Query psy2689
Match_columns 262
No_of_seqs 240 out of 2370
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:41:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 5.2E-43 1.1E-47 289.5 14.4 162 59-262 2-168 (240)
2 KOG0066|consensus 100.0 3.5E-40 7.7E-45 295.8 14.6 225 6-262 214-444 (807)
3 COG1125 OpuBA ABC-type proline 100.0 1E-39 2.2E-44 275.4 13.4 161 59-262 1-167 (309)
4 COG1120 FepC ABC-type cobalami 100.0 6.5E-40 1.4E-44 281.9 11.1 164 59-262 2-170 (258)
5 COG1135 AbcC ABC-type metal io 100.0 1.7E-39 3.6E-44 281.2 13.5 163 59-262 1-173 (339)
6 COG1116 TauB ABC-type nitrate/ 100.0 1.8E-39 3.9E-44 275.0 12.7 155 59-262 3-162 (248)
7 COG1124 DppF ABC-type dipeptid 100.0 7E-39 1.5E-43 269.5 12.9 163 58-262 2-173 (252)
8 COG1136 SalX ABC-type antimicr 100.0 2.3E-38 5.1E-43 267.3 14.1 163 60-262 2-174 (226)
9 COG1127 Ttg2A ABC-type transpo 100.0 3E-38 6.4E-43 264.9 13.6 167 57-262 6-177 (263)
10 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.3E-38 9.3E-43 269.4 11.2 164 58-262 3-171 (254)
11 COG3638 ABC-type phosphate/pho 100.0 1.8E-37 3.8E-42 259.6 13.1 171 58-262 2-179 (258)
12 COG3839 MalK ABC-type sugar tr 100.0 8.8E-38 1.9E-42 278.2 12.0 158 59-262 3-165 (338)
13 COG3842 PotA ABC-type spermidi 100.0 5.9E-38 1.3E-42 280.6 10.7 159 59-262 5-168 (352)
14 COG2884 FtsE Predicted ATPase 100.0 2.4E-37 5.1E-42 250.9 10.1 163 59-262 1-169 (223)
15 COG4555 NatA ABC-type Na+ tran 100.0 4E-37 8.7E-42 251.7 10.1 159 59-262 1-165 (245)
16 TIGR00960 3a0501s02 Type II (G 100.0 2E-35 4.4E-40 251.1 15.1 162 60-262 2-170 (216)
17 COG1131 CcmA ABC-type multidru 100.0 1.4E-35 3.1E-40 262.9 14.5 159 59-262 4-168 (293)
18 cd03261 ABC_Org_Solvent_Resist 100.0 1.9E-35 4.1E-40 254.4 13.6 163 60-262 1-168 (235)
19 TIGR02314 ABC_MetN D-methionin 100.0 2.1E-35 4.6E-40 266.7 13.7 162 60-262 2-172 (343)
20 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-35 2.4E-40 257.0 10.0 161 59-262 2-169 (345)
21 cd03259 ABC_Carb_Solutes_like 100.0 7.1E-35 1.5E-39 247.2 13.7 156 61-262 2-162 (213)
22 PRK13537 nodulation ABC transp 100.0 6.8E-35 1.5E-39 260.3 14.0 159 59-262 7-170 (306)
23 COG0411 LivG ABC-type branched 100.0 1.4E-35 3.1E-40 249.6 8.8 169 59-262 4-181 (250)
24 TIGR02673 FtsE cell division A 100.0 1.6E-34 3.4E-39 245.2 15.2 162 60-262 2-169 (214)
25 COG1117 PstB ABC-type phosphat 100.0 9.1E-35 2E-39 239.9 12.6 165 58-262 6-181 (253)
26 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-34 2.7E-39 247.0 13.8 158 60-262 1-163 (220)
27 COG4598 HisP ABC-type histidin 100.0 1.1E-34 2.3E-39 233.8 12.2 173 59-262 6-184 (256)
28 PRK11650 ugpC glycerol-3-phosp 100.0 8.6E-35 1.9E-39 264.3 13.1 158 59-262 3-166 (356)
29 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-34 2.9E-39 246.3 13.3 162 61-262 2-172 (218)
30 cd03260 ABC_PstB_phosphate_tra 100.0 2.5E-34 5.5E-39 246.1 15.1 160 60-262 1-173 (227)
31 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-34 3.3E-39 257.9 14.1 160 58-262 3-167 (303)
32 cd03225 ABC_cobalt_CbiO_domain 100.0 2.4E-34 5.2E-39 243.5 14.6 148 72-262 19-166 (211)
33 PLN03073 ABC transporter F fam 100.0 2.9E-33 6.4E-38 273.7 23.9 195 55-262 173-376 (718)
34 cd03262 ABC_HisP_GlnQ_permease 100.0 2.1E-34 4.6E-39 244.1 13.9 161 61-262 2-167 (213)
35 COG1137 YhbG ABC-type (unclass 100.0 2E-35 4.3E-40 241.5 7.1 162 59-262 4-171 (243)
36 PRK10908 cell division protein 100.0 3.4E-34 7.4E-39 244.6 15.0 162 60-262 2-169 (222)
37 PRK13536 nodulation factor exp 100.0 1.7E-34 3.7E-39 260.9 13.6 160 58-262 40-204 (340)
38 cd03292 ABC_FtsE_transporter F 100.0 4.1E-34 8.8E-39 242.5 15.0 161 61-262 2-168 (214)
39 cd03264 ABC_drug_resistance_li 100.0 2.9E-34 6.2E-39 243.2 13.7 157 60-262 1-162 (211)
40 TIGR02211 LolD_lipo_ex lipopro 100.0 3E-34 6.6E-39 244.6 13.8 163 60-262 2-173 (221)
41 cd03301 ABC_MalK_N The N-termi 100.0 3E-34 6.5E-39 243.3 13.4 157 60-262 1-162 (213)
42 TIGR03265 PhnT2 putative 2-ami 100.0 2.2E-34 4.7E-39 261.4 13.3 158 59-262 4-166 (353)
43 PRK11153 metN DL-methionine tr 100.0 2.4E-34 5.2E-39 260.6 13.5 162 60-262 2-172 (343)
44 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-34 3.9E-39 232.7 11.3 156 60-262 2-161 (231)
45 PRK11432 fbpC ferric transport 100.0 2.9E-34 6.2E-39 260.3 13.9 158 59-262 6-168 (351)
46 TIGR03522 GldA_ABC_ATP gliding 100.0 3.3E-34 7.1E-39 255.5 14.0 159 59-262 2-165 (301)
47 PRK11831 putative ABC transpor 100.0 4.8E-34 1E-38 250.6 14.3 164 59-262 7-175 (269)
48 cd03266 ABC_NatA_sodium_export 100.0 3.9E-34 8.5E-39 243.4 13.2 158 60-262 2-168 (218)
49 cd03269 ABC_putative_ATPase Th 100.0 3.5E-34 7.6E-39 242.5 12.4 155 60-262 1-160 (210)
50 TIGR02315 ABC_phnC phosphonate 100.0 4.2E-34 9.1E-39 247.0 13.1 169 60-262 2-177 (243)
51 cd03219 ABC_Mj1267_LivG_branch 100.0 4E-34 8.8E-39 246.1 12.9 159 61-262 2-175 (236)
52 PRK11264 putative amino-acid A 100.0 7.2E-34 1.6E-38 246.7 14.5 169 59-262 3-176 (250)
53 PRK11124 artP arginine transpo 100.0 9E-34 1.9E-38 245.0 15.0 166 59-262 2-173 (242)
54 PRK09536 btuD corrinoid ABC tr 100.0 3.5E-34 7.6E-39 263.3 13.1 161 59-262 3-171 (402)
55 cd03218 ABC_YhbG The ABC trans 100.0 5E-34 1.1E-38 244.9 13.2 160 60-262 1-165 (232)
56 cd03296 ABC_CysA_sulfate_impor 100.0 4.2E-34 9.1E-39 246.7 12.7 158 59-262 2-168 (239)
57 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.4E-34 1.4E-38 245.1 13.8 158 60-262 2-164 (236)
58 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.6E-34 1.4E-38 245.9 13.9 159 61-262 2-167 (242)
59 COG1119 ModF ABC-type molybden 100.0 7.6E-34 1.7E-38 239.3 13.8 174 52-262 24-203 (257)
60 PRK11629 lolD lipoprotein tran 100.0 6.6E-34 1.4E-38 244.6 13.8 164 59-262 5-177 (233)
61 PRK10851 sulfate/thiosulfate t 100.0 3.9E-34 8.4E-39 259.8 12.9 159 59-262 2-168 (353)
62 cd03256 ABC_PhnC_transporter A 100.0 6.3E-34 1.4E-38 245.6 13.6 168 61-262 2-176 (241)
63 cd03263 ABC_subfamily_A The AB 100.0 7E-34 1.5E-38 242.2 13.7 157 61-262 2-165 (220)
64 PRK15079 oligopeptide ABC tran 100.0 1.7E-33 3.7E-38 253.6 16.8 167 59-262 8-193 (331)
65 PRK09493 glnQ glutamine ABC tr 100.0 9.2E-34 2E-38 244.7 14.4 162 60-262 2-168 (240)
66 PRK14250 phosphate ABC transpo 100.0 1.3E-33 2.8E-38 244.0 15.2 156 59-262 3-163 (241)
67 COG0488 Uup ATPase components 100.0 3.2E-33 7E-38 263.6 19.0 169 59-262 3-185 (530)
68 PRK11248 tauB taurine transpor 100.0 6.5E-34 1.4E-38 248.0 13.1 154 60-262 2-160 (255)
69 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.4E-34 2E-38 241.5 13.8 153 61-262 2-163 (220)
70 PRK11000 maltose/maltodextrin 100.0 4.9E-34 1.1E-38 260.7 12.9 158 59-262 3-165 (369)
71 PRK11308 dppF dipeptide transp 100.0 2.2E-33 4.8E-38 252.6 16.4 167 59-262 5-186 (327)
72 PRK13538 cytochrome c biogenes 100.0 2.3E-33 5E-38 236.6 15.5 155 60-262 2-161 (204)
73 KOG0058|consensus 100.0 2.4E-34 5.1E-39 272.1 10.4 165 56-262 462-636 (716)
74 TIGR03258 PhnT 2-aminoethylpho 100.0 7.6E-34 1.7E-38 258.4 13.4 158 59-262 5-169 (362)
75 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-33 3.2E-38 237.8 14.2 160 63-262 2-166 (206)
76 PRK11022 dppD dipeptide transp 100.0 2.3E-33 5.1E-38 252.4 16.4 168 59-262 3-185 (326)
77 PRK13647 cbiO cobalt transport 100.0 2.3E-33 5.1E-38 246.9 16.0 161 59-262 4-170 (274)
78 PRK10584 putative ABC transpor 100.0 1.5E-33 3.2E-38 241.5 14.3 164 59-262 6-178 (228)
79 PRK10247 putative ABC transpor 100.0 2E-33 4.4E-38 240.4 15.1 159 58-262 6-169 (225)
80 TIGR00972 3a0107s01c2 phosphat 100.0 2E-33 4.3E-38 243.6 15.1 161 60-262 2-176 (247)
81 TIGR02769 nickel_nikE nickel i 100.0 1.8E-33 3.8E-38 246.5 14.7 166 60-262 3-182 (265)
82 cd03268 ABC_BcrA_bacitracin_re 100.0 8.9E-34 1.9E-38 239.6 12.4 153 60-262 1-158 (208)
83 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-33 3.1E-38 242.3 13.8 162 60-262 2-172 (233)
84 PRK09452 potA putrescine/sperm 100.0 9.8E-34 2.1E-38 258.7 13.3 158 59-262 14-176 (375)
85 PRK13650 cbiO cobalt transport 100.0 3E-33 6.5E-38 246.8 15.9 161 59-262 4-172 (279)
86 COG4175 ProV ABC-type proline/ 100.0 1.4E-33 3E-38 244.6 13.1 150 72-262 46-196 (386)
87 PRK10895 lipopolysaccharide AB 100.0 1.3E-33 2.8E-38 243.9 12.9 161 59-262 3-169 (241)
88 COG0444 DppD ABC-type dipeptid 100.0 2.1E-33 4.5E-38 245.6 14.3 168 60-262 2-185 (316)
89 cd03257 ABC_NikE_OppD_transpor 100.0 2.2E-33 4.8E-38 240.1 13.7 165 60-262 2-177 (228)
90 PRK13638 cbiO cobalt transport 100.0 3.9E-33 8.5E-38 245.0 15.5 163 59-262 1-168 (271)
91 PRK11701 phnK phosphonate C-P 100.0 7.4E-33 1.6E-37 241.6 17.1 168 59-262 6-183 (258)
92 TIGR02323 CP_lyasePhnK phospho 100.0 6.9E-33 1.5E-37 241.0 16.8 168 59-262 3-180 (253)
93 PRK15112 antimicrobial peptide 100.0 2.7E-33 5.9E-38 245.6 14.4 163 59-262 4-181 (267)
94 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-33 2.7E-38 240.8 11.9 158 60-262 1-164 (222)
95 TIGR01978 sufC FeS assembly AT 100.0 2.6E-33 5.7E-38 242.0 14.1 163 60-262 1-176 (243)
96 PRK13641 cbiO cobalt transport 100.0 5.2E-33 1.1E-37 246.2 16.1 165 59-262 2-177 (287)
97 PRK13632 cbiO cobalt transport 100.0 5.1E-33 1.1E-37 244.4 15.9 163 57-262 5-174 (271)
98 COG1122 CbiO ABC-type cobalt t 100.0 9.7E-34 2.1E-38 242.7 11.0 161 59-262 3-170 (235)
99 cd03226 ABC_cobalt_CbiO_domain 100.0 1.9E-33 4.2E-38 237.1 12.7 151 62-262 2-158 (205)
100 cd03235 ABC_Metallic_Cations A 100.0 1.9E-33 4.1E-38 238.5 12.5 155 62-262 2-164 (213)
101 COG4152 ABC-type uncharacteriz 100.0 1.4E-33 3.1E-38 236.9 11.4 156 59-262 2-162 (300)
102 PRK11607 potG putrescine trans 100.0 1.7E-33 3.8E-38 257.4 13.0 158 59-262 19-181 (377)
103 TIGR01189 ccmA heme ABC export 100.0 2.3E-33 4.9E-38 235.5 12.7 154 60-262 1-159 (198)
104 PRK13635 cbiO cobalt transport 100.0 5.6E-33 1.2E-37 245.1 15.6 161 59-262 5-172 (279)
105 cd03231 ABC_CcmA_heme_exporter 100.0 2.1E-33 4.7E-38 236.3 12.4 152 60-262 1-157 (201)
106 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-33 4.5E-38 237.9 12.3 157 60-262 1-160 (211)
107 PRK13646 cbiO cobalt transport 100.0 8.5E-33 1.8E-37 244.7 16.7 165 59-262 2-177 (286)
108 PRK11231 fecE iron-dicitrate t 100.0 3.2E-33 7E-38 243.4 13.8 163 59-262 2-170 (255)
109 PRK09473 oppD oligopeptide tra 100.0 1E-32 2.2E-37 248.5 17.1 168 58-262 11-193 (330)
110 TIGR01188 drrA daunorubicin re 100.0 2.2E-33 4.7E-38 250.3 12.6 146 72-262 11-156 (302)
111 PRK13634 cbiO cobalt transport 100.0 1E-32 2.2E-37 244.7 16.7 164 60-262 3-177 (290)
112 PRK11247 ssuB aliphatic sulfon 100.0 2.3E-33 5E-38 244.7 12.4 150 58-262 11-165 (257)
113 PRK13637 cbiO cobalt transport 100.0 6.8E-33 1.5E-37 245.5 15.5 164 59-262 2-176 (287)
114 COG1123 ATPase components of v 100.0 2.9E-33 6.4E-38 260.6 13.8 167 58-262 279-461 (539)
115 PRK10619 histidine/lysine/argi 100.0 5.2E-33 1.1E-37 242.4 14.6 174 60-262 6-184 (257)
116 PRK13644 cbiO cobalt transport 100.0 6.9E-33 1.5E-37 243.9 15.4 160 60-262 2-168 (274)
117 COG2274 SunT ABC-type bacterio 100.0 2.1E-33 4.7E-38 272.6 13.2 165 56-262 468-641 (709)
118 PRK13643 cbiO cobalt transport 100.0 7.1E-33 1.5E-37 245.4 15.4 165 60-262 2-176 (288)
119 PRK13539 cytochrome c biogenes 100.0 2.7E-33 5.9E-38 236.7 11.9 153 59-262 2-159 (207)
120 TIGR03005 ectoine_ehuA ectoine 100.0 4.4E-33 9.5E-38 242.1 13.4 172 60-262 1-178 (252)
121 COG4181 Predicted ABC-type tra 100.0 2.4E-33 5.3E-38 224.2 10.7 164 59-262 6-178 (228)
122 PRK13649 cbiO cobalt transport 100.0 1.1E-32 2.3E-37 243.3 16.0 165 59-262 2-177 (280)
123 PRK13548 hmuV hemin importer A 100.0 4.9E-33 1.1E-37 242.8 13.3 160 59-262 2-172 (258)
124 PRK14247 phosphate ABC transpo 100.0 7.7E-33 1.7E-37 240.3 14.4 161 59-262 3-178 (250)
125 PRK13540 cytochrome c biogenes 100.0 5.7E-33 1.2E-37 233.5 13.1 153 60-262 2-159 (200)
126 PRK13652 cbiO cobalt transport 100.0 1.3E-32 2.8E-37 242.6 15.8 161 59-262 3-169 (277)
127 PRK10575 iron-hydroxamate tran 100.0 3.7E-33 8E-38 244.5 12.3 161 59-262 11-179 (265)
128 PRK13648 cbiO cobalt transport 100.0 1.3E-32 2.9E-37 241.4 15.8 161 59-262 7-174 (269)
129 COG4619 ABC-type uncharacteriz 100.0 2E-33 4.2E-38 224.1 9.4 145 72-262 21-165 (223)
130 PRK10771 thiQ thiamine transpo 100.0 5.5E-33 1.2E-37 238.7 12.8 157 60-262 2-161 (232)
131 COG0410 LivF ABC-type branched 100.0 6.3E-33 1.4E-37 231.9 12.6 160 59-261 3-167 (237)
132 TIGR03411 urea_trans_UrtD urea 100.0 7.1E-33 1.5E-37 239.3 13.4 168 59-262 2-175 (242)
133 PRK13631 cbiO cobalt transport 100.0 1.4E-32 3.1E-37 246.7 15.6 175 59-262 21-208 (320)
134 PRK13651 cobalt transporter AT 100.0 1.5E-32 3.2E-37 245.1 15.4 175 59-262 2-197 (305)
135 PRK14242 phosphate transporter 100.0 1.6E-32 3.5E-37 238.7 15.3 165 58-262 5-181 (253)
136 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.2E-33 6.9E-38 245.4 10.9 162 61-262 26-192 (269)
137 PRK10636 putative ABC transpor 100.0 4.2E-32 9.2E-37 263.8 19.8 174 59-262 1-181 (638)
138 PRK11300 livG leucine/isoleuci 100.0 7.4E-33 1.6E-37 241.0 13.1 173 59-262 5-185 (255)
139 COG4525 TauB ABC-type taurine 100.0 4E-33 8.6E-38 227.3 10.5 154 60-262 4-164 (259)
140 PRK14241 phosphate transporter 100.0 1.2E-32 2.6E-37 240.3 14.3 165 59-262 4-180 (258)
141 PRK10253 iron-enterobactin tra 100.0 6.3E-33 1.4E-37 243.0 12.6 162 58-262 6-175 (265)
142 PRK10070 glycine betaine trans 100.0 7.3E-33 1.6E-37 254.5 13.4 163 60-262 29-196 (400)
143 PRK15093 antimicrobial peptide 100.0 3E-32 6.4E-37 245.7 16.9 169 59-262 3-190 (330)
144 PRK13640 cbiO cobalt transport 100.0 2.2E-32 4.8E-37 241.6 15.6 161 59-262 5-175 (282)
145 TIGR01277 thiQ thiamine ABC tr 100.0 7.9E-33 1.7E-37 234.8 12.3 156 61-262 2-160 (213)
146 TIGR01186 proV glycine betaine 100.0 3.6E-33 7.7E-38 253.7 10.8 151 72-262 11-161 (363)
147 PRK13636 cbiO cobalt transport 100.0 2.5E-32 5.4E-37 241.4 15.7 163 59-262 5-173 (283)
148 TIGR03410 urea_trans_UrtE urea 100.0 9.2E-33 2E-37 236.9 12.3 158 60-262 1-163 (230)
149 TIGR02324 CP_lyasePhnL phospho 100.0 1.8E-32 4E-37 234.1 14.1 164 60-262 2-181 (224)
150 COG1123 ATPase components of v 100.0 1.9E-32 4.1E-37 255.2 15.3 169 59-262 5-186 (539)
151 PRK14273 phosphate ABC transpo 100.0 2.8E-32 6.1E-37 237.4 15.5 163 59-262 7-182 (254)
152 PRK10419 nikE nickel transport 100.0 4.9E-32 1.1E-36 237.7 17.1 167 59-262 3-183 (268)
153 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-32 2.8E-37 239.8 13.4 162 60-262 2-169 (256)
154 PRK11144 modC molybdate transp 100.0 7.6E-33 1.6E-37 251.6 12.4 156 60-262 2-160 (352)
155 TIGR02868 CydC thiol reductant 100.0 1E-32 2.2E-37 263.3 13.7 161 59-262 334-502 (529)
156 COG4608 AppF ABC-type oligopep 100.0 1.6E-32 3.4E-37 235.4 13.3 111 72-262 31-141 (268)
157 PRK14269 phosphate ABC transpo 100.0 2.7E-32 5.9E-37 236.4 15.0 162 59-262 2-174 (246)
158 PRK14267 phosphate ABC transpo 100.0 2.6E-32 5.6E-37 237.4 14.5 161 59-262 4-181 (253)
159 TIGR01166 cbiO cobalt transpor 100.0 2E-32 4.4E-37 228.3 13.2 150 72-262 10-159 (190)
160 PRK13543 cytochrome c biogenes 100.0 2E-32 4.4E-37 232.6 13.3 155 58-262 10-169 (214)
161 PRK10744 pstB phosphate transp 100.0 2.9E-32 6.3E-37 238.1 14.7 165 59-262 13-188 (260)
162 PRK13639 cbiO cobalt transport 100.0 4.3E-32 9.4E-37 238.9 15.7 162 60-262 2-169 (275)
163 PRK11614 livF leucine/isoleuci 100.0 1.1E-32 2.3E-37 237.6 11.6 159 59-262 5-169 (237)
164 KOG0927|consensus 100.0 7.1E-32 1.5E-36 247.5 17.4 182 50-262 66-253 (614)
165 PRK13642 cbiO cobalt transport 100.0 4.1E-32 8.8E-37 239.3 15.2 161 59-262 4-172 (277)
166 PRK09580 sufC cysteine desulfu 100.0 4.6E-32 1E-36 235.0 15.2 164 60-262 2-177 (248)
167 COG4604 CeuD ABC-type enteroch 100.0 9.4E-33 2E-37 225.4 10.1 162 59-262 1-167 (252)
168 TIGR02982 heterocyst_DevA ABC 100.0 4.5E-32 9.7E-37 231.3 14.8 163 60-262 2-173 (220)
169 COG4161 ArtP ABC-type arginine 100.0 4.2E-32 9.1E-37 215.5 13.4 167 59-262 2-173 (242)
170 PRK14268 phosphate ABC transpo 100.0 4.6E-32 9.9E-37 236.6 15.1 162 59-262 12-186 (258)
171 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-32 5.3E-37 232.6 13.0 152 60-262 3-172 (220)
172 PRK13645 cbiO cobalt transport 100.0 6.1E-32 1.3E-36 239.6 15.7 167 59-262 6-182 (289)
173 cd03214 ABC_Iron-Siderophores_ 100.0 6.7E-32 1.4E-36 223.5 14.9 123 62-262 2-129 (180)
174 cd03248 ABCC_TAP TAP, the Tran 100.0 5.3E-32 1.1E-36 231.6 14.1 165 56-262 8-182 (226)
175 PRK14248 phosphate ABC transpo 100.0 6.5E-32 1.4E-36 236.9 14.9 164 59-262 21-196 (268)
176 PRK13541 cytochrome c biogenes 100.0 2.7E-32 5.8E-37 228.6 11.9 150 60-262 2-155 (195)
177 PRK14245 phosphate ABC transpo 100.0 8.4E-32 1.8E-36 233.8 15.4 165 58-262 2-178 (250)
178 KOG0062|consensus 100.0 3.3E-32 7.1E-37 248.4 13.2 150 55-262 76-230 (582)
179 PRK14235 phosphate transporter 100.0 5.4E-32 1.2E-36 237.3 14.2 163 59-262 19-195 (267)
180 PRK09984 phosphonate/organopho 100.0 4.2E-32 9.1E-37 237.3 13.4 172 59-262 4-184 (262)
181 PRK10762 D-ribose transporter 100.0 1.6E-32 3.4E-37 260.4 11.5 162 59-262 4-173 (501)
182 PRK13633 cobalt transporter AT 100.0 1.1E-31 2.3E-36 237.0 15.9 161 59-262 4-176 (280)
183 CHL00131 ycf16 sulfate ABC tra 100.0 6.4E-32 1.4E-36 234.7 14.1 166 58-262 6-183 (252)
184 TIGR03415 ABC_choXWV_ATP choli 100.0 2.6E-32 5.6E-37 249.3 12.1 150 72-262 42-196 (382)
185 PRK14240 phosphate transporter 100.0 8.8E-32 1.9E-36 233.6 14.9 164 59-262 3-178 (250)
186 cd03297 ABC_ModC_molybdenum_tr 100.0 3.7E-32 7.9E-37 230.8 12.1 155 64-262 5-163 (214)
187 cd03254 ABCC_Glucan_exporter_l 100.0 7.7E-32 1.7E-36 230.9 14.2 161 60-262 3-171 (229)
188 PRK14259 phosphate ABC transpo 100.0 9.6E-32 2.1E-36 236.0 15.1 160 58-262 12-186 (269)
189 PRK14256 phosphate ABC transpo 100.0 6.3E-32 1.4E-36 234.9 13.7 165 60-262 5-180 (252)
190 PRK13547 hmuV hemin importer A 100.0 4.3E-32 9.3E-37 238.5 12.8 162 60-262 2-186 (272)
191 COG4559 ABC-type hemin transpo 100.0 5.1E-32 1.1E-36 223.4 12.3 160 59-262 1-173 (259)
192 PRK14239 phosphate transporter 100.0 1E-31 2.2E-36 233.4 15.0 164 59-262 5-180 (252)
193 cd03300 ABC_PotA_N PotA is an 100.0 6.6E-32 1.4E-36 232.1 13.6 156 61-262 2-162 (232)
194 PRK14274 phosphate ABC transpo 100.0 8.9E-32 1.9E-36 234.9 14.6 162 59-262 12-187 (259)
195 PRK14272 phosphate ABC transpo 100.0 1.1E-31 2.3E-36 233.3 14.5 164 58-262 3-180 (252)
196 PRK14271 phosphate ABC transpo 100.0 2E-31 4.4E-36 234.8 16.3 165 55-262 17-195 (276)
197 PRK14237 phosphate transporter 100.0 1.8E-31 3.9E-36 234.0 15.7 165 58-262 19-195 (267)
198 TIGR02142 modC_ABC molybdenum 100.0 4.3E-32 9.4E-37 246.8 12.0 157 64-262 4-163 (354)
199 PRK11174 cysteine/glutathione 100.0 7.4E-32 1.6E-36 260.3 14.2 161 59-262 349-517 (588)
200 cd03252 ABCC_Hemolysin The ABC 100.0 4.2E-32 9.1E-37 233.8 11.0 160 61-262 2-170 (237)
201 cd03299 ABC_ModC_like Archeal 100.0 8.4E-32 1.8E-36 231.9 12.8 156 61-262 2-161 (235)
202 PRK14251 phosphate ABC transpo 100.0 1.6E-31 3.5E-36 232.1 14.2 162 59-262 4-179 (251)
203 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.8E-32 1.5E-36 230.9 11.6 146 60-262 23-174 (224)
204 PRK13549 xylose transporter AT 100.0 5.4E-32 1.2E-36 257.1 12.1 162 59-262 5-175 (506)
205 PRK14253 phosphate ABC transpo 100.0 2.1E-31 4.5E-36 231.2 14.7 160 59-262 3-177 (249)
206 PRK09700 D-allose transporter 100.0 5.6E-32 1.2E-36 257.2 12.2 164 59-262 5-177 (510)
207 PRK14262 phosphate ABC transpo 100.0 1.8E-31 3.8E-36 231.7 14.2 163 59-262 3-178 (250)
208 PRK10938 putative molybdenum t 100.0 1.5E-31 3.3E-36 253.0 14.9 160 59-262 3-167 (490)
209 PRK15439 autoinducer 2 ABC tra 100.0 8.6E-32 1.9E-36 255.9 13.2 157 59-262 11-172 (510)
210 PRK11147 ABC transporter ATPas 100.0 1E-30 2.3E-35 254.2 21.0 175 59-262 3-188 (635)
211 TIGR01184 ntrCD nitrate transp 100.0 1.6E-31 3.5E-36 229.5 13.5 143 72-262 3-146 (230)
212 PRK14254 phosphate ABC transpo 100.0 1.9E-31 4E-36 236.0 14.2 164 57-262 37-212 (285)
213 PRK10418 nikD nickel transport 100.0 1.2E-31 2.6E-36 233.4 12.8 159 59-262 4-172 (254)
214 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-31 3.2E-36 228.0 13.0 152 60-262 3-171 (221)
215 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-31 2.5E-36 263.2 13.9 161 59-262 451-620 (686)
216 PRK10261 glutathione transport 100.0 2.6E-31 5.5E-36 257.9 16.1 167 58-262 312-495 (623)
217 TIGR03740 galliderm_ABC gallid 100.0 2.5E-31 5.5E-36 227.0 14.2 150 61-262 2-156 (223)
218 PRK14260 phosphate ABC transpo 100.0 3.7E-31 8E-36 231.0 15.5 163 59-262 7-182 (259)
219 PRK14275 phosphate ABC transpo 100.0 2.4E-31 5.2E-36 235.5 14.4 166 57-262 37-214 (286)
220 PRK15056 manganese/iron transp 100.0 1.6E-31 3.6E-36 234.9 13.3 161 59-262 6-174 (272)
221 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-31 4.7E-36 229.6 13.7 156 61-262 2-162 (237)
222 PRK10636 putative ABC transpor 100.0 6.3E-31 1.4E-35 255.6 18.4 146 58-262 311-462 (638)
223 PRK14236 phosphate transporter 100.0 4.4E-31 9.5E-36 232.2 15.6 165 57-262 23-200 (272)
224 KOG0057|consensus 100.0 1.1E-31 2.4E-36 246.9 12.1 160 60-262 352-519 (591)
225 PRK14270 phosphate ABC transpo 100.0 4E-31 8.6E-36 229.7 14.9 164 59-262 4-179 (251)
226 cd03267 ABC_NatA_like Similar 100.0 9.8E-32 2.1E-36 231.7 10.8 146 72-262 39-185 (236)
227 cd03251 ABCC_MsbA MsbA is an e 100.0 1.5E-31 3.3E-36 229.8 12.0 160 61-262 2-170 (234)
228 PRK14265 phosphate ABC transpo 100.0 5.7E-31 1.2E-35 231.7 15.8 166 56-262 17-193 (274)
229 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2E-31 4.3E-36 262.5 14.3 162 59-262 477-647 (710)
230 PRK09544 znuC high-affinity zi 100.0 2.3E-31 5E-36 231.4 12.8 143 59-262 4-152 (251)
231 KOG0055|consensus 100.0 2.4E-31 5.2E-36 264.2 14.5 167 54-262 345-521 (1228)
232 PRK15134 microcin C ABC transp 100.0 6E-31 1.3E-35 251.1 16.7 168 59-262 5-188 (529)
233 PRK14261 phosphate ABC transpo 100.0 4E-31 8.6E-36 230.0 14.1 164 59-262 6-181 (253)
234 PRK14249 phosphate ABC transpo 100.0 4E-31 8.7E-36 229.7 14.0 162 59-262 4-179 (251)
235 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.6E-31 9.9E-36 227.5 14.1 160 61-262 2-171 (238)
236 PRK14246 phosphate ABC transpo 100.0 3.6E-31 7.8E-36 230.9 13.6 162 59-262 10-185 (257)
237 PRK14243 phosphate transporter 100.0 6.4E-31 1.4E-35 230.2 15.1 165 57-262 8-183 (264)
238 PRK14238 phosphate transporter 100.0 4.9E-31 1.1E-35 231.8 14.1 163 58-262 23-199 (271)
239 PRK14255 phosphate ABC transpo 100.0 5.5E-31 1.2E-35 228.9 14.3 164 59-262 5-180 (252)
240 PRK14258 phosphate ABC transpo 100.0 6.6E-31 1.4E-35 229.7 14.8 162 59-262 7-182 (261)
241 PRK10261 glutathione transport 100.0 5.3E-31 1.2E-35 255.6 15.7 177 59-262 12-200 (623)
242 PRK15064 ABC transporter ATP-b 100.0 2.6E-30 5.6E-35 246.9 20.1 177 60-262 2-187 (530)
243 PRK11288 araG L-arabinose tran 100.0 2.3E-31 5.1E-36 252.4 12.8 162 59-262 4-172 (501)
244 TIGR02633 xylG D-xylose ABC tr 100.0 2.6E-31 5.7E-36 252.0 13.1 161 60-262 2-173 (500)
245 PRK11160 cysteine/glutathione 100.0 4.5E-31 9.8E-36 254.2 15.0 153 59-262 338-507 (574)
246 COG1132 MdlB ABC-type multidru 100.0 1.8E-31 3.8E-36 256.8 11.9 162 59-262 328-497 (567)
247 PRK11176 lipid transporter ATP 100.0 3.3E-31 7.1E-36 255.6 13.5 163 59-262 341-512 (582)
248 cd03253 ABCC_ATM1_transporter 100.0 5.6E-31 1.2E-35 226.6 13.4 160 61-262 2-169 (236)
249 COG0488 Uup ATPase components 100.0 8.1E-31 1.7E-35 247.4 15.6 145 58-262 320-471 (530)
250 PRK14266 phosphate ABC transpo 100.0 1E-30 2.2E-35 226.9 15.0 165 59-262 3-178 (250)
251 COG4172 ABC-type uncharacteriz 100.0 5.7E-31 1.2E-35 234.6 13.5 171 54-262 271-458 (534)
252 cd03234 ABCG_White The White s 100.0 6.5E-31 1.4E-35 225.0 13.4 157 60-262 4-175 (226)
253 PRK10790 putative multidrug tr 100.0 4.6E-31 9.9E-36 255.0 13.8 161 59-262 340-508 (592)
254 COG4988 CydD ABC-type transpor 100.0 5.2E-31 1.1E-35 245.0 13.3 167 54-262 315-488 (559)
255 TIGR02857 CydD thiol reductant 100.0 5.8E-31 1.3E-35 251.2 13.9 162 59-262 320-490 (529)
256 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-31 1E-35 251.4 13.3 173 60-262 1-200 (520)
257 PRK14244 phosphate ABC transpo 100.0 9.6E-31 2.1E-35 227.3 13.8 163 60-262 6-181 (251)
258 TIGR00958 3a01208 Conjugate Tr 100.0 5.9E-31 1.3E-35 259.0 14.0 162 59-262 478-649 (711)
259 PRK09700 D-allose transporter 100.0 3.2E-31 7E-36 252.0 11.7 174 58-262 264-441 (510)
260 COG4987 CydC ABC-type transpor 100.0 1.2E-30 2.5E-35 239.9 14.8 154 59-262 336-506 (573)
261 PRK13549 xylose transporter AT 100.0 4.3E-31 9.3E-36 250.9 12.1 166 59-262 259-437 (506)
262 TIGR03375 type_I_sec_LssB type 100.0 8.6E-31 1.9E-35 257.4 14.5 162 59-262 463-633 (694)
263 TIGR01193 bacteriocin_ABC ABC- 100.0 5.4E-31 1.2E-35 259.4 12.9 163 59-262 473-643 (708)
264 PRK10982 galactose/methyl gala 100.0 2.8E-31 6.1E-36 251.3 10.2 158 63-262 2-166 (491)
265 PRK15134 microcin C ABC transp 100.0 7.3E-31 1.6E-35 250.5 13.1 166 59-262 275-457 (529)
266 TIGR02633 xylG D-xylose ABC tr 100.0 5.9E-31 1.3E-35 249.6 12.3 167 58-262 256-435 (500)
267 KOG0055|consensus 100.0 5.2E-31 1.1E-35 261.8 12.1 164 57-262 985-1158(1228)
268 TIGR02770 nickel_nikD nickel i 100.0 7.7E-31 1.7E-35 225.1 11.3 148 72-262 4-157 (230)
269 COG4778 PhnL ABC-type phosphon 100.0 3.7E-30 8.1E-35 205.8 14.3 167 59-262 4-184 (235)
270 COG1129 MglA ABC-type sugar tr 100.0 1.3E-30 2.9E-35 241.3 13.2 163 59-262 8-177 (500)
271 PRK10938 putative molybdenum t 100.0 2.3E-30 5E-35 245.0 14.8 167 58-262 259-433 (490)
272 PRK10522 multidrug transporter 100.0 3.6E-30 7.7E-35 246.7 16.1 150 59-262 322-481 (547)
273 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.3E-30 4.9E-35 227.7 13.5 150 60-262 3-170 (275)
274 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.9E-30 6.3E-35 218.1 13.1 145 59-262 6-157 (207)
275 PRK10762 D-ribose transporter 100.0 1.2E-30 2.7E-35 247.5 12.1 167 58-262 256-427 (501)
276 PRK13657 cyclic beta-1,2-gluca 100.0 2.9E-30 6.3E-35 249.3 14.9 162 59-262 334-503 (588)
277 PRK03695 vitamin B12-transport 100.0 1.3E-30 2.8E-35 226.2 11.2 145 72-262 14-165 (248)
278 PRK14252 phosphate ABC transpo 100.0 4.4E-30 9.4E-35 225.0 14.6 167 58-262 15-193 (265)
279 PRK14264 phosphate ABC transpo 100.0 4.3E-30 9.3E-35 229.4 14.7 175 59-262 45-232 (305)
280 TIGR02203 MsbA_lipidA lipid A 100.0 2.3E-30 5.1E-35 249.0 13.9 163 59-262 330-501 (571)
281 PRK14263 phosphate ABC transpo 100.0 6E-30 1.3E-34 223.7 15.1 165 55-262 4-181 (261)
282 cd03229 ABC_Class3 This class 100.0 1.1E-30 2.5E-35 215.7 9.6 60 60-121 1-65 (178)
283 cd03216 ABC_Carb_Monos_I This 100.0 3.1E-30 6.8E-35 210.3 12.0 109 60-262 1-114 (163)
284 TIGR01842 type_I_sec_PrtD type 100.0 3E-30 6.6E-35 247.1 14.0 162 59-262 316-486 (544)
285 PRK10982 galactose/methyl gala 100.0 1.2E-30 2.5E-35 247.1 10.9 172 58-262 249-423 (491)
286 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-30 2.5E-35 220.0 9.7 136 59-262 3-150 (202)
287 TIGR03269 met_CoM_red_A2 methy 100.0 3.6E-30 7.7E-35 245.4 14.1 164 58-262 278-459 (520)
288 cd03290 ABCC_SUR1_N The SUR do 100.0 2.2E-30 4.8E-35 220.4 11.2 155 61-262 2-172 (218)
289 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-30 3.1E-35 214.2 9.7 59 61-121 2-65 (173)
290 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.4E-30 1.6E-34 244.9 16.1 151 59-262 337-502 (555)
291 cd03246 ABCC_Protease_Secretio 100.0 2E-30 4.3E-35 213.3 10.2 59 61-121 2-67 (173)
292 PRK14257 phosphate ABC transpo 100.0 6.8E-30 1.5E-34 230.1 14.2 165 58-262 79-257 (329)
293 cd03228 ABCC_MRP_Like The MRP 100.0 3.8E-30 8.2E-35 211.3 11.3 59 61-121 2-67 (171)
294 cd03247 ABCC_cytochrome_bd The 100.0 2.2E-30 4.8E-35 214.0 9.9 122 61-262 2-130 (178)
295 PRK11819 putative ABC transpor 100.0 2.8E-29 6.1E-34 240.9 19.0 178 59-262 6-195 (556)
296 cd03288 ABCC_SUR2 The SUR doma 100.0 8.7E-30 1.9E-34 222.2 14.1 161 59-262 19-188 (257)
297 PTZ00265 multidrug resistance 100.0 1.8E-30 4E-35 270.1 11.4 162 59-262 1165-1390(1466)
298 PRK11147 ABC transporter ATPas 100.0 4.4E-30 9.6E-35 249.8 13.4 150 58-262 318-472 (635)
299 PRK13545 tagH teichoic acids e 100.0 1.9E-29 4.1E-34 236.0 16.7 162 33-262 5-175 (549)
300 PRK15064 ABC transporter ATP-b 100.0 6.7E-30 1.4E-34 244.0 13.8 147 58-262 318-470 (530)
301 TIGR01846 type_I_sec_HlyB type 100.0 7.1E-30 1.5E-34 250.9 14.4 162 59-262 455-625 (694)
302 cd03217 ABC_FeS_Assembly ABC-t 100.0 5E-30 1.1E-34 215.7 11.3 130 61-262 2-136 (200)
303 COG4172 ABC-type uncharacteriz 100.0 1.2E-29 2.6E-34 226.2 13.9 169 59-262 6-189 (534)
304 TIGR01192 chvA glucan exporter 100.0 4.8E-30 1.1E-34 247.5 12.0 162 59-262 334-503 (585)
305 PRK10789 putative multidrug tr 100.0 8.9E-30 1.9E-34 245.0 13.5 162 59-262 313-483 (569)
306 TIGR02204 MsbA_rel ABC transpo 100.0 1.1E-29 2.3E-34 244.7 14.0 162 59-262 337-508 (576)
307 PRK15439 autoinducer 2 ABC tra 100.0 6.2E-30 1.3E-34 243.1 12.0 167 58-262 267-435 (510)
308 PRK13546 teichoic acids export 100.0 5.1E-29 1.1E-33 218.1 16.8 133 72-262 42-175 (264)
309 PF00005 ABC_tran: ABC transpo 100.0 2.8E-30 6.1E-35 203.8 7.9 132 72-259 3-137 (137)
310 PRK11819 putative ABC transpor 100.0 1E-29 2.2E-34 244.0 13.3 149 58-262 323-477 (556)
311 PRK11288 araG L-arabinose tran 100.0 7.3E-30 1.6E-34 242.2 12.0 166 59-262 257-428 (501)
312 COG4586 ABC-type uncharacteriz 100.0 1.2E-29 2.6E-34 216.3 11.9 146 72-262 42-188 (325)
313 cd03215 ABC_Carb_Monos_II This 100.0 9E-30 2E-34 211.1 10.7 62 59-122 4-66 (182)
314 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-29 4.9E-34 241.4 15.0 177 58-262 3-193 (552)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-29 2.8E-34 243.0 13.2 149 58-262 321-475 (552)
316 COG4133 CcmA ABC-type transpor 100.0 2.6E-29 5.7E-34 203.8 12.6 154 61-262 4-162 (209)
317 COG3845 ABC-type uncharacteriz 100.0 1.3E-29 2.9E-34 231.1 11.3 161 59-261 4-171 (501)
318 COG4167 SapF ABC-type antimicr 100.0 1.2E-29 2.7E-34 205.1 9.5 163 60-262 5-181 (267)
319 cd03250 ABCC_MRP_domain1 Domai 100.0 2.2E-29 4.7E-34 212.2 11.6 135 72-262 23-159 (204)
320 COG4674 Uncharacterized ABC-ty 100.0 5.6E-30 1.2E-34 208.8 7.3 168 58-261 4-178 (249)
321 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.2E-29 4.7E-34 218.3 11.4 126 77-262 22-147 (246)
322 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-29 4.7E-34 205.9 10.4 115 61-262 2-123 (166)
323 cd03232 ABC_PDR_domain2 The pl 100.0 4.2E-29 9E-34 208.8 11.8 61 60-120 4-73 (192)
324 PLN03073 ABC transporter F fam 100.0 9.8E-29 2.1E-33 242.0 16.3 145 58-262 507-659 (718)
325 COG4107 PhnK ABC-type phosphon 100.0 4.3E-29 9.2E-34 200.6 11.2 172 59-262 6-183 (258)
326 TIGR01257 rim_protein retinal- 100.0 3.5E-29 7.5E-34 262.9 13.7 160 58-262 1936-2102(2272)
327 TIGR01257 rim_protein retinal- 100.0 4.3E-29 9.3E-34 262.2 14.1 160 58-262 927-1093(2272)
328 cd03213 ABCG_EPDR ABCG transpo 100.0 2.9E-29 6.4E-34 210.1 10.4 60 60-121 4-76 (194)
329 PRK13409 putative ATPase RIL; 100.0 1.2E-28 2.7E-33 237.1 15.7 143 58-262 339-485 (590)
330 TIGR03771 anch_rpt_ABC anchore 100.0 6.6E-29 1.4E-33 212.3 10.5 142 75-262 1-145 (223)
331 PLN03130 ABC transporter C fam 100.0 8.3E-29 1.8E-33 259.9 13.2 161 59-262 1237-1406(1622)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-28 2.7E-33 214.6 12.1 142 72-262 19-171 (255)
333 PLN03232 ABC transporter C fam 100.0 6.5E-29 1.4E-33 260.0 12.2 161 59-262 1234-1403(1495)
334 PRK10535 macrolide transporter 100.0 1.5E-28 3.2E-33 239.5 13.8 164 59-262 4-176 (648)
335 COG0396 sufC Cysteine desulfur 100.0 2.8E-28 6.1E-33 203.6 13.0 165 59-262 3-176 (251)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.1E-28 4.6E-33 195.6 11.6 96 61-262 2-102 (144)
337 PTZ00265 multidrug resistance 100.0 2.4E-28 5.2E-33 254.4 14.4 190 59-262 382-611 (1466)
338 PRK15177 Vi polysaccharide exp 100.0 2.2E-28 4.7E-33 207.8 11.3 130 72-262 5-136 (213)
339 KOG0056|consensus 100.0 7.6E-29 1.7E-33 225.3 8.8 162 59-262 537-706 (790)
340 COG4618 ArpD ABC-type protease 100.0 2.3E-28 4.9E-33 223.3 11.9 166 55-262 330-504 (580)
341 PLN03211 ABC transporter G-25; 100.0 1.6E-28 3.4E-33 239.0 11.3 155 61-262 70-238 (659)
342 COG4148 ModC ABC-type molybdat 100.0 6.4E-29 1.4E-33 212.5 7.3 145 72-262 16-160 (352)
343 TIGR00957 MRP_assoc_pro multi 100.0 3E-28 6.5E-33 255.3 12.7 161 59-262 1284-1453(1522)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 4.1E-28 8.9E-33 200.0 10.5 95 64-262 5-103 (177)
345 PTZ00243 ABC transporter; Prov 100.0 5.8E-28 1.2E-32 253.1 13.5 152 59-262 1308-1478(1560)
346 PRK13409 putative ATPase RIL; 99.9 3E-28 6.6E-33 234.4 9.9 149 65-262 79-244 (590)
347 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.1E-27 2.3E-32 211.5 12.3 149 59-262 39-191 (282)
348 cd03238 ABC_UvrA The excision 99.9 1.7E-27 3.6E-32 196.2 10.9 108 71-262 12-121 (176)
349 KOG0927|consensus 99.9 4.3E-27 9.4E-32 216.1 14.5 148 58-262 388-541 (614)
350 TIGR00954 3a01203 Peroxysomal 99.9 3.4E-27 7.5E-32 230.2 14.2 148 59-262 451-614 (659)
351 COG4136 ABC-type uncharacteriz 99.9 1.1E-27 2.3E-32 188.2 7.0 157 59-262 2-166 (213)
352 TIGR01271 CFTR_protein cystic 99.9 3.7E-27 8.1E-32 246.5 12.7 151 59-262 1217-1385(1490)
353 TIGR01187 potA spermidine/putr 99.9 1.9E-27 4.2E-32 214.0 8.8 132 85-262 1-132 (325)
354 COG5265 ATM1 ABC-type transpor 99.9 2E-27 4.2E-32 213.0 7.7 162 59-262 262-431 (497)
355 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.6E-26 3.4E-31 187.1 11.7 106 62-262 2-112 (157)
356 TIGR00956 3a01205 Pleiotropic 99.9 1.8E-26 3.9E-31 239.9 14.1 158 58-262 758-934 (1394)
357 COG1101 PhnK ABC-type uncharac 99.9 4.4E-26 9.6E-31 188.7 12.6 151 72-262 24-180 (263)
358 TIGR00955 3a01204 The Eye Pigm 99.9 4.8E-26 1E-30 220.9 11.7 143 72-262 43-198 (617)
359 PLN03140 ABC transporter G fam 99.9 1.4E-25 2.9E-30 233.3 14.8 160 58-262 866-1051(1470)
360 KOG0061|consensus 99.9 5.1E-25 1.1E-29 212.6 13.7 146 72-262 48-202 (613)
361 cd03270 ABC_UvrA_I The excisio 99.9 9.5E-25 2.1E-29 187.0 12.9 52 211-262 118-171 (226)
362 PLN03130 ABC transporter C fam 99.9 5.1E-25 1.1E-29 231.5 13.4 148 59-262 614-772 (1622)
363 PLN03232 ABC transporter C fam 99.9 7E-25 1.5E-29 229.8 13.0 149 59-262 614-772 (1495)
364 TIGR00957 MRP_assoc_pro multi 99.9 1E-24 2.2E-29 228.8 12.8 148 59-262 636-792 (1522)
365 COG1134 TagH ABC-type polysacc 99.9 4.6E-24 9.9E-29 180.2 12.6 134 72-262 45-179 (249)
366 TIGR00956 3a01205 Pleiotropic 99.9 9.4E-25 2E-29 227.2 8.3 148 72-262 79-241 (1394)
367 KOG0059|consensus 99.9 1.9E-23 4.1E-28 209.5 15.1 161 58-262 563-730 (885)
368 TIGR01271 CFTR_protein cystic 99.9 5.1E-24 1.1E-28 223.1 9.7 148 59-262 428-580 (1490)
369 cd03271 ABC_UvrA_II The excisi 99.9 1.4E-22 3E-27 176.6 15.0 55 208-262 147-204 (261)
370 PLN03140 ABC transporter G fam 99.9 1.1E-23 2.4E-28 219.0 8.4 174 72-262 183-368 (1470)
371 KOG0054|consensus 99.9 5.3E-23 1.1E-27 208.8 12.1 162 58-262 1137-1307(1381)
372 PTZ00243 ABC transporter; Prov 99.9 2.4E-22 5.2E-27 211.0 15.2 135 72-262 678-814 (1560)
373 cd03278 ABC_SMC_barmotin Barmo 99.9 8E-24 1.7E-28 177.7 3.4 51 208-262 95-149 (197)
374 COG4138 BtuD ABC-type cobalami 99.9 1.4E-22 3.1E-27 163.1 6.4 153 59-262 3-164 (248)
375 COG1245 Predicted ATPase, RNas 99.9 1.1E-21 2.4E-26 177.7 12.0 138 57-262 340-487 (591)
376 KOG0066|consensus 99.9 1.1E-22 2.3E-27 183.5 5.4 145 59-262 586-736 (807)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.4E-21 5.3E-26 167.3 10.2 39 224-262 152-194 (243)
378 KOG0062|consensus 99.9 4.6E-21 1E-25 175.7 12.2 146 59-262 362-514 (582)
379 COG4178 ABC-type uncharacteriz 99.9 9.6E-22 2.1E-26 185.9 7.9 145 57-262 390-547 (604)
380 cd03279 ABC_sbcCD SbcCD and ot 99.8 4.8E-22 1E-26 168.8 3.1 47 215-262 109-165 (213)
381 COG4615 PvdE ABC-type sideroph 99.8 2E-20 4.2E-25 167.1 13.3 148 59-261 322-479 (546)
382 KOG0054|consensus 99.8 2.7E-20 5.9E-25 189.3 11.7 150 57-262 516-675 (1381)
383 COG1129 MglA ABC-type sugar tr 99.8 2.7E-20 5.9E-25 172.9 10.2 167 58-262 262-433 (500)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 6.4E-21 1.4E-25 161.8 3.4 51 211-262 109-163 (212)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.8 4.2E-21 9E-26 166.9 1.4 57 206-262 123-202 (251)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.8 7.1E-20 1.5E-24 158.9 6.0 37 226-262 151-191 (247)
387 cd03240 ABC_Rad50 The catalyti 99.8 7E-20 1.5E-24 154.5 4.9 38 225-262 110-153 (204)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.2E-18 2.7E-23 146.3 12.4 52 207-262 90-145 (198)
389 COG1245 Predicted ATPase, RNas 99.8 4.3E-18 9.3E-23 154.5 12.5 53 209-262 193-245 (591)
390 KOG0065|consensus 99.8 2.9E-19 6.3E-24 178.8 5.2 149 72-262 809-962 (1391)
391 TIGR00630 uvra excinuclease AB 99.8 9E-18 2E-22 167.7 15.5 54 209-262 807-863 (924)
392 PRK00635 excinuclease ABC subu 99.8 7E-18 1.5E-22 175.8 15.2 56 206-262 786-844 (1809)
393 KOG0060|consensus 99.8 5.7E-18 1.2E-22 157.4 11.2 152 58-262 432-602 (659)
394 KOG2355|consensus 99.7 1E-18 2.2E-23 144.2 5.2 156 58-262 12-179 (291)
395 PRK00349 uvrA excinuclease ABC 99.7 5.3E-18 1.1E-22 169.6 11.2 54 209-262 809-865 (943)
396 COG4170 SapD ABC-type antimicr 99.7 5.6E-18 1.2E-22 140.4 8.7 161 72-262 25-190 (330)
397 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.5E-17 3.2E-22 139.9 8.1 44 217-262 79-122 (200)
398 COG3845 ABC-type uncharacteriz 99.7 1.2E-16 2.7E-21 146.5 10.0 173 58-262 256-435 (501)
399 KOG0064|consensus 99.7 6E-17 1.3E-21 149.2 8.0 61 59-119 481-553 (728)
400 COG2401 ABC-type ATPase fused 99.7 1.6E-16 3.4E-21 143.1 8.2 132 72-262 401-539 (593)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1.8E-15 4E-20 128.4 10.3 39 224-262 120-162 (213)
402 cd03227 ABC_Class2 ABC-type Cl 99.6 4.9E-15 1.1E-19 120.5 8.8 33 230-262 77-113 (162)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.6 3.6E-15 7.7E-20 127.4 5.5 48 211-262 74-126 (222)
404 cd03243 ABC_MutS_homologs The 99.5 9.9E-15 2.1E-19 122.9 7.4 36 226-262 87-122 (202)
405 cd03239 ABC_SMC_head The struc 99.5 1.1E-14 2.4E-19 120.3 7.5 32 231-262 95-130 (178)
406 cd03241 ABC_RecN RecN ATPase i 99.5 4.2E-14 9.1E-19 124.7 11.4 35 228-262 168-206 (276)
407 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.3E-14 5.1E-19 120.8 6.7 48 213-262 75-122 (204)
408 KOG0063|consensus 99.5 7.5E-14 1.6E-18 126.2 9.1 124 72-262 354-488 (592)
409 cd03242 ABC_RecF RecF is a rec 99.4 1.7E-13 3.8E-18 120.4 7.2 35 228-262 181-224 (270)
410 cd03283 ABC_MutS-like MutS-lik 99.4 1.6E-13 3.4E-18 115.4 3.2 27 76-102 21-47 (199)
411 KOG0065|consensus 99.4 9.7E-14 2.1E-18 139.7 2.0 154 72-262 133-292 (1391)
412 PRK00635 excinuclease ABC subu 99.4 7.3E-12 1.6E-16 131.4 15.0 55 208-262 1677-1734(1809)
413 smart00534 MUTSac ATPase domai 99.3 6.1E-13 1.3E-17 110.5 3.5 47 214-262 46-92 (185)
414 COG0178 UvrA Excinuclease ATPa 99.3 1.9E-11 4.1E-16 118.2 12.9 53 209-261 801-856 (935)
415 TIGR01069 mutS2 MutS2 family p 99.3 4.9E-12 1.1E-16 125.3 6.3 36 226-262 381-416 (771)
416 cd03281 ABC_MSH5_euk MutS5 hom 99.3 2.7E-11 5.8E-16 102.9 9.8 29 234-262 94-122 (213)
417 PTZ00132 GTP-binding nuclear p 99.2 9.3E-11 2E-15 99.3 10.5 35 228-262 148-189 (215)
418 KOG0063|consensus 99.2 6.1E-11 1.3E-15 107.6 7.2 53 209-262 193-245 (592)
419 TIGR02858 spore_III_AA stage I 99.1 1.9E-10 4.1E-15 100.9 9.5 39 81-121 112-150 (270)
420 PRK00064 recF recombination pr 99.1 6.4E-10 1.4E-14 101.7 13.2 36 227-262 270-314 (361)
421 cd03284 ABC_MutS1 MutS1 homolo 99.1 1.3E-10 2.8E-15 98.9 8.1 30 72-102 23-52 (216)
422 PRK06793 fliI flagellum-specif 99.1 1.4E-10 3E-15 107.5 8.7 46 72-119 148-193 (432)
423 PRK00349 uvrA excinuclease ABC 99.1 7.3E-11 1.6E-15 118.8 5.6 50 213-262 472-523 (943)
424 PF02463 SMC_N: RecF/RecN/SMC 99.1 3.6E-10 7.7E-15 96.1 8.9 49 207-262 120-172 (220)
425 TIGR00630 uvra excinuclease AB 99.1 9.9E-11 2.1E-15 117.6 5.4 50 213-262 470-521 (924)
426 cd00820 PEPCK_HprK Phosphoenol 99.1 2.4E-10 5.1E-15 86.2 5.3 43 72-122 7-49 (107)
427 cd01128 rho_factor Transcripti 99.0 2.9E-09 6.3E-14 92.4 12.0 31 230-262 129-167 (249)
428 TIGR03238 dnd_assoc_3 dnd syst 99.0 4E-10 8.7E-15 104.7 6.3 53 72-128 24-77 (504)
429 PRK00409 recombination and DNA 99.0 2.3E-10 5E-15 113.7 4.8 38 224-262 384-421 (782)
430 PRK08533 flagellar accessory p 98.9 6.7E-09 1.4E-13 89.2 10.0 40 59-102 7-47 (230)
431 cd03287 ABC_MSH3_euk MutS3 hom 98.9 1.9E-09 4.1E-14 92.0 5.0 31 72-102 23-53 (222)
432 PRK13695 putative NTPase; Prov 98.8 1.4E-09 3E-14 89.3 2.0 37 225-261 73-111 (174)
433 cd02023 UMPK Uridine monophosp 98.7 7.5E-09 1.6E-13 86.6 3.7 46 212-261 66-111 (198)
434 cd03286 ABC_MSH6_euk MutS6 hom 98.7 2E-08 4.3E-13 85.5 5.2 31 72-102 22-52 (218)
435 PHA02562 46 endonuclease subun 98.6 3.7E-08 8E-13 95.0 4.5 37 226-262 464-511 (562)
436 cd01124 KaiC KaiC is a circadi 98.6 1.3E-07 2.8E-12 77.9 6.6 39 224-262 65-109 (187)
437 cd01130 VirB11-like_ATPase Typ 98.5 3.7E-08 8E-13 81.8 2.7 40 76-117 21-60 (186)
438 PRK01156 chromosome segregatio 98.5 1.5E-07 3.3E-12 95.7 6.4 54 209-262 765-839 (895)
439 PRK06995 flhF flagellar biosyn 98.5 2.3E-07 5E-12 87.4 7.1 46 72-119 248-295 (484)
440 smart00382 AAA ATPases associa 98.5 1.7E-06 3.7E-11 66.3 10.7 34 228-261 58-91 (148)
441 cd01131 PilT Pilus retraction 98.5 5.4E-07 1.2E-11 75.6 8.1 37 82-119 3-39 (198)
442 TIGR00606 rad50 rad50. This fa 98.5 1.1E-07 2.4E-12 100.0 4.4 36 227-262 1196-1237(1311)
443 PRK06002 fliI flagellum-specif 98.5 3.1E-07 6.7E-12 85.5 6.7 57 59-117 139-200 (450)
444 TIGR00634 recN DNA repair prot 98.5 1.3E-07 2.8E-12 91.4 4.2 34 229-262 439-476 (563)
445 PRK10246 exonuclease subunit S 98.4 1.5E-07 3.2E-12 97.0 4.5 38 225-262 944-989 (1047)
446 TIGR00618 sbcc exonuclease Sbc 98.4 1.5E-07 3.3E-12 97.0 4.5 40 223-262 943-992 (1042)
447 cd01120 RecA-like_NTPases RecA 98.4 3.6E-07 7.9E-12 72.7 5.8 36 82-119 1-36 (165)
448 PF13555 AAA_29: P-loop contai 98.4 3.7E-07 8E-12 61.9 4.6 30 73-102 15-45 (62)
449 PRK10869 recombination and rep 98.4 2.1E-07 4.6E-12 89.6 4.2 33 230-262 430-466 (553)
450 PRK06067 flagellar accessory p 98.4 1.8E-06 3.8E-11 74.2 8.3 32 229-260 99-132 (234)
451 PRK03918 chromosome segregatio 98.3 3.4E-07 7.3E-12 92.8 4.0 38 225-262 783-826 (880)
452 PRK09825 idnK D-gluconate kina 98.3 6.8E-07 1.5E-11 73.7 4.6 36 79-120 2-37 (176)
453 PRK10078 ribose 1,5-bisphospho 98.3 1.2E-06 2.7E-11 72.5 5.9 37 80-121 2-38 (186)
454 PRK07721 fliI flagellum-specif 98.3 1.2E-06 2.6E-11 81.9 5.8 45 72-119 151-195 (438)
455 PRK00300 gmk guanylate kinase; 98.3 1.3E-06 2.7E-11 73.4 5.3 26 78-103 3-28 (205)
456 TIGR00235 udk uridine kinase. 98.3 6.6E-07 1.4E-11 75.5 3.6 25 78-102 4-28 (207)
457 TIGR02903 spore_lon_C ATP-depe 98.3 2.9E-06 6.3E-11 82.8 8.5 24 79-102 174-197 (615)
458 TIGR02168 SMC_prok_B chromosom 98.3 5.6E-07 1.2E-11 93.3 3.8 39 224-262 1083-1125(1179)
459 TIGR03498 FliI_clade3 flagella 98.3 1.1E-06 2.5E-11 81.4 5.2 46 72-119 132-177 (418)
460 cd01136 ATPase_flagellum-secre 98.2 2E-06 4.4E-11 77.3 5.9 42 75-118 64-105 (326)
461 PRK07196 fliI flagellum-specif 98.2 1.6E-06 3.4E-11 80.7 5.2 36 72-110 148-183 (434)
462 cd01125 repA Hexameric Replica 98.2 1.6E-06 3.5E-11 74.7 4.9 22 80-101 1-22 (239)
463 PRK08149 ATP synthase SpaL; Va 98.2 1.9E-06 4.1E-11 80.1 5.5 47 72-121 144-193 (428)
464 TIGR00554 panK_bact pantothena 98.2 1.1E-06 2.4E-11 77.9 3.7 43 81-123 63-105 (290)
465 TIGR00767 rho transcription te 98.2 2.6E-06 5.6E-11 78.2 6.0 45 59-103 130-191 (415)
466 PRK06315 type III secretion sy 98.2 3.2E-06 7E-11 78.9 6.2 45 72-117 156-200 (442)
467 TIGR01420 pilT_fam pilus retra 98.2 6.9E-06 1.5E-10 74.7 8.2 42 77-119 119-160 (343)
468 COG3910 Predicted ATPase [Gene 98.1 4.8E-06 1E-10 68.6 5.9 24 79-102 36-59 (233)
469 PRK09099 type III secretion sy 98.1 3.8E-06 8.3E-11 78.4 6.0 45 72-119 156-200 (441)
470 PRK09862 putative ATP-dependen 98.1 3.8E-06 8.2E-11 79.8 6.0 57 62-120 187-248 (506)
471 PRK07594 type III secretion sy 98.1 2.9E-06 6.4E-11 78.9 5.1 58 60-119 130-192 (433)
472 PRK07960 fliI flagellum-specif 98.1 2.1E-06 4.6E-11 80.0 4.2 47 72-120 167-216 (455)
473 PRK05922 type III secretion sy 98.1 4.2E-06 9.2E-11 77.8 6.0 45 72-118 149-193 (434)
474 PRK09270 nucleoside triphospha 98.1 2.2E-06 4.7E-11 73.5 3.6 34 78-113 31-64 (229)
475 PF13476 AAA_23: AAA domain; P 98.1 2.7E-06 5.9E-11 70.3 3.8 30 72-102 12-41 (202)
476 TIGR02546 III_secr_ATP type II 98.1 3.9E-06 8.4E-11 78.2 5.1 45 72-119 138-182 (422)
477 TIGR02169 SMC_prok_A chromosom 98.1 1.9E-06 4.1E-11 89.6 3.1 39 224-262 1068-1110(1164)
478 PRK14722 flhF flagellar biosyn 98.1 1.5E-05 3.3E-10 72.9 8.4 30 73-102 130-159 (374)
479 TIGR02788 VirB11 P-type DNA tr 98.1 2.7E-06 5.7E-11 76.3 3.3 40 74-115 138-177 (308)
480 PRK10416 signal recognition pa 98.1 3.5E-06 7.7E-11 75.8 4.0 41 78-120 112-152 (318)
481 PRK05399 DNA mismatch repair p 98.0 6.7E-06 1.5E-10 83.0 6.3 29 72-101 600-628 (854)
482 cd02025 PanK Pantothenate kina 98.0 2.9E-06 6.3E-11 72.4 3.2 37 82-119 1-38 (220)
483 TIGR00611 recf recF protein. A 98.0 3.4E-06 7.4E-11 77.3 3.6 34 229-262 274-316 (365)
484 TIGR03497 FliI_clade2 flagella 98.0 8.3E-06 1.8E-10 75.7 6.0 44 75-120 132-175 (413)
485 TIGR01026 fliI_yscN ATPase Fli 98.0 6.3E-06 1.4E-10 77.1 5.1 44 74-119 157-200 (440)
486 TIGR03263 guanyl_kin guanylate 98.0 4.2E-06 9.1E-11 68.7 3.5 24 80-103 1-24 (180)
487 TIGR03496 FliI_clade1 flagella 98.0 9.4E-06 2E-10 75.3 6.2 46 72-119 129-174 (411)
488 PRK00454 engB GTP-binding prot 98.0 2E-05 4.4E-10 65.1 7.5 24 80-103 24-47 (196)
489 TIGR00606 rad50 rad50. This fa 98.0 6.7E-06 1.5E-10 86.8 5.7 43 74-119 23-70 (1311)
490 PRK08972 fliI flagellum-specif 98.0 8.9E-06 1.9E-10 75.7 5.8 31 72-102 154-184 (444)
491 PRK14721 flhF flagellar biosyn 98.0 5.1E-06 1.1E-10 77.2 3.6 26 77-102 188-213 (420)
492 PRK03846 adenylylsulfate kinas 98.0 7.2E-06 1.6E-10 68.7 4.2 42 78-120 22-63 (198)
493 cd04155 Arl3 Arl3 subfamily. 98.0 1E-05 2.2E-10 65.5 4.9 42 80-121 14-61 (173)
494 TIGR02322 phosphon_PhnN phosph 98.0 6.3E-06 1.4E-10 67.6 3.5 23 80-102 1-23 (179)
495 PRK10246 exonuclease subunit S 97.9 1.2E-05 2.6E-10 83.0 6.1 44 59-102 5-52 (1047)
496 PRK14079 recF recombination pr 97.9 6.9E-06 1.5E-10 74.9 3.8 34 229-262 262-304 (349)
497 PRK01889 GTPase RsgA; Reviewed 97.9 1E-05 2.2E-10 74.0 4.5 41 76-118 191-231 (356)
498 PRK08472 fliI flagellum-specif 97.9 1.4E-05 3.1E-10 74.4 5.5 45 72-119 150-194 (434)
499 TIGR03185 DNA_S_dndD DNA sulfu 97.9 1.5E-05 3.3E-10 78.5 6.0 44 59-102 5-50 (650)
500 PRK05480 uridine/cytidine kina 97.9 1.1E-05 2.5E-10 67.9 4.3 39 78-120 4-42 (209)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=289.48 Aligned_cols=162 Identities=27% Similarity=0.409 Sum_probs=125.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|+. +|||+|.+||+++|+||||||||||||||.+ +..|++|+|.++|+++.... .+ .
