5 44 371-419 53-96 (96)
148 TIGR02196 GlrX_YruB Glutaredox 97.9 1.6E-05 3.5E-10 63.5 4.7 34 549-582 1-34 (74)
149 TIGR02200 GlrX_actino Glutared 97.9 2.1E-05 4.6E-10 64.1 4.8 34 549-582 1-34 (77)
150 cd03192 GST_C_Sigma_like GST_C 97.8 3.5E-05 7.6E-10 66.7 5.7 44 372-416 60-104 (104)
151 cd03203 GST_C_Lambda GST_C fam 97.8 4.9E-05 1.1E-09 68.6 6.8 48 371-420 51-103 (120)
152 cd03208 GST_C_Alpha GST_C fami 97.8 5.9E-05 1.3E-09 70.0 7.5 50 371-421 59-108 (137)
153 TIGR02180 GRX_euk Glutaredoxin 97.8 2.2E-05 4.8E-10 65.2 4.1 33 550-582 1-35 (84)
154 cd03194 GST_C_3 GST_C family, 97.8 6.1E-05 1.3E-09 67.6 6.5 57 357-421 51-107 (114)
155 PRK10824 glutaredoxin-4; Provi 97.7 3.8E-05 8.3E-10 70.1 4.5 35 547-581 14-53 (115)
156 cd02976 NrdH NrdH-redoxin (Nrd 97.7 6E-05 1.3E-09 60.1 4.7 34 549-582 1-34 (73)
157 cd03060 GST_N_Omega_like GST_N 97.6 7.9E-05 1.7E-09 60.9 4.7 33 551-583 2-34 (71)
158 cd03059 GST_N_SspA GST_N famil 97.6 7.1E-05 1.5E-09 60.7 4.4 34 550-583 1-34 (73)
159 cd03195 GST_C_4 GST_C family, 97.5 0.0002 4.4E-09 64.0 6.8 47 371-422 61-107 (114)
160 KOG3028|consensus 97.5 0.0088 1.9E-07 62.9 19.4 214 120-422 15-237 (313)
161 cd03037 GST_N_GRX2 GST_N famil 97.5 9.5E-05 2.1E-09 60.2 3.8 33 551-583 2-34 (71)
162 cd03035 ArsC_Yffb Arsenate Red 97.5 0.0001 2.2E-09 66.0 4.4 31 550-580 1-31 (105)
163 cd00570 GST_N_family Glutathio 97.5 0.00013 2.8E-09 56.7 4.4 34 550-583 1-34 (71)
164 cd03205 GST_C_6 GST_C family, 97.5 0.0005 1.1E-08 59.4 8.5 58 353-416 40-98 (98)
165 KOG1752|consensus 97.5 0.00013 2.8E-09 65.5 4.4 37 547-583 13-49 (104)
166 cd03051 GST_N_GTT2_like GST_N 97.5 0.00014 3E-09 58.7 4.1 33 550-582 1-33 (74)
167 cd03033 ArsC_15kD Arsenate Red 97.5 0.00014 2.9E-09 66.1 4.4 32 549-580 1-32 (113)
168 cd03055 GST_N_Omega GST_N fami 97.4 0.0003 6.5E-09 60.4 5.9 35 548-582 17-51 (89)
169 cd03036 ArsC_like Arsenate Red 97.3 0.00025 5.5E-09 63.8 4.4 40 114-153 1-42 (111)
170 PRK01655 spxA transcriptional 97.2 0.00035 7.5E-09 64.9 4.7 40 113-152 1-42 (131)
171 cd02973 TRX_GRX_like Thioredox 97.2 0.00028 6E-09 56.7 3.3 33 549-581 2-39 (67)
172 cd02973 TRX_GRX_like Thioredox 97.2 0.00076 1.6E-08 54.1 5.7 53 113-167 2-60 (67)
173 cd03045 GST_N_Delta_Epsilon GS 97.2 0.00044 9.6E-09 56.3 4.2 33 550-582 1-33 (74)
174 cd02977 ArsC_family Arsenate R 97.2 0.00044 9.6E-09 61.1 4.6 32 114-145 1-32 (105)
175 COG0278 Glutaredoxin-related p 97.2 0.0012 2.6E-08 58.8 7.1 70 111-184 14-92 (105)
176 PTZ00062 glutaredoxin; Provisi 97.1 0.00048 1E-08 68.8 4.8 35 547-581 112-151 (204)
177 cd03032 ArsC_Spx Arsenate Redu 97.1 0.00062 1.4E-08 61.5 4.9 40 113-152 1-42 (115)
178 cd03056 GST_N_4 GST_N family, 97.1 0.00063 1.4E-08 54.9 3.9 33 550-582 1-33 (73)
179 PF13417 GST_N_3: Glutathione 97.0 0.00066 1.4E-08 56.1 3.9 33 552-584 1-33 (75)
180 cd03030 GRX_SH3BGR Glutaredoxi 97.0 0.0013 2.8E-08 57.8 5.6 65 114-182 2-79 (92)
181 PRK12559 transcriptional regul 97.0 0.001 2.2E-08 61.9 5.1 41 113-153 1-43 (131)
182 cd03058 GST_N_Tau GST_N family 97.0 0.001 2.2E-08 54.6 4.3 34 550-583 1-34 (74)
183 PRK13344 spxA transcriptional 96.9 0.0011 2.3E-08 61.8 4.9 41 113-153 1-43 (132)
184 cd03054 GST_N_Metaxin GST_N fa 96.9 0.0011 2.4E-08 54.2 4.2 32 551-582 2-40 (72)
185 TIGR01617 arsC_related transcr 96.9 0.0012 2.6E-08 59.8 4.3 39 114-152 1-41 (117)
186 cd03035 ArsC_Yffb Arsenate Red 96.7 0.002 4.3E-08 57.7 4.6 40 114-153 1-42 (105)
187 COG1393 ArsC Arsenate reductas 96.7 0.0024 5.1E-08 58.6 4.9 33 548-580 1-33 (117)
188 cd03033 ArsC_15kD Arsenate Red 96.7 0.0023 5E-08 58.1 4.7 41 113-153 1-43 (113)
189 TIGR00411 redox_disulf_1 small 96.5 0.013 2.8E-07 48.3 7.7 55 113-167 2-61 (82)
190 cd03049 GST_N_3 GST_N family, 96.4 0.0048 1E-07 50.3 4.3 34 550-583 1-36 (73)
191 TIGR00412 redox_disulf_2 small 96.3 0.011 2.5E-07 49.4 6.4 52 113-167 2-57 (76)
192 cd03080 GST_N_Metaxin_like GST 96.3 0.0058 1.3E-07 50.5 4.5 33 550-582 2-41 (75)
193 COG1393 ArsC Arsenate reductas 96.3 0.0065 1.4E-07 55.7 5.0 42 112-153 1-44 (117)
194 cd03053 GST_N_Phi GST_N family 96.2 0.0067 1.4E-07 49.6 4.5 33 550-582 2-34 (76)
195 cd03052 GST_N_GDAP1 GST_N fami 96.2 0.0057 1.2E-07 50.7 4.0 33 550-582 1-33 (73)
196 TIGR00412 redox_disulf_2 small 96.1 0.0086 1.9E-07 50.1 4.6 32 549-581 2-37 (76)
197 PRK10853 putative reductase; P 96.0 0.0086 1.9E-07 54.8 4.4 41 113-153 1-43 (118)
198 PRK10026 arsenate reductase; P 95.9 0.011 2.4E-07 55.9 5.1 42 112-153 2-45 (141)
199 TIGR01616 nitro_assoc nitrogen 95.8 0.013 2.8E-07 54.4 4.9 41 113-153 2-44 (126)
200 cd03061 GST_N_CLIC GST_N famil 95.8 0.012 2.6E-07 51.7 4.2 30 555-584 19-48 (91)
201 cd03038 GST_N_etherase_LigE GS 95.7 0.013 2.8E-07 49.3 4.1 27 556-582 14-40 (84)
202 cd03042 GST_N_Zeta GST_N famil 95.5 0.016 3.5E-07 46.7 3.9 33 550-582 1-33 (73)
203 TIGR00014 arsC arsenate reduct 95.5 0.019 4.2E-07 52.0 4.6 40 114-153 1-42 (114)
204 COG4545 Glutaredoxin-related p 95.4 0.038 8.1E-07 47.1 5.7 59 115-175 5-78 (85)
205 cd03034 ArsC_ArsC Arsenate Red 95.4 0.022 4.7E-07 51.4 4.5 40 114-153 1-42 (112)
206 cd03039 GST_N_Sigma_like GST_N 95.3 0.019 4.1E-07 46.7 3.7 33 550-582 1-33 (72)
207 PF13192 Thioredoxin_3: Thiore 95.3 0.043 9.4E-07 45.8 5.9 52 113-167 2-57 (76)
208 KOG0911|consensus 95.2 0.051 1.1E-06 55.0 6.8 70 111-184 138-215 (227)
209 cd03044 GST_N_EF1Bgamma GST_N 95.1 0.027 5.8E-07 46.4 4.0 33 551-583 2-34 (75)
210 cd03048 GST_N_Ure2p_like GST_N 95.0 0.031 6.6E-07 46.5 4.1 32 550-582 2-33 (81)
211 cd01659 TRX_superfamily Thiore 95.0 0.061 1.3E-06 39.4 5.4 54 114-167 1-61 (69)
212 PF10568 Tom37: Outer mitochon 95.0 0.076 1.7E-06 44.6 6.4 56 121-184 13-71 (72)
213 cd03050 GST_N_Theta GST_N fami 95.0 0.039 8.5E-07 45.3 4.6 33 550-582 1-33 (76)
214 PF05768 DUF836: Glutaredoxin- 94.5 0.064 1.4E-06 45.5 4.9 54 113-167 1-57 (81)
215 TIGR00411 redox_disulf_1 small 94.5 0.052 1.1E-06 44.6 4.3 32 549-580 2-39 (82)
216 PHA02125 thioredoxin-like prot 94.5 0.05 1.1E-06 45.2 4.1 30 550-581 2-31 (75)
217 PF05768 DUF836: Glutaredoxin- 94.4 0.053 1.1E-06 45.9 4.2 33 549-581 1-37 (81)
218 PHA02125 thioredoxin-like prot 94.2 0.071 1.5E-06 44.2 4.5 50 113-164 1-51 (75)
219 COG4545 Glutaredoxin-related p 94.0 0.056 1.2E-06 46.1 3.3 30 551-580 5-34 (85)
220 cd03026 AhpF_NTD_C TRX-GRX-lik 93.9 0.054 1.2E-06 47.0 3.3 33 549-581 15-52 (89)
221 cd03076 GST_N_Pi GST_N family, 93.9 0.074 1.6E-06 43.7 4.0 33 550-582 2-34 (73)
222 cd03026 AhpF_NTD_C TRX-GRX-lik 93.9 0.13 2.8E-06 44.6 5.7 57 110-167 12-73 (89)
223 cd01659 TRX_superfamily Thiore 92.9 0.14 3.1E-06 37.4 3.7 33 550-582 1-38 (69)
224 cd03047 GST_N_2 GST_N family, 92.8 0.14 3.1E-06 41.7 3.9 33 550-582 1-33 (73)
225 cd03030 GRX_SH3BGR Glutaredoxi 92.1 0.075 1.6E-06 46.7 1.5 25 560-584 18-44 (92)
226 PF13409 GST_N_2: Glutathione 92.1 0.13 2.9E-06 42.0 2.9 24 557-580 1-24 (70)
227 cd03057 GST_N_Beta GST_N famil 91.5 0.24 5.2E-06 40.6 3.8 32 550-582 1-32 (77)
228 PF03960 ArsC: ArsC family; I 91.3 0.22 4.8E-06 44.5 3.7 29 117-145 1-29 (110)
229 cd03199 GST_C_GRX2 GST_C famil 91.2 1.8 3.8E-05 40.6 9.6 42 376-420 82-123 (128)
230 PF04399 Glutaredoxin2_C: Glut 91.0 1.1 2.3E-05 42.3 8.0 43 374-420 79-122 (132)
231 TIGR01295 PedC_BrcD bacterioci 90.6 0.43 9.2E-06 43.7 4.9 34 548-581 25-62 (122)
232 PF04908 SH3BGR: SH3-binding, 90.5 0.78 1.7E-05 41.1 6.3 67 112-182 1-85 (99)
233 cd02975 PfPDO_like_N Pyrococcu 90.2 0.25 5.4E-06 44.4 3.0 33 549-581 24-62 (113)
234 PLN02817 glutathione dehydroge 89.7 0.34 7.4E-06 50.2 3.9 31 553-583 68-98 (265)
235 cd03046 GST_N_GTT1_like GST_N 88.4 0.58 1.3E-05 37.9 3.7 31 551-582 2-32 (76)
236 cd02947 TRX_family TRX family; 87.8 0.87 1.9E-05 36.7 4.4 36 547-582 11-51 (93)
237 cd02949 TRX_NTR TRX domain, no 87.3 0.9 2E-05 39.0 4.4 34 548-581 15-54 (97)
238 PRK11752 putative S-transferas 87.2 0.96 2.1E-05 46.5 5.3 61 521-582 14-82 (264)
239 cd03043 GST_N_1 GST_N family, 87.0 0.94 2E-05 37.2 4.1 28 555-582 7-34 (73)
240 cd02975 PfPDO_like_N Pyrococcu 86.4 2 4.4E-05 38.4 6.4 52 113-166 24-82 (113)
241 PF13098 Thioredoxin_2: Thiore 85.1 0.86 1.9E-05 39.7 3.2 24 547-570 6-29 (112)
242 cd03077 GST_N_Alpha GST_N fami 84.5 1.3 2.8E-05 37.0 3.9 32 550-581 2-33 (79)
243 PRK10877 protein disulfide iso 83.5 1.5 3.2E-05 44.7 4.5 33 546-578 107-142 (232)
244 TIGR02187 GlrX_arch Glutaredox 83.3 1 2.3E-05 44.7 3.3 32 549-580 136-172 (215)
245 TIGR02187 GlrX_arch Glutaredox 83.3 3.5 7.5E-05 41.0 7.0 56 110-167 133-194 (215)
246 PRK11657 dsbG disulfide isomer 82.8 1.7 3.7E-05 44.7 4.7 35 546-580 117-155 (251)
247 TIGR03140 AhpF alkyl hydropero 82.1 1.7 3.6E-05 49.0 4.7 56 110-167 117-178 (515)
248 PF13192 Thioredoxin_3: Thiore 82.0 1.6 3.4E-05 36.4 3.4 31 549-580 2-36 (76)
249 PRK15317 alkyl hydroperoxide r 81.1 2 4.3E-05 48.4 4.8 56 110-167 116-177 (517)
250 cd03020 DsbA_DsbC_DsbG DsbA fa 80.9 2 4.3E-05 42.0 4.2 35 546-580 77-113 (197)
251 cd02947 TRX_family TRX family; 79.9 5.5 0.00012 32.0 5.9 55 111-166 11-70 (93)
252 PF14834 GST_C_4: Glutathione 79.7 2.3 5E-05 39.2 3.9 27 371-398 62-88 (117)
253 KOG2824|consensus 77.8 3 6.4E-05 43.8 4.4 71 106-182 127-210 (281)
254 COG0278 Glutaredoxin-related p 76.6 1.6 3.5E-05 39.4 1.8 40 547-586 14-61 (105)
255 PF11287 DUF3088: Protein of u 75.9 6.4 0.00014 36.1 5.5 65 122-186 24-105 (112)
256 TIGR03143 AhpF_homolog putativ 75.3 5.4 0.00012 45.4 6.2 56 110-167 476-537 (555)
257 PRK13728 conjugal transfer pro 75.1 4.3 9.2E-05 40.2 4.6 32 550-581 73-108 (181)
258 cd02953 DsbDgamma DsbD gamma f 74.2 3.4 7.5E-05 35.6 3.3 20 548-567 13-32 (104)
259 cd02961 PDI_a_family Protein D 74.1 2.7 5.9E-05 34.7 2.6 23 548-570 17-39 (101)
260 TIGR01126 pdi_dom protein disu 73.4 2.7 5.9E-05 35.3 2.5 24 547-570 14-37 (102)
261 TIGR01295 PedC_BrcD bacterioci 72.4 14 0.0003 33.8 7.0 33 113-145 26-62 (122)
262 PF02798 GST_N: Glutathione S- 71.1 6.4 0.00014 32.6 4.1 32 549-582 2-33 (76)
263 cd02949 TRX_NTR TRX domain, no 69.8 13 0.00028 31.8 5.9 53 113-165 16-73 (97)
264 cd02995 PDI_a_PDI_a'_C PDIa fa 69.5 5.2 0.00011 33.8 3.4 39 523-570 4-42 (104)
265 cd02951 SoxW SoxW family; SoxW 69.3 27 0.00058 31.2 8.1 19 112-130 16-34 (125)
266 cd02959 ERp19 Endoplasmic reti 69.1 8 0.00017 35.0 4.6 34 548-581 21-60 (117)
267 cd02963 TRX_DnaJ TRX domain, D 68.5 12 0.00026 33.2 5.5 55 109-165 23-85 (111)
268 cd02984 TRX_PICOT TRX domain, 68.1 14 0.00031 31.0 5.8 55 112-166 16-75 (97)
269 PRK09381 trxA thioredoxin; Pro 66.0 43 0.00093 29.0 8.5 54 113-166 24-82 (109)
270 cd02953 DsbDgamma DsbD gamma f 65.4 14 0.00029 31.9 5.2 53 112-165 13-78 (104)
271 PF14595 Thioredoxin_9: Thiore 65.4 9.2 0.0002 35.5 4.3 60 111-170 42-108 (129)
272 cd02994 PDI_a_TMX PDIa family, 65.3 26 0.00057 29.8 6.9 54 113-166 19-78 (101)
273 PTZ00051 thioredoxin; Provisio 64.3 11 0.00024 31.8 4.4 34 548-581 20-58 (98)
274 PRK09381 trxA thioredoxin; Pro 64.2 11 0.00025 32.6 4.5 35 547-581 22-62 (109)
275 PRK11657 dsbG disulfide isomer 64.0 10 0.00022 39.0 4.8 34 98-133 107-140 (251)
276 cd02951 SoxW SoxW family; SoxW 63.9 6.2 0.00013 35.3 2.8 22 547-568 15-36 (125)
277 PF04908 SH3BGR: SH3-binding, 63.3 3 6.5E-05 37.4 0.6 31 550-580 3-39 (99)
278 cd02972 DsbA_family DsbA famil 62.4 7.4 0.00016 31.8 2.8 31 550-580 1-37 (98)
279 PHA02278 thioredoxin-like prot 62.0 14 0.0003 32.9 4.7 36 547-582 15-56 (103)
280 cd03020 DsbA_DsbC_DsbG DsbA fa 60.9 12 0.00025 36.6 4.4 33 100-134 69-101 (197)
281 TIGR03143 AhpF_homolog putativ 60.4 8.7 0.00019 43.8 3.9 32 549-580 479-515 (555)
282 PTZ00051 thioredoxin; Provisio 60.3 35 0.00076 28.7 6.7 56 112-170 20-81 (98)
283 cd03078 GST_N_Metaxin1_like GS 60.1 13 0.00027 31.0 3.8 25 556-580 14-38 (73)
284 PF00085 Thioredoxin: Thioredo 60.0 68 0.0015 26.7 8.4 55 111-165 18-77 (103)
285 cd02993 PDI_a_APS_reductase PD 59.7 14 0.00029 32.5 4.2 36 547-582 22-64 (109)
286 cd02989 Phd_like_TxnDC9 Phosdu 59.0 14 0.00031 33.0 4.3 35 547-581 23-62 (113)
287 PF13098 Thioredoxin_2: Thiore 58.9 9.7 0.00021 33.0 3.1 23 111-133 6-28 (112)
288 cd03079 GST_N_Metaxin2 GST_N f 58.5 11 0.00024 31.9 3.2 25 556-580 15-39 (74)
289 cd03002 PDI_a_MPD1_like PDI fa 58.5 7.8 0.00017 33.3 2.4 24 547-570 19-42 (109)
290 cd03075 GST_N_Mu GST_N family, 57.8 13 0.00027 31.4 3.5 31 552-582 3-33 (82)
291 TIGR00385 dsbE periplasmic pro 57.7 58 0.0012 31.1 8.5 20 113-132 66-85 (173)
292 PHA03075 glutaredoxin-like pro 57.5 19 0.00041 33.4 4.7 51 111-166 2-53 (123)
293 cd02948 TRX_NDPK TRX domain, T 57.4 32 0.00069 29.8 6.1 58 112-170 19-81 (102)
294 PF00085 Thioredoxin: Thioredo 56.2 13 0.00028 31.2 3.3 35 547-581 18-58 (103)
295 cd02993 PDI_a_APS_reductase PD 55.7 27 0.0006 30.6 5.5 54 111-164 22-83 (109)
296 cd02954 DIM1 Dim1 family; Dim1 55.4 19 0.00042 33.0 4.5 35 547-581 15-55 (114)
297 PRK10877 protein disulfide iso 54.4 19 0.0004 36.7 4.7 34 100-135 99-132 (232)
298 PRK10996 thioredoxin 2; Provis 54.2 93 0.002 28.8 9.0 59 111-170 53-116 (139)
299 PF13899 Thioredoxin_7: Thiore 53.3 11 0.00025 31.4 2.5 20 549-568 20-39 (82)
300 cd02959 ERp19 Endoplasmic reti 52.9 49 0.0011 29.9 6.7 54 112-165 21-82 (117)
301 TIGR03140 AhpF alkyl hydropero 52.6 9.9 0.00021 42.9 2.6 33 548-580 119-156 (515)
302 PRK15317 alkyl hydroperoxide r 52.5 10 0.00022 42.7 2.8 33 548-580 118-155 (517)
303 KOG1147|consensus 52.2 8.8 0.00019 43.9 2.1 44 371-414 106-150 (712)
304 cd02950 TxlA TRX-like protein 52.1 88 0.0019 29.2 8.5 78 113-190 23-112 (142)
305 cd02963 TRX_DnaJ TRX domain, D 51.6 24 0.00053 31.2 4.5 36 546-581 24-66 (111)
306 cd02998 PDI_a_ERp38 PDIa famil 51.1 17 0.00036 30.7 3.2 23 548-570 20-42 (105)
307 PF00578 AhpC-TSA: AhpC/TSA fa 50.9 23 0.00049 31.0 4.1 32 550-581 30-68 (124)
308 TIGR01068 thioredoxin thioredo 50.9 25 0.00054 29.2 4.2 35 547-581 15-55 (101)
309 cd02985 TRX_CDSP32 TRX family, 50.7 26 0.00057 30.5 4.5 36 547-582 16-56 (103)
310 cd03000 PDI_a_TMX3 PDIa family 50.4 13 0.00028 32.1 2.5 23 547-569 16-38 (104)
311 cd02956 ybbN ybbN protein fami 50.1 58 0.0012 27.3 6.4 53 113-165 15-72 (96)
312 cd02997 PDI_a_PDIR PDIa family 50.0 14 0.0003 31.2 2.6 20 548-567 19-38 (104)
313 cd03003 PDI_a_ERdj5_N PDIa fam 49.9 48 0.001 28.3 5.9 54 112-165 20-78 (101)
314 cd02984 TRX_PICOT TRX domain, 48.9 18 0.00039 30.3 3.1 23 548-570 16-38 (97)
315 cd03000 PDI_a_TMX3 PDIa family 48.7 50 0.0011 28.4 5.9 54 112-165 17-78 (104)
316 cd02950 TxlA TRX-like protein 47.6 28 0.00061 32.5 4.4 35 548-582 22-62 (142)
317 KOG4244|consensus 47.0 13 0.00029 38.9 2.3 32 549-580 45-83 (281)
318 PF13728 TraF: F plasmid trans 46.8 39 0.00084 34.1 5.6 53 113-165 123-189 (215)
319 cd02961 PDI_a_family Protein D 46.1 64 0.0014 26.3 6.0 54 112-165 17-77 (101)
320 cd02989 Phd_like_TxnDC9 Phosdu 45.8 40 0.00086 30.2 4.9 53 111-165 23-81 (113)
321 cd02957 Phd_like Phosducin (Ph 45.4 31 0.00068 30.5 4.2 35 547-581 25-64 (113)
322 COG2143 Thioredoxin-related pr 45.2 21 0.00046 34.9 3.2 20 549-568 45-64 (182)
323 cd03004 PDI_a_ERdj5_C PDIa fam 45.1 41 0.00088 28.8 4.8 54 112-165 21-79 (104)
324 cd02992 PDI_a_QSOX PDIa family 45.0 19 0.00042 32.1 2.8 39 523-570 5-43 (114)
325 cd02999 PDI_a_ERp44_like PDIa 45.0 22 0.00047 31.0 3.0 33 548-580 20-57 (100)
326 cd03003 PDI_a_ERdj5_N PDIa fam 44.5 23 0.00049 30.3 3.1 34 548-581 20-59 (101)
327 KOG0911|consensus 44.3 12 0.00025 38.4 1.4 32 555-586 151-184 (227)
328 cd02996 PDI_a_ERp44 PDIa famil 43.9 23 0.00049 30.8 3.0 21 549-569 21-41 (108)
329 TIGR02738 TrbB type-F conjugat 43.9 45 0.00098 31.9 5.3 35 547-581 51-89 (153)
330 TIGR01126 pdi_dom protein disu 43.5 30 0.00064 28.9 3.6 55 110-164 13-74 (102)
331 cd02999 PDI_a_ERp44_like PDIa 43.4 67 0.0015 27.9 5.9 51 113-165 21-78 (100)
332 PF06053 DUF929: Domain of unk 42.4 20 0.00042 37.4 2.7 63 80-166 45-112 (249)
333 KOG2824|consensus 42.4 32 0.00069 36.3 4.2 36 547-582 130-171 (281)
334 cd02952 TRP14_like Human TRX-r 42.4 39 0.00084 31.1 4.4 34 548-581 23-69 (119)
335 cd02994 PDI_a_TMX PDIa family, 42.3 26 0.00056 29.8 3.1 32 549-580 19-57 (101)
336 cd02955 SSP411 TRX domain, SSP 42.2 63 0.0014 29.8 5.8 63 114-177 19-97 (124)
337 cd03023 DsbA_Com1_like DsbA fa 41.3 30 0.00064 31.2 3.5 24 110-133 5-28 (154)
338 cd02948 TRX_NDPK TRX domain, T 40.8 32 0.0007 29.8 3.5 35 547-581 18-59 (102)
339 cd02970 PRX_like2 Peroxiredoxi 40.6 42 0.0009 30.2 4.3 31 550-580 28-65 (149)
340 cd03004 PDI_a_ERdj5_C PDIa fam 40.1 34 0.00075 29.2 3.5 34 548-581 21-60 (104)
341 PHA02278 thioredoxin-like prot 40.1 89 0.0019 27.7 6.2 55 111-165 15-78 (103)
342 COG3019 Predicted metal-bindin 40.0 43 0.00094 32.1 4.3 45 538-582 16-60 (149)
343 PF13728 TraF: F plasmid trans 39.7 35 0.00077 34.4 4.0 33 549-581 123-159 (215)
344 cd02995 PDI_a_PDI_a'_C PDIa fa 39.2 85 0.0018 26.3 5.8 53 112-165 20-79 (104)
345 TIGR01068 thioredoxin thioredo 39.1 99 0.0022 25.5 6.1 54 112-165 16-74 (101)
346 cd02985 TRX_CDSP32 TRX family, 38.9 1.1E+02 0.0025 26.4 6.7 58 112-170 17-81 (103)
347 cd02960 AGR Anterior Gradient 38.8 24 0.00052 33.2 2.4 18 550-567 27-44 (130)
348 cd02954 DIM1 Dim1 family; Dim1 37.9 62 0.0013 29.7 5.0 53 113-165 17-74 (114)
349 COG0526 TrxA Thiol-disulfide i 37.7 26 0.00056 28.4 2.3 27 554-580 40-72 (127)
350 cd02956 ybbN ybbN protein fami 36.4 45 0.00097 28.0 3.6 24 547-570 13-36 (96)
351 cd02957 Phd_like Phosducin (Ph 36.3 68 0.0015 28.3 4.9 51 112-165 26-82 (113)
352 COG3019 Predicted metal-bindin 36.2 1.4E+02 0.003 28.8 7.0 80 103-186 17-102 (149)
353 cd02997 PDI_a_PDIR PDIa family 36.1 1.2E+02 0.0026 25.4 6.2 56 112-167 19-83 (104)
354 TIGR02740 TraF-like TraF-like 35.8 43 0.00094 34.9 4.1 33 549-581 169-205 (271)
355 cd03001 PDI_a_P5 PDIa family, 35.8 37 0.00081 28.6 3.0 32 549-580 21-58 (103)
356 cd02996 PDI_a_ERp44 PDIa famil 35.6 69 0.0015 27.7 4.8 21 113-133 21-41 (108)
357 cd03002 PDI_a_MPD1_like PDI fa 35.6 85 0.0019 26.8 5.3 53 113-165 21-80 (109)
358 cd03001 PDI_a_P5 PDIa family, 35.6 1.2E+02 0.0026 25.4 6.2 53 113-165 21-78 (103)
359 cd02998 PDI_a_ERp38 PDIa famil 35.3 1E+02 0.0022 25.8 5.6 54 112-165 20-81 (105)
360 cd02966 TlpA_like_family TlpA- 34.5 58 0.0013 26.9 4.0 35 548-582 21-62 (116)
361 PF08534 Redoxin: Redoxin; In 34.4 42 0.00091 30.5 3.3 32 550-581 33-71 (146)
362 cd03005 PDI_a_ERp46 PDIa famil 34.3 35 0.00076 28.7 2.6 20 549-568 19-38 (102)
363 cd02952 TRP14_like Human TRX-r 33.4 1E+02 0.0023 28.3 5.7 54 113-166 24-97 (119)
364 cd03006 PDI_a_EFP1_N PDIa fami 33.1 44 0.00096 30.2 3.2 35 547-581 30-70 (113)
365 cd02972 DsbA_family DsbA famil 32.6 49 0.0011 26.8 3.2 22 114-135 1-22 (98)
366 cd03005 PDI_a_ERp46 PDIa famil 32.5 1.1E+02 0.0024 25.6 5.5 53 113-165 19-79 (102)
367 KOG0907|consensus 32.1 50 0.0011 29.7 3.3 32 550-581 25-61 (106)
368 PRK13728 conjugal transfer pro 31.9 72 0.0016 31.7 4.7 32 114-145 73-108 (181)
369 cd02962 TMX2 TMX2 family; comp 31.8 56 0.0012 31.3 3.8 34 548-581 49-89 (152)
370 cd03017 PRX_BCP Peroxiredoxin 31.4 63 0.0014 28.9 3.9 31 550-580 28-65 (140)
371 PF09413 DUF2007: Domain of un 31.2 38 0.00083 27.2 2.2 31 550-580 1-31 (67)
372 cd03018 PRX_AhpE_like Peroxire 30.9 67 0.0014 29.1 4.1 32 550-581 33-71 (149)
373 PF11801 Tom37_C: Tom37 C-term 30.6 69 0.0015 31.2 4.2 24 373-396 131-155 (168)
374 PF13462 Thioredoxin_4: Thiore 30.2 53 0.0012 30.0 3.3 22 111-132 13-34 (162)
375 PTZ00102 disulphide isomerase; 29.9 51 0.0011 36.2 3.6 39 523-570 361-399 (477)
376 PF01323 DSBA: DSBA-like thior 29.7 84 0.0018 29.7 4.7 34 113-146 1-39 (193)
377 PF06110 DUF953: Eukaryotic pr 29.2 38 0.00081 31.4 2.1 26 555-580 35-66 (119)
378 cd03019 DsbA_DsbA DsbA family, 29.1 74 0.0016 29.7 4.1 25 109-133 14-38 (178)
379 cd02967 mauD Methylamine utili 28.6 47 0.001 28.7 2.5 23 548-570 23-45 (114)
380 cd02955 SSP411 TRX domain, SSP 28.6 46 0.00099 30.8 2.5 17 550-566 19-35 (124)
381 PRK13703 conjugal pilus assemb 27.5 75 0.0016 33.1 4.1 33 549-581 146-182 (248)
382 cd02987 Phd_like_Phd Phosducin 27.1 1.2E+02 0.0026 29.5 5.2 53 112-165 85-141 (175)
383 COG5494 Predicted thioredoxin/ 27.0 1.1E+02 0.0024 31.4 5.0 71 111-184 10-84 (265)
384 COG3011 Predicted thiol-disulf 26.9 2.9E+02 0.0064 26.4 7.6 73 109-185 6-84 (137)
385 cd02971 PRX_family Peroxiredox 26.8 77 0.0017 28.3 3.6 29 553-581 30-65 (140)
386 TIGR02739 TraF type-F conjugat 26.5 79 0.0017 33.0 4.1 33 549-581 153-189 (256)
387 TIGR01130 ER_PDI_fam protein d 26.4 62 0.0014 34.9 3.5 40 522-570 349-388 (462)
388 PRK13703 conjugal pilus assemb 26.1 1.4E+02 0.003 31.2 5.7 53 113-165 146-212 (248)
389 PHA03075 glutaredoxin-like pro 25.3 98 0.0021 28.9 3.9 34 549-582 4-37 (123)
390 TIGR02740 TraF-like TraF-like 25.3 1.9E+02 0.0041 30.2 6.6 54 113-166 169-236 (271)
391 PRK15116 sulfur acceptor prote 24.7 79 0.0017 33.2 3.7 24 551-574 168-192 (268)
392 TIGR02739 TraF type-F conjugat 24.5 1.4E+02 0.0029 31.3 5.3 53 113-165 153-219 (256)
393 cd02962 TMX2 TMX2 family; comp 24.5 1.7E+02 0.0038 27.9 5.7 21 113-133 50-70 (152)
394 PF04134 DUF393: Protein of un 24.2 2.3E+02 0.005 24.8 6.1 65 117-184 2-74 (114)
395 cd00755 YgdL_like Family of ac 24.0 81 0.0017 32.3 3.6 25 551-575 149-173 (231)
396 PF06110 DUF953: Eukaryotic pr 23.4 1.6E+02 0.0034 27.3 5.0 59 120-180 36-108 (119)
397 cd03008 TryX_like_RdCVF Trypar 23.4 3.5E+02 0.0075 25.8 7.5 69 114-182 29-135 (146)
398 cd02960 AGR Anterior Gradient 23.1 2.3E+02 0.0049 26.7 6.1 57 113-170 26-90 (130)
399 KOG3425|consensus 23.0 52 0.0011 30.9 1.7 16 555-570 42-57 (128)
400 PRK10954 periplasmic protein d 22.7 88 0.0019 30.9 3.5 33 548-580 39-80 (207)
401 TIGR01689 EcbF-BcbF capsule bi 22.5 87 0.0019 29.2 3.2 34 547-580 40-85 (126)
402 PRK10996 thioredoxin 2; Provis 22.4 88 0.0019 29.0 3.2 24 547-570 53-76 (139)
403 PTZ00443 Thioredoxin domain-co 22.4 5.7E+02 0.012 26.1 9.3 75 112-188 54-139 (224)
404 TIGR00385 dsbE periplasmic pro 22.4 1.3E+02 0.0028 28.6 4.5 32 548-579 65-99 (173)
405 cd03015 PRX_Typ2cys Peroxiredo 22.2 1E+02 0.0022 29.3 3.7 33 550-582 34-73 (173)
406 KOG4352|consensus 21.9 82 0.0018 30.6 2.9 58 472-530 69-126 (187)
407 cd03009 TryX_like_TryX_NRX Try 21.4 1.2E+02 0.0027 26.9 3.9 21 549-569 21-41 (131)
408 PLN02309 5'-adenylylsulfate re 21.3 1.2E+02 0.0025 34.4 4.4 35 547-581 366-407 (457)
409 cd02987 Phd_like_Phd Phosducin 21.0 1.2E+02 0.0025 29.6 3.9 33 549-581 86-123 (175)
410 cd03006 PDI_a_EFP1_N PDIa fami 21.0 1.1E+02 0.0025 27.5 3.6 25 111-135 30-54 (113)
411 cd03010 TlpA_like_DsbE TlpA-li 20.9 98 0.0021 27.4 3.1 23 548-570 27-49 (127)
412 PTZ00443 Thioredoxin domain-co 20.9 1.2E+02 0.0025 31.0 4.0 24 547-570 53-76 (224)
No 1
>KOG3029|consensus
Probab=100.00 E-value=2.5e-63 Score=496.71 Aligned_cols=322 Identities=52% Similarity=0.920 Sum_probs=290.4
Q ss_pred eeccCCceeeecccceeee--eeeeeeecccCCccccccccc-cccccccCccccccchhhcccccccchhhccccCCCC
Q psy2688 32 ASFFGNPIVIGLGLGVGSA--LGYAYYTNVSLEPVFNEMANT-QPVLESFPEGIKVSRKVCTKLLLCTLENMFQVVVPED 108 (586)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vs~~~c~~~~~~~~~~m~~~~~p~~ 108 (586)
+.+-|.|.+..+|+..|.+ .+|..|..+.+.. +.+|+++ ..-|+..
