BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2689
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDL--LYCEQEVEA--SDDS 126
K Q ++ RRYG+ GPNG GK+TL+R IA + P+ + +Y E +++ SD S
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTS 512
Query: 127 AVNIVL 132
++ V
Sbjct: 513 VLDFVF 518
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSXXXXXXXXXXXXXXXXXXNHLD 262
L GFT EM SGGW+M+++ NHLD
Sbjct: 532 LIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDL--LYCEQEVEA--SDDS 126
K Q ++ RRYG+ GPNG GK+TL R IA + P+ + +Y E +++ SD S
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTS 512
Query: 127 AVNIVL 132
++ V
Sbjct: 513 VLDFVF 518
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 123
V I +G R+G++GP+G GKTT +R IA L +PS+ +L + ++ V ++
Sbjct: 24 VNINIENGERFGILGPSGAGKTTFMRIIA--GLDVPSTGELYFDDRLVASN 72
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDL--LYCEQEVEA--SDDS 126
K Q ++ RRYG+ GPNG GK+TL R IA + P+ + +Y E +++ SD S
Sbjct: 447 KTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTS 506
Query: 127 AVNIVL 132
++ V
Sbjct: 507 VLDFVF 512
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 123
V I +G R+G++GP+G GKTT +R IA L +PS+ +L + ++ V ++
Sbjct: 24 VNINIENGERFGILGPSGAGKTTFMRIIA--GLDVPSTGELYFDDRLVASN 72
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
+I G +GL+GPNG GKTT LR I+T L PSS
Sbjct: 37 EIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSS 69
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V QI G GL+GP+G GKTT+LR IA
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIA 62
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLR 98
V IASG ++GPNG GK+TLLR
Sbjct: 30 VSLHIASGEMVAIIGPNGAGKSTLLR 55
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 58 VDIKVENF-----SLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 112
V+IK+EN + + + +I G L+GP+G GK+TLL IA + P+S
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA--GIYKPTSGK 59
Query: 113 LLYCEQEV 120
+ + E++V
Sbjct: 60 IYFDEKDV 67
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
K+ QIA G ++ L G NG GKTTLL + A +++L
Sbjct: 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V + +G+ Y +VG NG GKTTLL+ +A
Sbjct: 30 VNAEFETGKIYVVVGKNGSGKTTLLKILA 58
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 69 PCLK-VQKQIASGRRYGLVGPNGHGKTTLL 97
P LK + I G++ LVGP G GKTT++
Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIV 398
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 69 PCL-KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102
P L ++ I G GPNG GKTTLL+ I+T
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+I G G+VGPNG GKTT ++ +A
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLA 333
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G G+VGPNG GK+T ++ +A
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILA 68
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 40/165 (24%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+I G L+GP+G GKTT LR IA L P+ +Y E + A + V V +
Sbjct: 28 EIKDGEFLVLLGPSGCGKTTTLRXIA--GLEEPTR-GQIYIEDNLVADPEKGV-FVPPKE 83
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
++ + + + D+ A +
Sbjct: 84 RDVAXVFQSYALYPHXTVYDNIAFPL---------------------------------- 109
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVS 240
+L+ + + R R + LG T E+ + +E SGG R RV+
Sbjct: 110 -KLRKVPKQEIDKRVREVAEXLGLT-ELLNRKPRELSGGQRQRVA 152
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 58 VDIKVENFS-----LSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V++K+EN + + K+ I G L+GP+G GKTT LR IA
Sbjct: 11 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 59
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+I G G+VGPNG GKTT ++ +A
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLA 389
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA 106
+ G G+VGPNG GKTT ++ +A + +
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP 129
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 58 VDIKVENFS-----LSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V++K+EN + + K+ I G L+GP+G GKTT LR IA
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+I G G+VGPNG GKTT ++ +A
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLA 403
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA 106
+ G G+VGPNG GKTT ++ +A + +
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
+G + ++GPNG GKTTLLR I+ +P S ++ EV
Sbjct: 28 VNGEKVIILGPNGSGKTTLLRAISG---LLPYSGNIFINGMEV 67
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 53 VDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
++ S+ K +NFSL + ++ SG + ++GP G GKT L IA +P S
Sbjct: 2 IEIESLSRKWKNFSLD---NLSLKVESGEYFVILGPTGAGKTLFLELIA--GFHVPDS 54
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLR 98
V + +G+ YG++G +G GK+TL+R
Sbjct: 47 VSLHVPAGQIYGVIGASGAGKSTLIR 72
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLR 98
V + +G+ YG++G +G GK+TL+R
Sbjct: 24 VSLHVPAGQIYGVIGASGAGKSTLIR 49
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLR 98
V + +G+ YG++G +G GK+TL+R
Sbjct: 47 VSLHVPAGQIYGVIGASGAGKSTLIR 72
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 40/156 (25%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
L+GP+G GKTT LR IA L PS +Y ++ A + + V D++ + +
Sbjct: 34 LLGPSGCGKTTTLRMIA--GLEEPSR-GQIYIGDKLVADPEKGI-FVPPKDRDIAMVFQS 89
Query: 145 CSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204
+ + D+ A + +L+ +
Sbjct: 90 YALYPHMTVYDNIAFPL-----------------------------------KLRKVPRQ 114
Query: 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVS 240
+ R R + LG T E+ + +E SGG R RV+
Sbjct: 115 EIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVA 149
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 8/36 (22%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLL 97
+EN S S I+ G+R GL+G G GK+TLL
Sbjct: 37 LENISFS--------ISPGQRVGLLGRTGSGKSTLL 64
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
I G VGP+G GK+TLLR IA L +S DL E+ +
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSGDLFIGEKRM 67
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
I G VGP+G GK+TLLR IA L +S DL E+ +
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSGDLFIGEKRM 67
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLR 98
V + G+ LVGP+G GK+T+LR
Sbjct: 73 VSFTVMPGQTLALVGPSGAGKSTILR 98
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
I G VGP+G GK+TLLR IA L +S DL E+ +
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA--GLETITSGDLFIGEKRM 67
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
++ +G LVGPNG GK+TLL +A
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMA 47
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
++ +G LVGPNG GK+TLL +A
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMA 47
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALA-----IPSSIDLLYCEQEVEASDDSAV 128
G G++GPNG GKTT R + A P L Y Q + + D V
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 179 LERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKE 222
L E+ ++ +R+ +V D + ++ +AAEP I++ +GF +
Sbjct: 372 LADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRH 415
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 76 QIASGRRYGLVGPNGHGKTTLL 97
++ +G LVGPNG GK+TLL
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL 43
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 76 QIASGRRYGLVGPNGHGKTTLL 97
++ +G LVGPNG GK+TLL
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL 43
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 114 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNR 169
+Y ++ + D S N+ + DKNRV +K C+ E+ +S + ++++ NR
Sbjct: 137 IYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCT--ERFVSSPEEVMDVIDEGKANR 190
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVL 163
VLS +K VK L EC K +++E D + N +L
Sbjct: 324 VLSPNKXPVKSLLECVKRKEIELVSDESFNEIL 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,534
Number of Sequences: 62578
Number of extensions: 199457
Number of successful extensions: 734
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 65
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)