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~--LE~~~~G~I~i~g~~~~~~~--~~----~ 73 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG--LEEPDSGSITVDGEDVGDKK--DI----L 73 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC--CcCCCCceEEECCEeccchh--hH----H
Confidence 5899999999997 9999999999999999999999999999997 78999999999998774321 00 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..++.+.+..|. ..+++..+ ..+|+....-.......+++++++.++
T Consensus 74 ~~R~~vGmVFQ~------------------------fnLFPHlT---------vleNv~lap~~v~~~~k~eA~~~A~~l 120 (240)
T COG1126 74 KLRRKVGMVFQQ------------------------FNLFPHLT---------VLENVTLAPVKVKKLSKAEAREKALEL 120 (240)
T ss_pred HHHHhcCeeccc------------------------ccccccch---------HHHHHHhhhHHHcCCCHHHHHHHHHHH
Confidence 111111111110 11222222 222333333344566777888999999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+.+|+. +..+.+|.+|||||||||+|||||+.+|+++|+|||||+||
T Consensus 121 L~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALD 168 (240)
T COG1126 121 LEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168 (240)
T ss_pred HHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCC
Confidence 9999998 56899999999999999999999999999999999999999
No 2
>KOG0066|consensus
Probab=100.00 E-value=3.5e-40 Score=295.76 Aligned_cols=225 Identities=60% Similarity=0.892 Sum_probs=195.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCCCccccceeeeecccCCCCCcccCCCceeEEEeeeeEeeCC-----CeeEEEeCC
Q psy2689 6 SHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCL-----KVQKQIASG 80 (262)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~v~~~~~~-----~isl~i~~G 80 (262)
+.+|+++.+.+++|++.++...++ ..--.+|++++.+++ +.+.+..+++++|.++|++++..+ +.||.|..|
T Consensus 214 egqek~kq~~Q~Eyerq~~g~~~~--~~l~n~FtvSQ~~ks-~~q~A~lEna~DIKiEnF~ISA~Gk~LFvnA~L~Iv~G 290 (807)
T KOG0066|consen 214 EGQEKKKQKDQEEYERQMEGIGSG--AELGNHFTVSQLSKS-GTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVYG 290 (807)
T ss_pred cchhhhhhhHHHHHHHHhhcccch--hhhcccccHHHhhhh-hhHHHHHhhcccceeeeeeeecccceeeeccceEEEec
Confidence 356778888888899888865433 222238999998874 456677888999999999999876 899999999
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHH-HhhhcCchhh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLE-QVEASDDSAV 159 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 159 (262)
.+||||||||.||||||+.|+.+.+..|++..|+++.|++-.....+++.++..+..+..++.+...+. ++..++.+
T Consensus 291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~t-- 368 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTT-- 368 (807)
T ss_pred ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchH--
Confidence 999999999999999999999988999999999999999998899999999999999999988877765 55444433
Q ss_pred hHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHH
Q psy2689 160 NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRV 239 (262)
Q Consensus 160 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv 239 (262)
..+++..++..++.++++.++++++++|..+||+..+.++|+..+|||||+||
T Consensus 369 ---------------------------aaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRv 421 (807)
T KOG0066|consen 369 ---------------------------AAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRV 421 (807)
T ss_pred ---------------------------HHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeeh
Confidence 45667778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEeEecCCCCCCC
Q psy2689 240 SLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 240 ~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|||||+.+|.+|+|||||||||
T Consensus 422 SLARALflEPTLLMLDEPTNHLD 444 (807)
T KOG0066|consen 422 SLARALFLEPTLLMLDEPTNHLD 444 (807)
T ss_pred hHHHHHhcCceeeeecCCccccc
Confidence 99999999999999999999998
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-39 Score=275.44 Aligned_cols=161 Identities=30% Similarity=0.416 Sum_probs=132.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|||+.|++ ++||+|++||+++|||||||||||+||||.+ +..|++|+|+++|+++...+...++..++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr--Liept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR--LIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc--ccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 4789999999986 8999999999999999999999999999998 78999999999999998877766655555
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
+..|.+.+|+ .++ ..++++.+. .+..+.....++++.++
T Consensus 79 YviQqigLFP-------------------------------h~T---------v~eNIa~VP-~L~~w~k~~i~~r~~EL 117 (309)
T COG1125 79 YVIQQIGLFP-------------------------------HLT---------VAENIATVP-KLLGWDKERIKKRADEL 117 (309)
T ss_pred hhhhhcccCC-------------------------------Ccc---------HHHHHHhhh-hhcCCCHHHHHHHHHHH
Confidence 4444443332 111 112222222 24456667788899999
Q ss_pred HHhCCCCh-hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTK-EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~-~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+.+|++. ...+|+|++|||||+|||.+||||+.+|++||||||+++||
T Consensus 118 l~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALD 167 (309)
T COG1125 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167 (309)
T ss_pred HHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccC
Confidence 99999985 58899999999999999999999999999999999999998
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.5e-40 Score=281.88 Aligned_cols=164 Identities=30% Similarity=0.436 Sum_probs=123.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.++++|++++|++ |+||+|++|++++|+||||||||||||+|+| +..|.+|+|.++|+++...+...+.
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g--~l~p~~G~V~l~g~~i~~~~~kelA---- 75 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG--LLKPKSGEVLLDGKDIASLSPKELA---- 75 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc--cCCCCCCEEEECCCchhhcCHHHHh----
Confidence 4789999999986 8999999999999999999999999999998 6789999999999999766543322
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
+.+.+.+|... ....+++.+++..++... .........++++.+.+.
T Consensus 76 ---k~ia~vpQ~~~----~~~~~tV~d~V~~GR~p~--------------------------~~~~~~~~~~D~~~v~~a 122 (258)
T COG1120 76 ---KKLAYVPQSPS----APFGLTVYELVLLGRYPH--------------------------LGLFGRPSKEDEEIVEEA 122 (258)
T ss_pred ---hhEEEeccCCC----CCCCcEEeehHhhcCCcc--------------------------cccccCCCHhHHHHHHHH
Confidence 12222222211 112344444444332210 000011233455678899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+.+|+. +..+|++.+|||||||||.|||||+++|++||||||||+||
T Consensus 123 L~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LD 170 (258)
T COG1120 123 LELLGLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD 170 (258)
T ss_pred HHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccC
Confidence 9999997 67899999999999999999999999999999999999999
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=281.17 Aligned_cols=163 Identities=28% Similarity=0.402 Sum_probs=126.9
Q ss_pred eEEEeeeeEeeCC----------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL----------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~----------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
+|++++|++.|.. ||||+|++||++||||+||||||||+|||.+ +..|++|+|.++|+++...+...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~--Le~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL--LERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEEcCEecccCChHHH
Confidence 4778888887752 7999999999999999999999999999997 899999999999999987765544
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
+. .++.+.+..|...+. .+.+ .+++++.+ .++......+.++
T Consensus 79 r~----~R~~IGMIFQhFnLL---ssrT------------------------------V~~NvA~P-Leiag~~k~ei~~ 120 (339)
T COG1135 79 RQ----LRQKIGMIFQHFNLL---SSRT------------------------------VFENVAFP-LELAGVPKAEIKQ 120 (339)
T ss_pred HH----HHhhccEEecccccc---ccch------------------------------HHhhhhhh-HhhcCCCHHHHHH
Confidence 32 233333332222211 0111 12222222 2344566677889
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++|+.+|++ +..+++|.+|||||||||+|||||+.+|+|||.|||||+||
T Consensus 121 RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALD 173 (339)
T COG1135 121 RVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173 (339)
T ss_pred HHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCC
Confidence 999999999998 57899999999999999999999999999999999999999
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=274.96 Aligned_cols=155 Identities=34% Similarity=0.471 Sum_probs=118.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.+.++++++.|+. |+||+|.+||+++||||||||||||||+|+| +..|++|+|.++|+++...... +.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG--L~~p~~G~V~~~g~~v~~p~~~-----~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG--LEKPTSGEVLLDGRPVTGPGPD-----IG 75 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCcccCCCCCC-----EE
Confidence 4789999999986 9999999999999999999999999999998 7899999999999987322111 00
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.. +++. .++++.+.++ |+.... .+......+..+++.++
T Consensus 76 ~v------FQ~~-------------------------~LlPW~Tv~~---------NV~l~l-~~~~~~~~e~~~~a~~~ 114 (248)
T COG1116 76 YV------FQED-------------------------ALLPWLTVLD---------NVALGL-ELRGKSKAEARERAKEL 114 (248)
T ss_pred EE------eccC-------------------------cccchhhHHh---------hheehh-hccccchHhHHHHHHHH
Confidence 11 1111 1222332221 111111 11122344556689999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+.+|+. ...+++|++|||||||||+|||||+.+|+|||||||+++||
T Consensus 115 L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 115 LELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred HHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 9999998 46889999999999999999999999999999999999998
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-39 Score=269.46 Aligned_cols=163 Identities=31% Similarity=0.453 Sum_probs=123.4
Q ss_pred eeEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 58 VDIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 58 ~~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.+++++|+++.|++ +|||+|.+||++||||+||||||||.++|+| +..|++|+|.++|.++.......
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G--l~~p~~G~I~~~G~~~~~~~~~~- 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG--LEKPSSGSILLDGKPLAPKKRAK- 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCceEEECCcccCccccch-
Confidence 35888999999864 7999999999999999999999999999998 78999999999998775432110
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
.+. ..++.+++.+....|+..+.+. .+.+.+ ........+.
T Consensus 79 -----------~~~---~~VQmVFQDp~~SLnP~~tv~~----------------------~l~Epl---~~~~~~~~~~ 119 (252)
T COG1124 79 -----------AFY---RPVQMVFQDPYSSLNPRRTVGR----------------------ILSEPL---RPHGLSKSQQ 119 (252)
T ss_pred -----------hhc---cceeEEecCCccccCcchhHHH----------------------HHhhhh---ccCCccHHHH
Confidence 111 1122223344444444433211 121221 2122234556
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++|+.+|+.....+|++++|||||||||+|||||+.+|++||||||||+||
T Consensus 120 ~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD 173 (252)
T COG1124 120 RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173 (252)
T ss_pred HHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhc
Confidence 699999999999999999999999999999999999999999999999999998
No 8
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-38 Score=267.34 Aligned_cols=163 Identities=30% Similarity=0.440 Sum_probs=117.6
Q ss_pred EEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
++++||++.|+. ++||+|++||+++|+|||||||||||++|.| +..|++|.|.++|+++...+....
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~--ld~pt~G~v~i~g~d~~~l~~~~~-- 77 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPTSGEVLINGKDLTKLSEKEL-- 77 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc--ccCCCCceEEECCEEcCcCCHHHH--
Confidence 567888887752 8999999999999999999999999999998 788999999999999876654322
Q ss_pred HHhhhHHHHHHHH-HhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 131 VLSADKNRVKLLK-ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
..++. ....+.| ...+++.++ ..+++.-+. .+..........+
T Consensus 78 --------~~~R~~~iGfvFQ------------------~~nLl~~lt---------v~ENv~lpl-~~~~~~~~~~~~~ 121 (226)
T COG1136 78 --------AKLRRKKIGFVFQ------------------NFNLLPDLT---------VLENVELPL-LIAGKSAGRRKRA 121 (226)
T ss_pred --------HHHHHHhEEEECc------------------cCCCCCCCC---------HHHHHHhHH-HHcCCChhHHHHH
Confidence 11111 1111111 001112222 222232221 2222222245667
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+++.+|+.+...+++|++|||||||||||||||+.+|++||+||||.+||
T Consensus 122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD 174 (226)
T COG1136 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174 (226)
T ss_pred HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence 88899999998655558899999999999999999999999999999999998
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-38 Score=264.91 Aligned_cols=167 Identities=28% Similarity=0.331 Sum_probs=130.8
Q ss_pred ceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 57 SVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
...|++++++++|++ ++||+|++||+++|+||||||||||||+|.| +..|++|+|+++|+++.........
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G--ll~P~~GeI~i~G~~i~~ls~~~~~-- 81 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG--LLRPDKGEILIDGEDIPQLSEEELY-- 81 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc--cCCCCCCeEEEcCcchhccCHHHHH--
Confidence 346999999999987 8999999999999999999999999999998 7899999999999998765433221
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
..++++.++.|...+. +.+ + ..+|++.+..++..+.....+..+.
T Consensus 82 --~ir~r~GvlFQ~gALF----ssl--------------------t---------V~eNVafplre~~~lp~~~i~~lv~ 126 (263)
T COG1127 82 --EIRKRMGVLFQQGALF----SSL--------------------T---------VFENVAFPLREHTKLPESLIRELVL 126 (263)
T ss_pred --HHHhheeEEeeccccc----ccc--------------------c---------hhHhhheehHhhccCCHHHHHHHHH
Confidence 1112222222222221 111 1 2334444445555666667777888
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.-|+.+|+.....++.|++|||||++|++||||++.+|+||++||||+|||
T Consensus 127 ~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD 177 (263)
T COG1127 127 MKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177 (263)
T ss_pred HHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 889999999776899999999999999999999999999999999999998
No 10
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=269.43 Aligned_cols=164 Identities=29% Similarity=0.444 Sum_probs=120.7
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
..|+++|++++|++ ||||+|.+|++++||||||||||||+|+|+| +..|.+|+|.+++.++.....
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG--ll~p~~G~i~~~g~~~~~~~~------- 73 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG--LLKPSSGEIKIFGKPVRKRRK------- 73 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCcCCcceEEEcccccccccc-------
Confidence 35899999999984 9999999999999999999999999999998 789999999999987543211
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..++.+.+|...+. ...+.++.+++..+...+.+ .+... ...+.+.+.+
T Consensus 74 ---~~~IgYVPQ~~~~d--~~fP~tV~d~V~~g~~~~~g-------------------------~~~~~-~~~d~~~v~~ 122 (254)
T COG1121 74 ---RLRIGYVPQKSSVD--RSFPITVKDVVLLGRYGKKG-------------------------WFRRL-NKKDKEKVDE 122 (254)
T ss_pred ---CCeEEEcCcccccC--CCCCcCHHHHHHccCccccc-------------------------ccccc-cHHHHHHHHH
Confidence 01222332222111 01223333333322111100 01111 2234678999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+.+|+. +..++++.+|||||+|||.|||||+.+|++|||||||+|+|
T Consensus 123 aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD 171 (254)
T COG1121 123 ALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171 (254)
T ss_pred HHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCC
Confidence 99999998 67899999999999999999999999999999999999998
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=259.58 Aligned_cols=171 Identities=26% Similarity=0.403 Sum_probs=124.8
Q ss_pred eeEEEeeeeEee-CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 58 VDIKVENFSLSP-CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~-~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
++|+++|+++.| ++ +|||+|++||+++||||||||||||||+|.| +..|++|+|.++|.++.......++..
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng--l~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc--ccCCCcceEEecccchhccchHHHHHH
Confidence 469999999999 44 8999999999999999999999999999998 789999999999998876654433211
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
+..+.+..|...+ ....+ ..|+....... ...+..+-.+...+.+..+
T Consensus 80 ----r~~iGmIfQ~~nL----v~r~sv~~NVl~grl~~-----------------------~s~~~slfglfsk~dk~~A 128 (258)
T COG3638 80 ----RRDIGMIFQQFNL----VPRLSVLENVLLGRLGY-----------------------TSTWRSLFGLFSKEDKAQA 128 (258)
T ss_pred ----HHhceeEeccCCc----ccccHHHHHHHhhhccc-----------------------chHHHHHhCCCCHHHHHHH
Confidence 1112221111111 01222 23333321110 0122223334445667789
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.|+++|+.+ ...+++++|||||+|||+|||||+++|+++|.|||+++||
T Consensus 129 l~aLervgi~~-~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLD 179 (258)
T COG3638 129 LDALERVGILD-KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179 (258)
T ss_pred HHHHHHcCcHH-HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccC
Confidence 99999999984 5677799999999999999999999999999999999998
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-38 Score=278.15 Aligned_cols=158 Identities=29% Similarity=0.427 Sum_probs=124.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|+++.|+. ++||+|..||+++|+||||||||||||+|+| +..|++|+|.++|.++...++..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG--Le~~~~G~I~i~g~~vt~l~P~~------ 74 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG--LEEPTSGEILIDGRDVTDLPPEK------ 74 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEECCCCChhH------
Confidence 4889999999996 6999999999999999999999999999998 78999999999999987654321
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+. +++..+|+.++ ..+|++.. ..++....++.++++.++
T Consensus 75 ---R~iamV------------------------FQ~yALyPhmt---------V~~Niaf~-Lk~~~~~k~ei~~rV~ev 117 (338)
T COG3839 75 ---RGIAMV------------------------FQNYALYPHMT---------VYENIAFG-LKLRGVPKAEIDKRVKEV 117 (338)
T ss_pred ---CCEEEE------------------------eCCccccCCCc---------HHHHhhhh-hhhCCCchHHHHHHHHHH
Confidence 001111 11112333333 22233222 123444566788899999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++ +..++++.+|||||||||+|||||+.+|+++|||||+|+||
T Consensus 118 a~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLD 165 (338)
T COG3839 118 AKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165 (338)
T ss_pred HHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhh
Confidence 9999997 57889999999999999999999999999999999999998
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=280.65 Aligned_cols=159 Identities=30% Similarity=0.427 Sum_probs=123.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.++++|++++|++ |+||+|.+||+++|+||||||||||||||+| +..|++|+|.++|+++...+...
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG--fe~p~~G~I~l~G~~i~~lpp~k------ 76 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG--FEQPSSGEILLDGEDITDVPPEK------ 76 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEECCCCChhh------
Confidence 5899999999996 8999999999999999999999999999998 89999999999999997654321
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+..| +..+++.++ ..+|++.-.........++..+++.++
T Consensus 77 ---R~ig~VFQ------------------------~YALFPHlt---------V~~NVafGLk~~~~~~~~~i~~rv~e~ 120 (352)
T COG3842 77 ---RPIGMVFQ------------------------SYALFPHMT---------VEENVAFGLKVRKKLKKAEIKARVEEA 120 (352)
T ss_pred ---cccceeec------------------------CcccCCCCc---------HHHHhhhhhhhcCCCCHHHHHHHHHHH
Confidence 11111111 112223333 222333222211112334466799999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+.+++. ...+|++++|||||||||+|||||+.+|++||||||.|+||
T Consensus 121 L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 121 LELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred HHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 9999998 47889999999999999999999999999999999999998
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.4e-37 Score=250.90 Aligned_cols=163 Identities=25% Similarity=0.324 Sum_probs=122.0
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+|+++||++.|++ |+||+|++||++-|+||||||||||||+|++ ...|+.|+|+++|+++.......+.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~--~e~pt~G~i~~~~~dl~~l~~~~iP--- 75 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG--EERPTRGKILVNGHDLSRLKGREIP--- 75 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHh--hhcCCCceEEECCeecccccccccc---
Confidence 4789999999975 8999999999999999999999999999998 5799999999999998765433221
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..++.+....|.. .++.+.+ .+++++.+. .+......+...++.+
T Consensus 76 -~LRR~IGvVFQD~------------------------rLL~~~t---------vyeNVA~pL-~v~G~~~~~i~~rV~~ 120 (223)
T COG2884 76 -FLRRQIGVVFQDF------------------------RLLPDRT---------VYENVALPL-RVIGKPPREIRRRVSE 120 (223)
T ss_pred -hhhheeeeEeeec------------------------cccccch---------Hhhhhhhhh-hccCCCHHHHHHHHHH
Confidence 1111111111111 1111111 222232222 2223445567789999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+.+||. +..+..|.+|||||||||+||||++.+|++||.||||.+||
T Consensus 121 ~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD 169 (223)
T COG2884 121 VLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169 (223)
T ss_pred HHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence 99999997 46777789999999999999999999999999999999998
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-37 Score=251.71 Aligned_cols=159 Identities=30% Similarity=0.425 Sum_probs=123.5
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
++.+.+++++|+. |+||+++.|+++||+|||||||||+|+||++ +..|++|.|+++|.+....+..
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat--lL~P~~G~v~idg~d~~~~p~~------ 72 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT--LLIPDSGKVTIDGVDTVRDPSF------ 72 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH--hccCCCceEEEeecccccChHH------
Confidence 4788999999986 9999999999999999999999999999997 7899999999999987544322
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
.++.+..+.....+ +..++ ..+++. .+..+..+.....++++.+
T Consensus 73 --vrr~IGVl~~e~gl------------------------Y~RlT---------~rEnl~-~Fa~L~~l~~~~~kari~~ 116 (245)
T COG4555 73 --VRRKIGVLFGERGL------------------------YARLT---------ARENLK-YFARLNGLSRKEIKARIAE 116 (245)
T ss_pred --HhhhcceecCCcCh------------------------hhhhh---------HHHHHH-HHHHHhhhhhhHHHHHHHH
Confidence 12222222211111 11111 111221 2344555666678899999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+.|++. +..++++..||.||||||+|||||+++|++|+|||||||||
T Consensus 117 l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 117 LSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999997 56788899999999999999999999999999999999998
No 16
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2e-35 Score=251.06 Aligned_cols=162 Identities=25% Similarity=0.346 Sum_probs=111.1
Q ss_pred EEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 60 IKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~--- 76 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG--IEKPTRGKIRFNGQDLTRLRGREIP--- 76 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEehhhcChhHHH---
Confidence 678888888841 7899999999999999999999999999998 6789999999999877432211000
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+.+..+... +++..+ ..+++.... ............++.+
T Consensus 77 -~~~~~i~~~~q~~~------------------------~~~~~t---------v~e~l~~~~-~~~~~~~~~~~~~~~~ 121 (216)
T TIGR00960 77 -FLRRHIGMVFQDHR------------------------LLSDRT---------VYDNVAFPL-RIIGVPPRDANERVSA 121 (216)
T ss_pred -HHHHhceEEecCcc------------------------cccccc---------HHHHHHHHH-HhcCCCHHHHHHHHHH
Confidence 00001111111000 000000 111111110 0111122234567889
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 170 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLD 170 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 99999997 45678899999999999999999999999999999999998
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-35 Score=262.95 Aligned_cols=159 Identities=33% Similarity=0.513 Sum_probs=117.5
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+.++|+++.|+ . +|||+|.+|+++||+||||||||||+|+|+| +..|++|+|.++|+++.... ..
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~g--l~~p~~G~i~i~G~~~~~~~-~~----- 75 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTSGEILVLGYDVVKEP-AK----- 75 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhC--CcCCCceEEEEcCEeCccCH-HH-----
Confidence 478899999999 4 8999999999999999999999999999998 68899999999999874321 10
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
.++.+.+..+... +++.++ ..+++ .++..+........++++.+
T Consensus 76 --~~~~igy~~~~~~------------------------~~~~lT---------~~e~l-~~~~~l~~~~~~~~~~~~~~ 119 (293)
T COG1131 76 --VRRRIGYVPQEPS------------------------LYPELT---------VRENL-EFFARLYGLSKEEAEERIEE 119 (293)
T ss_pred --HHhheEEEccCCC------------------------CCcccc---------HHHHH-HHHHHHhCCChhHHHHHHHH
Confidence 0111111111100 111111 11112 12233333332345678999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+.. ..++++++||+|||||++||+||+.+|++|||||||+|||
T Consensus 120 ~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLD 168 (293)
T COG1131 120 LLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168 (293)
T ss_pred HHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCC
Confidence 999999986 4478899999999999999999999999999999999999
No 18
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=254.43 Aligned_cols=163 Identities=28% Similarity=0.396 Sum_probs=110.7
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~~~~~~~~~---- 74 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG--LLRPDSGEVLIDGEDISGLSEAELYR---- 74 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEccccChhhHHH----
Confidence 357888888864 8999999999999999999999999999998 67899999999998874322100000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
....+.+..+...+ ....+ ..+++.................++.+++
T Consensus 75 ~~~~i~~v~q~~~~----~~~~t-----------------------------v~~~l~~~~~~~~~~~~~~~~~~~~~~l 121 (235)
T cd03261 75 LRRRMGMLFQSGAL----FDSLT-----------------------------VFENVAFPLREHTRLSEEEIREIVLEKL 121 (235)
T ss_pred HhcceEEEccCccc----CCCCc-----------------------------HHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 00011111110000 00001 1111111100000112223345688899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 168 (235)
T cd03261 122 EAVGLRG-AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168 (235)
T ss_pred HHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 9999974 5688899999999999999999999999999999999998
No 19
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.1e-35 Score=266.68 Aligned_cols=162 Identities=27% Similarity=0.430 Sum_probs=115.1
Q ss_pred EEEeeeeEeeC----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|+ . |+||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+...+..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g--l~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEECCcCCHHHHHH
Confidence 77888888884 1 7899999999999999999999999999998 68899999999999886543221100
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
. +..+.+..+... +++..+ ..+++.... .+..........++
T Consensus 80 ~----r~~Ig~v~Q~~~------------------------l~~~~t---------v~eni~~~~-~~~~~~~~~~~~~v 121 (343)
T TIGR02314 80 A----RRQIGMIFQHFN------------------------LLSSRT---------VFGNVALPL-ELDNTPKDEIKRKV 121 (343)
T ss_pred H----hcCEEEEECCcc------------------------ccccCc---------HHHHHHHHH-HHcCCCHHHHHHHH
Confidence 0 000111100000 000000 112222111 11222333455678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD 172 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 8999999997 46789999999999999999999999999999999999998
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=257.05 Aligned_cols=161 Identities=30% Similarity=0.419 Sum_probs=118.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-hHHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~~~~~~~ 132 (262)
+|.++++++.|+. ||+|+|+.||.+||+|||||||||||++|+| +..|+.|+|.++|+-+..... ..
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG--Le~p~~G~I~~~~~~l~D~~~~~~----- 74 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG--LETPDAGRIRLNGRVLFDVSNLAV----- 74 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC--cCCCCCceEEECCEeccchhccch-----
Confidence 5788999998876 8999999999999999999999999999998 789999999999993322111 11
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....+.+..|...+. .-++ +.|+.+.-. + .-...+......++.
T Consensus 75 --~~R~VGfvFQ~YALF----~HmtVa~NIAFGl~---------------------------~--~~~~p~~~~~r~rv~ 119 (345)
T COG1118 75 --RDRKVGFVFQHYALF----PHMTVADNIAFGLK---------------------------V--RKERPSEAEIRARVE 119 (345)
T ss_pred --hhcceeEEEechhhc----ccchHHhhhhhccc---------------------------c--cccCCChhhHHHHHH
Confidence 111222222211111 1111 223333210 0 001122345678899
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++|..+.++ .+.+++|.+|||||||||+|||||+.+|++||||||+++||
T Consensus 120 elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALD 169 (345)
T COG1118 120 ELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169 (345)
T ss_pred HHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhh
Confidence 999999997 58899999999999999999999999999999999999998
No 21
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-35 Score=247.22 Aligned_cols=156 Identities=31% Similarity=0.439 Sum_probs=109.1
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++..... .
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~~~~--~------- 70 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG--LERPDSGEILIDGRDVTGVPP--E------- 70 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEEcCcCch--h-------
Confidence 56788888864 8999999999999999999999999999998 678999999999987743211 0
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
...+.+..+...+ ....+ ..+++.... ............++.++++
T Consensus 71 ~~~i~~v~q~~~~----~~~~t-----------------------------v~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 116 (213)
T cd03259 71 RRNIGMVFQDYAL----FPHLT-----------------------------VAENIAFGL-KLRGVPKAEIRARVRELLE 116 (213)
T ss_pred hccEEEEcCchhh----ccCCc-----------------------------HHHHHHhHH-HHcCCCHHHHHHHHHHHHH
Confidence 0001111110000 00001 111111000 0111112233456788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 117 ~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 117 LVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99997 45678899999999999999999999999999999999998
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.8e-35 Score=260.32 Aligned_cols=159 Identities=29% Similarity=0.438 Sum_probs=115.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...... .
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G--l~~p~~G~v~i~G~~~~~~~~~-~----- 78 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG--LTHPDAGSISLCGEPVPSRARH-A----- 78 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEecccchHH-H-----
Confidence 5899999999975 8999999999999999999999999999998 6789999999999887432110 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..+... ++++++ ..+++.. +..+..........++.++
T Consensus 79 --~~~ig~v~q~~~------------------------~~~~~t---------v~e~l~~-~~~~~~~~~~~~~~~~~~~ 122 (306)
T PRK13537 79 --RQRVGVVPQFDN------------------------LDPDFT---------VRENLLV-FGRYFGLSAAAARALVPPL 122 (306)
T ss_pred --HhcEEEEeccCc------------------------CCCCCc---------HHHHHHH-HHHHcCCCHHHHHHHHHHH
Confidence 011111111100 000011 1111111 1112222223344567889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++++||||||||++|||||+++|++|||||||+|||
T Consensus 123 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD 170 (306)
T PRK13537 123 LEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170 (306)
T ss_pred HHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCC
Confidence 9999997 45788899999999999999999999999999999999998
No 23
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=249.58 Aligned_cols=169 Identities=28% Similarity=0.399 Sum_probs=123.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH-HH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI-VL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~-~~ 132 (262)
.+++++++++|++ |+||++.+||++|||||||||||||+|+|+| ++.|++|+|.+.|++|...+...+.. -+
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG--~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG--FYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc--cccCCCceEEECCcccCCCCHHHHHhccc
Confidence 4789999999998 9999999999999999999999999999998 89999999999999998765443210 01
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc--CChhcHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS--IEADAAEPR 209 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 209 (262)
...+|...++ +.+++ +|+........ . +...+ .... ....+..++
T Consensus 82 ~RTFQ~~rlF-----------~~lTVlENv~va~~~~~-~-------------------~~~~l-~~~~~~~~e~~~~e~ 129 (250)
T COG0411 82 ARTFQITRLF-----------PGLTVLENVAVGAHARL-G-------------------LSGLL-GRPRARKEEREARER 129 (250)
T ss_pred eeeccccccc-----------CCCcHHHHHHHHhhhhh-h-------------------hhhhh-ccccchhhHHHHHHH
Confidence 1111111111 22332 34333321110 0 00000 0000 123456678
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++|+.+|+. +..++++.+||+|||+|+.|||||+.+|++|+||||.+||.
T Consensus 130 A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln 181 (250)
T COG0411 130 ARELLEFVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181 (250)
T ss_pred HHHHHHHcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCC
Confidence 99999999998 57899999999999999999999999999999999999984
No 24
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-34 Score=245.20 Aligned_cols=162 Identities=27% Similarity=0.362 Sum_probs=111.6
Q ss_pred EEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|+++|++++|+ + ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|.++..........
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G--l~~~~~G~i~~~g~~~~~~~~~~~~~--- 76 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG--ALTPSRGQVRIAGEDVNRLRGRQLPL--- 76 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEEcccCCHHHHHH---
Confidence 67889999883 3 8999999999999999999999999999998 56899999999998875332110000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+.+..+... +++..+ ..+++.... ............++.++
T Consensus 77 -~~~~i~~~~q~~~------------------------~~~~~t---------v~~~l~~~~-~~~~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 77 -LRRRIGVVFQDFR------------------------LLPDRT---------VYENVALPL-EVRGKKEREIQRRVGAA 121 (214)
T ss_pred -HHhheEEEecChh------------------------hccCCc---------HHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 0001111111000 000000 111111110 01111222334578899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD 169 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLD 169 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 9999997 45678899999999999999999999999999999999998
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-35 Score=239.89 Aligned_cols=165 Identities=27% Similarity=0.360 Sum_probs=111.8
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~ 129 (262)
..++++|++++|+. +||++|++++++|||||||||||||||++.+..-..| ..|+|.|+|++|.....+.+.
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 35889999999987 9999999999999999999999999999998422222 359999999999754322211
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.+.++....|... ..+-...+|+.+..+ +..+.....++.
T Consensus 86 -----lRr~vGMVFQkPn----PFp~SIydNVayG~r-------------------------------~~g~~~~~ldei 125 (253)
T COG1117 86 -----LRRRVGMVFQKPN----PFPMSIYDNVAYGLR-------------------------------LHGIKDKELDEI 125 (253)
T ss_pred -----HHHHheeeccCCC----CCCchHHHHHHHhHH-------------------------------hhccchHHHHHH
Confidence 1112221111110 001112334433321 111111233445
Q ss_pred HHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++..|....|- .+.+++.+..||||||||++|||||+.+|+|||||||||+||
T Consensus 126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALD 181 (253)
T COG1117 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181 (253)
T ss_pred HHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 55556555553 244567788899999999999999999999999999999998
No 26
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=247.00 Aligned_cols=158 Identities=30% Similarity=0.428 Sum_probs=110.4
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.... ...
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~-~~~------ 71 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT--LLKPTSGRATVAGHDVVREP-REV------ 71 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEecCcCh-HHH------
Confidence 357888888865 8999999999999999999999999999998 67899999999998764211 000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+...+ ....+ ..+++.... ............++.+++
T Consensus 72 -~~~i~~~~q~~~~----~~~~t-----------------------------v~~~l~~~~-~~~~~~~~~~~~~~~~~l 116 (220)
T cd03265 72 -RRRIGIVFQDLSV----DDELT-----------------------------GWENLYIHA-RLYGVPGAERRERIDELL 116 (220)
T ss_pred -hhcEEEecCCccc----cccCc-----------------------------HHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 0001111100000 00000 111111110 111122223445788999
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 117 ~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD 163 (220)
T cd03265 117 DFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163 (220)
T ss_pred HHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 999997 45788899999999999999999999999999999999998
No 27
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=233.81 Aligned_cols=173 Identities=29% Similarity=0.410 Sum_probs=127.4
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.+.++|++++|+. +|||+...|+++.|||.+||||||||+||.- +..|+.|.|.++|+++..-....-. ...
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~--LE~P~~G~I~v~geei~~k~~~~G~-l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF--LEKPSAGSIRVNGEEIRLKRDKDGQ-LKP 82 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh--hcCCCCceEEECCeEEEeeeCCCCC-eee
Confidence 4788999999987 8999999999999999999999999999995 7899999999999998532211110 011
Q ss_pred hhHHHHH-HHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVK-LLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~-~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
.+.+.+. ++.+... -++...+|..++.+++ +.+..-..-.....++.++++.
T Consensus 83 ad~~q~~r~Rs~L~m------------------VFQ~FNLWsHmtvLeN---------ViEaPvhVLg~~k~ea~e~Ae~ 135 (256)
T COG4598 83 ADKRQLQRLRTRLGM------------------VFQHFNLWSHMTVLEN---------VIEAPVHVLGVSKAEAIERAEK 135 (256)
T ss_pred CCHHHHHHHHHHhhH------------------hhhhcchhHHHHHHHH---------HHhcchHhhcCCHHHHHHHHHH
Confidence 2222221 2212111 1222345666664433 2222222223455667788999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|..+|+. +..+.++..|||||+||++|||||+.+|+++++|||||+||
T Consensus 136 ~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALD 184 (256)
T COG4598 136 YLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184 (256)
T ss_pred HHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCC
Confidence 99999998 45678999999999999999999999999999999999998
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-35 Score=264.33 Aligned_cols=158 Identities=26% Similarity=0.390 Sum_probs=115.7
Q ss_pred eEEEeeeeEee-CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSP-CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~-~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+|+++|++++| ++ ++||+|.+|++++|+|||||||||||++|+| +..|++|+|.++|+++...+..
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG--l~~p~~G~I~~~g~~i~~~~~~------ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG--LERITSGEIWIGGRVVNELEPA------ 74 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC--CCCCCceEEEECCEECCCCCHH------
Confidence 48899999999 54 8999999999999999999999999999998 6789999999999987533211
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..|.. .+++.++ ..+++.... ............++.+
T Consensus 75 ---~r~ig~v~Q~~------------------------~lfp~~t---------v~eNi~~~~-~~~~~~~~~~~~~~~~ 117 (356)
T PRK11650 75 ---DRDIAMVFQNY------------------------ALYPHMS---------VRENMAYGL-KIRGMPKAEIEERVAE 117 (356)
T ss_pred ---HCCEEEEeCCc------------------------cccCCCC---------HHHHHHhHH-hhcCCCHHHHHHHHHH
Confidence 00011111000 0111111 112221111 1112223344567889
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 118 ~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD 166 (356)
T PRK11650 118 AARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 (356)
T ss_pred HHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999997 57889999999999999999999999999999999999998
No 29
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.3e-34 Score=246.26 Aligned_cols=162 Identities=26% Similarity=0.397 Sum_probs=106.8
Q ss_pred EEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 61 KVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 61 ~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+++|++++|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+.......
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G--l~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG--LDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC--CcCCCceeEEECCEehhhcchhHHHHH
Confidence 4566666653 1 6788999999999999999999999999998 678999999999987743221100000
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....+.+..+...+ ....+ ..+++.... .+..........++.
T Consensus 80 ---~~~~i~~~~q~~~~----~~~~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~~~ 122 (218)
T cd03255 80 ---RRRHIGFVFQSFNL----LPDLT-----------------------------ALENVELPL-LLAGVPKKERRERAE 122 (218)
T ss_pred ---HhhcEEEEeecccc----CCCCc-----------------------------HHHHHHHHH-hhcCCCHHHHHHHHH
Confidence 00000010000000 00001 111111100 111111122345688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 172 (218)
T cd03255 123 ELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172 (218)
T ss_pred HHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCC
Confidence 8999999974 5678899999999999999999999999999999999998
No 30
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.5e-34 Score=246.09 Aligned_cols=160 Identities=28% Similarity=0.376 Sum_probs=107.1
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc-----cCCceeEEEeccccccCchhHHH
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA-----IPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~-----~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +. .|.+|+|.++|+++...+...
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~~~~~~G~i~~~g~~~~~~~~~~-- 76 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR--LNDLIPGAPDEGEVLLDGKDIYDLDVDV-- 76 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh--hcccccCCCCCeEEEECCEEhhhcchHH--
Confidence 357888888864 8899999999999999999999999999998 55 789999999998764322100
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 208 (262)
..+......+.+ .. .++ ..+ ..+++.... ...... ......
T Consensus 77 ---------~~~~~~i~~~~q---~~---------------~~~-~~t---------v~e~l~~~~-~~~~~~~~~~~~~ 118 (227)
T cd03260 77 ---------LELRRRVGMVFQ---KP---------------NPF-PGS---------IYDNVAYGL-RLHGIKLKEELDE 118 (227)
T ss_pred ---------HHHHhhEEEEec---Cc---------------hhc-ccc---------HHHHHHhHH-HhcCCCcHHHHHH
Confidence 000000010000 00 000 000 111111100 011111 112345
Q ss_pred HHHHHHHhCCCChhhhcCC--CCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKS--TKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~--~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+.. ..+++ +.+||||||||++|||||+.+|++|||||||++||
T Consensus 119 ~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 119 RVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred HHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 6788999999974 34454 58999999999999999999999999999999998
No 31
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.5e-34 Score=257.86 Aligned_cols=160 Identities=26% Similarity=0.378 Sum_probs=113.0
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
..|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.... ...
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~-~~~---- 75 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISPDRGKITVLGEPVPSRA-RLA---- 75 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECcccH-HHH----
Confidence 46899999999975 8999999999999999999999999999998 67899999999998764211 000
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..+...+ ....+ ..+++.. +.............++.+
T Consensus 76 ---~~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~-~~~~~~~~~~~~~~~~~~ 118 (303)
T TIGR01288 76 ---RVAIGVVPQFDNL----DPEFT-----------------------------VRENLLV-FGRYFGMSTREIEAVIPS 118 (303)
T ss_pred ---hhcEEEEeccccC----CcCCc-----------------------------HHHHHHH-HHHHcCCCHHHHHHHHHH
Confidence 0011111110000 00011 1111111 011111122223456778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 119 ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 167 (303)
T TIGR01288 119 LLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167 (303)
T ss_pred HHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 89999997 45788899999999999999999999999999999999998
No 32
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.4e-34 Score=243.51 Aligned_cols=148 Identities=28% Similarity=0.404 Sum_probs=101.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+..... ..+.+..+....
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~-------~~i~~~~q~~~~--- 86 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNG--LLGPTSGEVLVDGKDLTKLSLKELR-------RKVGLVFQNPDD--- 86 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEEcccCCHHHHH-------hhceEEecChhh---
Confidence 6788899999999999999999999999998 6789999999999877432211110 111111110000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
.....+ ..+++.... ............++.++++.+|+. ...++++.+|
T Consensus 87 ~~~~~t-----------------------------~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 135 (211)
T cd03225 87 QFFGPT-----------------------------VEEEVAFGL-ENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTL 135 (211)
T ss_pred hcCCCc-----------------------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccC
Confidence 000001 111111000 011111223345688899999997 4567889999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||||||||+|||||+.+|++|||||||++||
T Consensus 136 SgG~~qrv~laral~~~p~llllDEPt~~LD 166 (211)
T cd03225 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999999999999999999999999999998
No 33
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.9e-33 Score=273.75 Aligned_cols=195 Identities=48% Similarity=0.682 Sum_probs=131.7
Q ss_pred CCceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCc-ccCCceeEEEeccccccCchhHH
Q psy2689 55 DNSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 55 ~~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~-~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
+.+.+|.++||+++|++ ++||+|.+|+++||||||||||||||++|+|..+ -.|++|+|.|.+|++...+....
T Consensus 173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 45678999999999976 9999999999999999999999999999998422 16899999999987644333332
Q ss_pred HHHHhhhHHHHHHHHHhh-HHHHhhh--cCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 129 NIVLSADKNRVKLLKECS-KLEQVEA--SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
+.+...+.....++.+.. ...+... ......+.... ... .....+....+..++..+.....+.
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~----------~~~---~~~~~~~~~r~~~~~~~~~~~~~~~ 319 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGA----------NKD---GVDKDAVSQRLEEIYKRLELIDAYT 319 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccc----------ccc---ccchHHHHHHHHHHHHHHHhcCcch
Confidence 222222222222222111 1111000 00000000000 000 0000112234445555666666667
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++..+|..+||.....++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD 376 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 888999999999997666788999999999999999999999999999999999998
No 34
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.1e-34 Score=244.07 Aligned_cols=161 Identities=27% Similarity=0.415 Sum_probs=109.7
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++....... . ..
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~-~----~~ 74 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL--LEEPDSGTIIIDGLKLTDDKKNI-N----EL 74 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEECCccchhH-H----HH
Confidence 57888888864 8899999999999999999999999999998 67899999999998764211000 0 00
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.+.+.+..+... +++..+ ..+++.................++.++++
T Consensus 75 ~~~i~~~~q~~~------------------------~~~~~t---------~~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 121 (213)
T cd03262 75 RQKVGMVFQQFN------------------------LFPHLT---------VLENITLAPIKVKGMSKAEAEERALELLE 121 (213)
T ss_pred HhcceEEecccc------------------------cCCCCc---------HHHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence 001111110000 000000 11111111000111122234456788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 167 (213)
T cd03262 122 KVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167 (213)
T ss_pred HcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 99997 45788899999999999999999999999999999999998
No 35
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-35 Score=241.50 Aligned_cols=162 Identities=26% Similarity=0.365 Sum_probs=121.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.+.++|+.++|++ ++||+|.+||++||+|||||||||.+.|+.| +..|++|+|+++++++...+....
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~G--lv~~d~G~i~ld~~diT~lPm~~R----- 76 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG--LVRPDSGKILLDDEDITKLPMHKR----- 76 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEE--EEecCCceEEECCcccccCChHHH-----
Confidence 4788999999987 8999999999999999999999999999998 789999999999999987764321
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-cCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-SIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 212 (262)
.+-.+.+++|+..+. ..++ ..+++..+.+... .......+.++..