T Consensus 39 r~~~G~~kl~~~~a~~~~~ag~~~~~~ar~~~~~-~~lhae~~~~~ld~s------------------------------ 87 (370)
T KOG3029|consen 39 RKKNGTPKLAVLGATAGGAAGSVYTMYARVTDGS-QKLHAETKATRLDGS------------------------------ 87 (370)
T ss_pred cccCCCcchhhhhhhhccccceeEeeHHHhhcch-HHHHHHHHHhhcCCC------------------------------
Confidence 3457999999999988887 4555555555433 5666655 3333322
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhh
Q psy2688 109 TTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYL 188 (586)
Q Consensus 109 ~~~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyL 188 (586)
+.+++||+|.+||||+|||++|+++||+|+.|+|++..++++++|.+++||+|.++| +.+.||++||..|+.||
T Consensus 88 --~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~G----eqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 88 --PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRG----EQMVDSSVIISLLATYL 161 (370)
T ss_pred --CceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEecc----ceechhHHHHHHHHHHh
Confidence 357999999999999999999999999999999999999999999999999999875 56999999999999999
Q ss_pred ccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHHh
Q psy2688 189 SDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEAL 268 (586)
Q Consensus 189 ee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~eal 268 (586)
.+..++++++.++||..+.+.+++++..++.||||+|+.+.-|+---..+.+++.|++|+|+||+|+|+|++||++.|++
T Consensus 162 q~~~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~Esl 241 (370)
T KOG3029|consen 162 QDKRQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESL 241 (370)
T ss_pred ccCCCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHH
Confidence 99999999999999999999999999999999999999987664333346689999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccch
Q psy2688 269 QSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLK 348 (586)
Q Consensus 269 ~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~ 348 (586)
++|+||++ .|+|+.+||+|||.+++|+||.+||+++|+||++|+|+
T Consensus 242 etFewf~q----------------------------------~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~ 287 (370)
T KOG3029|consen 242 ETFEWFSQ----------------------------------AGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNIS 287 (370)
T ss_pred HHHHHHHH----------------------------------cCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence 99999988 79999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhhcccchh
Q psy2688 349 EEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVTNHLGNE 427 (586)
Q Consensus 349 ~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~~~~G~~ 427 (586)
+ +|++||+++++|.++|++ ++|||+|++|++||+++||+|+++++|.+|+|+++++.|+.||.||++++..++|+.
T Consensus 288 D-~Re~lydA~d~Wvaalgk--nr~flGG~kPnLaDLsvfGvl~sm~gc~afkd~~q~t~I~eW~~rmealV~e~~g~~ 363 (370)
T KOG3029|consen 288 D-EREHLYDAADQWVAALGK--NRPFLGGKKPNLADLSVFGVLRSMEGCQAFKDCLQNTSIGEWYYRMEALVEENRGQL 363 (370)
T ss_pred h-HHHHHHHHHHHHHHHhCC--CCCccCCCCCchhhhhhhhhhhHhhhhhHHHHHHhcchHHHHHHHHHHHHhccccch
Confidence 7 999999999999999985 899999999999999999999999999999999999999999999999999999973
No 2
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.96 E-value=4.1e-29 Score=234.66 Aligned_cols=144 Identities=56% Similarity=0.958 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHhhchhccccccccchHHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchh
Q psy2688 238 IMDERKWRKWADQVLVHTLSPNVYRTKEEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKH 317 (586)
Q Consensus 238 ~~e~~~W~~waD~~L~~~i~p~vyr~~~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~ 317 (586)
..++.+|++|+|++|+|+++|++||++.|++++|+|+.. .| .
T Consensus 5 ~~~e~kWr~W~d~~lv~~~~pniyrt~~ea~~~f~yi~~----------------------------------~~----~ 46 (149)
T cd03197 5 DPEEMKWRKWADDHLVHLISPNIYRTWSEALASFDYITP----------------------------------SG----Y 46 (149)
T ss_pred hHHHHHHHHHHHhhhHhhccHHHhCCHHHHHHhhhhHhc----------------------------------CC----C
Confidence 467899999999999999999999999999999999876 23 3
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhc
Q psy2688 318 FSKWERLLMVYVGAYAMYYISKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGC 397 (586)
Q Consensus 318 ~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~ 397 (586)
++.++|.+++++||.+||+++++++++|++.+++|++||+++++|++++.+ +++|++|++||+|||+++++|++++.+
T Consensus 47 f~~~er~~~~~~Ga~aM~~isk~lkk~~~i~~D~r~~L~~a~~~w~~~~~~--~~~FlaGd~ptIADisvyg~l~s~e~~ 124 (149)
T cd03197 47 FGYWEKFFAKYVGAAAMYLISKYLKKPRLLQDDVREWLYDALNTWVAALGK--DRQFHGGSKPNLADLAVYGVLRSVEGH 124 (149)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHhcC--CCCccCCCCCCHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999889999999999999999874 679999999999999999999999999
Q ss_pred cccccCCCCCCHHHHHHHHhhhhh
Q psy2688 398 EAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 398 ~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
..+.++.++|+|.+|++||+++++
T Consensus 125 ~~~~Dl~~~p~I~~W~eRm~~~v~ 148 (149)
T cd03197 125 PAFKDMVEETKIGEWYERMDAAVQ 148 (149)
T ss_pred ccccchhhCcCHHHHHHHHHHHhc
Confidence 777688899999999999999875
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.90 E-value=3e-22 Score=196.22 Aligned_cols=184 Identities=21% Similarity=0.245 Sum_probs=127.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hh-hccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhhc
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQ-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYLS 189 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyLe 189 (586)
.+++||+++.||+|++++++|.++|++||.+.++.... ++ +++||.|+||+|+++| ..|+||.||++||+
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g----~~l~ES~AIl~YL~---- 80 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRE----LTLYESRIIMEYLD---- 80 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECC----EEeeCHHHHHHHHH----
Confidence 36899999999999999999999999999999986443 33 3479999999999653 99999999999775
Q ss_pred cccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHHhh
Q psy2688 190 DTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEALQ 269 (586)
Q Consensus 190 e~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~eal~ 269 (586)
++ ||..++.|.++. +++++++|..|.+..+.....
T Consensus 81 ~~----------~~~~~l~p~~~~-----------------------~ra~~~~~~~~~~~~~~~~~~------------ 115 (211)
T PRK09481 81 ER----------FPHPPLMPVYPV-----------------------ARGESRLMMHRIEKDWYSLMN------------ 115 (211)
T ss_pred Hh----------CCCCCCCCCCHH-----------------------HHHHHHHHHHHHHHHHHHHHH------------
Confidence 44 666556665543 345678888876543221100
Q ss_pred hhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccchH
Q psy2688 270 SFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLKE 349 (586)
Q Consensus 270 ~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~ 349 (586)
. +.. + .+. . .+
T Consensus 116 ---~------------------------------~~~-----~-----~~~---~-----------------------~~ 126 (211)
T PRK09481 116 ---K------------------------------IVN-----G-----SAS---E-----------------------AD 126 (211)
T ss_pred ---H------------------------------Hhc-----C-----CHH---H-----------------------HH
Confidence 0 000 0 000 0 01
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccC--CCCCCHHHHHHHHhhhhhc
Q psy2688 350 EVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDL--MAKSKIKPWYERMRTNVTN 422 (586)
Q Consensus 350 ~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl--~~~P~L~aW~eRmke~~~~ 422 (586)
..++.+.+.+..+.+.|+ +++|++|+++|+||+++++.+.++...+. ++ ..+|+|.+|++||.+...-
T Consensus 127 ~~~~~l~~~l~~le~~L~---~~~~l~G~~~t~AD~~l~~~~~~~~~~~~--~~~~~~~p~l~~w~~~~~~rp~~ 196 (211)
T PRK09481 127 AARKQLREELLAIAPVFG---EKPYFMSEEFSLVDCYLAPLLWRLPVLGI--ELSGPGAKELKGYMTRVFERDSF 196 (211)
T ss_pred HHHHHHHHHHHHHHHHhc---cCCcccCCCccHHHHHHHHHHHHHHhcCC--CCCCCCChhHHHHHHHHhccHHH
Confidence 112233334445555555 67999999999999999999987764432 23 3479999999999988543
No 4
>PRK10387 glutaredoxin 2; Provisional
Probab=99.86 E-value=7.6e-21 Score=184.42 Aligned_cols=205 Identities=15% Similarity=0.265 Sum_probs=124.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc-hhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhhcccc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL-RQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYLSDTS 192 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~-~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyLee~~ 192 (586)
|+||++..||+|+|||++|+++||+|+.+.++... ...+..+|.++||+|+.++ | ..|+||.+|++||+ ++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~--g-~~l~eS~aI~~yL~----~~- 72 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDD--G-SYMPESLDIVHYID----EL- 72 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecC--C-eEecCHHHHHHHHH----Hh-
Confidence 58999999999999999999999999999886422 2235578999999996442 3 99999999999775 44
Q ss_pred ccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHHhhhhh
Q psy2688 193 VQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEALQSFE 272 (586)
Q Consensus 193 ~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~eal~~F~ 272 (586)
||+..+. +. +++++++|..|....+...+.+.+....
T Consensus 73 ---------~~~~~l~---~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 109 (210)
T PRK10387 73 ---------DGKPLLT---GK-----------------------RSPAIEEWLRKVFGYLNKLLYPRFAKAD-------- 109 (210)
T ss_pred ---------CCCccCC---Cc-----------------------ccHHHHHHHHHHHHHhhcchhcccccCC--------
Confidence 6653331 11 2345788888886655433222211100
Q ss_pred hhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccchHHHH
Q psy2688 273 WFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLKEEVR 352 (586)
Q Consensus 273 wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~~vr 352 (586)
.+. ...+...++++..+... .+.. +. +. ...++..
T Consensus 110 -----------~~~--~~~~~~~~~~~~~~~~~-----~~~~-------~~-------------~~-------~~~~~~~ 144 (210)
T PRK10387 110 -----------LPE--FATPSARQYFIDKKEAS-----IGDF-------DA-------------LL-------AHTPGLI 144 (210)
T ss_pred -----------Ccc--cCCHHHHHHHHHhHHhc-----cCCH-------HH-------------HH-------hcCHHHH
Confidence 000 00111222222211000 0100 00 00 0001122
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 353 ESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 353 e~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+.+...+..+.+.|+ + +|++|+++|+||+++++.+.++...+. +...|+|.+|++||.++.+
T Consensus 145 ~~~~~~l~~le~~L~---~-~~l~G~~~s~ADi~l~~~l~~~~~~~~---~~~~p~l~~w~~r~~~r~~ 206 (210)
T PRK10387 145 KEINADLRALDPLIV---K-PNAVNGELSTDDIHLFPILRNLTLVKG---IEWPPRVADYRDNMSKKTQ 206 (210)
T ss_pred HHHHHHHHHHHHHhc---C-ccccCCCCCHHHHHHHHHHhcceeecC---CCCCHHHHHHHHHHHHHhC
Confidence 223233333333443 4 999999999999999999999876532 2235999999999998754
No 5
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.1e-20 Score=181.27 Aligned_cols=193 Identities=22% Similarity=0.323 Sum_probs=131.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc---hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhhc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL---RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYLS 189 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~---~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyLe 189 (586)
++||+.+.||+|+|++++|.++||+|+.+.++... .+++ ..||.|+||+|++++ | ..|+||.+|++||+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~--~-~~l~ES~AI~~YL~---- 73 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDD--G-EVLTESGAILEYLA---- 73 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCC--C-CeeecHHHHHHHHH----
Confidence 47999999999999999999999999999998653 2334 479999999999764 3 49999999998775
Q ss_pred cccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHHhh
Q psy2688 190 DTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEALQ 269 (586)
Q Consensus 190 e~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~eal~ 269 (586)
++ ||+..+.|.++.++ .++++..+|..|.+..+.+.+....+..
T Consensus 74 ~~----------~~~~~l~p~~~~~r--------------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~------ 117 (211)
T COG0625 74 ER----------YPGPPLLPADPLAR--------------------RARALLLWWLFFAASDLHPVIGQRRRAL------ 117 (211)
T ss_pred hh----------CCCCCcCCCCchhH--------------------HHHHHHHHHHHHHHhcccHHHHHHHhhh------
Confidence 44 66654666555321 2466788999998766554422111100
Q ss_pred hhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccchH
Q psy2688 270 SFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLKE 349 (586)
Q Consensus 270 ~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~ 349 (586)
+.. ... ....+. +
T Consensus 118 ----------------------------------~~~-----~~~--~~~~~~--------------------------~ 130 (211)
T COG0625 118 ----------------------------------LGS-----EPE--LLEAAL--------------------------E 130 (211)
T ss_pred ----------------------------------ccc-----ccc--ccHHHH--------------------------H
Confidence 000 000 000000 1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 350 EVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 350 ~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
..++.+...+..+.+.|. +++|++|+++|+||+++++.+.++...+. +..++|+|.+|++||.+...
T Consensus 131 ~~~~~~~~~l~~le~~L~---~~~~l~G~~~tiAD~~~~~~~~~~~~~~~--~~~~~p~l~~w~~r~~~rp~ 197 (211)
T COG0625 131 AARAEIRALLALLEALLA---DGPYLAGDRFTIADIALAPLLWRLALLGE--ELADYPALKAWYERVLARPA 197 (211)
T ss_pred HHHHHHHHHHHHHHHHhc---cCCcccCCCCCHHHHHHHHHHHHhhhcCc--ccccChHHHHHHHHHHcCCc
Confidence 112222233344444555 68999999999999999999998665543 23568999999999987654
No 6
>PLN02473 glutathione S-transferase
Probab=99.84 E-value=4.1e-20 Score=180.33 Aligned_cols=195 Identities=12% Similarity=0.211 Sum_probs=124.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----h-hhccCCCceeeEEEEccCCCcEEecChHHHHHHHHhh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----Q-QIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASY 187 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~-~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaey 187 (586)
.++||+.+.||+|+||+++|.++||+|+.+.++.... + .+..||.++||+|+++| ..|+||.+|++||++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g----~~l~ES~aI~~YL~~- 76 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGD----LKLFESRAIARYYAT- 76 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECC----EEEEehHHHHHHHHH-
Confidence 5799999999999999999999999999999875432 2 23479999999998643 999999999997764
Q ss_pred hccccccchhccccCCCC--CCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchH
Q psy2688 188 LSDTSVQLEEVASYFPET--EYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKE 265 (586)
Q Consensus 188 Lee~~~~~~~~~~lYP~~--~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~ 265 (586)
. ||+. ++.|.++. +++++++|..|.++.+...+.+.++...
T Consensus 77 ---~----------~~~~~~~l~p~~~~-----------------------~ra~~~~~~~~~~~~~~~~~~~~~~~~~- 119 (214)
T PLN02473 77 ---K----------YADQGTDLLGKTLE-----------------------HRAIVDQWVEVENNYFYAVALPLVINLV- 119 (214)
T ss_pred ---H----------cCCcCCCCCCCCHH-----------------------HHHHHHHHHHHHHhcccHHHHHHHHHHH-
Confidence 3 4321 34444433 3567889999887654332111110000
Q ss_pred HHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhc
Q psy2688 266 EALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRH 345 (586)
Q Consensus 266 eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~ 345 (586)
+.. ..+.+ .+ ..+.
T Consensus 120 --------~~~--------------------------~~~~~------~~---~~~~----------------------- 133 (214)
T PLN02473 120 --------FKP--------------------------RLGEP------CD---VALV----------------------- 133 (214)
T ss_pred --------hcc--------------------------cccCC------CC---hHHH-----------------------
Confidence 000 00000 00 0000
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccccc-CCCCCCHHHHHHHHhhhhh
Q psy2688 346 NLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKD-LMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 346 ~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d-l~~~P~L~aW~eRmke~~~ 421 (586)
+..++.+...++.+.+.|+ +++|++||++|+||+++++.+.++.......+ +.++|+|.+|++||.+...
T Consensus 134 ---~~~~~~~~~~l~~le~~L~---~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~ 204 (214)
T PLN02473 134 ---EELKVKFDKVLDVYENRLA---TNRYLGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPA 204 (214)
T ss_pred ---HHHHHHHHHHHHHHHHHhc---cCCcccCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChh
Confidence 0111122222333344454 67899999999999999999887653322111 3457999999999998644
No 7
>PRK15113 glutathione S-transferase; Provisional
Probab=99.84 E-value=8.7e-20 Score=179.15 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=79.7
Q ss_pred CCcEEEEEcC--CChhHHHHHHHHHhcCCCeEEEEecccch----hh-hccCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 111 GLKITLFQYP--TCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQ-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 111 ~~~I~LY~~~--~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
.++++||+.+ .||+|++|+++|.++||+||.+.+++..+ ++ ++.||.|+||+|+++| ..|+||.+|++|
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~----~~l~ES~aI~~Y 78 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDD----FELSESSAIAEY 78 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECC----EEEecHHHHHHH
Confidence 3468999975 79999999999999999999999986432 33 3479999999999754 999999999997
Q ss_pred HHhhhccccccchhccccCCCCC---CCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhch
Q psy2688 184 LASYLSDTSVQLEEVASYFPETE---YRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLV 253 (586)
Q Consensus 184 LaeyLee~~~~~~~~~~lYP~~~---l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~ 253 (586)
|++ . ||+.+ ++|.++. +++++++|..|.+..+.
T Consensus 79 L~~----~----------~~~~~~~~l~p~~~~-----------------------~ra~~~~~~~~~~~~~~ 114 (214)
T PRK15113 79 LEE----R----------FAPPAWERIYPADLQ-----------------------ARARARQIQAWLRSDLM 114 (214)
T ss_pred HHH----H----------cCCCCccccCCCCHH-----------------------HHHHHHHHHHHHHhhhH
Confidence 764 3 44433 5554543 45678999999986654
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.83 E-value=1.3e-19 Score=177.72 Aligned_cols=190 Identities=21% Similarity=0.324 Sum_probs=120.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hh-hccCCCceeeEEEEcc-CCCc--EEecChHHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQ-IKWSSYKKVPILLVKV-PNGY--QQMNDSSMIVSCL 184 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~-l~~sp~gkVPvL~idg-~dG~--~~I~eS~aIi~yL 184 (586)
|++||+.+ +|+|++|+++|.++||+||.+.++...+ ++ +++||.|+||+|++++ .||+ ..|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999877 7999999999999999999999985432 33 3479999999999731 0223 4799999999988
Q ss_pred HhhhccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccch
Q psy2688 185 ASYLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTK 264 (586)
Q Consensus 185 aeyLee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~ 264 (586)
++ . ||. +.|.++. +++++++|..|.+..+...+... +.
T Consensus 80 ~~----~----------~~~--l~p~~~~-----------------------~ra~~~~~~~~~~~~~~~~~~~~-~~-- 117 (215)
T PRK13972 80 AE----K----------TGL--FLSHETR-----------------------ERAATLQWLFWQVGGLGPMLGQN-HH-- 117 (215)
T ss_pred HH----h----------cCC--CCCCCHH-----------------------HHHHHHHHHHHHhhccCcceeee-ee--
Confidence 64 3 331 2233332 45678999999987654332110 00
Q ss_pred HHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhh
Q psy2688 265 EEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKR 344 (586)
Q Consensus 265 ~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~ 344 (586)
| .. .+ +. .-+.+.
T Consensus 118 ------~---~~-------------------------------~~--~~---~~~~~~---------------------- 130 (215)
T PRK13972 118 ------F---NH-------------------------------AA--PQ---TIPYAI---------------------- 130 (215)
T ss_pred ------e---ec-------------------------------cC--CC---CCchHH----------------------
Confidence 0 00 00 00 000000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 345 HNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 345 ~~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+..++.+...+..+.+.|. +++|++|+++|+||+++++.+....... .++.++|+|.+|++||.++..
T Consensus 131 ----~~~~~~~~~~l~~le~~L~---~~~~l~Gd~~t~ADi~l~~~~~~~~~~~--~~~~~~P~l~~w~~r~~~rp~ 198 (215)
T PRK13972 131 ----ERYQVETQRLYHVLNKRLE---NSPWLGGENYSIADIACWPWVNAWTRQR--IDLAMYPAVKNWHERIRSRPA 198 (215)
T ss_pred ----HHHHHHHHHHHHHHHHHhc---cCccccCCCCCHHHHHHHHHHHHHhhcC--CcchhCHHHHHHHHHHHhCHH
Confidence 0011122222333444554 6799999999999999988774433222 134568999999999998743
No 9
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.82 E-value=2.1e-19 Score=173.24 Aligned_cols=183 Identities=17% Similarity=0.290 Sum_probs=122.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-----hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHhh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-----QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASY 187 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-----~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaey 187 (586)
++||+..++ ++++++++|.++||+|+.+.++...+ +++ ++||.|+||+|++++ | ..|.||.+|++||+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~--g-~~l~eS~aI~~YL~-- 74 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDD--G-TLLTEGVAIMQYLA-- 74 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCC--C-cEeecHHHHHHHHH--
Confidence 478988765 68999999999999999999986432 233 479999999998643 3 89999999999775
Q ss_pred hccccccchhccccCCCCCCCC-CChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHH
Q psy2688 188 LSDTSVQLEEVASYFPETEYRD-DDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEE 266 (586)
Q Consensus 188 Lee~~~~~~~~~~lYP~~~l~p-~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~e 266 (586)
+. ||+.++.+ .++ .+++++++|..|++..+.+.+.+.....
T Consensus 75 --~~----------~~~~~l~~p~~~-----------------------~~ra~~~~~~~~~~~~~~~~~~~~~~~~--- 116 (201)
T PRK10542 75 --DS----------VPDRQLLAPVGS-----------------------LSRYHTIEWLNYIATELHKGFTPLFRPD--- 116 (201)
T ss_pred --Hh----------CcccccCCCCCc-----------------------HHHHHHHHHHHHHHhhhhhhhhhccCCC---
Confidence 44 55544432 222 2356778899988766543211100000
Q ss_pred HhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhcc
Q psy2688 267 ALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHN 346 (586)
Q Consensus 267 al~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~ 346 (586)
.. ..+.
T Consensus 117 --------------------------------------------~~------~~~~------------------------ 122 (201)
T PRK10542 117 --------------------------------------------TP------EEYK------------------------ 122 (201)
T ss_pred --------------------------------------------Ch------HHHH------------------------
Confidence 00 0000
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 347 LKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 347 l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+..++.+...+..+.+.|+ +++||+|+++|+||+++++++.++..... ++..+|+|.+|++||.+...
T Consensus 123 --~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~ 190 (201)
T PRK10542 123 --PTVRAQLEKKFQYVDEALA---DEQWICGQRFTIADAYLFTVLRWAYAVKL--NLEGLEHIAAYMQRVAERPA 190 (201)
T ss_pred --HHHHHHHHHHHHHHHHHhc---CCCeeeCCCCcHHhHHHHHHHHHhhccCC--CcccchHHHHHHHHHHcCHH
Confidence 0011222233344444555 67899999999999999999988755432 34468999999999988753
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.81 E-value=6.2e-19 Score=171.04 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=123.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc-----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhh
Q psy2688 115 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL-----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYL 188 (586)
Q Consensus 115 ~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~-----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyL 188 (586)
+||++..||+|+++|++|.++||+|+.+.++... .+++ +.||.++||+|+++| ..|+||.+|++||++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g----~~l~ES~aI~~yl~~-- 74 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDG----EVLTQSLAIIEYLEE-- 74 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECC----EEeecHHHHHHHHHH--
Confidence 4899999999999999999999999999888521 2333 479999999999743 999999999998764
Q ss_pred ccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHHh
Q psy2688 189 SDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEAL 268 (586)
Q Consensus 189 ee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~eal 268 (586)
. ||+..+.|.++. +++++++|..|++..+.......++
T Consensus 75 --~----------~~~~~l~p~~~~-----------------------~~a~~~~~~~~~~~~~~~~~~~~~~------- 112 (210)
T TIGR01262 75 --T----------YPDPPLLPADPI-----------------------KRARVRALALLIACDIHPLNNLRVL------- 112 (210)
T ss_pred --h----------CCCCCCCCCCHH-----------------------HHHHHHHHHHHHhcccChhhhhhHH-------
Confidence 3 554445553432 3567788888876544321100000
Q ss_pred hhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccch
Q psy2688 269 QSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLK 348 (586)
Q Consensus 269 ~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~ 348 (586)
.++.. . .+.-+ ... .
T Consensus 113 ---~~~~~------------------------------~---~~~~~---~~~--------------------------~ 127 (210)
T TIGR01262 113 ---QYLRE------------------------------K---LGVEE---EAR--------------------------N 127 (210)
T ss_pred ---HHHHh------------------------------h---cCCCH---HHH--------------------------H
Confidence 00000 0 00000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 349 EEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 349 ~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+..++.+...+..+.+.|..+ +++||+|+++|+||+++++.+.++..... ++.++|+|.+|++||.+...
T Consensus 128 ~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~T~ADi~~~~~l~~~~~~~~--~~~~~p~l~~~~~~~~~rp~ 197 (210)
T TIGR01262 128 RWYQHWISKGFAALEALLQPH-AGAFCVGDTPTLADLCLVPQVYNAERFGV--DLTPYPTLRRIAAALAALPA 197 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCEeeCCCCCHHHHHHHHHHHHHHHcCC--CcccchHHHHHHHHHhcCHH
Confidence 001122333344555556522 35799999999999999999988764431 34568999999999988743
No 11
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.81 E-value=5.2e-19 Score=173.80 Aligned_cols=69 Identities=26% Similarity=0.450 Sum_probs=57.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc-chhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 115 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV-LRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 115 ~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~-~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+||++..||||+|||++|+++|++|+.+.++.. ....++.||.++||+|+.++ | ..++||.+|++||++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~--g-~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDD--G-RAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeC--C-eEeccHHHHHHHHHH
Confidence 589999999999999999999999999877532 22336689999999998432 3 999999999997753
No 12
>PLN02395 glutathione S-transferase
Probab=99.81 E-value=7.4e-19 Score=171.36 Aligned_cols=194 Identities=13% Similarity=0.180 Sum_probs=124.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHhh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASY 187 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaey 187 (586)
.++||+.+.| +++|++++|.++|++|+.+.+++.. .+++ +.||.|+||+|+++| ..|.||.+|++||++
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~----~~l~ES~aI~~YL~~- 75 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGD----YKIFESRAIMRYYAE- 75 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECC----EEEEcHHHHHHHHHH-
Confidence 5899987665 5899999999999999999998632 2333 479999999998653 899999999997753
Q ss_pred hccccccchhccccCCC--CCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchH
Q psy2688 188 LSDTSVQLEEVASYFPE--TEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKE 265 (586)
Q Consensus 188 Lee~~~~~~~~~~lYP~--~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~ 265 (586)
+ ||+ .++.|.++. +++++++|..|.+..+...+....+...
T Consensus 76 ---~----------~~~~~~~l~p~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 118 (215)
T PLN02395 76 ---K----------YRSQGPDLLGKTIE-----------------------ERGQVEQWLDVEATSYHPPLLNLTLHIL- 118 (215)
T ss_pred ---H----------cCCCCcCcCCCChh-----------------------HHHHHHHHHHHHHHhcCchHHHHHHHHH-
Confidence 3 442 134444433 3567899999988776543211110000
Q ss_pred HHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhc
Q psy2688 266 EALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRH 345 (586)
Q Consensus 266 eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~ 345 (586)
| ....+ .+. -+.+
T Consensus 119 -----~---------------------------------~~~~~-~~~----~~~~------------------------ 131 (215)
T PLN02395 119 -----F---------------------------------ASKMG-FPA----DEKV------------------------ 131 (215)
T ss_pred -----h---------------------------------hhhcc-CCC----cHHH------------------------
Confidence 0 00000 000 0000
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhc-cccccCCCCCCHHHHHHHHhhhhh
Q psy2688 346 NLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGC-EAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 346 ~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~-~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
.+..++.+...+..+.+.|+ +++|++|+++|+||+++++++.++... .....+.++|+|.+|++||.+...
T Consensus 132 --~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~ 203 (215)
T PLN02395 132 --IKESEEKLAKVLDVYEARLS---KSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPA 203 (215)
T ss_pred --HHHHHHHHHHHHHHHHHHhc---CCccccCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChH
Confidence 01112233344455555665 678999999999999999988776321 111124457999999999998643
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.80 E-value=1.6e-18 Score=167.77 Aligned_cols=190 Identities=17% Similarity=0.198 Sum_probs=123.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchh-h-hccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhhccc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ-Q-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYLSDT 191 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~-~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyLee~ 191 (586)
++||++..||+++++|++|+++|++||.+.++....+ . ...||.++||+|++++ | ..++||.+|++||++ .
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~--g-~~l~eS~aI~~yL~~----~ 73 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEE--G-ECWFDSPIIAEYIEL----L 73 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCC--C-CeeecHHHHHHHHHH----h
Confidence 4799999999999999999999999999988764332 2 2369999999999653 3 899999999998764 3
Q ss_pred cccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHHhhhh
Q psy2688 192 SVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEALQSF 271 (586)
Q Consensus 192 ~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~eal~~F 271 (586)
||+..++|.++. +++++++|..|++..+...+. .++
T Consensus 74 ----------~~~~~l~p~~~~-----------------------~~a~~~~~~~~~~~~~~~~~~--~~~--------- 109 (202)
T PRK10357 74 ----------NVAPAMLPRDPL-----------------------AALRVRQLEALADGIMDAALV--SVR--------- 109 (202)
T ss_pred ----------CCCCCCCCCCHH-----------------------HHHHHHHHHHHHHHHHHHHHH--HHH---------
Confidence 554445554443 345678888887755432210 000
Q ss_pred hhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccchHHH
Q psy2688 272 EWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLKEEV 351 (586)
Q Consensus 272 ~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~~v 351 (586)
. . .+. ..+ ..+. .+ +..
T Consensus 110 ----~------------------------~-~~~-----~~~---~~~~---~~-----------------------~~~ 126 (202)
T PRK10357 110 ----E------------------------Q-ARP-----AAQ---QSED---EL-----------------------LRQ 126 (202)
T ss_pred ----H------------------------H-hCc-----ccc---ccHH---HH-----------------------HHH
Confidence 0 0 000 000 0000 00 111
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccccc-CCCCCCHHHHHHHHhhhhh
Q psy2688 352 RESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKD-LMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 352 re~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d-l~~~P~L~aW~eRmke~~~ 421 (586)
++.+...++.+.+.|. +++ ++||++|+||+++++.+.++........ ..++|+|.+|++||.++..
T Consensus 127 ~~~l~~~l~~le~~L~---~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~ 193 (202)
T PRK10357 127 REKINRSLDALEGYLV---DGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRES 193 (202)
T ss_pred HHHHHHHHHHHHHhhc---cCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChh
Confidence 2223333444444554 566 9999999999999999988754321112 2457999999999998754
No 14
>KOG0406|consensus
Probab=99.80 E-value=1.6e-18 Score=173.27 Aligned_cols=186 Identities=23% Similarity=0.344 Sum_probs=133.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhh--ccC-CCceeeEEEEccCCCcEEecChHHHHHHHHhhh
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQI--KWS-SYKKVPILLVKVPNGYQQMNDSSMIVSCLASYL 188 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l--~~s-p~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyL 188 (586)
..++||++-.|||.+|++++|+.|||+||.++.|...+.++ ..| +.++||||+++| ..|+||..|++||
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~----k~i~ESliiveYi---- 79 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNG----KPICESLIIVEYI---- 79 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECC----ceehhhHHHHHHH----
Confidence 56999999999999999999999999999999998666554 357 799999999976 7899999998855
Q ss_pred ccccccchhccccCC-CCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHHH
Q psy2688 189 SDTSVQLEEVASYFP-ETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEEA 267 (586)
Q Consensus 189 ee~~~~~~~~~~lYP-~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~ea 267 (586)
|++ || ..+++|.||-+ |+..+.|..++|+.+..+..
T Consensus 80 De~----------w~~~~~iLP~DPy~-----------------------Ra~arfwa~~id~~~~~~~~---------- 116 (231)
T KOG0406|consen 80 DET----------WPSGPPILPSDPYE-----------------------RAQARFWAEYIDKKVFFVGR---------- 116 (231)
T ss_pred Hhh----------ccCCCCCCCCCHHH-----------------------HHHHHHHHHHHHhHHHHHHH----------
Confidence 566 88 47888888754 45789999999987543210
Q ss_pred hhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccc
Q psy2688 268 LQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNL 347 (586)
Q Consensus 268 l~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l 347 (586)
+-|... -|+ -
T Consensus 117 ---~~~~~~----------------------------------~~e---------------------------------~ 126 (231)
T KOG0406|consen 117 ---FVVAAK----------------------------------GGE---------------------------------E 126 (231)
T ss_pred ---HHHhhc----------------------------------Cch---------------------------------H
Confidence 000000 000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHH-hhhhcccc-----ccCCCCCCHHHHHHHHhhhh
Q psy2688 348 KEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLS-SIEGCEAF-----KDLMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 348 ~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~-~l~~~~~~-----~dl~~~P~L~aW~eRmke~~ 420 (586)
.+.+.+.+.+.+..+++.|.+ +.+|++|+++++.|+++++.+. +......+ ..-...|+|.+|.+||++..
T Consensus 127 ~~~~~~e~~e~l~~lE~el~k--~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~ 203 (231)
T KOG0406|consen 127 QEAAKEELREALKVLEEELGK--GKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDE 203 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcCh
Confidence 011223344555666667763 7899999999999999995443 33322221 12234699999999999863
No 15
>PRK11752 putative S-transferase; Provisional
Probab=99.79 E-value=4.1e-18 Score=173.73 Aligned_cols=193 Identities=17% Similarity=0.258 Sum_probs=122.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCCeEEEEecccch----hh-hccCCCceeeEEEEccCCCcEEecChHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVNAVLR----QQ-IKWSSYKKVPILLVKVPNGYQQMNDSSMIV 181 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ek------GI~YE~v~Vd~~~~----~~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi 181 (586)
+++||+.+ ||+|++|+++|.++ |++||.+.++.... ++ +++||.++||+|++++.+++..|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 69999865 99999999999997 99999999875432 23 348999999999986412248999999999
Q ss_pred HHHHhhhccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccc
Q psy2688 182 SCLASYLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVY 261 (586)
Q Consensus 182 ~yLaeyLee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vy 261 (586)
+||++ . ||. +.|.++. +++++++|..|++..+ ..+..
T Consensus 123 ~YL~~----~----------~~~--L~P~~~~-----------------------era~v~~wl~~~~~~~-~~~~~--- 159 (264)
T PRK11752 123 LYLAE----K----------FGA--FLPKDLA-----------------------ARTETLNWLFWQQGSA-PFLGG--- 159 (264)
T ss_pred HHHHH----h----------cCC--cCCCCHH-----------------------HHHHHHHHHHHHhhhh-hHHHH---
Confidence 98764 3 432 4443433 3567889998876542 11000
Q ss_pred cchHHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHh
Q psy2688 262 RTKEEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRL 341 (586)
Q Consensus 262 r~~~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~l 341 (586)
.|.++.. +. ++ ....+.