T Consensus 77 -ArlGigYLpQE~SIF----r~Lt-----------------------------V~dNi~~vlE~~~~d~~~~~~~~~l~~ 122 (243)
T COG1137 77 -ARLGIGYLPQEASIF----RKLT-----------------------------VEDNIMAVLEIREKDLKKAERKEELDA 122 (243)
T ss_pred -hhcCcccccccchHh----hcCc-----------------------------HHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence 011122333222211 1111 1222222222221 1111233445779
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+.|++. +..+++..+||||||+|+.|||||+.+|..+|||||++|+|
T Consensus 123 LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVD 171 (243)
T COG1137 123 LLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171 (243)
T ss_pred HHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 99999997 67889999999999999999999999999999999999998
No 36
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.4e-34 Score=244.59 Aligned_cols=162 Identities=25% Similarity=0.344 Sum_probs=110.6
Q ss_pred EEEeeeeEee-CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSP-CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~-~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|.++|+++.| ++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++..........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~i~~~~~~~~~~--- 76 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG--IERPSAGKIWFSGHDITRLKNREVPF--- 76 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEcccCChhHHHH---
Confidence 6788888888 43 8999999999999999999999999999998 67899999999998775322111000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
....+.+..+... +++..+ ..+++... .............++.++
T Consensus 77 -~~~~i~~~~q~~~------------------------~~~~~t---------v~~~l~~~-~~~~~~~~~~~~~~~~~~ 121 (222)
T PRK10908 77 -LRRQIGMIFQDHH------------------------LLMDRT---------VYDNVAIP-LIIAGASGDDIRRRVSAA 121 (222)
T ss_pred -HHhheEEEecCcc------------------------cccccc---------HHHHHHhH-HHhcCCCHHHHHHHHHHH
Confidence 0000111110000 000000 11111110 011111222234467789
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (222)
T PRK10908 122 LDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169 (222)
T ss_pred HHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 9999997 45678899999999999999999999999999999999998
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-34 Score=260.88 Aligned_cols=160 Identities=28% Similarity=0.410 Sum_probs=114.6
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
..|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++..... ..
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G--l~~p~~G~i~i~G~~~~~~~~-~~---- 112 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG--MTSPDAGKITVLGVPVPARAR-LA---- 112 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc--CCCCCceEEEECCEECCcchH-HH----
Confidence 46999999999986 9999999999999999999999999999998 678999999999998743211 00
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..+...+ ....+ ..+++.. +..+..........++.+
T Consensus 113 ---~~~ig~v~q~~~~----~~~~t-----------------------------v~e~l~~-~~~~~~~~~~~~~~~~~~ 155 (340)
T PRK13536 113 ---RARIGVVPQFDNL----DLEFT-----------------------------VRENLLV-FGRYFGMSTREIEAVIPS 155 (340)
T ss_pred ---hccEEEEeCCccC----CCCCc-----------------------------HHHHHHH-HHHHcCCCHHHHHHHHHH
Confidence 0011111100000 00011 1111111 111111222233456778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+++. ...++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 156 ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD 204 (340)
T PRK13536 156 LLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204 (340)
T ss_pred HHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 99999997 45788899999999999999999999999999999999998
No 38
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.1e-34 Score=242.53 Aligned_cols=161 Identities=27% Similarity=0.362 Sum_probs=109.5
Q ss_pred EEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 61 KVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 61 ~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+......
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~i~~~~~~~~~~---- 75 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYK--EELPTSGTIRVNGQDVSDLRGRAIPY---- 75 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEEcccCCHHHHHH----
Confidence 56788888742 7899999999999999999999999999998 67899999999998875432110000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
....+.+..+... +++..+ ..+++.... ............++.+++
T Consensus 76 ~~~~i~~v~q~~~------------------------~~~~~t---------~~~~l~~~~-~~~~~~~~~~~~~~~~~l 121 (214)
T cd03292 76 LRRKIGVVFQDFR------------------------LLPDRN---------VYENVAFAL-EVTGVPPREIRKRVPAAL 121 (214)
T ss_pred HHHheEEEecCch------------------------hccCCc---------HHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 0001111111000 000000 111111111 111112223345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 168 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 999997 45678899999999999999999999999999999999998
No 39
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-34 Score=243.16 Aligned_cols=157 Identities=32% Similarity=0.465 Sum_probs=109.2
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+| +++|+||||||||||+++|+| +..|++|+|.++|+++.... ...
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~-~~~------ 70 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT--LTPPSSGTIRIDGQDVLKQP-QKL------ 70 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhC--CCCCCccEEEECCCccccch-HHH------
Confidence 357888888864 899999999 999999999999999999998 67899999999998764321 100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+...+ ....+ ..+++... ..+...........+.+++
T Consensus 71 -~~~i~~~~q~~~~----~~~~t-----------------------------v~~~l~~~-~~~~~~~~~~~~~~~~~~l 115 (211)
T cd03264 71 -RRRIGYLPQEFGV----YPNFT-----------------------------VREFLDYI-AWLKGIPSKEVKARVDEVL 115 (211)
T ss_pred -HhheEEecCCCcc----cccCC-----------------------------HHHHHHHH-HHHhCCCHHHHHHHHHHHH
Confidence 0111111110000 00001 11111110 0111112222345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 116 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 162 (211)
T cd03264 116 ELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162 (211)
T ss_pred HHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999997 45678899999999999999999999999999999999998
No 40
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3e-34 Score=244.56 Aligned_cols=163 Identities=28% Similarity=0.408 Sum_probs=109.6
Q ss_pred EEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+......
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG--LDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 56777777773 1 7889999999999999999999999999998 67899999999998875432211000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
. ....+.+..+...+ ....+ ..+++.... .+..........++
T Consensus 80 ~---~~~~i~~v~q~~~~----~~~~t-----------------------------v~~~l~~~~-~~~~~~~~~~~~~~ 122 (221)
T TIGR02211 80 L---RNKKLGFIYQFHHL----LPDFT-----------------------------ALENVAMPL-LIGKKSVKEAKERA 122 (221)
T ss_pred H---HHhcEEEEeccccc----CCCCc-----------------------------HHHHHHHHH-HhcCCCHHHHHHHH
Confidence 0 00001111000000 00001 111111100 01111222334567
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 173 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCC
Confidence 8899999997 45688899999999999999999999999999999999998
No 41
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3e-34 Score=243.26 Aligned_cols=157 Identities=29% Similarity=0.404 Sum_probs=110.3
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++......
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~v~~~g~~~~~~~~~-------- 70 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG--LEEPTSGRIYIGGRDVTDLPPK-------- 70 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECCcCCcc--------
Confidence 357888888864 8999999999999999999999999999998 6789999999999887432110
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+...+. ...+ ..+++... ........+....++.+++
T Consensus 71 -~~~i~~~~q~~~~~----~~~t-----------------------------v~~~l~~~-~~~~~~~~~~~~~~~~~~l 115 (213)
T cd03301 71 -DRDIAMVFQNYALY----PHMT-----------------------------VYDNIAFG-LKLRKVPKDEIDERVREVA 115 (213)
T ss_pred -cceEEEEecChhhc----cCCC-----------------------------HHHHHHHH-HHhcCCCHHHHHHHHHHHH
Confidence 00011111100000 0001 11111111 0111112223345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 116 ~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 116 ELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999997 45788899999999999999999999999999999999998
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.2e-34 Score=261.44 Aligned_cols=158 Identities=27% Similarity=0.357 Sum_probs=116.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+|++++|+|||||||||||++|+| +..|++|+|.++|+++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG--l~~p~~G~I~i~g~~~~~~~~~------- 74 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG--LERQTAGTIYQGGRDITRLPPQ------- 74 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC--CCCCCceEEEECCEECCCCCHH-------
Confidence 4889999999976 8999999999999999999999999999998 6789999999999987532211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..|.. .+++.++ ..+++..... ...........++.++
T Consensus 75 --~r~ig~v~Q~~------------------------~lfp~~t---------v~eNi~~~~~-~~~~~~~~~~~~~~~~ 118 (353)
T TIGR03265 75 --KRDYGIVFQSY------------------------ALFPNLT---------VADNIAYGLK-NRGMGRAEVAERVAEL 118 (353)
T ss_pred --HCCEEEEeCCc------------------------ccCCCCc---------HHHHHHHHHH-hcCCCHHHHHHHHHHH
Confidence 00011111100 0111111 1122221111 1122233456689999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 119 l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD 166 (353)
T TIGR03265 119 LDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166 (353)
T ss_pred HHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999997 46889999999999999999999999999999999999998
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-34 Score=260.57 Aligned_cols=162 Identities=29% Similarity=0.401 Sum_probs=113.0
Q ss_pred EEEeeeeEeeC----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~G--l~~p~~G~I~~~g~~i~~~~~~~~~- 78 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINL--LERPTSGRVLVDGQDLTALSEKELR- 78 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECCcCCHHHHH-
Confidence 67888888886 2 8899999999999999999999999999998 6789999999999987543221110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+......+.+ .. .+++..+ ..+++... ..+..........++
T Consensus 79 ---------~~~~~ig~v~q---~~---------------~l~~~~t---------v~eni~~~-~~~~~~~~~~~~~~~ 121 (343)
T PRK11153 79 ---------KARRQIGMIFQ---HF---------------NLLSSRT---------VFDNVALP-LELAGTPKAEIKARV 121 (343)
T ss_pred ---------HHhcCEEEEeC---CC---------------ccCCCCc---------HHHHHHHH-HHHcCCCHHHHHHHH
Confidence 00000111100 00 0000000 11112111 111122222344578
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD 172 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 8899999997 45788899999999999999999999999999999999998
No 44
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-34 Score=232.73 Aligned_cols=156 Identities=30% Similarity=0.449 Sum_probs=116.6
Q ss_pred EEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 60 IKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
|.+++|.++|+. ..+++|..||+++|+|||||||||||++|+| +..|.+|.|+++|++....++. .
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG--F~~P~~G~i~i~g~d~t~~~P~--------~- 70 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAG--FETPASGEILINGVDHTASPPA--------E- 70 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHh--ccCCCCceEEEcCeecCcCCcc--------c-
Confidence 567788888876 6788999999999999999999999999998 8999999999999998654432 1
Q ss_pred HHHHHHHHhhHHH-HhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 137 NRVKLLKECSKLE-QVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 137 ~~~~~~~~~~~l~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.-+..+.|++.+. .+ ....|+.+..... + ++ ......++..++.
T Consensus 71 RPVSmlFQEnNLFaHL----tV~qNigLGl~P~-----------------------------L-kL-~a~~r~~v~~aa~ 115 (231)
T COG3840 71 RPVSMLFQENNLFAHL----TVAQNIGLGLSPG-----------------------------L-KL-NAEQREKVEAAAA 115 (231)
T ss_pred CChhhhhhccccchhh----hhhhhhcccCCcc-----------------------------c-cc-CHHHHHHHHHHHH
Confidence 1123333333321 11 1112222221100 0 01 1245567889999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...+|.+.+|||||||||+|||+|+.+-+||+||||+++||
T Consensus 116 ~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 116 QVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred HhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcC
Confidence 99997 46788899999999999999999999999999999999998
No 45
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=260.33 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=116.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|+++.|++ ++||+|.+||+++|+|||||||||||++|+| +..|++|+|.++|+++...+..
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG--l~~p~~G~I~~~g~~i~~~~~~------- 76 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG--LEKPTEGQIFIDGEDVTHRSIQ------- 76 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC--CCCCCceEEEECCEECCCCCHH-------
Confidence 5889999999975 8999999999999999999999999999998 7899999999999987532210
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..|.. .+++.++ ..+++.... ............++.++
T Consensus 77 --~r~ig~vfQ~~------------------------~lfp~~t---------v~eNi~~~l-~~~~~~~~~~~~~v~~~ 120 (351)
T PRK11432 77 --QRDICMVFQSY------------------------ALFPHMS---------LGENVGYGL-KMLGVPKEERKQRVKEA 120 (351)
T ss_pred --HCCEEEEeCCc------------------------ccCCCCC---------HHHHHHHHH-hHcCCCHHHHHHHHHHH
Confidence 00011111100 0111111 112222111 11122333455688999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD 168 (351)
T PRK11432 121 LELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168 (351)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 9999997 46789999999999999999999999999999999999998
No 46
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.3e-34 Score=255.47 Aligned_cols=159 Identities=28% Similarity=0.446 Sum_probs=114.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.++++|++++|++ |+||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++..... .+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G--l~~~~~G~i~i~g~~~~~~~~-~~----- 73 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG--YLPPDSGSVQVCGEDVLQNPK-EV----- 73 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEcccChH-HH-----
Confidence 4789999999975 8999999999999999999999999999998 678999999999987743211 00
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.+.+.+..+... +++..+ ..+++. ....+..........++.++
T Consensus 74 --~~~ig~~~q~~~------------------------l~~~~t---------v~e~l~-~~~~~~~~~~~~~~~~~~~~ 117 (301)
T TIGR03522 74 --QRNIGYLPEHNP------------------------LYLDMY---------VREYLQ-FIAGIYGMKGQLLKQRVEEM 117 (301)
T ss_pred --HhceEEecCCCC------------------------CCCCCc---------HHHHHH-HHHHHcCCCHHHHHHHHHHH
Confidence 011111111000 000000 111121 11112222223334568899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+.. ..++++..|||||||||+|||||+.+|++|||||||+|||
T Consensus 118 l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD 165 (301)
T TIGR03522 118 IELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165 (301)
T ss_pred HHHCCCch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99999984 5688899999999999999999999999999999999998
No 47
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.8e-34 Score=250.60 Aligned_cols=164 Identities=26% Similarity=0.364 Sum_probs=113.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+......
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~~~~--- 81 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG--QIAPDHGEILFDGENIPAMSRSRLYT--- 81 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEEccccChhhHHH---
Confidence 5889999999975 8999999999999999999999999999998 67899999999998775332110000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
....+.+..+...+ ....+ ..+++.................++.++
T Consensus 82 -~~~~i~~v~q~~~~----~~~~t-----------------------------v~enl~~~~~~~~~~~~~~~~~~~~~~ 127 (269)
T PRK11831 82 -VRKRMSMLFQSGAL----FTDMN-----------------------------VFDNVAYPLREHTQLPAPLLHSTVMMK 127 (269)
T ss_pred -HhhcEEEEeccccc----CCCCC-----------------------------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 00001111100000 00001 111111111001111122234567788
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 128 l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 175 (269)
T PRK11831 128 LEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175 (269)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 9999997 45788899999999999999999999999999999999998
No 48
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.9e-34 Score=243.38 Aligned_cols=158 Identities=30% Similarity=0.418 Sum_probs=109.4
Q ss_pred EEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++... ....
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~-~~~~-- 76 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG--LLEPDAGFATVDGFDVVKE-PAEA-- 76 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CcCCCCceEEECCEEcccC-HHHH--
Confidence 567777777741 6789999999999999999999999999998 6789999999999877421 1000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+.+.+..+...+ ....+ ..+++... .............++
T Consensus 77 -----~~~i~~~~q~~~~----~~~~t-----------------------------v~e~l~~~-~~~~~~~~~~~~~~~ 117 (218)
T cd03266 77 -----RRRLGFVSDSTGL----YDRLT-----------------------------ARENLEYF-AGLYGLKGDELTARL 117 (218)
T ss_pred -----HhhEEEecCCccc----CcCCC-----------------------------HHHHHHHH-HHHcCCCHHHHHHHH
Confidence 0011111100000 00000 11111111 111112222345678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 118 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 118 EELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 8899999997 45778899999999999999999999999999999999998
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-34 Score=242.45 Aligned_cols=155 Identities=31% Similarity=0.474 Sum_probs=108.8
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
++++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~----~~------ 68 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG--IILPDSGEVLFDGKPLDI----AA------ 68 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCCchhH----HH------
Confidence 357788888864 8899999999999999999999999999998 678999999999887531 00
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+...+ ....+ ..+++.. ...+...........+.+++
T Consensus 69 -~~~i~~~~q~~~~----~~~~t-----------------------------v~e~l~~-~~~~~~~~~~~~~~~~~~~l 113 (210)
T cd03269 69 -RNRIGYLPEERGL----YPKMK-----------------------------VIDQLVY-LAQLKGLKKEEARRRIDEWL 113 (210)
T ss_pred -HccEEEeccCCcC----CcCCc-----------------------------HHHHHHH-HHHHcCCChHHHHHHHHHHH
Confidence 0001111000000 00001 1111111 11111122223455788899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 114 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 114 ERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 999997 45678899999999999999999999999999999999998
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.2e-34 Score=247.04 Aligned_cols=169 Identities=27% Similarity=0.391 Sum_probs=111.2
Q ss_pred EEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|.++|++++|+ + ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~---- 75 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR--LVEPSSGSILLEGTDITKLRGKKLR---- 75 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CcCCCccEEEECCEEhhhCCHHHHH----
Confidence 67888888886 3 8999999999999999999999999999998 6789999999999877432211000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
.....+.+..+...+ ....+ ..|+.+.... .......+..........++.+
T Consensus 76 ~~~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 128 (243)
T TIGR02315 76 KLRRRIGMIFQHYNL----IERLTVLENVLHGRLG-----------------------YKPTWRSLLGRFSEEDKERALS 128 (243)
T ss_pred HHHhheEEEcCCCcc----cccccHHHHHhhcccc-----------------------cccchhhhhccccHHHHHHHHH
Confidence 000011111110000 00011 1111100000 0000000000111223456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 129 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 129 ALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred HHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999997 45788899999999999999999999999999999999998
No 51
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4e-34 Score=246.12 Aligned_cols=159 Identities=27% Similarity=0.420 Sum_probs=109.0
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.........
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~------ 73 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG--FLRPTSGSVLFDGEDITGLPPHEIA------ 73 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcC--CCCCCCceEEECCEECCCCCHHHHH------
Confidence 56788888764 8899999999999999999999999999998 6789999999999887543211100
Q ss_pred HHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc---------CChhc
Q psy2689 136 KNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS---------IEADA 205 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~ 205 (262)
...+.+..+...+ ....+ ..|+.+ ....... .....
T Consensus 74 ~~~i~~v~q~~~l----~~~~tv~~~l~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 119 (236)
T cd03219 74 RLGIGRTFQIPRL----FPELTVLENVMV------------------------------AAQARTGSGLLLARARREERE 119 (236)
T ss_pred hcCEEEEeccccc----ccCCCHHHHHHH------------------------------HHhhccccccccccccccHHH
Confidence 0001111110000 00111 111111 0000000 01122
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 175 (236)
T cd03219 120 ARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175 (236)
T ss_pred HHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 345688899999997 45678899999999999999999999999999999999998
No 52
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.2e-34 Score=246.66 Aligned_cols=169 Identities=27% Similarity=0.376 Sum_probs=112.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++.........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~---- 76 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL--LEQPEAGTIRVGDITIDTARSLSQQ---- 76 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCeEEEECCEEccccccccch----
Confidence 4788999999865 8999999999999999999999999999998 5789999999999887432100000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
......+......+.+ .. .+++..+ ..+++.................++.++
T Consensus 77 -~~~~~~~~~~i~~v~q---~~---------------~~~~~~t---------v~e~l~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T PRK11264 77 -KGLIRQLRQHVGFVFQ---NF---------------NLFPHRT---------VLENIIEGPVIVKGEPKEEATARAREL 128 (250)
T ss_pred -hhHHHHhhhhEEEEec---Cc---------------ccCCCCC---------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0000000000010000 00 0000000 111111100001111222334567889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 129 l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 129 LAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred HHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 9999997 45678899999999999999999999999999999999998
No 53
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-34 Score=245.01 Aligned_cols=166 Identities=28% Similarity=0.399 Sum_probs=112.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-hHHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~~~~~~~ 132 (262)
+|.++|+++.|++ ++||+|.+||+++|+||||||||||+++|+| +..|++|+|.++|.++..... .... .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~~--~ 77 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNL--LEMPRSGTLNIAGNHFDFSKTPSDKA--I 77 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEecccccccchhh--H
Confidence 5788999999965 8999999999999999999999999999998 678999999999987632110 0000 0
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....+.+.+..+...+ ....+ ..+++......+..........++.+
T Consensus 78 ~~~~~~i~~~~q~~~~----~~~~t-----------------------------v~e~i~~~~~~~~~~~~~~~~~~~~~ 124 (242)
T PRK11124 78 RELRRNVGMVFQQYNL----WPHLT-----------------------------VQQNLIEAPCRVLGLSKDQALARAEK 124 (242)
T ss_pred HHHHhheEEEecCccc----cCCCc-----------------------------HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0000011111110000 00001 11111110001111112223456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 125 ~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 125 LLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 99999997 45788899999999999999999999999999999999998
No 54
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.5e-34 Score=263.32 Aligned_cols=161 Identities=32% Similarity=0.434 Sum_probs=114.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+||++||+||||||||||||+|+| +..|++|+|.++|.++.........
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG--ll~p~sG~I~l~G~~i~~~~~~~~~---- 76 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING--TLTPTAGTVLVAGDDVEALSARAAS---- 76 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc--CCCCCCcEEEECCEEcCcCCHHHHh----
Confidence 5889999999976 8999999999999999999999999999998 6789999999999987543321111
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC--hhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE--ADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 210 (262)
+.+.+..+...+ ...+++ .|+.+.. ........ ......++
T Consensus 77 ---~~ig~v~q~~~l----~~~~tv~e~v~~~~-----------------------------~~~~~~~~~~~~~~~~~v 120 (402)
T PRK09536 77 ---RRVASVPQDTSL----SFEFDVRQVVEMGR-----------------------------TPHRSRFDTWTETDRAAV 120 (402)
T ss_pred ---cceEEEccCCCC----CCCCCHHHHHHhcc-----------------------------chhcccccCCCHHHHHHH
Confidence 011111111000 001111 1111100 00000011 12345678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+|||||||||+|||||+++|++|||||||++||
T Consensus 121 ~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD 171 (402)
T PRK09536 121 ERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171 (402)
T ss_pred HHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 8999999997 56789999999999999999999999999999999999998
No 55
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5e-34 Score=244.92 Aligned_cols=160 Identities=28% Similarity=0.404 Sum_probs=110.3
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~----- 73 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG--LVKPDSGKILLDGQDITKLPMHKRA----- 73 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEecccCCHhHHH-----
Confidence 357888888864 8999999999999999999999999999998 6789999999999876432211000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+...+ ....+ ..+++.... ............++.+++
T Consensus 74 -~~~i~~~~q~~~~----~~~~t-----------------------------v~~~l~~~~-~~~~~~~~~~~~~~~~~l 118 (232)
T cd03218 74 -RLGIGYLPQEASI----FRKLT-----------------------------VEENILAVL-EIRGLSKKEREEKLEELL 118 (232)
T ss_pred -hccEEEecCCccc----cccCc-----------------------------HHHHHHHHH-HhcCCCHHHHHHHHHHHH
Confidence 0001011100000 00000 111111110 011111122345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 119 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 165 (232)
T cd03218 119 EEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165 (232)
T ss_pred HHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 999997 46788899999999999999999999999999999999998
No 56
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-34 Score=246.69 Aligned_cols=158 Identities=32% Similarity=0.396 Sum_probs=111.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++......
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~------- 72 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSGTILFGGEDATDVPVQ------- 72 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECCcCCcc-------
Confidence 4788999999975 8999999999999999999999999999998 6789999999999876432110
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC----ChhcHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI----EADAAEPR 209 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~ 209 (262)
...+.+..+...+ ....+ ..+++.... ..... .......+
T Consensus 73 --~~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~~~~~ 116 (239)
T cd03296 73 --ERNVGFVFQHYAL----FRHMT-----------------------------VFDNVAFGL-RVKPRSERPPEAEIRAK 116 (239)
T ss_pred --ccceEEEecCCcc----cCCCC-----------------------------HHHHHhhhh-hhccccccCCHHHHHHH
Confidence 0001111100000 00011 011111000 00000 11123346
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 117 ~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD 168 (239)
T cd03296 117 VHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168 (239)
T ss_pred HHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 78899999997 45678899999999999999999999999999999999998
No 57
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.4e-34 Score=245.11 Aligned_cols=158 Identities=31% Similarity=0.466 Sum_probs=110.5
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+....
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~i~~~~~~~~------ 73 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTR--LYVAQEGQISVAGHDLRRAPRAAL------ 73 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CcCCCceEEEECCEEcccCChhhh------
Confidence 678888888864 8999999999999999999999999999998 678999999999987643211100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
..+.+..+...+ ....+ ..+++.. ...............+.+++
T Consensus 74 --~~i~~~~q~~~~----~~~~t-----------------------------~~~~l~~-~~~~~~~~~~~~~~~~~~~l 117 (236)
T TIGR03864 74 --ARLGVVFQQPTL----DLDLS-----------------------------VRQNLRY-HAALHGLSRAEARERIAALL 117 (236)
T ss_pred --hhEEEeCCCCCC----cccCc-----------------------------HHHHHHH-HHHhcCCCHHHHHHHHHHHH
Confidence 001111000000 00000 1111111 00111112222345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 118 ~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD 164 (236)
T TIGR03864 118 ARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164 (236)
T ss_pred HHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 999997 45678899999999999999999999999999999999998
No 58
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-34 Score=245.92 Aligned_cols=159 Identities=29% Similarity=0.443 Sum_probs=109.4
Q ss_pred EEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 61 KVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 61 ~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+....
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~------ 73 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR--LIEPTSGEIFIDGEDIREQDPVEL------ 73 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCeEcCcCChHHh------
Confidence 46677777642 7888999999999999999999999999998 678999999999987753221110
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+... +++..+ ..+++... ..+..........++.+++
T Consensus 74 -~~~i~~~~q~~~------------------------~~~~~t---------v~e~l~~~-~~~~~~~~~~~~~~~~~~l 118 (242)
T cd03295 74 -RRKIGYVIQQIG------------------------LFPHMT---------VEENIALV-PKLLKWPKEKIRERADELL 118 (242)
T ss_pred -hcceEEEccCcc------------------------ccCCCc---------HHHHHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 001111111000 000000 11111111 1111122223445688999
Q ss_pred HhCCCCh-hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTK-EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~-~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 119 ~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 167 (242)
T cd03295 119 ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167 (242)
T ss_pred HHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 9999974 35688899999999999999999999999999999999998
No 59
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-34 Score=239.29 Aligned_cols=174 Identities=27% Similarity=0.355 Sum_probs=130.2
Q ss_pred ccCCCceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-
Q psy2689 52 TVDDNSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD- 125 (262)
Q Consensus 52 ~~~~~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~- 125 (262)
.+......|.++|+++.|++ |+|++|++||..+|+|||||||||||++++| ...|++|.+.+.|+....-+.
T Consensus 24 ~~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~--~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 24 PIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG--EHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CCCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhc--ccCCCCCceeeeeeeccCCcch
Confidence 34445567999999999987 9999999999999999999999999999998 578889999999998765443
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
..++..++..... +.+-......+.++++++.+..++++.+ ...+.
T Consensus 102 ~elrk~IG~vS~~---------L~~~~~~~~~v~dvVlSg~~~siG~y~~-------------------------~~~~~ 147 (257)
T COG1119 102 FELRKRIGLVSSE---------LHERFRVRETVRDVVLSGFFASIGIYQE-------------------------DLTAE 147 (257)
T ss_pred HHHHHHhCccCHH---------HHhhcccccccceeeeeccccccccccc-------------------------CCCHH
Confidence 3333222222111 1111112334556666654443332211 11223
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++..+++.+|+. +..+++..+||-||||||.|||||+.+|.+|||||||+|||
T Consensus 148 ~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLD 203 (257)
T COG1119 148 DLAAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203 (257)
T ss_pred HHHHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 456788999999997 58899999999999999999999999999999999999998
No 60
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-34 Score=244.58 Aligned_cols=164 Identities=27% Similarity=0.402 Sum_probs=111.9
Q ss_pred eEEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
+++++|+++.|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG--LDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEEcCcCCHHHHH
Confidence 478888888884 1 7899999999999999999999999999998 6789999999999887543221100
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
... ...+.+..+...+ ....+ ..+++.... .+..........+
T Consensus 83 ~~~---~~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~ 125 (233)
T PRK11629 83 ELR---NQKLGFIYQFHHL----LPDFT-----------------------------ALENVAMPL-LIGKKKPAEINSR 125 (233)
T ss_pred HHH---hccEEEEecCccc----CCCCC-----------------------------HHHHHHHHH-HhcCCCHHHHHHH
Confidence 000 0000000000000 00001 111111100 0111122234456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 126 ~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD 177 (233)
T PRK11629 126 ALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177 (233)
T ss_pred HHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 88999999997 45678899999999999999999999999999999999998
No 61
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=259.78 Aligned_cols=159 Identities=30% Similarity=0.430 Sum_probs=114.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+||+++|+|||||||||||++|+| +..|++|+|.++|+++......
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG--l~~p~~G~I~i~g~~i~~~~~~------- 72 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG--LEHQTSGHIRFHGTDVSRLHAR------- 72 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCCCCHH-------
Confidence 4789999999975 8999999999999999999999999999998 6789999999999987532110
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH---hcCChhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL---KSIEADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ 210 (262)
...+.+..|... +++.++ ..+++....... ..........++
T Consensus 73 --~r~i~~v~Q~~~------------------------l~p~~t---------v~eni~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
T PRK10851 73 --DRKVGFVFQHYA------------------------LFRHMT---------VFDNIAFGLTVLPRRERPNAAAIKAKV 117 (353)
T ss_pred --HCCEEEEecCcc------------------------cCCCCc---------HHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 000111111000 001111 111121111000 011223345678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 118 ~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD 168 (353)
T PRK10851 118 TQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168 (353)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 8999999997 56789999999999999999999999999999999999998
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-34 Score=245.55 Aligned_cols=168 Identities=28% Similarity=0.390 Sum_probs=109.0
Q ss_pred EEeeeeEeeC--C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 61 KVENFSLSPC--L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 61 ~i~~v~~~~~--~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
+++|++++|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+......
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~~---- 75 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALRQ---- 75 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CcCCCCceEEECCEeccccCHhHHHH----
Confidence 4677777774 2 7889999999999999999999999999998 67899999999998875332100000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
....+.+..+...+ ....+ ..|+.+.... ....+..+..........++.++
T Consensus 76 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 128 (241)
T cd03256 76 LRRQIGMIFQQFNL----IERLSVLENVLSGRLG-----------------------RRSTWRSLFGLFPKEEKQRALAA 128 (241)
T ss_pred HHhccEEEcccCcc----cccCcHHHHHHhhhcc-----------------------cchhhhhhcccCcHHHHHHHHHH
Confidence 00011111111000 00011 1111110000 00000000011112334568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 129 l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 176 (241)
T cd03256 129 LERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176 (241)
T ss_pred HHHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 9999997 45678899999999999999999999999999999999998
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7e-34 Score=242.16 Aligned_cols=157 Identities=27% Similarity=0.386 Sum_probs=107.7
Q ss_pred EEeeeeEeeC---C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 61 KVENFSLSPC---L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 61 ~i~~v~~~~~---~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++|+++.|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.... ...
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~-~~~----- 73 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG--ELRPTSGTAYINGYSIRTDR-KAA----- 73 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEecccch-HHH-----
Confidence 4667777774 2 7889999999999999999999999999998 67899999999998764211 000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..+...+ ....+ ..+++... .............++.++
T Consensus 74 --~~~i~~v~q~~~~----~~~~t-----------------------------v~~~l~~~-~~~~~~~~~~~~~~~~~~ 117 (220)
T cd03263 74 --RQSLGYCPQFDAL----FDELT-----------------------------VREHLRFY-ARLKGLPKSEIKEEVELL 117 (220)
T ss_pred --hhhEEEecCcCCc----cccCC-----------------------------HHHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 0011111110000 00000 11111111 111112222334568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 118 l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 165 (220)
T cd03263 118 LRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165 (220)
T ss_pred HHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 9999997 45678899999999999999999999999999999999998
No 64
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.7e-33 Score=253.58 Aligned_cols=167 Identities=22% Similarity=0.369 Sum_probs=113.9
Q ss_pred eEEEeeeeEeeC-------------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 59 DIKVENFSLSPC-------------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 59 ~i~i~~v~~~~~-------------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.|+++|++++|+ . ++||+|.+||++||+|+||||||||+++|+| +..|++|+|.|+|+++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G--l~~p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG--LVKATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC--CCCCCCcEEEECCEEC
Confidence 467777777663 1 7889999999999999999999999999998 6789999999999987
Q ss_pred ccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-
Q psy2689 121 EASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK- 199 (262)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 199 (262)
...+..... .+......+. +......+..++ ..+++........
T Consensus 86 ~~~~~~~~~----------~~r~~i~~v~---Q~~~~~l~p~~t----------------------v~~~i~~~l~~~~~ 130 (331)
T PRK15079 86 LGMKDDEWR----------AVRSDIQMIF---QDPLASLNPRMT----------------------IGEIIAEPLRTYHP 130 (331)
T ss_pred CcCCHHHHH----------HHhCceEEEe---cCchhhcCCCCC----------------------HHHHHHHHHHHhcc
Confidence 544321110 0000111110 000000000000 1112221111111
Q ss_pred cCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 200 SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 200 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.........++.++++.+|+.....++++++|||||||||+|||||+.+|++|||||||++||
T Consensus 131 ~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 131 KLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 123334456788999999996556789999999999999999999999999999999999998
No 65
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.2e-34 Score=244.65 Aligned_cols=162 Identities=30% Similarity=0.374 Sum_probs=111.6
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|.++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++........ .
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~-----~ 74 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK--LEEITSGDLIVDGLKVNDPKVDER-----L 74 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECCcCChhHH-----H
Confidence 678899998864 8999999999999999999999999999998 678999999999988743211000 0
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
..+.+.+..+...+ ....+ ..+++.................++.+++
T Consensus 75 ~~~~i~~~~q~~~~----~~~~t-----------------------------v~~~l~~~~~~~~~~~~~~~~~~~~~~l 121 (240)
T PRK09493 75 IRQEAGMVFQQFYL----FPHLT-----------------------------ALENVMFGPLRVRGASKEEAEKQARELL 121 (240)
T ss_pred HhhceEEEeccccc----CCCCc-----------------------------HHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence 00011111110000 00001 1111111000011112223445678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 168 (240)
T PRK09493 122 AKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168 (240)
T ss_pred HHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999997 45688899999999999999999999999999999999998
No 66
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=244.03 Aligned_cols=156 Identities=29% Similarity=0.433 Sum_probs=110.6
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.++++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+....+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~~~---- 76 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR--LIDPTEGSILIDGVDIKTIDVIDLR---- 76 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEEhhhcChHHhh----
Confidence 4788999999864 8999999999999999999999999999998 6789999999999887432211100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+..+...+ ++ .+ ..+++... .... .....++.++
T Consensus 77 ---~~i~~~~q~~~~------------------------~~-~t---------v~e~l~~~-~~~~----~~~~~~~~~~ 114 (241)
T PRK14250 77 ---RKIGMVFQQPHL------------------------FE-GT---------VKDNIEYG-PMLK----GEKNVDVEYY 114 (241)
T ss_pred ---hcEEEEecCchh------------------------ch-hh---------HHHHHhcc-hhhc----CcHHHHHHHH
Confidence 001111000000 00 00 00111000 0000 1123467888
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 115 l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 163 (241)
T PRK14250 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163 (241)
T ss_pred HHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999996446678899999999999999999999999999999999998
No 67
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=263.65 Aligned_cols=169 Identities=40% Similarity=0.561 Sum_probs=118.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec--------cccccCch
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE--------QEVEASDD 125 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~--------~~i~~~~~ 125 (262)
+|.++|++++|++ ++||+|.+|++|||||+||||||||||+|+| ...|++|+|...+ |+....+.
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG--~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG--ELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcC--CCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence 5899999999976 8999999999999999999999999999998 4577777765544 44433322
Q ss_pred -hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh
Q psy2689 126 -SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204 (262)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (262)
...+.++........+..+...+... ..+ . ....+..+...+..+..+
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~-~~~---------------------------~---~~~~~~~l~~~~~~~~~~ 129 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYAL-LAD---------------------------P---DDELLAELEALLEELDGW 129 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHh-ccc---------------------------c---hhHHHHHHHHHHHhhccc
Confidence 22222222222222222211111100 000 0 111122233333444556
Q ss_pred cHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++..+|..+|++.. ++++++||||||+||+||+||+.+|++|||||||||||
T Consensus 130 ~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD 185 (530)
T COG0488 130 TLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185 (530)
T ss_pred chHHHHHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 778899999999999854 88999999999999999999999999999999999999
No 68
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-34 Score=247.95 Aligned_cols=154 Identities=27% Similarity=0.330 Sum_probs=110.6
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ |+||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++.....
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~--------- 70 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG--FVPYQHGSITLDGKPVEGPGA--------- 70 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCCCCC---------
Confidence 678999999864 8999999999999999999999999999998 678999999999987642110
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
.+.+..+...+ ....+ ..+++.... ............++.+++
T Consensus 71 ---~~~~v~q~~~~----~~~~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~~~~~l 113 (255)
T PRK11248 71 ---ERGVVFQNEGL----LPWRN-----------------------------VQDNVAFGL-QLAGVEKMQRLEIAHQML 113 (255)
T ss_pred ---cEEEEeCCCcc----CCCCc-----------------------------HHHHHHhHH-HHcCCCHHHHHHHHHHHH
Confidence 00000000000 00001 011111000 011112223345688999
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 114 ~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 114 KKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred HHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 999997 45678899999999999999999999999999999999998
No 69
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-34 Score=241.54 Aligned_cols=153 Identities=33% Similarity=0.438 Sum_probs=105.8
Q ss_pred EEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 61 KVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 61 ~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+++|+++.|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++....
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~------- 72 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG--LERPTSGEVLVDGEPVTGPG------- 72 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECcccc-------
Confidence 4566666663 1 6788999999999999999999999999998 67899999999998763210
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
..+.+..+...+ ....+ ..+++.... ............++.
T Consensus 73 -----~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~~~ 113 (220)
T cd03293 73 -----PDRGYVFQQDAL----LPWLT-----------------------------VLDNVALGL-ELQGVPKAEARERAE 113 (220)
T ss_pred -----CcEEEEeccccc----ccCCC-----------------------------HHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 001111100000 00011 011111000 011112223345688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 114 ~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD 163 (220)
T cd03293 114 ELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163 (220)
T ss_pred HHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 899999997 45678899999999999999999999999999999999998
No 70
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=260.70 Aligned_cols=158 Identities=28% Similarity=0.408 Sum_probs=114.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+|++++|+|||||||||||++|+| +..|++|+|.++|+++......
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG--l~~p~~G~I~~~g~~i~~~~~~------- 73 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LEDITSGDLFIGEKRMNDVPPA------- 73 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECCCCCHh-------
Confidence 3789999999975 8999999999999999999999999999998 6789999999999887432110
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..+... +++..+ ..+++.... ............++.++
T Consensus 74 --~~~i~~v~Q~~~------------------------l~~~~t---------v~eni~~~~-~~~~~~~~~~~~~~~~~ 117 (369)
T PRK11000 74 --ERGVGMVFQSYA------------------------LYPHLS---------VAENMSFGL-KLAGAKKEEINQRVNQV 117 (369)
T ss_pred --HCCEEEEeCCcc------------------------cCCCCC---------HHHHHHhHH-hhcCCCHHHHHHHHHHH
Confidence 000111110000 000111 111221111 11112223345678899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 118 l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 118 AEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred HHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999997 46788999999999999999999999999999999999998
No 71
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=252.58 Aligned_cols=167 Identities=26% Similarity=0.367 Sum_probs=113.4
Q ss_pred eEEEeeeeEeeC----------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccC
Q psy2689 59 DIKVENFSLSPC----------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 123 (262)
Q Consensus 59 ~i~i~~v~~~~~----------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~ 123 (262)
.|+++|+++.|. . +|||+|.+||++||+|+||||||||+++|+| +..|++|+|.++|+++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g--l~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM--IETPTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCcEEEECCEEcCcC
Confidence 366777777763 1 7888999999999999999999999999998 5678999999999987543
Q ss_pred chhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh
Q psy2689 124 DDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203 (262)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (262)
+..... .+......+ .+......+..+. ....+............
T Consensus 83 ~~~~~~----------~~r~~i~~v---~Q~~~~~l~p~~~----------------------v~~~l~~~~~~~~~~~~ 127 (327)
T PRK11308 83 DPEAQK----------LLRQKIQIV---FQNPYGSLNPRKK----------------------VGQILEEPLLINTSLSA 127 (327)
T ss_pred CHHHHH----------HHhCCEEEE---EcCchhhcCCccC----------------------HHHHHHHHHHHccCCCH
Confidence 321110 011001111 1111000111000 11111111111111223
Q ss_pred hcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.....++.++|+.+|+.....++++++|||||||||+|||||+.+|++||+||||++||
T Consensus 128 ~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 128 AERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred HHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 34456789999999997556789999999999999999999999999999999999998
No 72
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-33 Score=236.61 Aligned_cols=155 Identities=25% Similarity=0.371 Sum_probs=110.3
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.....
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~p~~G~v~~~g~~~~~~~~--------- 70 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG--LARPDAGEVLWQGEPIRRQRD--------- 70 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEEcccchH---------
Confidence 678899999875 8999999999999999999999999999998 678999999999987642110
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
.+......+.+ .. .+++..+ ..+++.... .... .....++.+++
T Consensus 71 -----~~~~~~~~~~~---~~---------------~~~~~~t---------v~e~l~~~~-~~~~---~~~~~~~~~~l 114 (204)
T PRK13538 71 -----EYHQDLLYLGH---QP---------------GIKTELT---------ALENLRFYQ-RLHG---PGDDEALWEAL 114 (204)
T ss_pred -----HhhhheEEeCC---cc---------------ccCcCCc---------HHHHHHHHH-HhcC---ccHHHHHHHHH
Confidence 00000000000 00 0000000 111111111 1111 12345688899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 115 ~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 115 AQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 999997 45688899999999999999999999999999999999998
No 73
>KOG0058|consensus
Probab=100.00 E-value=2.4e-34 Score=272.15 Aligned_cols=165 Identities=28% Similarity=0.384 Sum_probs=125.8
Q ss_pred CceeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhH
Q psy2689 56 NSVDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 56 ~~~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~ 127 (262)
..-.|+|+||+|+|.. |+||+|++||++|||||||+||||+.++|.+ +|.|++|+|.+||.++...+...
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r--fY~PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR--FYDPTSGRILLDGVPISDINHKY 539 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCCeEEECCeehhhcCHHH
Confidence 3446999999999974 8999999999999999999999999999997 89999999999999998777655
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
++.. +.+..|+..+. +....+||.+..+.. ..+. +...+..
T Consensus 540 lr~~-------Ig~V~QEPvLF----s~sI~eNI~YG~~~~------------------t~e~----------i~~AAk~ 580 (716)
T KOG0058|consen 540 LRRK-------IGLVGQEPVLF----SGSIRENIAYGLDNA------------------TDEE----------IEAAAKM 580 (716)
T ss_pred HHHH-------eeeeeccceee----cccHHHHHhcCCCCC------------------CHHH----------HHHHHHH
Confidence 4433 33333333321 334456766653211 0001 1112334
Q ss_pred HHHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+++.+..| |+++...++ -.+||||||||+||||||+++|.||||||.||+||
T Consensus 581 ANah~FI~~~p~gY~T~VGEk-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 581 ANAHEFITNFPDGYNTVVGEK-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALD 636 (716)
T ss_pred hChHHHHHhCccccccccCCc-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcc
Confidence 5677777777 887776666 56899999999999999999999999999999999
No 74
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.6e-34 Score=258.41 Aligned_cols=158 Identities=25% Similarity=0.395 Sum_probs=115.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc--eeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS--IDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~--g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|++ ++||+|.+|++++|+|||||||||||++|+| +..|++ |+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG--l~~p~~~~G~i~~~g~~~~~~~~~----- 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG--FVKAAGLTGRIAIADRDLTHAPPH----- 77 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCCEEEEECCEECCCCCHH-----
Confidence 3788999999975 8999999999999999999999999999998 678999 9999999987432110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
...+.+..+.. .+++.++ ..+++.... ............++.
T Consensus 78 ----~r~ig~vfQ~~------------------------~l~p~~t---------v~enl~~~l-~~~~~~~~~~~~~v~ 119 (362)
T TIGR03258 78 ----KRGLALLFQNY------------------------ALFPHLK---------VEDNVAFGL-RAQKMPKADIAERVA 119 (362)
T ss_pred ----HCCEEEEECCc------------------------ccCCCCc---------HHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 00011110000 0111111 122222111 111223334556789
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD 169 (362)
T TIGR03258 120 DALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169 (362)
T ss_pred HHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 999999997 46789999999999999999999999999999999999998
No 75
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-33 Score=237.78 Aligned_cols=160 Identities=26% Similarity=0.361 Sum_probs=106.9
Q ss_pred eeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 63 ENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 63 ~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
+|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++........... ...
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~~~---~~~ 76 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL--LEKFDSGQVYLNGKETPPLNSKKASKF---RRE 76 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCeEEEECCEEccccchhhHHHH---HHh
Confidence 566666654 7888999999999999999999999999998 678999999999988642211000000 000
Q ss_pred HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhC
Q psy2689 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL 217 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l 217 (262)
.+.+..+... +++..+ ..+++... .............++.++++.+
T Consensus 77 ~i~~~~q~~~------------------------~~~~~t---------~~e~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 122 (206)
T TIGR03608 77 KLGYLFQNFA------------------------LIENET---------VEENLDLG-LKYKKLSKKEKREKKKEALEKV 122 (206)
T ss_pred CeeEEecchh------------------------hccCCc---------HHHHHHHH-HHhcCCCHHHHHHHHHHHHHHc
Confidence 0111100000 000000 11111110 0011112223455788899999
Q ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 218 GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 218 gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 123 ~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD 166 (206)
T TIGR03608 123 GLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLD 166 (206)
T ss_pred Cch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCC
Confidence 996 45688899999999999999999999999999999999998
No 76
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=252.38 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=112.4
Q ss_pred eEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchh
Q psy2689 59 DIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDS 126 (262)
Q Consensus 59 ~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~ 126 (262)
.|+++|+++.|+. ||||+|.+||++||||+||||||||+++|+|. +.. |++|+|.|+|+++...+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl-l~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL-IDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCCCCcceEEEECCEECCcCCHH
Confidence 3677788777742 78899999999999999999999999999984 222 4799999999987544322
Q ss_pred HHHHHHhhhHHHHHHHH-HhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 127 AVNIVLSADKNRVKLLK-ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
.... +.. ....+ .+......+..+. ....+.+...........+
T Consensus 82 ~~~~----------~r~~~i~~v---~Q~~~~~l~p~~~----------------------v~~~i~~~l~~~~~~~~~~ 126 (326)
T PRK11022 82 ERRN----------LVGAEVAMI---FQDPMTSLNPCYT----------------------VGFQIMEAIKVHQGGNKKT 126 (326)
T ss_pred HHHH----------HhCCCEEEE---ecCchhhcCCcCC----------------------HHHHHHHHHHHhcCCCHHH
Confidence 1110 000 00111 0011000111110 0111111111111122334
Q ss_pred HHHHHHHHHHhCCCCh--hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~--~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+++.++|+.+|+.+ ...++++++|||||||||+|||||+.+|+||||||||++||
T Consensus 127 ~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD 185 (326)
T PRK11022 127 RRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185 (326)
T ss_pred HHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 5667899999999963 35678899999999999999999999999999999999998
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=246.86 Aligned_cols=161 Identities=27% Similarity=0.364 Sum_probs=113.1
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|+++.|+ + |+||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.......+.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~--- 78 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG--IYLPQRGRVKVMGREVNAENEKWVR--- 78 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCceEEEECCEECCCCCHHHHH---
Confidence 488999999985 3 8999999999999999999999999999998 6789999999999887432211110
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+.+..+.... .+ ...+ ..+++.... ............++.+
T Consensus 79 ----~~i~~v~q~~~~-~~--~~~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~~~~ 121 (274)
T PRK13647 79 ----SKVGLVFQDPDD-QV--FSST-----------------------------VWDDVAFGP-VNMGLDKDEVERRVEE 121 (274)
T ss_pred ----hhEEEEecChhh-hh--ccCc-----------------------------HHHHHHhhH-HHcCCCHHHHHHHHHH
Confidence 011111110000 00 0000 111111000 0111222233456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD 170 (274)
T PRK13647 122 ALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170 (274)
T ss_pred HHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 99999997 56788999999999999999999999999999999999998
No 78
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-33 Score=241.47 Aligned_cols=164 Identities=26% Similarity=0.318 Sum_probs=111.6
Q ss_pred eEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--l~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG--LDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc--CCCCCCeeEEECCEEcccCCHHHHH
Confidence 4778888888741 6899999999999999999999999999998 6789999999999887543221100
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.. ....+.+..+...+ ....+ ..+++.... .+..........+
T Consensus 84 ~~---~~~~i~~~~q~~~l----~~~~t-----------------------------v~~~l~~~~-~~~~~~~~~~~~~ 126 (228)
T PRK10584 84 KL---RAKHVGFVFQSFML----IPTLN-----------------------------ALENVELPA-LLRGESSRQSRNG 126 (228)
T ss_pred HH---HhheEEEEEccccc----CCCcC-----------------------------HHHHHHHHH-HhcCCCHHHHHHH
Confidence 00 00001010000000 00000 111111100 0111122234567
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 127 ~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD 178 (228)
T PRK10584 127 AKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178 (228)
T ss_pred HHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 88999999997 45678899999999999999999999999999999999998
No 79
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2e-33 Score=240.44 Aligned_cols=159 Identities=25% Similarity=0.350 Sum_probs=112.6
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+|.++|+++.|++ ++||+|.+||+++|+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~--- 80 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDISTLKPEIYR--- 80 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc--ccCCCCCeEEECCEEcCcCCHHHHH---
Confidence 35889999999975 8999999999999999999999999999998 6789999999999876533221100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+.+..+...+ . .. + ..+++.... .+.. ......++.+
T Consensus 81 ----~~i~~~~q~~~l---~-~~-t-----------------------------v~enl~~~~-~~~~--~~~~~~~~~~ 119 (225)
T PRK10247 81 ----QQVSYCAQTPTL---F-GD-T-----------------------------VYDNLIFPW-QIRN--QQPDPAIFLD 119 (225)
T ss_pred ----hccEEEeccccc---c-cc-c-----------------------------HHHHHHhHH-hhcC--CChHHHHHHH
Confidence 011111100000 0 00 0 111111100 0111 1112345778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||
T Consensus 120 ~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (225)
T PRK10247 120 DLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169 (225)
T ss_pred HHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999996445688899999999999999999999999999999999998
No 80
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2e-33 Score=243.64 Aligned_cols=161 Identities=27% Similarity=0.334 Sum_probs=110.3
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC-----ceeEEEeccccccCchhHHH
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-----SIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~-----~g~i~~~~~~i~~~~~~~~~ 129 (262)
|+++|++++|++ ++||+|.+||++||+||||||||||+++|+| +..|+ +|+|.++|+++........
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~p~~~~~~~G~i~~~g~~~~~~~~~~~- 78 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR--MNDLVPGVRIEGKVLFDGQDIYDKKIDVV- 78 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhc--cCCCCcCCCCceEEEECCEEccccccchH-
Confidence 678999999874 8999999999999999999999999999998 56676 9999999988743110000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc-CChhcHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS-IEADAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 208 (262)
.....+.+..+...+ . . .+ ..+++.... .... ........
T Consensus 79 ----~~~~~i~~v~q~~~~---~-~-~t-----------------------------v~e~l~~~~-~~~~~~~~~~~~~ 119 (247)
T TIGR00972 79 ----ELRRRVGMVFQKPNP---F-P-MS-----------------------------IYDNIAYGP-RLHGIKDKKELDE 119 (247)
T ss_pred ----HHHhheEEEecCccc---C-C-CC-----------------------------HHHHHHhHH-HhcCCCCHHHHHH
Confidence 000011111100000 0 0 00 111111100 1111 11223345
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 176 (247)
T TIGR00972 120 IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176 (247)
T ss_pred HHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6888999999962 34678899999999999999999999999999999999998
No 81
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.8e-33 Score=246.49 Aligned_cols=166 Identities=26% Similarity=0.378 Sum_probs=111.7
Q ss_pred EEEeeeeEeeC---------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch
Q psy2689 60 IKVENFSLSPC---------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD 125 (262)
Q Consensus 60 i~i~~v~~~~~---------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~ 125 (262)
|+++|+++.|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG--LEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEEccccCH
Confidence 67788888773 2 7899999999999999999999999999998 678999999999988753321
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
..... ..+.+.+..+.... ......+ ..+++..............
T Consensus 81 ~~~~~----~~~~i~~v~q~~~~--~~~~~~t-----------------------------v~~~l~~~~~~~~~~~~~~ 125 (265)
T TIGR02769 81 KQRRA----FRRDVQLVFQDSPS--AVNPRMT-----------------------------VRQIIGEPLRHLTSLDESE 125 (265)
T ss_pred HHHHH----HhhceEEEecChhh--hcCCCCC-----------------------------HHHHHHHHHHHhcCCCHHH
Confidence 11000 00001111100000 0000001 1111111111111122223
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 126 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 126 QKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 445688999999996456788899999999999999999999999999999999998
No 82
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.9e-34 Score=239.62 Aligned_cols=153 Identities=29% Similarity=0.449 Sum_probs=107.8
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~--~~~------ 70 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG--LIKPDSGEITFDGKSYQKN--IEA------ 70 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CcCCCceEEEECCCcccch--HHH------
Confidence 357888888864 8999999999999999999999999999998 5689999999999876321 000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+... +++..+ ..+++..... ... ....++.+++
T Consensus 71 -~~~i~~~~q~~~------------------------~~~~~t---------v~e~l~~~~~-~~~----~~~~~~~~~l 111 (208)
T cd03268 71 -LRRIGALIEAPG------------------------FYPNLT---------ARENLRLLAR-LLG----IRKKRIDEVL 111 (208)
T ss_pred -HhhEEEecCCCc------------------------cCccCc---------HHHHHHHHHH-hcC----CcHHHHHHHH
Confidence 000111100000 000000 1111111110 111 1245678889
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 112 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 112 DVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 999997 45678899999999999999999999999999999999998
No 83
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=242.33 Aligned_cols=162 Identities=27% Similarity=0.397 Sum_probs=109.2
Q ss_pred EEEeeeeEeeC------C---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC------L---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~------~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++..........
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING--LERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEEcccCCHHHHHH
Confidence 56677777763 1 6788999999999999999999999999998 67899999999999875432111000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
....+.+..+... +++..+ ..+++.... .............+
T Consensus 80 ----~~~~i~~~~q~~~------------------------~~~~~t---------~~e~l~~~~-~~~~~~~~~~~~~~ 121 (233)
T cd03258 80 ----ARRRIGMIFQHFN------------------------LLSSRT---------VFENVALPL-EIAGVPKAEIEERV 121 (233)
T ss_pred ----HHhheEEEccCcc------------------------cCCCCc---------HHHHHHHHH-HHcCCCHHHHHHHH
Confidence 0000111110000 000000 111111110 01111222234568
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 172 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCC
Confidence 8899999997 45678899999999999999999999999999999999998
No 84
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.8e-34 Score=258.68 Aligned_cols=158 Identities=27% Similarity=0.368 Sum_probs=115.6
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+|++++|+|||||||||||++|+| +..|++|+|.++|.++...+..
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG--l~~p~~G~I~~~g~~i~~~~~~------- 84 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG--FETPDSGRIMLDGQDITHVPAE------- 84 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECCCCCHH-------
Confidence 4889999999975 8999999999999999999999999999998 6789999999999987532211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..|.. .+++.++ ..+++.... ............++.++
T Consensus 85 --~r~ig~vfQ~~------------------------~lfp~lt---------v~eNi~~~l-~~~~~~~~~~~~~~~~~ 128 (375)
T PRK09452 85 --NRHVNTVFQSY------------------------ALFPHMT---------VFENVAFGL-RMQKTPAAEITPRVMEA 128 (375)
T ss_pred --HCCEEEEecCc------------------------ccCCCCC---------HHHHHHHHH-hhcCCCHHHHHHHHHHH
Confidence 00011110000 0111111 112222111 11122223345678899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 129 l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD 176 (375)
T PRK09452 129 LRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176 (375)
T ss_pred HHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 9999997 56789999999999999999999999999999999999998
No 85
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-33 Score=246.79 Aligned_cols=161 Identities=22% Similarity=0.340 Sum_probs=112.6
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++|+++.|++ |+||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.......+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~~~- 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG--LLEAESGQIIIDGDLLTEENVWDIR- 80 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEECCcCcHHHHH-
Confidence 4788899888841 8999999999999999999999999999998 6789999999999987432211110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
..+.+..+.... .....+ ..+++.... ............++
T Consensus 81 ------~~i~~v~q~~~~---~~~~~t-----------------------------v~eni~~~~-~~~~~~~~~~~~~~ 121 (279)
T PRK13650 81 ------HKIGMVFQNPDN---QFVGAT-----------------------------VEDDVAFGL-ENKGIPHEEMKERV 121 (279)
T ss_pred ------hhceEEEcChHH---hccccc-----------------------------HHHHHHhhH-HhCCCCHHHHHHHH
Confidence 111111110000 000001 111111000 01112222344568
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD 172 (279)
T PRK13650 122 NEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172 (279)
T ss_pred HHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 8899999997 46788899999999999999999999999999999999998
No 86
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=244.61 Aligned_cols=150 Identities=27% Similarity=0.429 Sum_probs=116.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHH-HHHHhhHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK-LLKECSKLEQ 150 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 150 (262)
|+||+|+.||++.|+|-||||||||++||.+ +..|+.|+|+++|.++...+...++...+ ..+. .|++.
T Consensus 46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr--Liept~G~ilv~g~di~~~~~~~Lr~~Rr---~~~sMVFQ~F----- 115 (386)
T COG4175 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNR--LIEPTRGEILVDGKDIAKLSAAELRELRR---KKISMVFQSF----- 115 (386)
T ss_pred cceeeecCCeEEEEEecCCCCHHHHHHHHhc--cCCCCCceEEECCcchhcCCHHHHHHHHh---hhhhhhhhhh-----
Confidence 7899999999999999999999999999998 78999999999999998877766543322 1111 12111
Q ss_pred hhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 151 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 151 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
.++++.+++++ .. +-.++......+.++++.++|+.+||.. ..+++|++
T Consensus 116 --------------------aLlPhrtVl~N---------v~-fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~yp~e 164 (386)
T COG4175 116 --------------------ALLPHRTVLEN---------VA-FGLEVQGVPKAEREERALEALELVGLEG-YADKYPNE 164 (386)
T ss_pred --------------------ccccchhHhhh---------hh-cceeecCCCHHHHHHHHHHHHHHcCchh-hhhcCccc
Confidence 12222222211 10 1123455666778889999999999984 67899999
Q ss_pred CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||||||.|||||+.+|+|||+|||+|+||
T Consensus 165 LSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 165 LSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred ccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 99999999999999999999999999999998
No 87
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=243.88 Aligned_cols=161 Identities=25% Similarity=0.383 Sum_probs=112.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~----- 75 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG--IVPRDAGNIIIDDEDISLLPLHAR----- 75 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCCCCHHHH-----
Confidence 4788999999875 8999999999999999999999999999998 678999999999988743221100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-cCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-SIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 212 (262)
....+.+..+...+ ....+ ..+++.... .+. .........++.+
T Consensus 76 -~~~~i~~~~q~~~~----~~~~t-----------------------------v~enl~~~~-~~~~~~~~~~~~~~~~~ 120 (241)
T PRK10895 76 -ARRGIGYLPQEASI----FRRLS-----------------------------VYDNLMAVL-QIRDDLSAEQREDRANE 120 (241)
T ss_pred -HHhCeEEeccCCcc----cccCc-----------------------------HHHHHhhhh-hcccccCHHHHHHHHHH
Confidence 00001111110000 00001 111111100 011 1111233456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 ~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (241)
T PRK10895 121 LMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169 (241)
T ss_pred HHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99999997 45678899999999999999999999999999999999998
No 88
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=245.63 Aligned_cols=168 Identities=28% Similarity=0.408 Sum_probs=122.4
Q ss_pred EEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC----CceeEEEeccccccCchh
Q psy2689 60 IKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP----SSIDLLYCEQEVEASDDS 126 (262)
Q Consensus 60 i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p----~~g~i~~~~~~i~~~~~~ 126 (262)
++++|++.+|.. ||||+|.+||++||||.|||||||+.+.|+|. ++.| .+|+|.|+|+++...+..
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l-lp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL-LPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc-cCCCCCeEeeeEEEECCcccccCCHH
Confidence 456777766631 78999999999999999999999999999994 4422 468999999998665433
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-Chhc
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADA 205 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 205 (262)
..+ .++. ..+..+++.++++.|+++....+ +.+....+... ...+
T Consensus 81 ~~~----------~iRG--~~I~mIfQ~p~~sLnPv~~Ig~Q----------------------i~E~l~~h~~~~~~~e 126 (316)
T COG0444 81 ELR----------KIRG--KEIAMIFQDPMTSLNPVMTIGDQ----------------------IAEVLRLHGKGLSKKE 126 (316)
T ss_pred HHH----------hhcC--ceEEEEEcCchhhcCChhhHHHH----------------------HHHHHHHhhcchhhHH
Confidence 111 1111 01112334556666777664332 22222222222 2345
Q ss_pred HHHHHHHHHHhCCCChh--hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKE--MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~--~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..++.++|+.+|+++. ..+.++++|||||||||.||.||+.+|+|||+||||++||
T Consensus 127 a~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALD 185 (316)
T COG0444 127 AKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185 (316)
T ss_pred HHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhh
Confidence 67789999999999854 6789999999999999999999999999999999999998
No 89
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.2e-33 Score=240.12 Aligned_cols=165 Identities=29% Similarity=0.423 Sum_probs=106.2
Q ss_pred EEEeeeeEeeC------C---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC------L---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~------~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|.++|++++|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~- 78 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG--LLKPTSGSIIFDGKDLLKLSRRLRK- 78 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEEccccchhhHH-
Confidence 56677777763 1 6889999999999999999999999999998 6789999999999887532210000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 209 (262)
.....+.+..+..... .....+ ..+++.... ...... .......
T Consensus 79 ---~~~~~i~~~~q~~~~~--~~~~~t-----------------------------v~~nl~~~~-~~~~~~~~~~~~~~ 123 (228)
T cd03257 79 ---IRRKEIQMVFQDPMSS--LNPRMT-----------------------------IGEQIAEPL-RIHGKLSKKEARKE 123 (228)
T ss_pred ---HhhccEEEEecCchhh--cCCcCC-----------------------------HHHHHHHHH-HhccCCcHHHHHHH
Confidence 0000011111100000 000001 111111100 001001 1111122
Q ss_pred -HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 -ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 -~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 124 AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred HHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 35788999996445678899999999999999999999999999999999998
No 90
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=245.03 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=111.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++.........
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~~~---- 74 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG--LLRPQKGAVLWQGKPLDYSKRGLLA---- 74 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC--CCCCCccEEEECCEEcccccCCHHH----
Confidence 3778999999975 8999999999999999999999999999998 6789999999999987421110000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
....+.+..+..... ....+ ..+++.... ............++.++
T Consensus 75 -~~~~i~~v~q~~~~~---~~~~~-----------------------------~~~~l~~~~-~~~~~~~~~~~~~~~~~ 120 (271)
T PRK13638 75 -LRQQVATVFQDPEQQ---IFYTD-----------------------------IDSDIAFSL-RNLGVPEAEITRRVDEA 120 (271)
T ss_pred -HHhheEEEeeChhhc---ccccc-----------------------------HHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 000111111100000 00000 001111000 01111122234467789
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 121 l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD 168 (271)
T PRK13638 121 LTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168 (271)
T ss_pred HHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9999996 45688899999999999999999999999999999999998
No 91
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.4e-33 Score=241.58 Aligned_cols=168 Identities=24% Similarity=0.314 Sum_probs=111.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-----cccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-----VEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-----i~~~~~~~~ 128 (262)
+|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|++ +...+....
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA--RLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCEEEECCccccccccccCCHHHH
Confidence 5889999999864 8999999999999999999999999999998 678999999999987 532221100
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
... .......+.+ .... . +....+ ..+++.................
T Consensus 84 ~~~---------~~~~i~~v~q---~~~~--~-----------~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~ 129 (258)
T PRK11701 84 RRL---------LRTEWGFVHQ---HPRD--G-----------LRMQVS---------AGGNIGERLMAVGARHYGDIRA 129 (258)
T ss_pred HHH---------hhcceEEEee---Cccc--c-----------cCcccc---------HHHHHHHHHHHhccCcHHHHHH
Confidence 000 0000000000 0000 0 000000 0111111000011011112345
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 130 ~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD 183 (258)
T PRK11701 130 TAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183 (258)
T ss_pred HHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 678899999996435678899999999999999999999999999999999998
No 92
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.9e-33 Score=240.98 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=110.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-----cccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-----VEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-----i~~~~~~~~ 128 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.+ +........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG--RLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEEecccccccccccCCHHHH
Confidence 4789999999964 8999999999999999999999999999998 678999999999876 432211100
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
.... .+.+.+..+ .... ++.. .....+++.................
T Consensus 81 ~~~~---~~~i~~~~q---------~~~~--~~~~--------------------~~~~~~~i~~~~~~~~~~~~~~~~~ 126 (253)
T TIGR02323 81 RRLM---RTEWGFVHQ---------NPRD--GLRM--------------------RVSAGANIGERLMAIGARHYGNIRA 126 (253)
T ss_pred HHhh---hcceEEEEe---------Cccc--ccCc--------------------cccHHHHHHHHHHHhcccchHHHHH
Confidence 0000 000000000 0000 0000 0000111111000010001112345
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 127 ~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD 180 (253)
T TIGR02323 127 AAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180 (253)
T ss_pred HHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 678899999996445678899999999999999999999999999999999998
No 93
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.7e-33 Score=245.55 Aligned_cols=163 Identities=23% Similarity=0.337 Sum_probs=110.4
Q ss_pred eEEEeeeeEeeC---------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCc
Q psy2689 59 DIKVENFSLSPC---------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 124 (262)
Q Consensus 59 ~i~i~~v~~~~~---------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~ 124 (262)
+|+++||+++|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhC--CCCCCCCEEEECCEECCCCc
Confidence 478888888884 1 7899999999999999999999999999998 67899999999998774221
Q ss_pred hhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-cCCh
Q psy2689 125 DSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-SIEA 203 (262)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 203 (262)
..... ..+.+..+..... .....+ ..+++.... ... ....
T Consensus 82 ~~~~~-------~~i~~v~q~~~~~--~~~~~t-----------------------------v~~~l~~~~-~~~~~~~~ 122 (267)
T PRK15112 82 YSYRS-------QRIRMIFQDPSTS--LNPRQR-----------------------------ISQILDFPL-RLNTDLEP 122 (267)
T ss_pred hhhHh-------ccEEEEecCchhh--cCcchh-----------------------------HHHHHHHHH-HhccCCCH
Confidence 11000 0010100000000 000000 000110000 011 1112
Q ss_pred hcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
......+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 181 (267)
T PRK15112 123 EQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181 (267)
T ss_pred HHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCC
Confidence 23345678899999996455678889999999999999999999999999999999998
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-33 Score=240.79 Aligned_cols=158 Identities=25% Similarity=0.348 Sum_probs=106.7
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~------ 72 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG--LLPPRSGSIRFDGRDITGLPPHER------ 72 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEEcCCCCHHHH------
Confidence 356788888764 8899999999999999999999999999998 678999999999987753321100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
....+.+..+...+ ....+ ..+++.... ... .......++.+++
T Consensus 73 ~~~~i~~~~q~~~~----~~~~t-----------------------------~~~~l~~~~-~~~--~~~~~~~~~~~~l 116 (222)
T cd03224 73 ARAGIGYVPEGRRI----FPELT-----------------------------VEENLLLGA-YAR--RRAKRKARLERVY 116 (222)
T ss_pred HhcCeEEecccccc----CCCCc-----------------------------HHHHHHHHh-hhc--CchhHHHHHHHHH
Confidence 00001111111000 00001 111111100 000 0112234566777
Q ss_pred HhC-CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGL-GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~l-gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+ ++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 117 ~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 164 (222)
T cd03224 117 ELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 164 (222)
T ss_pred HHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 777 465 45678899999999999999999999999999999999998
No 95
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.6e-33 Score=241.95 Aligned_cols=163 Identities=25% Similarity=0.303 Sum_probs=108.7
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCc-ccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~-~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+|. + ..|++|+|.++|+++...+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~~---- 75 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDERA---- 75 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCcceEEECCEecCCCCHHHhh----
Confidence 357888888864 89999999999999999999999999999983 2 368999999999877533211100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh------cCChhcHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK------SIEADAAE 207 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~ 207 (262)
...+.+..+...+ ....+. .+++........ ........
T Consensus 76 --~~~i~~v~q~~~~----~~~~t~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (243)
T TIGR01978 76 --RAGLFLAFQYPEE----IPGVSN-----------------------------LEFLRSALNARRSARGEEPLDLLDFL 120 (243)
T ss_pred --ccceEeeeccccc----cCCcCH-----------------------------HHHHHHHHHHhhcccccccccHHHHH
Confidence 0001111110000 000110 011110000000 00111234
Q ss_pred HHHHHHHHhCCCChhhhcCCCC-CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTK-EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~-~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+.....++++. +|||||||||+|||||+.+|++|||||||++||
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 176 (243)
T TIGR01978 121 KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176 (243)
T ss_pred HHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 5678899999997445677776 599999999999999999999999999999998
No 96
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-33 Score=246.22 Aligned_cols=165 Identities=27% Similarity=0.375 Sum_probs=112.1
Q ss_pred eEEEeeeeEeeC------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-hH
Q psy2689 59 DIKVENFSLSPC------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SA 127 (262)
Q Consensus 59 ~i~i~~v~~~~~------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~~ 127 (262)
.|.++|+++.|+ . ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++..... ..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA--LLKPSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEECccccccch
Confidence 477888888884 1 7899999999999999999999999999998 678999999999988742210 00
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
... ....+.+..+.... .+ ...+ ..+++... ............
T Consensus 80 ~~~----~~~~ig~v~q~~~~-~~--~~~t-----------------------------v~e~l~~~-~~~~~~~~~~~~ 122 (287)
T PRK13641 80 LKK----LRKKVSLVFQFPEA-QL--FENT-----------------------------VLKDVEFG-PKNFGFSEDEAK 122 (287)
T ss_pred HHH----HHhceEEEEeChhh-hh--ccch-----------------------------HHHHHHHH-HHHcCCCHHHHH
Confidence 000 00001000000000 00 0000 11111100 011112223345
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD 177 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 5788999999996446788999999999999999999999999999999999998
No 97
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=244.36 Aligned_cols=163 Identities=24% Similarity=0.344 Sum_probs=113.6
Q ss_pred ceeEEEeeeeEeeC--C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 57 SVDIKVENFSLSPC--L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 57 ~~~i~i~~v~~~~~--~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
..+|+++|+++.|+ + ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+...++
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG--LLKPQSGEIKIDGITISKENLKEIR 82 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEecCcCCHHHHh
Confidence 45689999999994 2 8999999999999999999999999999998 6789999999999887432211111
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
..+.+..+.... .....+ ..+++.... .............
T Consensus 83 -------~~i~~v~q~~~~---~~~~~t-----------------------------v~enl~~~~-~~~~~~~~~~~~~ 122 (271)
T PRK13632 83 -------KKIGIIFQNPDN---QFIGAT-----------------------------VEDDIAFGL-ENKKVPPKKMKDI 122 (271)
T ss_pred -------cceEEEEeCHHH---hcCccc-----------------------------HHHHHHhHH-HHcCCCHHHHHHH
Confidence 011111100000 000001 111111100 0111122223456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 123 ~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD 174 (271)
T PRK13632 123 IDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174 (271)
T ss_pred HHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 88899999997 46788899999999999999999999999999999999998
No 98
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-34 Score=242.65 Aligned_cols=161 Identities=29% Similarity=0.421 Sum_probs=115.9
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc-CchhHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA-SDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~-~~~~~~~~~ 131 (262)
++.+++++++|++ ++||+|.+|++++|+||||||||||+++++| +..|++|.|.++|.++.. ...
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G--Ll~p~~G~v~~~g~~~~~~~~~------ 74 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSEKSL------ 74 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcC--cCcCCCCEEEECCeeccchhhH------
Confidence 5788999999854 8999999999999999999999999999998 789999999999987642 111
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
..+......+.| +++.. ++ ..+ ..+.++.-... ......+.+.++.
T Consensus 75 -------~~~~~~vG~VfQ--npd~q----~~-----------~~t---------V~~evafg~~n-~g~~~~e~~~rv~ 120 (235)
T COG1122 75 -------LELRQKVGLVFQ--NPDDQ----LF-----------GPT---------VEDEVAFGLEN-LGLPREEIEERVA 120 (235)
T ss_pred -------HHhhcceEEEEE--Ccccc----cc-----------cCc---------HHHHHhhchhh-cCCCHHHHHHHHH
Confidence 111111111111 11100 00 000 01111111111 1233445778899
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+.. ..++++.+|||||||||+||.+|+.+|++|||||||++||
T Consensus 121 ~~l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD 170 (235)
T COG1122 121 EALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170 (235)
T ss_pred HHHHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCC
Confidence 9999999984 5899999999999999999999999999999999999998
No 99
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.9e-33 Score=237.13 Aligned_cols=151 Identities=28% Similarity=0.372 Sum_probs=103.4
Q ss_pred EeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 62 VENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 62 i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++.. ...
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~---~~~------- 69 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILLNGKPIKA---KER------- 69 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEEhhh---HHh-------
Confidence 3555555532 6788899999999999999999999999998 678999999999987631 000
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.+.+.+..+.... . +...+ ..+++..... . .. ....++.++++
T Consensus 70 ~~~i~~~~q~~~~-------------~----------~~~~t---------v~e~l~~~~~-~--~~--~~~~~~~~~l~ 112 (205)
T cd03226 70 RKSIGYVMQDVDY-------------Q----------LFTDS---------VREELLLGLK-E--LD--AGNEQAETVLK 112 (205)
T ss_pred hcceEEEecChhh-------------h----------hhhcc---------HHHHHhhhhh-h--cC--ccHHHHHHHHH
Confidence 0011111110000 0 00000 1111111000 0 01 12356888999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+.. ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 113 DLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 999974 5788899999999999999999999999999999999998
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.9e-33 Score=238.49 Aligned_cols=155 Identities=30% Similarity=0.419 Sum_probs=105.0
Q ss_pred EeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 62 VENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 62 i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++.. . .
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~-----~-------~ 67 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG--LLKPTSGSIRVFGKPLEK-----E-------R 67 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC--CCCCCCCEEEECCccHHH-----H-------H
Confidence 4566666653 7888999999999999999999999999998 678999999999876520 0 0
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc---CChhcHHHHHHHH
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS---IEADAAEPRARRI 213 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~ 213 (262)
..+.+..+...+.. ....+ ..+++......... ........++.++
T Consensus 68 ~~i~~v~q~~~~~~--~~~~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (213)
T cd03235 68 KRIGYVPQRRSIDR--DFPIS-----------------------------VRDVVLMGLYGHKGLFRRLSKADKAKVDEA 116 (213)
T ss_pred hheEEecccccccc--CCCCc-----------------------------HHHHHHhccccccccccCCCHHHHHHHHHH
Confidence 11111111000000 00001 01111100000000 0111234568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 117 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 164 (213)
T cd03235 117 LERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164 (213)
T ss_pred HHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9999997 46788899999999999999999999999999999999998
No 101
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=236.89 Aligned_cols=156 Identities=29% Similarity=0.427 Sum_probs=130.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.+.+++|+++|+. |+||.+++|+++|++|||||||||.++||.| +..|++|+|.++|+++..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILg--lle~~~G~I~~~g~~~~~----------- 68 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG--LLEPTEGEITWNGGPLSQ----------- 68 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhc--cCCccCceEEEcCcchhh-----------
Confidence 4789999999987 9999999999999999999999999999998 789999999999998753
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+++.++++++.++ +.+++.+ .+ .++..+..+...+...++..|
T Consensus 69 ~~~~rIGyLPEERGLy----~k~tv~d-----------------------------ql-~yla~LkGm~~~e~~~~~~~w 114 (300)
T COG4152 69 EIKNRIGYLPEERGLY----PKMTVED-----------------------------QL-KYLAELKGMPKAEIQKKLQAW 114 (300)
T ss_pred hhhhhcccChhhhccC----ccCcHHH-----------------------------HH-HHHHHhcCCcHHHHHHHHHHH
Confidence 2345677777666553 2222111 11 134567778888888999999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+++++.. ...+++.+||-|++|++.+..|++++|+++|||||+||||
T Consensus 115 Ler~~i~~-~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 115 LERLEIVG-KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred HHhccccc-cccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 99999985 4567799999999999999999999999999999999998
No 102
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=257.35 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=116.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|++++|+|||||||||||++|+| +..|++|+|.++|+++...+..
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG--l~~p~~G~I~i~g~~i~~~~~~------- 89 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG--FEQPTAGQIMLDGVDLSHVPPY------- 89 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECCCCCHH-------
Confidence 5899999999976 8999999999999999999999999999998 7899999999999887432210
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..|.. .+++.++ ..+++.... ............++.++
T Consensus 90 --~r~ig~vfQ~~------------------------~lfp~lt---------v~eNi~~~l-~~~~~~~~~~~~~v~~~ 133 (377)
T PRK11607 90 --QRPINMMFQSY------------------------ALFPHMT---------VEQNIAFGL-KQDKLPKAEIASRVNEM 133 (377)
T ss_pred --HCCEEEEeCCC------------------------ccCCCCC---------HHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 00011111000 0111111 112221111 11122233445678899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 134 l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD 181 (377)
T PRK11607 134 LGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181 (377)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999997 56789999999999999999999999999999999999998
No 103
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.3e-33 Score=235.54 Aligned_cols=154 Identities=28% Similarity=0.375 Sum_probs=107.9
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++..... ..
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~-~~------ 71 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG--LLRPDSGEVRWNGTALAEQRD-EP------ 71 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCccEEEECCEEcccchH-Hh------
Confidence 357788888864 8999999999999999999999999999998 678999999999987643210 00
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+... +++..+ ..+++.... .... . .+..+.+++
T Consensus 72 -~~~i~~~~q~~~------------------------~~~~~t---------v~~~l~~~~-~~~~---~-~~~~~~~~l 112 (198)
T TIGR01189 72 -HRNILYLGHLPG------------------------LKPELS---------ALENLHFWA-AIHG---G-AQRTIEDAL 112 (198)
T ss_pred -hhheEEeccCcc------------------------cccCCc---------HHHHHHHHH-HHcC---C-cHHHHHHHH
Confidence 000111100000 000000 111111111 1111 1 134578899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 113 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 113 AAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred HHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 999997 45678899999999999999999999999999999999998
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-33 Score=245.06 Aligned_cols=161 Identities=24% Similarity=0.323 Sum_probs=112.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|+++.|+. ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++..........
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G--~~~p~~G~i~~~g~~i~~~~~~~~~~- 81 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG--LLLPEAGTITVGGMVLSEETVWDVRR- 81 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCcEEEECCEECCcCcHHHHhh-
Confidence 4889999999852 8999999999999999999999999999998 67899999999999875332111110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.+.+..+... . .....+ ..+++.... ............++.
T Consensus 82 ------~i~~~~q~~~--~-~~~~~t-----------------------------v~enl~~~~-~~~~~~~~~~~~~~~ 122 (279)
T PRK13635 82 ------QVGMVFQNPD--N-QFVGAT-----------------------------VQDDVAFGL-ENIGVPREEMVERVD 122 (279)
T ss_pred ------heEEEEeCHH--H-hccccc-----------------------------HHHHHhhhH-hhCCCCHHHHHHHHH
Confidence 0111100000 0 000000 111111100 011112223345688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 123 ~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD 172 (279)
T PRK13635 123 QALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172 (279)
T ss_pred HHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 899999997 46788899999999999999999999999999999999998
No 105
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.1e-33 Score=236.34 Aligned_cols=152 Identities=27% Similarity=0.401 Sum_probs=107.8
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
++++|+++.|++ ++||+|.+|+++||+|+||||||||+++|+| +..|++|+|.++|.++..... ..
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~-~~------ 71 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG--LSPPLAGRVLLNGGPLDFQRD-SI------ 71 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEecccccH-Hh------
Confidence 357888888864 8999999999999999999999999999998 678999999999887632110 00
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
.+.+.+..+... +++..+ ..+++.. ... ...+.++.+++
T Consensus 72 -~~~i~~~~q~~~------------------------~~~~~t---------v~e~l~~----~~~---~~~~~~~~~~l 110 (201)
T cd03231 72 -ARGLLYLGHAPG------------------------IKTTLS---------VLENLRF----WHA---DHSDEQVEEAL 110 (201)
T ss_pred -hhheEEeccccc------------------------cCCCcC---------HHHHHHh----hcc---cccHHHHHHHH
Confidence 001111100000 000000 1111110 000 11345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 111 ~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 111 ARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred HHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999997 45678899999999999999999999999999999999998
No 106
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-33 Score=237.89 Aligned_cols=157 Identities=28% Similarity=0.368 Sum_probs=109.4
Q ss_pred EEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 60 IKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
|.++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...... .
T Consensus 1 i~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~g--l~~~~~G~i~~~g~~~~~~~~~---------~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAG--FETPQSGRVLINGVDVTAAPPA---------D 69 (211)
T ss_pred CEEEeEEEEeCCEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEEcCcCCHh---------H
Confidence 357888888865 8999999999999999999999999999998 6789999999999877432110 0
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
..+.+..+...+ ....+ ..+++..... .........+.++.++++.
T Consensus 70 ~~i~~~~q~~~~----~~~~t-----------------------------v~enl~~~~~-~~~~~~~~~~~~~~~~l~~ 115 (211)
T cd03298 70 RPVSMLFQENNL----FAHLT-----------------------------VEQNVGLGLS-PGLKLTAEDRQAIEVALAR 115 (211)
T ss_pred ccEEEEeccccc----CCCCc-----------------------------HHHHHhcccc-cccCccHHHHHHHHHHHHH
Confidence 001111100000 00001 0111110000 0000011234568889999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 116 ~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD 160 (211)
T cd03298 116 VGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160 (211)
T ss_pred cCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9997 45678899999999999999999999999999999999998
No 107
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-33 Score=244.73 Aligned_cols=165 Identities=24% Similarity=0.423 Sum_probs=112.5
Q ss_pred eEEEeeeeEeeC-------C---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchh-H
Q psy2689 59 DIKVENFSLSPC-------L---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-A 127 (262)
Q Consensus 59 ~i~i~~v~~~~~-------~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~-~ 127 (262)
.|+++|++++|. . ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++...... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G--l~~p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA--LLKPTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEECccccccch
Confidence 477888888884 1 7899999999999999999999999999998 6789999999999987432110 0
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
.. .....+.+..+.... .+ ...+ ..+++..... ..........
T Consensus 80 ~~----~~~~~ig~v~q~~~~-~l--~~~t-----------------------------v~e~i~~~~~-~~~~~~~~~~ 122 (286)
T PRK13646 80 IR----PVRKRIGMVFQFPES-QL--FEDT-----------------------------VEREIIFGPK-NFKMNLDEVK 122 (286)
T ss_pred HH----HHHhheEEEecChHh-cc--chhh-----------------------------HHHHHHhhHH-HcCCCHHHHH
Confidence 00 000111111110000 00 0000 0111110000 0112223345
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD 177 (286)
T PRK13646 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177 (286)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 5788999999996456778899999999999999999999999999999999998
No 108
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-33 Score=243.45 Aligned_cols=163 Identities=23% Similarity=0.369 Sum_probs=111.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~---- 75 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR--LLTPQSGTVFLGDKPISMLSSRQLA---- 75 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC--CcCCCCcEEEECCEEhHHCCHHHHh----
Confidence 5789999999975 8999999999999999999999999999998 6789999999999876432211100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+.+..+...+ ....+ ..|+.+.. ................++.+
T Consensus 76 ---~~i~~~~q~~~~----~~~~tv~~~i~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 121 (255)
T PRK11231 76 ---RRLALLPQHHLT----PEGITVRELVAYGR---------------------------SPWLSLWGRLSAEDNARVNQ 121 (255)
T ss_pred ---hheEEecccCCC----CCCccHHHHHHhcc---------------------------chhhhhccCCCHHHHHHHHH
Confidence 011111110000 00001 01110000 00000000011223456788
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||
T Consensus 122 ~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 170 (255)
T PRK11231 122 AMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 (255)
T ss_pred HHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 89999996 45788899999999999999999999999999999999998
No 109
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1e-32 Score=248.53 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=114.1
Q ss_pred eeEEEeeeeEeeC----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC---ceeEEEeccccccCch
Q psy2689 58 VDIKVENFSLSPC----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEASDD 125 (262)
Q Consensus 58 ~~i~i~~v~~~~~----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~---~g~i~~~~~~i~~~~~ 125 (262)
..|+++|+++.|. . ++||+|.+||++||+|+||||||||+++|+| +..|+ +|+|.|+|+++...+.
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G--l~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG--LLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc--CCCCCCCCCeEEEECCEECCcCCH
Confidence 3588999999883 1 8999999999999999999999999999998 55564 9999999998865432
Q ss_pred hHHHHHHhhhHHHHHHHH-HhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh
Q psy2689 126 SAVNIVLSADKNRVKLLK-ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (262)
..+.. +.. ....+ .+......|..+. ...++.............
T Consensus 89 ~~~~~----------~r~~~i~~v---~Q~~~~~l~p~~~----------------------v~~~i~~~~~~~~~~~~~ 133 (330)
T PRK09473 89 KELNK----------LRAEQISMI---FQDPMTSLNPYMR----------------------VGEQLMEVLMLHKGMSKA 133 (330)
T ss_pred HHHHH----------HhcCCEEEE---EcCchhhcCCCCC----------------------HHHHHHHHHHHhcCCCHH
Confidence 21110 000 00111 0111000111010 111111111111112233
Q ss_pred cHHHHHHHHHHhCCCCh--hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~--~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....++.++|+.+|+.. ...++++++|||||||||+|||||+.+|+|||+||||++||
T Consensus 134 ~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD 193 (330)
T PRK09473 134 EAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193 (330)
T ss_pred HHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 44567889999999974 23467899999999999999999999999999999999999
No 110
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.2e-33 Score=250.35 Aligned_cols=146 Identities=30% Similarity=0.496 Sum_probs=102.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.... ... ...+.+..+...+
T Consensus 11 ~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~-~~~-------~~~i~~~~q~~~~--- 77 (302)
T TIGR01188 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTT--LLRPTSGTARVAGYDVVREP-RKV-------RRSIGIVPQYASV--- 77 (302)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEcccCH-HHH-------HhhcEEecCCCCC---
Confidence 6677899999999999999999999999998 67899999999998874311 000 0111111111000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
....+ ..+++.. ...+..........++.++++.+|+. ...++++.+|
T Consensus 78 -~~~~t-----------------------------v~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 125 (302)
T TIGR01188 78 -DEDLT-----------------------------GRENLEM-MGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTY 125 (302)
T ss_pred -CCCCc-----------------------------HHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhC
Confidence 00001 1111111 11112222233455788999999997 4578889999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||||||||+|||||+.+|++|||||||+|||
T Consensus 126 SgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9999999999999999999999999999998
No 111
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-32 Score=244.70 Aligned_cols=164 Identities=27% Similarity=0.386 Sum_probs=111.0
Q ss_pred EEEeeeeEeeC------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-hHH
Q psy2689 60 IKVENFSLSPC------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SAV 128 (262)
Q Consensus 60 i~i~~v~~~~~------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~~~ 128 (262)
|+++|++++|+ . |+||+|.+||++||+||||||||||+++|+| +..|++|+|.++|+++..... ...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG--LLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCcEEEECCEECccccccchH
Confidence 67888888884 1 7899999999999999999999999999998 678999999999998742110 000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
.. ....+.+..+.... ++. ..+ ..+++.... ............
T Consensus 81 ~~----~~~~ig~v~q~~~~-~l~--~~t-----------------------------v~eni~~~~-~~~~~~~~~~~~ 123 (290)
T PRK13634 81 KP----LRKKVGIVFQFPEH-QLF--EET-----------------------------VEKDICFGP-MNFGVSEEDAKQ 123 (290)
T ss_pred HH----HHhhEEEEeeCchh-hhh--hhh-----------------------------HHHHHHHHH-HHcCCCHHHHHH
Confidence 00 00001111100000 000 000 011111000 001112223345
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD 177 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 688899999997456788899999999999999999999999999999999998
No 112
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=244.68 Aligned_cols=150 Identities=31% Similarity=0.395 Sum_probs=108.7
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
..|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.+++.++...
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~--------- 79 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG--LETPSAGELLAGTAPLAEA--------- 79 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCeEEEECCEEHHHh---------
Confidence 34889999999975 8999999999999999999999999999998 6789999999987654210
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..+... +++..+ ..+++... + . .....++.+
T Consensus 80 ---~~~i~~v~q~~~------------------------l~~~~t---------v~enl~~~---~---~-~~~~~~~~~ 116 (257)
T PRK11247 80 ---REDTRLMFQDAR------------------------LLPWKK---------VIDNVGLG---L---K-GQWRDAALQ 116 (257)
T ss_pred ---hCceEEEecCcc------------------------CCCCCc---------HHHHHHhc---c---c-chHHHHHHH
Confidence 000111000000 000000 11111100 0 0 012346788
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 117 ~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 117 ALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred HHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 99999997 45678899999999999999999999999999999999998
No 113
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-33 Score=245.46 Aligned_cols=164 Identities=27% Similarity=0.430 Sum_probs=111.7
Q ss_pred eEEEeeeeEeeCC----------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL----------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~----------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++||++.|+. ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG--LLKPTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEECCEECCCcCccHH
Confidence 3677888888741 7899999999999999999999999999998 678999999999988753211000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. ....+.+..+.... .....+ ..+++... .............
T Consensus 80 ~-----~~~~ig~v~q~~~~---~~~~~t-----------------------------v~e~l~~~-~~~~~~~~~~~~~ 121 (287)
T PRK13637 80 D-----IRKKVGLVFQYPEY---QLFEET-----------------------------IEKDIAFG-PINLGLSEEEIEN 121 (287)
T ss_pred H-----HhhceEEEecCchh---cccccc-----------------------------HHHHHHhH-HHHCCCCHHHHHH
Confidence 0 00011111110000 000000 11111110 0111122333455
Q ss_pred HHHHHHHhCCCC-hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFT-KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~-~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+. ....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD 176 (287)
T PRK13637 122 RVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176 (287)
T ss_pred HHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 788999999996 235788899999999999999999999999999999999998
No 114
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=260.61 Aligned_cols=167 Identities=32% Similarity=0.422 Sum_probs=121.9
Q ss_pred eeEEEeeeeEeeC---------C-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 58 VDIKVENFSLSPC---------L-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 58 ~~i~i~~v~~~~~---------~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
..++++|+++.|. . +|||+|.+||++||||+||||||||.|+|+| +..|++|.|.++|+++.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g--L~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG--LLPPSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEEeCcccc
Confidence 4578899988875 1 8999999999999999999999999999998 78899999999998832
Q ss_pred cCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC
Q psy2689 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201 (262)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (262)
...... ... ...++.+++.+....|+..+ ..+.+.+.+......
T Consensus 357 -~~~~~~----------~~~---r~~~QmvFQdp~~SLnPr~t----------------------V~~~i~epL~~~~~~ 400 (539)
T COG1123 357 -LTGGEL----------RRL---RRRIQMVFQDPYSSLNPRMT----------------------VGDILAEPLRIHGGG 400 (539)
T ss_pred -cccchh----------hhh---hhheEEEEeCcccccCcccc----------------------HHHHHHhHHhhhccc
Confidence 111110 111 11122122233333333222 222233333322222
Q ss_pred ChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 202 ~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
......+++.++++.+|+.....++++++||||||||++|||||+.+|++||+|||||+||
T Consensus 401 ~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 401 SGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred chHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 2344556799999999999878999999999999999999999999999999999999998
No 115
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.2e-33 Score=242.38 Aligned_cols=174 Identities=28% Similarity=0.351 Sum_probs=112.8
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++..............
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEEccccccccccccccc
Confidence 788999999875 8999999999999999999999999999998 678999999999987642100000000000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
..+...+......+.+ .. .+++..+ ..+++......+..........++.+++
T Consensus 84 ~~~~~~~~~~i~~v~q---~~---------------~l~~~~s---------v~enl~~~~~~~~~~~~~~~~~~~~~~l 136 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQ---HF---------------NLWSHMT---------VLENVMEAPIQVLGLSKQEARERAVKYL 136 (257)
T ss_pred chHHHHHhhceEEEec---Cc---------------ccCCCCc---------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 0000000011111100 00 0000000 1112211111111122233456788999
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+.....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 137 ~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (257)
T PRK10619 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184 (257)
T ss_pred HHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999997544478899999999999999999999999999999999998
No 116
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-33 Score=243.90 Aligned_cols=160 Identities=28% Similarity=0.350 Sum_probs=111.1
Q ss_pred EEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-hHHHHHH
Q psy2689 60 IKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~~~~~~~ 132 (262)
++++|+++.|+ + ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++..... ..+.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~--- 76 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG--LLRPQKGKVLVSGIDTGDFSKLQGIR--- 76 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEECCccccHHHHH---
Confidence 67889999884 2 8999999999999999999999999999998 678999999999987743221 1100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+.+..+.... .....+ ..+++... .............++.+
T Consensus 77 ----~~i~~v~q~~~~---~~~~~t-----------------------------v~enl~~~-~~~~~~~~~~~~~~~~~ 119 (274)
T PRK13644 77 ----KLVGIVFQNPET---QFVGRT-----------------------------VEEDLAFG-PENLCLPPIEIRKRVDR 119 (274)
T ss_pred ----hheEEEEEChhh---hcccch-----------------------------HHHHHHhh-HHHcCCCHHHHHHHHHH
Confidence 001110000000 000000 01111100 00111222233456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++..|||||||||+|||||+.+|+||||||||++||
T Consensus 120 ~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD 168 (274)
T PRK13644 120 ALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168 (274)
T ss_pred HHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99999997 45788899999999999999999999999999999999998
No 117
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.1e-33 Score=272.64 Aligned_cols=165 Identities=29% Similarity=0.400 Sum_probs=121.8
Q ss_pred CceeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 56 NSVDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 56 ~~~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
..-.|+++||+++|+. |+||+|++||++||||+||||||||+|+|+| ++.|++|+|.+||.++...+...+
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g--ly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG--LYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEeHHhcCHHHH
Confidence 3456999999999975 8999999999999999999999999999998 899999999999999988777666
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
+..+....|...++ .....+|+.+...... .+ ++... ...+
T Consensus 546 R~~ig~V~Q~~~Lf-----------~gSI~eNi~l~~p~~~------------------~e---~i~~A-------~~~a 586 (709)
T COG2274 546 RRQVGYVLQDPFLF-----------SGSIRENIALGNPEAT------------------DE---EIIEA-------AQLA 586 (709)
T ss_pred HhheeEEcccchhh-----------cCcHHHHHhcCCCCCC------------------HH---HHHHH-------HHHh
Confidence 55544444333222 2333344444321110 00 11111 1223
Q ss_pred HHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++.+..+ |+++...+. ...||||||||++|||||+++|+|||||||||+||
T Consensus 587 g~~~fI~~lP~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD 641 (709)
T COG2274 587 GAHEFIENLPMGYDTPVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALD 641 (709)
T ss_pred CcHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccC
Confidence 355555544 887766555 56799999999999999999999999999999999
No 118
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-33 Score=245.44 Aligned_cols=165 Identities=28% Similarity=0.354 Sum_probs=111.1
Q ss_pred EEEeeeeEeeC--------C--CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 60 IKVENFSLSPC--------L--KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 60 i~i~~v~~~~~--------~--~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
|+++|+++.|+ - ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.......
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~-- 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG--LLQPTEGKVTVGDIVVSSTSKQK-- 77 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc--CCCCCCcEEEECCEECccccccc--
Confidence 67778888774 1 7899999999999999999999999999998 67899999999999874211000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
....+......+.+ ++... ++. .+ ..+++...... ..........+
T Consensus 78 -------~~~~~~~~ig~v~q--~~~~~----l~~-----------~t---------v~~~l~~~~~~-~~~~~~~~~~~ 123 (288)
T PRK13643 78 -------EIKPVRKKVGVVFQ--FPESQ----LFE-----------ET---------VLKDVAFGPQN-FGIPKEKAEKI 123 (288)
T ss_pred -------cHHHHHhhEEEEec--Ccchh----ccc-----------ch---------HHHHHHhHHHH-cCCCHHHHHHH
Confidence 00000000111100 00000 000 00 11111111110 11222334567
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 124 ~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD 176 (288)
T PRK13643 124 AAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176 (288)
T ss_pred HHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCC
Confidence 88999999996456688999999999999999999999999999999999998
No 119
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-33 Score=236.73 Aligned_cols=153 Identities=26% Similarity=0.315 Sum_probs=109.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.. .. .
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~--~~-~----- 71 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG--LLPPAAGTIKLDGGDIDD--PD-V----- 71 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEeCcc--hh-h-----
Confidence 5889999999865 8999999999999999999999999999998 678999999999877531 00 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..+...+ ....+ ..+++... .... . .....+.++
T Consensus 72 --~~~~~~~~~~~~~----~~~~t-----------------------------v~~~l~~~-~~~~--~--~~~~~~~~~ 111 (207)
T PRK13539 72 --AEACHYLGHRNAM----KPALT-----------------------------VAENLEFW-AAFL--G--GEELDIAAA 111 (207)
T ss_pred --HhhcEEecCCCcC----CCCCc-----------------------------HHHHHHHH-HHhc--C--CcHHHHHHH
Confidence 0011111000000 00000 11111100 0111 1 112457889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+.. ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 112 l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 112 LEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred HHHcCCHH-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999974 5688899999999999999999999999999999999998
No 120
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.4e-33 Score=242.13 Aligned_cols=172 Identities=24% Similarity=0.347 Sum_probs=110.2
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+...... ...
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMT--LEPIDEGQIQVEGEQLYHMPGRNGPL-VPA 77 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEccccccccccc-ccc
Confidence 357888888864 8999999999999999999999999999998 67899999999998774321000000 000
Q ss_pred hHH-HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 135 DKN-RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 135 ~~~-~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
... ...+......+.+ .. .+++..+ ..+++..................+.++
T Consensus 78 ~~~~~~~~~~~i~~v~q---~~---------------~~~~~~t---------v~~nl~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQ---SF---------------NLFPHKT---------VLDNVTEAPVLVLGMARAEAEKRAMEL 130 (252)
T ss_pred chhHHHHHhhCeEEEec---Cc---------------ccCCCCc---------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000 0000000000000 00 0000000 111111100000111222334567889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||
T Consensus 131 l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 131 LDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred HHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9999997 45778899999999999999999999999999999999998
No 121
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-33 Score=224.23 Aligned_cols=164 Identities=30% Similarity=0.409 Sum_probs=117.4
Q ss_pred eEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
.|+++++++..+. +++|.|.+||.+||||||||||||||-+++| +..|++|+|.+.|+++...+.....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAG--Ld~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG--LDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhc--CCCCCCceEEEcCcchhhcCHHHHH
Confidence 3566666665542 7888999999999999999999999999998 7899999999999998776544321
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.... ..+.+.. +..-++++++.+++ +..+ ..+..-........
T Consensus 84 ~~R~---~~vGfVF------------------------QSF~Lip~ltAlEN---------V~lP-leL~ge~~~~~~~~ 126 (228)
T COG4181 84 ALRA---RHVGFVF------------------------QSFHLIPNLTALEN---------VALP-LELRGESSADSRAG 126 (228)
T ss_pred Hhhc---cceeEEE------------------------Eeeeccccchhhhh---------ccch-hhhcCCccccHHHH
Confidence 1100 0011110 01112233332222 2211 22332223445667
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++|+.+|+.. ....+|.+|||||+|||+||||++..|+|||.||||.+||
T Consensus 127 A~~lL~~vGLg~-Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD 178 (228)
T COG4181 127 AKALLEAVGLGK-RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178 (228)
T ss_pred HHHHHHHhCccc-ccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcc
Confidence 999999999985 5677899999999999999999999999999999999998
No 122
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=243.31 Aligned_cols=165 Identities=26% Similarity=0.378 Sum_probs=110.0
Q ss_pred eEEEeeeeEeeC----------CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchh-H
Q psy2689 59 DIKVENFSLSPC----------LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-A 127 (262)
Q Consensus 59 ~i~i~~v~~~~~----------~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~-~ 127 (262)
.|+++|++++|+ .++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--l~~p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG--LHVPTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEccccccccC
Confidence 367788888774 17899999999999999999999999999998 6789999999999887432100 0
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
... ....+.+..+.... .+. .. + ..+++.... ...........
T Consensus 80 ~~~----~~~~i~~~~q~~~~-~~~-~~-t-----------------------------v~e~l~~~~-~~~~~~~~~~~ 122 (280)
T PRK13649 80 IKQ----IRKKVGLVFQFPES-QLF-EE-T-----------------------------VLKDVAFGP-QNFGVSQEEAE 122 (280)
T ss_pred HHH----HHhheEEEeeChhh-hhc-cc-c-----------------------------HHHHHHHHH-HHcCCCHHHHH
Confidence 000 00001111110000 000 00 0 111111000 01111122234
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 177 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 5678889999997445688899999999999999999999999999999999998
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-33 Score=242.78 Aligned_cols=160 Identities=26% Similarity=0.331 Sum_probs=110.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++.........
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~p~~G~i~~~g~~~~~~~~~~~~---- 75 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG--ELSPDSGEVRLNGRPLADWSPAELA---- 75 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCEEEECCEEcccCCHHHhh----
Confidence 4788999999875 8999999999999999999999999999998 6789999999999876432211000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+..+...+ ....+ ..+++..... ............+.++
T Consensus 76 ---~~i~~~~q~~~~----~~~~t-----------------------------v~e~l~~~~~-~~~~~~~~~~~~~~~~ 118 (258)
T PRK13548 76 ---RRRAVLPQHSSL----SFPFT-----------------------------VEEVVAMGRA-PHGLSRAEDDALVAAA 118 (258)
T ss_pred ---hheEEEccCCcC----CCCCC-----------------------------HHHHHHhhhc-ccCCCcHHHHHHHHHH
Confidence 001111110000 00001 1111110000 0001112234567889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHc------cCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~------~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++.+.+|||||||||+|||||+ .+|++|||||||++||
T Consensus 119 l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD 172 (258)
T PRK13548 119 LAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172 (258)
T ss_pred HHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCC
Confidence 9999997 4578889999999999999999999 5999999999999998
No 124
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-33 Score=240.29 Aligned_cols=161 Identities=25% Similarity=0.338 Sum_probs=110.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+|. .. |.+|+|.++|.++...+....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL--IELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4788999999875 89999999999999999999999999999994 33 479999999988743221111
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC--ChhcH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EADAA 206 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 206 (262)
. ..+.+..+...+ ....+ ..+++.... ..... .....
T Consensus 81 ~-------~~i~~v~q~~~~----~~~~t-----------------------------v~enl~~~~-~~~~~~~~~~~~ 119 (250)
T PRK14247 81 R-------RRVQMVFQIPNP----IPNLS-----------------------------IFENVALGL-KLNRLVKSKKEL 119 (250)
T ss_pred h-------ccEEEEeccCcc----CCCCc-----------------------------HHHHHHHHH-HhccccCCHHHH
Confidence 0 001111100000 00001 111111100 01111 11233
Q ss_pred HHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD 178 (250)
T PRK14247 120 QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLD 178 (250)
T ss_pred HHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 456788999999853 34678899999999999999999999999999999999998
No 125
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.7e-33 Score=233.53 Aligned_cols=153 Identities=21% Similarity=0.261 Sum_probs=108.7
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|.++|++++|++ ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|+++... ...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--~~~~~~G~v~~~g~~~~~~-~~~------- 71 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG--LLNPEKGEILFERQSIKKD-LCT------- 71 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCeeEEECCCccccC-HHH-------
Confidence 678999999875 8999999999999999999999999999998 6789999999999876421 000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
..+.+.+..+...+ ....+ ..+++... .. .. ..+..+.+++
T Consensus 72 ~~~~i~~~~q~~~~----~~~~t-----------------------------v~~~~~~~---~~-~~--~~~~~~~~~l 112 (200)
T PRK13540 72 YQKQLCFVGHRSGI----NPYLT-----------------------------LRENCLYD---IH-FS--PGAVGITELC 112 (200)
T ss_pred HHhheEEecccccc----CcCCC-----------------------------HHHHHHHH---Hh-cC--cchHHHHHHH
Confidence 00111111100000 00011 11111100 00 01 1134678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+++. ...++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 113 ~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD 159 (200)
T PRK13540 113 RLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159 (200)
T ss_pred HHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 999987 45678889999999999999999999999999999999998
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=242.56 Aligned_cols=161 Identities=25% Similarity=0.375 Sum_probs=111.8
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
++.++|++++|+ . ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~--- 77 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG--ILKPTSGSVLIRGEPITKENIREVR--- 77 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEECCcCCHHHHH---
Confidence 377899999984 2 8999999999999999999999999999998 6789999999999887432211110
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+.+..+.... .....+ ..+++... .............++.+
T Consensus 78 ----~~i~~v~q~~~~---~~~~~t-----------------------------v~~~l~~~-~~~~~~~~~~~~~~~~~ 120 (277)
T PRK13652 78 ----KFVGLVFQNPDD---QIFSPT-----------------------------VEQDIAFG-PINLGLDEETVAHRVSS 120 (277)
T ss_pred ----hheEEEecCccc---cccccc-----------------------------HHHHHHhH-HHHcCCCHHHHHHHHHH
Confidence 001110000000 000000 01111100 00111222233456788
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||
T Consensus 121 ~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD 169 (277)
T PRK13652 121 ALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169 (277)
T ss_pred HHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99999997 46788899999999999999999999999999999999998
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-33 Score=244.46 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=112.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~---- 84 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR--HQPPSEGEILLDAQPLESWSSKAFA---- 84 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC--CCCCCCCEEEECCEehhhCCHHHHh----
Confidence 5899999999975 8999999999999999999999999999998 6789999999999876432211100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH-h--cCChhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-K--SIEADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~--~~~~~~~~~~~ 210 (262)
..+.+..+...+ ....+ ..+++....... . .........++
T Consensus 85 ---~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~~~~~~ 128 (265)
T PRK10575 85 ---RKVAYLPQQLPA----AEGMT-----------------------------VRELVAIGRYPWHGALGRFGAADREKV 128 (265)
T ss_pred ---hheEEeccCCCC----CCCcc-----------------------------HHHHHHhCcccccccccCCCHHHHHHH
Confidence 011111110000 00001 011111000000 0 00011234567
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+++. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 129 ~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 179 (265)
T PRK10575 129 EEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179 (265)
T ss_pred HHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 8899999996 46788899999999999999999999999999999999998
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=241.41 Aligned_cols=161 Identities=22% Similarity=0.317 Sum_probs=111.4
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+...+.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~G--l~~~~~G~i~~~g~~~~~~~~~~~~-- 82 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG--IEKVKSGEIFYNNQAITDDNFEKLR-- 82 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEECCcCCHHHHH--
Confidence 4888999998852 8899999999999999999999999999998 6789999999999887432211111
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+.+.+..+.... . ....+ ..+++.... ............++.
T Consensus 83 -----~~i~~v~q~~~~--~-~~~~~-----------------------------v~~~~~~~~-~~~~~~~~~~~~~~~ 124 (269)
T PRK13648 83 -----KHIGIVFQNPDN--Q-FVGSI-----------------------------VKYDVAFGL-ENHAVPYDEMHRRVS 124 (269)
T ss_pred -----hheeEEEeChHH--h-ccccc-----------------------------HHHHHHhhH-HhcCCCHHHHHHHHH
Confidence 011111100000 0 00000 000110000 001111222345678
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 125 ~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD 174 (269)
T PRK13648 125 EALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174 (269)
T ss_pred HHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 899999997 45778899999999999999999999999999999999998
No 129
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-33 Score=224.10 Aligned_cols=145 Identities=29% Similarity=0.471 Sum_probs=112.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||++.+||+++|+||||||||||+|+++. +..|++|.++|.|+++...+....+.. +.+..|...+.
T Consensus 21 ~isl~v~~Ge~iaitGPSG~GKStllk~va~--Lisp~~G~l~f~Ge~vs~~~pea~Rq~-------VsY~~Q~paLf-- 89 (223)
T COG4619 21 NISLSVRAGEFIAITGPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDVSTLKPEAYRQQ-------VSYCAQTPALF-- 89 (223)
T ss_pred ceeeeecCCceEEEeCCCCccHHHHHHHHHh--ccCCCCceEEEcCccccccChHHHHHH-------HHHHHcCcccc--
Confidence 6788899999999999999999999999996 789999999999999988877655433 33332222211
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
++....|+++. +. ++ ....+...+..+|++++++....++++.+|
T Consensus 90 --g~tVeDNlifP------------------------------~~-~r--~rr~dr~aa~~llar~~l~~~~L~k~it~l 134 (223)
T COG4619 90 --GDTVEDNLIFP------------------------------WQ-IR--NRRPDRAAALDLLARFALPDSILTKNITEL 134 (223)
T ss_pred --ccchhhccccc------------------------------hH-Hh--ccCCChHHHHHHHHHcCCchhhhcchhhhc
Confidence 22222333321 11 11 111245568889999999988999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||||++|+|-|..-|+||+|||||++||
T Consensus 135 SGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 135 SGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred cchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 9999999999999999999999999999998
No 130
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-33 Score=238.72 Aligned_cols=157 Identities=27% Similarity=0.388 Sum_probs=111.2
Q ss_pred EEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 60 IKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|+++...... .
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~--~------- 70 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAG--FLTPASGSLTLNGQDHTTTPPS--R------- 70 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCeecCcCChh--h-------
Confidence 678999999975 8999999999999999999999999999998 6789999999999876432110 0
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
..+.+..+... +++..+ ..+++..... ...........++.++++.
T Consensus 71 ~~i~~~~q~~~------------------------~~~~~t---------v~e~l~~~~~-~~~~~~~~~~~~~~~~l~~ 116 (232)
T PRK10771 71 RPVSMLFQENN------------------------LFSHLT---------VAQNIGLGLN-PGLKLNAAQREKLHAIARQ 116 (232)
T ss_pred ccEEEEecccc------------------------cccCCc---------HHHHHhcccc-cccCCCHHHHHHHHHHHHH
Confidence 00111000000 000000 0111110000 0000011234568889999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 117 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD 161 (232)
T PRK10771 117 MGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161 (232)
T ss_pred cCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9997 46788999999999999999999999999999999999998
No 131
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-33 Score=231.95 Aligned_cols=160 Identities=26% Similarity=0.344 Sum_probs=111.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++++|++..|+. ++||++.+||+++|+||||+||||||++|+| +..+.+|+|.++|+|+...+....-
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~G--l~~~~~G~I~~~G~dit~~p~~~r~---- 76 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHERA---- 76 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeeEEECCeecCCCCHHHHH----
Confidence 5889999999997 9999999999999999999999999999998 6788899999999999876543211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
+..+.+.+|-+ .+++.+|+. +|+.--..... .........+++
T Consensus 77 --r~Gi~~VPegR------------------------~iF~~LTVe---------ENL~~g~~~~~--~~~~~~~~~e~v 119 (237)
T COG0410 77 --RLGIAYVPEGR------------------------RIFPRLTVE---------ENLLLGAYARR--DKEAQERDLEEV 119 (237)
T ss_pred --hCCeEeCcccc------------------------cchhhCcHH---------HHHhhhhhccc--ccccccccHHHH
Confidence 01111111111 122222211 11110000000 001111125566
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
.+.|=--.+..+++..+|||||||.++|||||+.+|++|+|||||.||
T Consensus 120 ~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL 167 (237)
T COG0410 120 YELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167 (237)
T ss_pred HHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc
Confidence 666643346678889999999999999999999999999999999997
No 132
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.1e-33 Score=239.31 Aligned_cols=168 Identities=20% Similarity=0.307 Sum_probs=112.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~~~~~~~~---- 75 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG--KTRPDEGSVLFGGTDLTGLPEHQIA---- 75 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCCeEEECCeecCCCCHHHHH----
Confidence 3778999998865 8999999999999999999999999999998 5689999999999876433211000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..+...+ ....+ ..|+.+..... ..++..+..........++.+
T Consensus 76 --~~~i~~~~q~~~~----~~~~tv~~nl~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 126 (242)
T TIGR03411 76 --RAGIGRKFQKPTV----FENLTVFENLELALPRD-----------------------KSVFASLFFRLSAEEKDRIEE 126 (242)
T ss_pred --hcCeeEecccccc----CCCCCHHHHHHHhhhcc-----------------------cccccccccccHHHHHHHHHH
Confidence 0001111110000 00111 11111100000 000000000011223456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD 175 (242)
T TIGR03411 127 VLETIGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175 (242)
T ss_pred HHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 99999997 45678899999999999999999999999999999999998
No 133
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=246.67 Aligned_cols=175 Identities=21% Similarity=0.249 Sum_probs=112.3
Q ss_pred eEEEeeeeEeeCC----------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCc--hh
Q psy2689 59 DIKVENFSLSPCL----------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--DS 126 (262)
Q Consensus 59 ~i~i~~v~~~~~~----------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~--~~ 126 (262)
.|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...- ..