T Consensus 160 --------~~~~~~~---------------------------~~------~~---~~~~~~------------------- 176 (264)
T PRK11752 160 --------GFGHFYA---------------------------YA------PE---KIEYAI------------------- 176 (264)
T ss_pred --------HHHHHHH---------------------------hC------Cc---cchHHH-------------------
Confidence 0000000 00 00 000000
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcc-----ccccCCCCCCHHHHHHHH
Q psy2688 342 KKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCE-----AFKDLMAKSKIKPWYERM 416 (586)
Q Consensus 342 kk~~~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~-----~~~dl~~~P~L~aW~eRm 416 (586)
+..++.+...++.+.+.|+ +++||+|+++|+||+++++.+.++.... .+.++.++|+|.+|++||
T Consensus 177 -------~~~~~~~~~~L~~le~~L~---~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv 246 (264)
T PRK11752 177 -------NRFTMEAKRQLDVLDKQLA---EHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEI 246 (264)
T ss_pred -------HHHHHHHHHHHHHHHHHhc---cCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHH
Confidence 0111222233444555565 6789999999999999998876653211 111345689999999999
Q ss_pred hhhhhc
Q psy2688 417 RTNVTN 422 (586)
Q Consensus 417 ke~~~~ 422 (586)
.+....
T Consensus 247 ~~rPs~ 252 (264)
T PRK11752 247 AERPAV 252 (264)
T ss_pred HhCHHH
Confidence 987543
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.72 E-value=1.1e-16 Score=157.64 Aligned_cols=65 Identities=26% Similarity=0.392 Sum_probs=55.0
Q ss_pred EcCCChhHHHHHHHHHhcCCCeEEEEecccchh--hhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 118 QYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ--QIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 118 ~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~--~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.+..||||+||+++|+++|++|+.+.+|...++ -+++||.|+||+|+++| ..|+||.+|++||++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~----~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDD----KWVTDSDVIVGILEE 82 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECC----EEecCHHHHHHHHHH
Confidence 445699999999999999999999999875443 34589999999998754 899999999997764
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.71 E-value=3.6e-16 Score=152.82 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=59.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchh-----hh---ccCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ-----QI---KWSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~-----~l---~~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
..++||+++.++.|.++|++|.++|++|+.+.++....+ ++ ..+|.++||+|++|| ..|+||.||++|
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~----~~l~eS~AI~~Y 78 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDN----IIFAQSQAIVRY 78 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECC----EEEecHHHHHHH
Confidence 348999999999999999999999999999977532111 11 369999999999754 999999999998
Q ss_pred HHhh
Q psy2688 184 LASY 187 (586)
Q Consensus 184 Laey 187 (586)
|++.
T Consensus 79 La~~ 82 (205)
T PTZ00057 79 LSKK 82 (205)
T ss_pred HHHH
Confidence 8753
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.70 E-value=2.6e-16 Score=161.20 Aligned_cols=64 Identities=28% Similarity=0.464 Sum_probs=53.8
Q ss_pred cCCChhHHHHHHHHHhcCCCeEEEEecccch-h-hhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 119 YPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-Q-QIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 119 ~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~-~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
...||||++++++|.++||+|+.+.++.... + -+++||.++||+|+++| ..|+||.+|++||++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~----~~L~ES~aI~~YL~e 135 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDE----KWVADSDVITQALEE 135 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECC----EEEecHHHHHHHHHH
Confidence 4459999999999999999999999986443 2 24589999999999754 799999999997753
No 19
>KOG0867|consensus
Probab=99.69 E-value=4.7e-16 Score=155.58 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=130.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchh----h-hccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ----Q-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~----~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+.++||+.+.+|.|+++.+++.++|++||.+.++...++ + ++.||.++||+|+++ +..++||.||+.||++
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~----~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDG----GLTLWESHAILRYLAE 76 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecC----CeEEeeHHHHHHHHHH
Confidence 357899999999999999999999999999988754443 2 347999999999964 3999999999999998
Q ss_pred hhccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccc--cccccch
Q psy2688 187 YLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLS--PNVYRTK 264 (586)
Q Consensus 187 yLee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~--p~vyr~~ 264 (586)
++. ... ..+||. +. .+++.+.+|..|....|..... ..+.+..
T Consensus 77 ky~-~~~-----~~l~p~------~~-----------------------~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~ 121 (226)
T KOG0867|consen 77 KYG-PLG-----GILLPK------DL-----------------------KERAIVDQWLEFENGVLDPVTFERPILAPLL 121 (226)
T ss_pred HcC-CCC-----cccCCc------CH-----------------------HHHHHHHHHHHhhhcccccccccceeeecce
Confidence 655 311 114554 22 2456788999888887765421 1111100
Q ss_pred HHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhh
Q psy2688 265 EEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKR 344 (586)
Q Consensus 265 ~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~ 344 (586)
++..++ .... +.+
T Consensus 122 ---------------------------------------~~~~~~------~~~~-------------------~~~--- 134 (226)
T KOG0867|consen 122 ---------------------------------------VGLPLN------PTAV-------------------KEL--- 134 (226)
T ss_pred ---------------------------------------ecccCc------chhh-------------------HHH---
Confidence 000000 0000 000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhh--hccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 345 HNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIE--GCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 345 ~~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~--~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
.+.++. .++.++.|+ . +++|+.|+++|+||+.+...+..+. .. ...+..++|++.+|+++|++.+.
T Consensus 135 ---~~~~~~-~~~~~e~~l---~---~~~yl~g~~~tlADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~ 202 (226)
T KOG0867|consen 135 ---EAKLRK-ALDNLERFL---K---TQVYLAGDQLTLADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPA 202 (226)
T ss_pred ---HHHHHH-HHHHHHHHH---c---cCCcccCCcccHHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCcc
Confidence 012222 234444444 3 6799999999999999999998883 22 12345568999999999998743
No 20
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.69 E-value=8.1e-16 Score=155.29 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=55.1
Q ss_pred cCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 119 YPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 119 ~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.+.||||++++++|.++||+|+.+.+|+..+ +++ ++||.++||+|+++| ..|+||.+|++||++
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g----~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNT----EVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECC----EEeecHHHHHHHHHH
Confidence 4689999999999999999999999997654 344 479999999999743 999999999987753
No 21
>KOG0868|consensus
Probab=99.62 E-value=3e-15 Score=143.42 Aligned_cols=190 Identities=19% Similarity=0.297 Sum_probs=126.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-----hhhc-cCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-----QQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-----~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
..+||+|--|..+++||.+|..|||+||.+.++.... .+++ +||.++||+|++|| ..|.||.||+.||
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g----~tl~eS~AII~YL-- 78 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDG----LTLTESLAIIEYL-- 78 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECC----EEeehHHHHHHHH--
Confidence 4679999777778999999999999999999985433 1333 79999999999975 9999999999865
Q ss_pred hhccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhccccccccchHH
Q psy2688 187 YLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYRTKEE 266 (586)
Q Consensus 187 yLee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr~~~e 266 (586)
+++ ||+++|.|.++..|+ ..|+...-+-+.+.++--..+++.+.|
T Consensus 79 --eEt----------~P~ppLLP~d~~KRA-----------------------~~r~i~~~i~sgIQPlQNl~vl~~l~e 123 (217)
T KOG0868|consen 79 --EET----------YPDPPLLPKDPHKRA-----------------------KARAISLLIASGIQPLQNLSVLKMLNE 123 (217)
T ss_pred --Hhc----------CCCCCCCCcCHHHHH-----------------------HHHHHHHHHHhCCCcchhhHHHHHhcc
Confidence 566 999999998876543 334444333333332211111111110
Q ss_pred HhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhcc
Q psy2688 267 ALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHN 346 (586)
Q Consensus 267 al~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~ 346 (586)
.. .|. --+|.. .++.+-
T Consensus 124 k~------------------------------------------~~~----~~~W~q-----------~~ItkG------ 140 (217)
T KOG0868|consen 124 KE------------------------------------------PGY----GDQWAQ-----------HFITKG------ 140 (217)
T ss_pred cc------------------------------------------cch----hhHHHH-----------HHHHHh------
Confidence 00 000 011211 112111
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 347 LKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 347 l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+.++++ .|..+ .++|-+||+.|+||+.+.+.+..++.+. -++..+|-|.+-.+.+.+...
T Consensus 141 ---------F~ALEk---lL~~~-aGkycvGDevtiADl~L~pqv~nA~rf~--vdl~PYPti~ri~e~l~elpa 200 (217)
T KOG0868|consen 141 ---------FTALEK---LLKSH-AGKYCVGDEVTIADLCLPPQVYNANRFH--VDLTPYPTITRINEELAELPA 200 (217)
T ss_pred ---------HHHHHH---HHHHc-cCCcccCceeehhhhccchhhhhhhhcc--ccCCcCchHHHHHHHHHhCHH
Confidence 122233 33433 6899999999999999999999987665 378889999999999888753
No 22
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.54 E-value=1.7e-14 Score=119.51 Aligned_cols=76 Identities=67% Similarity=1.141 Sum_probs=65.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYL 188 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyL 188 (586)
.++||+++.||+|+|+|.+|+++||+|+.+.+++....+++.+|.++||+|++++.+++..|+||.+|++||+++|
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 3799999999999999999999999999999987655566779999999999763112489999999999998765
No 23
>KOG4244|consensus
Probab=99.51 E-value=2.3e-13 Score=137.55 Aligned_cols=218 Identities=22% Similarity=0.396 Sum_probs=132.8
Q ss_pred CCCcEEEEEcC-------CChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 110 TGLKITLFQYP-------TCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 110 ~~~~I~LY~~~-------~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
....|-|||++ .||||.|+..+|+..+||||.+..... ..|..|++|-++.+| +.+.||+.|+.
T Consensus 42 kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----~rSr~G~lPFIELNG----e~iaDS~~I~~ 112 (281)
T KOG4244|consen 42 KKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----RRSRNGTLPFIELNG----EHIADSDLIED 112 (281)
T ss_pred ccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----eeccCCCcceEEeCC----eeccccHHHHH
Confidence 35578999993 789999999999999999998865541 468999999999986 99999999999
Q ss_pred HHHhhhccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhcccccccc
Q psy2688 183 CLASYLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYR 262 (586)
Q Consensus 183 yLaeyLee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr 262 (586)
+|.+++. .|+. | + +. +++..+....-+|++|...+. .|+
T Consensus 113 ~L~~hf~------------~~~~-L-~--~e-----------------------~~a~s~Al~rm~dnhL~~~l~--y~k 151 (281)
T KOG4244|consen 113 RLRKHFK------------IPDD-L-S--AE-----------------------QRAQSRALSRMADNHLFWILL--YYK 151 (281)
T ss_pred HHHHHcC------------CCCC-C-C--HH-----------------------HHHHHHHHHHHHHHHHHHHHH--Hhh
Confidence 9876533 2321 1 1 11 234445555566666554321 122
Q ss_pred chHHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhh
Q psy2688 263 TKEEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLK 342 (586)
Q Consensus 263 ~~~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lk 342 (586)
.. .+.|+....+....+ .+ + + -.++.+++. .. .+++..
T Consensus 152 ~~-----~~~~~~~~~~~~~l~-~~--l---------------------------~----~~l~~~~~~--~~-f~~kv~ 189 (281)
T KOG4244|consen 152 GA-----DDAWLNTDRKLIGLP-GF--L---------------------------F----PLLLPLFWK--AI-FGKKVY 189 (281)
T ss_pred hc-----chHHHHHHHhccCcc-cc--c---------------------------h----HHHHHHHHH--HH-HHHHHH
Confidence 21 122332211111000 00 0 0 111112211 01 111111
Q ss_pred hhc--cchHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCCChhhhhHHHHHHhhhhccc---cccCCC--CCCHHHHHH
Q psy2688 343 KRH--NLKEEVRESLYDECNQWVKTIEKR-ENGPFFGGQKPNLADLAVYGVLSSIEGCEA---FKDLMA--KSKIKPWYE 414 (586)
Q Consensus 343 k~~--~l~~~vre~L~d~l~~~l~aL~~~-~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~---~~dl~~--~P~L~aW~e 414 (586)
+|. .+-+-..+++.+.+.+.+++++.. ++.+||.||++|-+|+++||+|..+-+ +. ..++++ .|+|..+++
T Consensus 190 ~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYce 268 (281)
T KOG4244|consen 190 KRSTGAIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCE 268 (281)
T ss_pred HHhhccccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHH
Confidence 111 121112233556666777666654 588999999999999999999999987 31 134554 599999999
Q ss_pred HHhhhh
Q psy2688 415 RMRTNV 420 (586)
Q Consensus 415 Rmke~~ 420 (586)
||++.+
T Consensus 269 RIr~~~ 274 (281)
T KOG4244|consen 269 RIRKEI 274 (281)
T ss_pred HHHHHh
Confidence 999864
No 24
>KOG4420|consensus
Probab=99.47 E-value=5.2e-13 Score=134.40 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=61.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhh-----hccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQ-----IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~-----l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.+.||+.+.|-.++|||+.+.+|||+|+...|++..+++ ++.||.+.||||+++ ..+|.|+..||.|+++
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g----~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHG----DNIISDYTQIIDYVER 100 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecC----CeecccHHHHHHHHHH
Confidence 388999999999999999999999999999999776654 346999999999954 4899999999998865
No 25
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.46 E-value=1.8e-13 Score=114.24 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=60.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc--hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL--RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~--~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+++||+++.||+|+||+++|+++||+|+.+.++... .+++ +.||.++||+|++++ |+..++||.+|++||++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~--~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPN--TGVQMFESADIVKYLFK 75 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCC--CCeEEEcHHHHHHHHHH
Confidence 479999999999999999999999999999886422 2333 479999999998753 34899999999998864
No 26
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.40 E-value=4.9e-13 Score=109.20 Aligned_cols=69 Identities=28% Similarity=0.460 Sum_probs=58.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc-hhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL-RQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLA 185 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~-~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLa 185 (586)
++||++..||||+|+|++|.++|++|+.+.++... ...++.+|.++||+|++++ | ..++||.+|++||+
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~--~-~~l~es~aI~~yL~ 70 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDD--G-SFMAESLDIVAFID 70 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCC--C-eEeehHHHHHHHHh
Confidence 47999999999999999999999999999887532 2334578999999999752 3 89999999999885
No 27
>PLN02907 glutamate-tRNA ligase
Probab=99.40 E-value=4.5e-12 Score=145.65 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.++||+.+.++ +.++.++|.+.|++|+.+. .+|.++||+|++++ | ..+.||.||++||++
T Consensus 2 ~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~----------~~p~GkVPvLv~dd--G-~~L~ES~AIl~YLa~ 61 (722)
T PLN02907 2 EAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP----------SLKSGSAPTLLFSS--G-EKLTGTNVLLRYIAR 61 (722)
T ss_pred eEEEEECCCCC-hHHHHHHHHHcCCCcEEee----------cCCCCCCcEEEECC--C-CEEECHHHHHHHHHH
Confidence 37899888765 4568999999999999875 25799999999753 4 899999999998764
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.36 E-value=1.7e-12 Score=107.70 Aligned_cols=67 Identities=30% Similarity=0.560 Sum_probs=58.0
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 116 LFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 116 LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
||++++||||+|+|++|+++||+|+.+.++.... .++ +.+|.++||+|++|| ..++||.+|++||++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g----~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDG----EVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETT----EEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECC----EEEeCHHHHHHHHHH
Confidence 7999999999999999999999999999986543 333 479999999999653 999999999997754
No 29
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.34 E-value=2.6e-12 Score=105.07 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=58.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLA 185 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLa 185 (586)
++||+++.||+|+++|++|+++|++|+.+.++...+ +++ +.+|.++||+|+++| ..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~----~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNG----FVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECC----EEEEcHHHHHHHHh
Confidence 589999999999999999999999999999975332 333 479999999998653 89999999999886
No 30
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.33 E-value=4.2e-12 Score=106.87 Aligned_cols=77 Identities=21% Similarity=0.443 Sum_probs=66.4
Q ss_pred CCCCCCCCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc-chhhhc-cCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 105 VPEDTTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV-LRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 105 ~p~~~~~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~-~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
+|++...+.|+||+.++||+|.++|.+|+.+||+|+.++++.. ...++. .++..+||+|+++| ..|+++++|.+
T Consensus 1 ~~~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g----~~igG~~~l~~ 76 (79)
T TIGR02190 1 APQARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGG----KLIGGSDELEA 76 (79)
T ss_pred CCCcCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECC----EEEcCHHHHHH
Confidence 4888899999999999999999999999999999999999642 223343 57899999999975 99999999999
Q ss_pred HHH
Q psy2688 183 CLA 185 (586)
Q Consensus 183 yLa 185 (586)
||+
T Consensus 77 ~l~ 79 (79)
T TIGR02190 77 YLA 79 (79)
T ss_pred HhC
Confidence 873
No 31
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.32 E-value=4.8e-12 Score=103.07 Aligned_cols=69 Identities=26% Similarity=0.437 Sum_probs=59.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
|+||+.+.||+|++++++|+++|++|+.+.++.... +++ +.+|.++||+|+++| ..+.||.+|++||++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~----~~l~es~aI~~yL~~ 71 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRD----LVLYESRIIMEYLDE 71 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECC----EEEEcHHHHHHHHHh
Confidence 579999999999999999999999999999985433 333 479999999998643 899999999998864
No 32
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.29 E-value=6.4e-12 Score=101.90 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=57.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhh-hccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQ-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||+++.||+|+|+|++|.++|++|+.+.++... .++ .+.+|.++||+|++++ | ..+.||.+|++||
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~--~-~~l~es~aI~~yL 73 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDD--G-TVITESVAICRYL 73 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCC--C-CEEecHHHHHHHh
Confidence 58999999999999999999999999999997532 223 3479999999999753 3 8999999999976
No 33
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.28 E-value=8e-12 Score=103.81 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=57.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||+++.||+|+++|++|.++|++|+.+.++.... +++ ++||.++||+|+++| ..++||.+|++||
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g----~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGD----NIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECC----EEEEcHHHHHHHh
Confidence 479999999999999999999999999999975322 223 479999999998643 9999999999977
No 34
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.28 E-value=8.6e-12 Score=102.13 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=58.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 115 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 115 ~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
+||++++||+|+|++++|+++|++|+.+.++...+ +++ +.||.++||+|++++ | ..+.||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~--g-~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGN--G-TVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECC--C-cEEecHHHHHHhh
Confidence 69999999999999999999999999999986443 334 479999999999752 3 8999999999975
No 35
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.26 E-value=1.4e-11 Score=105.73 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=62.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 109 TTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 109 ~~~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
..+.+++||+.+.||+|++++++|.++|++|+.+.++.... +++ +.+|.++||+|++++ | ..+.||.+|++||
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~--g-~~l~eS~aI~~yL 88 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDE--G-KVVYESLIICEYL 88 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECC--C-CEEECHHHHHHhh
Confidence 45678999999999999999999999999999999986443 333 479999999999862 3 8999999999976
No 36
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.26 E-value=1.6e-11 Score=101.01 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=58.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCC-ceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSY-KKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~-gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
|+||+++.||+|+|+|++|+++|++|+.+.++...+ .++ +.+|. ++||+|+++| ..++||.+|++||++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~----~~l~eS~aI~~yL~~ 72 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNG----KPICESLIIVEYIDE 72 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECC----EEeehHHHHHHHHHh
Confidence 579999999999999999999999999998886433 233 46895 9999998643 899999999998864
No 37
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.26 E-value=1.3e-11 Score=100.20 Aligned_cols=67 Identities=27% Similarity=0.528 Sum_probs=57.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||+++.||+|+++|++|.++|++|+.+.++... .+++ +.+|.++||+|+++| ..+.||.+|++||
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~----~~i~es~aI~~yl 72 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDG----RVLAESNAILVYL 72 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECC----EEEEcHHHHHHHh
Confidence 58999999999999999999999999999997532 1233 479999999999753 8999999999987
No 38
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.24 E-value=2.9e-11 Score=100.33 Aligned_cols=65 Identities=34% Similarity=0.599 Sum_probs=57.2
Q ss_pred cEEEEEcC-------CChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHH
Q psy2688 113 KITLFQYP-------TCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLA 185 (586)
Q Consensus 113 ~I~LY~~~-------~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLa 185 (586)
+++||+++ .||+|+|++++|+++|++|+.+.++.. ..+|.++||+|+++| ..++||.+|++||+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----~~~p~g~vPvl~~~g----~~l~eS~~I~~yL~ 71 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----KRSPKGKLPFIELNG----EKIADSELIIDHLE 71 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----cCCCCCCCCEEEECC----EEEcCHHHHHHHHH
Confidence 47899997 579999999999999999999888752 578999999999753 89999999999886
Q ss_pred h
Q psy2688 186 S 186 (586)
Q Consensus 186 e 186 (586)
+
T Consensus 72 ~ 72 (75)
T cd03080 72 E 72 (75)
T ss_pred H
Confidence 5
No 39
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.21 E-value=4.3e-11 Score=98.54 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=58.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
++||+.+.||+|+++|++|.++|++|+.+.++... .+.+ +.+|.++||+|+++| ..++||.+|++||++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g----~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGD----LKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECC----EEEEcHHHHHHHHhh
Confidence 78999999999999999999999999999887532 2233 379999999998643 899999999998863
No 40
>KOG1695|consensus
Probab=99.21 E-value=5e-10 Score=111.24 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=62.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc-hhhhcc-CCCceeeEEEEccCCCcEEecChHHHHHHHHhh
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL-RQQIKW-SSYKKVPILLVKVPNGYQQMNDSSMIVSCLASY 187 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~-~~~l~~-sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaey 187 (586)
+..+|+++.....|..+|++|...|++||.+.+.... ...++. .|.+++|+|.+|| ..|.+|.||++||++.
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg----~~i~QS~AI~RyLArk 75 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDG----KKLVQSRAILRYLARK 75 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECC----EeeccHHHHHHHHHHH
Confidence 3578999999999999999999999999999997654 455553 6999999999975 9999999999999864
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.20 E-value=3.9e-11 Score=98.26 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=58.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchh--hh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ--QI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLA 185 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~--~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLa 185 (586)
++||+++.|++|+++|++|+++|++|+.+.++..... ++ +.+|.++||+|+++| ..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~----~~l~es~aI~~yL~ 71 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDG----KKLTQSNAILRYLA 71 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECC----EEEEecHHHHHHhh
Confidence 4799999999999999999999999999999864322 23 479999999998653 89999999999885
No 42
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.20 E-value=5.1e-11 Score=93.36 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=57.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchh---hhccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ---QIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~---~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||++++||+|+++|++|+++|++|+.+.++..... -.+.+|.+++|+|+++| ..++||.+|++||
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~----~~~~es~~I~~yl 70 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGG----LVLTESLAILEYL 70 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECC----EEEEcHHHHHHHh
Confidence 4799999999999999999999999999999753322 13368999999999864 8999999999987
No 43
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.19 E-value=7e-11 Score=103.20 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecccchh-h-hccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 120 PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ-Q-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 120 ~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~-~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
..||||+++|++|.+|||+|+.+.+|+...+ . ++.||.++||+|.++| ..|+||.+|++||.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~----~~i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNG----EVKTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECC----EEecCHHHHHHHHHH
Confidence 5799999999999999999999999875543 3 3479999999999653 999999999887653
No 44
>KOG3029|consensus
Probab=99.19 E-value=1e-11 Score=126.25 Aligned_cols=85 Identities=46% Similarity=0.792 Sum_probs=62.3
Q ss_pred ccCCceee--eeeceeeeeeeeEEEEeecCchhhhhhccccccccccCCCceeeeeeecccCCccccccccccccccccc
Q psy2688 459 FFGNPIVI--GLGLGVGSALGYAYYTNVSLEPVFNEMANTQPVLESFPEGIKVSRKVVVPEDTTGLKINGKTMNKIIIPI 536 (586)
Q Consensus 459 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (586)
+-|.|.+. |+..|-+.|.+|..|.++.+.. ...|+.+-+ . +.
T Consensus 41 ~~G~~kl~~~~a~~~~~ag~~~~~~ar~~~~~-~~lhae~~~------~------~l----------------------- 84 (370)
T KOG3029|consen 41 KNGTPKLAVLGATAGGAAGSVYTMYARVTDGS-QKLHAETKA------T------RL----------------------- 84 (370)
T ss_pred cCCCcchhhhhhhhccccceeEeeHHHhhcch-HHHHHHHHH------h------hc-----------------------
Confidence 35666654 5566677778888888887532 222322221 0 11
Q ss_pred ccccCCCCCCCCeEEEEccCCChhHHHHHHHHHHcCCceEEEEecCCCCC
Q psy2688 537 MWVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ 586 (586)
Q Consensus 537 ~~~~~~~~~~~~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~~r~ 586 (586)
|.+..++++|++++||||+|||+|||++||+|++|||||.+||
T Consensus 85 -------d~s~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~ 127 (370)
T KOG3029|consen 85 -------DGSPLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQ 127 (370)
T ss_pred -------CCCCceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhh
Confidence 2223689999999999999999999999999999999999986
No 45
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.17 E-value=7.4e-11 Score=97.49 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=59.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
++||+++.|++|+++|++|.++|++|+.+.++.... +++ ..+|.++||+|+++| ..++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~----~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGD----LTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECC----EEEEcHHHHHHHHhc
Confidence 689999999999999999999999999999975322 233 379999999998653 899999999998863
No 46
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.16 E-value=9.7e-11 Score=96.85 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=58.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
++||+.+.||+|++++++|+++|++|+.+.++.... +++ +.+|.++||+|+++| ..++||.+|++||++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~----~~l~eS~aI~~Yl~~ 74 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGD----FTLAESVAILRYLAR 74 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECC----EEEEcHHHHHHHHHh
Confidence 479999999999999999999999999999975322 233 379999999998643 899999999998864
No 47
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.16 E-value=1.7e-10 Score=105.04 Aligned_cols=119 Identities=23% Similarity=0.420 Sum_probs=79.2
Q ss_pred HHHHHHHHhhchhccccccccchHHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHh--hhhcccccccccchhhh
Q psy2688 242 RKWRKWADQVLVHTLSPNVYRTKEEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAY--AFVKNLDTVGEWDKHFS 319 (586)
Q Consensus 242 ~~W~~waD~~L~~~i~p~vyr~~~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~e~~g~~~~~~p 319 (586)
+....|+|..++..+.+.+.+... ..++|.+++||+..| .|++++|++...
T Consensus 3 ~~~~~w~~~~l~~~~~~l~~~~~~----------------------~~~~~~~~~~F~~~R~~~~g~~le~~~~~----- 55 (124)
T cd03202 3 RFIERWSNTTLVPGLFPLIVPDIH----------------------DLLDPPDQAYFRQSREKRFGRSLEEVAAG----- 55 (124)
T ss_pred HHHHHHHHHHHhhhhhhhhHhhHH----------------------hhCChhhHHHHHHHHHHHhCCCHHHHCcc-----
Confidence 456789999988876665543321 235678889998875 556544433210
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccc
Q psy2688 320 KWERLLMVYVGAYAMYYISKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEA 399 (586)
Q Consensus 320 ~~er~l~~~~ga~~m~~i~k~lkk~~~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~ 399 (586)
- +...+.+.+.+..+.+.|. +++|++||+||+||+++++.+.++.....
T Consensus 56 -~---------------------------~~~~~~~~~~l~~l~~~L~---~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~ 104 (124)
T cd03202 56 -R---------------------------EAALANFRAALEPLRATLK---GQPFLGGAAPNYADYIVFGGFQWARIVSP 104 (124)
T ss_pred -h---------------------------HHHHHHHHHHHHHHHHHHc---CCCccCCCCCchhHHHHHHHHHHHHHcCc
Confidence 0 1112223333444444555 68999999999999999999999987533
Q ss_pred cccCCCCCCHHHHHHHHhh
Q psy2688 400 FKDLMAKSKIKPWYERMRT 418 (586)
Q Consensus 400 ~~dl~~~P~L~aW~eRmke 418 (586)
...+.++|+|.+|++||.+
T Consensus 105 ~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 105 FPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred ccccccCChHHHHHHHHhc
Confidence 3323468999999999986
No 48
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.15 E-value=8.7e-11 Score=96.26 Aligned_cols=68 Identities=28% Similarity=0.428 Sum_probs=57.9
Q ss_pred EEEEEcCCChhHHHHHHHHHh--cCCCeEEEEecccc-hhh-hccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDY--YGVSYDIVEVNAVL-RQQ-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~e--kGI~YE~v~Vd~~~-~~~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||+.+.||+|+++|++|.+ +|++|+.+.++... .++ .+.+|.++||+|++++ | ..+.||.+|++||
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~--g-~~l~es~aI~~yL 72 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDD--G-EALFDSRVICEYL 72 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECC--C-CEEECHHHHHhhh
Confidence 489999999999999999999 89999999998543 233 3479999999998643 3 8999999999976
No 49
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.15 E-value=1.2e-10 Score=97.44 Aligned_cols=72 Identities=25% Similarity=0.343 Sum_probs=58.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+++||+.+. |+|++++++|+++||+|+.+.++... .+++ +.+|.++||+|++++ +++..|+||.+|++||++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~-~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHN-GTPLTVFESGAILLYLAE 77 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCC-CCceEEEcHHHHHHHHHH
Confidence 479999986 99999999999999999999997432 2333 479999999998751 013899999999998864
No 50
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.14 E-value=1.5e-10 Score=94.91 Aligned_cols=64 Identities=28% Similarity=0.494 Sum_probs=55.5
Q ss_pred EEEEEcC-------CChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYP-------TCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~-------~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+.||+++ .||+|++++++|+++||+|+.+.++.. ..+|.++||+|.++| ..+.||.+|++||++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~-----~~~p~g~vP~l~~~g----~~l~es~~I~~yL~~ 71 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP-----WRSPTGKLPFLELNG----EKIADSEKIIEYLKK 71 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc-----ccCCCcccCEEEECC----EEEcCHHHHHHHHhh
Confidence 3577775 999999999999999999999998752 268999999999764 899999999998864
No 51
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.13 E-value=1e-10 Score=96.86 Aligned_cols=69 Identities=28% Similarity=0.344 Sum_probs=58.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc---hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 115 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL---RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 115 ~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~---~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+||+++.||+|+++|++|+++|++|+.+.++... .+++ +.||.++||+|++++ | ..+.||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~--g-~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGAD--G-FCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCC--C-CEEeeHHHHHHHHhh
Confidence 6999999999999999999999999999998632 2333 479999999999752 3 899999999998863
No 52
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.13 E-value=1.2e-10 Score=95.66 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=57.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hh-hccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQ-IKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~-l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||+.++||+|+++|++|.++|++|+.+.++...+ ++ .+.+|.++||+|.++| ..|+||.+|++||
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~----~~l~eS~aI~~YL 72 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGD----FVLWESNAILRYL 72 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECC----EEEECHHHHHHHh
Confidence 479999999999999999999999999998874322 23 3479999999998653 8999999999987
No 53
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.12 E-value=1.6e-10 Score=97.62 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecccchh----hhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 120 PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ----QIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 120 ~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~----~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+.||+|+|+|++|.++||+|+.+.++....+ .++.+|.++||+|+++ +| ..++||.+|++||++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~--~~-~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDG--SG-EVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEEC--CC-CEEeCHHHHHHHHHH
Confidence 6899999999999999999999998754322 2356999999999875 13 899999999998764
No 54
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.11 E-value=2.1e-10 Score=94.33 Aligned_cols=68 Identities=22% Similarity=0.535 Sum_probs=58.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc-hhhhc-cCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL-RQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~-~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
+|+||+.++||+|.++|.+|+.+|++|+.++++... ...+. .++..+||+|+++| ..++++.+|.+||
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g----~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDG----ELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECC----EEEeCHHHHHHHh
Confidence 589999999999999999999999999999996432 23333 47899999999975 8999999998876
No 55
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.11 E-value=1.9e-10 Score=93.48 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=57.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
++||++..||+|+++|++|.++|++|+.+.++... .+++ +.+|.++||+|++++ ..+.||.||++||
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~----~~l~es~aI~~yL 72 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDG----LVLTQSLAIIEYL 72 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECC----EEEEcHHHHHHHh
Confidence 47999999999999999999999999999997532 2233 369999999998653 8999999999976
No 56
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.2e-10 Score=106.02 Aligned_cols=70 Identities=26% Similarity=0.478 Sum_probs=59.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEec-ccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN-AVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd-~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
|+||-|..||||.|+|+....+|||+|.+.+. .......++-|.++||+|+-++ | ..+.||.+|++|+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Ked--g-~~m~ESlDIV~y~d~ 71 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKED--G-RAMPESLDIVHYVDE 71 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccc--c-ccchhhhHHHHHHHH
Confidence 57999999999999999999999999998884 2233445678999999999763 5 999999999998864
No 57
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.03 E-value=6.5e-10 Score=92.01 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=56.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
++||+++.| +|+++|++|.++|++|+.+.++... .+++ +.||.++||+|++++ | ..++||.+|++||++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~--g-~~l~eS~aI~~yL~~ 74 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDD--G-EVLTESAAILQYLAD 74 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECC--C-cEEEcHHHHHHHHHH
Confidence 479999876 5899999999999999999987543 2333 479999999999752 3 899999999998864
No 58
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.03 E-value=4.8e-10 Score=92.20 Aligned_cols=63 Identities=29% Similarity=0.412 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEecc----cc-hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 121 TCPFCCKVRAFLDYYGVSYDIVEVNA----VL-RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 121 ~cPfC~KVR~~L~ekGI~YE~v~Vd~----~~-~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.||||+|++++|+++||+|+...+.. .. .+.+ +.||.++||+|++++ | ++++||.+|++||++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~--g-~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPD--G-TVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETT--T-EEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECC--C-CEeeCHHHHHHHHhc
Confidence 49999999999999999999988832 11 1333 379999999999852 4 899999999998864
No 59
>KOG1422|consensus
Probab=98.98 E-value=8.1e-09 Score=101.87 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecccchh-hh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHhh
Q psy2688 120 PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQ-QI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASY 187 (586)
Q Consensus 120 ~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~-~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaey 187 (586)
.-||||+++-+.|..+|++|....||....+ .+ .++|.+++|+|..|+ ..+.||..|.+.|.+.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~----~~~tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE----KWVTDSDKIEEFLEEK 84 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCC----ceeccHHHHHHHHHHh
Confidence 5799999999999999999999999976553 44 479999999999875 9999999998866543
No 60
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.96 E-value=2.1e-09 Score=88.09 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=56.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc----hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL----RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~----~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
++||+++. ++|+++|++|.++|++|+.+.++... .+++ +.+|.++||+|+++| ..++||.+|++||++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g----~~l~es~aI~~yL~~ 73 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGD----LVLTESAAIILYLAE 73 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECC----EEEEcHHHHHHHHHH
Confidence 47998886 68999999999999999999997531 2333 479999999998643 899999999998864
No 61
>PRK10638 glutaredoxin 3; Provisional
Probab=98.93 E-value=2.5e-09 Score=90.61 Aligned_cols=67 Identities=22% Similarity=0.553 Sum_probs=57.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
.|+||+.++||+|.++|.+|+++|++|++++++.. ..+++. .+|..+||+|+++| ..|++.+++..+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g----~~igG~~~~~~~ 72 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDA----QHIGGCDDLYAL 72 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECC----EEEeCHHHHHHH
Confidence 59999999999999999999999999999999643 234443 68999999999865 999999999764
No 62
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=98.90 E-value=5e-09 Score=88.17 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=56.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-hhhc---cCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-QQIK---WSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-~~l~---~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.+||+++.++.|+++|++|.++|++||.+.++.... .+.. ..+.++||+|++|| ..|+||.||++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g----~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDG----MKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECC----EEEeeHHHHHHHHHH
Confidence 479999999999999999999999999998874221 1121 24689999999653 999999999999875
No 63
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.90 E-value=3.7e-09 Score=87.25 Aligned_cols=66 Identities=18% Similarity=0.386 Sum_probs=56.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecc--cchhhhc-cCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
.|+||+.++||+|.+++.+|+++||+|+.++++. ...+++. .+|..+||+|+++| ..|++-+++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~----~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNE----KLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECC----EEEeCHHHHHh
Confidence 5899999999999999999999999999999953 3344554 68889999999975 99999888854
No 64
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.8e-09 Score=89.27 Aligned_cols=69 Identities=20% Similarity=0.490 Sum_probs=56.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hhhc-cCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
+.+++|+.++||||.+++.+|+.+|++|+++.++.... ..++ .+|..+||+|++++ +.+++...+.++.