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~G--l~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG--LIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCeEEECCEEccccccccc
Confidence 5889999998841 8999999999999999999999999999998 67899999999998764210 00
Q ss_pred HHHHH-HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 127 AVNIV-LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
..... .........+......+.+ .+... ++. .+ ..+++..... ........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q--~~~~~----l~~-----------~t---------v~eni~~~~~-~~~~~~~~ 151 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQ--FPEYQ----LFK-----------DT---------IEKDIMFGPV-ALGVKKSE 151 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEE--Cchhc----ccc-----------ch---------HHHHHHhhHH-hcCCCHHH
Confidence 00000 0000000001111111100 00000 000 00 1111110000 01112223
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 152 ~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD 208 (320)
T PRK13631 152 AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208 (320)
T ss_pred HHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 445788899999996445788899999999999999999999999999999999998
No 134
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-32 Score=245.05 Aligned_cols=175 Identities=25% Similarity=0.354 Sum_probs=112.0
Q ss_pred eEEEeeeeEeeCC----------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-hH
Q psy2689 59 DIKVENFSLSPCL----------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SA 127 (262)
Q Consensus 59 ~i~i~~v~~~~~~----------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~~ 127 (262)
.|+++|++++|++ ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++..... ..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G--l~~p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNA--LLLPDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCcEEEEeceeccccccccc
Confidence 3778888888841 7899999999999999999999999999998 678999999998876521100 00
Q ss_pred HH----H-HHhh-----hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHH
Q psy2689 128 VN----I-VLSA-----DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE 197 (262)
Q Consensus 128 ~~----~-~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (262)
+. . .+.. ......+......+.+ ++... ++ .. ...+++.... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q--~~~~~--------------l~-~~---------tv~e~i~~~~-~ 132 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ--FAEYQ--------------LF-EQ---------TIEKDIIFGP-V 132 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEee--Ccccc--------------cc-cc---------cHHHHHHhhH-H
Confidence 00 0 0000 0000000000111100 00000 00 00 0111121110 0
Q ss_pred HhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 198 LKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 198 l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...........++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD 197 (305)
T PRK13651 133 SMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLD 197 (305)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 11222334456789999999996456789999999999999999999999999999999999998
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=238.67 Aligned_cols=165 Identities=22% Similarity=0.289 Sum_probs=109.6
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCc-cc--CCceeEEEeccccccCchhHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AI--PSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~-~~--p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
..|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+|..- .. |++|+|.++|+++...+.....
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 35889999999864 8999999999999999999999999999998421 12 5799999999887421110000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 208 (262)
....+.+..+...+ . .. + ..+++.... ..... .......
T Consensus 85 -----~~~~i~~v~q~~~~---~-~~-t-----------------------------v~enl~~~~-~~~~~~~~~~~~~ 124 (253)
T PRK14242 85 -----LRRRVGMVFQKPNP---F-PK-S-----------------------------IFENVAYGL-RVNGVKDKAYLAE 124 (253)
T ss_pred -----HhhcEEEEecCCCC---C-cC-c-----------------------------HHHHHHHHH-HHcCCCCHHHHHH
Confidence 00001111100000 0 00 0 111111110 01111 1122345
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD 181 (253)
T PRK14242 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181 (253)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6778899998842 24577899999999999999999999999999999999998
No 136
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-33 Score=245.39 Aligned_cols=162 Identities=28% Similarity=0.394 Sum_probs=110.2
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
.++++++.|+. ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+...+....
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G--l~~p~~G~i~i~g~~~~~~~~~~~~~~~--- 100 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR--LIEPTSGKVLIDGQDIAAMSRKELRELR--- 100 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCeEEEECCEEccccChhhhhhhh---
Confidence 45688888875 8999999999999999999999999999998 6789999999999877433211100000
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
...+.+..+... +++..+ ..+++.... .+..........++.++++
T Consensus 101 ~~~i~~v~q~~~------------------------~~~~~t---------v~e~l~~~~-~~~~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 101 RKKISMVFQSFA------------------------LLPHRT---------VLENVAFGL-EVQGVPRAEREERAAEALE 146 (269)
T ss_pred cCcEEEEecCcc------------------------cCCCCc---------HHHHHHHHH-HhcCCCHHHHHHHHHHHHH
Confidence 000111100000 000000 111111110 1111122233456888999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD 192 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99997 45788899999999999999999999999999999999998
No 137
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-32 Score=263.78 Aligned_cols=174 Identities=30% Similarity=0.490 Sum_probs=112.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~~ 132 (262)
+|.++|++++|++ ++||+|.+|+++|||||||||||||||+|+| +..|++|+|.+.+.. +........
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G--~~~pd~G~I~~~~~~~i~~~~q~~~---- 74 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN--EISADGGSYTFPGNWQLAWVNQETP---- 74 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEecCCCEEEEEecCCC----
Confidence 3789999999986 8999999999999999999999999999998 678999999987753 111000000
Q ss_pred hhhHHHHHHHHHh-hHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKEC-SKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
......+.+..+. ..+..+. .+....... .....+......+.....+....++.
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~---------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLE---------------------AQLHDANER---NDGHAIATIHGKLDAIDAWTIRSRAA 130 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHH---------------------HHHHHHhcc---CCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 0000011111100 0000000 000000000 00000111111111122234456789
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+.+||.....++++.+|||||||||+|||||+.+|+||||||||||||
T Consensus 131 ~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD 181 (638)
T PRK10636 131 SLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181 (638)
T ss_pred HHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCC
Confidence 999999997445788999999999999999999999999999999999998
No 138
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-33 Score=240.96 Aligned_cols=173 Identities=20% Similarity=0.319 Sum_probs=113.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
++.++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~---- 78 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG--FYKPTGGTILLRGQHIEGLPGHQIA---- 78 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhC--CcCCCcceEEECCEECCCCCHHHHH----
Confidence 5889999999975 8999999999999999999999999999998 6789999999999887543211100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC--ChhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 210 (262)
...+.+..+...+ ....+ ..|+.+...... .. . .....+. .... ........+
T Consensus 79 --~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~--------------~~-~--~~~~~~~-~~~~~~~~~~~~~~~ 134 (255)
T PRK11300 79 --RMGVVRTFQHVRL----FREMTVIENLLVAQHQQL--------------KT-G--LFSGLLK-TPAFRRAESEALDRA 134 (255)
T ss_pred --hcCeEEeccCccc----CCCCcHHHHHHHhhhccc--------------cc-h--hhhhhcc-ccccccchhHHHHHH
Confidence 0001101111000 01111 122221100000 00 0 0000000 0000 001223467
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 135 ~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 185 (255)
T PRK11300 135 ATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185 (255)
T ss_pred HHHHHhCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 7889999996 46788899999999999999999999999999999999998
No 139
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-33 Score=227.33 Aligned_cols=154 Identities=35% Similarity=0.427 Sum_probs=118.0
Q ss_pred EEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 60 IKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+.+++++.+|.+ ++|++|.+||.++++||||||||||||+++| +..|..|+|.+++..|...+..
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG--f~~P~~G~i~l~~r~i~gPgae------ 75 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG--FVTPSRGSIQLNGRRIEGPGAE------ 75 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhc--CcCcccceEEECCEeccCCCcc------
Confidence 566778888865 8899999999999999999999999999998 8899999999999988643221
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
+-..+++...+ ++.+ ..+|+. +-..+..+........+.+
T Consensus 76 -----rgvVFQ~~~Ll-------------------------PWl~---------~~dNva-fgL~l~Gi~k~~R~~~a~q 115 (259)
T COG4525 76 -----RGVVFQNEALL-------------------------PWLN---------VIDNVA-FGLQLRGIEKAQRREIAHQ 115 (259)
T ss_pred -----ceeEeccCccc-------------------------hhhH---------HHHHHH-HHHHhcCCCHHHHHHHHHH
Confidence 11111111111 1211 112221 1123455666667778999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..+|+.+ ..++++.+|||||||||.|||||+.+|++|+||||+++||
T Consensus 116 ~l~~VgL~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 116 MLALVGLEG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred HHHHhCccc-ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHH
Confidence 999999974 4688899999999999999999999999999999999998
No 140
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=240.28 Aligned_cols=165 Identities=22% Similarity=0.324 Sum_probs=109.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.++++|++++|++ ++||+|.+|+++||+||||||||||+++|+|...+. |++|+|.++|+++.........
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~- 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA- 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH-
Confidence 4789999999975 899999999999999999999999999999942111 3699999999876321100000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc-CChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS-IEADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 209 (262)
....+.+..+...+ ....+ ..+++..... ... .........
T Consensus 83 ----~~~~i~~~~q~~~~----~~~~t-----------------------------v~~nl~~~~~-~~~~~~~~~~~~~ 124 (258)
T PRK14241 83 ----VRRTIGMVFQRPNP----FPTMS-----------------------------IRDNVVAGLK-LNGVRNKKDLDEL 124 (258)
T ss_pred ----HhcceEEEcccccc----CCCCc-----------------------------HHHHHHHHHH-hcCCCCHHHHHHH
Confidence 00001111100000 00001 1111111110 111 112233456
Q ss_pred HHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (258)
T PRK14241 125 VEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 (258)
T ss_pred HHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 78889999884 234678899999999999999999999999999999999998
No 141
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=242.96 Aligned_cols=162 Identities=27% Similarity=0.412 Sum_probs=112.5
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
..|.++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~~--- 80 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR--LMTPAHGHVWLDGEHIQHYASKEVA--- 80 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcC--CCCCCCcEEEECCEEhhhCCHHHHh---
Confidence 35889999999975 8999999999999999999999999999998 6789999999999876432211110
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHH-HHH--HhcCChhcHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV-YDE--LKSIEADAAEPR 209 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--l~~~~~~~~~~~ 209 (262)
..+.+..+...+ ....+. .+++... ... +..........+
T Consensus 81 ----~~i~~v~q~~~~----~~~~tv-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T PRK10253 81 ----RRIGLLAQNATT----PGDITV-----------------------------QELVARGRYPHQPLFTRWRKEDEEA 123 (265)
T ss_pred ----hheEEeeccCcC----CCCCcH-----------------------------HHHHHhCcccccccccCCCHHHHHH
Confidence 011111110000 000010 0011000 000 000001123446
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 124 ~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 124 VTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred HHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 78899999996 46788999999999999999999999999999999999998
No 142
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-33 Score=254.45 Aligned_cols=163 Identities=26% Similarity=0.384 Sum_probs=111.6
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
++++++.+.|+. ++||+|.+||+++|+||||||||||+++|+| +..|++|+|.++|+++...+........
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G--l~~p~sG~I~i~G~~i~~~~~~~l~~~~-- 104 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR--LIEPTRGQVLIDGVDIAKISDAELREVR-- 104 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHc--CCCCCCCEEEECCEECCcCCHHHHHHHH--
Confidence 556666666654 8999999999999999999999999999998 6789999999999987543321110000
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+.. .+++..+ ..+++.... .+..........++.+++
T Consensus 105 -~~~igyv~Q~~------------------------~l~~~~T---------v~enl~~~~-~~~~~~~~~~~~~~~e~L 149 (400)
T PRK10070 105 -RKKIAMVFQSF------------------------ALMPHMT---------VLDNTAFGM-ELAGINAEERREKALDAL 149 (400)
T ss_pred -hCCEEEEECCC------------------------cCCCCCC---------HHHHHHHHH-HhcCCCHHHHHHHHHHHH
Confidence 00000000000 0000001 111221111 111222233456788999
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 150 ~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 150 RQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred HHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 999997 45788899999999999999999999999999999999998
No 143
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-32 Score=245.73 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=110.9
Q ss_pred eEEEeeeeEeeC----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc---cCCceeEEEeccccccCchh
Q psy2689 59 DIKVENFSLSPC----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEASDDS 126 (262)
Q Consensus 59 ~i~i~~v~~~~~----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~---~p~~g~i~~~~~~i~~~~~~ 126 (262)
.|+++|++++|. . ++||+|.+||++||+|+||||||||+++|+|. +. .|++|+|.|+|+++......
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl-~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV-TKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc-CCCCCCCcceEEEECCEECCcCCHH
Confidence 478888888882 2 89999999999999999999999999999984 22 26899999999987543322
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH--hc---C
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL--KS---I 201 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~---~ 201 (262)
......+ ..+ ..+. +......+..+. ..+.+....... .. .
T Consensus 82 ~~~~~~~---~~i------~~v~---Q~~~~~l~p~~t----------------------v~~~l~~~~~~~~~~~~~~~ 127 (330)
T PRK15093 82 ERRKLVG---HNV------SMIF---QEPQSCLDPSER----------------------VGRQLMQNIPGWTYKGRWWQ 127 (330)
T ss_pred HHHHHhC---CCE------EEEe---cCcchhcCcccc----------------------HHHHHHHHHHhhhccccccc
Confidence 1110000 000 1010 010000010000 001111100000 00 0
Q ss_pred ChhcHHHHHHHHHHhCCCCh--hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 202 EADAAEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 202 ~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.......++.++|+.+||.. ...++++++|||||||||+|||||+.+|++|||||||++||
T Consensus 128 ~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 190 (330)
T PRK15093 128 RFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAME 190 (330)
T ss_pred cHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCC
Confidence 11223467889999999974 34578899999999999999999999999999999999998
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-32 Score=241.64 Aligned_cols=161 Identities=22% Similarity=0.313 Sum_probs=111.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc---eeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS---IDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~---g~i~~~~~~i~~~~~~~~ 128 (262)
+|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++ |+|.++|+++........
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G--~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLING--LLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc--ccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 5889999999842 8999999999999999999999999999998 567776 899999988743221110
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. ..+.+..+.... .....+ ..+++.... ............
T Consensus 83 ~-------~~ig~v~q~~~~---~~~~~t-----------------------------v~enl~~~~-~~~~~~~~~~~~ 122 (282)
T PRK13640 83 R-------EKVGIVFQNPDN---QFVGAT-----------------------------VGDDVAFGL-ENRAVPRPEMIK 122 (282)
T ss_pred H-------hheEEEEECHHH---hhccCC-----------------------------HHHHHHhhH-HhCCCCHHHHHH
Confidence 0 011111000000 000001 111111000 011112223445
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 123 ~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD 175 (282)
T PRK13640 123 IVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 (282)
T ss_pred HHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 688899999997 46788899999999999999999999999999999999998
No 145
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.9e-33 Score=234.80 Aligned_cols=156 Identities=24% Similarity=0.312 Sum_probs=108.5
Q ss_pred EEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 61 KVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 61 ~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
+++|+++.|.. ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++..... .. .
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~--~~-------~ 70 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAG--FIEPASGSIKVNDQSHTGLAP--YQ-------R 70 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEEcccCCh--hc-------c
Confidence 56788888864 8999999999999999999999999999998 678999999999987642110 00 0
Q ss_pred HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhC
Q psy2689 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL 217 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l 217 (262)
.+.+..+...+ ....+ ..+++..... .........+.++.++++.+
T Consensus 71 ~i~~v~q~~~~----~~~~t-----------------------------~~en~~~~~~-~~~~~~~~~~~~~~~~l~~~ 116 (213)
T TIGR01277 71 PVSMLFQENNL----FAHLT-----------------------------VRQNIGLGLH-PGLKLNAEQQEKVVDAAQQV 116 (213)
T ss_pred ceEEEeccCcc----CCCCc-----------------------------HHHHHHhHhh-ccCCccHHHHHHHHHHHHHc
Confidence 01111100000 00001 1111111000 00001112345678899999
Q ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 218 GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 218 gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 117 ~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 117 GIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred CcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 996 45788899999999999999999999999999999999998
No 146
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.6e-33 Score=253.70 Aligned_cols=151 Identities=25% Similarity=0.373 Sum_probs=105.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
|+||+|.+||+++|+||||||||||+++|+| +..|++|+|.++|+++...+...+.... ...+.+..|.
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~G--l~~p~~G~I~i~G~~i~~~~~~~~~~~r---r~~i~~v~Q~------ 79 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNR--LIEPTAGQIFIDGENIMKQSPVELREVR---RKKIGMVFQQ------ 79 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhC--CCCCCceEEEECCEECCcCCHHHHHHHH---hCcEEEEECC------
Confidence 5677899999999999999999999999998 6889999999999988654322110000 0000000000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
..++++.+ ..+++.... .+..........++.++++.+|+. ...++++.+|
T Consensus 80 ------------------~~l~~~~T---------V~eNi~~~~-~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~L 130 (363)
T TIGR01186 80 ------------------FALFPHMT---------ILQNTSLGP-ELLGWPEQERKEKALELLKLVGLE-EYEHRYPDEL 130 (363)
T ss_pred ------------------CcCCCCCC---------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhC
Confidence 00111111 112221111 112223334556789999999997 4678999999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||||||||+|||||+.+|++|||||||++||
T Consensus 131 SGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 131 SGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999999999999999999999999999998
No 147
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-32 Score=241.43 Aligned_cols=163 Identities=25% Similarity=0.338 Sum_probs=112.8
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+|+++|++++|+ + ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++.........
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~G--l~~p~~G~i~i~g~~~~~~~~~~~~--- 79 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKPSSGRILFDGKPIDYSRKGLMK--- 79 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCccEEEECCEECCCCcchHHH---
Confidence 488999999995 3 8999999999999999999999999999998 6789999999999887421110000
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....+.+..+.... .....+ ..+++..... ...........++.+
T Consensus 80 --~~~~ig~v~q~~~~---~~~~~t-----------------------------v~e~l~~~~~-~~~~~~~~~~~~~~~ 124 (283)
T PRK13636 80 --LRESVGMVFQDPDN---QLFSAS-----------------------------VYQDVSFGAV-NLKLPEDEVRKRVDN 124 (283)
T ss_pred --HHhhEEEEecCcch---hhcccc-----------------------------HHHHHHhHHH-HcCCCHHHHHHHHHH
Confidence 00001111100000 000000 1111111000 011222233456888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 125 ~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD 173 (283)
T PRK13636 125 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173 (283)
T ss_pred HHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 99999997 56789999999999999999999999999999999999998
No 148
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.2e-33 Score=236.89 Aligned_cols=158 Identities=23% Similarity=0.294 Sum_probs=106.1
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++||++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|.++...+....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~------ 72 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG--LLPVKSGSIRLDGEDITKLPPHER------ 72 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCEEEECCEECCCCCHHHH------
Confidence 357888888864 8999999999999999999999999999998 678999999999988754321100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
....+.+..+...+ ....+ ..+++..... ... ......+.+++
T Consensus 73 ~~~~i~~~~q~~~~----~~~~t-----------------------------v~~~l~~~~~-~~~---~~~~~~~~~~l 115 (230)
T TIGR03410 73 ARAGIAYVPQGREI----FPRLT-----------------------------VEENLLTGLA-ALP---RRSRKIPDEIY 115 (230)
T ss_pred HHhCeEEeccCCcc----cCCCc-----------------------------HHHHHHHHHH-hcC---cchHHHHHHHH
Confidence 00011111111000 00001 1111111100 000 11123356667
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++......++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 116 ~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD 163 (230)
T TIGR03410 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ 163 (230)
T ss_pred HHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 777632245678899999999999999999999999999999999998
No 149
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-32 Score=234.14 Aligned_cols=164 Identities=29% Similarity=0.438 Sum_probs=106.4
Q ss_pred EEEeeeeEeeC--------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec--c--ccccC
Q psy2689 60 IKVENFSLSPC--------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE--Q--EVEAS 123 (262)
Q Consensus 60 i~i~~v~~~~~--------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~--~--~i~~~ 123 (262)
|+++|+++.|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.+++ . ++...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA--NYLPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCeEEEecCCCccchhhc
Confidence 56777777773 1 7888999999999999999999999999998 6789999999984 2 33211
Q ss_pred chhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh
Q psy2689 124 DDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203 (262)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (262)
+....... ....+.+..+... +++..+ ..+++..... ......
T Consensus 80 ~~~~~~~~---~~~~i~~~~q~~~------------------------~~~~~t---------v~e~l~~~~~-~~~~~~ 122 (224)
T TIGR02324 80 SPREVLEV---RRKTIGYVSQFLR------------------------VIPRVS---------ALEVVAEPLL-ERGVPR 122 (224)
T ss_pred CHHHHHHH---HhcceEEEecccc------------------------cCCCcc---------HHHHHHHHHH-HcCCCH
Confidence 11100000 0000000000000 000000 1111111000 011112
Q ss_pred hcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.....++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 123 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 123 EAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred HHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 23345678899999997545578899999999999999999999999999999999998
No 150
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=255.21 Aligned_cols=169 Identities=25% Similarity=0.376 Sum_probs=124.4
Q ss_pred eEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchh
Q psy2689 59 DIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDS 126 (262)
Q Consensus 59 ~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~ 126 (262)
.++++|+++.|.. ||||+|.+||++||||.|||||||+.++|+|. ++.+ .+|+|.|+|+++...+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gl-l~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL-LPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhcc-CCCCCcccceEEEECCcchhcCCHH
Confidence 5788888888742 89999999999999999999999999999994 3333 389999999988665543
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcH
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAA 206 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (262)
..+...+ ..+..+++.+++..|+.+....+ +.+..........+++
T Consensus 84 ~~r~~rg------------~~Ia~i~Q~p~~slnP~~tIg~Q----------------------i~E~~~~h~~~~~~ea 129 (539)
T COG1123 84 EMRKLRG------------KRIAMIFQDPMTSLNPVMTIGDQ----------------------IREALRLHGKGSRAEA 129 (539)
T ss_pred HHHHhcc------------ccEEEEecCchhhcCchhhHHHH----------------------HHHHHHHhccccHHHH
Confidence 3211111 01112234555666665543222 2222222222335667
Q ss_pred HHHHHHHHHhCCCChhhh-cCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQ-EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~-~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++.++|+.+|+++... ++++++|||||||||.||+||+++|++||+||||++||
T Consensus 130 ~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLD 186 (539)
T COG1123 130 RKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186 (539)
T ss_pred HHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 889999999999985544 46999999999999999999999999999999999998
No 151
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=237.35 Aligned_cols=163 Identities=21% Similarity=0.275 Sum_probs=108.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~i~~~~~~~~ 128 (262)
+|+++|++++|++ ++||+|.+||+++|+||||||||||+++|+| +..| ++|+|.++|+++.......
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~~~~~~G~i~~~g~~i~~~~~~~- 83 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR--MNDLVEGIKIEGNVIYEGKNIYSNNFDI- 83 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc--cccCCcCCCCceEEEECCEecccccccH-
Confidence 5889999999975 8999999999999999999999999999998 4444 5899999998764211000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. .....+.+..+...+ . . .+ ..+++.................
T Consensus 84 ~----~~~~~i~~v~q~~~~---~-~-~t-----------------------------v~eni~~~~~~~~~~~~~~~~~ 125 (254)
T PRK14273 84 L----ELRRKIGMVFQTPNP---F-L-MS-----------------------------IYDNISYGPKIHGTKDKKKLDE 125 (254)
T ss_pred H----HHhhceEEEeecccc---c-c-Cc-----------------------------HHHHHHHHHHhcCCCCHHHHHH
Confidence 0 000001111100000 0 0 01 1111111100000011122345
Q ss_pred HHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 126 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 182 (254)
T PRK14273 126 IVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182 (254)
T ss_pred HHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence 677888888873 234678899999999999999999999999999999999998
No 152
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.9e-32 Score=237.74 Aligned_cols=167 Identities=26% Similarity=0.351 Sum_probs=111.5
Q ss_pred eEEEeeeeEeeC---------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCc
Q psy2689 59 DIKVENFSLSPC---------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 124 (262)
Q Consensus 59 ~i~i~~v~~~~~---------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~ 124 (262)
+|.++||++.|+ + |+||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG--LESPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEeccccC
Confidence 367788888875 2 7899999999999999999999999999998 67899999999998764332
Q ss_pred hhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh
Q psy2689 125 DSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204 (262)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (262)
.... ..+......+.+ .... . +.+..+ ..+++......+......
T Consensus 81 ~~~~----------~~~~~~i~~v~q---~~~~----~---------~~~~~t---------~~~~l~~~~~~~~~~~~~ 125 (268)
T PRK10419 81 RAQR----------KAFRRDIQMVFQ---DSIS----A---------VNPRKT---------VREIIREPLRHLLSLDKA 125 (268)
T ss_pred hhHH----------HHHHhcEEEEEc---Chhh----c---------cCCCCC---------HHHHHHHHHHhhccCCHH
Confidence 1110 000000010000 0000 0 000000 111111111111111222
Q ss_pred cHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 126 ~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 126 ERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred HHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 3345688999999996456788899999999999999999999999999999999998
No 153
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-32 Score=239.77 Aligned_cols=162 Identities=33% Similarity=0.409 Sum_probs=111.1
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+||+++|+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~~----- 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG--ALRPDAGTVDLAGVDLHGLSRRARA----- 74 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC--CCCCCCCEEEECCEEcccCCHHHHh-----
Confidence 567888888875 8999999999999999999999999999998 6789999999999887543211100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+..+...+ ....+ ..|+.+.. ................++.++
T Consensus 75 --~~i~~~~q~~~~----~~~~tv~e~l~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 121 (256)
T TIGR03873 75 --RRVALVEQDSDT----AVPLTVRDVVALGR---------------------------IPHRSLWAGDSPHDAAVVDRA 121 (256)
T ss_pred --hheEEecccCcc----CCCCCHHHHHHhcc---------------------------hhhhhhccCCCHHHHHHHHHH
Confidence 011111110000 00011 11111100 000000001111233568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 169 (256)
T TIGR03873 122 LARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD 169 (256)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 9999996 56788899999999999999999999999999999999998
No 154
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-33 Score=251.57 Aligned_cols=156 Identities=24% Similarity=0.382 Sum_probs=108.6
Q ss_pred EEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 60 IKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
|++ |++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++........ .....
T Consensus 2 l~~-~l~k~~~~~~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaG--l~~p~~G~I~~~g~~~~~~~~~~~---~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISG--LTRPQKGRIVLNGRVLFDAEKGIC---LPPEK 75 (352)
T ss_pred eEE-EEEEEeCCEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEccccccccc---cchhh
Confidence 556 88888876 8999999999999999999999999999998 678999999999987642110000 00000
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
..+.+..+.. .+++..+ ..+++... +. .....++.++++.
T Consensus 76 ~~i~~v~q~~------------------------~l~~~~t---------v~enl~~~---~~----~~~~~~~~~~l~~ 115 (352)
T PRK11144 76 RRIGYVFQDA------------------------RLFPHYK---------VRGNLRYG---MA----KSMVAQFDKIVAL 115 (352)
T ss_pred CCEEEEcCCc------------------------ccCCCCc---------HHHHHHhh---hh----hhhHHHHHHHHHH
Confidence 0010100000 0011111 11112110 00 1224568889999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 116 ~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD 160 (352)
T PRK11144 116 LGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred cCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 9997 46788899999999999999999999999999999999998
No 155
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1e-32 Score=263.29 Aligned_cols=161 Identities=28% Similarity=0.407 Sum_probs=110.3
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++||+++|++ |+||+|++|++++|+||||||||||+++|+| ++.|++|+|.++|+++... ...++..+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~i~g~~i~~~-~~~lr~~i 410 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG--LLDPLQGEVTLDGVSVSSL-QDELRRRI 410 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEEhhhH-HHHHHhhe
Confidence 4899999999963 8999999999999999999999999999998 7899999999999998654 43333222
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|...++ +.+..+|+.+..... ..+.+ .+.++ ...+.+
T Consensus 411 ~~V~Q~~~lF-----------~~TI~eNI~~g~~~~------------------~~e~i---~~al~-------~a~l~~ 451 (529)
T TIGR02868 411 SVFAQDAHLF-----------DTTVRDNLRLGRPDA------------------TDEEL---WAALE-------RVGLAD 451 (529)
T ss_pred EEEccCcccc-----------cccHHHHHhccCCCC------------------CHHHH---HHHHH-------HcCCHH
Confidence 2222221111 223334444421100 00000 01111 112333
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..+ |+++...++ ...||||||||++|||||+++|++||||||||+||
T Consensus 452 ~i~~lp~GldT~ige~-G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD 502 (529)
T TIGR02868 452 WLRSLPDGLDTVLGEG-GARLSGGERQRLALARALLADAPILLLDEPTEHLD 502 (529)
T ss_pred HHHhCcccccchhccc-cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 34433 565544444 45799999999999999999999999999999999
No 156
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=235.42 Aligned_cols=111 Identities=36% Similarity=0.576 Sum_probs=99.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
+|||+|.+||++||||.||||||||-|+|.| +..|++|+|+|.|+++....
T Consensus 31 ~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~--------------------------- 81 (268)
T COG4608 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLS--------------------------- 81 (268)
T ss_pred ceeEEEcCCCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcc---------------------------
Confidence 6888999999999999999999999999998 78999999999998863211
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
.....+++.++|+.+|+..+..+|++++|
T Consensus 82 ---------------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhel 110 (268)
T COG4608 82 ---------------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHEL 110 (268)
T ss_pred ---------------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCccc
Confidence 01233467889999999988899999999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||||++|||||+.+|+++++|||||+||
T Consensus 111 SGGQrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 111 SGGQRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred CchhhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 9999999999999999999999999999998
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=236.40 Aligned_cols=162 Identities=26% Similarity=0.327 Sum_probs=110.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCc-ccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~-~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|..- +.|++|+|.++|+++...+....+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~--- 78 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR--- 78 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh---
Confidence 5788999999975 8999999999999999999999999999998411 147899999999987533211100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC--ChhcHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EADAAEPRA 210 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 210 (262)
..+.+..+...+ . .. + ..+++... ..+... .......++
T Consensus 79 ----~~i~~~~q~~~l---~-~~-t-----------------------------v~eni~~~-~~~~~~~~~~~~~~~~~ 119 (246)
T PRK14269 79 ----KNVGMVFQQPNV---F-VK-S-----------------------------IYENISYA-PKLHGMIKNKDEEEALV 119 (246)
T ss_pred ----hhEEEEecCCcc---c-cc-c-----------------------------HHHHhhhH-HhhcCcccChHHHHHHH
Confidence 011111110000 0 00 0 11111100 001111 112234567
Q ss_pred HHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 120 VDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 78999999952 34567889999999999999999999999999999999998
No 158
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=237.38 Aligned_cols=161 Identities=24% Similarity=0.333 Sum_probs=108.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEecccccc--Cchh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQEVEA--SDDS 126 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~i~~--~~~~ 126 (262)
.|+++|++++|++ ++||+|.+||++||+||||||||||+++|+| +..| .+|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR--LLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCcccCCCCceEEEECCEEccccccChH
Confidence 5889999999975 8999999999999999999999999999998 4444 59999999988742 1110
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC--Chh
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EAD 204 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 204 (262)
.. ...+.+..+...+ ....+ ..+++.... ..... ...
T Consensus 82 ~~-------~~~i~~~~q~~~~----~~~~t-----------------------------v~enl~~~~-~~~~~~~~~~ 120 (253)
T PRK14267 82 EV-------RREVGMVFQYPNP----FPHLT-----------------------------IYDNVAIGV-KLNGLVKSKK 120 (253)
T ss_pred HH-------hhceeEEecCCcc----CCCCc-----------------------------HHHHHHHHH-HhcCccCCHH
Confidence 00 0011111110000 00001 111111100 01111 112
Q ss_pred cHHHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....++.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 181 (253)
T PRK14267 121 ELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181 (253)
T ss_pred HHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 23345778888888742 34577899999999999999999999999999999999998
No 159
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2e-32 Score=228.30 Aligned_cols=150 Identities=29% Similarity=0.362 Sum_probs=100.0
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++....... .. ....+.+..+....
T Consensus 10 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~-~~----~~~~i~~~~q~~~~--- 79 (190)
T TIGR01166 10 GLNFAAERGEVLALLGANGAGKSTLLLHLNG--LLRPQSGAVLIDGEPLDYSRKGL-LE----RRQRVGLVFQDPDD--- 79 (190)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceeEEECCEEccccccch-HH----HHhhEEEEecChhh---
Confidence 5677899999999999999999999999998 67899999999998874211100 00 00001111110000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
.....+ ..+++.... ............++.++++.+|+. ...++++.+|
T Consensus 80 ~~~~~t-----------------------------v~~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 128 (190)
T TIGR01166 80 QLFAAD-----------------------------VDQDVAFGP-LNLGLSEAEVERRVREALTAVGAS-GLRERPTHCL 128 (190)
T ss_pred cccccc-----------------------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhC
Confidence 000000 111111000 011112223345678899999997 4578889999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||||++|||||+.+|++|||||||++||
T Consensus 129 S~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999999999999999999999999999998
No 160
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-32 Score=232.55 Aligned_cols=155 Identities=26% Similarity=0.288 Sum_probs=110.8
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+|.++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++.... .
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~i~~~~---~---- 80 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG--LLHVESGQIQIDGKTATRGD---R---- 80 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC--CCCCCCeeEEECCEEccchh---h----
Confidence 35889999999865 8999999999999999999999999999998 67899999999998764210 0
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..+...+ ....+ ..+++... ..+. ....+..+.+
T Consensus 81 ---~~~i~~~~q~~~~----~~~~t-----------------------------~~e~l~~~-~~~~---~~~~~~~~~~ 120 (214)
T PRK13543 81 ---SRFMAYLGHLPGL----KADLS-----------------------------TLENLHFL-CGLH---GRRAKQMPGS 120 (214)
T ss_pred ---hhceEEeecCccc----ccCCc-----------------------------HHHHHHHH-HHhc---CCcHHHHHHH
Confidence 0001111100000 00000 11111100 0111 1123445778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+++.. ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 121 ~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (214)
T PRK13543 121 ALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169 (214)
T ss_pred HHHHcCChh-hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 899999974 5688899999999999999999999999999999999998
No 161
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=238.10 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=108.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc---cCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~---~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|..-+ .|++|+|.++|+++........
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~-- 90 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA-- 90 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH--
Confidence 4888999999875 89999999999999999999999999999984211 1579999999987642110000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
...+.+.+..+...+ .. .+ ..+++.................++
T Consensus 91 ---~~~~~i~~~~q~~~~----~~-~t-----------------------------v~~nl~~~~~~~~~~~~~~~~~~~ 133 (260)
T PRK10744 91 ---LLRAKVGMVFQKPTP----FP-MS-----------------------------IYDNIAFGVRLFEKLSRAEMDERV 133 (260)
T ss_pred ---HHhcceEEEecCCcc----Cc-Cc-----------------------------HHHHHhhhHhhcCCCCHHHHHHHH
Confidence 000011111100000 00 00 111111100000011222234567
Q ss_pred HHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 134 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 188 (260)
T PRK10744 134 EWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188 (260)
T ss_pred HHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCC
Confidence 88899998742 34577889999999999999999999999999999999998
No 162
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-32 Score=238.95 Aligned_cols=162 Identities=23% Similarity=0.366 Sum_probs=110.7
Q ss_pred EEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|+++|++++|+ . ++||+|.+||++||+||||||||||+++|+| +..|.+|+|.++|.++.........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G--l~~~~~G~i~~~g~~~~~~~~~~~~---- 75 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG--ILKPTSGEVLIKGEPIKYDKKSLLE---- 75 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCccEEEECCEECccccchHHH----
Confidence 67889999885 2 8999999999999999999999999999998 6789999999999887421110000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
....+.+..+.... .+ ...+ ..+++..... ...........++.++
T Consensus 76 -~~~~i~~v~q~~~~-~~--~~~t-----------------------------v~e~i~~~~~-~~~~~~~~~~~~~~~~ 121 (275)
T PRK13639 76 -VRKTVGIVFQNPDD-QL--FAPT-----------------------------VEEDVAFGPL-NLGLSKEEVEKRVKEA 121 (275)
T ss_pred -HHhheEEEeeChhh-hh--cccc-----------------------------HHHHHHHHHH-HcCCCHHHHHHHHHHH
Confidence 00011111110000 00 0000 1111110000 0011122334568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 169 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9999997 46788999999999999999999999999999999999998
No 163
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.1e-32 Score=237.55 Aligned_cols=159 Identities=24% Similarity=0.309 Sum_probs=107.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|.++|+++.|+. ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|+++...+....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~~~~~~~----- 77 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--DPRATSGRIVFDGKDITDWQTAKI----- 77 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC--CCCCCCceEEECCEecCCCCHHHH-----
Confidence 5889999999864 8999999999999999999999999999998 678999999999988754321100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
....+.+..+...+ ....+ ..+++.... .. .........+.++
T Consensus 78 -~~~~i~~~~q~~~~----~~~~t-----------------------------v~~~l~~~~-~~--~~~~~~~~~~~~~ 120 (237)
T PRK11614 78 -MREAVAIVPEGRRV----FSRMT-----------------------------VEENLAMGG-FF--AERDQFQERIKWV 120 (237)
T ss_pred -HHhCEEEeccCccc----CCCCc-----------------------------HHHHHHHhh-hc--cChhHHHHHHHHH
Confidence 00001111110000 00001 011111000 00 0111123345666
Q ss_pred HHhC-CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGL-GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~l-gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+ ++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 121 l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD 169 (237)
T PRK11614 121 YELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169 (237)
T ss_pred HHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCC
Confidence 7777 464 34567899999999999999999999999999999999998
No 164
>KOG0927|consensus
Probab=99.98 E-value=7.1e-32 Score=247.49 Aligned_cols=182 Identities=46% Similarity=0.740 Sum_probs=141.3
Q ss_pred CcccCCCceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCc
Q psy2689 50 RSTVDDNSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 124 (262)
Q Consensus 50 ~~~~~~~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~ 124 (262)
...+...+.++.+++++++|.+ |+.|.+.+|++|||+|||||||||+|++|+|...+.|.+-.++...+++....
T Consensus 66 ~l~s~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 66 NLFSHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccccCcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 3344556678999999999977 99999999999999999999999999999998788899999999999887766
Q ss_pred hhHHHHHHhhhH-HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh
Q psy2689 125 DSAVNIVLSADK-NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203 (262)
Q Consensus 125 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (262)
...++.+..... .+..+-.....+. -..+ ....+.+...+.++..+..
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~-------------~~~d------------------~~~~~~l~~~~~r~~~~d~ 194 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLA-------------QACD------------------DKEKDELDELYERLDEMDN 194 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH-------------hhcc------------------chhhhHHHHHHHHHHhhCc
Confidence 666555442211 1111110000000 0000 0123344556667777777
Q ss_pred hcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+.++..+|..+||...+.++.+..||||||+|++|||||+.+|++|||||||||||
T Consensus 195 ~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLD 253 (614)
T KOG0927|consen 195 DTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLD 253 (614)
T ss_pred hhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 88889999999999999999999999999999999999999999999999999999998
No 165
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.1e-32 Score=239.34 Aligned_cols=161 Identities=21% Similarity=0.272 Sum_probs=111.5
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++||+++|++ ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|+++.......+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~i~~~~~~~~~- 80 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG--LFEEFEGKVKIDGELLTAENVWNLR- 80 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCCEEEECCEECCcCCHHHHh-
Confidence 4788899888851 8899999999999999999999999999998 6789999999999887432211110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
..+.+..+.... .....+ ..+++.... ............++
T Consensus 81 ------~~i~~v~q~~~~---~~~~~t-----------------------------v~eni~~~~-~~~~~~~~~~~~~~ 121 (277)
T PRK13642 81 ------RKIGMVFQNPDN---QFVGAT-----------------------------VEDDVAFGM-ENQGIPREEMIKRV 121 (277)
T ss_pred ------cceEEEEECHHH---hhccCC-----------------------------HHHHHHhhH-HHcCCCHHHHHHHH
Confidence 011111100000 000000 111111100 00111122234567
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD 172 (277)
T PRK13642 122 DEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172 (277)
T ss_pred HHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 8899999996 46788899999999999999999999999999999999998
No 166
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.98 E-value=4.6e-32 Score=234.97 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=107.7
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|...+.|++|+|.++|.++...+.....
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~----- 76 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA----- 76 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh-----
Confidence 678899998864 8999999999999999999999999999998311368999999999876432211100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH------hcCChhcHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL------KSIEADAAEP 208 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~ 208 (262)
...+.+..+...+. ...+ ...+.......+ ..........
T Consensus 77 -~~~i~~~~q~~~~~----~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (248)
T PRK09580 77 -GEGIFMAFQYPVEI----PGVS-----------------------------NQFFLQTALNAVRSYRGQEPLDRFDFQD 122 (248)
T ss_pred -hcceEEEecCchhc----cchh-----------------------------HHHHHHHhhhhhhcccccccchHHHHHH
Confidence 00000000000000 0000 000000000000 0001112244
Q ss_pred HHHHHHHhCCCChhhhcCCCC-CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTK-EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~-~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+++.....++++. +|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD 177 (248)
T PRK09580 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177 (248)
T ss_pred HHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 677889999996455667675 799999999999999999999999999999998
No 167
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=9.4e-33 Score=225.39 Aligned_cols=162 Identities=26% Similarity=0.350 Sum_probs=126.5
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++||+++|+. ++|++|++|.+++|||||||||||||.++++ +..+++|+|+++|.++...+...+.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR--L~~~d~G~i~i~g~~~~~~~s~~LA---- 74 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR--LLKKDSGEITIDGLELTSTPSKELA---- 74 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH--hccccCceEEEeeeecccCChHHHH----
Confidence 4788999999987 8999999999999999999999999999998 7889999999999999887765543
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
+....+.|.+.+. ...++.+++-.+++ + + -......+++..+.+.
T Consensus 75 ---k~lSILkQ~N~i~----~rlTV~dLv~FGRf---------------P-----------Y--SqGRlt~eD~~~I~~a 119 (252)
T COG4604 75 ---KKLSILKQENHIN----SRLTVRDLVGFGRF---------------P-----------Y--SQGRLTKEDRRIINEA 119 (252)
T ss_pred ---HHHHHHHhhchhh----heeEHHHHhhcCCC---------------c-----------c--cCCCCchHHHHHHHHH
Confidence 3344444444332 23333333322111 1 0 0111223566778899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...+|+..+||||||||.-||..|+++.++++||||.|+||
T Consensus 120 ieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLD 167 (252)
T COG4604 120 IEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 (252)
T ss_pred HHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccc
Confidence 9999997 57899999999999999999999999999999999999998
No 168
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.98 E-value=4.5e-32 Score=231.27 Aligned_cols=163 Identities=27% Similarity=0.363 Sum_probs=108.3
Q ss_pred EEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+.++|+++.|+ . ++||++.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~- 78 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG--LRSVQEGSLKVLGQELYGASEKELV- 78 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEEhHhcCHhHHH-
Confidence 45666666663 1 7888999999999999999999999999998 6789999999999877432211000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.....+.+..+...+ ....+ ..+++.................++
T Consensus 79 ---~~~~~i~~~~q~~~~----~~~~t-----------------------------~~~n~~~~~~~~~~~~~~~~~~~~ 122 (220)
T TIGR02982 79 ---QLRRNIGYIFQAHNL----LGFLT-----------------------------ARQNVQMALELQPNLSYQEARERA 122 (220)
T ss_pred ---HHHhheEEEcCChhh----cCCCC-----------------------------HHHHHHHHHHhccCCCHHHHHHHH
Confidence 000011111110000 00011 011111000000011122334568
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+||+|||||++|||||+.+|++|||||||++||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD 173 (220)
T TIGR02982 123 RAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALD 173 (220)
T ss_pred HHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 8899999996 45678899999999999999999999999999999999998
No 169
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=4.2e-32 Score=215.49 Aligned_cols=167 Identities=29% Similarity=0.415 Sum_probs=126.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++++++.||. ||+|+.+.|+.+.|+||+|+|||||++.|.- +..|.+|+..+-+..........
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl--le~p~sg~l~ia~~~fd~s~~~~------ 73 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL--LEMPRSGTLNIAGNHFDFSKTPS------ 73 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH--HhCCCCCeEEecccccccccCcc------
Confidence 4889999999987 9999999999999999999999999999984 78899999999887765433211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+...++.....+. +...+|+.++ ..+++-+.......+..+.+..++.++
T Consensus 74 -~k~i~~lr~~vgmvf------------------qqy~lwphlt---------v~enlieap~kv~gl~~~qa~~~a~el 125 (242)
T COG4161 74 -DKAIRDLRRNVGMVF------------------QQYNLWPHLT---------VQENLIEAPCRVLGLSKDQALARAEKL 125 (242)
T ss_pred -HHHHHHHHHhhhhhh------------------hhhccCchhH---------HHHHHHhhhHHHhCCCHHHHHHHHHHH
Confidence 111112222211111 1122444444 233444444444566677788899999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+++.+. ...|+.+-.|||||+|||+|||||+.+|++|++||||++||
T Consensus 126 lkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaald 173 (242)
T COG4161 126 LKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred HHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccC
Confidence 9999997 57899999999999999999999999999999999999998
No 170
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.6e-32 Score=236.63 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=109.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+|. .. |++|+|.++|+++........
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM--NDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCcccCCCcceEEEECCEEcccccchHH
Confidence 5889999999964 89999999999999999999999999999984 33 479999999987642110000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. ....+.+..+...+ .. .+ ..+++.... ............
T Consensus 90 ~-----~~~~i~~v~q~~~~----~~-~t-----------------------------v~enl~~~~-~~~~~~~~~~~~ 129 (258)
T PRK14268 90 E-----LRKNVGMVFQKPNP----FP-MS-----------------------------IYDNVAYGP-RIHGANKKDLDG 129 (258)
T ss_pred H-----HhhhEEEEecCCcc----Cc-cc-----------------------------HHHHHHHHH-HHcCCCHHHHHH
Confidence 0 00001111000000 00 00 111111100 111111222344
Q ss_pred HHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 130 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 186 (258)
T PRK14268 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186 (258)
T ss_pred HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence 678889998874 234578899999999999999999999999999999999998
No 171
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.98 E-value=2.5e-32 Score=232.65 Aligned_cols=152 Identities=31% Similarity=0.425 Sum_probs=101.2
Q ss_pred EEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 60 IKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|+++...+....
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~---- 76 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG--LYKPTSGSVLLDGTDIRQLDPADL---- 76 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCCeEEECCEEhHHCCHHHH----
Confidence 678888888842 7999999999999999999999999999998 568999999999987642211100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+.+..+...+ . ..+ +.+.+.-.........+.+
T Consensus 77 ---~~~i~~~~q~~~~---~--~~t------------------------------------v~e~l~~~~~~~~~~~~~~ 112 (220)
T cd03245 77 ---RRNIGYVPQDVTL---F--YGT------------------------------------LRDNITLGAPLADDERILR 112 (220)
T ss_pred ---HhhEEEeCCCCcc---c--cch------------------------------------HHHHhhcCCCCCCHHHHHH
Confidence 0001010000000 0 000 0000100000011234556
Q ss_pred HHHhCCCChhhhcC-----------CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEK-----------STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~-----------~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+++.+ ..++ .+.+||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~l~~~~l~~-~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD 172 (220)
T cd03245 113 AAELAGVTD-FVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172 (220)
T ss_pred HHHHcCcHH-HHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 667777653 3333 346999999999999999999999999999999998
No 172
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=6.1e-32 Score=239.60 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=109.2
Q ss_pred eEEEeeeeEeeCC----------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL----------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~----------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++.......
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~- 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG--LIISETGQTIVGDYAIPANLKKI- 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEEcccccccc-
Confidence 4778888888741 7899999999999999999999999999998 67899999999998763210000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
.....+......+.+ .... ..+. .+ ..+++... .............
T Consensus 83 -------~~~~~~~~~i~~v~q---~~~~---~~~~-----------~t---------v~enl~~~-~~~~~~~~~~~~~ 128 (289)
T PRK13645 83 -------KEVKRLRKEIGLVFQ---FPEY---QLFQ-----------ET---------IEKDIAFG-PVNLGENKQEAYK 128 (289)
T ss_pred -------ccHHHHhccEEEEEe---Ccch---hhhh-----------hH---------HHHHHHHH-HHHcCCCHHHHHH
Confidence 000000000000000 0000 0000 00 11111100 0011111222334
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 129 ~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 182 (289)
T PRK13645 129 KVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 (289)
T ss_pred HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 677889999996456788899999999999999999999999999999999998
No 173
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.98 E-value=6.7e-32 Score=223.48 Aligned_cols=123 Identities=41% Similarity=0.616 Sum_probs=97.5
Q ss_pred EeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 62 VENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 62 i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+...
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G--~~~~~~G~v~~~g~~~~~~~~~~--------- 70 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG--LLKPSSGEILLDGKDLASLSPKE--------- 70 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCcCCHHH---------
Confidence 5677777754 7888999999999999999999999999998 67899999999998764321100
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
+... + . .+.++++.
T Consensus 71 ----~~~~---i-------------------------------------------~----------------~~~q~l~~ 84 (180)
T cd03214 71 ----LARK---I-------------------------------------------A----------------YVPQALEL 84 (180)
T ss_pred ----HHHH---H-------------------------------------------h----------------HHHHHHHH
Confidence 0000 0 0 00016777
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 85 ~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD 129 (180)
T cd03214 85 LGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLD 129 (180)
T ss_pred cCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 8887 45677899999999999999999999999999999999998
No 174
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.98 E-value=5.3e-32 Score=231.59 Aligned_cols=165 Identities=25% Similarity=0.374 Sum_probs=108.1
Q ss_pred CceeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhH
Q psy2689 56 NSVDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 56 ~~~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~ 127 (262)
..-+++++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++.......
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLEN--FYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCcEEEECCCchHHcCHHH
Confidence 3346889999999851 8999999999999999999999999999998 67899999999998764322111
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
.. ..+.+..+...+. ......|+.+... .. . ..... .....
T Consensus 86 ~~-------~~i~~~~q~~~l~----~~tv~~nl~~~~~----------------~~--~---~~~~~-------~~~~~ 126 (226)
T cd03248 86 LH-------SKVSLVGQEPVLF----ARSLQDNIAYGLQ----------------SC--S---FECVK-------EAAQK 126 (226)
T ss_pred HH-------hhEEEEecccHHH----hhhHHHHhccccC----------------CC--C---HHHHH-------HHHHH
Confidence 10 0011111000000 0000011110000 00 0 00000 00111
Q ss_pred HHHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++++.+ |+.+ ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 127 ~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 182 (226)
T cd03248 127 AHAHSFISELASGYDT-EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182 (226)
T ss_pred cCcHHHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 2355677888 7764 4577799999999999999999999999999999999998
No 175
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.5e-32 Score=236.92 Aligned_cols=164 Identities=23% Similarity=0.296 Sum_probs=107.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCc-c--cCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-A--IPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~-~--~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+|... . .|++|+|.++|+++....... .
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~-~- 98 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV-V- 98 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH-H-
Confidence 5889999999975 8999999999999999999999999999999421 1 268999999998874311100 0
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 209 (262)
.....+.+..+...+ . .. + ..+++..... .... ........
T Consensus 99 ---~~~~~i~~v~q~~~~---~-~~-t-----------------------------v~enl~~~~~-~~~~~~~~~~~~~ 140 (268)
T PRK14248 99 ---NLRREIGMVFQKPNP---F-PK-S-----------------------------IYNNITHALK-YAGERRKSVLDEI 140 (268)
T ss_pred ---HHhccEEEEecCCcc---C-cc-c-----------------------------HHHHHHHHHH-hcCCCcHHHHHHH
Confidence 000001111000000 0 00 0 1111111000 0010 11122345
Q ss_pred HHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 141 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 196 (268)
T PRK14248 141 VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196 (268)
T ss_pred HHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccC
Confidence 677788888742 34578899999999999999999999999999999999998
No 176
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=2.7e-32 Score=228.56 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=107.0
Q ss_pred EEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 60 IKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 60 i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++....
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~i~~~~----------- 68 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAG--IMQPSSGNIYYKNCNINNIA----------- 68 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCcccChhh-----------
Confidence 678888888865 7899999999999999999999999999998 67899999999998763210
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.....+..+...+ ....+ ..+++.... ... .....+..+++
T Consensus 69 ~~~~~~~~~~~~~----~~~~t-----------------------------v~~~l~~~~-~~~-----~~~~~~~~~l~ 109 (195)
T PRK13541 69 KPYCTYIGHNLGL----KLEMT-----------------------------VFENLKFWS-EIY-----NSAETLYAAIH 109 (195)
T ss_pred hhhEEeccCCcCC----CccCC-----------------------------HHHHHHHHH-Hhc-----ccHHHHHHHHH
Confidence 0001111000000 00000 111111000 000 12345777889
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 110 ~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 110 YFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred HcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99997 45678899999999999999999999999999999999998
No 177
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=8.4e-32 Score=233.82 Aligned_cols=165 Identities=20% Similarity=0.275 Sum_probs=109.7
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCC-cccC--CceeEEEeccccccCchhHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRA-LAIP--SSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~-~~~p--~~g~i~~~~~~i~~~~~~~~~ 129 (262)
.+|+++|+++.|+. ++||+|.+|+++||+||||||||||+++|+|.. ...| ++|+|.++|+++........
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~- 80 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD- 80 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH-
Confidence 35889999999975 899999999999999999999999999999831 1233 58999999988743211000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 208 (262)
.....+.+..+...+ . .. + ..+++.... ..... .......
T Consensus 81 ----~~~~~i~~v~q~~~~---~-~~-t-----------------------------v~~nl~~~~-~~~~~~~~~~~~~ 121 (250)
T PRK14245 81 ----ELRKNVGMVFQRPNP---F-PK-S-----------------------------IFENVAYGL-RVNGVKDNAFIRQ 121 (250)
T ss_pred ----HHhhheEEEecCCcc---C-cc-c-----------------------------HHHHHHHHH-HHcCCCcHHHHHH
Confidence 000011111110000 0 00 0 111111100 01111 1112345
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 178 (250)
T PRK14245 122 RVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178 (250)
T ss_pred HHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 6788899999853 24577899999999999999999999999999999999998
No 178
>KOG0062|consensus
Probab=99.98 E-value=3.3e-32 Score=248.44 Aligned_cols=150 Identities=52% Similarity=0.784 Sum_probs=106.7
Q ss_pred CCceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 55 DNSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 55 ~~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
+.+.+|.+.+|+.+|++ +.++++..|.+||||||||+|||||||+|+.. +.+++-..+++.......+.
T Consensus 76 ~~~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~------~v~~f~veqE~~g~~t~~~~ 149 (582)
T KOG0062|consen 76 GKSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG------QVSGFHVEQEVRGDDTEALQ 149 (582)
T ss_pred ccccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc------CcCccCchhheeccchHHHh
Confidence 34678999999999997 88999999999999999999999999999962 12222233444333333333
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.++..+..+..++.+...+. ... ..++.
T Consensus 150 ~~l~~D~~~~dfl~~e~~l~-------------------------------------------------~~~---~l~ei 177 (582)
T KOG0062|consen 150 SVLESDTERLDFLAEEKELL-------------------------------------------------AGL---TLEEI 177 (582)
T ss_pred hhhhccHHHHHHHHhhhhhh-------------------------------------------------ccc---hHHHH
Confidence 22222222222221111000 000 11122
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++|..+||++++..+|+++||||||+|++|||||+++||||||||||||||
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 23389999999999999999999999999999999999999999999999998
No 179
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.4e-32 Score=237.33 Aligned_cols=163 Identities=19% Similarity=0.267 Sum_probs=109.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc----CCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI----PSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~----p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
.|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|. ... |++|+|.++|+++.........
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM-NDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-cccccCCCCceEEEECCEECcccccchHH
Confidence 5889999999875 89999999999999999999999999999993 222 5899999999887421100000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC--ChhcHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EADAAE 207 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 207 (262)
....+.+..+...+ . .. + ..+++.... ..... ......