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~----~~igg~~d~~~~~ 74 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG----KHVGGCDDLDALE 74 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC----EEEeCcccHHHHH
Confidence 36899999999999999999999999999999974332 2233 35899999999975 8998877776543
No 65
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.88 E-value=5e-09 Score=88.96 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=56.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-----hh-hc-----cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 115 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-----QQ-IK-----WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 115 ~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-----~~-l~-----~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
+||++..++.|+++|++|.++||+||.+.++...+ ++ .. ..|.++||+|++|| ..++||.||++|
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g----~~l~ES~AIl~Y 77 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGD----VKLTQSNAILRY 77 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECC----EEEeehHHHHHH
Confidence 68899999999999999999999999999985331 22 21 12999999998653 999999999999
Q ss_pred HHh
Q psy2688 184 LAS 186 (586)
Q Consensus 184 Lae 186 (586)
|++
T Consensus 78 La~ 80 (82)
T cd03075 78 IAR 80 (82)
T ss_pred Hhh
Confidence 874
No 66
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.88 E-value=4.7e-09 Score=87.68 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=54.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch----hhh-ccCCC-ceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR----QQI-KWSSY-KKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~----~~l-~~sp~-gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
.+++|+.++ .|.++|++|+++|++|+.+.++...+ +++ +.+|. ++||+|++++ +..++||.||++||++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~---~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGD---GFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETT---TEEEESHHHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECC---CCEEEcHHHHHHHhCC
Confidence 456666665 88999999999999999999986433 333 36999 9999999862 3999999999999874
No 67
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.86 E-value=8.2e-09 Score=87.71 Aligned_cols=73 Identities=16% Similarity=0.458 Sum_probs=60.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEeccc--chhhhc-cCC--CceeeEEEEccCCCcEEecChHHHH
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAV--LRQQIK-WSS--YKKVPILLVKVPNGYQQMNDSSMIV 181 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~--~~~~l~-~sp--~gkVPvL~idg~dG~~~I~eS~aIi 181 (586)
|.|++|+.++||+|.+++.+|++ .|++|+.++++.. ..+++. ..+ ..+||+|+++| +.+++.++|.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g----~~igg~~~~~ 76 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQ----KHIGGCTDFE 76 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECC----EEEcCHHHHH
Confidence 47999999999999999999999 8999999999642 233443 333 47999999975 9999999999
Q ss_pred HHHHhhh
Q psy2688 182 SCLASYL 188 (586)
Q Consensus 182 ~yLaeyL 188 (586)
+++.++|
T Consensus 77 ~~~~~~~ 83 (85)
T PRK11200 77 AYVKENL 83 (85)
T ss_pred HHHHHhc
Confidence 9887654
No 68
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.83 E-value=7.2e-09 Score=85.81 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=53.2
Q ss_pred EcCCChhHHHHHHHHHhcCCCeEEEEecccc---hhhh-ccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 118 QYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL---RQQI-KWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 118 ~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~---~~~l-~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
+...||+|++++++|.++|++|+.+.++... .+++ +.+|.++||+|+++| ..++||.+|++||
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g----~~l~eS~aI~~YL 72 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGG----IVVWDSLAICEYL 72 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECC----EEEEcHHHHHHHh
Confidence 3478999999999999999999999997532 2333 479999999998753 8999999999987
No 69
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.80 E-value=1.5e-08 Score=86.84 Aligned_cols=70 Identities=13% Similarity=0.427 Sum_probs=55.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccc--hhhhc-cCCC--ceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVL--RQQIK-WSSY--KKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~--~~~l~-~sp~--gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
|++|+.++||+|.+++.+|+.+ +++|+.++++... .+++. ..+. .+||+|+++| +.++++++|.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g----~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDE----KHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECC----EEecCHHHHHHH
Confidence 7899999999999999999998 5678888886322 33343 3443 7999999975 999999999998
Q ss_pred HHhh
Q psy2688 184 LASY 187 (586)
Q Consensus 184 Laey 187 (586)
+.++
T Consensus 78 ~~~~ 81 (86)
T TIGR02183 78 VKEN 81 (86)
T ss_pred HHhc
Confidence 7654
No 70
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.77 E-value=2.4e-08 Score=88.20 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc-chh----hhc-cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV-LRQ----QIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~-~~~----~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
...|++|+.++||||.+++.+|+.+|++|++++++.. ... .+. .++..+||+|+++| +.|++.+++.+.
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g----~~iGG~ddl~~l 81 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGG----KLVGGLENVMAL 81 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECC----EEEcCHHHHHHH
Confidence 4569999999999999999999999999999999732 212 232 57999999999975 999999999763
No 71
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.77 E-value=2e-08 Score=82.36 Aligned_cols=66 Identities=24% Similarity=0.613 Sum_probs=54.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCc-eeeEEEEccCCCcEEecChHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYK-KVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~g-kVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
|+||+.++||+|.+++.+|+.+||+|++++++.. ..+++. ..+.. +||+|+++| ..+++.+++.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g----~~igg~~~~~~~ 71 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD----VHIGGCDDLYAL 71 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC----EEEeChHHHHHH
Confidence 7899999999999999999999999999999642 233433 34555 999999975 999999999764
No 72
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.76 E-value=1.7e-08 Score=86.01 Aligned_cols=56 Identities=13% Similarity=0.508 Sum_probs=47.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecc--cchhhhccCCCceeeEEEEcc
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIKWSSYKKVPILLVKV 167 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~~sp~gkVPvL~idg 167 (586)
++|+||+.++||+|.++|.+|+++||+|++++++. .....+...|..+||+|++++
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 36999999999999999999999999999999963 223445557999999999864
No 73
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.74 E-value=3e-08 Score=78.85 Aligned_cols=66 Identities=21% Similarity=0.590 Sum_probs=56.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
.|+||+.++||+|++++.+|+.+|++|+.++++.. ..+.+. .+|..++|+++++| ..++++..|.+
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~----~~igg~~~~~~ 69 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFING----EFIGGYDDLKA 69 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECC----EEEecHHHHHH
Confidence 37899999999999999999999999999988532 334444 58899999999865 99999999865
No 74
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.71 E-value=3.5e-08 Score=82.26 Aligned_cols=67 Identities=22% Similarity=0.535 Sum_probs=56.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
|++|+.++||+|.+++.+|+++|++|+.++++.. ..+++. .++..+||+++++| ..+++.+++.++-
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g----~~igg~~~~~~~~ 70 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGD----VHVGGCDDLYALD 70 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECC----EEEcChHHHHHHH
Confidence 5899999999999999999999999999999632 334443 57899999999975 8999999997743
No 75
>PHA03050 glutaredoxin; Provisional
Probab=98.70 E-value=4.1e-08 Score=88.27 Aligned_cols=67 Identities=24% Similarity=0.487 Sum_probs=56.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCC---CeEEEEecc-cc----hhhhc-cCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGV---SYDIVEVNA-VL----RQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI---~YE~v~Vd~-~~----~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
..|++|+.++||||.+++.+|+++|+ +|+.++++. .. ..++. .++..+||+|+++| ++|++.+++.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g----~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK----TSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC----EEEeChHHHHH
Confidence 46999999999999999999999999 899999973 11 22333 58899999999975 99999999976
No 76
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.70 E-value=4.4e-08 Score=86.15 Aligned_cols=68 Identities=28% Similarity=0.511 Sum_probs=57.0
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCCeEEEEec--ccchhhhc-cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 112 LKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 112 ~~I~LY~~-----~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
..|.||.+ ++||||.+++.+|+.+|++|++++++ +....++. .++..+||+++++| ..|++.+++.+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g----~~iGG~ddl~~l 87 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKG----EFVGGCDIIMEM 87 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECC----EEEeChHHHHHH
Confidence 46999987 89999999999999999999999985 32334444 58889999999975 999999999763
No 77
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.67 E-value=1.2e-07 Score=82.83 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
..+..+.+.|+ +++|++|+++|+||+++++.+.++.... .++.++|+|.+|++||.+...
T Consensus 50 ~~l~~le~~l~---~~~~l~G~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~ 109 (114)
T cd03188 50 ARLAYLDAQLA---GGPYLLGDRFSVADAYLFVVLRWAPGVG--LDLSDWPNLAAYLARVAARPA 109 (114)
T ss_pred HHHHHHHHHhc---CCCeeeCCCcchHHHHHHHHHHHHhhcC--CChhhChHHHHHHHHHHhCHH
Confidence 33444555555 6789999999999999999998875433 134468999999999988643
No 78
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.66 E-value=4.4e-08 Score=80.82 Aligned_cols=54 Identities=17% Similarity=0.463 Sum_probs=46.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEecc--cchhhhccCCCceeeEEEEcc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIKWSSYKKVPILLVKV 167 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~~sp~gkVPvL~idg 167 (586)
|+||+.++||+|+++|.+|+++||+|+.++++. .....++..|..+||+|+++|
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECC
Confidence 589999999999999999999999999999963 334455556888999999965
No 79
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.65 E-value=3.8e-08 Score=78.14 Aligned_cols=54 Identities=31% Similarity=0.744 Sum_probs=46.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCceeeEEEEcc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~gkVPvL~idg 167 (586)
|++|+.++||+|.+++.+|+.+|++|+.++++.. ..++++ .++..++|++++||
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g 57 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDG 57 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETT
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECC
Confidence 6899999999999999999999999999999743 345554 46999999999975
No 80
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.62 E-value=1.1e-07 Score=82.24 Aligned_cols=68 Identities=25% Similarity=0.473 Sum_probs=56.9
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 112 LKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 112 ~~I~LY~~-----~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
..|.+|.+ ++||||.+++.+|+.+|++|+.++++.. ...++. .++..+||+|+++| ++|++.+.+.+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g----~~iGG~~~l~~l 83 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNG----ELVGGCDIVKEM 83 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECC----EEEeCHHHHHHH
Confidence 47999987 6999999999999999999999998532 233443 58899999999975 999999999774
No 81
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.60 E-value=9.2e-08 Score=82.97 Aligned_cols=66 Identities=35% Similarity=0.608 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhh
Q psy2688 349 EEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRT 418 (586)
Q Consensus 349 ~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke 418 (586)
+..++.+...+..+.+.|+.+ +++||+|++||+||+++|++|..+..+ .++ .++|+|.+|++||++
T Consensus 34 ~~~~~~~~~~l~~l~~~L~~~-~~~~l~G~~~T~AD~~v~~~l~~~~~~-~~~--~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 34 DFSREELPKALKILEKHLAER-GGDFLVGDKPTLADIAVFGFLASLRWA-DFP--KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-SSSSSSSSS--HHHHHHHHHHHHHHCC-HHT--TTCHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHcC-CCeeecCCCCCHHHHHHHHHHHHHhhc-ccc--cccHHHHHHHHhhcC
Confidence 344556666777788888743 334999999999999999999887755 222 357999999999975
No 82
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.60 E-value=8.8e-08 Score=80.77 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 120 PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 120 ~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
+.+++|.|++++|++.|++||.+.... . -..+|.|+||+|++|| .+|+||.+|+.||++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~--~--~~~~P~GkVP~L~~dg----~vI~eS~aIl~yL~~ 73 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN--A--EFMSPSGKVPFIRVGN----QIVSEFGPIVQFVEA 73 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC--c--cccCCCCcccEEEECC----EEEeCHHHHHHHHhc
Confidence 357899999999999999999884321 1 1256789999999754 899999999998863
No 83
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.8e-08 Score=83.12 Aligned_cols=34 Identities=32% Similarity=0.899 Sum_probs=32.1
Q ss_pred CeEEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
++|+||+.++||||.+||++|+++|++|++++|+
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~ 34 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVD 34 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEec
Confidence 3699999999999999999999999999999994
No 84
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.58 E-value=1.1e-07 Score=80.88 Aligned_cols=66 Identities=29% Similarity=0.433 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccC-CCCCCHHHHHHHHhhhh
Q psy2688 351 VRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDL-MAKSKIKPWYERMRTNV 420 (586)
Q Consensus 351 vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl-~~~P~L~aW~eRmke~~ 420 (586)
.+..+...+..+++.|. +++|++|+++|+||+++++.+.++...... .. .++|+|.+|++||.+.+
T Consensus 29 ~~~~~~~~l~~le~~l~---~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~-~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 29 ARAKVPRYLEVLEKRLK---GGPYLVGDKLTIADIALFPMLDWLERLGPD-FLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHH---TSSSSSBSS-CHHHHHHHHHHHHHHHHTTT-TTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHc---CCCeeeccCCchhHHHHHHHHHHHHHhCCC-cccccCHHHHHHHHHHHcCC
Confidence 33444555666777776 899999999999999999999999887642 23 57899999999998763
No 85
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.57 E-value=2.6e-07 Score=81.87 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTN 419 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~ 419 (586)
..++.+.+.|+ +++|++||++|+||++++..+.++..... .+..+|+|.+|++||.+.
T Consensus 61 ~~l~~le~~L~---~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~ 118 (119)
T cd03189 61 KHLDFLEDRLA---KKGYFVGDKLTAADIMMSFPLEAALARGP--LLEKYPNIAAYLERIEAR 118 (119)
T ss_pred HHHHHHHHHHc---cCCCCCCCCCCHHHHHHHHHHHHHHHcCc--ccccCchHHHHHHHHhcC
Confidence 33444455565 67999999999999999999988865432 355689999999999875
No 86
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.56 E-value=3.3e-07 Score=79.97 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccC-CCCCCHHHHHHHHhhhhhc
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDL-MAKSKIKPWYERMRTNVTN 422 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl-~~~P~L~aW~eRmke~~~~ 422 (586)
+.+..+.+.|. +++|++|+++|+||+++++.+.++...+. ++ ..+|++.+|+++|.+.+..
T Consensus 42 ~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~rpa~ 103 (107)
T cd03186 42 ESLLALAPVFA---HKPYFMSEEFSLVDCALAPLLWRLPALGI--ELPKQAKPLKDYMERVFARDSF 103 (107)
T ss_pred HHHHHHHHHHc---CCCcccCCCCcHHHHHHHHHHHHHHHcCC--CCcccchHHHHHHHHHHCCHHH
Confidence 33444445555 68999999999999999999866543331 22 3579999999999987643
No 87
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.55 E-value=2.3e-07 Score=74.33 Aligned_cols=67 Identities=21% Similarity=0.510 Sum_probs=52.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhh-ccCCCceeeEEEEccCCCcEEe--cChHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQI-KWSSYKKVPILLVKVPNGYQQM--NDSSMIVSC 183 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l-~~sp~gkVPvL~idg~dG~~~I--~eS~aIi~y 183 (586)
+|+||+.++||+|.+++.+|+++|++|+.++++.. ..+++ +.++..+||+|+++| +.+ .++.+|.++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~----~~~~g~~~~~i~~~ 72 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGH----KIIVGFDPEKLDQL 72 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECC----EEEeeCCHHHHHHH
Confidence 48999999999999999999999999999988642 22333 357889999999864 666 455555443
No 88
>PRK10824 glutaredoxin-4; Provisional
Probab=98.55 E-value=2e-07 Score=84.96 Aligned_cols=69 Identities=17% Similarity=0.405 Sum_probs=57.5
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCCeEEEEecc--cchhhhc-cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 112 LKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 112 ~~I~LY~~-----~~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
..|.+|.+ ++||||.+++.+|+.+|++|+.++++. ..+..+. .++..+||+|+++| ++|++.+.+.+.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G----~~IGG~ddl~~l 90 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDG----ELVGGCDIVIEM 90 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECC----EEEcChHHHHHH
Confidence 46899998 599999999999999999999998853 2233443 58999999999976 999999999774
Q ss_pred H
Q psy2688 184 L 184 (586)
Q Consensus 184 L 184 (586)
.
T Consensus 91 ~ 91 (115)
T PRK10824 91 Y 91 (115)
T ss_pred H
Confidence 3
No 89
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.54 E-value=9e-08 Score=81.60 Aligned_cols=34 Identities=18% Similarity=0.616 Sum_probs=32.3
Q ss_pred CeEEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
++|+||++++||||.++|++|+++||+|+++||+
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~ 34 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVD 34 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECC
Confidence 3799999999999999999999999999999994
No 90
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.53 E-value=3.3e-07 Score=76.13 Aligned_cols=69 Identities=16% Similarity=0.409 Sum_probs=57.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccch-----hhhc-cCCCceeeEEEEccCCCcEEecChHHHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLR-----QQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSCLA 185 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~-----~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLa 185 (586)
+|++|+.++||+|.+++.+|++.+++|+.++++.... ..+. .++..++|+++++| ..++++..|.++..
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g----~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGG----KFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECC----EEEcCHHHHHHHHH
Confidence 3789999999999999999999999999999874321 2232 57899999999875 89999999988653
No 91
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.51 E-value=4.7e-07 Score=80.86 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=44.5
Q ss_pred HHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccc---c--cCCCCCCHHHHHHHHhhhhh
Q psy2688 359 CNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAF---K--DLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 359 l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~---~--dl~~~P~L~aW~eRmke~~~ 421 (586)
+..+.+.|+ +++|++|+++|+||+++++.+.++...... . +..++|++.+|+++|.+...
T Consensus 44 l~~le~~L~---~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 108 (126)
T cd03185 44 LKVLEEELG---GKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEA 108 (126)
T ss_pred HHHHHHHhc---CCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccH
Confidence 344444555 679999999999999999999887543211 1 23457999999999998654
No 92
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.51 E-value=1.5e-07 Score=76.07 Aligned_cols=63 Identities=30% Similarity=0.504 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccccc-CCCCCCHHHHHHH
Q psy2688 350 EVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKD-LMAKSKIKPWYER 415 (586)
Q Consensus 350 ~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d-l~~~P~L~aW~eR 415 (586)
.+++.+...++.+.+.|. +++|++|++||+||+++++++.++.......+ ...+|+|.+|++|
T Consensus 6 ~~~~~~~~~l~~le~~L~---~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 6 RARAQLEAALDALEDHLA---DGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT---TSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---hCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 344455555666666666 67799999999999999999999987754212 3457999999997
No 93
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.51 E-value=1.5e-07 Score=79.17 Aligned_cols=37 Identities=27% Similarity=0.646 Sum_probs=33.9
Q ss_pred CCCeEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 546 TGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 546 ~~~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
..++|+||+.++||||.+||++|+++||+|++++|+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~ 42 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGN 42 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCC
Confidence 3457999999999999999999999999999999953
No 94
>PRK10638 glutaredoxin 3; Provisional
Probab=98.49 E-value=1.6e-07 Score=79.60 Aligned_cols=36 Identities=28% Similarity=0.741 Sum_probs=33.3
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
|.+|+||+.++||||.+||.+|+++||+|++++|+.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~ 36 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDG 36 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCC
Confidence 347999999999999999999999999999999954
No 95
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.48 E-value=3.4e-07 Score=82.19 Aligned_cols=58 Identities=16% Similarity=0.350 Sum_probs=42.9
Q ss_pred HHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccc-ccCCCCCCHHHHHHHHhhhhh
Q psy2688 361 QWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAF-KDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 361 ~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~-~dl~~~P~L~aW~eRmke~~~ 421 (586)
.+.+.|+ +++|++||++|+||+++++.+.++...... .++.++|+|.+|++||.+...
T Consensus 52 ~le~~L~---~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa 110 (115)
T cd03196 52 DLEARLQ---QHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPL 110 (115)
T ss_pred HHHHHHc---cCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChH
Confidence 3344555 679999999999999999988776533211 124568999999999998654
No 96
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.48 E-value=1.5e-07 Score=83.12 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=33.1
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
..+|+||+.++||||.++|++|+++||+|+++|||
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 46799999999999999999999999999999994
No 97
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.47 E-value=7.2e-07 Score=78.61 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccC-CCCCCHHHHHHHHhhhh
Q psy2688 355 LYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDL-MAKSKIKPWYERMRTNV 420 (586)
Q Consensus 355 L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl-~~~P~L~aW~eRmke~~ 420 (586)
+...+..+.+.|+ +++|++||++|+||+++++.+.++...+. ++ .++|+|.+|+++|.+..
T Consensus 54 l~~~l~~le~~L~---~~~~l~gd~~t~aDi~l~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p 115 (117)
T cd03182 54 AADFLAYLDTRLA---GSPYVAGDRFTIADITAFVGLDFAKVVKL--RVPEELTHLRAWYDRMAARP 115 (117)
T ss_pred HHHHHHHHHHHhc---CCCcccCCCCCHHHHHHHHHhHHHHhcCC--CCccccHHHHHHHHHHHhcc
Confidence 3334445555565 67899999999999999999998866442 33 36799999999998864
No 98
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.46 E-value=1.8e-07 Score=74.24 Aligned_cols=33 Identities=36% Similarity=0.947 Sum_probs=31.4
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
|+||+.++||+|.++|++|+++|++|+++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~ 33 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDE 33 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGG
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEccccc
Confidence 789999999999999999999999999999943
No 99
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.46 E-value=2.1e-07 Score=76.49 Aligned_cols=34 Identities=35% Similarity=0.869 Sum_probs=32.2
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+|+||+.++||||.+||++|+++||+|++++|+.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~ 35 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGK 35 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence 6999999999999999999999999999999953
No 100
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.43 E-value=7.5e-07 Score=76.71 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHh
Q psy2688 359 CNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMR 417 (586)
Q Consensus 359 l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmk 417 (586)
+..+...|+ +++|++|+++|+||+++++.+.++...+. +..++|++.+|++||+
T Consensus 52 l~~le~~L~---~~~~l~g~~~slaDi~~~~~~~~~~~~~~--~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 52 LAVLEAHLA---GRDFLVGDALTIADIALAAYTHVADEGGF--DLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHc---cCccccCCCCCHHHHHHHHHHHhccccCC--ChHhCccHHHHHHhhC
Confidence 344444554 67899999999999999999988765432 3456899999999984
No 101
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.43 E-value=7.5e-07 Score=74.07 Aligned_cols=68 Identities=19% Similarity=0.488 Sum_probs=55.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC--eEEEEecccc-hh----hhc-cCCCceeeEEEEccCCCcEEecChHHHHHHHH
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVS--YDIVEVNAVL-RQ----QIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVSCLA 185 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~--YE~v~Vd~~~-~~----~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLa 185 (586)
|++|+.++||+|.+++.+|+..+++ |+.++++... .. .+. .++..++|+++++| ..+++++.+.++..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g----~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFING----KFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECC----EEEcCHHHHHHHHH
Confidence 5789999999999999999999999 9999986432 22 232 47888999999975 99999999988653
No 102
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.40 E-value=1.3e-06 Score=81.21 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhc--cc----cccCCCCCCHHHHHHHHhhhhh
Q psy2688 358 ECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGC--EA----FKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 358 ~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~--~~----~~dl~~~P~L~aW~eRmke~~~ 421 (586)
.+..+.+.|. +++|++|+++|+||+++++.+.++... .. ...+.++|+|.+|++||.+...
T Consensus 45 ~l~~LE~~L~---~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~ 111 (142)
T cd03190 45 ALDRLEELLS---DRRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPG 111 (142)
T ss_pred HHHHHHHHHc---cCCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCch
Confidence 3444445555 679999999999999999988765321 10 1123468999999999998754
No 103
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.40 E-value=7.7e-07 Score=79.24 Aligned_cols=63 Identities=19% Similarity=0.409 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhhcc
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVTNH 423 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~~~ 423 (586)
+.+..+.+.|. +++|++|+++|+||+++++++.++.....+ ++..+|+|.+|++||.+.....
T Consensus 45 ~~l~~le~~L~---~~~~l~G~~~s~aDi~l~~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p~~~ 107 (118)
T cd03177 45 EALDFLETFLE---GSDYVAGDQLTIADLSLVATVSTLEALLPL-DLSKYPNVRAWLERLKALPPYE 107 (118)
T ss_pred HHHHHHHHHHc---cCCeeCCCCcCHHHHHHHHHHHHHHHhcCC-ChhhCchHHHHHHHHHcccchH
Confidence 33444445554 678999999999999999999888652212 2446899999999999986543
No 104
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.38 E-value=1.1e-06 Score=71.69 Aligned_cols=63 Identities=21% Similarity=0.419 Sum_probs=49.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc--hhhhc-cC-CCceeeEEEEccCCCcEEecChH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL--RQQIK-WS-SYKKVPILLVKVPNGYQQMNDSS 178 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~--~~~l~-~s-p~gkVPvL~idg~dG~~~I~eS~ 178 (586)
.|+||+.++||+|++++.+|+++|++|+.++++... ...+. .+ +..+||+|++++ | ..+.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~--g-~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFAD--G-SFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECC--C-eEecCCC
Confidence 378999999999999999999999999998886322 23332 45 899999998753 4 6766544
No 105
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.38 E-value=1e-06 Score=77.11 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 359 CNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 359 l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+..+.+.|+ +++|++|+++|+||+.+++.+.+....+. ....++|+|.+|+++|.+.+.
T Consensus 49 l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~p~ 107 (113)
T cd03178 49 YGVLDKRLA---GRDYLAGDEYSIADIAIFPWVRRLEWIGI-DDLDDFPNVKRWLDRIAARPA 107 (113)
T ss_pred HHHHHHHHc---cCCcccCCCCCeeeeeHHHHHHHHHhccc-cchhhchHHHHHHHHHhhCHH
Confidence 344444554 67999999999999999999988866542 124457999999999988754
No 106
>PHA03050 glutaredoxin; Provisional
Probab=98.37 E-value=3.7e-07 Score=82.11 Aligned_cols=35 Identities=34% Similarity=0.773 Sum_probs=32.8
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHcCC---ceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYYGV---SYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~gi---~y~~v~V~ 581 (586)
..+|+||+.++||||.+||++|+++|| +|+++||+
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~ 49 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIK 49 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 457999999999999999999999999 89999996
No 107
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.36 E-value=3.2e-06 Score=75.81 Aligned_cols=48 Identities=21% Similarity=0.454 Sum_probs=39.1
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhh
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTN 419 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~ 419 (586)
+++|++||++|+||+++++.+.+...... ..+..+|+|.+|++||.+.
T Consensus 64 ~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~ 111 (126)
T cd03183 64 DKPFLAGDEISIADLSAVCEIMQPEAAGY-DVFEGRPKLAAWRKRVKEA 111 (126)
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHhcCC-cccccCchHHHHHHHHHHh
Confidence 47899999999999999998877765432 2235689999999999994
No 108
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.36 E-value=2.8e-06 Score=75.74 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 359 CNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 359 l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+..+.+.|+.+ +++||+|+++|+||++++..+.++...+. ++..+|+|.+|++||.+...
T Consensus 53 l~~le~~L~~~-~~~~l~G~~~t~ADi~~~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~ 112 (121)
T cd03191 53 FAALEKLLAQT-AGKFCFGDEPTLADICLVPQVYNARRFGV--DLSPYPTIARINEACLELPA 112 (121)
T ss_pred HHHHHHHHHhc-CCCeecCCcCCHHHHHHHHHHHHHHHhCC--CcccCcHHHHHHHHHHhChh
Confidence 34444556521 34799999999999999999988765432 24568999999999998754
No 109
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.35 E-value=5.3e-07 Score=73.91 Aligned_cols=33 Identities=36% Similarity=1.008 Sum_probs=31.5
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
+|+||+.++||||.+||++|+++||+|++++|+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~ 33 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVD 33 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECC
Confidence 489999999999999999999999999999994
No 110
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1e-05 Score=83.09 Aligned_cols=206 Identities=18% Similarity=0.320 Sum_probs=129.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCC-eEEEE-ecc-----------c-ch---------hhhc---------cCCCc
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYYGVS-YDIVE-VNA-----------V-LR---------QQIK---------WSSYK 158 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ekGI~-YE~v~-Vd~-----------~-~~---------~~l~---------~sp~g 158 (586)
+....||-.-.||+..+.-++=+.||++ .-.+. +++ . .+ +.|. -+++-
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 3468899999999999999888888885 22222 221 1 00 0111 27899
Q ss_pred eeeEEEEccCCCcEEe-cChHHHHHHHHhhhccccccchhccccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccc
Q psy2688 159 KVPILLVKVPNGYQQM-NDSSMIVSCLASYLSDTSVQLEEVASYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKD 237 (586)
Q Consensus 159 kVPvL~idg~dG~~~I-~eS~aIi~yLaeyLee~~~~~~~~~~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~ 237 (586)
+||||.+.. -.+++ .||..|++.|..-+++... +...|||+ + -
T Consensus 129 TVPVLwDk~--~~tIVnNES~eIirm~N~aFde~~~---~~~dlyP~------~-------------------------L 172 (324)
T COG0435 129 TVPVLWDKK--TQTIVNNESAEIIRMFNSAFDEFGA---SAVDLYPE------A-------------------------L 172 (324)
T ss_pred eEEEEEecC--CCeeecCCcHHHHHHHHHHHHHHhh---hccccCCH------H-------------------------H
Confidence 999999754 22444 5899999999877776532 24557775 1 1
Q ss_pred hHHHHHHHHHHHhhchhccccccccchHHHhhhhhhhhhhhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchh
Q psy2688 238 IMDERKWRKWADQVLVHTLSPNVYRTKEEALQSFEWFSEEQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKH 317 (586)
Q Consensus 238 ~~e~~~W~~waD~~L~~~i~p~vyr~~~eal~~F~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~ 317 (586)
+.++..|..|+-.. +---+|+.- | .+++.+|
T Consensus 173 r~eId~~n~~Iy~~----vNNGVYk~G------F-------------------A~tq~aY-------------------- 203 (324)
T COG0435 173 RTEIDELNKWIYDT----VNNGVYKAG------F-------------------ATTQEAY-------------------- 203 (324)
T ss_pred HHHHHHHHhhhccc----ccCceeeec------c-------------------cchHHHH--------------------
Confidence 34566777776433 323356421 0 0011111
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhh-
Q psy2688 318 FSKWERLLMVYVGAYAMYYISKRLKKRHNLKEEVRESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEG- 396 (586)
Q Consensus 318 ~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~~vre~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~- 396 (586)
++.-..|.+.++.++..|+ ++.||+||++|-||+-+|..|..+..
T Consensus 204 -------------------------------eea~~~lF~~Ld~lE~~L~---~~ryl~Gd~lTEAD~RLftTlvRFD~V 249 (324)
T COG0435 204 -------------------------------EEAVKKLFEALDKLEQILS---ERRYLTGDQLTEADIRLFTTLVRFDPV 249 (324)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHhh---cCeeeccccchHhhhhhhheeEeecce
Confidence 1222356677777777777 78999999999999999998876642
Q ss_pred -cccc----ccCCCCCCHHHHHHHHhhhhhcccchhHHHHHhhhhhhh
Q psy2688 397 -CEAF----KDLMAKSKIKPWYERMRTNVTNHLGNEYVKHFATQKANV 439 (586)
Q Consensus 397 -~~~~----~dl~~~P~L~aW~eRmke~~~~~~G~~~~~~~~~~~~~~ 439 (586)
.+-| .-+.++|+|..|+..+.... |-.--..+..-|+-+
T Consensus 250 YvgHFKCN~~rI~dypnL~~yLr~LYq~p----g~~~T~df~hIK~hY 293 (324)
T COG0435 250 YVGHFKCNLRRIRDYPNLWGYLRDLYQLP----GFAETVDFDHIKLHY 293 (324)
T ss_pred EEeeeecccchhhcCchHHHHHHHHhcCc----ccccccchhHhhhhh
Confidence 2222 34667899999999888743 323333444445544
No 111
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.33 E-value=1.3e-06 Score=69.92 Aligned_cols=61 Identities=25% Similarity=0.694 Sum_probs=49.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhc-cCCCceeeEEEEccCCCcEEecCh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIK-WSSYKKVPILLVKVPNGYQQMNDS 177 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS 177 (586)
.+++|+.++||+|.+++.+|+++|++|+.+.++.. ..+++. .++.++||+|++++ ..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~----~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD----EHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC----EEEecC
Confidence 37899999999999999999999999999998742 223443 57899999999864 566553
No 112
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.32 E-value=6.8e-07 Score=73.69 Aligned_cols=33 Identities=27% Similarity=0.620 Sum_probs=31.7
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
+|+||+.++||+|.+||++|+++||+|+++||+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~ 34 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINID 34 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECC
Confidence 689999999999999999999999999999993
No 113
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.32 E-value=5.9e-07 Score=74.08 Aligned_cols=32 Identities=19% Similarity=0.547 Sum_probs=30.7
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
|+||+.++||+|.+||++|+++||+|+++||+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~ 32 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINID 32 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECC
Confidence 68999999999999999999999999999994
No 114
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.27 E-value=3.5e-06 Score=70.50 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHh
Q psy2688 120 PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLAS 186 (586)
Q Consensus 120 ~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLae 186 (586)
..||+|.|+.++|+..|++|+.+..+. ...+|.|++|+|++++ +.+.||..|++||.+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-----~~~sp~gkLP~l~~~~----~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-----PWRSPTGKLPALLTSG----TKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-----CCCCCCCccCEEEECC----EEecChHHHHHHHHH
Confidence 467999999999999999998875432 2347899999999764 999999999998853
No 115
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.26 E-value=3.7e-06 Score=70.65 Aligned_cols=56 Identities=23% Similarity=0.481 Sum_probs=42.2
Q ss_pred HHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccccc-CCCCCCHHHHHHHH
Q psy2688 358 ECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKD-LMAKSKIKPWYERM 416 (586)
Q Consensus 358 ~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d-l~~~P~L~aW~eRm 416 (586)
.+..+.+.|. +++|++|+++|+||+++++.+.++........ ...+|++.+|+++|
T Consensus 44 ~~~~l~~~L~---~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 44 ALAALEKLLA---GRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHc---cCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 3344444554 67899999999999999999999876543211 34579999999986
No 116
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.26 E-value=2.4e-06 Score=76.00 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccc-cCCCCCCHHHHHHHHhhhhh
Q psy2688 358 ECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFK-DLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 358 ~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~-dl~~~P~L~aW~eRmke~~~ 421 (586)
.+..+.+.|+ +++|++|+++|+||+++++.+.++....... .+..+|++.+|+++|.+...
T Consensus 48 ~l~~le~~l~---~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 109 (123)
T cd03181 48 VLGVLEERLL---KRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPI 109 (123)
T ss_pred HHHHHHHHHc---cCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHH
Confidence 3444445555 6789999999999999999998874432111 12357999999999987643
No 117
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.25 E-value=3e-06 Score=92.46 Aligned_cols=66 Identities=12% Similarity=0.439 Sum_probs=54.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccc-h-h---hh------ccCCCceeeEEEEccCCCcEEecChHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL-R-Q---QI------KWSSYKKVPILLVKVPNGYQQMNDSSMIV 181 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~-~-~---~l------~~sp~gkVPvL~idg~dG~~~I~eS~aIi 181 (586)
.|++|+.++||+|.+++.+|+.+||+|++++++... . + ++ ..++..+||+++++| ++|++-+++.
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~----~~igGf~~l~ 78 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGD----VHIGGYDNLM 78 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECC----EEEeCchHHH
Confidence 599999999999999999999999999999997221 1 1 11 126889999999975 8999988886
Q ss_pred H
Q psy2688 182 S 182 (586)
Q Consensus 182 ~ 182 (586)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 118
>KOG3027|consensus
Probab=98.25 E-value=2.4e-05 Score=77.51 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=50.8
Q ss_pred CCcEEEEEc--------CCChhHHHHHHHHHhcCCCeEEEEecccchhhhc-cCCCceeeEEEEccCCCcEEecChHHHH
Q psy2688 111 GLKITLFQY--------PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIV 181 (586)
Q Consensus 111 ~~~I~LY~~--------~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi 181 (586)
|.+.+||+- +--..|..|+.+|+.-++||.++.-+- .. +||.|+||.|.++. +++.|-.+|+
T Consensus 15 PedatL~qp~e~eQiLl~d~ascLAVqtfLrMcnLPf~v~~~~N-----aefmSP~G~vPllr~g~----~~~aef~pIV 85 (257)
T KOG3027|consen 15 PEDATLYQPYEAEQILLPDNASCLAVQTFLRMCNLPFNVRQRAN-----AEFMSPGGKVPLLRIGK----TLFAEFEPIV 85 (257)
T ss_pred CccchhcCcccccccccccchhHHHHHHHHHHcCCCceeeecCC-----ccccCCCCCCceeeecc----hhhhhhhHHH
Confidence 344556653 335678999999999999999875432 12 58999999999864 9999999999
Q ss_pred HHHH
Q psy2688 182 SCLA 185 (586)
Q Consensus 182 ~yLa 185 (586)
.++.
T Consensus 86 ~fVe 89 (257)
T KOG3027|consen 86 DFVE 89 (257)
T ss_pred HHHH
Confidence 9774
No 119
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.22 E-value=1.3e-06 Score=72.76 Aligned_cols=32 Identities=31% Similarity=0.892 Sum_probs=30.8
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
|+||+.++||+|.+||++|+++||+|++++|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~ 32 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVD 32 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 68999999999999999999999999999994
No 120
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.22 E-value=1.6e-06 Score=73.66 Aligned_cols=35 Identities=23% Similarity=0.726 Sum_probs=32.7
Q ss_pred CeEEEEccCCChhHHHHHHHHHH-----cCCceEEEEecC
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNA 582 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~-----~gi~y~~v~V~p 582 (586)
++|+||+.++||||.+||++|++ .||+|+++||+.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 47999999999999999999999 899999999953
No 121
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.19 E-value=3.6e-06 Score=74.02 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
..+..+.+.|+ +++|++|+++|+||+++++++.++........+.++|+|.+|+++|.+...
T Consensus 52 ~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 113 (118)
T cd03187 52 KVLDVYEARLS---KSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPA 113 (118)
T ss_pred HHHHHHHHHcc---cCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHH
Confidence 33444455555 679999999999999999998776532211123458999999999998654
No 122
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.19 E-value=1.1e-06 Score=80.64 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcc-CCCCeecCCCCChhhhhHHHHHHhhhhcc----cccc-CCCCCCHHHHHHHHh
Q psy2688 357 DECNQWVKTIEKR-ENGPFFGGQKPNLADLAVYGVLSSIEGCE----AFKD-LMAKSKIKPWYERMR 417 (586)
Q Consensus 357 d~l~~~l~aL~~~-~~~pFL~Gd~pTlAD~av~g~L~~l~~~~----~~~d-l~~~P~L~aW~eRmk 417 (586)
..+++.+++|+.. ++++||+||+||.||+++|+++.++.... .... +.++|||.+|++||.
T Consensus 60 ~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 60 EEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3344444444433 47899999999999999999998886441 1222 445799999999984
No 123
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.19 E-value=4.7e-06 Score=72.17 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhh
Q psy2688 354 SLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 354 ~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~ 420 (586)
.+...+..+.+.|+ +++|++|+++|+||+++++.+.+..... ..+.++|+|.+|++||.+.+
T Consensus 37 ~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p 98 (100)
T cd03206 37 RAHRLLRLLEEHLA---GRDWLAGDRPTIADVAVYPYVALAPEGG--VDLEDYPAIRRWLARIEALP 98 (100)
T ss_pred HHHHHHHHHHHHHc---cCCccCCCCCCHHHHHHHHHHHHHhccC--CChhhCcHHHHHHHHHHhCc
Confidence 33344445555565 6789999999999999999987754422 13446899999999998764
No 124
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.18 E-value=1.9e-06 Score=75.86 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=32.2
Q ss_pred CCeEEEEcc-----CCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 547 GLKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~-----~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
..+|+||+. ++||||.+||++|+++||+|+++||+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~ 50 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL 50 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC
Confidence 458999987 88999999999999999999999993
No 125
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.17 E-value=3e-06 Score=71.81 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcc--c--c-ccCCCCCCHHHHHHHHh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCE--A--F-KDLMAKSKIKPWYERMR 417 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~--~--~-~dl~~~P~L~aW~eRmk 417 (586)
+.+..+.+.|+ +++|++|++||+||+++++.+.++.... . . ..+.++|+|.+|++||.
T Consensus 26 ~~l~~le~~L~---~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 26 KDLKALSDLLG---DKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHhC---CCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 33444455565 6799999999999999999998876431 1 0 12345899999999983
No 126
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.15 E-value=6.5e-06 Score=71.29 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~ 420 (586)
..++.+.+.|. +++|++|+++|+||+++++++....... ....++|+|.+|+++|.+..
T Consensus 50 ~~l~~lE~~L~---~~~~l~g~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p 108 (110)
T cd03180 50 KLMAILDAQLA---GRPYLAGDRFTLADIPLGCSAYRWFELP--IERPPLPHLERWYARLRARP 108 (110)
T ss_pred HHHHHHHHHhC---CCCcccCCCCCHHHHHHHHHHHHHHHcc--cccccCchHHHHHHHHHhCC
Confidence 33444445555 6799999999999999998885333332 13456899999999998764
No 127
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.15 E-value=5.6e-06 Score=71.69 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 355 LYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 355 L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+...+..+.+.|+ +++|++|+++|+||++++..+.++...+ ...++|+|.+|++||.+...
T Consensus 35 ~~~~l~~le~~l~---~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~ 95 (103)
T cd03207 35 YDDVLAALEQALA---KGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPA 95 (103)
T ss_pred HHHHHHHHHHHHc---cCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHH
Confidence 3344455555665 6789999999999999999999986543 23467999999999988643
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.12 E-value=5.8e-06 Score=78.43 Aligned_cols=65 Identities=20% Similarity=0.399 Sum_probs=55.0
Q ss_pred EEEEEcC------CChhHHHHHHHHHhcCCCeEEEEecc--cchhhhc-cC----CCceeeEEEEccCCCcEEecChHHH
Q psy2688 114 ITLFQYP------TCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIK-WS----SYKKVPILLVKVPNGYQQMNDSSMI 180 (586)
Q Consensus 114 I~LY~~~------~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~-~s----p~gkVPvL~idg~dG~~~I~eS~aI 180 (586)
|+||+.+ +||+|.+||.+|+.+||+|++++++. ...++++ .. +..+||+|+++| .+|++.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G----~~IGG~del 77 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDG----RYLGGAEEV 77 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECC----EEEecHHHH
Confidence 7899998 99999999999999999999999963 3455554 22 358999999975 999999999
Q ss_pred HH
Q psy2688 181 VS 182 (586)
Q Consensus 181 i~ 182 (586)
.+
T Consensus 78 ~~ 79 (147)
T cd03031 78 LR 79 (147)
T ss_pred HH
Confidence 76
No 129
>KOG1752|consensus
Probab=98.12 E-value=9.3e-06 Score=72.87 Aligned_cols=69 Identities=19% Similarity=0.451 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc-chhhhc-----cCCCceeeEEEEccCCCcEEecChHHHHHH
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV-LRQQIK-----WSSYKKVPILLVKVPNGYQQMNDSSMIVSC 183 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~-~~~~l~-----~sp~gkVPvL~idg~dG~~~I~eS~aIi~y 183 (586)
...+.+|+..+||+|.+++.+|...|+++..+++|.. ...++. +++..+||.++++| +.|++.+.+.++
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~G----k~iGG~~dl~~l 87 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGG----KFIGGASDLMAL 87 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECC----EEEcCHHHHHHH
Confidence 3468999999999999999999999999999999743 233433 58889999999976 999999999773
No 130
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=98.11 E-value=5.6e-06 Score=74.67 Aligned_cols=66 Identities=24% Similarity=0.508 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccc----ccCCCCCCHHHHHHHHhhhhh
Q psy2688 355 LYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAF----KDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 355 L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~----~dl~~~P~L~aW~eRmke~~~ 421 (586)
+.+.+..+.+.|+.. +++|++|+++|+||+++++++.++...... ..+.++|+|.+|++||.+...
T Consensus 37 ~~~~l~~le~~L~~~-~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~ 106 (124)
T cd03184 37 LRSALENLEEELTKR-GTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPA 106 (124)
T ss_pred HHHHHHHHHHHHHhc-CCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChH
Confidence 334445555556521 479999999999999999998877654321 124457999999999988653
No 131
>KOG2903|consensus
Probab=98.09 E-value=2.7e-05 Score=79.47 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhc--ccc----ccCC-CCCCHHHHHHHHhhhhhcccc
Q psy2688 353 ESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGC--EAF----KDLM-AKSKIKPWYERMRTNVTNHLG 425 (586)
Q Consensus 353 e~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~--~~~----~dl~-~~P~L~aW~eRmke~~~~~~G 425 (586)
..|++.+++.++.|+++ .+.|+.|+++|-||+-+|..+..+... .-| ..+. ++|+|-.|..++ +.++.|
T Consensus 206 ~~lfe~LDr~E~vL~~~-~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~i---Y~~~~~ 281 (319)
T KOG2903|consen 206 NQLFEALDRCEDVLGKN-RKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNI---YWNIPG 281 (319)
T ss_pred HHHHHHHHHHHHHHhcc-cceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHH---Hhhccc
Confidence 35678888888888853 446999999999999999876554321 112 2344 579999998776 455667
Q ss_pred hhHHHHHhhhhhhhhh
Q psy2688 426 NEYVKHFATQKANVLR 441 (586)
Q Consensus 426 ~~~~~~~~~~~~~~~~ 441 (586)
......+.--|+.+-|
T Consensus 282 ~~~Ttd~~hIk~~Y~~ 297 (319)
T KOG2903|consen 282 FSSTTDFNHIKLHYYR 297 (319)
T ss_pred hhhccchhHHhhhhcc
Confidence 6777777777887743
No 132
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.09 E-value=3.3e-06 Score=72.39 Aligned_cols=32 Identities=16% Similarity=0.766 Sum_probs=29.6
Q ss_pred EEEEccCCChhHHHHHHHHHHc-----CCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V~ 581 (586)
|+||++++||||.+||++|+++ +++|+++||+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECC
Confidence 7899999999999999999998 5789999995
No 133
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.08 E-value=4.9e-06 Score=66.01 Aligned_cols=33 Identities=24% Similarity=0.824 Sum_probs=31.3
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
+|++|+.++||+|.+++.+|+++|++|+++||+
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~ 33 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDIL 33 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 489999999999999999999999999999994
No 134
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.08 E-value=3e-06 Score=76.24 Aligned_cols=31 Identities=32% Similarity=0.920 Sum_probs=30.2
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
|+||+.++||+|.+|+++|+++||+|+++|+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDI 31 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecc
Confidence 6899999999999999999999999999999
No 135
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.08 E-value=1.1e-05 Score=73.18 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=38.8
Q ss_pred CeecCCCCChhhhhHHHHHHhhhhcccccc---CCCCCCHHHHHHHHhhhh
Q psy2688 373 PFFGGQKPNLADLAVYGVLSSIEGCEAFKD---LMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 373 pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d---l~~~P~L~aW~eRmke~~ 420 (586)
+||+|+++|+||+++++.+.++........ ..++|+|.+|++||.++.
T Consensus 59 ~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aRp 109 (111)
T cd03204 59 LWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQRE 109 (111)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHcCC
Confidence 699999999999999999999875432111 235899999999998864
No 136
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.07 E-value=6e-06 Score=77.01 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcc-CCCCeecCCCCChhhhhHHHHHHhhhhcccc-----ccCCCCCCHHHHHHHHhhhh
Q psy2688 357 DECNQWVKTIEKR-ENGPFFGGQKPNLADLAVYGVLSSIEGCEAF-----KDLMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 357 d~l~~~l~aL~~~-~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~-----~dl~~~P~L~aW~eRmke~~ 420 (586)
..+.+.+++|++. ++++|++||+||++|+++++++..+.....- ..+.++|+|.+|++||.+.+
T Consensus 67 ~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~~~ 136 (137)
T cd03212 67 RDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILSLY 136 (137)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHHhc
Confidence 3333344444332 4789999999999999999999877542211 12456899999999998764
No 137
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.06 E-value=1.1e-05 Score=73.24 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~ 420 (586)
..+..+.+.|..+++++|++|+++|+||++++..+.++..... ..+..+|+|.+|++||.+.+
T Consensus 42 ~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p 104 (126)
T cd03210 42 EQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP-GCLDAFPLLKAFVERLSARP 104 (126)
T ss_pred HHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh-HhhhcChHHHHHHHHHHhCc
Confidence 3344455556521135899999999999999999988865322 12445799999999999874
No 138
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.06 E-value=9.2e-06 Score=75.94 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhcc-------------CCCCeecCCCCChhhhhHHHHHHhhhhcc----ccccCCCCCCHHHHH
Q psy2688 351 VRESLYDECNQWVKTIEKR-------------ENGPFFGGQKPNLADLAVYGVLSSIEGCE----AFKDLMAKSKIKPWY 413 (586)
Q Consensus 351 vre~L~d~l~~~l~aL~~~-------------~~~pFL~Gd~pTlAD~av~g~L~~l~~~~----~~~dl~~~P~L~aW~ 413 (586)
.+..+.+.+..+.+.|... .+++||+|+++|+||+++++.|.++.... .+.-+.++|+|.+|+
T Consensus 30 ~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~aw~ 109 (134)
T cd03198 30 LEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWRYL 109 (134)
T ss_pred HHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHHHH
Confidence 3344555556666666520 13789999999999999999988764321 121124679999999
Q ss_pred HHHhhhhh
Q psy2688 414 ERMRTNVT 421 (586)
Q Consensus 414 eRmke~~~ 421 (586)
+||.++..
T Consensus 110 ~ri~aRPs 117 (134)
T cd03198 110 KNAYQREE 117 (134)
T ss_pred HHHHCCHH
Confidence 99998754
No 139
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.05 E-value=1.1e-05 Score=72.41 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=44.7
Q ss_pred HHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 359 CNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 359 l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+..+.+.|+ +++|++|+++|+||+.+++.+.++..... ..+.++|+|.+|++||.+...
T Consensus 44 l~~le~~L~---~~~~l~G~~~T~aDi~l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~ 102 (121)
T cd03209 44 LKLFSDFLG---DRPWFAGDKITYVDFLLYEALDQHRIFEP-DCLDAFPNLKDFLERFEALPK 102 (121)
T ss_pred HHHHHHHhC---CCCCcCCCCccHHHHHHHHHHHHHHHhCc-cccccChHHHHHHHHHHHCHH
Confidence 334444454 67899999999999999999998875432 124457999999999988643
No 140
>PTZ00062 glutaredoxin; Provisional
Probab=98.03 E-value=1.3e-05 Score=79.98 Aligned_cols=67 Identities=30% Similarity=0.506 Sum_probs=56.1
Q ss_pred CcEEEEEc-----CCChhHHHHHHHHHhcCCCeEEEEecc--cchhhhc-cCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 112 LKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 112 ~~I~LY~~-----~~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
..|.||.+ +.||||.+++.+|+.+||+|++++++. ..++.+. .++..+||+|+++| ++|++.+.+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G----~~IGG~d~l~~ 187 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNG----ELIGGHDIIKE 187 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECC----EEEcChHHHHH
Confidence 46899988 699999999999999999999998852 2234443 58899999999976 99999998876
No 141
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.03 E-value=6.3e-06 Score=68.11 Aligned_cols=35 Identities=77% Similarity=1.492 Sum_probs=32.7
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
+|++|+...||||.||+.+|+++||+|+++++++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~ 35 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV 35 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch
Confidence 48999999999999999999999999999999764
No 142
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.00 E-value=5.1e-06 Score=73.50 Aligned_cols=31 Identities=29% Similarity=0.674 Sum_probs=30.2
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
|+||+.++||+|.+|+++|+++||+|+++||
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDY 31 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEee
Confidence 6899999999999999999999999999999
No 143
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.00 E-value=1.4e-05 Score=72.73 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhc-cc---cccCCCCCCHHHHHHHHhhhhhc
Q psy2688 353 ESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGC-EA---FKDLMAKSKIKPWYERMRTNVTN 422 (586)
Q Consensus 353 e~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~-~~---~~dl~~~P~L~aW~eRmke~~~~ 422 (586)
+.+.+.+..+.+.|.. +++|++||++|+||+++++.+..+... .. +....++|+|.+|++||.++..-
T Consensus 33 ~~l~~~l~~Le~~L~~--~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~ 104 (121)
T cd03201 33 QALLDELEALEDHLKE--NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESF 104 (121)
T ss_pred HHHHHHHHHHHHHHhc--CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchh
Confidence 3444555566666652 379999999999999999977666432 21 11124579999999999987643
No 144
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.99 E-value=7.9e-06 Score=70.64 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=32.1
Q ss_pred CCeEEEEcc-----CCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 547 GLKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~-----~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
..+|+||+. ++||||.+||++|+++||+|+++||+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~ 46 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL 46 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC
Confidence 358999988 69999999999999999999999993
No 145
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.95 E-value=1.1e-05 Score=67.01 Aligned_cols=34 Identities=26% Similarity=0.704 Sum_probs=31.8
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+|++|+.++||+|.+++++|++.+++|+.++|+.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~ 34 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQ 34 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4899999999999999999999999999999854
No 146
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.91 E-value=1.2e-05 Score=66.96 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=31.2
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
++||+.+.||||.||+.+|+++||+|++++|++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~ 34 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPK 34 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCC
Confidence 789999999999999999999999999999854
No 147
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=97.89 E-value=2.7e-05 Score=68.09 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=36.0
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhh
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTN 419 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~ 419 (586)
+++|++|+++|+||+++++.+.+.. . ....+|+|.+|++||+++
T Consensus 53 ~~~fl~Gd~~tiADi~l~~~l~~~~-~----~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 53 RSPWLVGSEFTVADIVSWCALLQTG-L----ASAAPANVQRWLKSCENL 96 (96)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHcc-c----ccccChHHHHHHHHHHhC
Confidence 6799999999999999999887641 1 223579999999999863
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.89 E-value=1.6e-05 Score=63.46 Aligned_cols=34 Identities=26% Similarity=0.747 Sum_probs=31.8
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+|++|+.++||+|.+++.+|+++|++|+++||+.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~ 34 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEK 34 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccC
Confidence 4899999999999999999999999999999954
No 149
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.85 E-value=2.1e-05 Score=64.13 Aligned_cols=34 Identities=26% Similarity=0.649 Sum_probs=31.7
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
.|+||..++||+|.+++.+|+++|++|+.+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~ 34 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEE 34 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcC
Confidence 4889999999999999999999999999999953
No 150
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=97.80 E-value=3.5e-05 Score=66.70 Aligned_cols=44 Identities=34% Similarity=0.432 Sum_probs=36.3
Q ss_pred CCeecCCCCChhhhhHHHHHHhhhhcccccc-CCCCCCHHHHHHHH
Q psy2688 372 GPFFGGQKPNLADLAVYGVLSSIEGCEAFKD-LMAKSKIKPWYERM 416 (586)
Q Consensus 372 ~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d-l~~~P~L~aW~eRm 416 (586)
++|++|+++|+||++++..+.++..... .. ...+|++.+|++||
T Consensus 60 ~~~~~G~~~s~aDi~l~~~~~~~~~~~~-~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 60 GGYLVGDKLTWADLVVFDVLDYLLYLDP-KLLLKKYPKLKALRERV 104 (104)
T ss_pred CCeeeCCCccHHHHHHHHHHHHHHhhCc-hhhHHhChhHHHHHHhC
Confidence 7899999999999999999988866542 12 34579999999985
No 151
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=97.80 E-value=4.9e-05 Score=68.64 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=37.2
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhh----ccccccC-CCCCCHHHHHHHHhhhh
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEG----CEAFKDL-MAKSKIKPWYERMRTNV 420 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~----~~~~~dl-~~~P~L~aW~eRmke~~ 420 (586)
+++|++| ++|+||+++++++..+.. ...+ ++ .++|+|.+|++||++..
T Consensus 51 ~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~-~~~~~~P~l~~W~~~~~~rp 103 (120)
T cd03203 51 DGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNY-DITEGRPNLAAWIEEMNKIE 103 (120)
T ss_pred CCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCc-cccccCcHHHHHHHHHhcch
Confidence 5799999 999999999999875532 1122 33 36799999999998874
No 152
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=97.80 E-value=5.9e-05 Score=69.98 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=40.5
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+++|++|+++|+||+.++..+.++..... ..+.++|+|.+|++||.+.+.
T Consensus 59 ~~~~l~G~~~T~ADi~l~~~l~~~~~~~~-~~l~~~P~l~~~~~rv~~~P~ 108 (137)
T cd03208 59 GQDFLVGNKLSRADIHLLEAILMVEELDP-SLLSDFPLLQAFKTRISNLPT 108 (137)
T ss_pred CCCeeeCCCCCHHHHHHHHHHHHHHHhch-hhhccChHHHHHHHHHHcCHH
Confidence 56899999999999999999998764332 124468999999999988753
No 153
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.79 E-value=2.2e-05 Score=65.21 Aligned_cols=33 Identities=30% Similarity=0.791 Sum_probs=30.7
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCc--eEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVS--YDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~--y~~v~V~p 582 (586)
|++|+.++||||.+++.+|++++++ |+.++|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~ 35 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQ 35 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeC
Confidence 6899999999999999999999999 99999854
No 154
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.75 E-value=6.1e-05 Score=67.60 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhh
Q psy2688 357 DECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVT 421 (586)
Q Consensus 357 d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~ 421 (586)
+.++..++.++ +++||+|| +|+||+.+++.+.++...+. ++ .|+|.+|++||.+.+.
T Consensus 51 ~~le~~l~~~~---~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~--~~--~P~l~~~~~rv~~rPs 107 (114)
T cd03194 51 AIWAECLARFQ---GGPFLFGD-FSIADAFFAPVVTRFRTYGL--PL--SPAAQAYVDALLAHPA 107 (114)
T ss_pred HHHHHHHHHcC---CCCCCCCC-CcHHHHHHHHHHHHHHHcCC--CC--CHHHHHHHHHHHCCHH
Confidence 33444444443 67899999 99999999999998865431 22 3999999999988643
No 155
>PRK10824 glutaredoxin-4; Provisional
Probab=97.71 E-value=3.8e-05 Score=70.11 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCeEEEEccC-----CChhHHHHHHHHHHcCCceEEEEec
Q psy2688 547 GLKITLFQYP-----TCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~-----~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
..+|+||+.. +||||.+||++|+.+|++|+++||+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~ 53 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL 53 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec
Confidence 4689999994 9999999999999999999999994
No 156
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.67 E-value=6e-05 Score=60.14 Aligned_cols=34 Identities=32% Similarity=0.900 Sum_probs=31.9
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+|++|+..+||+|.+++.+|+++|++|+.++++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~ 34 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE 34 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCC
Confidence 4899999999999999999999999999999964
No 157
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.62 E-value=7.9e-05 Score=60.87 Aligned_cols=33 Identities=24% Similarity=0.580 Sum_probs=30.9
Q ss_pred EEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 551 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
++|+..+||||.+++..|+++|++|+.++|+..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~ 34 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK 34 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 699999999999999999999999999999753
No 158
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.61 E-value=7.1e-05 Score=60.70 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=31.4
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
+++|+.++||+|.+++.+|+++|++|+.++|++.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~ 34 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD 34 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC
Confidence 4799999999999999999999999999998754
No 159
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.55 E-value=0.0002 Score=64.02 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=39.3
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhhhc
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNVTN 422 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~~~ 422 (586)
+++||+| ++|+||++++.++.|+...+. ++ . |++.+|++||.+.+.-
T Consensus 61 ~~~~l~G-~fSiAD~~l~~~~~~~~~~g~--~l-~-p~l~ay~~r~~~rPa~ 107 (114)
T cd03195 61 GAANLFG-EWCIADTDLALMLNRLVLNGD--PV-P-ERLRDYARRQWQRPSV 107 (114)
T ss_pred CCCcccC-CccHHHHHHHHHHHHHHHcCC--CC-C-HHHHHHHHHHHCCHHH
Confidence 5589999 599999999999999977653 34 3 9999999999998543
No 160
>KOG3028|consensus
Probab=97.53 E-value=0.0088 Score=62.91 Aligned_cols=214 Identities=19% Similarity=0.276 Sum_probs=120.4
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHHHhhhccccccchhcc
Q psy2688 120 PTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCLASYLSDTSVQLEEVA 199 (586)
Q Consensus 120 ~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yLaeyLee~~~~~~~~~ 199 (586)
..||-|-.+.++++..+-+.+.+..+- --.++.|++|+|..+. | +.+.+-..|+.+|..- .+.
T Consensus 15 tid~~sL~~l~y~kl~~~~l~v~~ssN-----~~~s~sg~LP~l~~~n--g-~~va~~~~iv~~L~k~-~~k-------- 77 (313)
T KOG3028|consen 15 TIDPDSLAALIYLKLAGAPLKVVVSSN-----PWRSPSGKLPYLITDN--G-TKVAGPVKIVQFLKKN-TKK-------- 77 (313)
T ss_pred CcChhHHHHHHHHHHhCCCceeEeecC-----CCCCCCCCCCeEEecC--C-ceeccHHHHHHHHHHh-ccc--------
Confidence 368999999999999995555443321 1247899999999863 5 8999999999988531 111
Q ss_pred ccCCCCCCCCCChhhHHHHHHHHHHhhhccccCccccchHHHHHHHHHHHhhchhcccccccc---chHHHhhhhhhhhh
Q psy2688 200 SYFPETEYRDDDGTVKKEIMNRYFLMLNDRMNGRTVKDIMDERKWRKWADQVLVHTLSPNVYR---TKEEALQSFEWFSE 276 (586)
Q Consensus 200 ~lYP~~~l~p~~~k~~~~i~n~~f~m~~~~~~~~~~~~~~e~~~W~~waD~~L~~~i~p~vyr---~~~eal~~F~wf~~ 276 (586)
|+- +.+-. ....+....|+.|+++++..++-..+|- ++.|.. =.|+++
T Consensus 78 --y~~----d~dl~---------------------~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~T--kk~yak 128 (313)
T KOG3028|consen 78 --YNL----DADLS---------------------AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVT--KKWYAK 128 (313)
T ss_pred --CCc----CccHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHh--HHHHHh
Confidence 332 11111 1234567889999998887765443331 122221 134443
Q ss_pred hhccCCccccchhhhhhHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHhhhhHHHHHHHHhhhhccchHHHHHHHH
Q psy2688 277 EQGRGQKHLDFHVIKTTQKLYLKRAYAFVKNLDTVGEWDKHFSKWERLLMVYVGAYAMYYISKRLKKRHNLKEEVRESLY 356 (586)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~g~~~~~~p~~er~l~~~~ga~~m~~i~k~lkk~~~l~~~vre~L~ 356 (586)
. -+-.+.++-| + ...|..+ +++.-..+.....+..++
T Consensus 129 ~-----l~fP~n~~~p-------------------~-------~l~~qAk------------~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 129 A-----LPFPLNYILP-------------------G-------KLQRQAK------------ERLQLTLGELTEREDQIY 165 (313)
T ss_pred c-----CCCchhhcch-------------------h-------hhHHHHH------------HHHHHHhCCchhhHHHHH
Confidence 1 0000111100 0 0011100 000000011111222333
Q ss_pred HHHHHHHHHHhcc-CCCCeecCCCCChhhhhHHHHHHhhhhcccc----c-cCCCCCCHHHHHHHHhhhhhc
Q psy2688 357 DECNQWVKTIEKR-ENGPFFGGQKPNLADLAVYGVLSSIEGCEAF----K-DLMAKSKIKPWYERMRTNVTN 422 (586)
Q Consensus 357 d~l~~~l~aL~~~-~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~----~-dl~~~P~L~aW~eRmke~~~~ 422 (586)
....+-+++|+.+ +..+|+.||+||--|..+|+++..+...+-- . -+..++||.++++++.+.+..
T Consensus 166 ~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~~f~ 237 (313)
T KOG3028|consen 166 KDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSLYFR 237 (313)
T ss_pred HHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3333444444443 5889999999999999999999995443221 1 122379999999999987643
No 161
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.51 E-value=9.5e-05 Score=60.19 Aligned_cols=33 Identities=24% Similarity=0.609 Sum_probs=30.5
Q ss_pred EEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 551 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
++|.+.+||||.|+|.+|.++|++|+.+.+++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~ 34 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQND 34 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC
Confidence 689999999999999999999999999988643
No 162
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.51 E-value=0.0001 Score=65.96 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=30.2
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
|+||+.++|+.|.+|+++|+++||+|+++|+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di 31 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDY 31 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 6899999999999999999999999999999
No 163
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=97.51 E-value=0.00013 Score=56.75 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=31.0
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
+++|+.+.||+|.+++.+|+.+||+|+.++++..
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 34 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLG 34 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3799999999999999999999999999999543
No 164
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.50 E-value=0.0005 Score=59.43 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCCChhhhhHHHHHHhhhhcccccc-CCCCCCHHHHHHHH
Q psy2688 353 ESLYDECNQWVKTIEKRENGPFFGGQKPNLADLAVYGVLSSIEGCEAFKD-LMAKSKIKPWYERM 416 (586)
Q Consensus 353 e~L~d~l~~~l~aL~~~~~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~d-l~~~P~L~aW~eRm 416 (586)
+.+...+..+.+.|. +++| +++|+||++++..+.+........+ ..++|+|.+|++||
T Consensus 40 ~~~~~~l~~le~~L~---~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 40 GKIERALDALEAELA---KLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHhhh---hCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 333333444444554 6788 9999999999999988864321112 34679999999986
No 165
>KOG1752|consensus
Probab=97.47 E-value=0.00013 Score=65.55 Aligned_cols=37 Identities=24% Similarity=0.645 Sum_probs=33.8
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
..+|+||+.++||||.++|.+|...|+.++++|+|..
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~ 49 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDED 49 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCC
Confidence 4579999999999999999999999999999999543
No 166
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.46 E-value=0.00014 Score=58.70 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=30.7
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|+.++||+|.+++.+|+++|++|+.++|+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~ 33 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDL 33 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeec
Confidence 479999999999999999999999999999864
No 167
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.45 E-value=0.00014 Score=66.12 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=31.0
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
+|+||+.+.|+.|.+|+++|+++||+|+++|+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 48999999999999999999999999999998
No 168
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.42 E-value=0.0003 Score=60.37 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=32.7
Q ss_pred CeEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
..+++|+...||||.+++.+|.++|++|+.++|+.
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~ 51 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININL 51 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCC
Confidence 46999999999999999999999999999999864
No 169
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.31 E-value=0.00025 Score=63.77 Aligned_cols=40 Identities=28% Similarity=0.766 Sum_probs=33.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhhc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK 153 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~ 153 (586)
|+||+.++||+|++++.+|+++||+|+.+++. +....++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~ 42 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELK 42 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHH
Confidence 58999999999999999999999999999984 44444443
No 170
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.25 E-value=0.00035 Score=64.90 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=34.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQI 152 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l 152 (586)
+|+||+.++||+|++++.+|+++||+|+.+++. +....++
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL 42 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEI 42 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHH
Confidence 389999999999999999999999999999984 4444444
No 171
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.23 E-value=0.00028 Score=56.68 Aligned_cols=33 Identities=24% Similarity=0.624 Sum_probs=29.9
Q ss_pred eEEEEccCCChhHHHHHHHHHHc-----CCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V~ 581 (586)
+|++|+.++||+|.+++.+|++. +++|.++|++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc
Confidence 68999999999999999999975 7999999984
No 172
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.20 E-value=0.00076 Score=54.12 Aligned_cols=53 Identities=19% Similarity=0.454 Sum_probs=40.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccchhhhc-cCCCceeeEEEEcc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg 167 (586)
++++|+.++||+|.+++.+|++. +++|..++++.. +++. ..+...+|+++++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i~~ 60 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVING 60 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEECC
Confidence 58899999999999999998865 677777766421 2222 35667899999975
No 173
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.19 E-value=0.00044 Score=56.28 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.8
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.||+|.+++.+|.++|++|+.++|+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~ 33 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNL 33 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecC
Confidence 479999999999999999999999999999864
No 174
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.19 E-value=0.00044 Score=61.13 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=30.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEec
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 145 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd 145 (586)
|+||+.++||+|++++.+|+++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999999984
No 175
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0012 Score=58.82 Aligned_cols=70 Identities=24% Similarity=0.477 Sum_probs=59.1
Q ss_pred CCcEEEEEc-----CCChhHHHHHHHHHhcC-CCeEEEEe--cccchhhhc-cCCCceeeEEEEccCCCcEEecChHHHH
Q psy2688 111 GLKITLFQY-----PTCPFCCKVRAFLDYYG-VSYDIVEV--NAVLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIV 181 (586)
Q Consensus 111 ~~~I~LY~~-----~~cPfC~KVR~~L~ekG-I~YE~v~V--d~~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi 181 (586)
...|.||-+ |-|.|+.++-.+|.+.| ++|..++| |+..++.++ .+...|.|+|.++| ..|++|+.|.
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G----EfvGG~DIv~ 89 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG----EFVGGCDIVR 89 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECC----EEeccHHHHH
Confidence 346889977 89999999999999999 78888888 555667776 68999999999976 9999999887
Q ss_pred HHH
Q psy2688 182 SCL 184 (586)
Q Consensus 182 ~yL 184 (586)
+..
T Consensus 90 Em~ 92 (105)
T COG0278 90 EMY 92 (105)
T ss_pred HHH
Confidence 754
No 176
>PTZ00062 glutaredoxin; Provisional
Probab=97.15 E-value=0.00048 Score=68.80 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=32.0
Q ss_pred CCeEEEEcc-----CCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 547 GLKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~-----~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
..+|.||+. ++||||.++|++|+++||+|+++||+
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~ 151 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF 151 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC
Confidence 457999988 69999999999999999999999994
No 177
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.12 E-value=0.00062 Score=61.50 Aligned_cols=40 Identities=18% Similarity=0.530 Sum_probs=33.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhh
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQI 152 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l 152 (586)
|+++|+.+.||+|++++.+|+++||+|+.+++. +.+..++
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el 42 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEEL 42 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHH
Confidence 389999999999999999999999999999884 3344444
No 178
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.06 E-value=0.00063 Score=54.88 Aligned_cols=33 Identities=36% Similarity=0.756 Sum_probs=30.8
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.||+|.+++.+|.++|++|++++|+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecC
Confidence 479999999999999999999999999999864
No 179
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.04 E-value=0.00066 Score=56.14 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=30.8
Q ss_pred EEccCCChhHHHHHHHHHHcCCceEEEEecCCC
Q psy2688 552 LFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVL 584 (586)
Q Consensus 552 lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~~ 584 (586)
+|....||||.|++.+|+++||+|+.++|++..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~ 33 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE 33 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc
Confidence 699999999999999999999999999997654
No 180
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.01 E-value=0.0013 Score=57.81 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=49.6
Q ss_pred EEEEEcCCC------hhHHHHHHHHHhcCCCeEEEEec--ccchhhhc-cC----CCceeeEEEEccCCCcEEecChHHH
Q psy2688 114 ITLFQYPTC------PFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK-WS----SYKKVPILLVKVPNGYQQMNDSSMI 180 (586)
Q Consensus 114 I~LY~~~~c------PfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~-~s----p~gkVPvL~idg~dG~~~I~eS~aI 180 (586)
|+||....+ -.|+.++.+|+.+||+|++++++ +..++++. .+ +..+||+|++++ .++++.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~----~~iGg~ddl 77 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGD----EYCGDYEAF 77 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECC----EEeeCHHHH
Confidence 567765333 35788999999999999999995 44445544 22 568999999975 999999998
Q ss_pred HH
Q psy2688 181 VS 182 (586)
Q Consensus 181 i~ 182 (586)
.+
T Consensus 78 ~~ 79 (92)
T cd03030 78 FE 79 (92)
T ss_pred HH
Confidence 66
No 181
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.99 E-value=0.001 Score=61.91 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=35.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhhc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK 153 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~ 153 (586)
||++|+.+.|+.|++++.+|+++||+|+.+++. +.+.+++.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~ 43 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELK 43 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHH
Confidence 489999999999999999999999999999984 54555554
No 182
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.97 E-value=0.001 Score=54.56 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=31.3
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
+++|....||+|.+++.+|.++|++|+.+++++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~ 34 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG 34 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc
Confidence 4799999999999999999999999999988754
No 183
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.95 E-value=0.0011 Score=61.83 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=35.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhhc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK 153 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~ 153 (586)
||++|+.+.|+.|++++.+|+++||+|+++++. +.+.+++.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~ 43 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEIL 43 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHH
Confidence 489999999999999999999999999999984 44445443
No 184
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.92 E-value=0.0011 Score=54.16 Aligned_cols=32 Identities=31% Similarity=0.662 Sum_probs=28.4
Q ss_pred EEEccC-------CChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 551 TLFQYP-------TCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 551 ~lY~~~-------~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
++|+.. .||||.+++.+|+.+||+|+.+++++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~ 40 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSN 40 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCC
Confidence 466666 99999999999999999999999864
No 185
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.86 E-value=0.0012 Score=59.77 Aligned_cols=39 Identities=26% Similarity=0.732 Sum_probs=33.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhh
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQI 152 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l 152 (586)
|+||+.++||+|++++.+|+++||+|+.+++. +.+..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el 41 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREEL 41 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHH
Confidence 57999999999999999999999999999884 3344444
No 186
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.72 E-value=0.002 Score=57.70 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=34.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhhc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK 153 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~ 153 (586)
|++|+.++|+.|++++.+|+++|++|+.+++. +.+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~ 42 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLE 42 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHH
Confidence 58999999999999999999999999999883 54555543
No 187
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0024 Score=58.57 Aligned_cols=33 Identities=30% Similarity=0.735 Sum_probs=31.6
Q ss_pred CeEEEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
+.|+||..+.|--|.+|+++|+++||+|+++++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 369999999999999999999999999999998
No 188
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.67 E-value=0.0023 Score=58.11 Aligned_cols=41 Identities=15% Similarity=0.416 Sum_probs=34.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK 153 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~ 153 (586)
+|+||+.+.|+.|++++.+|+++|++|+++++ ++.+..++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~ 43 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLR 43 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHH
Confidence 48899999999999999999999999999988 344555554
No 189
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.49 E-value=0.013 Score=48.27 Aligned_cols=55 Identities=25% Similarity=0.483 Sum_probs=37.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cCCCeEEEEecccchhhh-ccCCCceeeEEEEcc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDY----YGVSYDIVEVNAVLRQQI-KWSSYKKVPILLVKV 167 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~e----kGI~YE~v~Vd~~~~~~l-~~sp~gkVPvL~idg 167 (586)
+++||+.++||+|.+++-.|+. .+..++...+|....+++ ...+...+|+++++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g 61 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVING 61 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECC
Confidence 5889999999999999887753 454455555553332222 245677899999864
No 190
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.35 E-value=0.0048 Score=50.27 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=30.9
Q ss_pred EEEEccCCChhHHHHHHHHHH--cCCceEEEEecCC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDY--YGVSYDIVEVNAV 583 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~--~gi~y~~v~V~p~ 583 (586)
+++|....||+|.+++.+|.. +|++|+.+++++.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~ 36 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW 36 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc
Confidence 479999999999999999999 8999999999653
No 191
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.31 E-value=0.011 Score=49.38 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=40.5
Q ss_pred cEEEEEcCCChhHHHH----HHHHHhcCCCeEEEEecccchhhhccCCCceeeEEEEcc
Q psy2688 113 KITLFQYPTCPFCCKV----RAFLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKV 167 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KV----R~~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg 167 (586)
.|.+|. +|||+|..+ +.++++.|++++.+.++. ..+...-+...+|+++++|
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~--~~~a~~~~v~~vPti~i~G 57 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD--MNEILEAGVTATPGVAVDG 57 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHcCCCcCCEEEECC
Confidence 577776 999999998 678899999999999872 1122335788899999964
No 192
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.29 E-value=0.0058 Score=50.50 Aligned_cols=33 Identities=42% Similarity=0.792 Sum_probs=29.5
Q ss_pred EEEEccC-------CChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYP-------TCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~-------~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|+.. .||||.+|+.+|+++|++|+.++++.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~ 41 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL 41 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc
Confidence 6899998 46999999999999999999998853
No 193
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0065 Score=55.69 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=35.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEec--ccchhhhc
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK 153 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~ 153 (586)
++|++|+.+.|.-|+|++.+|+++||+|+.+++- +.+++++.