T Consensus 98 -----~~~~i~~v~q~~~~---~-~~-t-----------------------------v~enl~~~~-~~~~~~~~~~~~~ 137 (267)
T PRK14235 98 -----LRARVGMVFQKPNP---F-PK-S-----------------------------IYENVAYGP-RIHGLARSKAELD 137 (267)
T ss_pred -----HhhceEEEecCCCC---C-CC-c-----------------------------HHHHHHHHH-HhcccccchHHHH
Confidence 00001111000000 0 00 0 111111100 01111 112234
Q ss_pred HHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 195 (267)
T PRK14235 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195 (267)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 56788899999853 24567899999999999999999999999999999999998
No 180
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.98 E-value=4.2e-32 Score=237.31 Aligned_cols=172 Identities=26% Similarity=0.363 Sum_probs=110.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC---ceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~---~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++||+++|++ ++||+|.+||+++|+||||||||||+++|+| +..|+ +|+|.++|.++...+.....
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~p~~~~~G~i~~~g~~~~~~~~~~~~- 80 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG--LITGDKSAGSHIELLGRTVQREGRLARD- 80 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhc--cCCCCCCCceEEEECCEecccccccchh-
Confidence 4789999999875 8999999999999999999999999999998 44543 59999999887432100000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.......+.+..+...+ ....+ ..|+.+.... ..................+
T Consensus 81 -~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 132 (262)
T PRK09984 81 -IRKSRANTGYIFQQFNL----VNRLSVLENVLIGALG-----------------------STPFWRTCFSWFTREQKQR 132 (262)
T ss_pred -HHHHHhheEEEcccccc----ccCCcHHHHHHhhhcc-----------------------cccchhhhcccccHHHHHH
Confidence 00000011111110000 00111 0111100000 0000000000011223457
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 133 ~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (262)
T PRK09984 133 ALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLD 184 (262)
T ss_pred HHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 88999999997 46788899999999999999999999999999999999998
No 181
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=1.6e-32 Score=260.41 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=112.4
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+.... .
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~~~~~~~---~- 77 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSS---Q- 77 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCCCCHHHH---H-
Confidence 4889999999975 8999999999999999999999999999998 678999999999988743221100 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH---hcCChhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL---KSIEADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ 210 (262)
...+.+..+...+ ....++ .+++....... ..........++
T Consensus 78 --~~~i~~v~q~~~~----~~~~tv-----------------------------~e~l~~~~~~~~~~~~~~~~~~~~~~ 122 (501)
T PRK10762 78 --EAGIGIIHQELNL----IPQLTI-----------------------------AENIFLGREFVNRFGRIDWKKMYAEA 122 (501)
T ss_pred --hCCEEEEEcchhc----cCCCcH-----------------------------HHHhhhccccccccCccCHHHHHHHH
Confidence 0001111110000 001110 11110000000 001112234568
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 173 (501)
T PRK10762 123 DKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALT 173 (501)
T ss_pred HHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCC
Confidence 8899999997 45688899999999999999999999999999999999998
No 182
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.1e-31 Score=237.00 Aligned_cols=161 Identities=24% Similarity=0.347 Sum_probs=111.3
Q ss_pred eEEEeeeeEeeC-------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch-h
Q psy2689 59 DIKVENFSLSPC-------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-S 126 (262)
Q Consensus 59 ~i~i~~v~~~~~-------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~-~ 126 (262)
+|.++|++++|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++..... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNA--LLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEeccccccHH
Confidence 477888888884 1 7899999999999999999999999999998 678999999999987742110 0
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcH
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAA 206 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (262)
.. .+.+.+..+..... + ...+ ..+++.... ..........
T Consensus 82 ~~-------~~~i~~v~q~~~~~-~--~~~~-----------------------------v~~~l~~~~-~~~~~~~~~~ 121 (280)
T PRK13633 82 DI-------RNKAGMVFQNPDNQ-I--VATI-----------------------------VEEDVAFGP-ENLGIPPEEI 121 (280)
T ss_pred HH-------hhheEEEecChhhh-h--cccc-----------------------------HHHHHHhhH-hhcCCCHHHH
Confidence 00 01111111100000 0 0000 011111000 0111222234
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD 176 (280)
T PRK13633 122 RERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176 (280)
T ss_pred HHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 55688899999997 56788899999999999999999999999999999999998
No 183
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.98 E-value=6.4e-32 Score=234.68 Aligned_cols=166 Identities=22% Similarity=0.246 Sum_probs=110.1
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+|.....|++|+|.++|.++..........
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~-- 83 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH-- 83 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe--
Confidence 36899999999975 89999999999999999999999999999984124789999999998775432110000
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHH------HhcCChhcH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE------LKSIEADAA 206 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~ 206 (262)
..+.+..+...+ ....+ ..+++...... .........
T Consensus 84 ----~~~~~~~q~~~~----~~~~~-----------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~ 126 (252)
T CHL00131 84 ----LGIFLAFQYPIE----IPGVS-----------------------------NADFLRLAYNSKRKFQGLPELDPLEF 126 (252)
T ss_pred ----eeEEEEeccccc----ccccc-----------------------------HHHHHHHhhhhhhcccccccccHHHH
Confidence 000000000000 00000 00001000000 000011122
Q ss_pred HHHHHHHHHhCCCChhhhcCCCC-CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTK-EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~-~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+|+.....++++. .|||||||||+|||||+.+|++|||||||++||
T Consensus 127 ~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 183 (252)
T CHL00131 127 LEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183 (252)
T ss_pred HHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 34677889999996434567776 599999999999999999999999999999998
No 184
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.98 E-value=2.6e-32 Score=249.29 Aligned_cols=150 Identities=27% Similarity=0.393 Sum_probs=102.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc----ccccCchhHHHHHHhhhHHHHHHHH-Hhh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ----EVEASDDSAVNIVLSADKNRVKLLK-ECS 146 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~-~~~ 146 (262)
|+||+|.+||+++|+||||||||||+++|+| +..|++|+|+++|+ ++...+...+. .+.. ...
T Consensus 42 ~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~G--l~~p~~G~I~idG~~~~~~i~~~~~~~l~----------~~r~~~i~ 109 (382)
T TIGR03415 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNG--LNPVSRGSVLVKDGDGSIDVANCDAATLR----------RLRTHRVS 109 (382)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCcEEEECCEecccccccCCHHHHH----------HHhcCCEE
Confidence 7888999999999999999999999999998 67899999999986 33222211110 0000 000
Q ss_pred HHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcC
Q psy2689 147 KLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEK 226 (262)
Q Consensus 147 ~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 226 (262)
.+.+ . ..+++..+ ..+++.... .+..........++.++++.+|+. ...++
T Consensus 110 ~vfQ---~---------------~~l~p~~T---------v~eNi~~~~-~~~g~~~~~~~~~a~e~le~vgL~-~~~~~ 160 (382)
T TIGR03415 110 MVFQ---K---------------FALMPWLT---------VEENVAFGL-EMQGMPEAERRKRVDEQLELVGLA-QWADK 160 (382)
T ss_pred EEEC---C---------------CcCCCCCc---------HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCc-hhhcC
Confidence 0000 0 00001111 112221111 111223334456789999999997 46788
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 227 STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 227 ~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 161 ~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 161 KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 899999999999999999999999999999999998
No 185
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=8.8e-32 Score=233.63 Aligned_cols=164 Identities=28% Similarity=0.351 Sum_probs=107.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++||++.|++ |+||+|.+||++||+||||||||||+++|+|...+.| ++|+|.++|+++........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~-- 80 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN-- 80 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH--
Confidence 3788999999864 8999999999999999999999999999998421223 68999999988742110000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 209 (262)
.....+.+..+...+ . . .+ ..+++.... ..... ........
T Consensus 81 ---~~~~~i~~~~q~~~~---~-~-~t-----------------------------~~~ni~~~~-~~~~~~~~~~~~~~ 122 (250)
T PRK14240 81 ---QLRKRVGMVFQQPNP---F-P-MS-----------------------------IYDNVAYGP-RTHGIKDKKKLDEI 122 (250)
T ss_pred ---HHhccEEEEecCCcc---C-c-cc-----------------------------HHHHHHHHH-HhcCCCCHHHHHHH
Confidence 000001111100000 0 0 00 111111100 01111 11223456
Q ss_pred HHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 123 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (250)
T PRK14240 123 VEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178 (250)
T ss_pred HHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 777888888742 34578899999999999999999999999999999999998
No 186
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.7e-32 Score=230.80 Aligned_cols=155 Identities=27% Similarity=0.346 Sum_probs=105.2
Q ss_pred eeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchh-HHHHHHhhhHHHH
Q psy2689 64 NFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVNIVLSADKNRV 139 (262)
Q Consensus 64 ~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~-~~~~~~~~~~~~~ 139 (262)
+++++|++ |+||+|.+ ++++|+||||||||||+++|+| +..|++|+|.++|.++...... ... .....+
T Consensus 5 ~l~~~~~~~~~~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~~----~~~~~i 77 (214)
T cd03297 5 DIEKRLPDFTLKIDFDLNE-EVTGIFGASGAGKSTLLRCIAG--LEKPDGGTIVLNGTVLFDSRKKINLP----PQQRKI 77 (214)
T ss_pred eeeEecCCeeeCceEEEcc-eeEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEecccccchhhhh----hHhhcE
Confidence 77788876 89999999 9999999999999999999998 6789999999999876421100 000 000000
Q ss_pred HHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCC
Q psy2689 140 KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGF 219 (262)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl 219 (262)
.+..+...+ ....+ ..+++.... ........+.++.++++.+|+
T Consensus 78 ~~~~q~~~~----~~~~t-----------------------------~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~l 121 (214)
T cd03297 78 GLVFQQYAL----FPHLN-----------------------------VRENLAFGL---KRKRNREDRISVDELLDLLGL 121 (214)
T ss_pred EEEecCCcc----CCCCC-----------------------------HHHHHHHHH---hhCCHHHHHHHHHHHHHHcCC
Confidence 000000000 00000 111111100 001112234568889999999
Q ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 220 TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 220 ~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 163 (214)
T cd03297 122 D-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163 (214)
T ss_pred H-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 7 45678899999999999999999999999999999999998
No 187
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=7.7e-32 Score=230.91 Aligned_cols=161 Identities=24% Similarity=0.374 Sum_probs=101.8
Q ss_pred EEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++...+....+..
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~~~-- 78 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMR--FYDPQKGQILIDGIDIRDISRKSLRSM-- 78 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCCEEEECCEeHHHcCHHHHhhh--
Confidence 678889888852 8999999999999999999999999999998 578999999999987643221111100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
+.+..+...+. ......|+.+... .. ....+ ...+ ....+..+
T Consensus 79 -----i~~~~q~~~~~----~~tv~~~~~~~~~----------------~~--~~~~~---~~~~-------~~~~l~~~ 121 (229)
T cd03254 79 -----IGVVLQDTFLF----SGTIMENIRLGRP----------------NA--TDEEV---IEAA-------KEAGAHDF 121 (229)
T ss_pred -----EEEecCCchhh----hhHHHHHHhccCC----------------CC--CHHHH---HHHH-------HHhChHHH
Confidence 11111000000 0000011111000 00 00000 0000 00112334
Q ss_pred HHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+ |+.. ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~~~~~~~~-~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD 171 (229)
T cd03254 122 IMKLPNGYDT-VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171 (229)
T ss_pred HHhCcccccC-HhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 4444 5553 3556789999999999999999999999999999999998
No 188
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=9.6e-32 Score=236.03 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=107.7
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccC--ch
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEAS--DD 125 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~--~~ 125 (262)
.+|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+|. .. |++|+|.++|.++... +.
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM--NDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccccCCCCCceEEEECCEEcccccCCH
Confidence 35899999999975 89999999999999999999999999999983 33 6899999999876421 11
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
...+ ..+.+..+...+ . .. + ..+++.... ...... ..
T Consensus 90 ~~~~-------~~i~~v~q~~~l---~-~~-t-----------------------------v~enl~~~~-~~~~~~-~~ 126 (269)
T PRK14259 90 VEVR-------RRIGMVFQQPNP---F-PK-S-----------------------------IYENIAFGA-RINGYT-GD 126 (269)
T ss_pred HHHh-------hceEEEccCCcc---c-hh-h-----------------------------HHHHHhhhh-hhcCCc-HH
Confidence 0000 001111100000 0 00 0 011111000 011111 11
Q ss_pred HHHHHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 127 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD 186 (269)
T PRK14259 127 MDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186 (269)
T ss_pred HHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 234566777877763 234678899999999999999999999999999999999998
No 189
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.3e-32 Score=234.89 Aligned_cols=165 Identities=21% Similarity=0.328 Sum_probs=108.2
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHHHH
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
|+++|++++|++ |+||+|.+|+++||+||||||||||+++|+|..-+.| ++|+|.++|+++.........
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~-- 82 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS-- 82 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH--
Confidence 788999999964 8999999999999999999999999999999421113 689999999887422110000
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....+.+..+...+ ....+ ..+++.................++.
T Consensus 83 ---~~~~i~~~~q~~~~----~~~~t-----------------------------v~enl~~~~~~~~~~~~~~~~~~~~ 126 (252)
T PRK14256 83 ---IRRRVGMVFQKPNP----FPAMS-----------------------------IYDNVIAGYKLNGRVNRSEADEIVE 126 (252)
T ss_pred ---hhccEEEEecCCCC----CCcCc-----------------------------HHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 00001111000000 00001 1111111110001011122345678
Q ss_pred HHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||++||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD 180 (252)
T PRK14256 127 SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180 (252)
T ss_pred HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 8898999853 24567899999999999999999999999999999999998
No 190
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.98 E-value=4.3e-32 Score=238.52 Aligned_cols=162 Identities=27% Similarity=0.299 Sum_probs=109.1
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC--------ceeEEEeccccccCchh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS--------SIDLLYCEQEVEASDDS 126 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~--------~g~i~~~~~~i~~~~~~ 126 (262)
|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|+ +|+|.++|.++......
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG--~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG--DLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCcccccccCCceEEEECCEEcccCCHH
Confidence 778999999875 8999999999999999999999999999998 56676 89999999876432211
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
... ..+.+..+.... ....+ ..|+.+... ............
T Consensus 80 ~~~-------~~~~~v~q~~~~----~~~~tv~e~l~~~~~---------------------------~~~~~~~~~~~~ 121 (272)
T PRK13547 80 RLA-------RLRAVLPQAAQP----AFAFSAREIVLLGRY---------------------------PHARRAGALTHR 121 (272)
T ss_pred HHH-------hhcEEecccCCC----CCCCcHHHHHhhccc---------------------------ccccccccCCHH
Confidence 110 001111110000 00011 011110000 000000000112
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHc---------cCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF---------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~---------~~P~lLlLDEPT~~LD 262 (262)
....+.++++.+|+.. ..++++.+|||||||||+|||||+ .+|++|||||||++||
T Consensus 122 ~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD 186 (272)
T PRK13547 122 DGEIAWQALALAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186 (272)
T ss_pred HHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCC
Confidence 3346788999999974 567889999999999999999999 5999999999999998
No 191
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.1e-32 Score=223.37 Aligned_cols=160 Identities=27% Similarity=0.338 Sum_probs=113.6
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+.+|++++..+ ++||++.+||+.||+||||||||||||.|+| ...|++|++.++|.++.......+..
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsG--el~p~~G~v~~~g~~l~~~~~~~lA~--- 75 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG--ELSPDSGEVTLNGVPLNSWPPEELAR--- 75 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhC--ccCCCCCeEeeCCcChhhCCHHHHHH---
Confidence 4788999998765 8999999999999999999999999999998 46899999999999987766543321
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh--cHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD--AAEPRAR 211 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 211 (262)
....+.|.+.+. .++++.+++.-+. + -...... +....++
T Consensus 76 ----~raVlpQ~s~la----FpFtv~eVV~mGr---------------------------~---p~~~g~~~~e~~~i~~ 117 (259)
T COG4559 76 ----HRAVLPQNSSLA----FPFTVQEVVQMGR---------------------------I---PHRSGREPEEDERIAA 117 (259)
T ss_pred ----HhhhcccCcccc----cceEHHHHHHhcc---------------------------c---ccccCCCchhhHHHHH
Confidence 112222211111 1122111111000 0 0001112 3344578
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccC------CCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE------PTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~------P~lLlLDEPT~~LD 262 (262)
.+|+..++. ....|...+|||||||||.|||.|++- +.+|+||||||+||
T Consensus 118 ~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 118 QALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred HHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence 889999987 567788889999999999999999873 45899999999998
No 192
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1e-31 Score=233.40 Aligned_cols=164 Identities=25% Similarity=0.333 Sum_probs=108.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|.++|++++|++ ++||+|.+||++||+||||||||||+++|+|.....| ++|+|.++|+++........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~-- 82 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV-- 82 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH--
Confidence 5889999999974 8999999999999999999999999999998422345 58999999987742110000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 209 (262)
.....+.+..+...+ . . .+ ..+++.... ...... ......+
T Consensus 83 ---~~~~~i~~v~q~~~~---~-~-~t-----------------------------v~enl~~~~-~~~~~~~~~~~~~~ 124 (252)
T PRK14239 83 ---DLRKEIGMVFQQPNP---F-P-MS-----------------------------IYENVVYGL-RLKGIKDKQVLDEA 124 (252)
T ss_pred ---hhhhcEEEEecCCcc---C-c-Cc-----------------------------HHHHHHHHH-HHcCCCcHHHHHHH
Confidence 000001111100000 0 0 00 111111110 011111 1123456
Q ss_pred HHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 777888888742 34578899999999999999999999999999999999998
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=6.6e-32 Score=232.05 Aligned_cols=156 Identities=31% Similarity=0.388 Sum_probs=109.3
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
.++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|..|+|.++|+++......
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g--~~~~~~G~i~~~g~~~~~~~~~--------- 70 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG--FETPTSGEILLDGKDITNLPPH--------- 70 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEEcCcCChh---------
Confidence 57788888864 8899999999999999999999999999998 6789999999999877532210
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
...+.+..+...+ ....+ ..+++.... ............++..+++
T Consensus 71 ~~~i~~~~q~~~~----~~~~t-----------------------------~~~nl~~~~-~~~~~~~~~~~~~~~~~l~ 116 (232)
T cd03300 71 KRPVNTVFQNYAL----FPHLT-----------------------------VFENIAFGL-RLKKLPKAEIKERVAEALD 116 (232)
T ss_pred hcceEEEeccccc----CCCCc-----------------------------HHHHHHHHH-HhcCCCHHHHHHHHHHHHH
Confidence 0011111110000 00000 011111000 0111112233456788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++.+..||+|||||++|||||+.+|++|||||||++||
T Consensus 117 ~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 117 LVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99997 45678899999999999999999999999999999999998
No 194
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=8.9e-32 Score=234.89 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=108.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc--C---CceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI--P---SSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~--p---~~g~i~~~~~~i~~~~~~~~ 128 (262)
+|+++|+++.|++ ++||+|.+||++||+||||||||||+++|+|. .. | ++|+|.++|+++........
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM--IQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--ccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999975 89999999999999999999999999999994 33 3 58999999987742111000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAE 207 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 207 (262)
. ....+.+..+...+ . .. + ..+++... ...... ......
T Consensus 90 ~-----~~~~i~~v~q~~~~---~-~~-t-----------------------------v~enl~~~-~~~~~~~~~~~~~ 129 (259)
T PRK14274 90 E-----LRKNIGMVFQKGNP---F-PQ-S-----------------------------IFDNVAYG-PRIHGTKNKKKLQ 129 (259)
T ss_pred H-----HhhceEEEecCCcc---c-cc-C-----------------------------HHHHHHhH-HHhcCCCCHHHHH
Confidence 0 00001111100000 0 00 0 11111110 011111 112234
Q ss_pred HHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 130 ~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 187 (259)
T PRK14274 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187 (259)
T ss_pred HHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 45778888888852 34578899999999999999999999999999999999998
No 195
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=233.25 Aligned_cols=164 Identities=27% Similarity=0.341 Sum_probs=106.5
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccccccCchhH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~i~~~~~~~ 127 (262)
++++++|++++|++ ++||+|.+|+++||+||||||||||+++|+|. ..| .+|+|.++|+++.......
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM--HDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCcCCCCceeEEECCEEcccCccCH
Confidence 36889999999975 89999999999999999999999999999983 443 3899999998764211000
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAA 206 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 206 (262)
.. ....+.+..+...+ ....+ ..+++..... .... .....
T Consensus 81 ~~-----~~~~i~~~~q~~~~----~~~~t-----------------------------~~enl~~~~~-~~~~~~~~~~ 121 (252)
T PRK14272 81 VA-----MRRRVGMVFQKPNP----FPTMS-----------------------------VFDNVVAGLK-LAGIRDRDHL 121 (252)
T ss_pred HH-----hhceeEEEeccCcc----CcCCC-----------------------------HHHHHHHHHH-hcCCCCHHHH
Confidence 00 00001111110000 00001 1111111100 0111 11122
Q ss_pred HHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.+.+++..+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 180 (252)
T PRK14272 122 MEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180 (252)
T ss_pred HHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 345666677676531 34578899999999999999999999999999999999998
No 196
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-31 Score=234.79 Aligned_cols=165 Identities=26% Similarity=0.289 Sum_probs=110.7
Q ss_pred CCceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccCc
Q psy2689 55 DNSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEASD 124 (262)
Q Consensus 55 ~~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~~ 124 (262)
..+.+|+++|++++|++ ++||+|.+||+++|+||||||||||+++|+| +.. |.+|+|.++|.++....
T Consensus 17 ~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G--l~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 17 AAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR--MNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred ccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc--cCCcCCCCCCceEEEECCEEccccc
Confidence 33557899999999975 8999999999999999999999999999998 344 47999999998764321
Q ss_pred h-hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh
Q psy2689 125 D-SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203 (262)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (262)
. ..+ ...+.+..+...+ . . .+ ..+++............
T Consensus 95 ~~~~~-------~~~i~~v~q~~~l---~-~-~t-----------------------------v~eni~~~~~~~~~~~~ 133 (276)
T PRK14271 95 DVLEF-------RRRVGMLFQRPNP---F-P-MS-----------------------------IMDNVLAGVRAHKLVPR 133 (276)
T ss_pred hhHHH-------hhheEEeccCCcc---C-C-cc-----------------------------HHHHHHHHHHhccCCCH
Confidence 0 000 0011111110000 0 0 00 11111100000000111
Q ss_pred hcHHHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
......+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||++||
T Consensus 134 ~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD 195 (276)
T PRK14271 134 KEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195 (276)
T ss_pred HHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 122335667888888863 23567789999999999999999999999999999999998
No 197
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=234.03 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=110.5
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc----cCCceeEEEeccccccCchhHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA----IPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~----~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.+|.++|++++|++ ++||+|.+||++||+||||||||||+++|+|. +. .|++|+|.++|.++........
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM-NDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cCccCCCCcceEEEECCEEcccccCChH
Confidence 46899999999975 89999999999999999999999999999994 22 2689999999987742110000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
...+.+.+..+...+ . .. + ..+++.................
T Consensus 98 -----~~~~~i~~v~q~~~~---~-~~-t-----------------------------v~eni~~~~~~~~~~~~~~~~~ 138 (267)
T PRK14237 98 -----EMRKHIGMVFQRPNP---F-AK-S-----------------------------IYENITFALERAGVKDKKVLDE 138 (267)
T ss_pred -----HHhcceEEEecCCcc---c-cc-c-----------------------------HHHHHHhHHHhcCCCCHHHHHH
Confidence 000011111100000 0 00 0 1111111110000011122345
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 139 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD 195 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195 (267)
T ss_pred HHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6778888888842 34678899999999999999999999999999999999998
No 198
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.97 E-value=4.3e-32 Score=246.85 Aligned_cols=157 Identities=27% Similarity=0.361 Sum_probs=106.4
Q ss_pred eeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHH
Q psy2689 64 NFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140 (262)
Q Consensus 64 ~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (262)
|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++........ .......+.
T Consensus 4 ~l~~~~~~~~~~isl~i~~Gei~~l~G~nGsGKSTLl~~iaG--l~~p~~G~I~~~g~~i~~~~~~~~---~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAG--LTRPDEGEIVLNGRTLFDSRKGIF---LPPEKRRIG 78 (354)
T ss_pred EEEEEECCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECccCccccc---cchhhCCeE
Confidence 56666665 7899999999999999999999999999998 678999999999988743210000 000000011
Q ss_pred HHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCC
Q psy2689 141 LLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT 220 (262)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~ 220 (262)
+..+.. .+++..+ ..+++.... ..........++.++++.+|+.
T Consensus 79 ~v~q~~------------------------~l~~~~t---------v~enl~~~~---~~~~~~~~~~~~~~~l~~~gL~ 122 (354)
T TIGR02142 79 YVFQEA------------------------RLFPHLS---------VRGNLRYGM---KRARPSERRISFERVIELLGIG 122 (354)
T ss_pred EEecCC------------------------ccCCCCc---------HHHHHHHHh---hccChhHHHHHHHHHHHHcCCh
Confidence 110000 0000001 111111110 0111122345688999999997
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 221 ~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 -~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD 163 (354)
T TIGR02142 123 -HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163 (354)
T ss_pred -hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 46789999999999999999999999999999999999998
No 199
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=7.4e-32 Score=260.34 Aligned_cols=161 Identities=29% Similarity=0.366 Sum_probs=113.4
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++||++.|. + |+||+|++|+++|||||||||||||+++|+| ++ |++|+|.++|.++...+...++..+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g--~~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG--FL-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CC-CCCcEEEECCEecccCCHHHHHhhe
Confidence 489999997653 2 8999999999999999999999999999998 66 8999999999999776655443333
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|. ..+ .+.+..+|+.+..... + .+.+ ... .....+.+
T Consensus 426 ~~v~Q~-------~~L----F~~TI~eNI~~g~~~~---------------~---~eei---~~a-------l~~a~l~~ 466 (588)
T PRK11174 426 SWVGQN-------PQL----PHGTLRDNVLLGNPDA---------------S---DEQL---QQA-------LENAWVSE 466 (588)
T ss_pred EEecCC-------CcC----CCcCHHHHhhcCCCCC---------------C---HHHH---HHH-------HHHhCHHH
Confidence 322222 111 1233345555431100 0 0011 111 11223455
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.+ |+++...++ ...||||||||++|||||+++|++||||||||+||
T Consensus 467 ~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 467 FLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred HHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 56665 777655545 56799999999999999999999999999999999
No 200
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=4.2e-32 Score=233.79 Aligned_cols=160 Identities=26% Similarity=0.390 Sum_probs=101.1
Q ss_pred EEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 61 KVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 61 ~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++|+++.|+. ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++...+......
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~~--- 76 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR--FYVPENGRVLVDGHDLALADPAWLRR--- 76 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCCEEEECCeehHhcCHHHHhh---
Confidence 56777777741 7889999999999999999999999999998 67899999999998764322111100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.+.+..+...+ . ......|+.+... .. .... +...+ ....+.++
T Consensus 77 ----~i~~~~q~~~~---~-~~tv~~nl~~~~~---------------~~---~~~~---~~~~~-------~~~~~~~~ 120 (237)
T cd03252 77 ----QVGVVLQENVL---F-NRSIRDNIALADP---------------GM---SMER---VIEAA-------KLAGAHDF 120 (237)
T ss_pred ----cEEEEcCCchh---c-cchHHHHhhccCC---------------CC---CHHH---HHHHH-------HHcCcHHH
Confidence 01111110000 0 0000111111000 00 0000 00000 11123445
Q ss_pred HHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+ ++.. ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 l~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD 170 (237)
T cd03252 121 ISELPEGYDT-IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170 (237)
T ss_pred HHhCcccccc-hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 5555 5553 4567889999999999999999999999999999999998
No 201
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.4e-32 Score=231.87 Aligned_cols=156 Identities=28% Similarity=0.419 Sum_probs=109.0
Q ss_pred EEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 61 KVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 61 ~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
.++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...... .
T Consensus 2 ~~~~l~~~~~~~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G--~~~p~~G~v~i~g~~~~~~~~~---------~ 70 (235)
T cd03299 2 KVENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAG--FIKPDSGKILLNGKDITNLPPE---------K 70 (235)
T ss_pred eeEeEEEEeCCceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CcCCCceEEEECCEEcCcCChh---------H
Confidence 56777777764 8899999999999999999999999999998 6789999999999877432110 0
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
..+.+..+...+ ....+ ..+++.... .............+.++++.
T Consensus 71 ~~i~~~~q~~~~----~~~~t-----------------------------~~e~l~~~~-~~~~~~~~~~~~~~~~~l~~ 116 (235)
T cd03299 71 RDISYVPQNYAL----FPHMT-----------------------------VYKNIAYGL-KKRKVDKKEIERKVLEIAEM 116 (235)
T ss_pred cCEEEEeecCcc----CCCcc-----------------------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 001111000000 00000 111111110 01111122344567889999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 117 ~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD 161 (235)
T cd03299 117 LGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALD 161 (235)
T ss_pred cCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 9997 55778899999999999999999999999999999999998
No 202
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=232.12 Aligned_cols=162 Identities=23% Similarity=0.317 Sum_probs=107.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++|++++|+. ++||+|.+||++||+||||||||||+++|+|. .. |.+|+|.++|+++........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM--NDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--cccccCCCcceEEEECCEEcccccchHH
Confidence 4789999999975 89999999999999999999999999999994 33 479999999987642111000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAE 207 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 207 (262)
.....+.+..+...+ . . .+ ..+++..... .... ......
T Consensus 82 -----~~~~~i~~~~q~~~~---~-~-~t-----------------------------v~enl~~~~~-~~~~~~~~~~~ 121 (251)
T PRK14251 82 -----ELRKEVGMVFQQPTP---F-P-FS-----------------------------VYDNVAYGLK-IAGVKDKELID 121 (251)
T ss_pred -----HhhccEEEEecCCcc---C-C-Cc-----------------------------HHHHHHHHHH-HcCCCCHHHHH
Confidence 000001111100000 0 0 00 1111111000 1111 111233
Q ss_pred HHHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14251 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179 (251)
T ss_pred HHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCC
Confidence 4577788888884 234577889999999999999999999999999999999998
No 203
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=6.8e-32 Score=230.94 Aligned_cols=146 Identities=25% Similarity=0.288 Sum_probs=107.5
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
+.++++++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++.....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~p~~G~i~~~g~~~~~~~~--------- 91 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG--IYPPDSGTVTVRGRVSSLLGL--------- 91 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEchhhcc---------
Confidence 667888888876 8999999999999999999999999999998 678999999999886521100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
... + .+..++ .|+.+ .. ............++.++
T Consensus 92 ---~~~-------~----~~~~tv~enl~~------------------------------~~-~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 92 ---GGG-------F----NPELTGRENIYL------------------------------NG-RLLGLSRKEIDEKIDEI 126 (224)
T ss_pred ---ccc-------C----CCCCcHHHHHHH------------------------------HH-HHcCCCHHHHHHHHHHH
Confidence 000 0 011111 11111 00 00111112233457788
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 127 l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 127 IEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 8899997 45678899999999999999999999999999999999998
No 204
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.4e-32 Score=257.07 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=111.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc--CCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI--PSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~--p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+|+|+| +.. |++|+|.++|.++...+.....
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~~~G~i~~~g~~~~~~~~~~~~-- 80 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG--VYPHGTYEGEIIFEGEELQASNIRDTE-- 80 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC--CCCCCCCCeEEEECCEECCCCCHHHHH--
Confidence 5899999999975 8999999999999999999999999999998 444 4799999999887432211000
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH--hcCChhcHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL--KSIEADAAEPR 209 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~ 209 (262)
...+.+..+...+ ....+ ..+++....... ..........+
T Consensus 81 ----~~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~~~~ 123 (506)
T PRK13549 81 ----RAGIAIIHQELAL----VKELS-----------------------------VLENIFLGNEITPGGIMDYDAMYLR 123 (506)
T ss_pred ----HCCeEEEEecccc----CCCCc-----------------------------HHHHhhhcccccccCCcCHHHHHHH
Confidence 0001111100000 00011 111111000000 00111223456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 124 ~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 175 (506)
T PRK13549 124 AQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT 175 (506)
T ss_pred HHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 88899999996 45788899999999999999999999999999999999998
No 205
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=231.18 Aligned_cols=160 Identities=23% Similarity=0.319 Sum_probs=106.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccC-chhH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEAS-DDSA 127 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~-~~~~ 127 (262)
.++++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|. .. |++|+|.++|.++... +...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM--NDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh--cccccCCCCceEEEECCEEcccccchHH
Confidence 4788999998865 89999999999999999999999999999983 34 4689999999876421 1111
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAA 206 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 206 (262)
++ ..+.+..+...+ . . .+ ..+++.... ...... ....
T Consensus 81 ~~-------~~i~~~~q~~~~---~-~-~t-----------------------------v~~~l~~~~-~~~~~~~~~~~ 118 (249)
T PRK14253 81 LR-------IKVGMVFQKPNP---F-P-MS-----------------------------IYENVAYGL-RAQGIKDKKVL 118 (249)
T ss_pred HH-------hheeEEecCCCc---C-c-cc-----------------------------HHHHHHhHH-HhcCCCchHHH
Confidence 00 011111110000 0 0 00 011111000 001111 1123
Q ss_pred HHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 177 (249)
T PRK14253 119 DEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177 (249)
T ss_pred HHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 345667788888742 34567889999999999999999999999999999999998
No 206
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.6e-32 Score=257.17 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=112.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ |+||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~G--l~~p~~G~i~~~g~~i~~~~~~~~~---- 78 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG--IHEPTKGTITINNINYNKLDHKLAA---- 78 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC--CcCCCccEEEECCEECCCCCHHHHH----
Confidence 5889999999975 8999999999999999999999999999998 6789999999999887543211000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc---CChhcHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS---IEADAAEPR 209 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~ 209 (262)
...+.+..+...+ ....++ .|+.+... ....... ........+
T Consensus 79 --~~~i~~v~q~~~~----~~~~tv~e~l~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 125 (510)
T PRK09700 79 --QLGIGIIYQELSV----IDELTVLENLYIGRH---------------------------LTKKVCGVNIIDWREMRVR 125 (510)
T ss_pred --HCCeEEEeecccc----cCCCcHHHHhhhccc---------------------------cccccccccccCHHHHHHH
Confidence 0001111110000 000110 11100000 0000000 011223456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 126 ~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD 177 (510)
T PRK09700 126 AAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177 (510)
T ss_pred HHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 88899999997 45788999999999999999999999999999999999999
No 207
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=231.74 Aligned_cols=163 Identities=25% Similarity=0.269 Sum_probs=107.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~~~~~~ 128 (262)
+|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|. .. |++|+|.++|.++........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4789999999864 89999999999999999999999999999983 33 389999999987642110000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
.....+.+..+...+ .. .+ ..+++...............+.
T Consensus 81 -----~~~~~i~~~~q~~~~----~~-~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~ 121 (250)
T PRK14262 81 -----EYRKKVGMVFQKPTP----FP-MS-----------------------------IYDNVAFGPRIHGVKSKHKLDR 121 (250)
T ss_pred -----HhhhhEEEEecCCcc----Cc-cc-----------------------------HHHHHHHHHHHcCCCcHHHHHH
Confidence 000001111000000 00 00 1111111110000011112344
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD 178 (250)
T PRK14262 122 IVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178 (250)
T ss_pred HHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 5677888888853 24678899999999999999999999999999999999998
No 208
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.5e-31 Score=253.02 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=110.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+|+|+| +..|++|+|.+++.++...+....
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G--~~~p~~G~i~~~~~~~~~~~~~~~----- 75 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAG--ELPLLSGERQSQFSHITRLSFEQL----- 75 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCceEEECCcccccCCHHHH-----
Confidence 4889999999975 8999999999999999999999999999998 678999999998876532211100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.+.+.+..+..... .+..... .... .+.+.+. . ......++.++
T Consensus 76 --~~~i~~~~q~~~~~------------~~~~~~~----~~~~----------------~~~~~~~-~-~~~~~~~~~~~ 119 (490)
T PRK10938 76 --QKLVSDEWQRNNTD------------MLSPGED----DTGR----------------TTAEIIQ-D-EVKDPARCEQL 119 (490)
T ss_pred --HHHhceeccCcchh------------hcccchh----hccc----------------cHHHhcc-c-chhHHHHHHHH
Confidence 00111111100000 0000000 0000 0011110 0 01234568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 167 (490)
T PRK10938 120 AQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167 (490)
T ss_pred HHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 9999997 46789999999999999999999999999999999999998
No 209
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=8.6e-32 Score=255.86 Aligned_cols=157 Identities=23% Similarity=0.252 Sum_probs=112.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~---- 84 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG--IVPPDSGTLEIGGNPCARLTPAKAH---- 84 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECCCCCHHHHH----
Confidence 5899999999975 8999999999999999999999999999998 6789999999999877432211000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..+...+ ....+ ..+++... +. .......++.++
T Consensus 85 --~~~i~~v~q~~~~----~~~~t-----------------------------v~e~l~~~---~~--~~~~~~~~~~~~ 124 (510)
T PRK15439 85 --QLGIYLVPQEPLL----FPNLS-----------------------------VKENILFG---LP--KRQASMQKMKQL 124 (510)
T ss_pred --hCCEEEEeccCcc----CCCCc-----------------------------HHHHhhcc---cc--cchHHHHHHHHH
Confidence 0000011000000 00001 11111100 00 011234568889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 125 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD 172 (510)
T PRK15439 125 LAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172 (510)
T ss_pred HHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 9999997 45688899999999999999999999999999999999998
No 210
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1e-30 Score=254.22 Aligned_cols=175 Identities=29% Similarity=0.394 Sum_probs=109.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~~ 132 (262)
+|+++|++++|++ ++||+|.+|+++||+|||||||||||++|+| +..|++|+|.+++.. +............
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG--~~~p~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG--EVLLDDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC--CCCCCCeEEEeCCCCEEEEeccCCCCCCC
Confidence 5889999999976 8999999999999999999999999999998 678999999987642 1110000000000
Q ss_pred hhhHHHH-----HHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 133 SADKNRV-----KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 133 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
....+.. .+......+..+. .. +......+....+..+...+.........
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 136 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDIS----------------------HL--VETDPSEKNLNELAKLQEQLDHHNLWQLE 136 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHH----------------------HH--hccCchHHHHHHHHHHHHHHHhcCcccHH
Confidence 0000000 0000000000000 00 00000000000111111112222223345
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+||. .++++.+|||||||||+|||||+.+|+||||||||||||
T Consensus 137 ~~~~~~l~~lgl~---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD 188 (635)
T PRK11147 137 NRINEVLAQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188 (635)
T ss_pred HHHHHHHHhCCCC---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence 6789999999996 268899999999999999999999999999999999998
No 211
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=1.6e-31 Score=229.46 Aligned_cols=143 Identities=29% Similarity=0.406 Sum_probs=100.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...... ..+..+...+
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~------------~~~v~q~~~l--- 65 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISG--LAQPTSGGVILEGKQITEPGPD------------RMVVFQNYSL--- 65 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEECCCCChh------------heEEecCccc---
Confidence 5788999999999999999999999999998 6789999999999887432110 0011110000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHH-HHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD-ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
....+ ..+++..... ............++.++++.+|+. ...++++.+
T Consensus 66 -~~~~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~ 114 (230)
T TIGR01184 66 -LPWLT-----------------------------VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQ 114 (230)
T ss_pred -CCCCC-----------------------------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhh
Confidence 00011 1111111100 001111223345678899999997 467888999
Q ss_pred CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||||||+|||||+.+|++|||||||++||
T Consensus 115 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 99999999999999999999999999999998
No 212
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=236.03 Aligned_cols=164 Identities=21% Similarity=0.312 Sum_probs=110.5
Q ss_pred ceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc----cCCceeEEEeccccccCchhH
Q psy2689 57 SVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA----IPSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~----~p~~g~i~~~~~~i~~~~~~~ 127 (262)
...|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+|. +. .|++|+|.++|+++.......
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM-NDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCcccCCCCceEEEECCEEccccccch
Confidence 346899999999975 89999999999999999999999999999984 22 168999999998764211000
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
.. ....+.+..+...+ . .. + ..+++.... .+..... ...
T Consensus 116 ~~-----~~~~i~~v~q~~~l---~-~~-t-----------------------------v~enl~~~~-~~~~~~~-~~~ 154 (285)
T PRK14254 116 VA-----LRRRIGMVFQKPNP---F-PK-S-----------------------------IYDNVAYGL-KIQGYDG-DID 154 (285)
T ss_pred Hh-----hhccEEEEecCCcc---C-cC-C-----------------------------HHHHHHHHH-HHcCCcH-HHH
Confidence 00 00000010000000 0 00 0 111111110 1111111 234
Q ss_pred HHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 155 ~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD 212 (285)
T PRK14254 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212 (285)
T ss_pred HHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 56788899998852 34578899999999999999999999999999999999998
No 213
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=1.2e-31 Score=233.42 Aligned_cols=159 Identities=21% Similarity=0.293 Sum_probs=108.9
Q ss_pred eEEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC----CceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP----SSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p----~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++|++++|+. ++||+|.+|++++|+||||||||||+++|+| +..| ++|+|.++|+++.....
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~~~~~~~~G~i~~~g~~i~~~~~----- 76 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG--ILPAGVRQTAGRVLLDGKPVAPCAL----- 76 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCCcCCEEEECCeecccccc-----
Confidence 5889999998843 8999999999999999999999999999998 4566 89999999987631100
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
....+.+..+.. .. .+ ....+ ..+++... +........+.++
T Consensus 77 ----~~~~i~~v~q~~---------~~----~~----------------~~~~~--~~~~~~~~---~~~~~~~~~~~~~ 118 (254)
T PRK10418 77 ----RGRKIATIMQNP---------RS----AF----------------NPLHT--MHTHARET---CLALGKPADDATL 118 (254)
T ss_pred ----ccceEEEEecCC---------cc----cc----------------Ccccc--HHHHHHHH---HHHcCCChHHHHH
Confidence 000011111000 00 00 00000 00111110 0001111233568
Q ss_pred HHHHHhCCCChh--hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKE--MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~--~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+++... ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 119 ~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 172 (254)
T PRK10418 119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 889999999742 4578899999999999999999999999999999999998
No 214
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.5e-31 Score=227.99 Aligned_cols=152 Identities=26% Similarity=0.338 Sum_probs=99.2
Q ss_pred EEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 60 IKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++...+...+.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~~~~~~~--- 77 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR--LVELSSGSILIDGVDISKIGLHDLR--- 77 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHc--CCCCCCCEEEECCEEhHhCCHHHHh---
Confidence 677888888842 7999999999999999999999999999998 6789999999999876432211110
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+.+..+...+. ......|+.+ ... ....++.+
T Consensus 78 ----~~i~~~~q~~~l~----~~tv~enl~~----------------------------------~~~----~~~~~~~~ 111 (221)
T cd03244 78 ----SRISIIPQDPVLF----SGTIRSNLDP----------------------------------FGE----YSDEELWQ 111 (221)
T ss_pred ----hhEEEECCCCccc----cchHHHHhCc----------------------------------CCC----CCHHHHHH
Confidence 0011111000000 0000001000 000 01112233
Q ss_pred HHHhCCCChh----------hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKE----------MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~----------~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+++... ..++++..||+|||||++|||||+.+|++|||||||++||
T Consensus 112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD 171 (221)
T cd03244 112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVD 171 (221)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 3333333211 2346789999999999999999999999999999999998
No 215
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=1.2e-31 Score=263.23 Aligned_cols=161 Identities=30% Similarity=0.407 Sum_probs=111.0
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.+ |+||+|++|+++||+||||||||||+|+|+| ++.|++|+|.++|.++...+...++..
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g--l~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG--FETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 5899999999942 8999999999999999999999999999998 789999999999999987766554433
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+..+|+.+.... ..+ ++...++ ...+.
T Consensus 529 i~~v~Q~~~lf-----------~gTI~eNi~~~~~~-------------------~~e---~i~~al~-------~a~l~ 568 (686)
T TIGR03797 529 LGVVLQNGRLM-----------SGSIFENIAGGAPL-------------------TLD---EAWEAAR-------MAGLA 568 (686)
T ss_pred cEEEccCCccC-----------cccHHHHHhcCCCC-------------------CHH---HHHHHHH-------HcCcH
Confidence 33332222111 12223344332100 000 0111111 01122
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |+++...+. ...||||||||++|||||+++|++||||||||+||
T Consensus 569 ~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD 620 (686)
T TIGR03797 569 EDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620 (686)
T ss_pred HHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 233322 555443333 46799999999999999999999999999999999
No 216
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-31 Score=257.89 Aligned_cols=167 Identities=25% Similarity=0.350 Sum_probs=115.0
Q ss_pred eeEEEeeeeEeeC------------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 58 VDIKVENFSLSPC------------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 58 ~~i~i~~v~~~~~------------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
.+|+++|+++.|+ . ++||+|.+||++||+||||||||||+++|+| +..|++|+|.|+|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G--l~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR--LVESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc--CCCCCCcEEEECCEECC
Confidence 3689999999984 1 8999999999999999999999999999998 66899999999998875
Q ss_pred cCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC
Q psy2689 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201 (262)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (262)
..+..... .+......+.+ .... .+.+..+ ..+++..... +...
T Consensus 390 ~~~~~~~~----------~~~~~i~~v~Q---~~~~-------------~l~~~~t---------v~~~l~~~~~-~~~~ 433 (623)
T PRK10261 390 TLSPGKLQ----------ALRRDIQFIFQ---DPYA-------------SLDPRQT---------VGDSIMEPLR-VHGL 433 (623)
T ss_pred cCCHHHHH----------HhcCCeEEEec---Cchh-------------hcCCCCC---------HHHHHHHHHH-HcCC
Confidence 33211100 00000011100 0000 0000000 1111211111 1111
Q ss_pred -ChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 202 -EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 202 -~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.......++.++|+.+|+.....++++++|||||||||+|||||+.+|+||||||||++||
T Consensus 434 ~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 1223346788999999996456789999999999999999999999999999999999999
No 217
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=2.5e-31 Score=227.00 Aligned_cols=150 Identities=31% Similarity=0.464 Sum_probs=106.3
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.+++.++.....
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~~~~~~~~~~---------- 69 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG--ILRPTSGEIIFDGHPWTRKDL---------- 69 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEecccccc----------
Confidence 56788888764 8899999999999999999999999999998 578999999999886531100
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
..+.+..+... +++..+ ..+++... ..+.. ....++.++++
T Consensus 70 -~~~~~~~q~~~------------------------~~~~~t---------~~~~~~~~-~~~~~----~~~~~~~~~l~ 110 (223)
T TIGR03740 70 -HKIGSLIESPP------------------------LYENLT---------ARENLKVH-TTLLG----LPDSRIDEVLN 110 (223)
T ss_pred -ccEEEEcCCCC------------------------ccccCC---------HHHHHHHH-HHHcC----CCHHHHHHHHH
Confidence 00000000000 000000 11111111 01111 12346788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 111 ~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 111 IVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99997 45678899999999999999999999999999999999998
No 218
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=231.02 Aligned_cols=163 Identities=22% Similarity=0.296 Sum_probs=107.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---C--CceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---P--SSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p--~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++|+++.|++ ++||+|.+||++||+|+||||||||+++|+|. .. | ++|+|.++|+++.......
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl--~~~~~~~~~~G~i~~~g~~i~~~~~~~- 83 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI--SELEGPVKVEGVVDFFGQNIYDPRINI- 83 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--cCcccCCccceEEEECCEeccccccch-
Confidence 4889999999974 89999999999999999999999999999994 33 2 4899999998764211000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. .....+.+..+...+ . . .+ ..+++.................
T Consensus 84 ~----~~~~~i~~v~q~~~l---~-~-~t-----------------------------v~enl~~~~~~~~~~~~~~~~~ 125 (259)
T PRK14260 84 N----RLRRQIGMVFQRPNP---F-P-MS-----------------------------IYENVAYGVRISAKLPQADLDE 125 (259)
T ss_pred H----hhhhheEEEeccccc---C-C-cc-----------------------------HHHHHHHHHHHhcCCCHHHHHH
Confidence 0 000001111100000 0 0 00 1111111000000011122344
Q ss_pred HHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 126 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 182 (259)
T PRK14260 126 IVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 (259)
T ss_pred HHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 577788888874 234678899999999999999999999999999999999998
No 219
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-31 Score=235.46 Aligned_cols=166 Identities=25% Similarity=0.317 Sum_probs=109.4
Q ss_pred ceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc-c--CCceeEEEeccccccCchhHH
Q psy2689 57 SVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA-I--PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~-~--p~~g~i~~~~~~i~~~~~~~~ 128 (262)
...|.++|++++|++ |+||+|.+|++++|+||||||||||+++|+|..-. . |++|+|.++|+++........
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 346899999999975 89999999999999999999999999999984211 2 489999999987642110000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAE 207 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 207 (262)
.....+.+..+...+ . .. + ..+++.... ...... .....
T Consensus 117 -----~~~~~i~~v~q~~~l---~-~~-t-----------------------------v~enl~~~~-~~~~~~~~~~~~ 156 (286)
T PRK14275 117 -----LLRKKIGMVFQKPNP---F-PK-S-----------------------------IFDNIAYGP-RLHGINDKKQLE 156 (286)
T ss_pred -----HhhhcEEEECCCCCC---C-cc-C-----------------------------HHHHHHhHH-HhcCCCcHHHHH
Confidence 000001111000000 0 00 0 111111100 111111 11233
Q ss_pred HHHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD 214 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 4567788888873 234577899999999999999999999999999999999998
No 220
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=234.88 Aligned_cols=161 Identities=24% Similarity=0.314 Sum_probs=108.7
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|++++|+ + ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++... .
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~----~---- 75 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG--FVRLASGKISILGQPTRQA----L---- 75 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEhHHh----h----
Confidence 488999999994 2 8999999999999999999999999999998 6789999999999875210 0
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHH--HhcCChhcHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE--LKSIEADAAEPRA 210 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~ 210 (262)
....+.+..+...+. ........+.+. +. .+.. ...........++
T Consensus 76 --~~~~i~~v~q~~~~~--~~~~~~~~~~i~---------------------------~~-~~~~~~~~~~~~~~~~~~~ 123 (272)
T PRK15056 76 --QKNLVAYVPQSEEVD--WSFPVLVEDVVM---------------------------MG-RYGHMGWLRRAKKRDRQIV 123 (272)
T ss_pred --ccceEEEeccccccc--cCCCcchhhhee---------------------------cc-cccccccccCCCHHHHHHH
Confidence 000011111000000 000000000000 00 0000 0000111234457
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 124 ~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD 174 (272)
T PRK15056 124 TAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174 (272)
T ss_pred HHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 7889999997 45688899999999999999999999999999999999998
No 221
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=2.2e-31 Score=229.61 Aligned_cols=156 Identities=29% Similarity=0.402 Sum_probs=108.5
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|.++..... .
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--~~~~~~G~i~i~g~~~~~~~~--~------- 70 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG--LEQPDSGRIRLNGQDATRVHA--R------- 70 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEEcCcCCh--h-------
Confidence 56788888764 8899999999999999999999999999998 578999999999987643211 0
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
...+.+..+...+ . ...+ ..+++.... .............+.++++
T Consensus 71 ~~~i~~~~q~~~~---~-~~~t-----------------------------~~enl~~~~-~~~~~~~~~~~~~~~~~l~ 116 (237)
T TIGR00968 71 DRKIGFVFQHYAL---F-KHLT-----------------------------VRDNIAFGL-EIRKHPKAKIKARVEELLE 116 (237)
T ss_pred hcCEEEEecChhh---c-cCCc-----------------------------HHHHHHhHH-HhcCCCHHHHHHHHHHHHH
Confidence 0001111100000 0 0000 011111000 0111112223456788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++. ...++.+.+||+||+||++|||||+.+|++|||||||++||
T Consensus 117 ~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 117 LVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99996 56788899999999999999999999999999999999998
No 222
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.3e-31 Score=255.60 Aligned_cols=146 Identities=33% Similarity=0.491 Sum_probs=108.1
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc-ccccCchhHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ-EVEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~-~i~~~~~~~~~~~ 131 (262)
..|.++|+++.|++ ++||+|.+|+++||+|||||||||||++|+| +..|++|+|.+++. .+....
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~~~igy~~------- 381 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG--ELAPVSGEIGLAKGIKLGYFA------- 381 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCeEEECCCEEEEEec-------
Confidence 35899999999975 8999999999999999999999999999998 56899999988532 221110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+... ..+ . ...+ .... +..........++.
T Consensus 382 -----Q~~~-----~~l---~-~~~~-----------------------------~~~~-------~~~~~~~~~~~~~~ 411 (638)
T PRK10636 382 -----QHQL-----EFL---R-ADES-----------------------------PLQH-------LARLAPQELEQKLR 411 (638)
T ss_pred -----Ccch-----hhC---C-ccch-----------------------------HHHH-------HHHhCchhhHHHHH
Confidence 0000 000 0 0000 0000 00001112345688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++|..++|.....++++++|||||||||+|||||+.+|+||||||||||||
T Consensus 412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999999997556788999999999999999999999999999999999998
No 223
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=232.17 Aligned_cols=165 Identities=25% Similarity=0.331 Sum_probs=109.7
Q ss_pred ceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc----CCceeEEEeccccccCchhH
Q psy2689 57 SVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI----PSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~----p~~g~i~~~~~~i~~~~~~~ 127 (262)
...|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+|. +.. |.+|+|.++|.++.......
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl-~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM-NDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc-CCCccCCCCceEEEECCEECcccccCH
Confidence 346899999999975 89999999999999999999999999999994 222 57999999998874211000
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAA 206 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 206 (262)
. .....+.+..+...+ . .. + ..+++.... ..... .....
T Consensus 102 ~-----~~~~~i~~v~q~~~l---~-~~-t-----------------------------v~enl~~~~-~~~~~~~~~~~ 141 (272)
T PRK14236 102 A-----ELRRRVGMVFQRPNP---F-PK-S-----------------------------IYENVVYGL-RLQGINNRRVL 141 (272)
T ss_pred H-----HHhccEEEEecCCcc---C-cc-c-----------------------------HHHHHHHHH-HhcCCCcHHHH
Confidence 0 000001111000000 0 00 0 111111000 01111 11122
Q ss_pred HHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 142 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD 200 (272)
T PRK14236 142 DEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200 (272)
T ss_pred HHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 345777888888853 24567889999999999999999999999999999999998
No 224
>KOG0057|consensus
Probab=99.97 E-value=1.1e-31 Score=246.90 Aligned_cols=160 Identities=28% Similarity=0.382 Sum_probs=118.6
Q ss_pred EEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|+++||+++|+. ++||+|++||.+||||+|||||||++|+|.+ +.. .+|+|+++|+++...+...++..++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr--F~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR--FFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH--Hhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 999999999986 8999999999999999999999999999998 666 9999999999998877776665555
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...|...++. ++...|+.+..... . ..++.+.++ ...+++.
T Consensus 429 ~VPQd~~LFn-----------dTIl~NI~YGn~sa------------------s---~eeV~e~~k-------~a~~hd~ 469 (591)
T KOG0057|consen 429 VVPQDSVLFN-----------DTILYNIKYGNPSA------------------S---DEEVVEACK-------RAGLHDV 469 (591)
T ss_pred EeCCcccccc-----------hhHHHHhhcCCCCc------------------C---HHHHHHHHH-------HcCcHHH
Confidence 5544433332 22223333321100 0 011122121 1235556
Q ss_pred HHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+ |+.+...++ ...|||||||||+||||++++|+|+++|||||+||
T Consensus 470 i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 470 ISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519 (591)
T ss_pred HHhccccchhhHhhc-ccccccchHHHHHHHHHHhcCCCeEEecCcccccc
Confidence 6666 776666666 56799999999999999999999999999999998
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-31 Score=229.71 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=108.4
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|.++|+++.|++ ++||+|.+||+++|+||||||||||+++|+|...+. |.+|+|.++|.++.........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~- 82 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE- 82 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH-
Confidence 5789999999864 899999999999999999999999999999932111 3789999999887432110000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 209 (262)
....+.+..+...+ .. .+ ..+++... ...... .......+
T Consensus 83 ----~~~~i~~~~q~~~~----~~-~t-----------------------------v~enl~~~-~~~~~~~~~~~~~~~ 123 (251)
T PRK14270 83 ----LRKRVGMVFQKPNP----FP-MS-----------------------------IYDNVAYG-PRIHGIKDKKELDKI 123 (251)
T ss_pred ----HHhheEEEecCCCc----CC-Cc-----------------------------HHHHHHhH-HHhcCCCcHHHHHHH
Confidence 00011111100000 00 00 11111100 001111 11223445
Q ss_pred HHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14270 124 VEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179 (251)
T ss_pred HHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 778888888742 34577899999999999999999999999999999999998
No 226
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=9.8e-32 Score=231.66 Aligned_cols=146 Identities=27% Similarity=0.344 Sum_probs=98.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHH-HhhHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLK-ECSKLEQ 150 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 150 (262)
++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++..... .. ...+.+.. +...+
T Consensus 39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G--l~~p~~G~i~~~g~~~~~~~~-~~-------~~~i~~~~~~~~~~-- 106 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSG--LLQPTSGEVRVAGLVPWKRRK-KF-------LRRIGVVFGQKTQL-- 106 (236)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CcCCCceEEEECCEEccccch-hh-------cccEEEEcCCcccc--
Confidence 7888999999999999999999999999998 678999999999876422100 00 00000000 00000
Q ss_pred hhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 151 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 151 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
....+ ..+++.. ...+...........+..+++.+|+. ...++++.+
T Consensus 107 --~~~~t-----------------------------v~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~ 153 (236)
T cd03267 107 --WWDLP-----------------------------VIDSFYL-LAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQ 153 (236)
T ss_pred --CCCCc-----------------------------HHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhh
Confidence 00000 1111111 01111122223344677889999997 456788999
Q ss_pred CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||||||||++|||||+.+|++|||||||++||
T Consensus 154 LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99999999999999999999999999999998
No 227
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-31 Score=229.78 Aligned_cols=160 Identities=27% Similarity=0.401 Sum_probs=101.3
Q ss_pred EEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 61 KVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 61 ~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++|++++|++ ++||++.+|++++|+||||||||||+++|+| +..|++|+|.++|.++...+.....