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~ 44 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELK 44 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHH
Confidence 4799999999999999999999999999999883 55555543
No 194
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.23 E-value=0.0067 Score=49.63 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.9
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.||+|.+++.+|.++|++|+.+.++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~ 34 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDL 34 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCc
Confidence 689999999999999999999999999998854
No 195
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.20 E-value=0.0057 Score=50.70 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.8
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.||+|.+++..|.++|++|+.++|+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~ 33 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSL 33 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecC
Confidence 479999999999999999999999999999865
No 196
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.10 E-value=0.0086 Score=50.10 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=29.2
Q ss_pred eEEEEccCCChhHHHH----HHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKV----RAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~ka----k~~L~~~gi~y~~v~V~ 581 (586)
.|.+|+ +|||.|..+ +.+++++|++++.++||
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT 37 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 688998 999999999 77999999999999885
No 197
>PRK10853 putative reductase; Provisional
Probab=95.98 E-value=0.0086 Score=54.82 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=34.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK 153 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~ 153 (586)
||++|+.+.|.-|+|++.+|+++|++|+.+++ ++.+.+++.
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~ 43 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQ 43 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHH
Confidence 38999999999999999999999999999987 344455444
No 198
>PRK10026 arsenate reductase; Provisional
Probab=95.93 E-value=0.011 Score=55.90 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=36.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK 153 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~ 153 (586)
.+|++|+++.|.-|+|++.+|+++|++|+++++ ++.+.+++.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~ 45 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELV 45 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHH
Confidence 369999999999999999999999999999988 455555554
No 199
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.84 E-value=0.013 Score=54.40 Aligned_cols=41 Identities=15% Similarity=0.368 Sum_probs=35.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK 153 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~ 153 (586)
.|+||+++.|.-|+|++.+|+++||+|+.+++ ++.+.+++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~ 44 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLR 44 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHH
Confidence 58899999999999999999999999999988 344555544
No 200
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=95.76 E-value=0.012 Score=51.72 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=27.0
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEecCCC
Q psy2688 555 YPTCPFCCKVRAFLDYYGVSYDIVEVNAVL 584 (586)
Q Consensus 555 ~~~CPfC~kak~~L~~~gi~y~~v~V~p~~ 584 (586)
...||||++++..|.++||+|+.++||+..
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~ 48 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKR 48 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCC
Confidence 478999999999999999999999997643
No 201
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=95.70 E-value=0.013 Score=49.27 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 556 PTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 556 ~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
.+||||.|++.+|.++||+|+.++++.
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~ 40 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEF 40 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecC
Confidence 789999999999999999999998854
No 202
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=95.52 E-value=0.016 Score=46.67 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=30.4
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|....||+|.+++.+|.++||+|+.++|+.
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~ 33 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNL 33 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecC
Confidence 379999999999999999999999999998864
No 203
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.46 E-value=0.019 Score=51.97 Aligned_cols=40 Identities=20% Similarity=0.482 Sum_probs=33.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK 153 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~ 153 (586)
|+||+.+.|+-|+|++.+|+++|++|+.+++ ++.+..++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~ 42 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELE 42 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHH
Confidence 5799999999999999999999999999987 354555544
No 204
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.038 Score=47.12 Aligned_cols=59 Identities=31% Similarity=0.586 Sum_probs=46.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCeEEEEecc---cch---------h---hhccCCCceeeEEEEccCCCcEEec
Q psy2688 115 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA---VLR---------Q---QIKWSSYKKVPILLVKVPNGYQQMN 175 (586)
Q Consensus 115 ~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~---~~~---------~---~l~~sp~gkVPvL~idg~dG~~~I~ 175 (586)
+||+...||-|..+...|+..+++|+.|++.. ..+ + +.+.+++--+|.|..++ |..+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d--~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDD--GKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCC--CcEEEe
Confidence 89999999999999999999999999999931 111 1 22358899999999874 544444
No 205
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.37 E-value=0.022 Score=51.42 Aligned_cols=40 Identities=25% Similarity=0.472 Sum_probs=33.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK 153 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~ 153 (586)
|+||+.+.|+-|+|++.+|+++|++|+.+++ ++.+..++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~ 42 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELR 42 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHH
Confidence 5799999999999999999999999999987 344444443
No 206
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=95.33 E-value=0.019 Score=46.73 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=30.5
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|....|+.|.+++.+|.++|++|+.+++++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~ 33 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITY 33 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCH
Confidence 478999999999999999999999999999865
No 207
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.30 E-value=0.043 Score=45.78 Aligned_cols=52 Identities=23% Similarity=0.476 Sum_probs=37.5
Q ss_pred cEEEEEcCCChhHHHHHH----HHHhcCCCeEEEEecccchhhhccCCCceeeEEEEcc
Q psy2688 113 KITLFQYPTCPFCCKVRA----FLDYYGVSYDIVEVNAVLRQQIKWSSYKKVPILLVKV 167 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~----~L~ekGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg 167 (586)
.|++ ..++||+|.++.. ++...|+.++.+.+ ...+++.-.+-..||.|++||
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~~~ygv~~vPalvIng 57 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEIEKYGVMSVPALVING 57 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHHHHTT-SSSSEEEETT
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHHHHcCCCCCCEEEECC
Confidence 5777 4567999997765 66677888877765 333445557889999999975
No 208
>KOG0911|consensus
Probab=95.15 E-value=0.051 Score=54.98 Aligned_cols=70 Identities=27% Similarity=0.468 Sum_probs=58.8
Q ss_pred CCcEEEEEc-----CCChhHHHHHHHHHhcCCCeEEEEe--cccchhhhc-cCCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 111 GLKITLFQY-----PTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQQIK-WSSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 111 ~~~I~LY~~-----~~cPfC~KVR~~L~ekGI~YE~v~V--d~~~~~~l~-~sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
...+.||-+ |-|.|.+++--.|+..|++|+..+| |...++.++ .|...|.|+|+++| ..+++.+.|..
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G----EFiGGlDIl~~ 213 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG----EFIGGLDILKE 213 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC----EeccCcHHHHH
Confidence 446889977 7899999999999999999999988 444566666 69999999999976 99999988876
Q ss_pred HH
Q psy2688 183 CL 184 (586)
Q Consensus 183 yL 184 (586)
.+
T Consensus 214 m~ 215 (227)
T KOG0911|consen 214 MH 215 (227)
T ss_pred Hh
Confidence 44
No 209
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.12 E-value=0.027 Score=46.43 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=30.5
Q ss_pred EEEccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 551 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
++|....||+|.+++-+|.++|++|+.++|+..
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~ 34 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPG 34 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccc
Confidence 589999999999999999999999999999653
No 210
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=95.02 E-value=0.031 Score=46.53 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=29.5
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+. |+|.+++.+|+++|++|+.++|+.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~ 33 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDI 33 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecC
Confidence 68999986 999999999999999999998863
No 211
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.00 E-value=0.061 Score=39.38 Aligned_cols=54 Identities=33% Similarity=0.536 Sum_probs=40.5
Q ss_pred EEEEEcCCChhHHHHHHHHH-----hcCCCeEEEEecccchhhh--ccCCCceeeEEEEcc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLD-----YYGVSYDIVEVNAVLRQQI--KWSSYKKVPILLVKV 167 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~-----ekGI~YE~v~Vd~~~~~~l--~~sp~gkVPvL~idg 167 (586)
+.+|...+||+|.+++..+. ..++.+..+.++....... ...+...+|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence 45788899999999999999 6778888777764332211 356788999998765
No 212
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=94.99 E-value=0.076 Score=44.62 Aligned_cols=56 Identities=27% Similarity=0.368 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHhcCCC---eEEEEecccchhhhccCCCceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 121 TCPFCCKVRAFLDYYGVS---YDIVEVNAVLRQQIKWSSYKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 121 ~cPfC~KVR~~L~ekGI~---YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
.+|-|-++-++|+..+.+ |+.+..+- -..+|.+++|+|.+. |++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-----~~~Sptg~LP~L~~~---~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-----PWLSPTGELPALIDS---GGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-----CCcCCCCCCCEEEEC---CCcEEECHHHHHHhh
Confidence 579999999999999999 88877642 135899999999982 239999999999987
No 213
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=94.98 E-value=0.039 Score=45.32 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=30.5
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.||+|.+++.+|.++|++|+.+.|+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~ 33 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDL 33 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecC
Confidence 479999999999999999999999999998854
No 214
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.53 E-value=0.064 Score=45.45 Aligned_cols=54 Identities=19% Similarity=0.448 Sum_probs=37.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcC--CCeEEEEecccchhhhc-cCCCceeeEEEEcc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYG--VSYDIVEVNAVLRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekG--I~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg 167 (586)
.++||+.++|+-|..++..|+... .+++...+|....+++. .-+ ..||||.+++
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc-CCCCEEEEcC
Confidence 379999999999999999999643 34555555544444443 233 4799999875
No 215
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.51 E-value=0.052 Score=44.59 Aligned_cols=32 Identities=38% Similarity=0.842 Sum_probs=26.1
Q ss_pred eEEEEccCCChhHHHHHHHHHH----cC--CceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDY----YG--VSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~----~g--i~y~~v~V 580 (586)
+|++|..+|||+|.+++..|++ .+ +.+..+|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~ 39 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINV 39 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeC
Confidence 6899999999999999999864 34 56666666
No 216
>PHA02125 thioredoxin-like protein
Probab=94.48 E-value=0.05 Score=45.19 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=25.1
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
|++|+.+|||.|.+++..|++ ++|+.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd 31 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVD 31 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeee
Confidence 889999999999999999975 456666664
No 217
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.44 E-value=0.053 Score=45.94 Aligned_cols=33 Identities=21% Similarity=0.582 Sum_probs=26.9
Q ss_pred eEEEEccCCChhHHHHHHHHHHc----CCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYY----GVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~----gi~y~~v~V~ 581 (586)
.|++|++++|+.|..++..|+.. ++.++++||+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~ 37 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID 37 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC
Confidence 48999999999999999999954 4668888884
No 218
>PHA02125 thioredoxin-like protein
Probab=94.22 E-value=0.071 Score=44.23 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=37.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhhc-cCCCceeeEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIK-WSSYKKVPILL 164 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~ 164 (586)
+|.+|+.+|||.|..++..|+. ++++.+.+|....+++. ..+-..+|++.
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 3789999999999999998864 56777777644334443 35677899988
No 219
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.056 Score=46.11 Aligned_cols=30 Identities=37% Similarity=0.755 Sum_probs=29.3
Q ss_pred EEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 551 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
++|-...||.|.-++++|++.+|+|+.|||
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeI 34 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEI 34 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeeh
Confidence 799999999999999999999999999998
No 220
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.94 E-value=0.054 Score=46.97 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=29.3
Q ss_pred eEEEEccCCChhHHHHHHHHHHc-----CCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V~ 581 (586)
+|.+|..++||+|..++.++++. +|.|+.+|++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~ 52 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA 52 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH
Confidence 79999999999999999988765 6899999883
No 221
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=93.92 E-value=0.074 Score=43.71 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=30.6
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.|+.|.+++.+|.++|++|+.++|+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~ 34 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY 34 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH
Confidence 589999999999999999999999999999853
No 222
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.90 E-value=0.13 Score=44.59 Aligned_cols=57 Identities=11% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccchhhhccCCCceeeEEEEcc
Q psy2688 110 TGLKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVLRQQIKWSSYKKVPILLVKV 167 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg 167 (586)
.+-.|.+|..++||+|..++.++.+. ++.++.++++.. .+...-.+-..||.++++|
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-~e~a~~~~V~~vPt~vidG 73 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-QDEVEERGIMSVPAIFLNG 73 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-HHHHHHcCCccCCEEEECC
Confidence 34568999999999999988776654 677777776521 1112235666799999864
No 223
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.86 E-value=0.14 Score=37.38 Aligned_cols=33 Identities=39% Similarity=0.855 Sum_probs=28.3
Q ss_pred EEEEccCCChhHHHHHHHHH-----HcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLD-----YYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~-----~~gi~y~~v~V~p 582 (586)
|.+|...+||+|.+++..|+ ..++.+..++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCC
Confidence 46788999999999999999 6788898888843
No 224
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=92.77 E-value=0.14 Score=41.71 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=30.1
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+..|+|.+++..|.++|++|+.++++.
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~ 33 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGG 33 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEecc
Confidence 368999999999999999999999999998853
No 225
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=92.12 E-value=0.075 Score=46.74 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHcCCceEEEEe--cCCC
Q psy2688 560 FCCKVRAFLDYYGVSYDIVEV--NAVL 584 (586)
Q Consensus 560 fC~kak~~L~~~gi~y~~v~V--~p~~ 584 (586)
-|..++++|+.+||+|+++|| |+..
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~ 44 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEEN 44 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHH
Confidence 699999999999999999999 4443
No 226
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=92.05 E-value=0.13 Score=42.03 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHcCCceEEEEe
Q psy2688 557 TCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 557 ~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
.||||.|++-+|.++|++|+...|
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v 24 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVV 24 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEE
T ss_pred CchHhHHHHHHHHHhCCCCEEEEE
Confidence 599999999999999999998877
No 227
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=91.49 E-value=0.24 Score=40.62 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=27.9
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+++|..+.| .|.+++.+|.++|++|+.++|+.
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~ 32 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDL 32 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEec
Confidence 368988887 48999999999999999998865
No 228
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=91.32 E-value=0.22 Score=44.47 Aligned_cols=29 Identities=24% Similarity=0.731 Sum_probs=23.4
Q ss_pred EEcCCChhHHHHHHHHHhcCCCeEEEEec
Q psy2688 117 FQYPTCPFCCKVRAFLDYYGVSYDIVEVN 145 (586)
Q Consensus 117 Y~~~~cPfC~KVR~~L~ekGI~YE~v~Vd 145 (586)
|+.+.|.-|+|++.+|+++||+|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999999883
No 229
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.23 E-value=1.8 Score=40.63 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred cCCCCChhhhhHHHHHHhhhhccccccCCCCCCHHHHHHHHhhhh
Q psy2688 376 GGQKPNLADLAVYGVLSSIEGCEAFKDLMAKSKIKPWYERMRTNV 420 (586)
Q Consensus 376 ~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~P~L~aW~eRmke~~ 420 (586)
.+.++|+-|+.+|+.|+.+--. +++.=-|+|.+|+++|.+.-
T Consensus 82 ~n~~ls~DDi~lFp~LR~Lt~v---kgi~~P~~V~~Y~~~~s~~t 123 (128)
T cd03199 82 VNGQLSTDDIILFPILRNLTLV---KGLVFPPKVKAYLERMSALT 123 (128)
T ss_pred cCCcCCHHHHHHHHHHhhhhhh---cCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999998554 33422379999999998763
No 230
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=91.01 E-value=1.1 Score=42.27 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=30.5
Q ss_pred eecCCCCChhhhhHHHHHHhhhhccccccCCCC-CCHHHHHHHHhhhh
Q psy2688 374 FFGGQKPNLADLAVYGVLSSIEGCEAFKDLMAK-SKIKPWYERMRTNV 420 (586)
Q Consensus 374 FL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~~~-P~L~aW~eRmke~~ 420 (586)
--.+.++|+-||.+|+.|+.+--.. ++ ++ |+|.+|+++|.+.-
T Consensus 79 ~~~n~~LS~dDi~lFp~LR~Ltivk---gi-~~P~~V~~Y~~~~s~~t 122 (132)
T PF04399_consen 79 NAVNGELSIDDIILFPILRSLTIVK---GI-QWPPKVRAYMDRMSKAT 122 (132)
T ss_dssp TBTTSS--HHHHHHHHHHHHHCTCT---TS----HHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHhhhhhcc---CC-cCCHHHHHHHHHHHHHc
Confidence 3334499999999999999985443 33 34 79999999998864
No 231
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.58 E-value=0.43 Score=43.71 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=27.7
Q ss_pred CeEEEEccCCChhHHHH----HHHHHHcCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKV----RAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~ka----k~~L~~~gi~y~~v~V~ 581 (586)
.-|..|..+|||+|+++ +.+.++.++++-.+|+|
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 35889999999999995 55566667888888886
No 232
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.51 E-value=0.78 Score=41.08 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCh------hHHHHHHHHHhcCCCeEEEEec--ccchhhhc--c--------CCCceeeEEEEccCCCcEE
Q psy2688 112 LKITLFQYPTCP------FCCKVRAFLDYYGVSYDIVEVN--AVLRQQIK--W--------SSYKKVPILLVKVPNGYQQ 173 (586)
Q Consensus 112 ~~I~LY~~~~cP------fC~KVR~~L~ekGI~YE~v~Vd--~~~~~~l~--~--------sp~gkVPvL~idg~dG~~~ 173 (586)
|.|+||....+. .+.++..+|+.++|+|+.+++. ...++.++ . ++..-.|+|+.++ ..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~----~Y 76 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGD----EY 76 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETT----EE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCC----EE
Confidence 357888875443 3557889999999999999884 33333332 1 2344458999764 99
Q ss_pred ecChHHHHH
Q psy2688 174 MNDSSMIVS 182 (586)
Q Consensus 174 I~eS~aIi~ 182 (586)
+++-.++.+
T Consensus 77 ~Gdye~f~e 85 (99)
T PF04908_consen 77 CGDYEDFEE 85 (99)
T ss_dssp EEEHHHHHH
T ss_pred EeeHHHHHH
Confidence 999888865
No 233
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=90.15 E-value=0.25 Score=44.36 Aligned_cols=33 Identities=15% Similarity=0.538 Sum_probs=25.0
Q ss_pred eEEEE-ccCCChhHHHHHHHHHHcC-----CceEEEEec
Q psy2688 549 KITLF-QYPTCPFCCKVRAFLDYYG-----VSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY-~~~~CPfC~kak~~L~~~g-----i~y~~v~V~ 581 (586)
.|++| +.+|||+|..++.+|++.. |.+..+|+|
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d 62 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD 62 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC
Confidence 35555 7799999999999997553 567777764
No 234
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=89.68 E-value=0.34 Score=50.22 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=26.7
Q ss_pred EccCCChhHHHHHHHHHHcCCceEEEEecCC
Q psy2688 553 FQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV 583 (586)
Q Consensus 553 Y~~~~CPfC~kak~~L~~~gi~y~~v~V~p~ 583 (586)
+....||||.+++.+|+++||+|+.+.|+..
T Consensus 68 ~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~ 98 (265)
T PLN02817 68 NKLGDCPFCQRVLLTLEEKHLPYDMKLVDLT 98 (265)
T ss_pred CcCCCCcHHHHHHHHHHHcCCCCEEEEeCcC
Confidence 3456699999999999999999999988653
No 235
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=88.39 E-value=0.58 Score=37.91 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=27.4
Q ss_pred EEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 551 TLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
++|.... ++|.+++.+|.++|++|+.+.|+.
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~ 32 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDR 32 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCC
Confidence 6787776 789999999999999999999865
No 236
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=87.82 E-value=0.87 Score=36.74 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH-----cCCceEEEEecC
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNA 582 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~-----~gi~y~~v~V~p 582 (586)
..-+.+|..++|++|.+++..|++ .++.+-.++++.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~ 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC
Confidence 445888999999999999999988 888888888743
No 237
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=87.29 E-value=0.9 Score=39.04 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=27.8
Q ss_pred CeEEEEccCCChhHHHHHHHHHH------cCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY------YGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~------~gi~y~~v~V~ 581 (586)
.-+.+|..+|||.|...+..|++ .++.+.++|++
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d 54 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID 54 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC
Confidence 45788999999999999999877 45777777773
No 238
>PRK11752 putative S-transferase; Provisional
Probab=87.15 E-value=0.96 Score=46.52 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=44.8
Q ss_pred ccccccccccccccccccccCCCCC--CCCeEEEEccCCChhHHHHHHHHHHc------CCceEEEEecC
Q psy2688 521 GLKINGKTMNKIIIPIMWVVVPEDT--TGLKITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVNA 582 (586)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~I~lY~~~~CPfC~kak~~L~~~------gi~y~~v~V~p 582 (586)
--|-||-....|--|+.-++.-+-. ....+++|.. .||+|.+|+.+|.++ |++|+.+.|+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~ 82 (264)
T PRK11752 14 WDKSNGGAFANINRPVAGATHEKTLPVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRI 82 (264)
T ss_pred cccCCCCcccccCCCCCCcchhcccCCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecC
Confidence 3456777777777777655544332 1236999986 599999999999997 99999988854
No 239
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.97 E-value=0.94 Score=37.24 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=25.6
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 555 YPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 555 ~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
...||+|.+++..|.++|++|+.++|+.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~ 34 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPL 34 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 4679999999999999999999998865
No 240
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=86.43 E-value=2 Score=38.45 Aligned_cols=52 Identities=13% Similarity=0.376 Sum_probs=33.6
Q ss_pred cEEEE-EcCCChhHHHHHHHHHhcC-----CCeEEEEecccchhhhc-cCCCceeeEEEEc
Q psy2688 113 KITLF-QYPTCPFCCKVRAFLDYYG-----VSYDIVEVNAVLRQQIK-WSSYKKVPILLVK 166 (586)
Q Consensus 113 ~I~LY-~~~~cPfC~KVR~~L~ekG-----I~YE~v~Vd~~~~~~l~-~sp~gkVPvL~id 166 (586)
.+.+| +.+|||+|..++.+|++.. +.+..++++ ..+++. .-+-..||.+.+-
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEEE
Confidence 35555 5689999999988776443 344444444 223333 3577889988874
No 241
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=85.05 E-value=0.86 Score=39.69 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=17.9
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
..-|.+|+.++||||.+....+..
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 346889999999999999777663
No 242
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=84.52 E-value=1.3 Score=37.02 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=29.1
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~ 581 (586)
.++|-.+..+-|.+++.+|.+.|++|+.+.|+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~ 33 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIE 33 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEec
Confidence 47899999899999999999999999998875
No 243
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=83.53 E-value=1.5 Score=44.67 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=25.6
Q ss_pred CCCeEEEEccCCChhHHHHHHHHHHc---CCceEEE
Q psy2688 546 TGLKITLFQYPTCPFCCKVRAFLDYY---GVSYDIV 578 (586)
Q Consensus 546 ~~~~I~lY~~~~CPfC~kak~~L~~~---gi~y~~v 578 (586)
....|++|+-+.||||++....|++. ||.+..+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34579999999999999999888775 4544443
No 244
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=83.33 E-value=1 Score=44.74 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=25.8
Q ss_pred eEEEEccCCChhHHHHHHHHHHc-----CCceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V 580 (586)
.|.+|+.+|||+|..++.+|++. .|.+..+|+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~ 172 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEA 172 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeC
Confidence 68889999999999999988864 366666665
No 245
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=83.26 E-value=3.5 Score=41.04 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=37.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccchhhhc-cCCCceeeEEEEcc
Q psy2688 110 TGLKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg 167 (586)
.+-.|.+|+.+|||+|..++.+|+.. .|.+. .+|....+++. ..+-..||++++.+
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~--~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGE--MIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEE--EEeCCCCHHHHHHhCCccCCEEEEec
Confidence 34468889999999999998777753 23333 34433333332 35777899999975
No 246
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=82.81 E-value=1.7 Score=44.69 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCCeEEEEccCCChhHHHHHHHHHH---cC-CceEEEEe
Q psy2688 546 TGLKITLFQYPTCPFCCKVRAFLDY---YG-VSYDIVEV 580 (586)
Q Consensus 546 ~~~~I~lY~~~~CPfC~kak~~L~~---~g-i~y~~v~V 580 (586)
....|.+|+-+.||||++....|.. .| |.+..+-+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3446999999999999999666542 23 66655543
No 247
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.12 E-value=1.7 Score=49.00 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccchhhhc-cCCCceeeEEEEcc
Q psy2688 110 TGLKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg 167 (586)
.+..|++|..++||||-.+..++... +|..+.+ |....+++. .-....||.+++++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~ 178 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMI--DGALFQDEVEALGIQGVPAVFLNG 178 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE--EchhCHHHHHhcCCcccCEEEECC
Confidence 35579999999999999987666544 4444443 333333333 35667999999975
No 248
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=81.99 E-value=1.6 Score=36.39 Aligned_cols=31 Identities=29% Similarity=0.806 Sum_probs=23.9
Q ss_pred eEEEEccCCChhHHHHHH----HHHHcCCceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRA----FLDYYGVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~----~L~~~gi~y~~v~V 580 (586)
+|.+| .++||+|.++.+ .++..|+.++.+++
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~ 36 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI 36 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67885 566999996665 66677988888877
No 249
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.11 E-value=2 Score=48.37 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=38.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccchhhhc-cCCCceeeEEEEcc
Q psy2688 110 TGLKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg 167 (586)
.+..|++|..++||||..+..++... .|..+.+ |....+++. .-....||.+++++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~~ 177 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI--DGALFQDEVEARNIMAVPTVFLNG 177 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE--EchhCHhHHHhcCCcccCEEEECC
Confidence 35579999999999999887655443 4444444 333333333 35677999999975
No 250
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=80.92 E-value=2 Score=41.96 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=27.6
Q ss_pred CCCeEEEEccCCChhHHHHHHHHHH--cCCceEEEEe
Q psy2688 546 TGLKITLFQYPTCPFCCKVRAFLDY--YGVSYDIVEV 580 (586)
Q Consensus 546 ~~~~I~lY~~~~CPfC~kak~~L~~--~gi~y~~v~V 580 (586)
....|.+|+-+.||||.++...|+. .+|.+..+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 3458999999999999999999984 4565555544
No 251
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=79.90 E-value=5.5 Score=31.96 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEecccchhhhccCCCceeeEEEEc
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAVLRQQIKWSSYKKVPILLVK 166 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~~~~~l~~sp~gkVPvL~id 166 (586)
..-+.+|+.++|+.|.++...|++ .++.+-.+.++.. ..-....+...+|+++.-
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~~ 70 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-PELAEEYGVRSIPTFLFF 70 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-hhHHHhcCcccccEEEEE
Confidence 345777888999999999888776 7777766665431 111122355668987754
No 252
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=79.75 E-value=2.3 Score=39.23 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=20.0
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhhcc
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEGCE 398 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~~~ 398 (586)
+++||+|+ .|+||..++.++..+...+
T Consensus 62 g~~~LFGe-wsIAD~dlA~ml~Rl~~~g 88 (117)
T PF14834_consen 62 GGPNLFGE-WSIADADLALMLNRLVTYG 88 (117)
T ss_dssp --SSTTSS---HHHHHHHHHHHHHHTTT
T ss_pred CCCCcccc-chHHHHHHHHHHHHHHHcC
Confidence 78999997 8999999999999886543
No 253
>KOG2824|consensus
Probab=77.79 E-value=3 Score=43.76 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=55.2
Q ss_pred CCCCCCCcEEEEEc------CCChhHHHHHHHHHhcCCCeEEEEecc--cchhhhc-c----CCCceeeEEEEccCCCcE
Q psy2688 106 PEDTTGLKITLFQY------PTCPFCCKVRAFLDYYGVSYDIVEVNA--VLRQQIK-W----SSYKKVPILLVKVPNGYQ 172 (586)
Q Consensus 106 p~~~~~~~I~LY~~------~~cPfC~KVR~~L~ekGI~YE~v~Vd~--~~~~~l~-~----sp~gkVPvL~idg~dG~~ 172 (586)
|.... .|.+|.- .+=--|..||++|+..++-|++.+|.. ..+++|+ + ...-++|+|+++| .
T Consensus 127 Pgge~--~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~G----r 200 (281)
T KOG2824|consen 127 PGGED--RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKG----R 200 (281)
T ss_pred CCCCc--eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEcc----E
Confidence 55544 6888875 233568899999999999999999964 3456665 1 3467889999976 9
Q ss_pred EecChHHHHH
Q psy2688 173 QMNDSSMIVS 182 (586)
Q Consensus 173 ~I~eS~aIi~ 182 (586)
.|++...|.+
T Consensus 201 yIGgaeeV~~ 210 (281)
T KOG2824|consen 201 YIGGAEEVVR 210 (281)
T ss_pred EeccHHHhhh
Confidence 9999999976
No 254
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.56 E-value=1.6 Score=39.37 Aligned_cols=40 Identities=30% Similarity=0.634 Sum_probs=34.5
Q ss_pred CCeEEEEc-----cCCChhHHHHHHHHHHcC-CceEEEEe--cCCCCC
Q psy2688 547 GLKITLFQ-----YPTCPFCCKVRAFLDYYG-VSYDIVEV--NAVLRQ 586 (586)
Q Consensus 547 ~~~I~lY~-----~~~CPfC~kak~~L~~~g-i~y~~v~V--~p~~r~ 586 (586)
.++|++|- .+-|.|..+|-+.|+..| ++|..+|| |++.||
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~ 61 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQ 61 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHh
Confidence 45788885 477999999999999999 89999999 887775
No 255
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=75.85 E-value=6.4 Score=36.13 Aligned_cols=65 Identities=25% Similarity=0.492 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHhc---CCCeEEEEecccc-hhh-hc-c-CCCceeeEEEEccCC----------CcEEecChHHHHHHH
Q psy2688 122 CPFCCKVRAFLDYY---GVSYDIVEVNAVL-RQQ-IK-W-SSYKKVPILLVKVPN----------GYQQMNDSSMIVSCL 184 (586)
Q Consensus 122 cPfC~KVR~~L~ek---GI~YE~v~Vd~~~-~~~-l~-~-sp~gkVPvL~idg~d----------G~~~I~eS~aIi~yL 184 (586)
||+|..+.-+|... .-..+++.|+... +.. +. + -.+...|+|+.++++ |...|.|+..|++||
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~L 103 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYL 103 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHH
Confidence 99999999888754 2234444455322 222 22 2 347889999987521 124899999999988
Q ss_pred Hh
Q psy2688 185 AS 186 (586)
Q Consensus 185 ae 186 (586)
++
T Consensus 104 a~ 105 (112)
T PF11287_consen 104 AE 105 (112)
T ss_pred HH
Confidence 75
No 256
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=75.28 E-value=5.4 Score=45.44 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCCChhHHHHHH----HHHhc-CCCeEEEEecccchhhhc-cCCCceeeEEEEcc
Q psy2688 110 TGLKITLFQYPTCPFCCKVRA----FLDYY-GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~----~L~ek-GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg 167 (586)
.+..|++|..++||+|-++.. +..++ +|..+.+++... +++. --+...||.+++|+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i~~ 537 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--PDLKDEYGIMSVPAIVVDD 537 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--HHHHHhCCceecCEEEECC
Confidence 344699999999999998764 45555 799888877532 3333 45788899999975
No 257
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=75.14 E-value=4.3 Score=40.18 Aligned_cols=32 Identities=25% Similarity=0.618 Sum_probs=26.5
Q ss_pred EEEEccCCChhHHHH----HHHHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKV----RAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~ka----k~~L~~~gi~y~~v~V~ 581 (586)
+.+|..+|||+|.+. +++-+++|+.+--|.+|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 778888999999997 77878888877767664
No 258
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=74.18 E-value=3.4 Score=35.65 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.3
Q ss_pred CeEEEEccCCChhHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAF 567 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~ 567 (586)
.-+..|..+|||+|.+.+..
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~ 32 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKV 32 (104)
T ss_pred eEEEEEEcchhHHHHHHHHH
Confidence 35778999999999998743
No 259
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=74.09 E-value=2.7 Score=34.66 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.0
Q ss_pred CeEEEEccCCChhHHHHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.-+.+|..++|++|.+....+.+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~ 39 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEK 39 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHH
Confidence 67889999999999998887754
No 260
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=73.39 E-value=2.7 Score=35.34 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.0
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
..-|.+|..+||+.|.+....|..
T Consensus 14 ~~~~i~f~~~~C~~c~~~~~~~~~ 37 (102)
T TIGR01126 14 KDVLVEFYAPWCGHCKNLAPEYEK 37 (102)
T ss_pred CcEEEEEECCCCHHHHhhChHHHH
Confidence 457999999999999986655543
No 261
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=72.45 E-value=14 Score=33.82 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=24.7
Q ss_pred cEEEEEcCCChhHHHHHH----HHHhcCCCeEEEEec
Q psy2688 113 KITLFQYPTCPFCCKVRA----FLDYYGVSYDIVEVN 145 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~----~L~ekGI~YE~v~Vd 145 (586)
.+..|+.+|||+|+.+.- +.++.++++-.+.++
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 466788899999998654 445556777777776
No 262
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=71.15 E-value=6.4 Score=32.57 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=26.3
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
.+++|..+. .|.+++.+|.+.|++|+.+.|+.
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~ 33 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDF 33 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEET
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEec
Confidence 467888877 89999999999999999999864
No 263
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=69.80 E-value=13 Score=31.83 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=31.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDY----YGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~e----kGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
.+.+|..++|+.|......|+. .+=.+....+|....+++. ..+-..+|.+++
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i 73 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQF 73 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEE
Confidence 4667888999999999877755 1112333444433233332 245578897764
No 264
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=69.47 E-value=5.2 Score=33.81 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=26.2
Q ss_pred ccccccccccccccccccCCCCCCCCeEEEEccCCChhHHHHHHHHHH
Q psy2688 523 KINGKTMNKIIIPIMWVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
+++|.+.++.|. .+ ...-+..|..+||++|......+++
T Consensus 4 ~l~~~~f~~~i~------~~---~~~~~v~f~~~~C~~C~~~~~~~~~ 42 (104)
T cd02995 4 VVVGKNFDEVVL------DS---DKDVLVEFYAPWCGHCKALAPIYEE 42 (104)
T ss_pred EEchhhhHHHHh------CC---CCcEEEEEECCCCHHHHHHhhHHHH
Confidence 456666666553 11 2345778889999999987766543
No 265
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=69.34 E-value=27 Score=31.16 Aligned_cols=19 Identities=37% Similarity=0.924 Sum_probs=15.3
Q ss_pred CcEEEEEcCCChhHHHHHH
Q psy2688 112 LKITLFQYPTCPFCCKVRA 130 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~ 130 (586)
..+..|+.+|||+|.+...
T Consensus 16 ~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred cEEEEEeCCCCHHHHHHHH
Confidence 4566788899999998764
No 266
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=69.09 E-value=8 Score=35.01 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=25.7
Q ss_pred CeEEEEccCCChhHHHHHHHHHH------cCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY------YGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~------~gi~y~~v~V~ 581 (586)
+-+..|..+||++|.+....+.+ .+..|-.++||
T Consensus 21 pVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd 60 (117)
T cd02959 21 PLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLE 60 (117)
T ss_pred cEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEec
Confidence 44677889999999999777766 34467777774
No 267
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=68.54 E-value=12 Score=33.19 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=30.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHH----Hh-c--CCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 109 TTGLKITLFQYPTCPFCCKVRAFL----DY-Y--GVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 109 ~~~~~I~LY~~~~cPfC~KVR~~L----~e-k--GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
....-+..|+.+|||.|+...-.+ +. . ++.+-.+.++ ..+.+. ..+-..+|++.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHSVPAIVG 85 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCccCCEEEE
Confidence 334456678889999998765433 22 2 3444333333 222222 245678887763
No 268
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=68.05 E-value=14 Score=30.96 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=33.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh---c-CCCeEEEEecccchhhhc-cCCCceeeEEEEc
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY---Y-GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVK 166 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e---k-GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~id 166 (586)
.-+..|+.++|+.|+++...|+. . .-.+....+|.....++. --+...+|++.+=
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 75 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFF 75 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEE
Confidence 34566778999999999776654 2 335556666643333332 2345668976543
No 269
>PRK09381 trxA thioredoxin; Provisional
Probab=65.97 E-value=43 Score=28.95 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=30.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cCCCeEEEEecccchhhhc-cCCCceeeEEEEc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDY----YGVSYDIVEVNAVLRQQIK-WSSYKKVPILLVK 166 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~e----kGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~id 166 (586)
-+..|+.++||.|....-.|+. .+-.+....+|....+.+. .-+-..+|++++=
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 4666778999999988655532 2222444444432222222 2356778977653
No 270
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=65.45 E-value=14 Score=31.90 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=30.2
Q ss_pred CcEEEEEcCCChhHHHHHHHH------H--hcCCCeEEEEecccc----hhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFL------D--YYGVSYDIVEVNAVL----RQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L------~--ekGI~YE~v~Vd~~~----~~~l~-~sp~gkVPvL~i 165 (586)
..+..|+.+|||+|.+....+ . ..+ .+..+.+|... ..++. ..+...+|++++
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 346678889999999876433 1 222 34444454321 12222 345677997764
No 271
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=65.41 E-value=9.2 Score=35.53 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCChhHHHH----HHHHHhc-CCCeEEEEecc--cchhhhccCCCceeeEEEEccCCC
Q psy2688 111 GLKITLFQYPTCPFCCKV----RAFLDYY-GVSYDIVEVNA--VLRQQIKWSSYKKVPILLVKVPNG 170 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KV----R~~L~ek-GI~YE~v~Vd~--~~~~~l~~sp~gkVPvL~idg~dG 170 (586)
+..+.++.-+|||-|+.. ..+++.. +|+++.+..|. ........++..+||++++=+++|
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDG 108 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCC
Confidence 446888999999999954 3455666 78777776652 222223238899999887654344
No 272
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=65.35 E-value=26 Score=29.80 Aligned_cols=54 Identities=13% Similarity=0.306 Sum_probs=30.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCCeEEEEecccchhhhc-cCCCceeeEEEEc
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVK 166 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ek-----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~id 166 (586)
.+..|+.+|||+|....-.+... +..+....+|....+.+. ..+-..+|.+++-
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 47778889999999876544322 333333444432222222 2356778877754
No 273
>PTZ00051 thioredoxin; Provisional
Probab=64.29 E-value=11 Score=31.76 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.1
Q ss_pred CeEEEEccCCChhHHHHHHHHHH-----cCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~-----~gi~y~~v~V~ 581 (586)
.-+..|..+||+.|.+....|.. .++.|-.+|++
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~ 58 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD 58 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc
Confidence 45778889999999999887766 35667666664
No 274
>PRK09381 trxA thioredoxin; Provisional
Probab=64.23 E-value=11 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH----c--CCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY----Y--GVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~----~--gi~y~~v~V~ 581 (586)
..-|..|..+|||.|......|++ . ++.+-.++++
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~ 62 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 62 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC
Confidence 456788888999999999876653 2 3555556553
No 275
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=64.01 E-value=10 Score=39.00 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=24.4
Q ss_pred hhhccccCCCCCCCCcEEEEEcCCChhHHHHHHHHH
Q psy2688 98 ENMFQVVVPEDTTGLKITLFQYPTCPFCCKVRAFLD 133 (586)
Q Consensus 98 ~~m~~~~~p~~~~~~~I~LY~~~~cPfC~KVR~~L~ 133 (586)
++|+.+-++ ..+..|.+|+-+.||||+|....+.
T Consensus 107 ~~~i~~g~~--~ak~~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 107 SHWILDGKA--DAPRIVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred cCCccccCC--CCCeEEEEEECCCChhHHHHHHHHH
Confidence 345545444 3445788999999999999976655
No 276
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=63.93 E-value=6.2 Score=35.32 Aligned_cols=22 Identities=32% Similarity=0.713 Sum_probs=17.4
Q ss_pred CCeEEEEccCCChhHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFL 568 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L 568 (586)
.+-+..|..+|||+|.+.+..+
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHh
Confidence 3467889999999999876543
No 277
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=63.27 E-value=3 Score=37.39 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=21.7
Q ss_pred EEEEccCCC------hhHHHHHHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTC------PFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~C------PfC~kak~~L~~~gi~y~~v~V 580 (586)
|.||.+..= --|.++..+|+.++|+|+++||
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDI 39 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDI 39 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEET
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeC
Confidence 556654433 2578999999999999999999
No 278
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=62.43 E-value=7.4 Score=31.81 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=23.9
Q ss_pred EEEEccCCChhHHHHHHHHHHc------CCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~------gi~y~~v~V 580 (586)
|.+|.-..||||......|++. ++.+..+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 5789999999999999998774 355555544
No 279
>PHA02278 thioredoxin-like protein
Probab=62.01 E-value=14 Score=32.86 Aligned_cols=36 Identities=11% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHc------CCceEEEEecC
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVNA 582 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~------gi~y~~v~V~p 582 (586)
.+-|.-|..+||+.|......|++. .+.+..+|||.
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~ 56 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDA 56 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCc
Confidence 4568889999999999988766442 25688888863
No 280
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=60.94 E-value=12 Score=36.58 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=24.7
Q ss_pred hccccCCCCCCCCcEEEEEcCCChhHHHHHHHHHh
Q psy2688 100 MFQVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDY 134 (586)
Q Consensus 100 m~~~~~p~~~~~~~I~LY~~~~cPfC~KVR~~L~e 134 (586)
++.+-+++ .+..|.+|+-+.||||++....|..
T Consensus 69 ~i~~g~~~--~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 69 AIVYGKGN--GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CeEEcCCC--CCEEEEEEECCCCccHHHHHHHHhh
Confidence 34444443 4457889999999999999988875
No 281
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=60.39 E-value=8.7 Score=43.79 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=26.9
Q ss_pred eEEEEccCCChhHHHHHHH----HHHc-CCceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRAF----LDYY-GVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~----L~~~-gi~y~~v~V 580 (586)
.|++|..++||||-++.+. ..++ +|..+.+|+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~ 515 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV 515 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC
Confidence 6999999999999987764 4455 799999988
No 282
>PTZ00051 thioredoxin; Provisional
Probab=60.27 E-value=35 Score=28.68 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=32.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEecccchhhh-ccCCCceeeEEEEccCCC
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAVLRQQI-KWSSYKKVPILLVKVPNG 170 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~~~~~l-~~sp~gkVPvL~idg~dG 170 (586)
.-+..|+.++|+.|++..-.|.. .++.+-.+.++ ....+ .--+-..+|++++-. +|
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~-~g 81 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK-NG 81 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-CC
Confidence 34667788999999988765554 34444333333 22222 224557789776653 45
No 283
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=60.09 E-value=13 Score=31.02 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.8
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 556 PTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 556 ~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
...|||.|+..+|+-.|++|+.+..
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~ 38 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPS 38 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEec
Confidence 3469999999999999999987754
No 284
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=59.98 E-value=68 Score=26.68 Aligned_cols=55 Identities=20% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHH----hcCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLD----YYGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~----ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
..-+..|+.++|+.|...+-.|. ..+-++....+|......+. --+-..+|.+..
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEE
Confidence 34567788899999998885443 22224555555543333222 345677887654
No 285
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=59.72 E-value=14 Score=32.52 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH-------cCCceEEEEecC
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY-------YGVSYDIVEVNA 582 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~-------~gi~y~~v~V~p 582 (586)
..-+..|..+|||.|.+.+..|.+ .++.+-.++++.
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 346888999999999998876654 245566666643
No 286
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=59.05 E-value=14 Score=33.02 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.2
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH-----cCCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~-----~gi~y~~v~V~ 581 (586)
..-|..|..+|||.|..++..|++ .++.|-.+|++
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~ 62 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE 62 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc
Confidence 445778888999999998888755 36777777774
No 287
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=58.86 E-value=9.7 Score=32.98 Aligned_cols=23 Identities=30% Similarity=0.597 Sum_probs=16.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHH
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLD 133 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ 133 (586)
...+.+|+.++||+|++....+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 44577888899999999875554
No 288
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=58.49 E-value=11 Score=31.91 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 556 PTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 556 ~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
+..++|.|+..+|+..|++|+.+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~ 39 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR 39 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec
Confidence 3456699999999999999998876
No 289
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=58.47 E-value=7.8 Score=33.34 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=18.5
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
..-+..|..+||+.|.+....+++
T Consensus 19 ~~~lv~f~a~wC~~C~~~~~~~~~ 42 (109)
T cd03002 19 YTTLVEFYAPWCGHCKNLKPEYAK 42 (109)
T ss_pred CeEEEEEECCCCHHHHhhChHHHH
Confidence 346888888999999987665544
No 290
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=57.76 E-value=13 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.7
Q ss_pred EEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 552 LFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 552 lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+|-...=+-|.+++.+|.++||+|+.+.|+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~ 33 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYEL 33 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEecc
Confidence 4444444578999999999999999998864
No 291
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=57.74 E-value=58 Score=31.09 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.7
Q ss_pred cEEEEEcCCChhHHHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFL 132 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L 132 (586)
-+..|...|||.|.+..-.|
T Consensus 66 vll~F~a~wC~~C~~~~p~l 85 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYL 85 (173)
T ss_pred EEEEEECCcCHHHHHHHHHH
Confidence 34456679999999764333
No 292
>PHA03075 glutaredoxin-like protein; Provisional
Probab=57.46 E-value=19 Score=33.45 Aligned_cols=51 Identities=27% Similarity=0.471 Sum_probs=41.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhhc-cCCCceeeEEEEc
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIK-WSSYKKVPILLVK 166 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~id 166 (586)
...+.||++|.|+-|.-+..+|.+.-=+|+...|+. +. .+-.+.|=+|-.+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI-----lSfFsK~g~v~~lg~d 53 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNI-----LSFFSKDGQVKVLGMD 53 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe-----eeeeccCCceEEEecc
Confidence 456899999999999999999988888999999885 22 3566777777654
No 293
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=57.36 E-value=32 Score=29.82 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=31.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh----cC-CCeEEEEecccchhhhccCCCceeeEEEEccCCC
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY----YG-VSYDIVEVNAVLRQQIKWSSYKKVPILLVKVPNG 170 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e----kG-I~YE~v~Vd~~~~~~l~~sp~gkVPvL~idg~dG 170 (586)
.-+..|+.+|||.|+...-.|.. .+ -......+|....+..+-..-..+|++.+-. +|
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~-~g 81 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYK-NG 81 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEE-CC
Confidence 34566788999999987655532 22 1123333332222222334567778766543 45
No 294
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=56.21 E-value=13 Score=31.18 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHc------CCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~------gi~y~~v~V~ 581 (586)
..-|..|..+|||.|...+..|.+. +|.|-.+|++
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~ 58 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD 58 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhh
Confidence 4468888889999999998766432 4666666653
No 295
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=55.74 E-value=27 Score=30.55 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEecccc-hhhh--ccCCCceeeEEE
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAVL-RQQI--KWSSYKKVPILL 164 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~~-~~~l--~~sp~gkVPvL~ 164 (586)
..-+..|+.+|||+|....-.+.+ ++-.+....++... ...+ ...+-..+|.+.
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 345777888999999987654433 23234444444222 1222 124667789775
No 296
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=55.38 E-value=19 Score=32.96 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHc-----C-CceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYY-----G-VSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~-----g-i~y~~v~V~ 581 (586)
.+-|.-|..+|||.|.+..-.|++. + +.|-.+|+|
T Consensus 15 ~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD 55 (114)
T cd02954 15 KVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID 55 (114)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC
Confidence 3457779999999999998877443 4 456677774
No 297
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=54.41 E-value=19 Score=36.72 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=25.3
Q ss_pred hccccCCCCCCCCcEEEEEcCCChhHHHHHHHHHhc
Q psy2688 100 MFQVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDYY 135 (586)
Q Consensus 100 m~~~~~p~~~~~~~I~LY~~~~cPfC~KVR~~L~ek 135 (586)
|+.+-+|+. +..|.+|+-+.||||+|...-|...
T Consensus 99 ~i~~g~~~~--k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 99 MIVYKAPQE--KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred cEEecCCCC--CEEEEEEECCCChHHHHHHHHHHHH
Confidence 555556643 4468999999999999998766643
No 298
>PRK10996 thioredoxin 2; Provisional
Probab=54.19 E-value=93 Score=28.77 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHH----hcCCCeEEEEecccchhhhc-cCCCceeeEEEEccCCC
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLD----YYGVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKVPNG 170 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~----ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg~dG 170 (586)
...+..|+.+||+.|+...-.|. +.+-.+..+.+|....+++. ..+-..+|++++-. +|
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~-~G 116 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFK-NG 116 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEE-CC
Confidence 33466778899999998754443 23334555555543333332 34556788776643 45
No 299
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=53.35 E-value=11 Score=31.36 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.5
Q ss_pred eEEEEccCCChhHHHHHHHH
Q psy2688 549 KITLFQYPTCPFCCKVRAFL 568 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L 568 (586)
-+.+++..||++|.+.++.+
T Consensus 20 vlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 36778899999999987765
No 300
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=52.93 E-value=49 Score=29.87 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=30.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh------cCCCeEEEEecccchhh-hccCCCc-eeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY------YGVSYDIVEVNAVLRQQ-IKWSSYK-KVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e------kGI~YE~v~Vd~~~~~~-l~~sp~g-kVPvL~i 165 (586)
+-+..|+.+||++|.+..-.+.. .+..|-.+.++...... ...+..+ .+|++++
T Consensus 21 pVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 21 PLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILF 82 (117)
T ss_pred cEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEE
Confidence 34556778999999988655544 23456666665322111 1122222 4997754
No 301
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=52.61 E-value=9.9 Score=42.87 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=25.8
Q ss_pred CeEEEEccCCChhHHHHHHHHHHc-----CCceEEEEe
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEV 580 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V 580 (586)
..|++|.+++||||-.|.+.+.+. +|..+.+|.
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~ 156 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG 156 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc
Confidence 479999999999999998887664 455555554
No 302
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=52.51 E-value=10 Score=42.68 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=26.1
Q ss_pred CeEEEEccCCChhHHHHHHHHHHc-----CCceEEEEe
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEV 580 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V 580 (586)
..|++|.+++||||-.|.+.+.+. .|..+.+|.
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~ 155 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG 155 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc
Confidence 379999999999999998887654 466666655
No 303
>KOG1147|consensus
Probab=52.17 E-value=8.8 Score=43.85 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=32.3
Q ss_pred CCCeecCCCCChhhhhHHHHHHhhhhccccccCC-CCCCHHHHHH
Q psy2688 371 NGPFFGGQKPNLADLAVYGVLSSIEGCEAFKDLM-AKSKIKPWYE 414 (586)
Q Consensus 371 ~~pFL~Gd~pTlAD~av~g~L~~l~~~~~~~dl~-~~P~L~aW~e 414 (586)
-..||+|.+.|+||+++++.|..-..+...-... ..-+|.+|++
T Consensus 106 ~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 106 LRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 4679999999999999999998854443321112 2458899988
No 304
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=52.05 E-value=88 Score=29.16 Aligned_cols=78 Identities=14% Similarity=0.264 Sum_probs=40.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c--CCCeEEEEecccchhh-hccCCCceeeEEEEccCCCc---EEec--ChHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDY----Y--GVSYDIVEVNAVLRQQ-IKWSSYKKVPILLVKVPNGY---QQMN--DSSMI 180 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~e----k--GI~YE~v~Vd~~~~~~-l~~sp~gkVPvL~idg~dG~---~~I~--eS~aI 180 (586)
-+..|+.+||+.|....-.|.. . ++.+-.+.++...... ....+-..+|.+++=+.+|. ...+ ....|
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l 102 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVL 102 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHH
Confidence 4556777999999987755542 2 2344444444322112 22345566886654222451 2233 23556
Q ss_pred HHHHHhhhcc
Q psy2688 181 VSCLASYLSD 190 (586)
Q Consensus 181 i~yLaeyLee 190 (586)
.+.|.+.+..
T Consensus 103 ~~~l~~l~~~ 112 (142)
T cd02950 103 AQNLDALVAG 112 (142)
T ss_pred HHHHHHHHcC
Confidence 6666655543
No 305
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=51.64 E-value=24 Score=31.17 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCCeEEEEccCCChhHHHHHHHH-------HHcCCceEEEEec
Q psy2688 546 TGLKITLFQYPTCPFCCKVRAFL-------DYYGVSYDIVEVN 581 (586)
Q Consensus 546 ~~~~I~lY~~~~CPfC~kak~~L-------~~~gi~y~~v~V~ 581 (586)
..+-++.|..+|||.|.+....+ +..++.+-.+|++
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d 66 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG 66 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc
Confidence 35568889999999998776443 2235777777764
No 306
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=51.10 E-value=17 Score=30.66 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.4
Q ss_pred CeEEEEccCCChhHHHHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.-+..|..+|||.|...+..++.
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~ 42 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEK 42 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHH
Confidence 46888999999999887666643
No 307
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=50.91 E-value=23 Score=30.97 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=17.9
Q ss_pred EEEEccCCChhHHHHHH-------HHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRA-------FLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~-------~L~~~gi~y~~v~V~ 581 (586)
|.+|.+.+||+|.+.-. .++++|+.+--+..|
T Consensus 30 l~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 30 LFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp EEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 55566668999965432 233446555444443
No 308
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=50.87 E-value=25 Score=29.19 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH-----c-CCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY-----Y-GVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~-----~-gi~y~~v~V~ 581 (586)
..-+..|..+||+.|......|++ . ++.|-.+|++
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~ 55 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD 55 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC
Confidence 345777788999999999777654 2 3666666653
No 309
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=50.70 E-value=26 Score=30.48 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=26.7
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH-----cCCceEEEEecC
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNA 582 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~-----~gi~y~~v~V~p 582 (586)
..-|..|..+||+.|.+....|++ .++.|-.+++|.
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~ 56 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDE 56 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCC
Confidence 345778888999999988877764 357777777753
No 310
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=50.41 E-value=13 Score=32.13 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=17.9
Q ss_pred CCeEEEEccCCChhHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLD 569 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~ 569 (586)
..-+..|..+|||.|.+....|+
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~ 38 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWN 38 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHH
Confidence 34588899999999997765553
No 311
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=50.09 E-value=58 Score=27.30 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=31.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc----CCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYY----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ek----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
-+..|+.+||+.|....-.|.+. +-.+....+|....+++. --+-..+|++++
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 72 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYL 72 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEE
Confidence 45567779999999887655432 223445555543333332 235567897764
No 312
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=50.00 E-value=14 Score=31.24 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.4
Q ss_pred CeEEEEccCCChhHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAF 567 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~ 567 (586)
.-+..|..+|||+|.+....
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~ 38 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPE 38 (104)
T ss_pred CEEEEEECCCCHHHHHhCHH
Confidence 56889999999999988533
No 313
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=49.87 E-value=48 Score=28.29 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=29.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcCCC----eEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYGVS----YDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekGI~----YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
.-+..|+.+||++|....-.+++..-. +....+|-...+.+. ..+-..+|++.+
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 346677889999999877555332222 333444432222221 234567887754
No 314
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=48.93 E-value=18 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.1
Q ss_pred CeEEEEccCCChhHHHHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.-+..|..+||+.|.+.+..|++
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~ 38 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEE 38 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHH
Confidence 34677889999999999888775
No 315
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=48.71 E-value=50 Score=28.44 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=29.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-------cCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY-------YGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e-------kGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
.-+..|+.+|||.|++..-.|.+ .|..+....+|....+.+. ..+-..+|++.+
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 34556777999999976644422 2434444444432222332 235567887753
No 316
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=47.61 E-value=28 Score=32.47 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=25.1
Q ss_pred CeEEEEccCCChhHHHHHHHHHHc------CCceEEEEecC
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVNA 582 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~------gi~y~~v~V~p 582 (586)
+-|..|..+||+.|.+....|.+. .+.|-.++||.
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 457788899999999887666532 35666777754
No 317
>KOG4244|consensus
Probab=47.02 E-value=13 Score=38.94 Aligned_cols=32 Identities=50% Similarity=1.170 Sum_probs=27.0
Q ss_pred eEEEEccC---CC----hhHHHHHHHHHHcCCceEEEEe
Q psy2688 549 KITLFQYP---TC----PFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~---~C----PfC~kak~~L~~~gi~y~~v~V 580 (586)
-|-+||++ .| |||.|+.-+|+..+||||.++-
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~ 83 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC 83 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc
Confidence 57788765 34 7999999999999999999865
No 318
>PF13728 TraF: F plasmid transfer operon protein
Probab=46.84 E-value=39 Score=34.11 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=36.5
Q ss_pred cEEEEEcCCChhHHH----HHHHHHhcCCCeEEEEecccch---------hhh-ccCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCK----VRAFLDYYGVSYDIVEVNAVLR---------QQI-KWSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~K----VR~~L~ekGI~YE~v~Vd~~~~---------~~l-~~sp~gkVPvL~i 165 (586)
-+.+|....||+|.+ ++.+-+..|++...|.+|.... ..+ +.-+-..+|+|++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 466777799999984 4577778899999998873211 111 1234468998875
No 319
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=46.14 E-value=64 Score=26.27 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=32.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh----c--CCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY----Y--GVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e----k--GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
..+.+|+.++|+.|.+....+.. . +-.+....++......+. .-+-..+|++++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 46778888999999988765543 2 233445555533222221 234467887753
No 320
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=45.82 E-value=40 Score=30.17 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
..-+..|+.++|+.|+.+...|++ .++.+ +.+|....+++. -.+-..+|++..
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f--~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKF--IKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEE--EEEEcccCHHHHHHCCCccCCEEEE
Confidence 345666777999999988876644 34444 444433333332 245667887654
No 321
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=45.39 E-value=31 Score=30.47 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=26.1
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH-----cCCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~-----~gi~y~~v~V~ 581 (586)
..-|..|..+||+.|......|++ .++.|-.+|++
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~ 64 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE 64 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch
Confidence 345678899999999998877754 35667677664
No 322
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.17 E-value=21 Score=34.93 Aligned_cols=20 Identities=20% Similarity=0.619 Sum_probs=17.2
Q ss_pred eEEEEccCCChhHHHHHHHH
Q psy2688 549 KITLFQYPTCPFCCKVRAFL 568 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L 568 (586)
.+.|+..++|+||.+.|.-+
T Consensus 45 lllmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 45 LLLMFESNGCSYCERFKKDL 64 (182)
T ss_pred EEEEEcCCCChHHHHHHHhh
Confidence 58899999999999887654
No 323
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=45.10 E-value=41 Score=28.76 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=29.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHH----hcCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLD----YYGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~----ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
.-+..|+.+||+.|++..-.++ ..+=......+|....+++. ..+-..+|.+.+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 3466688899999998764443 22112333444433333332 245667887653
No 324
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=44.97 E-value=19 Score=32.15 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=25.5
Q ss_pred ccccccccccccccccccCCCCCCCCeEEEEccCCChhHHHHHHHHHH
Q psy2688 523 KINGKTMNKIIIPIMWVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.+++.++.++|. +....-+..|..+|||.|......+++
T Consensus 5 ~l~~~~f~~~i~---------~~~~~vvV~f~a~wC~~C~~~~~~~~~ 43 (114)
T cd02992 5 VLDAASFNSALL---------GSPSAWLVEFYASWCGHCRAFAPTWKK 43 (114)
T ss_pred ECCHHhHHHHHh---------cCCCeEEEEEECCCCHHHHHHhHHHHH
Confidence 345566665552 212356788899999999987666543
No 325
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=44.96 E-value=22 Score=31.05 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=23.3
Q ss_pred CeEEEEccCCChhHHHHHHHHHHc-----CCceEEEEe
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEV 580 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V 580 (586)
.-+..|..+|||.|.+..-.|++. ++.+-.+|.
T Consensus 20 ~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~ 57 (100)
T cd02999 20 YTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEE 57 (100)
T ss_pred EEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEEC
Confidence 357888999999999988666443 455544444
No 326
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=44.49 E-value=23 Score=30.30 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=23.3
Q ss_pred CeEEEEccCCChhHHHHHHHHHHc-----C-CceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYY-----G-VSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~-----g-i~y~~v~V~ 581 (586)
.-+..|..+|||.|...+..+++. | +.+-.+|++
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~ 59 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG 59 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC
Confidence 457788899999999887766433 2 344555553
No 327
>KOG0911|consensus
Probab=44.34 E-value=12 Score=38.41 Aligned_cols=32 Identities=34% Similarity=0.602 Sum_probs=28.5
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEe--cCCCCC
Q psy2688 555 YPTCPFCCKVRAFLDYYGVSYDIVEV--NAVLRQ 586 (586)
Q Consensus 555 ~~~CPfC~kak~~L~~~gi~y~~v~V--~p~~r~ 586 (586)
.+.|.|-.++-..|+.+||+|+..|| |.+.||
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRq 184 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQ 184 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHH
Confidence 46799999999999999999999999 766664
No 328
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=43.87 E-value=23 Score=30.76 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.9
Q ss_pred eEEEEccCCChhHHHHHHHHH
Q psy2688 549 KITLFQYPTCPFCCKVRAFLD 569 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~ 569 (586)
-+..|..+||++|.+....++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~ 41 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFE 41 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHH
Confidence 577888999999999987775
No 329
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=43.85 E-value=45 Score=31.86 Aligned_cols=35 Identities=20% Similarity=0.605 Sum_probs=25.2
Q ss_pred CCeEEEEccCCChhHHHHHHHH----HHcCCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFL----DYYGVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L----~~~gi~y~~v~V~ 581 (586)
...|..|-.+|||+|.+..-.| +++|+.+--+++|
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 3458888889999999766555 4557766666664
No 330
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=43.51 E-value=30 Score=28.93 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHh-----cCC-CeEEEEecccchhhhc-cCCCceeeEEE
Q psy2688 110 TGLKITLFQYPTCPFCCKVRAFLDY-----YGV-SYDIVEVNAVLRQQIK-WSSYKKVPILL 164 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~~L~e-----kGI-~YE~v~Vd~~~~~~l~-~sp~gkVPvL~ 164 (586)
....+.+|+.++|+.|++.+..+.. .+- .+....+|......+. ..+...+|.++
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIK 74 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEE
Confidence 3446788999999999986544432 221 1333333322222222 23456689774
No 331
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=43.44 E-value=67 Score=27.94 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=29.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEeccc-chhhhc-cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAV-LRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~-~~~~l~-~sp~gkVPvL~i 165 (586)
-+..|+.+|||+|+...-.|++ .++.+ ..+|.. ..+.+. .-+-..+|++.+
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~--~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRH--LAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCce--EEEECCCCCHHHHHhcCCeecCEEEE
Confidence 4666788999999988755533 34433 334432 222222 234567886653
No 332
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=42.44 E-value=20 Score=37.36 Aligned_cols=63 Identities=21% Similarity=0.472 Sum_probs=37.0
Q ss_pred ccccccchhhcccccccchhhccccCCCCCCCCcEEEEEcCCChhHHHHHHHHH----hcC-CCeEEEEecccchhhhcc
Q psy2688 80 EGIKVSRKVCTKLLLCTLENMFQVVVPEDTTGLKITLFQYPTCPFCCKVRAFLD----YYG-VSYDIVEVNAVLRQQIKW 154 (586)
Q Consensus 80 ~~~~vs~~~c~~~~~~~~~~m~~~~~p~~~~~~~I~LY~~~~cPfC~KVR~~L~----ekG-I~YE~v~Vd~~~~~~l~~ 154 (586)
.++|||.. -+.|+.+ ..|.+-+..+||+|+..||.|- +.| +.++...-++ .
T Consensus 45 ~~~kvsn~---------------d~~~~Gk--~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~ 100 (249)
T PF06053_consen 45 NFFKVSNQ---------------DLAPNGK--PEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------Y 100 (249)
T ss_pred ceeeecCc---------------ccCCCCe--eEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------c
Confidence 35888887 3344442 2466667899999999997553 333 3444433333 1
Q ss_pred CCCceeeEEEEc
Q psy2688 155 SSYKKVPILLVK 166 (586)
Q Consensus 155 sp~gkVPvL~id 166 (586)
.....+|.|...
T Consensus 101 d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 101 DNYPNTPTLIFN 112 (249)
T ss_pred cCCCCCCeEEEe
Confidence 234556666554
No 333
>KOG2824|consensus
Probab=42.41 E-value=32 Score=36.34 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCeEEEEccC------CChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 547 GLKITLFQYP------TCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 547 ~~~I~lY~~~------~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
...|+||+|. |=--|..||+.|+..+|-|+|.||+.
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSM 171 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSM 171 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccc
Confidence 3489999875 45689999999999999999999943
No 334
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=42.36 E-value=39 Score=31.12 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.2
Q ss_pred CeEEEEcc-------CCChhHHHHHHHH----HHc--CCceEEEEec
Q psy2688 548 LKITLFQY-------PTCPFCCKVRAFL----DYY--GVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~-------~~CPfC~kak~~L----~~~--gi~y~~v~V~ 581 (586)
+-|..|.. +|||.|.+++-.| ++. ++.|-.|+|+
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd 69 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVG 69 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcC
Confidence 34666666 8999999776544 443 3677777774
No 335
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.32 E-value=26 Score=29.82 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=23.4
Q ss_pred eEEEEccCCChhHHHHHHHHHHc-------CCceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYY-------GVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~-------gi~y~~v~V 580 (586)
-+..|..+|||.|.+....+++. +|.+-.+|+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~ 57 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDV 57 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEc
Confidence 58889999999999877666432 455566665
No 336
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=42.21 E-value=63 Score=29.81 Aligned_cols=63 Identities=13% Similarity=0.265 Sum_probs=37.0
Q ss_pred EEEEEcCCChhHHHHHH-------HHHhcCCCeEEEEecccchhhhc---------cCCCceeeEEEEccCCCcEEecCh
Q psy2688 114 ITLFQYPTCPFCCKVRA-------FLDYYGVSYDIVEVNAVLRQQIK---------WSSYKKVPILLVKVPNGYQQMNDS 177 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~-------~L~ekGI~YE~v~Vd~~~~~~l~---------~sp~gkVPvL~idg~dG~~~I~eS 177 (586)
+..|+..+|++|++... ..+...=.|..+.+|....+++. ..+.+-+|++++=+.+| +.+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G-~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL-KPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEeee
Confidence 44467799999998742 22232336888888753333221 24567789776543355 555544
No 337
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=41.28 E-value=30 Score=31.15 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=18.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHH
Q psy2688 110 TGLKITLFQYPTCPFCCKVRAFLD 133 (586)
Q Consensus 110 ~~~~I~LY~~~~cPfC~KVR~~L~ 133 (586)
++..|..|.-+.||+|++..-.+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~ 28 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELE 28 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHH
Confidence 355788888899999998865443
No 338
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=40.82 E-value=32 Score=29.79 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH----cC---CceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY----YG---VSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~----~g---i~y~~v~V~ 581 (586)
.+-|..|..+|||.|.+....|+. .+ +.+-.+++|
T Consensus 18 ~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 18 GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 456889999999999988766643 22 445555554
No 339
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=40.64 E-value=42 Score=30.21 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEccCCChhHHHH-------HHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCKV-------RAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~ka-------k~~L~~~gi~y~~v~V 580 (586)
|..|...+||+|.+- ..-++..|+.+--|..
T Consensus 28 l~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~ 65 (149)
T cd02970 28 VVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGP 65 (149)
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeC
Confidence 333467899999873 3333445665544443
No 340
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=40.13 E-value=34 Score=29.21 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=23.5
Q ss_pred CeEEEEccCCChhHHHHHHHHHHc------CCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~~------gi~y~~v~V~ 581 (586)
.-+..|..+||+.|.+....+++. ++.+-.+|++
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~ 60 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ 60 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 567788889999999876655422 3556666653
No 341
>PHA02278 thioredoxin-like protein
Probab=40.10 E-value=89 Score=27.73 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc------CCCeEEEEecccc--hhhhc-cCCCceeeEEEE
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYY------GVSYDIVEVNAVL--RQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ek------GI~YE~v~Vd~~~--~~~l~-~sp~gkVPvL~i 165 (586)
..-+.-|+.+||+.|+...-.++.. .+++-.+++|... .+++. .-.-..+|++.+
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 3345557779999999877554332 2345555555321 12232 345566887654
No 342
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=39.98 E-value=43 Score=32.14 Aligned_cols=45 Identities=16% Similarity=0.382 Sum_probs=37.8
Q ss_pred cccCCCCCCCCeEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 538 WVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 538 ~~~~~~~~~~~~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
+..-++.+...++++|-.++|.=|..=-+.|+.+|...++++.++
T Consensus 16 ~~~~~~~a~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d 60 (149)
T COG3019 16 GSTGPAQAQATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD 60 (149)
T ss_pred hcccchhcceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc
Confidence 345667777778999999999999999999999998888877644
No 343
>PF13728 TraF: F plasmid transfer operon protein
Probab=39.66 E-value=35 Score=34.38 Aligned_cols=33 Identities=30% Similarity=0.692 Sum_probs=26.1
Q ss_pred eEEEEccCCChhHHH----HHHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCK----VRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~k----ak~~L~~~gi~y~~v~V~ 581 (586)
.+.+|-.++||||.+ ++.|-+++|++...|.+|
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 466777789999976 566777889988888885
No 344
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=39.15 E-value=85 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=29.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc-----C-CCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYY-----G-VSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ek-----G-I~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
..+.+|+.++|++|....-.++.. + ..+....+|.... ++. ......+|.+.+
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 356678889999999876544332 2 1244444443221 122 122378897764
No 345
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=39.08 E-value=99 Score=25.47 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=30.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh----cCCCeEEEEecccchhhh-ccCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY----YGVSYDIVEVNAVLRQQI-KWSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e----kGI~YE~v~Vd~~~~~~l-~~sp~gkVPvL~i 165 (586)
.-+..|+.++|+.|+.....|+. .+-......+|.....++ ..-+...+|.+++
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~ 74 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLL 74 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 34556777999999988755543 221244444443222222 2235567897764
No 346
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=38.88 E-value=1.1e+02 Score=26.42 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=31.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEecccc-hhhhc-cCCCceeeEEEEccCCC
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAVL-RQQIK-WSSYKKVPILLVKVPNG 170 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~~-~~~l~-~sp~gkVPvL~idg~dG 170 (586)
.-+..|+.+||+.|+...-.|.. .++.+-.+.+|... ..++. ..+-..+|++++-. +|
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~-~G 81 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK-DG 81 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe-CC
Confidence 34556778999999977755543 24444444443221 11222 23456688776543 45
No 347
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=38.84 E-value=24 Score=33.18 Aligned_cols=18 Identities=11% Similarity=0.445 Sum_probs=14.5
Q ss_pred EEEEccCCChhHHHHHHH
Q psy2688 550 ITLFQYPTCPFCCKVRAF 567 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~ 567 (586)
+.++...|||+|.+.+..