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~---- 75 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPR--FYDVDSGRILIDGHDVRDYTLASLR---- 75 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc--cccCCCCEEEECCEEhhhCCHHHHH----
Confidence 46777777742 7889999999999999999999999999998 6789999999999876432211110
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+..+...+ . ......|+.+... .. ....+ ... .....+.++
T Consensus 76 ---~~i~~~~q~~~~---~-~~tv~enl~~~~~----------------~~--~~~~~---~~~-------~~~~~~~~~ 120 (234)
T cd03251 76 ---RQIGLVSQDVFL---F-NDTVAENIAYGRP----------------GA--TREEV---EEA-------ARAANAHEF 120 (234)
T ss_pred ---hhEEEeCCCCee---c-cccHHHHhhccCC----------------CC--CHHHH---HHH-------HHHcCcHHH
Confidence 001111110000 0 0001111111000 00 00000 000 011124455
Q ss_pred HHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+ ++.. ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 121 ~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 170 (234)
T cd03251 121 IMELPEGYDT-VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD 170 (234)
T ss_pred HHhcccCcce-eeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 6665 6653 4567789999999999999999999999999999999998
No 228
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-31 Score=231.69 Aligned_cols=166 Identities=23% Similarity=0.299 Sum_probs=107.4
Q ss_pred CceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchhH
Q psy2689 56 NSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 56 ~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~~ 127 (262)
...+|.++|+++.|++ ++||+|.+||+++|+||||||||||+++|+|..-+. |.+|+|.++|+++.......
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 3457999999999975 899999999999999999999999999999842112 25899999998764211000
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
.. ....+.+..+...+ . .. + ..+++.... ...... ...+
T Consensus 97 ~~-----~~~~i~~v~q~~~l---~-~~-t-----------------------------v~~nl~~~~-~~~~~~-~~~~ 135 (274)
T PRK14265 97 VK-----LRRQVGMVFQRPNP---F-PK-S-----------------------------IYENIAFAP-RANGYK-GNLD 135 (274)
T ss_pred HH-----HhhcEEEEccCCcc---c-cc-c-----------------------------HHHHHHhHH-HhcCch-HHHH
Confidence 00 00001111100000 0 00 0 011111000 000000 1122
Q ss_pred HHHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD 193 (274)
T PRK14265 136 ELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193 (274)
T ss_pred HHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 3456667777763 234578899999999999999999999999999999999998
No 229
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=2e-31 Score=262.51 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=113.4
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|++ |+||+|++|+++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g--l~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG--LYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 5899999999963 8999999999999999999999999999998 789999999999999877665554443
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ ..+..+|+.+..... ..+.+ ...+ ....+.
T Consensus 555 i~~v~Q~~~lf-----------~gTi~eNi~l~~~~~------------------~~~~i---~~al-------~~~~l~ 595 (710)
T TIGR03796 555 VAMVDQDIFLF-----------EGTVRDNLTLWDPTI------------------PDADL---VRAC-------KDAAIH 595 (710)
T ss_pred eeEEecCChhh-----------hccHHHHhhCCCCCC------------------CHHHH---HHHH-------HHhCCH
Confidence 33333322222 122233443321000 00000 1101 111233
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |+++...++ ...||||||||++|||||+.+|++||||||||+||
T Consensus 596 ~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD 647 (710)
T TIGR03796 596 DVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALD 647 (710)
T ss_pred HHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCC
Confidence 444444 666544444 56799999999999999999999999999999999
No 230
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=2.3e-31 Score=231.38 Aligned_cols=143 Identities=29% Similarity=0.383 Sum_probs=104.6
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~~ 132 (262)
+|+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.+++.. +..
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G--l~~p~~G~i~~~~~~~i~~---------- 71 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG--LVAPDEGVIKRNGKLRIGY---------- 71 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCccCEEE----------
Confidence 4889999999975 8999999999999999999999999999998 678999999987531 111
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+...+. .... ..+. ..+. ........++.+
T Consensus 72 --v~q~~~~~-----------~~l~-------------------------------~~~~---~~~~-~~~~~~~~~~~~ 103 (251)
T PRK09544 72 --VPQKLYLD-----------TTLP-------------------------------LTVN---RFLR-LRPGTKKEDILP 103 (251)
T ss_pred --eccccccc-----------cccC-------------------------------hhHH---HHHh-ccccccHHHHHH
Confidence 00000000 0000 0000 0000 000112345778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 104 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 152 (251)
T PRK09544 104 ALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152 (251)
T ss_pred HHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 89999997 45678899999999999999999999999999999999998
No 231
>KOG0055|consensus
Probab=99.97 E-value=2.4e-31 Score=264.16 Aligned_cols=167 Identities=27% Similarity=0.383 Sum_probs=121.0
Q ss_pred CCCceeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch
Q psy2689 54 DDNSVDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD 125 (262)
Q Consensus 54 ~~~~~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~ 125 (262)
....-.|+++||+|+|+. ++||+|++|+.++|||||||||||++++|.+ ++.|++|+|+++|.++...+.
T Consensus 345 ~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R--fydP~~G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 345 SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR--FYDPTSGEVLIDGEDIRNLNL 422 (1228)
T ss_pred cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCceEEEcCccchhcch
Confidence 344567999999999975 7999999999999999999999999999998 899999999999999987776
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
..++..+....| +..+ ......+|+.+...... .+.+ .+ ..
T Consensus 423 ~~lr~~iglV~Q-------ePvl----F~~tI~eNI~~G~~dat------------------~~~i---~~-------a~ 463 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQ-------EPVL----FATTIRENIRYGKPDAT------------------REEI---EE-------AA 463 (1228)
T ss_pred HHHHhhcCeeee-------chhh----hcccHHHHHhcCCCccc------------------HHHH---HH-------HH
Confidence 655443333332 2222 12334456555431110 0000 00 01
Q ss_pred HHHHHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.+.+.+..+ |+++...++.+ +|||||||||||||||+.+|+|||||||||+||
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD 521 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALD 521 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccC
Confidence 122344444443 66666666655 599999999999999999999999999999999
No 232
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=6e-31 Score=251.14 Aligned_cols=168 Identities=26% Similarity=0.341 Sum_probs=110.7
Q ss_pred eEEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccccccCc
Q psy2689 59 DIKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQEVEASD 124 (262)
Q Consensus 59 ~i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~i~~~~ 124 (262)
+|+++|++++|+ . ++||+|.+||++||+||||||||||+++|+|. ..| ++|+|.++|+++...+
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL--LPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCcCCccceEEEECCEecccCC
Confidence 488899999884 1 89999999999999999999999999999983 343 7999999999875432
Q ss_pred hhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh
Q psy2689 125 DSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204 (262)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (262)
........ ...+.+..|..... + ....+ ..+++.............
T Consensus 83 ~~~~~~~~---~~~ig~v~Q~~~~~-~-~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 128 (529)
T PRK15134 83 EQTLRGVR---GNKIAMIFQEPMVS-L-NPLHT-----------------------------LEKQLYEVLSLHRGMRRE 128 (529)
T ss_pred HHHHHHHh---cCceEEEecCchhh-c-Cchhh-----------------------------HHHHHHHHHHHhcCCCHH
Confidence 21100000 00011111100000 0 00000 001111000000112223
Q ss_pred cHHHHHHHHHHhCCCCh--hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~--~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 129 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD 188 (529)
T PRK15134 129 AARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188 (529)
T ss_pred HHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence 34567889999999964 13578899999999999999999999999999999999998
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-31 Score=229.97 Aligned_cols=164 Identities=24% Similarity=0.343 Sum_probs=107.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++|+++.|++ |+||+|.+|++++|+||||||||||+++|+|..-+.| ++|+|.++|+++.........
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~- 84 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA- 84 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh-
Confidence 5889999999975 8999999999999999999999999999998421223 489999999887432100000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 209 (262)
..+.+.+..+...+ . .. + ..+++.... ..... .....+..
T Consensus 85 ----~~~~i~~~~q~~~~---~-~~-t-----------------------------v~eni~~~~-~~~~~~~~~~~~~~ 125 (253)
T PRK14261 85 ----LRRKIGMVFQRPNP---F-PK-S-----------------------------IYENVAYGP-RIHGEKNKKTLDTI 125 (253)
T ss_pred ----hhceEEEEecCCcc---C-cc-c-----------------------------HHHHHHhhH-HhcCCCCHHHHHHH
Confidence 00001111100000 0 00 0 111111000 01111 11123445
Q ss_pred HHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 126 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD 181 (253)
T PRK14261 126 VEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181 (253)
T ss_pred HHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 777788887742 23568899999999999999999999999999999999998
No 234
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-31 Score=229.70 Aligned_cols=162 Identities=21% Similarity=0.283 Sum_probs=106.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC-----ceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-----SIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~-----~g~i~~~~~~i~~~~~~~~ 128 (262)
.|.++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|. +|+|.++|.++........
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G--l~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNR--MNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhc--ccCccccCCcccEEEECCEEccccccChH
Confidence 4788999999874 8999999999999999999999999999998 45565 6999999987642111000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAE 207 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 207 (262)
...+.+.+..+...+ . +. + ..+++.... ...... .....
T Consensus 82 -----~~~~~i~~v~q~~~~---~-~~-t-----------------------------v~enl~~~~-~~~~~~~~~~~~ 121 (251)
T PRK14249 82 -----NLRKRVGMVFQQPNP---F-PK-S-----------------------------IFDNVAFGP-RMLGTTAQSRLD 121 (251)
T ss_pred -----HhhceEEEEecCCcc---C-cC-c-----------------------------HHHHHhhHH-HhcCCChhhHHH
Confidence 000001111110000 0 00 0 111111000 011111 11223
Q ss_pred HHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+..+++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 179 (251)
T PRK14249 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179 (251)
T ss_pred HHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 44666777777642 34578899999999999999999999999999999999998
No 235
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=4.6e-31 Score=227.47 Aligned_cols=160 Identities=24% Similarity=0.376 Sum_probs=98.0
Q ss_pred EEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 61 KVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 61 ~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|.++...+......
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~~~-- 77 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLER--FYDPTSGEILLDGVDIRDLNLRWLRS-- 77 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhc--cCCCCCCEEEECCEehhhcCHHHHHh--
Confidence 46777777741 7889999999999999999999999999998 67899999999998764322111100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
.+.+..+...+. ......|+.+.. ... ....+ ...+ ....+.+
T Consensus 78 -----~i~~~~q~~~~~----~~tv~e~l~~~~----------------~~~--~~~~~---~~~~-------~~~~~~~ 120 (238)
T cd03249 78 -----QIGLVSQEPVLF----DGTIAENIRYGK----------------PDA--TDEEV---EEAA-------KKANIHD 120 (238)
T ss_pred -----hEEEECCchhhh----hhhHHHHhhccC----------------CCC--CHHHH---HHHH-------HHcChHH
Confidence 011111000000 000001111000 000 00000 0000 0001233
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+ ++.. ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 ~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD 171 (238)
T cd03249 121 FIMSLPDGYDT-LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171 (238)
T ss_pred HHHhhccccce-eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 34444 4442 3456789999999999999999999999999999999998
No 236
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=230.93 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=106.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc------ccccCchhH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ------EVEASDDSA 127 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~------~i~~~~~~~ 127 (262)
.|.++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|. ++.......
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG--~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNR--LIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4889999999976 8999999999999999999999999999998 67888877666553 321111000
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
. ...+.+..+... +++..+ ..+++................
T Consensus 88 ~-------~~~i~~~~q~~~------------------------~~~~~t---------v~~nl~~~~~~~~~~~~~~~~ 127 (257)
T PRK14246 88 L-------RKEVGMVFQQPN------------------------PFPHLS---------IYDNIAYPLKSHGIKEKREIK 127 (257)
T ss_pred H-------hcceEEEccCCc------------------------cCCCCc---------HHHHHHHHHHhcCCCCHHHHH
Confidence 0 000111110000 000000 111111110000001112234
Q ss_pred HHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+++.. ...++.+..||+|||||++|||||+.+|++|||||||++||
T Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD 185 (257)
T PRK14246 128 KIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185 (257)
T ss_pred HHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 56788899999852 34567889999999999999999999999999999999998
No 237
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.4e-31 Score=230.18 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=106.5
Q ss_pred ceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchhHH
Q psy2689 57 SVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~~~ 128 (262)
..+|+++|++++|+. ++||+|.+|+++||+||||||||||+++|+|..-+. |++|+|.++|.++........
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 346899999999975 899999999999999999999999999999831111 479999999987632110000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. ....+.+..+...+ . .. + ..+++.... ...... .....
T Consensus 88 ~-----~~~~i~~v~q~~~~---~-~~-t-----------------------------v~enl~~~~-~~~~~~-~~~~~ 126 (264)
T PRK14243 88 E-----VRRRIGMVFQKPNP---F-PK-S-----------------------------IYDNIAYGA-RINGYK-GDMDE 126 (264)
T ss_pred H-----HhhhEEEEccCCcc---c-cc-c-----------------------------HHHHHHhhh-hhcCcc-hHHHH
Confidence 0 00001111100000 0 00 0 111111000 000011 11234
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 127 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 127 LVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred HHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 4566677777632 23567889999999999999999999999999999999998
No 238
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=231.79 Aligned_cols=163 Identities=23% Similarity=0.323 Sum_probs=106.1
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-----CCceeEEEeccccccCchhH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-----PSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-----p~~g~i~~~~~~i~~~~~~~ 127 (262)
.+++++|+++.|++ ++||+|.+|+++||+|+||||||||+++|+|. .. |++|+|.++|.++.......
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM--VELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--ccCCCCCCCceeEEECCEEcccccccH
Confidence 36899999999974 89999999999999999999999999999994 33 68999999998764211000
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAA 206 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 206 (262)
. . ....+.+..+...+ . .. + ..+++.... ..... .....
T Consensus 101 ~-~----~~~~i~~v~q~~~~---~-~~-t-----------------------------v~eni~~~~-~~~~~~~~~~~ 140 (271)
T PRK14238 101 E-E----LRTNVGMVFQKPNP---F-PK-S-----------------------------IYDNVTYGP-KIHGIKDKKTL 140 (271)
T ss_pred H-H----HhhhEEEEecCCcc---c-cc-c-----------------------------HHHHHHHHH-HhcCCCcHHHH
Confidence 0 0 00001111100000 0 00 0 111111000 01111 11112
Q ss_pred HHHHHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 141 ~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD 199 (271)
T PRK14238 141 DEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199 (271)
T ss_pred HHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 34456667666432 134577899999999999999999999999999999999998
No 239
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-31 Score=228.90 Aligned_cols=164 Identities=24% Similarity=0.296 Sum_probs=106.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++|+++.|+. ++||+|.+|+++||+||||||||||+++|+|..-..| ++|+|.++|+++...+.....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~- 83 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ- 83 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH-
Confidence 5889999999975 8999999999999999999999999999998421224 589999999877421110000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 209 (262)
....+.+..+...+ . . .+ ..+++.... ...... .......
T Consensus 84 ----~~~~i~~~~q~~~~---~-~-~t-----------------------------v~~nl~~~~-~~~~~~~~~~~~~~ 124 (252)
T PRK14255 84 ----LRKQVGMVFQQPNP---F-P-FS-----------------------------IYENVIYGL-RLAGVKDKAVLDEA 124 (252)
T ss_pred ----hcCeEEEEECCCcc---C-C-Cc-----------------------------HHHHHHHHH-HHcCCCCHHHHHHH
Confidence 00001111000000 0 0 00 111111100 011111 1112345
Q ss_pred HHHHHHhCCCC---hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFT---KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~---~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+.++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 125 ~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14255 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180 (252)
T ss_pred HHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 66677777763 134577899999999999999999999999999999999998
No 240
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.6e-31 Score=229.73 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=107.5
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC-----ceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-----SIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~-----~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++|+++.|++ |+||+|.+|+++||+||||||||||+++|+| +..|+ +|+|.++|+++........
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G--l~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR--MNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhc--ccCCCCCccccceEEECCEEhhccccchH
Confidence 4889999999964 8999999999999999999999999999998 44554 7999999987632110000
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC-ChhcHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI-EADAAE 207 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 207 (262)
. ..+.+.+..+...+ . . .+ ..+++.... ..... ......
T Consensus 85 ~-----~~~~i~~~~q~~~l---~-~-~t-----------------------------v~enl~~~~-~~~~~~~~~~~~ 124 (261)
T PRK14258 85 R-----LRRQVSMVHPKPNL---F-P-MS-----------------------------VYDNVAYGV-KIVGWRPKLEID 124 (261)
T ss_pred H-----hhccEEEEecCCcc---C-c-cc-----------------------------HHHHHHHHH-HhcCCCcHHHHH
Confidence 0 00000000000000 0 0 00 111111100 01111 111223
Q ss_pred HHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD 182 (261)
T PRK14258 125 DIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182 (261)
T ss_pred HHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 45778888888742 34678899999999999999999999999999999999998
No 241
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.3e-31 Score=255.65 Aligned_cols=177 Identities=19% Similarity=0.249 Sum_probs=113.1
Q ss_pred eEEEeeeeEeeC----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPC----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
+|+++|+++.|+ . ++||+|.+|+++|||||||||||||+++|+| +..|++|+|.++|..+...+...+.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~G--ll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR--LLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHc--CCCCCCeEEEECCEEeccccccccc
Confidence 589999999995 1 8999999999999999999999999999998 5678999999988755211100000
Q ss_pred HHHhhhHHHHHHHH-HhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 130 IVLSADKNRVKLLK-ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
..-........+.. ....+.+ .... .+.+..+ ..+++.................
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q---~~~~-------------~l~~~~t---------v~e~l~~~~~~~~~~~~~~~~~ 144 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQ---EPMT-------------SLNPVFT---------VGEQIAESIRLHQGASREEAMV 144 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEe---Cchh-------------hcCCCCC---------HHHHHHHHHHHhcCCCHHHHHH
Confidence 00000000000000 0010000 0000 0000000 1122221111111223334456
Q ss_pred HHHHHHHhCCCCh--hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~--~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++|+.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 145 ~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD 200 (623)
T PRK10261 145 EAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200 (623)
T ss_pred HHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccC
Confidence 7889999999963 35688899999999999999999999999999999999998
No 242
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=246.87 Aligned_cols=177 Identities=26% Similarity=0.450 Sum_probs=109.9
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHHHh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~~~ 133 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.+++.. +....
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G--l~~p~~G~i~~~~~~~i~~~~--------- 70 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG--DLEPSAGNVSLDPNERLGKLR--------- 70 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEecCCCEEEEEe---------
Confidence 788999999975 8999999999999999999999999999998 668899999987632 21100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhh-hh-HHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADK-NR-VKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
+...++ ...+ ..++.+.... .. ........... .........+......+........+.++
T Consensus 71 ---q~~~~~-----------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (530)
T PRK15064 71 ---QDQFAF-----------EEFTVLDTVIMGHTELWEVKQERDRIYALP-EMSEEDGMKVADLEVKFAEMDGYTAEARA 135 (530)
T ss_pred ---ccCCcC-----------CCCcHHHHHHHhhHHHHHHHHHHHHHhccc-ccccchHHHHHHHHHHHHhcCchhHHHHH
Confidence 000000 0000 0011000000 00 00000000000 00000011111112222222223345678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 136 ~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD 187 (530)
T PRK15064 136 GELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187 (530)
T ss_pred HHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 8999999997544457889999999999999999999999999999999998
No 243
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-31 Score=252.43 Aligned_cols=162 Identities=24% Similarity=0.286 Sum_probs=112.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++........ .
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~I~~~g~~i~~~~~~~~---~- 77 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSG--NYQPDAGSILIDGQEMRFASTTAA---L- 77 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCCEEEECCEECCCCCHHHH---H-
Confidence 5889999999975 8999999999999999999999999999998 678999999999988743211100 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc-CChhcHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS-IEADAAEPRAR 211 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~ 211 (262)
...+.+..+...+ ....+ ..|+.+.. ...... ........++.
T Consensus 78 --~~~i~~v~q~~~~----~~~~tv~~~l~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 122 (501)
T PRK11288 78 --AAGVAIIYQELHL----VPEMTVAENLYLGQ-----------------------------LPHKGGIVNRRLLNYEAR 122 (501)
T ss_pred --hCCEEEEEechhc----cCCCCHHHHHHhcc-----------------------------cccccCCCCHHHHHHHHH
Confidence 0001111100000 00111 11111100 000000 11223345688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 123 ~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 172 (501)
T PRK11288 123 EQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS 172 (501)
T ss_pred HHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 899999997 44678899999999999999999999999999999999998
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=2.6e-31 Score=252.03 Aligned_cols=161 Identities=20% Similarity=0.323 Sum_probs=109.2
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC--CceeEEEeccccccCchhHHHHHH
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP--SSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p--~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..| ++|+|.++|+++...+....
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G--~~~~~~~~G~i~~~g~~~~~~~~~~~---- 75 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG--VYPHGTWDGEIYWSGSPLKASNIRDT---- 75 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCCCeEEEECCEECCCCCHHHH----
Confidence 678999999875 8999999999999999999999999999998 4444 79999999988753221100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh----cCChhcHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK----SIEADAAEP 208 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~ 208 (262)
....+.+..+...+ ....+ ..+++.... .+. .........
T Consensus 76 --~~~~i~~v~q~~~~----~~~~t-----------------------------v~~~l~~~~-~~~~~~~~~~~~~~~~ 119 (500)
T TIGR02633 76 --ERAGIVIIHQELTL----VPELS-----------------------------VAENIFLGN-EITLPGGRMAYNAMYL 119 (500)
T ss_pred --HhCCEEEEeecccc----CCCCc-----------------------------HHHHHHhhc-cccccccccCHHHHHH
Confidence 00001111110000 00011 011111000 000 011122345
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred HHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 688899999997433457799999999999999999999999999999999998
No 245
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=4.5e-31 Score=254.20 Aligned_cols=153 Identities=31% Similarity=0.463 Sum_probs=109.9
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|++ |+||+|++|+++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g--~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR--AWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 5999999999942 8999999999999999999999999999998 789999999999999876665544333
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ .....+|+.+.. .+..++++.
T Consensus 416 i~~v~Q~~~lf-----------~~ti~~Ni~~~~-------------------------------------~~~~~~~i~ 447 (574)
T PRK11160 416 ISVVSQRVHLF-----------SATLRDNLLLAA-------------------------------------PNASDEALI 447 (574)
T ss_pred eeEEcccchhh-----------cccHHHHhhcCC-------------------------------------CccCHHHHH
Confidence 33222222111 112223332211 011222344
Q ss_pred HHHHhCCC----------ChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGF----------TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl----------~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++.+++ ++...+ ....||||||||++|||||+++|++|||||||++||
T Consensus 448 ~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD 507 (574)
T PRK11160 448 EVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507 (574)
T ss_pred HHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 44444444 332222 356799999999999999999999999999999998
No 246
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=1.8e-31 Score=256.75 Aligned_cols=162 Identities=29% Similarity=0.427 Sum_probs=119.9
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|+++.|++ |+||++++||++|||||||||||||+++|+| ++.|++|+|.+||+++...+...++..+
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r--~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR--LYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 4999999999972 8999999999999999999999999999998 8999999999999999877766655444
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|...++ ..+...|+.+..... +. + ++.+. ...+.+.+
T Consensus 406 ~~V~Qd~~LF-----------~~TI~~NI~~g~~~a---------------t~---e---ei~~a-------~k~a~~~d 446 (567)
T COG1132 406 GIVSQDPLLF-----------SGTIRENIALGRPDA---------------TD---E---EIEEA-------LKLANAHE 446 (567)
T ss_pred cEEcccceee-----------cccHHHHHhcCCCCC---------------CH---H---HHHHH-------HHHhChHH
Confidence 4333322222 233345555442110 00 0 01111 11224566
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..+ |+++...++ ...||||||||++||||++.+|++||||||||+||
T Consensus 447 ~I~~lp~g~dt~vge~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD 497 (567)
T COG1132 447 FIANLPDGYDTIVGER-GVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497 (567)
T ss_pred HHHhCcccccceecCC-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccC
Confidence 66666 787665544 56799999999999999999999999999999998
No 247
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=255.56 Aligned_cols=163 Identities=23% Similarity=0.334 Sum_probs=109.6
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|++ |+||+|++|+++||+||||||||||+++|+| ++.|++|+|.++|+++...+...++..
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g--l~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR--FYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHh--ccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 4899999999953 8999999999999999999999999999998 789999999999999876554433322
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+... +|...+. +.+..+|+.+..... . ..+.+ ...+. ...+.
T Consensus 419 i~~v-------~Q~~~lf----~~Ti~~Ni~~~~~~~--------------~---~~~~i---~~al~-------~~~l~ 460 (582)
T PRK11176 419 VALV-------SQNVHLF----NDTIANNIAYARTEQ--------------Y---SREQI---EEAAR-------MAYAM 460 (582)
T ss_pred ceEE-------ccCceee----cchHHHHHhcCCCCC--------------C---CHHHH---HHHHH-------HhCcH
Confidence 2222 2211110 122234443321000 0 00000 00011 11123
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+ |+++...+. ...||||||||++|||||+++|++|||||||++||
T Consensus 461 ~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 461 DFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred HHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 333333 555444333 46799999999999999999999999999999999
No 248
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.6e-31 Score=226.58 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=99.7
Q ss_pred EEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 61 KVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 61 ~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
+++|++++|+ + ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++...+.......
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--l~~~~~G~v~~~g~~~~~~~~~~~~~~--- 76 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFR--FYDVSSGSILIDGQDIREVTLDSLRRA--- 76 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--ccCCCCCEEEECCEEhhhCCHHHHHhh---
Confidence 5678888874 2 7899999999999999999999999999998 678999999999987743222111100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
+.+..+...+ . ......|+.+... .. ....+ ...+ ....+.+.+
T Consensus 77 ----i~~~~q~~~~---~-~~tv~~nl~~~~~----------------~~--~~~~~---~~~~-------~~~~l~~~~ 120 (236)
T cd03253 77 ----IGVVPQDTVL---F-NDTIGYNIRYGRP----------------DA--TDEEV---IEAA-------KAAQIHDKI 120 (236)
T ss_pred ----EEEECCCChh---h-cchHHHHHhhcCC----------------CC--CHHHH---HHHH-------HHcCcHHHH
Confidence 0010000000 0 0000111111000 00 00000 0000 001123344
Q ss_pred HhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+ ++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 ~~l~~~~~~-~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD 169 (236)
T cd03253 121 MRFPDGYDT-IVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD 169 (236)
T ss_pred Hhccccccc-hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 444 4543 3456688999999999999999999999999999999998
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=8.1e-31 Score=247.43 Aligned_cols=145 Identities=40% Similarity=0.505 Sum_probs=108.4
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc-ccccCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ-EVEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~-~i~~~~~~~~~~ 130 (262)
..+.++|+++.|++ ++||.|.+|+++|||||||+|||||||+|+| ...|.+|+|.+... .+...+..
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g--~~~~~~G~v~~g~~v~igyf~Q~---- 393 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKVGETVKIGYFDQH---- 393 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhh--hcccCCceEEeCCceEEEEEEeh----
Confidence 45899999999954 8999999999999999999999999999998 45666887765322 22211100
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
...+. ...+ +.+.+........+..+
T Consensus 394 -------~~~l~-----------~~~t------------------------------------~~d~l~~~~~~~~e~~~ 419 (530)
T COG0488 394 -------RDELD-----------PDKT------------------------------------VLEELSEGFPDGDEQEV 419 (530)
T ss_pred -------hhhcC-----------ccCc------------------------------------HHHHHHhhCccccHHHH
Confidence 00000 0000 11111111111226779
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|..|+|..+...+++..||||||.||.||+.++.+|++|||||||||||
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred HHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 9999999999888899999999999999999999999999999999999999
No 250
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=226.94 Aligned_cols=165 Identities=21% Similarity=0.255 Sum_probs=108.6
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc-c--CCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA-I--PSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~-~--p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.+.++||++.|++ ++||+|.+|++++|+||||||||||+++|+|..-. . |++|+|.++|+++.........
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~- 81 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE- 81 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH-
Confidence 4788999999874 89999999999999999999999999999984211 2 4899999999887421100000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
....+.+..+...+ . ... ..+++...............+.++
T Consensus 82 ----~~~~i~~~~q~~~~---~-~~t------------------------------~~~nl~~~~~~~~~~~~~~~~~~~ 123 (250)
T PRK14266 82 ----LRKKVGMVFQKPNP---F-PKS------------------------------IFDNVAYGLRIHGEDDEDFIEERV 123 (250)
T ss_pred ----HhhheEEEecCCcc---C-cch------------------------------HHHHHHhHHhhcCCCCHHHHHHHH
Confidence 00011111100000 0 000 111111110000001112234567
Q ss_pred HHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD 178 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 78888888742 24578899999999999999999999999999999999998
No 251
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=5.7e-31 Score=234.64 Aligned_cols=171 Identities=27% Similarity=0.435 Sum_probs=124.8
Q ss_pred CCCceeEEEeeeeEeeCC----------------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec
Q psy2689 54 DDNSVDIKVENFSLSPCL----------------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 117 (262)
Q Consensus 54 ~~~~~~i~i~~v~~~~~~----------------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~ 117 (262)
.+....++.+++..+|.. ++||++.+|+.+||||.||||||||-.+|.+ + .++.|+|.|.|
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr--L-~~s~G~I~F~G 347 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR--L-IPSQGEIRFDG 347 (534)
T ss_pred CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh--h-cCcCceEEECC
Confidence 334466888888888731 7999999999999999999999999999997 3 45569999999
Q ss_pred cccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHH
Q psy2689 118 QEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE 197 (262)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (262)
+++...+...+ ++-.+.+.-++++++...|+.++.. ..+.+-..-
T Consensus 348 ~~i~~~~~~~m-------------rplR~~mQvVFQDPygSLsPRmtV~----------------------qII~EGL~v 392 (534)
T COG4172 348 QDIDGLSRKEM-------------RPLRRRMQVVFQDPYGSLSPRMTVG----------------------QIIEEGLRV 392 (534)
T ss_pred ccccccChhhh-------------hhhhhhceEEEeCCCCCCCcccCHH----------------------HHhhhhhhh
Confidence 99976543221 1111222222334443333332211 111111111
Q ss_pred Hh-cCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 198 LK-SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 198 l~-~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+. .....+.++++.+.|..+|++....+|++++||||||||++|||||+.+|.+++||||||+||
T Consensus 393 h~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 393 HEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 12 334556778899999999999888999999999999999999999999999999999999998
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=6.5e-31 Score=224.99 Aligned_cols=157 Identities=27% Similarity=0.347 Sum_probs=101.9
Q ss_pred EEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchhH
Q psy2689 60 IKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 60 i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~~ 127 (262)
+.++|+++.|++ ++||+|.+||+++|+||||||||||+++|+| +.. |++|+|.++|+++.. ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G--~~~~~~~~~G~i~~~g~~~~~---~~ 78 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG--RVEGGGTTSGQILFNGQPRKP---DQ 78 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhC--ccCCCCCCceEEEECCEECCh---HH
Confidence 345666666531 6888999999999999999999999999998 455 899999999987631 00
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH--hcCChhc
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL--KSIEADA 205 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 205 (262)
. ...+.+..+...+ ....+ ..+++....... .......
T Consensus 79 ~-------~~~i~~~~q~~~~----~~~~t-----------------------------v~enl~~~~~~~~~~~~~~~~ 118 (226)
T cd03234 79 F-------QKCVAYVRQDDIL----LPGLT-----------------------------VRETLTYTAILRLPRKSSDAI 118 (226)
T ss_pred h-------cccEEEeCCCCcc----CcCCc-----------------------------HHHHHHHHHHhhcccccchHH
Confidence 0 0011111110000 00001 011111000000 0001111
Q ss_pred HHHHHHH-HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARR-ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~-~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....+.+ +++.+++. ...++.+.+|||||+|||+|||||+.+|++|||||||++||
T Consensus 119 ~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD 175 (226)
T cd03234 119 RKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175 (226)
T ss_pred HHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCC
Confidence 2223445 78889986 45678899999999999999999999999999999999998
No 253
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=4.6e-31 Score=255.05 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=111.0
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|++++|+. |+||+|++|+++||+|+||||||||+++|+| ++.|++|+|.++|.++...+...++..+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g--l~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG--YYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc--ccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 4899999999953 8999999999999999999999999999998 7899999999999998766655443333
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|...++ +.+...|+.+..... .+.+ ...++ ...+.+
T Consensus 418 ~~v~Q~~~lF-----------~~Ti~~NI~~~~~~~-------------------d~~i---~~a~~-------~~gl~~ 457 (592)
T PRK10790 418 AMVQQDPVVL-----------ADTFLANVTLGRDIS-------------------EEQV---WQALE-------TVQLAE 457 (592)
T ss_pred EEEccCCccc-----------cchHHHHHHhCCCCC-------------------HHHH---HHHHH-------HcCcHH
Confidence 3222222111 122233443321000 0000 00010 111333
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+ |+++...+ ....||||||||++|||||+.+|++|||||||++||
T Consensus 458 ~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD 508 (592)
T PRK10790 458 LARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508 (592)
T ss_pred HHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 34443 55544333 356799999999999999999999999999999998
No 254
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-31 Score=244.99 Aligned_cols=167 Identities=26% Similarity=0.362 Sum_probs=112.6
Q ss_pred CCCceeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhH
Q psy2689 54 DDNSVDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 54 ~~~~~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~ 127 (262)
......++++|+++.|++ ++||++++|+.++|||+||||||||+++|+| +..|++|+|.++|++....+...
T Consensus 315 ~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G--~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 315 NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG--FLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred cCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC--cCCCCCceEEECCccccccCHHH
Confidence 334566788899999964 8999999999999999999999999999998 78899999999999987666544
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
++. .+.+..+...+. ..+..+|+.+...... .+.+.++ ...
T Consensus 393 ~~k-------~i~~v~Q~p~lf----~gTireNi~l~~~~~s------------------~e~i~~a----------l~~ 433 (559)
T COG4988 393 WRK-------QISWVSQNPYLF----AGTIRENILLARPDAS------------------DEEIIAA----------LDQ 433 (559)
T ss_pred HHh-------HeeeeCCCCccc----cccHHHHhhccCCcCC------------------HHHHHHH----------HHH
Confidence 432 222222222211 2223344444321100 0000000 011
Q ss_pred HHHHHHHHh-CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAG-LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~-lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.+++.. -|++....+. -..|||||+|||+|||||+.+++++||||||+|||
T Consensus 434 a~l~~~v~~p~GLdt~ige~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 434 AGLLEFVPKPDGLDTVIGEG-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred hcHHHhhcCCCcccchhccC-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 112222322 3554433333 45699999999999999999999999999999999
No 255
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=5.8e-31 Score=251.21 Aligned_cols=162 Identities=27% Similarity=0.373 Sum_probs=109.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|++ |+||+|++|++++|+||||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG--FVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 4899999999953 8999999999999999999999999999998 789999999999999876654433322
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....| ...+ .+.+..+|+.+..... ..+. +...++ ...+.
T Consensus 398 i~~v~Q-------~~~l----f~~ti~~Ni~~~~~~~------------------~~~~---i~~a~~-------~~~l~ 438 (529)
T TIGR02857 398 IAWVPQ-------HPFL----FAGTIAENIRLARPDA------------------SDAE---IRRALE-------RAGLD 438 (529)
T ss_pred eEEEcC-------CCcc----cCcCHHHHHhccCCCC------------------CHHH---HHHHHH-------HcCcH
Confidence 222211 1111 0122233433321000 0000 000010 11233
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+ |+++... .....||||||||++|||||+++|++|||||||++||
T Consensus 439 ~~i~~lp~Gldt~v~-e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD 490 (529)
T TIGR02857 439 EFVAALPQGLDTLIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490 (529)
T ss_pred HHHHhCcccccchhc-cccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 344443 4554433 3456899999999999999999999999999999998
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=4.7e-31 Score=251.39 Aligned_cols=173 Identities=25% Similarity=0.315 Sum_probs=107.5
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCc-ccCCceeEEEecc---------------
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQ--------------- 118 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~-~~p~~g~i~~~~~--------------- 118 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+|. + ..|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM-DQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-ccCCCCceEEEEeccccccccccccccccc
Confidence 357888888865 89999999999999999999999999999983 2 2689999998731
Q ss_pred -ccccCchhH----HHHHHhhhHH-HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHH
Q psy2689 119 -EVEASDDSA----VNIVLSADKN-RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLT 192 (262)
Q Consensus 119 -~i~~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (262)
++...+... .. ....... ...+......+.+ ... .+++.. ...+++.
T Consensus 80 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~q---~~~--------------~~~~~~---------tv~~~l~ 132 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVD-FWNLSDKLRRRIRKRIAIMLQ---RTF--------------ALYGDD---------TVLDNVL 132 (520)
T ss_pred cccccccccccccchh-hhccCHHHHHHhhhcEEEEec---ccc--------------ccCCCC---------CHHHHHH
Confidence 110000000 00 0000000 0000000000000 000 000000 0112221
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 193 EVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.... ...........++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 133 EALE-EIGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred HHHH-HcCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 1111 11122223456788999999997 45688899999999999999999999999999999999998
No 257
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.6e-31 Score=227.33 Aligned_cols=163 Identities=24% Similarity=0.301 Sum_probs=105.4
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc-c--CCceeEEEeccccccCchhHHHHH
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA-I--PSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~-~--p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
-+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|...+ . |.+|+|.++|+++........
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~--- 82 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV--- 82 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH---
Confidence 357788888864 89999999999999999999999999999994211 1 579999999987642211000
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcC--ChhcHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI--EADAAEPR 209 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 209 (262)
.....+.+..+...+ . .. + ..+++... ...... ........
T Consensus 83 --~~~~~i~~v~q~~~~---~-~~-t-----------------------------v~~ni~~~-~~~~~~~~~~~~~~~~ 125 (251)
T PRK14244 83 --LLRAKVGMVFQKPNP---F-PK-S-----------------------------IYDNVAYG-PKLHGLAKNKKKLDEI 125 (251)
T ss_pred --HHhhhEEEEecCccc---c-cC-C-----------------------------HHHHHHHH-HHhcCCCCCHHHHHHH
Confidence 000001111000000 0 00 0 11111100 001111 11123345
Q ss_pred HHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 181 (251)
T PRK14244 126 VEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181 (251)
T ss_pred HHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 778899999853 23467789999999999999999999999999999999998
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=5.9e-31 Score=258.96 Aligned_cols=162 Identities=27% Similarity=0.376 Sum_probs=111.5
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++||+++|++ |+||+|++||+++|+||||||||||+++|+| ++.|++|+|.++|+++...+...++.
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g--l~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN--LYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHh--ccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 4899999999952 8999999999999999999999999999998 78999999999999987665444332
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+. +..|...+. ..+..+|+.+..... ..+.+ ...++ ...+
T Consensus 556 ~i~-------~v~Q~~~lF----~gTIreNI~~g~~~~------------------~~e~i---~~al~-------~a~l 596 (711)
T TIGR00958 556 QVA-------LVGQEPVLF----SGSVRENIAYGLTDT------------------PDEEI---MAAAK-------AANA 596 (711)
T ss_pred hce-------EEecCcccc----ccCHHHHHhcCCCCC------------------CHHHH---HHHHH-------HcCC
Confidence 222 222222111 222334444321100 00000 11111 1123
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++.+ |+++...++ ..+||||||||++|||||+++|+||||||||++||
T Consensus 597 ~~~i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD 649 (711)
T TIGR00958 597 HDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649 (711)
T ss_pred HHHHHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccC
Confidence 3444444 565544333 56799999999999999999999999999999999
No 259
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-31 Score=251.98 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=111.9
Q ss_pred eeEEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 58 VDIKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 58 ~~i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
.+|+++|+++.|.. ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...... .. .
T Consensus 264 ~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~g~~~~~~~~~--~~-~-- 336 (510)
T PRK09700 264 TVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPL--DA-V-- 336 (510)
T ss_pred cEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCcCCCCeEEECCEECCCCCHH--HH-H--
Confidence 36999999998754 9999999999999999999999999999998 6689999999999877432110 00 0
Q ss_pred hHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+..+...-..+ ....+ ..|+.+.... ........+...........+.++
T Consensus 337 -~~~i~~v~q~~~~~~~-~~~~tv~e~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 392 (510)
T PRK09700 337 -KKGMAYITESRRDNGF-FPNFSIAQNMAISRSL----------------------KDGGYKGAMGLFHEVDEQRTAENQ 392 (510)
T ss_pred -HCCcEEccCccccCCC-cCCCcHHHHhcccccc----------------------ccccccccccccChHHHHHHHHHH
Confidence 0001111110000000 00111 1111110000 000000000000111223457889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 393 l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD 441 (510)
T PRK09700 393 RELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441 (510)
T ss_pred HHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcC
Confidence 9999996345788999999999999999999999999999999999998
No 260
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=239.91 Aligned_cols=154 Identities=30% Similarity=0.428 Sum_probs=114.1
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.++++|++|+|.+ |+||++.+||++||+|++|||||||+++|+| ...|++|+|.++|.++...+...+++.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~--~~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh--ccCCCCCeeeECCcChhhCChhhHHHH
Confidence 6899999999976 8999999999999999999999999999998 689999999999999988776655544
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|+..++. .+...|+.+.. .+..++.+.
T Consensus 414 i~vl~Qr~hlF~-----------~Tlr~NL~lA~-------------------------------------~~AsDEel~ 445 (573)
T COG4987 414 ISVLTQRVHLFS-----------GTLRDNLRLAN-------------------------------------PDASDEELW 445 (573)
T ss_pred HhhhccchHHHH-----------HHHHHHHhhcC-------------------------------------CCCCHHHHH
Confidence 444444433332 11112222211 112233344
Q ss_pred HHHHhCCCChhh----------hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEM----------QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~----------~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+.+.. .+..-..||||||||++|||+|+++.+++||||||.|||
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD 506 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLD 506 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCC
Confidence 445555443221 122356799999999999999999999999999999999
No 261
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.3e-31 Score=250.90 Aligned_cols=166 Identities=20% Similarity=0.283 Sum_probs=111.2
Q ss_pred eEEEeeeeEeeC---C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-CCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPC---L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-PSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~---~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
+|+++|+++.|+ + ++||+|.+|+++||+||||||||||+|+|+| +.. |++|+|.++|+++.......
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~~~~~G~i~~~g~~~~~~~~~~-- 334 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG--AYPGRWEGEIFIDGKPVKIRNPQQ-- 334 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC--CCCCCCCcEEEECCEECCCCCHHH--
Confidence 589999999982 2 8999999999999999999999999999998 455 58999999998774321100
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHH-HHHHhc---CChhc
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV-YDELKS---IEADA 205 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~---~~~~~ 205 (262)
. . ...+.+..+......+ ....+ ..+++... ...+.. .....
T Consensus 335 ~-~---~~~i~~v~q~~~~~~~-~~~~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~~ 380 (506)
T PRK13549 335 A-I---AQGIAMVPEDRKRDGI-VPVMG-----------------------------VGKNITLAALDRFTGGSRIDDAA 380 (506)
T ss_pred H-H---HCCCEEeCcchhhCCC-cCCCC-----------------------------HHHHhhhhhhhhhccCcccChHH
Confidence 0 0 0001111110000000 00011 01111100 000100 11122
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 381 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 381 ELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred HHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 345688999999996345688899999999999999999999999999999999998
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=8.6e-31 Score=257.37 Aligned_cols=162 Identities=27% Similarity=0.394 Sum_probs=113.5
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|++ |+||+|++|+++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g--l~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG--LYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 4899999999963 8999999999999999999999999999998 789999999999999877665554443
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+..+|+.+.... . ..+. +...+. ...+.
T Consensus 541 i~~v~Q~~~lf-----------~~TI~eNi~~~~~~---------------~---~~~~---i~~a~~-------~~~l~ 581 (694)
T TIGR03375 541 IGYVPQDPRLF-----------YGTLRDNIALGAPY---------------A---DDEE---ILRAAE-------LAGVT 581 (694)
T ss_pred cEEECCChhhh-----------hhhHHHHHhCCCCC---------------C---CHHH---HHHHHH-------HcChH
Confidence 33333332222 12223344332100 0 0000 111111 11233
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |+++...++ ...||||||||++|||||+.+|++|||||||++||
T Consensus 582 ~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 582 EFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred HHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 444443 666544444 56799999999999999999999999999999998
No 263
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=5.4e-31 Score=259.35 Aligned_cols=163 Identities=25% Similarity=0.378 Sum_probs=112.4
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++||+++|+. |+||+|++|+++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++..+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g--l~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG--FFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 5899999999963 8999999999999999999999999999998 7899999999999998766655544333
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|...++ +.+..+|+.+.... ..+ .+.+ .+.+ ....+.+
T Consensus 551 ~~v~Q~~~lf-----------~gTI~eNi~l~~~~--------------~~~---~~~i---~~a~-------~~a~l~~ 592 (708)
T TIGR01193 551 NYLPQEPYIF-----------SGSILENLLLGAKE--------------NVS---QDEI---WAAC-------EIAEIKD 592 (708)
T ss_pred EEEecCceeh-----------hHHHHHHHhccCCC--------------CCC---HHHH---HHHH-------HHhCCHH
Confidence 3332222221 11223344332100 000 0000 0001 1112333
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..+ |+++...+. ...||||||||++|||||+++|++|||||||++||
T Consensus 593 ~i~~lp~gldt~i~e~-G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 593 DIENMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHhcccccCcEecCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 44433 665544433 56799999999999999999999999999999998
No 264
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-31 Score=251.29 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=105.8
Q ss_pred eeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 63 ENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 63 ~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
+|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++........ . ..
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~---~---~~ 73 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG--IYQKDSGSILFQGKEIDFKSSKEA---L---EN 73 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC--CCCCCceEEEECCEECCCCCHHHH---H---hC
Confidence 466666654 7888999999999999999999999999998 678999999999988743221100 0 00
Q ss_pred HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc--CChhcHHHHHHHHHH
Q psy2689 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS--IEADAAEPRARRILA 215 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~ 215 (262)
.+.+..+...+ ....++ .+++......... ........++.++++
T Consensus 74 ~i~~v~q~~~~----~~~~tv-----------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (491)
T PRK10982 74 GISMVHQELNL----VLQRSV-----------------------------MDNMWLGRYPTKGMFVDQDKMYRDTKAIFD 120 (491)
T ss_pred CEEEEeccccc----ccCCCH-----------------------------HHHhhcccccccccccCHHHHHHHHHHHHH
Confidence 01111000000 000110 0111000000000 011223456788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 ~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD 166 (491)
T PRK10982 121 ELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166 (491)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 99997 45678899999999999999999999999999999999998
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=7.3e-31 Score=250.55 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=111.3
Q ss_pred eEEEeeeeEeeC-----------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 59 DIKVENFSLSPC-----------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 59 ~i~i~~v~~~~~-----------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
+|+++|+++.|+ + ++||+|.+|+++||+||||||||||+++|+| +. |++|+|.++|.++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G--l~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR--LI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC--cC-CCCcEEEECCEEccc
Confidence 589999999983 2 8999999999999999999999999999998 33 589999999987743
Q ss_pred CchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-cC
Q psy2689 123 SDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-SI 201 (262)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 201 (262)
.+.... ..+......+.+ ... ..+++..+ ..+++........ ..
T Consensus 352 ~~~~~~----------~~~~~~i~~v~q---~~~-------------~~l~~~~t---------v~e~l~~~~~~~~~~~ 396 (529)
T PRK15134 352 LNRRQL----------LPVRHRIQVVFQ---DPN-------------SSLNPRLN---------VLQIIEEGLRVHQPTL 396 (529)
T ss_pred cchhhH----------HHhhhceEEEEe---Cch-------------hhcCCccc---------HHHHHHHHHHhccccC
Confidence 221100 000000111100 000 00000000 1111211110000 01
Q ss_pred ChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 202 ~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.......++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 397 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 397 SAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 1223345788999999997445788999999999999999999999999999999999998
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.9e-31 Score=249.59 Aligned_cols=167 Identities=22% Similarity=0.260 Sum_probs=111.4
Q ss_pred eeEEEeeeeEee---CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc-CCceeEEEeccccccCchhHH
Q psy2689 58 VDIKVENFSLSP---CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI-PSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 58 ~~i~i~~v~~~~---~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.+|+++|+++.| ++ ++||+|.+||++||+||||||||||+++|+| +.. |++|+|.++|+++.......
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G--~~~p~~~G~i~~~g~~~~~~~~~~- 332 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG--AYPGKFEGNVFINGKPVDIRNPAQ- 332 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC--CCCCCCCeEEEECCEECCCCCHHH-
Confidence 368999999988 22 8999999999999999999999999999998 455 47999999998774221100
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCChh
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEAD 204 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~ 204 (262)
. ....+.+..+......+ .+..+ ..|+.+. ....+. .....
T Consensus 333 -~----~~~~i~~v~q~~~~~~l-~~~~tv~~~~~~~-----------------------------~~~~~~~~~~~~~~ 377 (500)
T TIGR02633 333 -A----IRAGIAMVPEDRKRHGI-VPILGVGKNITLS-----------------------------VLKSFCFKMRIDAA 377 (500)
T ss_pred -H----HhCCCEEcCcchhhCCc-CCCCCHHHHhcch-----------------------------hhhhhccCCcCCHH
Confidence 0 00011111111000000 00011 0111110 000010 01112
Q ss_pred cHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 378 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 378 AELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred HHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 2345688999999996434688899999999999999999999999999999999998
No 267
>KOG0055|consensus
Probab=99.97 E-value=5.2e-31 Score=261.81 Aligned_cols=164 Identities=25% Similarity=0.397 Sum_probs=127.1
Q ss_pred ceeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 57 SVDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.-.|+++||+|+|+. |+||+|++|+.+||||||||||||.+.+|-+ +|.|+.|.|.+||+++...+...+
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR--fYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER--FYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCCeEEECCcccccCCHHHH
Confidence 345999999999975 8999999999999999999999999999998 899999999999999998887765
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
+..+ .+..|+..+. ..+..+|+.+....- .. .++ ......+
T Consensus 1063 R~~i-------~lVsQEP~LF----~~TIrENI~YG~~~v------------------s~---~eI-------i~Aak~A 1103 (1228)
T KOG0055|consen 1063 RKQI-------GLVSQEPVLF----NGTIRENIAYGSEEV------------------SE---EEI-------IEAAKLA 1103 (1228)
T ss_pred HHhc-------ceeccCchhh----cccHHHHHhccCCCC------------------CH---HHH-------HHHHHHh
Confidence 5433 3333333332 334556777652110 00 001 1112345
Q ss_pred HHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++.+..+ |+++...++ -.+||||||||+|||||+++||+||||||.||+||
T Consensus 1104 NaH~FI~sLP~GyDT~vGer-G~QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1104 NAHNFISSLPQGYDTRVGER-GVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred hhHHHHhcCcCcccCccCcc-cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 577777776 898887777 56799999999999999999999999999999998
No 268
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=7.7e-31 Score=225.14 Aligned_cols=148 Identities=24% Similarity=0.294 Sum_probs=98.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC----CceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP----SSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSK 147 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p----~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (262)
++||+|.+|++++|+||||||||||+++|+| +..| ++|+|.++|+++.... . ....+.+..+...
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~~~~~G~i~~~g~~~~~~~--~-------~~~~i~~~~q~~~ 72 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILG--LLPPGLTQTSGEILLDGRPLLPLS--I-------RGRHIATIMQNPR 72 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCccCccccEEEECCEechhhh--h-------hhheeEEEecCch
Confidence 5778899999999999999999999999998 5566 8999999998763210 0 0000111100000
Q ss_pred HHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCCh--hhhc
Q psy2689 148 LEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTK--EMQE 225 (262)
Q Consensus 148 l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~--~~~~ 225 (262)
. ......+ ..+++...... ..........++.++++.+++.. ...+
T Consensus 73 ~--~~~~~~t-----------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 120 (230)
T TIGR02770 73 T--AFNPLFT-----------------------------MGNHAIETLRS-LGKLSKQARALILEALEAVGLPDPEEVLK 120 (230)
T ss_pred h--hcCcccC-----------------------------HHHHHHHHHHH-cCccHHHHHHHHHHHHHHcCCCchHHHHh
Confidence 0 0000000 00111100000 01111223456888999999972 3567
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 121 ~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred CChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 8899999999999999999999999999999999998
No 269
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.7e-30 Score=205.78 Aligned_cols=167 Identities=26% Similarity=0.377 Sum_probs=118.8
Q ss_pred eEEEeeeeEeeC-----C-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc--cccCc
Q psy2689 59 DIKVENFSLSPC-----L-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE--VEASD 124 (262)
Q Consensus 59 ~i~i~~v~~~~~-----~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~--i~~~~ 124 (262)
.+.++|++++|. + ++||++..||+++|=||||+||||||++|.+ -|.|++|+|++--+. +....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa--NY~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA--NYLPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh--ccCCCCceEEEEeCcchhhhhc
Confidence 356677777762 2 8999999999999999999999999999998 589999999985433 11111
Q ss_pred hhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh
Q psy2689 125 DSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204 (262)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (262)
..-+.++....+.+.+..|.-..- +... ..+.++++... .....+
T Consensus 82 -a~pr~vl~vRr~TiGyVSQFLRvi----PRV~-----------------------------aLdVvaePll~-~gv~~~ 126 (235)
T COG4778 82 -AEPREVLEVRRTTIGYVSQFLRVI----PRVS-----------------------------ALDVVAEPLLA-RGVPRE 126 (235)
T ss_pred -cChHHHHHHHHhhhHHHHHHHHhc----cCcc-----------------------------hHHHHHhHHHH-cCCCHH
Confidence 111122233333444443322210 0111 11222222211 234556
Q ss_pred cHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..++..+|.+++++..++.-++.++||||||||-|||.++.+-+||+|||||++||
T Consensus 127 ~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 127 VARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred HHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 6788899999999999888889999999999999999999999999999999999998
No 270
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=241.34 Aligned_cols=163 Identities=29% Similarity=0.372 Sum_probs=122.6
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH-HHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN-IVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~-~~~ 132 (262)
.++++|++|+|++ ++||++.+||++||+|.||||||||+|+|+| .+.|++|+|+++|+.+...+...-. .-+
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsG--v~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSG--VYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhC--cccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 5889999999997 9999999999999999999999999999998 7899999999999998765543211 111
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....|...+. ++++ ++|+++.....+ .+.-+.......++.