T Consensus 27 mv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 27 MVIHHLEDCPHSQALKKA 44 (130)
T ss_pred EEEEeCCcCHhHHHHHHH
Confidence 556788999999987764
No 348
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=37.95 E-value=62 Score=29.68 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=29.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCC----eEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYYGVS----YDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ekGI~----YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
-+.-|+.+|||.|+.+.-.|++.--. .....||...-+++. .-+-..+|++..
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~ 74 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMF 74 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEE
Confidence 45558889999999887666432211 223344433333333 245566887754
No 349
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=37.68 E-value=26 Score=28.43 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.0
Q ss_pred ccCCChhHHHHHHHHHHcC------CceEEEEe
Q psy2688 554 QYPTCPFCCKVRAFLDYYG------VSYDIVEV 580 (586)
Q Consensus 554 ~~~~CPfC~kak~~L~~~g------i~y~~v~V 580 (586)
..+|||+|.+....|.+.. +.+..+++
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~ 72 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNV 72 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEEC
Confidence 4999999999977776543 44555554
No 350
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=36.36 E-value=45 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=19.2
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
..-+..|..+||+.|.+....|.+
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~ 36 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLER 36 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHH
Confidence 355788889999999999777654
No 351
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=36.31 E-value=68 Score=28.28 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh-----cCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY-----YGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e-----kGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
.-+..|+.++|+.|..+.-.|+. .++.| ..+|.... ++. .-+-..+|++.+
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f--~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKF--VKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEE--EEEEchhh-HHHHhcCCCcCCEEEE
Confidence 34566788999999988765543 34444 34443222 332 235567887654
No 352
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=36.17 E-value=1.4e+02 Score=28.84 Aligned_cols=80 Identities=14% Similarity=0.306 Sum_probs=53.7
Q ss_pred ccCCCCCCCCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEeccc--chhhhcc-CCCceeeEEEEccCCCcEEecC---
Q psy2688 103 VVVPEDTTGLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAV--LRQQIKW-SSYKKVPILLVKVPNGYQQMND--- 176 (586)
Q Consensus 103 ~~~p~~~~~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~--~~~~l~~-sp~gkVPvL~idg~dG~~~I~e--- 176 (586)
.+.|..+....+.+|..|.|..|..=-..|+.+|+....+..+.. .++.+.+ -.....=+.+++| ..+-+
T Consensus 17 ~~~~~~a~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~G----y~vEGHVP 92 (149)
T COG3019 17 STGPAQAQATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVING----YYVEGHVP 92 (149)
T ss_pred cccchhcceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcC----EEEeccCC
Confidence 445666677789999999999888888899999999998888642 2333443 2233444566654 44433
Q ss_pred hHHHHHHHHh
Q psy2688 177 SSMIVSCLAS 186 (586)
Q Consensus 177 S~aIi~yLae 186 (586)
..+|.+.|++
T Consensus 93 a~aI~~ll~~ 102 (149)
T COG3019 93 AEAIARLLAE 102 (149)
T ss_pred HHHHHHHHhC
Confidence 5677666654
No 353
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=36.13 E-value=1.2e+02 Score=25.45 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=30.3
Q ss_pred CcEEEEEcCCChhHHHHHHHH----HhcC--CCeEEEEecccc--hhhhc-cCCCceeeEEEEcc
Q psy2688 112 LKITLFQYPTCPFCCKVRAFL----DYYG--VSYDIVEVNAVL--RQQIK-WSSYKKVPILLVKV 167 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L----~ekG--I~YE~v~Vd~~~--~~~l~-~sp~gkVPvL~idg 167 (586)
.-+.+|+.+|||.|+...-.+ +... -.+....+|... ...+. ..+-..+|.+++-.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~ 83 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE 83 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe
Confidence 456778889999999875332 2211 223333344322 22222 23556788776543
No 354
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=35.80 E-value=43 Score=34.92 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=23.7
Q ss_pred eEEEEccCCChhHHHHHH----HHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRA----FLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~----~L~~~gi~y~~v~V~ 581 (586)
-|..|..+|||+|.+..- +-+++|+.+-.|++|
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD 205 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVD 205 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCC
Confidence 455677789999997654 556678777777764
No 355
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=35.78 E-value=37 Score=28.59 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=22.2
Q ss_pred eEEEEccCCChhHHHHHHHHHH-----c-CCceEEEEe
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDY-----Y-GVSYDIVEV 580 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~-----~-gi~y~~v~V 580 (586)
-+.+|..+||+.|.+.+..+++ . .+.+-.+|+
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~ 58 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDA 58 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEEC
Confidence 5667778999999998766544 1 345555555
No 356
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=35.63 E-value=69 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=16.6
Q ss_pred cEEEEEcCCChhHHHHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLD 133 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ 133 (586)
-+..|+.+||++|....-.++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~ 41 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFE 41 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHH
Confidence 466778899999998876664
No 357
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=35.58 E-value=85 Score=26.77 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=28.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc----CCCeEEEEecccc--hhhhc-cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDYY----GVSYDIVEVNAVL--RQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ek----GI~YE~v~Vd~~~--~~~l~-~sp~gkVPvL~i 165 (586)
.+..|+.+||++|....-.++.. +-......++-.. ...+. ..+-..+|.+++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 56778889999999775444322 2123333333222 22222 245567887764
No 358
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=35.56 E-value=1.2e+02 Score=25.37 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=28.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cCCCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLDY----YGVSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~e----kGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
-+.+|+.++|+.|+...-.+.. ..-.+....+|.....++. .-+-..+|++.+
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 4666778999999987644432 1112333444432222231 224456887753
No 359
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=35.28 E-value=1e+02 Score=25.78 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=31.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHh----cC--CCeEEEEecccc-hhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDY----YG--VSYDIVEVNAVL-RQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~e----kG--I~YE~v~Vd~~~-~~~l~-~sp~gkVPvL~i 165 (586)
..+..|+.++||.|+...-.+.. .. -.+....+|... ...+. .-+-..+|.+++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 35777888999999977544432 22 235555555333 22222 234567897764
No 360
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=34.54 E-value=58 Score=26.94 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=22.7
Q ss_pred CeEEEEccCCChhHHHHHHHH----HH---cCCceEEEEecC
Q psy2688 548 LKITLFQYPTCPFCCKVRAFL----DY---YGVSYDIVEVNA 582 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L----~~---~gi~y~~v~V~p 582 (586)
.-+.+|...|||.|.+.-..| ++ .++.+-.+++|+
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 457788889999998654333 33 245566666655
No 361
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=34.41 E-value=42 Score=30.49 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=19.3
Q ss_pred EEEEccCCChhHHHHHHH-------HHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAF-------LDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~-------L~~~gi~y~~v~V~ 581 (586)
|.+|.+.|||.|.+---. ...+|+.+-.+.++
T Consensus 33 v~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~ 71 (146)
T PF08534_consen 33 VNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD 71 (146)
T ss_dssp EEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES
T ss_pred EEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc
Confidence 444444599999865532 34456766666553
No 362
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=34.31 E-value=35 Score=28.69 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=16.2
Q ss_pred eEEEEccCCChhHHHHHHHH
Q psy2688 549 KITLFQYPTCPFCCKVRAFL 568 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L 568 (586)
-+..|..+||+.|.+....+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~ 38 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTW 38 (102)
T ss_pred EEEEEECCCCHHHHHhCHHH
Confidence 67788899999999875544
No 363
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=33.36 E-value=1e+02 Score=28.32 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=28.9
Q ss_pred cEEEEEc-------CCChhHHHHHHH----HHhcC--CCeEEEEeccc-----chhhhccC-CC-ceeeEEEEc
Q psy2688 113 KITLFQY-------PTCPFCCKVRAF----LDYYG--VSYDIVEVNAV-----LRQQIKWS-SY-KKVPILLVK 166 (586)
Q Consensus 113 ~I~LY~~-------~~cPfC~KVR~~----L~ekG--I~YE~v~Vd~~-----~~~~l~~s-p~-gkVPvL~id 166 (586)
.+..|.. +|||.|+.+.-. .++.. +.+-.+.++.. ....++.. .- ..+|++..=
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~ 97 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRW 97 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEE
Confidence 4556777 899999977543 33333 44444444321 11233321 22 479988643
No 364
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=33.11 E-value=44 Score=30.21 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=25.3
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHcC------CceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYYG------VSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~g------i~y~~v~V~ 581 (586)
..-+..|..+||+.|.+.+-.+++.. +.+-.||++
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d 70 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW 70 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 44688899999999999877666542 455556653
No 365
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=32.60 E-value=49 Score=26.82 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=17.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q psy2688 114 ITLFQYPTCPFCCKVRAFLDYY 135 (586)
Q Consensus 114 I~LY~~~~cPfC~KVR~~L~ek 135 (586)
|.+|.-+.||+|+...-.|...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4578889999999988777654
No 366
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=32.46 E-value=1.1e+02 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=29.2
Q ss_pred cEEEEEcCCChhHHHHHHHHH-----hcC--CCeEEEEecccchhhh-ccCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCKVRAFLD-----YYG--VSYDIVEVNAVLRQQI-KWSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~-----ekG--I~YE~v~Vd~~~~~~l-~~sp~gkVPvL~i 165 (586)
.+..|+.+||+.|+...-.++ ..+ -.+....+|......+ ...+-..+|.+++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 566788899999997754332 223 1344444443222222 1234567887654
No 367
>KOG0907|consensus
Probab=32.09 E-value=50 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=24.7
Q ss_pred EEEEccCCChhHHHHHHHHHHc-----CCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V~ 581 (586)
|.-|+.+||+.|...+=++.+. ++.|-.+|||
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvd 61 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVD 61 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecc
Confidence 5558999999999998887665 4556677776
No 368
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=31.94 E-value=72 Score=31.65 Aligned_cols=32 Identities=25% Similarity=0.618 Sum_probs=21.8
Q ss_pred EEEEEcCCChhHHHH----HHHHHhcCCCeEEEEec
Q psy2688 114 ITLFQYPTCPFCCKV----RAFLDYYGVSYDIVEVN 145 (586)
Q Consensus 114 I~LY~~~~cPfC~KV----R~~L~ekGI~YE~v~Vd 145 (586)
+.+|...|||+|++. +.+.++.|+.+-.+.+|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 667888999999987 44555557555444444
No 369
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=31.78 E-value=56 Score=31.27 Aligned_cols=34 Identities=9% Similarity=0.223 Sum_probs=24.4
Q ss_pred CeEEEEccCCChhHHHHHHHHHH-------cCCceEEEEec
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY-------YGVSYDIVEVN 581 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~-------~gi~y~~v~V~ 581 (586)
.-|..|..+|||.|......|++ .++.+-.+|++
T Consensus 49 ~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd 89 (152)
T cd02962 49 TWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG 89 (152)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence 45788888999999988865532 23666667763
No 370
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=31.36 E-value=63 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=17.5
Q ss_pred EEEEccCCChhHHH-------HHHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCK-------VRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~k-------ak~~L~~~gi~y~~v~V 580 (586)
|.+|...+||.|.. ..+-+..+|+.+--+.+
T Consensus 28 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~ 65 (140)
T cd03017 28 LYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSP 65 (140)
T ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34444678999975 33334555665444333
No 371
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=31.24 E-value=38 Score=27.22 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=21.2
Q ss_pred EEEEccCCChhHHHHHHHHHHcCCceEEEEe
Q psy2688 550 ITLFQYPTCPFCCKVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V 580 (586)
+++|++..=--+..+|.+|++.||++...+-
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 5788888888899999999999999877643
No 372
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=30.90 E-value=67 Score=29.14 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEEccCCChhHHHHHH-------HHHHcCCceEEEEec
Q psy2688 550 ITLFQYPTCPFCCKVRA-------FLDYYGVSYDIVEVN 581 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~-------~L~~~gi~y~~v~V~ 581 (586)
|.+|...|||.|.+.-. -+..+|+.+--|.+|
T Consensus 33 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 33 LVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 34445789999985432 233446654444443
No 373
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=30.57 E-value=69 Score=31.18 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred CeecCCC-CChhhhhHHHHHHhhhh
Q psy2688 373 PFFGGQK-PNLADLAVYGVLSSIEG 396 (586)
Q Consensus 373 pFL~Gd~-pTlAD~av~g~L~~l~~ 396 (586)
.|++|+. ||-.|+.++|.|..+..
T Consensus 131 ~~~f~~~~psslD~L~~ayL~l~l~ 155 (168)
T PF11801_consen 131 RYFFGDSKPSSLDCLAFAYLALLLV 155 (168)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhc
Confidence 7888877 99999999999998753
No 374
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=30.17 E-value=53 Score=30.02 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHH
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFL 132 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L 132 (586)
+..|++|.-..||+|++....+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHH
Confidence 4578999999999999986555
No 375
>PTZ00102 disulphide isomerase; Provisional
Probab=29.85 E-value=51 Score=36.20 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=27.5
Q ss_pred ccccccccccccccccccCCCCCCCCeEEEEccCCChhHHHHHHHHHH
Q psy2688 523 KINGKTMNKIIIPIMWVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
+++|++..++++ +....-+..|..+||+.|.+....|.+
T Consensus 361 ~l~~~~f~~~v~---------~~~k~vlv~f~a~wC~~C~~~~p~~~~ 399 (477)
T PTZ00102 361 VVVGNTFEEIVF---------KSDKDVLLEIYAPWCGHCKNLEPVYNE 399 (477)
T ss_pred EecccchHHHHh---------cCCCCEEEEEECCCCHHHHHHHHHHHH
Confidence 467787777643 222345778888999999988776654
No 376
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.73 E-value=84 Score=29.70 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=25.5
Q ss_pred cEEEEEcCCChhHHHHH----HHHHhc-CCCeEEEEecc
Q psy2688 113 KITLFQYPTCPFCCKVR----AFLDYY-GVSYDIVEVNA 146 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR----~~L~ek-GI~YE~v~Vd~ 146 (586)
.|++|.-..||||.... .+++.. ++.++.+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 37889999999999554 455555 88888877764
No 377
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=29.24 E-value=38 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=15.7
Q ss_pred cCCChhHHHHHH----HHHHc--CCceEEEEe
Q psy2688 555 YPTCPFCCKVRA----FLDYY--GVSYDIVEV 580 (586)
Q Consensus 555 ~~~CPfC~kak~----~L~~~--gi~y~~v~V 580 (586)
.+|||.|.+|.- .+... +..+-.+.|
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~V 66 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEV 66 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE-
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEc
Confidence 479999999974 44442 444555555
No 378
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=29.06 E-value=74 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=19.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHH
Q psy2688 109 TTGLKITLFQYPTCPFCCKVRAFLD 133 (586)
Q Consensus 109 ~~~~~I~LY~~~~cPfC~KVR~~L~ 133 (586)
..+..|..|.-..||+|++..-.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHH
Confidence 3455688888899999998876554
No 379
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=28.61 E-value=47 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.675 Sum_probs=16.9
Q ss_pred CeEEEEccCCChhHHHHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.-|..|-.+|||.|.+....|++
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHH
Confidence 34666778999999987655544
No 380
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=28.58 E-value=46 Score=30.76 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=13.9
Q ss_pred EEEEccCCChhHHHHHH
Q psy2688 550 ITLFQYPTCPFCCKVRA 566 (586)
Q Consensus 550 I~lY~~~~CPfC~kak~ 566 (586)
+..+...||++|++...
T Consensus 19 ll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 19 FLSIGYSTCHWCHVMEH 35 (124)
T ss_pred EEEEccCCCHhHHHHHH
Confidence 45588999999998864
No 381
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=27.51 E-value=75 Score=33.07 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=25.9
Q ss_pred eEEEEccCCChhHHH----HHHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCK----VRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~k----ak~~L~~~gi~y~~v~V~ 581 (586)
.+.+|-...||||.+ +++|=+++|++.-.|.+|
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~D 182 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVD 182 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 455666688999986 678888899988888774
No 382
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=27.10 E-value=1.2e+02 Score=29.52 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=28.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhcC---CCeEEEEecccchhhhc-cCCCceeeEEEE
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYYG---VSYDIVEVNAVLRQQIK-WSSYKKVPILLV 165 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ekG---I~YE~v~Vd~~~~~~l~-~sp~gkVPvL~i 165 (586)
.-|..|+.+|||.|..+.-.|+..- -....+.|+.... .+. .-+-..||+|.+
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlll 141 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLV 141 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEE
Confidence 3455567799999997654443221 1233344443221 222 245667897754
No 383
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.05 E-value=1.1e+02 Score=31.44 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhcCCCeEEEEecccchhhhc-cCCCceeeEEEEccCCCcEEe---cChHHHHHHH
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKVPNGYQQM---NDSSMIVSCL 184 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ekGI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg~dG~~~I---~eS~aIi~yL 184 (586)
.++|++|...+|-.|...--.|+.||+-=....++......+. -++--.||.+++|| ..+. .|-..|.+.|
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DG---el~~~dpVdp~~ies~~ 84 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDG---ELVYADPVDPEEIESIL 84 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcC---eEEEcCCCCHHHHHHHH
Confidence 4579999999999999999999999985443333322222222 24566799999975 2333 2456665544
No 384
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=26.88 E-value=2.9e+02 Score=26.37 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=41.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHhcCCC--eEEEEecccchhh-hcc---CCCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 109 TTGLKITLFQYPTCPFCCKVRAFLDYYGVS--YDIVEVNAVLRQQ-IKW---SSYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 109 ~~~~~I~LY~~~~cPfC~KVR~~L~ekGI~--YE~v~Vd~~~~~~-l~~---sp~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
.+++.+.+| -.-||.|....-+|..+.-. ++...+..+.+.. +.. .+....=++.++ +++.+.+|+|+++
T Consensus 6 ~~p~~vvly-DG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~---~g~~~~~sdA~~~ 81 (137)
T COG3011 6 KKPDLVVLY-DGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVE---AGQLLVGSDAAIR 81 (137)
T ss_pred CCCCEEEEE-CCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEec---CCceEeccHHHHH
Confidence 334444444 56799999877777666444 4444443333322 222 223222333433 2499999999998
Q ss_pred HHH
Q psy2688 183 CLA 185 (586)
Q Consensus 183 yLa 185 (586)
-+.
T Consensus 82 i~~ 84 (137)
T COG3011 82 ILR 84 (137)
T ss_pred HHH
Confidence 664
No 385
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=26.75 E-value=77 Score=28.27 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=17.7
Q ss_pred EccCCChhHHHHHH-------HHHHcCCceEEEEec
Q psy2688 553 FQYPTCPFCCKVRA-------FLDYYGVSYDIVEVN 581 (586)
Q Consensus 553 Y~~~~CPfC~kak~-------~L~~~gi~y~~v~V~ 581 (586)
|...+||.|...-. -|+..|+.+-.+.+|
T Consensus 30 ~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 30 YPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44679999987422 233467666555553
No 386
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=26.51 E-value=79 Score=33.02 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=26.1
Q ss_pred eEEEEccCCChhHHH----HHHHHHHcCCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCK----VRAFLDYYGVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~k----ak~~L~~~gi~y~~v~V~ 581 (586)
.+.+|-...||||.+ +++|=+++|++...|.+|
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~D 189 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVD 189 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 455666689999997 567778999998888885
No 387
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=26.43 E-value=62 Score=34.95 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=29.3
Q ss_pred cccccccccccccccccccCCCCCCCCeEEEEccCCChhHHHHHHHHHH
Q psy2688 522 LKINGKTMNKIIIPIMWVVVPEDTTGLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.+++|++.++++. +....-+..|..+||+.|......+.+
T Consensus 349 ~~l~~~~f~~~v~---------~~~~~vlv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 349 KVLVGKNFDEIVL---------DETKDVLVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEeeCcCHHHHhc---------cCCCeEEEEEECCCCHhHHHHHHHHHH
Confidence 4678888888763 122446888999999999987666654
No 388
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=26.08 E-value=1.4e+02 Score=31.16 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=36.0
Q ss_pred cEEEEEcCCChhHHH----HHHHHHhcCCCeEEEEecccchhhh----------ccCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCK----VRAFLDYYGVSYDIVEVNAVLRQQI----------KWSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~K----VR~~L~ekGI~YE~v~Vd~~~~~~l----------~~sp~gkVPvL~i 165 (586)
-+.+|....||+|.+ ++.+-+..|++.-.+.+|....+++ ..-+...+|.|++
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 466677789999994 5678889999998888874222221 1123467888875
No 389
>PHA03075 glutaredoxin-like protein; Provisional
Probab=25.33 E-value=98 Score=28.92 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=30.0
Q ss_pred eEEEEccCCChhHHHHHHHHHHcCCceEEEEecC
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~gi~y~~v~V~p 582 (586)
-+.++..+.|+-|.-+.+.|++.-=.|+...||-
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 5789999999999999999988888888888753
No 390
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=25.26 E-value=1.9e+02 Score=30.24 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=31.7
Q ss_pred cEEEEEcCCChhHHHHHH----HHHhcCCCeEEEEecccch---------hhh-ccCCCceeeEEEEc
Q psy2688 113 KITLFQYPTCPFCCKVRA----FLDYYGVSYDIVEVNAVLR---------QQI-KWSSYKKVPILLVK 166 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~----~L~ekGI~YE~v~Vd~~~~---------~~l-~~sp~gkVPvL~id 166 (586)
-+..|...+||+|++..- +.+..|+.+-.|.+|.... ..+ ..-+-..+|.+++=
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 345566699999997654 4445676666666653211 111 12355779987654
No 391
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=24.66 E-value=79 Score=33.18 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEccCCChhHHHHHHHHHH-cCCc
Q psy2688 551 TLFQYPTCPFCCKVRAFLDY-YGVS 574 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~-~gi~ 574 (586)
-|+.+..||.+.++|..|++ +||+
T Consensus 168 di~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 168 DLAKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred eeecccCChHHHHHHHHHHHhhCCC
Confidence 48999999999999999999 7886
No 392
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=24.46 E-value=1.4e+02 Score=31.34 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=35.8
Q ss_pred cEEEEEcCCChhHHH----HHHHHHhcCCCeEEEEecccchhhhc----------cCCCceeeEEEE
Q psy2688 113 KITLFQYPTCPFCCK----VRAFLDYYGVSYDIVEVNAVLRQQIK----------WSSYKKVPILLV 165 (586)
Q Consensus 113 ~I~LY~~~~cPfC~K----VR~~L~ekGI~YE~v~Vd~~~~~~l~----------~sp~gkVPvL~i 165 (586)
.+.+|....||+|.+ ++.+-+..||+...|.+|....+.+. .-+...+|+|+.
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 466667789999995 45677889999999988743221111 124567898875
No 393
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=24.45 E-value=1.7e+02 Score=27.92 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=15.9
Q ss_pred cEEEEEcCCChhHHHHHHHHH
Q psy2688 113 KITLFQYPTCPFCCKVRAFLD 133 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~L~ 133 (586)
-+..|+.+|||.|....-.++
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~ 70 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFA 70 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 466788899999997765443
No 394
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.17 E-value=2.3e+02 Score=24.81 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=38.6
Q ss_pred EEcCCChhHHHHHHHHHhcCC--CeEEEEecccchhh----hccCC--CceeeEEEEccCCCcEEecChHHHHHHH
Q psy2688 117 FQYPTCPFCCKVRAFLDYYGV--SYDIVEVNAVLRQQ----IKWSS--YKKVPILLVKVPNGYQQMNDSSMIVSCL 184 (586)
Q Consensus 117 Y~~~~cPfC~KVR~~L~ekGI--~YE~v~Vd~~~~~~----l~~sp--~gkVPvL~idg~dG~~~I~eS~aIi~yL 184 (586)
|.-..||+|......+...+- .++.+.+......+ ..+++ ..+.-.+ ++ +|..+..++.|+...+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~g~~~~~G~~A~~~l~ 74 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-ID--DGERVYRGSDAVLRLL 74 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ec--CCCEEEEcHHHHHHHH
Confidence 445689999999988887765 46666662212111 12221 2333333 22 3435999999998755
No 395
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.01 E-value=81 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.8
Q ss_pred EEEccCCChhHHHHHHHHHHcCCce
Q psy2688 551 TLFQYPTCPFCCKVRAFLDYYGVSY 575 (586)
Q Consensus 551 ~lY~~~~CPfC~kak~~L~~~gi~y 575 (586)
-||.+..||.+.++|..|+++|+..
T Consensus 149 di~~t~~~pla~~~R~~Lrk~~~~~ 173 (231)
T cd00755 149 DISKTSGDPLARKVRKRLRKRGIFF 173 (231)
T ss_pred cEeccccCcHHHHHHHHHHHcCCCC
Confidence 4899999999999999999999963
No 396
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=23.41 E-value=1.6e+02 Score=27.34 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCChhHHHHH----HHHHhc--CCCeEEEEecccc-h----hhhcc---CCCceeeEEEEccCCCcEEecChHHH
Q psy2688 120 PTCPFCCKVR----AFLDYY--GVSYDIVEVNAVL-R----QQIKW---SSYKKVPILLVKVPNGYQQMNDSSMI 180 (586)
Q Consensus 120 ~~cPfC~KVR----~~L~ek--GI~YE~v~Vd~~~-~----~~l~~---sp~gkVPvL~idg~dG~~~I~eS~aI 180 (586)
+|||.|+++. .++... +..+-.+.|+... . ...+. -....||+|.-=+ .+ ..+.|....
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~-~~-~rL~e~e~~ 108 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE-TG-ERLVEEECL 108 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT-SS--EEEHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC-CC-Cccchhhhc
Confidence 6999999887 444443 3334344443211 1 12222 3356789887533 12 455555443
No 397
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=23.36 E-value=3.5e+02 Score=25.76 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEEEcCCChhHHH-------------------------------------HHHHHHhcCCCeEEEEecccchhhhc-cC
Q psy2688 114 ITLFQYPTCPFCCK-------------------------------------VRAFLDYYGVSYDIVEVNAVLRQQIK-WS 155 (586)
Q Consensus 114 I~LY~~~~cPfC~K-------------------------------------VR~~L~ekGI~YE~v~Vd~~~~~~l~-~s 155 (586)
+..|...|||.|++ ++.+++.+|+.|..+.+.......+. .-
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y 108 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQF 108 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHc
Q ss_pred CCceeeEEEEccCCCcEEecChHHHHH
Q psy2688 156 SYKKVPILLVKVPNGYQQMNDSSMIVS 182 (586)
Q Consensus 156 p~gkVPvL~idg~dG~~~I~eS~aIi~ 182 (586)
+...+|.+++=+.+|..+-.+-..+++
T Consensus 109 ~v~~iPt~vlId~~G~Vv~~~~~~~i~ 135 (146)
T cd03008 109 SVEELPTVVVLKPDGDVLAANAVDEIL 135 (146)
T ss_pred CCCCCCEEEEECCCCcEEeeChHHHHH
No 398
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=23.10 E-value=2.3e+02 Score=26.70 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=29.6
Q ss_pred cEEEEEcCCChhHHHHHHH-H------HhcCCCeEEEEecccch-hhhccCCCceeeEEEEccCCC
Q psy2688 113 KITLFQYPTCPFCCKVRAF-L------DYYGVSYDIVEVNAVLR-QQIKWSSYKKVPILLVKVPNG 170 (586)
Q Consensus 113 ~I~LY~~~~cPfC~KVR~~-L------~ekGI~YE~v~Vd~~~~-~~l~~sp~gkVPvL~idg~dG 170 (586)
-+..|+..|||+|.+..-. + +...=.|-.+.++.... ......+ .-+|.++.=+.+|
T Consensus 26 vmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g 90 (130)
T cd02960 26 LMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSL 90 (130)
T ss_pred EEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCC
Confidence 3445778999999987632 2 22222465555543211 2222344 4589765432244
No 399
>KOG3425|consensus
Probab=23.02 E-value=52 Score=30.90 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=0.0
Q ss_pred cCCChhHHHHHHHHHH
Q psy2688 555 YPTCPFCCKVRAFLDY 570 (586)
Q Consensus 555 ~~~CPfC~kak~~L~~ 570 (586)
.+|||.|.+|.-...+
T Consensus 42 qSWCPdCV~AEPvi~~ 57 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINE 57 (128)
T ss_pred CcCCchHHHhhHHHHH
No 400
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=22.73 E-value=88 Score=30.87 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=23.5
Q ss_pred CeEEEEccCCChhHHHHHH-------HHHH--cCCceEEEEe
Q psy2688 548 LKITLFQYPTCPFCCKVRA-------FLDY--YGVSYDIVEV 580 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~-------~L~~--~gi~y~~v~V 580 (586)
+.|+-|..-.||+|.+... +.+. .|+.+..+.+
T Consensus 39 ~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 4699999999999998543 3333 3666766655
No 401
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.51 E-value=87 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCeEEEEccCCChhHH------------HHHHHHHHcCCceEEEEe
Q psy2688 547 GLKITLFQYPTCPFCC------------KVRAFLDYYGVSYDIVEV 580 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~------------kak~~L~~~gi~y~~v~V 580 (586)
+-.|.+.|......+. ...++|+++||+|.++.+
T Consensus 40 G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 40 GFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred CCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 5578888888887777 899999999999999887
No 402
>PRK10996 thioredoxin 2; Provisional
Probab=22.42 E-value=88 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=18.0
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
..-+..|..+|||.|.+....|.+
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~ 76 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFED 76 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHH
Confidence 345778889999999987655543
No 403
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=22.39 E-value=5.7e+02 Score=26.08 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=39.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHhc----CCCeEEEEecccchhhhc-cCCCceeeEEEEccCCCcEEe------cChHHH
Q psy2688 112 LKITLFQYPTCPFCCKVRAFLDYY----GVSYDIVEVNAVLRQQIK-WSSYKKVPILLVKVPNGYQQM------NDSSMI 180 (586)
Q Consensus 112 ~~I~LY~~~~cPfC~KVR~~L~ek----GI~YE~v~Vd~~~~~~l~-~sp~gkVPvL~idg~dG~~~I------~eS~aI 180 (586)
.-+..|+.+|||+|+...-.+++. +=......+|....+++. .-+-..+|++.+=. +| ..+ .....|
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~-~G-~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFD-KG-KMYQYEGGDRSTEKL 131 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEE-CC-EEEEeeCCCCCHHHH
Confidence 346678889999999876554332 212333344432222222 23456678665322 34 322 235667
Q ss_pred HHHHHhhh
Q psy2688 181 VSCLASYL 188 (586)
Q Consensus 181 i~yLaeyL 188 (586)
.+++.+.+
T Consensus 132 ~~fi~~~~ 139 (224)
T PTZ00443 132 AAFALGDF 139 (224)
T ss_pred HHHHHHHH
Confidence 77666554
No 404
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=22.38 E-value=1.3e+02 Score=28.64 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=19.7
Q ss_pred CeEEEEccCCChhHHHHHHHHH---HcCCceEEEE
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLD---YYGVSYDIVE 579 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~---~~gi~y~~v~ 579 (586)
.-|..|...|||.|.+....|+ ++|+.+-.++
T Consensus 65 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~ 99 (173)
T TIGR00385 65 PVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVD 99 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3466777899999998644433 3354443333
No 405
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=22.20 E-value=1e+02 Score=29.33 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=20.3
Q ss_pred EEEEccCCChhHHHHH-------HHHHHcCCceEEEEecC
Q psy2688 550 ITLFQYPTCPFCCKVR-------AFLDYYGVSYDIVEVNA 582 (586)
Q Consensus 550 I~lY~~~~CPfC~kak-------~~L~~~gi~y~~v~V~p 582 (586)
|..|...+||.|...- .-+...|+.+-.|.+|+
T Consensus 34 l~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 34 LFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3344478999999733 33345677665555554
No 406
>KOG4352|consensus
Probab=21.92 E-value=82 Score=30.62 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=45.7
Q ss_pred eeeeeeeEEEEeecCchhhhhhccccccccccCCCceeeeeeecccCCccccccccccc
Q psy2688 472 VGSALGYAYYTNVSLEPVFNEMANTQPVLESFPEGIKVSRKVVVPEDTTGLKINGKTMN 530 (586)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (586)
-|+++-|+.|.|-+.-+.|.|..+.+..++-+..+= ---+||+..|+-.+..||+.+.
T Consensus 69 ~gFaYEYsL~inGKs~~ky~Ed~~k~~~~W~~t~dg-~~~RivL~kdtm~~w~NG~~l~ 126 (187)
T KOG4352|consen 69 PGFAYEYSLYINGKSHDKYTEDMTKQYRLWLYTDDG-QEYRIVLKKDTMSLWVNGDELR 126 (187)
T ss_pred CCceEEEEEEEcCcchHHHHHHhhhheeEEEEecCC-ceEEEEEeccceeeEEcCcccc
Confidence 367889999999998889999888888777665322 2347889999999999987653
No 407
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=21.42 E-value=1.2e+02 Score=26.93 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=14.8
Q ss_pred eEEEEccCCChhHHHHHHHHH
Q psy2688 549 KITLFQYPTCPFCCKVRAFLD 569 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~ 569 (586)
-+..|..+|||.|.+....|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 355566789999997655543
No 408
>PLN02309 5'-adenylylsulfate reductase
Probab=21.34 E-value=1.2e+02 Score=34.44 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=25.2
Q ss_pred CCeEEEEccCCChhHHHHHHHHHHc-------CCceEEEEec
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDYY-------GVSYDIVEVN 581 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~~-------gi~y~~v~V~ 581 (586)
..-|+.|..+|||+|...+..+++. +|.+-.+|++
T Consensus 366 k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 366 EPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 3468899999999999877665432 4656666655
No 409
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=21.03 E-value=1.2e+02 Score=29.57 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=23.5
Q ss_pred eEEEEccCCChhHHHHHHHHHHc-----CCceEEEEec
Q psy2688 549 KITLFQYPTCPFCCKVRAFLDYY-----GVSYDIVEVN 581 (586)
Q Consensus 549 ~I~lY~~~~CPfC~kak~~L~~~-----gi~y~~v~V~ 581 (586)
-|+-|..+|||.|......|+.. ++.|-.|+++
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d 123 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS 123 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc
Confidence 45667889999999887766433 4667666664
No 410
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=20.97 E-value=1.1e+02 Score=27.54 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHhc
Q psy2688 111 GLKITLFQYPTCPFCCKVRAFLDYY 135 (586)
Q Consensus 111 ~~~I~LY~~~~cPfC~KVR~~L~ek 135 (586)
...+..|+.+||++|+...-.+++.
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~l 54 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQV 54 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHH
Confidence 3356678889999999887666544
No 411
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.93 E-value=98 Score=27.40 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=16.6
Q ss_pred CeEEEEccCCChhHHHHHHHHHH
Q psy2688 548 LKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 548 ~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
.-|..|...|||.|.+....|.+
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~ 49 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMA 49 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHH
Confidence 34677779999999975555433
No 412
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=20.91 E-value=1.2e+02 Score=31.04 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=19.2
Q ss_pred CCeEEEEccCCChhHHHHHHHHHH
Q psy2688 547 GLKITLFQYPTCPFCCKVRAFLDY 570 (586)
Q Consensus 547 ~~~I~lY~~~~CPfC~kak~~L~~ 570 (586)
..-+..|..+|||.|.+.+..+++
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~ 76 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWER 76 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHH
Confidence 456778888999999988777654
Done!