T Consensus 86 ~~V~QEl~L~-----------p~LsVaeNifLgre~~~---------------------------~~g~id~~~m~~~A~ 127 (500)
T COG1129 86 ATVHQELSLV-----------PNLSVAENIFLGREPTR---------------------------RFGLIDRKAMRRRAR 127 (500)
T ss_pred EEEeechhcc-----------CCccHHHHhhccccccc---------------------------CCCccCHHHHHHHHH
Confidence 1111211111 2222 355554321110 011123345567899
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++|+.+|+... .+.++.+||.||||-|+|||||..+++||||||||++|+
T Consensus 128 ~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt 177 (500)
T COG1129 128 ELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177 (500)
T ss_pred HHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99999998633 778899999999999999999999999999999999995
No 271
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=2.3e-30 Score=245.00 Aligned_cols=167 Identities=28% Similarity=0.353 Sum_probs=111.0
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-CceeEEEeccccccCchhHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-SSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.+|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..| ++|+|.++|+++..... ...
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G--~~~~~~~G~i~~~g~~~~~~~~-~~~-- 333 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG--DHPQGYSNDLTLFGRRRGSGET-IWD-- 333 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC--CCCcccCCeEEEecccCCCCCC-HHH--
Confidence 46999999999975 8999999999999999999999999999998 3343 69999999986521110 000
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHH--HhcCChhcHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE--LKSIEADAAEPR 209 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~ 209 (262)
....+.+..+...+. .....+..+..... .... +..........+
T Consensus 334 ---~~~~i~~v~q~~~~~--~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 380 (490)
T PRK10938 334 ---IKKHIGYVSSSLHLD--YRVSTSVRNVILSG----------------------------FFDSIGIYQAVSDRQQKL 380 (490)
T ss_pred ---HHhhceEECHHHHhh--cccCCcHHHHHHhc----------------------------cccccccccCCCHHHHHH
Confidence 001111111110000 00001111111000 0000 000001123456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 381 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD 433 (490)
T PRK10938 381 AQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433 (490)
T ss_pred HHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 88999999997435788899999999999999999999999999999999998
No 272
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=3.6e-30 Score=246.75 Aligned_cols=150 Identities=25% Similarity=0.263 Sum_probs=107.6
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|++++|++ |+||+|++|++++|+||||||||||+++|+| ++.|++|+|.++|+++...+...++..+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG--LYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 4899999999953 8999999999999999999999999999998 7899999999999988655433222111
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|...++ . .+.. .......++.+.+
T Consensus 400 ~~v~q~~~lf---------------------~-----------~ti~--------------------~n~~~~~~~~~~~ 427 (547)
T PRK10522 400 SAVFTDFHLF---------------------D-----------QLLG--------------------PEGKPANPALVEK 427 (547)
T ss_pred EEEecChhHH---------------------H-----------Hhhc--------------------cccCchHHHHHHH
Confidence 1111111000 0 0000 0001122345667
Q ss_pred HHHhCCCChhhh--cC--CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQ--EK--STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~--~~--~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+++..... +. ....||||||||++|||||+.+|++|||||||++||
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD 481 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQD 481 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 777787764321 11 135799999999999999999999999999999998
No 273
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=2.3e-30 Score=227.73 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=103.3
Q ss_pred EEEeeeeEeeC--C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 60 IKVENFSLSPC--L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 60 i~i~~v~~~~~--~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
|.++|+++.|. + ++||+|.+||++||+||||||||||+++|+|. .. ++|+|+++|.++...+...++..+
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl--~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--LN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--cC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 67889999883 2 89999999999999999999999999999983 34 789999999987543322111101
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+. +.. . ++ + .+ ..+++ .... .....++.+
T Consensus 80 -------------~~v~---q~~-~----lf----------~-~t---------v~~nl-------~~~~-~~~~~~~~~ 110 (275)
T cd03289 80 -------------GVIP---QKV-F----IF----------S-GT---------FRKNL-------DPYG-KWSDEEIWK 110 (275)
T ss_pred -------------EEEC---CCc-c----cc----------h-hh---------HHHHh-------hhcc-CCCHHHHHH
Confidence 1100 000 0 00 0 00 00111 1000 012235667
Q ss_pred HHHhCCCChhhhcCCCCC-----------CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKE-----------FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~-----------LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+.. ..++.+.. ||||||||++|||||+.+|+||||||||++||
T Consensus 111 ~l~~~gL~~-~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD 170 (275)
T cd03289 111 VAEEVGLKS-VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 (275)
T ss_pred HHHHcCCHH-HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 778888863 45565655 99999999999999999999999999999998
No 274
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.9e-30 Score=218.06 Aligned_cols=145 Identities=23% Similarity=0.340 Sum_probs=97.6
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.++++|++++|+. ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|.++...+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~~~g~~~~~~~~~~~~-- 81 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFR--FLEAEEGKIEIDGIDISTIPLEDLR-- 81 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhc--ccCCCCCeEEECCEEhHHCCHHHHH--
Confidence 4778888888852 8999999999999999999999999999998 6789999999999876432211100
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
..+.+..+... +++ .+ ..+++. .... .....+.
T Consensus 82 -----~~i~~v~q~~~------------------------~~~-~t---------v~~~l~----~~~~----~~~~~~~ 114 (207)
T cd03369 82 -----SSLTIIPQDPT------------------------LFS-GT---------IRSNLD----PFDE----YSDEEIY 114 (207)
T ss_pred -----hhEEEEecCCc------------------------ccC-cc---------HHHHhc----ccCC----CCHHHHH
Confidence 00111000000 000 00 001110 0000 0112233
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++ .++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 115 ~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 157 (207)
T cd03369 115 GALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157 (207)
T ss_pred HHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 3333 245688999999999999999999999999999999998
No 275
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=247.51 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=112.5
Q ss_pred eeEEEeeeeEeeCCCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 58 VDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 58 ~~i~i~~v~~~~~~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
..++++|+++..-.++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+.... ...
T Consensus 256 ~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G--~~~p~~G~I~~~g~~i~~~~~~~~------~~~ 327 (501)
T PRK10762 256 VRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG--ALPRTSGYVTLDGHEVVTRSPQDG------LAN 327 (501)
T ss_pred cEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhC--CCCCCceEEEECCEECCCCCHHHH------HHC
Confidence 358899999765569999999999999999999999999999998 678999999999988743221100 000
Q ss_pred HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHH-HHHHhc----CChhcHHHHHHH
Q psy2689 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV-YDELKS----IEADAAEPRARR 212 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~----~~~~~~~~~~~~ 212 (262)
.+.+..+......+ ....++ .+++... ...... ........++.+
T Consensus 328 ~i~~v~q~~~~~~~-~~~~tv-----------------------------~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
T PRK10762 328 GIVYISEDRKRDGL-VLGMSV-----------------------------KENMSLTALRYFSRAGGSLKHADEQQAVSD 377 (501)
T ss_pred CCEEecCccccCCC-cCCCcH-----------------------------HHHhhhhhhhhhcccccccCHHHHHHHHHH
Confidence 11111111000000 000110 0111000 000000 111223456889
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 378 ~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD 427 (501)
T PRK10762 378 FIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427 (501)
T ss_pred HHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 99999995345688999999999999999999999999999999999998
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=2.9e-30 Score=249.29 Aligned_cols=162 Identities=23% Similarity=0.380 Sum_probs=110.8
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|++++|++ |+||++++|++++|+|+||||||||+++|+| ++.|.+|+|.++|.++...+...++..+
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR--VFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4899999999953 8999999999999999999999999999998 7899999999999998766554433322
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....|...++ ..+...|+.+.... .. .+. +...+ ....+.+
T Consensus 412 ~~v~Q~~~lf-----------~~Ti~~Ni~~~~~~---------------~~---d~~---i~~al-------~~~~l~~ 452 (588)
T PRK13657 412 AVVFQDAGLF-----------NRSIEDNIRVGRPD---------------AT---DEE---MRAAA-------ERAQAHD 452 (588)
T ss_pred EEEecCcccc-----------cccHHHHHhcCCCC---------------CC---HHH---HHHHH-------HHhCHHH
Confidence 2222211111 12223344332100 00 000 00001 1112334
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++..+ |+++...+ ....||||||||++|||||+++|++|||||||++||
T Consensus 453 ~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD 503 (588)
T PRK13657 453 FIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503 (588)
T ss_pred HHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 44443 66544333 356799999999999999999999999999999998
No 277
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=1.3e-30 Score=226.24 Aligned_cols=145 Identities=29% Similarity=0.384 Sum_probs=97.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|+++||+||||||||||+++|+|. . |.+|+|.++|+++...+..... ..+.+..+...+
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl--~-~~~G~i~~~g~~i~~~~~~~~~-------~~i~~v~q~~~~--- 80 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGL--L-PGSGSIQFAGQPLEAWSAAELA-------RHRAYLSQQQTP--- 80 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--C-CCCeEEEECCEecCcCCHHHHh-------hheEEecccCcc---
Confidence 77889999999999999999999999999983 3 4589999999887533221110 001111100000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
....+ ..+++... . ...........++.++++.+|+. ...++++.+|
T Consensus 81 -~~~~t-----------------------------v~~nl~~~-~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 127 (248)
T PRK03695 81 -PFAMP-----------------------------VFQYLTLH-Q-PDKTRTEAVASALNEVAEALGLD-DKLGRSVNQL 127 (248)
T ss_pred -CCCcc-----------------------------HHHHHHhc-C-ccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccC
Confidence 00000 00111000 0 00011122345678899999996 4568889999
Q ss_pred CHHHHHHHHHHHHHcc-------CCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFL-------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~-------~P~lLlLDEPT~~LD 262 (262)
|||||||++|||||+. +|++|||||||++||
T Consensus 128 S~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD 165 (248)
T PRK03695 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165 (248)
T ss_pred CHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCC
Confidence 9999999999999997 679999999999998
No 278
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-30 Score=224.98 Aligned_cols=167 Identities=21% Similarity=0.287 Sum_probs=106.5
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~ 129 (262)
-.|.++|++++|++ ++||+|.+||+++|+||||||||||+++|+|..-+.| ++|+|.++|+++...+...-.
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 35889999999965 8999999999999999999999999999998421112 799999998776321100000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh-hcHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA-DAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 208 (262)
. .....+.+..+...+ . .. + ..+++..... ...... ...+.
T Consensus 95 ~---~~~~~i~~~~q~~~~---~-~~-t-----------------------------v~eni~~~~~-~~~~~~~~~~~~ 136 (265)
T PRK14252 95 I---EVRMRISMVFQKPNP---F-PK-S-----------------------------IFENVAYGLR-IRGVKRRSILEE 136 (265)
T ss_pred H---HHhccEEEEccCCcC---C-cc-h-----------------------------HHHHHHhHHH-HcCCChHHHHHH
Confidence 0 000001111100000 0 00 0 1111110000 011111 12234
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++.. ...++.+.+|||||+||++|||||+.+|++|||||||++||
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD 193 (265)
T PRK14252 137 RVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193 (265)
T ss_pred HHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 5667777777631 34567889999999999999999999999999999999998
No 279
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=229.38 Aligned_cols=175 Identities=23% Similarity=0.310 Sum_probs=110.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc----cCCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA----IPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~----~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
.|.++|+++.|++ ++||+|.+|+++||+||||||||||+++|+|. +. .|.+|+|.++|.++........
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl-~~~~~~~p~~G~I~i~g~~i~~~~~~~~- 122 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM-NDRIKAARIDGSVELDGQDIYQDGVNLV- 122 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-ccccCCCCCceEEEECCEEcccccccHH-
Confidence 5899999999975 89999999999999999999999999999984 22 2689999999987642111000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAEP 208 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 208 (262)
.....+.+..+...+ . ......|+.+..... . ... ......+.... ......
T Consensus 123 ----~~~~~i~~v~q~~~l---~-~~tv~enl~~~~~~~--------~---------~~~--~~~~~~~~~~~~~~~~~~ 175 (305)
T PRK14264 123 ----ELRKRVGMVFQSPNP---F-PKSIRENISYGPRKH--------G---------DIN--TGLLARLLGRDDKDAEDE 175 (305)
T ss_pred ----HHhhceEEEccCCcc---c-cccHHHHHHhHHhhc--------c---------ccc--ccccccccccCchHHHHH
Confidence 000011111111000 0 011111211110000 0 000 00000000011 112245
Q ss_pred HHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+++.. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 176 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD 232 (305)
T PRK14264 176 LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232 (305)
T ss_pred HHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6788888888742 34577889999999999999999999999999999999998
No 280
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=2.3e-30 Score=249.01 Aligned_cols=163 Identities=27% Similarity=0.389 Sum_probs=108.5
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.+ |+||+|++|++++|+|+||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g--l~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR--FYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh--ccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 4899999999853 8999999999999999999999999999998 789999999999999866554433222
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+ .+.+|...+. +.+..+|+.+.... +. ..+.+.+ .+ ....+.
T Consensus 408 i-------~~v~Q~~~lf----~~Ti~~Ni~~~~~~--------------~~---~~~~i~~---~l-------~~~~l~ 449 (571)
T TIGR02203 408 V-------ALVSQDVVLF----NDTIANNIAYGRTE--------------QA---DRAEIER---AL-------AAAYAQ 449 (571)
T ss_pred c-------eEEccCcccc----cccHHHHHhcCCCC--------------CC---CHHHHHH---HH-------HHcChH
Confidence 2 2222221111 12222333322100 00 0000000 00 011233
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++..+ |+++...+. ...||||||||++||||++.+|++|||||||++||
T Consensus 450 ~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD 501 (571)
T TIGR02203 450 DFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501 (571)
T ss_pred HHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 334433 454433333 45799999999999999999999999999999999
No 281
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-30 Score=223.73 Aligned_cols=165 Identities=22% Similarity=0.251 Sum_probs=109.9
Q ss_pred CCceeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccccccCc
Q psy2689 55 DNSVDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQEVEASD 124 (262)
Q Consensus 55 ~~~~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~i~~~~ 124 (262)
+.+..+.++++++.|+. ++||+|.+|+++||+||||||||||+++|+|. ..| .+|+|.++|+++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 4 EAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM--NDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred CCCceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cccccCCCCceEEEECCEeccccc
Confidence 34566889999999975 89999999999999999999999999999983 443 7999999999874211
Q ss_pred hhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChh
Q psy2689 125 DSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEAD 204 (262)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (262)
..... ....+.+..+...+ . ..+ ..+++.... .+... ..
T Consensus 82 ~~~~~-----~~~~i~~v~q~~~~---~--~~t-----------------------------v~enl~~~~-~~~~~-~~ 120 (261)
T PRK14263 82 VDPVV-----VRRYIGMVFQQPNP---F--SMS-----------------------------IFDNVAFGL-RLNRY-KG 120 (261)
T ss_pred cchHh-----hhhceEEEecCCcc---c--ccc-----------------------------HHHHHHHHH-hhcCc-hH
Confidence 10000 00001110000000 0 000 111111100 01111 11
Q ss_pred cHHHHHHHHHHhCCCChh---hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 205 AAEPRARRILAGLGFTKE---MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 205 ~~~~~~~~~l~~lgl~~~---~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....++.++++.+++... ..++++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 121 ~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD 181 (261)
T PRK14263 121 DLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 (261)
T ss_pred HHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 233567888899888532 3356788999999999999999999999999999999998
No 282
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-30 Score=215.73 Aligned_cols=60 Identities=35% Similarity=0.498 Sum_probs=53.3
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG--LEEPDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEEcc
Confidence 357788888864 7899999999999999999999999999998 67899999999998764
No 283
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=3.1e-30 Score=210.28 Aligned_cols=109 Identities=31% Similarity=0.413 Sum_probs=86.8
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
|+++|+++.|++ ++||+|.+||+++|+||||||||||+++|+| +..|++|+|.++++++...+..
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--~~~~~~G~v~~~g~~~~~~~~~-------- 70 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPDSGEILVDGKEVSFASPR-------- 70 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEECCcCCHH--------
Confidence 357888888865 8899999999999999999999999999998 6789999999998876321100
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
. . . -
T Consensus 71 --~---~--------------------------------------------------------------------~---~ 74 (163)
T cd03216 71 --D---A--------------------------------------------------------------------R---R 74 (163)
T ss_pred --H---H--------------------------------------------------------------------H---h
Confidence 0 0 0 0
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+++. .+|||||+||++|||||+.+|++|||||||++||
T Consensus 75 ~~i~~~--------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD 114 (163)
T cd03216 75 AGIAMV--------YQLSVGERQMVEIARALARNARLLILDEPTAALT 114 (163)
T ss_pred cCeEEE--------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 001111 1199999999999999999999999999999998
No 284
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=3e-30 Score=247.07 Aligned_cols=162 Identities=26% Similarity=0.415 Sum_probs=110.1
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.++++|++++|++ |+||++++|++++|+||||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEehhhCCHHHHhhh
Confidence 5899999999942 8999999999999999999999999999998 688999999999998865443322211
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+. +..|...+. +....+|+.+.... .+ .+ ++...+ ....+.
T Consensus 394 i~-------~v~q~~~lf----~~ti~~Ni~~~~~~---------------~~---~~---~~~~~~-------~~~~~~ 434 (544)
T TIGR01842 394 IG-------YLPQDVELF----PGTVAENIARFGEN---------------AD---PE---KIIEAA-------KLAGVH 434 (544)
T ss_pred eE-------EecCCcccc----cccHHHHHhccCCC---------------CC---HH---HHHHHH-------HHhChH
Confidence 11 111111110 11222333221100 00 00 011111 112245
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+ |+++. .......||||||||++|||||+.+|++|||||||++||
T Consensus 435 ~~i~~l~~gl~t~-~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD 486 (544)
T TIGR01842 435 ELILRLPDGYDTV-IGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486 (544)
T ss_pred HHHHhCccccccc-cCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccC
Confidence 566666 66654 344577899999999999999999999999999999998
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=247.10 Aligned_cols=172 Identities=15% Similarity=0.244 Sum_probs=111.7
Q ss_pred eeEEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 58 VDIKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 58 ~~i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
..|+++|+++.+.. ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++........ .
T Consensus 249 ~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~~~~~---~-- 321 (491)
T PRK10982 249 VILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG--IREKSAGTITLHGKKINNHNANEA---I-- 321 (491)
T ss_pred cEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcC--CCcCCccEEEECCEECCCCCHHHH---H--
Confidence 36899999988532 8999999999999999999999999999998 678999999999987743221100 0
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+.+..+..... .++++.+..++. ....+..................+.+++
T Consensus 322 -~~~i~~~~q~~~~~---------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (491)
T PRK10982 322 -NHGFALVTEERRST---------------------GIYAYLDIGFNS----LISNIRNYKNKVGLLDNSRMKSDTQWVI 375 (491)
T ss_pred -HCCCEEcCCchhhC---------------------CcccCCcHHHhe----ehhhhhhhcccccccCcHHHHHHHHHHH
Confidence 00011111100000 000000000000 0000000000000001122345678899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+++.....++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 376 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD 423 (491)
T PRK10982 376 DSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423 (491)
T ss_pred HhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 999995345688999999999999999999999999999999999998
No 286
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-30 Score=219.97 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=92.1
Q ss_pred eEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchh
Q psy2689 59 DIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDS 126 (262)
Q Consensus 59 ~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~ 126 (262)
.++++|+++.|+. ++||+|.+|++++|+||||||||||+++|+| +.. |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN--RTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcc--cCCCCCCcceEEEECCEECccchhh
Confidence 3677888887742 7889999999999999999999999999998 455 8899999999876422100
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcH
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAA 206 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (262)
. ...+.+..+ .. .+++..+ ..+++.. .
T Consensus 81 -~-------~~~i~~~~q---------~~---------------~~~~~~t---------v~~~l~~-----~------- 107 (202)
T cd03233 81 -Y-------PGEIIYVSE---------ED---------------VHFPTLT---------VRETLDF-----A------- 107 (202)
T ss_pred -h-------cceEEEEec---------cc---------------ccCCCCc---------HHHHHhh-----h-------
Confidence 0 000000000 00 0000000 0011100 0
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.. .. .++++..||||||||++|||||+.+|++|||||||++||
T Consensus 108 -~~-------~~-----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD 150 (202)
T cd03233 108 -LR-------CK-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150 (202)
T ss_pred -hh-------hc-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCC
Confidence 00 00 356688999999999999999999999999999999998
No 287
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=3.6e-30 Score=245.37 Aligned_cols=164 Identities=32% Similarity=0.405 Sum_probs=109.7
Q ss_pred eeEEEeeeeEeeC-----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEe-cccc---ccC
Q psy2689 58 VDIKVENFSLSPC-----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC-EQEV---EAS 123 (262)
Q Consensus 58 ~~i~i~~v~~~~~-----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~-~~~i---~~~ 123 (262)
.+|+++|++++|+ . ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++ +.+. ...
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G--l~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG--VLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEEecCCcccccccc
Confidence 3699999999993 1 8999999999999999999999999999998 668999999996 5432 111
Q ss_pred chhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh
Q psy2689 124 DDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203 (262)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (262)
.... ...+......+.+ .. .+++..+ ..+++.... .+ ....
T Consensus 356 ~~~~----------~~~~~~~i~~v~q---~~---------------~l~~~~t---------v~e~l~~~~-~~-~~~~ 396 (520)
T TIGR03269 356 GPDG----------RGRAKRYIGILHQ---EY---------------DLYPHRT---------VLDNLTEAI-GL-ELPD 396 (520)
T ss_pred chhh----------HHHHhhhEEEEcc---Cc---------------ccCCCCc---------HHHHHHHHH-Hc-CCCH
Confidence 0000 0000000111110 00 0000000 111111111 01 1112
Q ss_pred hcHHHHHHHHHHhCCCCh----hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTK----EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~----~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.....++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD 459 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 223456888999999964 24678999999999999999999999999999999999998
No 288
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=2.2e-30 Score=220.45 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=95.7
Q ss_pred EEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 61 KVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 61 ~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
.+.|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.+++.++.......... .
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~~~~~~~---~ 76 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG--EMQTLEGKVHWSNKNESEPSFEATRS---R 76 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCCeEEECCcccccccccccch---h
Confidence 35667777753 7888999999999999999999999999998 56899999999988764321100000 0
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
....+.+..+...+ . ......|+.+. ... ...++.+++
T Consensus 77 ~~~~i~~~~q~~~~---~-~~t~~~nl~~~----------------------------------~~~----~~~~~~~~~ 114 (218)
T cd03290 77 NRYSVAYAAQKPWL---L-NATVEENITFG----------------------------------SPF----NKQRYKAVT 114 (218)
T ss_pred hcceEEEEcCCCcc---c-cccHHHHHhhc----------------------------------CcC----CHHHHHHHH
Confidence 00001011000000 0 00000111000 000 011122333
Q ss_pred HhCCCChh----------hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKE----------MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~----------~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+++... ..++++..|||||||||+|||||+.+|++|||||||++||
T Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 115 DACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred HHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 44443211 1345688999999999999999999999999999999998
No 289
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-30 Score=214.21 Aligned_cols=59 Identities=34% Similarity=0.542 Sum_probs=52.3
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+++|++++|++ ++||++.+|++++|+||||||||||+++|+| +..|.+|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G--~~~~~~G~i~~~g~~~~ 65 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDSGEIKVLGKDIK 65 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEEcc
Confidence 56778877754 7899999999999999999999999999998 67899999999998763
No 290
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=7.4e-30 Score=244.89 Aligned_cols=151 Identities=25% Similarity=0.290 Sum_probs=108.1
Q ss_pred eEEEeeeeEeeCC----------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPCL----------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~~----------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.|+++||+++|++ |+||++++|++++|+||||||||||+++|+| ++.|++|+|.++|.++...+...+
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG--LYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCCCCHHHH
Confidence 5899999999952 6999999999999999999999999999998 789999999999999866543322
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
+..+....|...++. .+..+ + ...+..++
T Consensus 415 ~~~i~~v~q~~~lf~--------------------------------~ti~~---------n----------~~~~~~~~ 443 (555)
T TIGR01194 415 RDLFSAIFADFHLFD--------------------------------DLIGP---------D----------EGEHASLD 443 (555)
T ss_pred HhhCcEEccChhhhh--------------------------------hhhhc---------c----------cccchhHH
Confidence 221111111111100 00000 0 00112344
Q ss_pred HHHHHHHhCCCChhhhc-----CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQE-----KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~-----~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+++.+.... .....||||||||++|||||+.+|++|||||||++||
T Consensus 444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD 502 (555)
T TIGR01194 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQD 502 (555)
T ss_pred HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 56677788877643211 1135799999999999999999999999999999999
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=2e-30 Score=213.33 Aligned_cols=59 Identities=32% Similarity=0.426 Sum_probs=51.6
Q ss_pred EEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 61 KVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 61 ~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G--~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG--LLRPTSGRVRLDGADIS 67 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHh--ccCCCCCeEEECCEEcc
Confidence 46777777742 7888999999999999999999999999998 67899999999998764
No 292
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-30 Score=230.06 Aligned_cols=165 Identities=22% Similarity=0.328 Sum_probs=107.2
Q ss_pred eeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc---cCCceeEEEeccccccCchhH
Q psy2689 58 VDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~---~p~~g~i~~~~~~i~~~~~~~ 127 (262)
-.|+++|++++|.. ++||+|.+|+++||+||||||||||+++|+|..-. .|.+|+|.++|+++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 46899999999941 89999999999999999999999999999984211 267999999999874221100
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC-hhcH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAA 206 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 206 (262)
.. ....+.+..+...+ . ......|+.+. ....... ....
T Consensus 159 ~~-----lr~~i~~v~q~~~~---~-~~ti~eNi~~~-------------------------------~~~~~~~~~~~~ 198 (329)
T PRK14257 159 LE-----LRTRIGMVFQKPTP---F-EMSIFDNVAYG-------------------------------PRNNGINDRKIL 198 (329)
T ss_pred Hh-----hhccEEEEecCCcc---C-CCcHHHHHHhH-------------------------------HHhcCCChHHHH
Confidence 00 00011111110000 0 00111111110 0011111 1112
Q ss_pred HHHHHHHHHhCCCCh---hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTK---EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~---~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+..+++.+++.. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD 257 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 234566777777632 23467789999999999999999999999999999999998
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.8e-30 Score=211.28 Aligned_cols=59 Identities=32% Similarity=0.464 Sum_probs=51.1
Q ss_pred EEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 61 KVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 61 ~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+++|+++.|++ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G--~~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR--LYDPTSGEILIDGVDLR 67 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHc--CCCCCCCEEEECCEEhh
Confidence 46677776642 7889999999999999999999999999998 67899999999998764
No 294
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=2.2e-30 Score=213.97 Aligned_cols=122 Identities=31% Similarity=0.432 Sum_probs=86.7
Q ss_pred EEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 61 KVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 61 ~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+++|++++|.+ ++||+|.+|++++|+||||||||||+++|+| +..|.+|+|.++|+++... .
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G--~~~~~~G~i~~~g~~~~~~-~-------- 70 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG--DLKPQQGEITLDGVPVSDL-E-------- 70 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCCEEEECCEEHHHH-H--------
Confidence 46677777642 6888999999999999999999999999998 6789999999998865211 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+......+. +...+ .. ..+.+.
T Consensus 71 -----~~~~~~i~~~~-------------------------q~~~~---------------------~~-----~tv~~~ 94 (178)
T cd03247 71 -----KALSSLISVLN-------------------------QRPYL---------------------FD-----TTLRNN 94 (178)
T ss_pred -----HHHHhhEEEEc-------------------------cCCee---------------------ec-----ccHHHh
Confidence 00000000000 00000 00 001110
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+ +.+||||||||++|||||+.+|++|||||||++||
T Consensus 95 i-------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 95 L-------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred h-------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 1 67899999999999999999999999999999998
No 295
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.8e-29 Score=240.92 Aligned_cols=178 Identities=24% Similarity=0.280 Sum_probs=110.3
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc-ccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ-EVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~-~i~~~~~~~~~~~ 131 (262)
+|+++|++++|+ + ++||+|.+|+++||+|||||||||||++|+| +..|++|+|.+++. .+....
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G--~~~p~~G~i~~~~~~~i~~v~------- 76 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG--VDKEFEGEARPAPGIKVGYLP------- 76 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEecCCCEEEEEe-------
Confidence 589999999997 4 8999999999999999999999999999998 56789999987532 121100
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhh--HHHHhhhhhccccccch---hHHHHHHHHHHHhcCChhcH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNR--VKLLKECSKLERDESGD---NQLRLTEVYDELKSIEADAA 206 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 206 (262)
+...+. .......|+.+...... ...+............+ .......+...+........
T Consensus 77 -----Q~~~~~----------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (556)
T PRK11819 77 -----QEPQLD----------PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141 (556)
T ss_pred -----cCCCCC----------CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccch
Confidence 000000 00001111111000000 00000000000000000 00001112222222222334
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+|+. . .++++++|||||||||+|||||+.+|++|||||||||||
T Consensus 142 ~~~~~~~l~~~gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD 195 (556)
T PRK11819 142 DSQLEIAMDALRCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195 (556)
T ss_pred HHHHHHHHHhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCC
Confidence 56788999999995 3 578899999999999999999999999999999999998
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=8.7e-30 Score=222.18 Aligned_cols=161 Identities=21% Similarity=0.314 Sum_probs=103.4
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|+. ++||+|.+|+++||+|+||||||||+++|+| +..|.+|+|.++|.++...+......
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~~~G~i~i~g~~i~~~~~~~~~~- 95 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR--MVDIFDGKIVIDGIDISKLPLHTLRS- 95 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHc--ccCCCCCeEEECCEEhhhCCHHHHhh-
Confidence 3889999999852 8999999999999999999999999999998 67899999999998775332211110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.+.+..+...+ . ......|+.. .. .. ....+ ...+ ....+.
T Consensus 96 ------~i~~v~q~~~l---~-~~tv~~nl~~----------------~~--~~-~~~~~---~~~l-------~~~~l~ 136 (257)
T cd03288 96 ------RLSIILQDPIL---F-SGSIRFNLDP----------------EC--KC-TDDRL---WEAL-------EIAQLK 136 (257)
T ss_pred ------hEEEECCCCcc---c-ccHHHHhcCc----------------CC--CC-CHHHH---HHHH-------HHhCcH
Confidence 01110000000 0 0000000000 00 00 00000 0000 011233
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+ |++. ..+.++.+|||||+||++|||||+.+|++|||||||++||
T Consensus 137 ~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD 188 (257)
T cd03288 137 NMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188 (257)
T ss_pred HHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 445555 6653 3456788999999999999999999999999999999998
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=1.8e-30 Score=270.09 Aligned_cols=162 Identities=22% Similarity=0.283 Sum_probs=115.9
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC----------------------
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---------------------- 108 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---------------------- 108 (262)
.|+++||+|+|.+ ++||+|++|+++|||||||||||||+++|+| ++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r--~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR--FYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH--hCCCcccccccccccccccccccccc
Confidence 5999999999941 8999999999999999999999999999998 6776
Q ss_pred --------------------------------CceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCc
Q psy2689 109 --------------------------------SSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDD 156 (262)
Q Consensus 109 --------------------------------~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (262)
++|+|+++|.++...+...++..+....| ...+ ...+
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q-------ep~L----F~gT 1311 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ-------EPML----FNMS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC-------CCcc----cccc
Confidence 69999999999987766554433333322 2222 1233
Q ss_pred hhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhC--CCChhhhcCCCCCCCHH
Q psy2689 157 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL--GFTKEMQEKSTKEFSGG 234 (262)
Q Consensus 157 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSgG 234 (262)
..+|+.+..... + .+. +... ...+.+.+++..+ |+++...++ ...||||
T Consensus 1312 IreNI~~g~~~a---------------t---~ee---I~~A-------~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGG 1362 (1466)
T PTZ00265 1312 IYENIKFGKEDA---------------T---RED---VKRA-------CKFAAIDEFIESLPNKYDTNVGPY-GKSLSGG 1362 (1466)
T ss_pred HHHHHhcCCCCC---------------C---HHH---HHHH-------HHHcCCHHHHHhCccccCCccCCC-CCcCCHH
Confidence 445655532100 0 000 1110 1122345555555 777655544 5679999
Q ss_pred HHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 235 WRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 235 erqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||||++|||||+.+|+|||||||||+||
T Consensus 1363 QkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 9999999999999999999999999999
No 298
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4.4e-30 Score=249.81 Aligned_cols=150 Identities=27% Similarity=0.361 Sum_probs=107.6
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
..|+++|+++.|++ ++||+|.+|+++||+|||||||||||++|+| +..|++|+|.+ |.++..
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G--~~~p~~G~i~~-~~~~~i---------- 384 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG--QLQADSGRIHC-GTKLEV---------- 384 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCcEEEE-CCCcEE----------
Confidence 46899999999975 8999999999999999999999999999998 57899999988 443210
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
....+.. ..+ ....++ .+++.... ...........+.+
T Consensus 385 ~y~~q~~------~~l----~~~~tv-----------------------------~e~l~~~~---~~~~~~~~~~~~~~ 422 (635)
T PRK11147 385 AYFDQHR------AEL----DPEKTV-----------------------------MDNLAEGK---QEVMVNGRPRHVLG 422 (635)
T ss_pred EEEeCcc------ccc----CCCCCH-----------------------------HHHHHhhc---ccccccchHHHHHH
Confidence 0000000 000 001110 00110000 00000112345788
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++..+++.....++++.+|||||||||+|||||+.+|++|||||||||||
T Consensus 423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99999997556788999999999999999999999999999999999998
No 299
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-29 Score=235.97 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=114.8
Q ss_pred ccccceeeeecccCCCCCcccCCCceeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 33 DELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
..++|++..|... . ..++.++|+++.|++ ++||+|.+|+++||+||||||||||+++|+|
T Consensus 5 i~~~n~tk~y~~~--~--------~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaG-- 72 (549)
T PRK13545 5 VKFEHVTKKYKMY--N--------KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG-- 72 (549)
T ss_pred EEEEeeeeecccc--c--------cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhC--
Confidence 3455666666421 1 125889999998864 7999999999999999999999999999998
Q ss_pred cccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccc
Q psy2689 105 LAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDE 183 (262)
Q Consensus 105 ~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~ 183 (262)
+..|++|+|.++|.+.... .. ..+ ....+ ..|+.+.
T Consensus 73 Ll~P~sGeI~I~G~~~~i~----------~~---~~l-----------~~~lTV~EnL~l~------------------- 109 (549)
T PRK13545 73 VTMPNKGTVDIKGSAALIA----------IS---SGL-----------NGQLTGIENIELK------------------- 109 (549)
T ss_pred CCCCCceEEEECCEeeeEE----------ec---ccc-----------CCCCcHHHHHHhh-------------------
Confidence 6789999999988652100 00 000 00111 1111110
Q ss_pred cchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 184 SGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+...........+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 110 ------------~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 110 ------------GLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred ------------hhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 0001111222334567889999996 45678899999999999999999999999999999999998
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.7e-30 Score=244.00 Aligned_cols=147 Identities=27% Similarity=0.405 Sum_probs=108.4
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~ 131 (262)
..|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.+++.. +...
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~p~~G~i~~~~~~~i~~~-------- 387 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG--ELEPDSGTVKWSENANIGYY-------- 387 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCceEEEEE--------
Confidence 36999999999975 8999999999999999999999999999998 678999999987632 1110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.+.... .+ ....+ ..+++. .+.. ....+.++.
T Consensus 388 ----~q~~~~-----~~----~~~~t-----------------------------~~~~~~----~~~~--~~~~~~~~~ 419 (530)
T PRK15064 388 ----AQDHAY-----DF----ENDLT-----------------------------LFDWMS----QWRQ--EGDDEQAVR 419 (530)
T ss_pred ----cccccc-----cC----CCCCc-----------------------------HHHHHH----Hhcc--CCccHHHHH
Confidence 000000 00 00001 001110 0000 112245678
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++|+.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 420 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 420 GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470 (530)
T ss_pred HHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 899999995456788999999999999999999999999999999999998
No 301
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=7.1e-30 Score=250.87 Aligned_cols=162 Identities=27% Similarity=0.393 Sum_probs=111.9
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|++ ++||+|++|++++|+|+||||||||+++|+| ++.|++|+|.++|.++...+...++..
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g--~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR--LYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEehhhCCHHHHHHh
Confidence 5899999999952 8999999999999999999999999999998 789999999999999876665544333
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+..+|+.+.... .+ .+. +...+ ....+.
T Consensus 533 i~~v~q~~~lf-----------~~ti~eNi~~~~~~---------------~~---~~~---i~~a~-------~~~~l~ 573 (694)
T TIGR01846 533 MGVVLQENVLF-----------SRSIRDNIALCNPG---------------AP---FEH---VIHAA-------KLAGAH 573 (694)
T ss_pred CeEEccCCeeh-----------hhhHHHHHhcCCCC---------------CC---HHH---HHHHH-------HHcChH
Confidence 32222221111 11222333321100 00 000 11111 111234
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++..+ |+++... .....||||||||++|||||+++|++|||||||++||
T Consensus 574 ~~i~~lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 574 DFISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred HHHHhCcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 445544 6665443 3467899999999999999999999999999999998
No 302
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=5e-30 Score=215.73 Aligned_cols=130 Identities=25% Similarity=0.378 Sum_probs=90.7
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
.++|+++.|++ ++||+|.+|++++|+||||||||||+++|+|.....|++|+|.++|+++...+.....
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~------ 75 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA------ 75 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh------
Confidence 57788888864 8899999999999999999999999999998311478999999999887543211000
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
...+.+..+.. .+ +.. ..+.+.+
T Consensus 76 ~~~i~~v~q~~------------------------~~-------------------------~~~-------~~~~~~l- 98 (200)
T cd03217 76 RLGIFLAFQYP------------------------PE-------------------------IPG-------VKNADFL- 98 (200)
T ss_pred hCcEEEeecCh------------------------hh-------------------------ccC-------ccHHHHH-
Confidence 00000000000 00 000 0011111
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+....+|||||+||++|||||+.+|++|||||||++||
T Consensus 99 ---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 136 (200)
T cd03217 99 ---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136 (200)
T ss_pred ---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 22345899999999999999999999999999999998
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=226.22 Aligned_cols=169 Identities=28% Similarity=0.371 Sum_probs=132.6
Q ss_pred eEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc----CCceeEEEeccccccCch
Q psy2689 59 DIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI----PSSIDLLYCEQEVEASDD 125 (262)
Q Consensus 59 ~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~----p~~g~i~~~~~~i~~~~~ 125 (262)
.++++|+++.|.- +|||+|.+||.+||||.||||||-..+.|+++ ++. ..+|+|.|+|+++.....
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~L-Lp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGL-LPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHh-cCCCcccCccceeEEcChhhhcCCH
Confidence 4778888888751 89999999999999999999999999999984 443 346899999999876655
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
..++.+.+. .+..+++.+++..|+++....+ +.+....++.+...+
T Consensus 85 ~~lr~iRG~------------~I~MIFQEPMtSLNPl~tIg~Q----------------------i~E~l~~Hrg~~~~~ 130 (534)
T COG4172 85 RQLRGVRGN------------KIGMIFQEPMTSLNPLHTIGKQ----------------------LAEVLRLHRGLSRAA 130 (534)
T ss_pred HHHhhhccc------------ceEEEecccccccCcHhHHHHH----------------------HHHHHHHHhcccHHH
Confidence 443322211 1223345677777777765332 344555566777778
Q ss_pred HHHHHHHHHHhCCCCh--hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~--~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++++.++|+.+|+.+ ...+.++++|||||||||.||.||+++|++||.||||++||
T Consensus 131 Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALD 189 (534)
T COG4172 131 ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189 (534)
T ss_pred HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhh
Confidence 8999999999999973 35678999999999999999999999999999999999998
No 304
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=4.8e-30 Score=247.52 Aligned_cols=162 Identities=22% Similarity=0.356 Sum_probs=107.6
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|++++|++ ++||+|++|+++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++..+
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR--VYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc--CCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4899999999953 8999999999999999999999999999998 7899999999999987654433222211
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
. +..|...+. .....+|+.+.... .+ .+. +...+ ....+.+
T Consensus 412 ~-------~v~q~~~lf----~~ti~~Ni~~~~~~---------------~~---~~~---~~~a~-------~~~~~~~ 452 (585)
T TIGR01192 412 A-------TVFQDAGLF----NRSIRENIRLGREG---------------AT---DEE---VYEAA-------KAAAAHD 452 (585)
T ss_pred E-------EEccCCccC----cccHHHHHhcCCCC---------------CC---HHH---HHHHH-------HHhCcHH
Confidence 1 111111110 11122333221100 00 000 00000 0111233
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..+ |+++. .......||||||||++|||||+.+|++|||||||++||
T Consensus 453 ~i~~l~~g~~t~-~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD 503 (585)
T TIGR01192 453 FILKRSNGYDTL-VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503 (585)
T ss_pred HHHhccccccch-hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 33332 56543 344577899999999999999999999999999999999
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=8.9e-30 Score=245.03 Aligned_cols=162 Identities=25% Similarity=0.344 Sum_probs=105.3
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|++++++++|.. ++||+|++|++++|+||||||||||+++|+| ++.|++|+|.++|+++...+...++..
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR--HFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc--ccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 4889999999852 8999999999999999999999999999998 789999999999998865443322211
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+ .+..|...+. ..+..+|+.+.... . ..+.+ ...+. ...+.
T Consensus 391 i-------~~v~q~~~lf----~~ti~~Ni~~~~~~---------------~---~~~~~---~~~~~-------~~~l~ 431 (569)
T PRK10789 391 L-------AVVSQTPFLF----SDTVANNIALGRPD---------------A---TQQEI---EHVAR-------LASVH 431 (569)
T ss_pred e-------EEEccCCeec----cccHHHHHhcCCCC---------------C---CHHHH---HHHHH-------HcCCH
Confidence 1 1111111110 11122333221100 0 00000 00000 00112
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |+++.. ......||||||||++|||||+.+|++|||||||++||
T Consensus 432 ~~i~~lp~gl~t~~-~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 432 DDILRLPQGYDTEV-GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred HHHHhCcCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 222222 554433 33466899999999999999999999999999999998
No 306
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.96 E-value=1.1e-29 Score=244.69 Aligned_cols=162 Identities=25% Similarity=0.386 Sum_probs=108.6
Q ss_pred eEEEeeeeEeeC----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPC----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++|++++|. . |+||+|++||+++|+||||||||||+++|+| ++.|.+|+|.++|.++...+...++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g--l~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR--FYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh--ccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 489999999984 1 8999999999999999999999999999998 78899999999999886554443322
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+ .+.+|...+. ..+..+|+.+..... ..+. +...++ ...+
T Consensus 415 ~i-------~~~~Q~~~lf----~~Ti~~Ni~~~~~~~------------------~~~~---~~~~l~-------~~~l 455 (576)
T TIGR02204 415 RM-------ALVPQDPVLF----AASVMENIRYGRPDA------------------TDEE---VEAAAR-------AAHA 455 (576)
T ss_pred hc-------eEEccCCccc----cccHHHHHhcCCCCC------------------CHHH---HHHHHH-------HcCc
Confidence 22 2222211110 122234443321000 0000 111111 1112
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+ |++.... .....||||||||++||||++.+|++|||||||++||
T Consensus 456 ~~~i~~l~~gl~t~i~-~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD 508 (576)
T TIGR02204 456 HEFISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508 (576)
T ss_pred HHHHHhCCCCCCceeC-CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccC
Confidence 3344444 5554333 3356799999999999999999999999999999998
No 307
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=6.2e-30 Score=243.15 Aligned_cols=167 Identities=21% Similarity=0.285 Sum_probs=110.8
Q ss_pred eeEEEeeeeEeeCCCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 58 VDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 58 ~~i~i~~v~~~~~~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
.+|+++|+++..-.++||+|.+|+++||+||||||||||+++|+| +..|++|+|.+++.++...+.... . ..
T Consensus 267 ~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G--l~~p~~G~i~~~g~~i~~~~~~~~---~---~~ 338 (510)
T PRK15439 267 PVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYG--LRPARGGRIMLNGKEINALSTAQR---L---AR 338 (510)
T ss_pred ceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC--CCCCCCcEEEECCEECCCCCHHHH---H---hC
Confidence 368999999643349999999999999999999999999999998 678999999999987743221100 0 00
Q ss_pred HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHH-HHHHh-cCChhcHHHHHHHHHH
Q psy2689 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV-YDELK-SIEADAAEPRARRILA 215 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~-~~~~~~~~~~~~~~l~ 215 (262)
.+.+..+......+ ....+ ..+++... ..... ..........+.++++
T Consensus 339 ~i~~v~q~~~~~~l-~~~~t-----------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 388 (510)
T PRK15439 339 GLVYLPEDRQSSGL-YLDAP-----------------------------LAWNVCALTHNRRGFWIKPARENAVLERYRR 388 (510)
T ss_pred CcEECCCChhhCCc-cCCCc-----------------------------HHHHHHhhhhhhhccccChHHHHHHHHHHHH
Confidence 01111110000000 00000 00111000 00000 0011123346788999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 389 ~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 389 ALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred HcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 99996335688899999999999999999999999999999999998
No 308
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=5.1e-29 Score=218.12 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=93.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|...... +...+
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~G--l~~p~~G~I~~~g~~~~~~-------------~~~~~---------- 96 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGG--SLSPTVGKVDRNGEVSVIA-------------ISAGL---------- 96 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CcCCCceEEEECCEEeEEe-------------cccCC----------
Confidence 7788999999999999999999999999998 6789999999987521000 00000
Q ss_pred hhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 152 EASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 152 ~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
....+ ..|+.+. ..............+..+++.+++. ...++++.+
T Consensus 97 -~~~~tv~enl~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~ 143 (264)
T PRK13546 97 -SGQLTGIENIEFK-------------------------------MLCMGFKRKEIKAMTPKIIEFSELG-EFIYQPVKK 143 (264)
T ss_pred -CCCCcHHHHHHHH-------------------------------HHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCccc
Confidence 00001 0111000 0000111112233456677788886 456788999
Q ss_pred CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||+|||+|||||+.+|++|||||||++||
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 99999999999999999999999999999998
No 309
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=2.8e-30 Score=203.83 Aligned_cols=132 Identities=34% Similarity=0.548 Sum_probs=91.0
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|.+|++++|+||||||||||+++|+| ...|.+|.|.+++.++...+.... ......+.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g--~~~~~~G~i~~~~~~~~~~~~~~~-------------~~~i~~~~-- 65 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAG--LLPPDSGSILINGKDISDIDIEEL-------------RRRIGYVP-- 65 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTT--SSHESEEEEEETTEEGTTSHHHHH-------------HHTEEEEE--
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecc--cccccccccccccccccccccccc-------------cccccccc--
Confidence 4677899999999999999999999999998 678899999999998854211110 00000000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCCh---hhhcCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTK---EMQEKST 228 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~~ 228 (262)
... .++...+ +.+ .....++.++++.+++.. ...++++
T Consensus 66 --~~~--------------~~~~~~t----------------v~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 106 (137)
T PF00005_consen 66 --QDP--------------QLFPGLT----------------VRE-------NESDERIEEVLKKLGLEDLLDRKIGQRA 106 (137)
T ss_dssp --SSH--------------CHHTTSB----------------HHH-------HHHHHHHHHHHHHTTHGGGTGSBGTSCG
T ss_pred --ccc--------------ccccccc----------------ccc-------cccccccccccccccccccccccccccc
Confidence 000 0000000 000 023445777888887653 2223334
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEeEecCCCC
Q psy2689 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTN 259 (262)
Q Consensus 229 ~~LSgGerqRv~LArAL~~~P~lLlLDEPT~ 259 (262)
..||+||||||+|||||+.+|++||||||||
T Consensus 107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999999997
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1e-29 Score=243.97 Aligned_cols=149 Identities=30% Similarity=0.384 Sum_probs=105.9
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+|+++|+++.|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++ .++. +
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~p~~G~i~~~-~~~~----------i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG--QEQPDSGTIKIG-ETVK----------L 389 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEEC-CceE----------E
Confidence 46999999999975 8999999999999999999999999999998 678999999884 3210 0
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....+... .+ ....++ .++.+ .. ...... .....+.
T Consensus 390 ~~v~q~~~------~~----~~~~tv~e~l~~------------------------------~~-~~~~~~--~~~~~~~ 426 (556)
T PRK11819 390 AYVDQSRD------AL----DPNKTVWEEISG------------------------------GL-DIIKVG--NREIPSR 426 (556)
T ss_pred EEEeCchh------hc----CCCCCHHHHHHh------------------------------hc-cccccc--ccHHHHH
Confidence 00111000 00 001110 11110 00 000001 1122355
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 789999996445688899999999999999999999999999999999998
No 311
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-30 Score=242.20 Aligned_cols=166 Identities=21% Similarity=0.271 Sum_probs=109.4
Q ss_pred eEEEeeeeEeeC-CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 59 DIKVENFSLSPC-LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 59 ~i~i~~v~~~~~-~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
.+.++|++.... .++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++........ ...
T Consensus 257 ~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G--~~~p~~G~i~~~g~~~~~~~~~~~------~~~ 328 (501)
T PRK11288 257 RLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYG--ATRRTAGQVYLDGKPIDIRSPRDA------IRA 328 (501)
T ss_pred EEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcC--CCcCCCceEEECCEECCCCCHHHH------HhC
Confidence 478888885421 39999999999999999999999999999998 568999999999987643211100 000
Q ss_pred HHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh--c--CChhcHHHHHHH
Q psy2689 138 RVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK--S--IEADAAEPRARR 212 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~--~~~~~~~~~~~~ 212 (262)
.+.+..+......+ ....+ ..|+.+.. ..... . .........+.+
T Consensus 329 ~i~~~~q~~~~~~~-~~~~tv~e~l~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 378 (501)
T PRK11288 329 GIMLCPEDRKAEGI-IPVHSVADNINISA-----------------------------RRHHLRAGCLINNRWEAENADR 378 (501)
T ss_pred CCEEcCcCHhhCCC-cCCCCHHHHhcccc-----------------------------chhhcccccccChHHHHHHHHH
Confidence 11111111000000 00011 01111000 00000 0 011122356788
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 379 ~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD 428 (501)
T PRK11288 379 FIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428 (501)
T ss_pred HHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCC
Confidence 99999995345788999999999999999999999999999999999998
No 312
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=216.34 Aligned_cols=146 Identities=27% Similarity=0.329 Sum_probs=106.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
|+||+|++|+++|++|||||||||+||||+| +..|++|.|.++|.+..... ..+......+.
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLTG--ll~p~~G~v~V~G~~Pf~~~--------------~~~~~~~~~v~-- 103 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTG--LLLPTSGKVRVNGKDPFRRR--------------EEYLRSIGLVM-- 103 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHhC--ccccCCCeEEecCcCcchhH--------------HHHHHHHHHHh--
Confidence 8899999999999999999999999999998 78999999999998754211 11111111110
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhh-ccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSK-LERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
. +.+- +|..+..+.. .+...+..++.+.-.++...+.+.+++++ ..+.++..
T Consensus 104 ------------g----------qk~ql~Wdlp~~ds~----~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~-~lk~~vr~ 156 (325)
T COG4586 104 ------------G----------QKLQLWWDLPALDSL----EVLKLIYEIPDDEFAERLDFLTEILDLEG-FLKWPVRK 156 (325)
T ss_pred ------------h----------hhheeeeechhhhhH----HHHHHHHhCCHHHHHHHHHHHHHHhcchh-hhhhhhhh
Confidence 0 0000 0111111111 12334455666666778888888899974 56788999
Q ss_pred CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||-|||+|+.||.||+++|+||+|||||-|||
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 99999999999999999999999999999998
No 313
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=9e-30 Score=211.08 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=55.7
Q ss_pred eEEEeeeeEeeC-CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 59 DIKVENFSLSPC-LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 59 ~i~i~~v~~~~~-~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
+|+++|++++|. .++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~ 66 (182)
T cd03215 4 VLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTR 66 (182)
T ss_pred EEEEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEECCc
Confidence 488899999883 28999999999999999999999999999998 678999999999987754
No 314
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.3e-29 Score=241.38 Aligned_cols=177 Identities=25% Similarity=0.307 Sum_probs=110.6
Q ss_pred eeEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc-ccccCchhHHHH
Q psy2689 58 VDIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ-EVEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~-~i~~~~~~~~~~ 130 (262)
.+|+++|++++|+ + ++||+|.+|+++||+|||||||||||++|+| +..|++|+|.+++. .+....
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G--~~~p~~G~i~~~~~~~i~~v~------ 74 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG--VDKEFNGEARPAPGIKVGYLP------ 74 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEecCCCEEEEEe------
Confidence 3588999999997 4 8999999999999999999999999999998 67899999988642 121110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhH--HHHhhhh-hccccccchhH---HHHHHHHHHHhcCCh
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRV--KLLKECS-KLERDESGDNQ---LRLTEVYDELKSIEA 203 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~~~ 203 (262)
+...+. ...+ ..|+.+....... .-+.... .+.. ...+.. .....+...+.....
T Consensus 75 ------Q~~~~~-----------~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 75 ------QEPQLD-----------PTKTVRENVEEGVAEIKDALDRFNEISAKFAE-PDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred ------ccCCCC-----------CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchhhHHHHHHHHHHHHHHHhcCc
Confidence 000000 0011 1111111000000 0000000 0000 000000 001112222222333
Q ss_pred hcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+....++.++++.+|+. . .++++.+|||||||||+|||||+.+|++|||||||||||
T Consensus 137 ~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD 193 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCP-P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193 (552)
T ss_pred chhHHHHHHHHhhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 33456788899999995 3 578899999999999999999999999999999999998
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=1.3e-29 Score=243.04 Aligned_cols=149 Identities=32% Similarity=0.403 Sum_probs=105.6
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.+++ ++. +
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G--~~~p~~G~i~~~~-~~~----------i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG--QEQPDSGTIKIGE-TVK----------L 387 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC--CCCCCCeEEEECC-ceE----------E
Confidence 46999999999975 8999999999999999999999999999998 5789999998843 210 0
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....+... .+ ....++ .++.+ .. ...... ..+.++.
T Consensus 388 ~~v~q~~~------~~----~~~~tv~e~l~~------------------------------~~-~~~~~~--~~~~~~~ 424 (552)
T TIGR03719 388 AYVDQSRD------AL----DPNKTVWEEISG------------------------------GL-DIIQLG--KREVPSR 424 (552)
T ss_pred EEEeCCcc------cc----CCCCcHHHHHHh------------------------------hc-cccccC--cchHHHH
Confidence 00000000 00 001110 11110 00 000011 1122456
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 789999996445688899999999999999999999999999999999998
No 316
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-29 Score=203.83 Aligned_cols=154 Identities=25% Similarity=0.341 Sum_probs=109.2
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
..+|++...+. ++||++.+||.+-|.||||||||||||+|+| +..|.+|+|.+.+..+.......
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaG--Ll~p~~G~v~~~~~~i~~~~~~~-------- 73 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG--LLRPDAGEVYWQGEPIQNVRESY-------- 73 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHc--ccCCCCCeEEecCCCCccchhhH--------
Confidence 34444444443 6778899999999999999999999999998 78999999999988875332110
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.+...++.- ..++..+++ ..+++.+...... ......+.+.++
T Consensus 74 ~~~l~yLGH------------------------~~giK~eLT---------a~ENL~F~~~~~~----~~~~~~i~~Al~ 116 (209)
T COG4133 74 HQALLYLGH------------------------QPGIKTELT---------ALENLHFWQRFHG----SGNAATIWEALA 116 (209)
T ss_pred HHHHHHhhc------------------------cccccchhh---------HHHHHHHHHHHhC----CCchhhHHHHHH
Confidence 011111110 011112222 2233332222121 123456888899
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...|.|+.+||.|||+||+|||..+..+++.||||||++||
T Consensus 117 ~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 117 QVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99997 56889999999999999999999999999999999999998
No 317
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=231.09 Aligned_cols=161 Identities=24% Similarity=0.334 Sum_probs=123.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchh-HHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~-~~~~~~ 132 (262)
.+.+++++|.|++ +|||+|.+||+.||+|.||||||||++||.| ++.|++|+|+++|+++....+. +...-+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G--~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG--LYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC--cccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4789999999987 8999999999999999999999999999998 8999999999999998765433 222222
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
....|...+. +.++ .+|+++..... ....+......+++.
T Consensus 82 GMVhQHF~Lv-----------~~lTV~ENiiLg~e~~----------------------------~~~~~~~~~~~~~i~ 122 (501)
T COG3845 82 GMVHQHFMLV-----------PTLTVAENIILGLEPS----------------------------KGGLIDRRQARARIK 122 (501)
T ss_pred cEEeeccccc-----------cccchhhhhhhcCccc----------------------------cccccCHHHHHHHHH
Confidence 2233322222 2222 35555542110 001123345677899
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
++.+.+||+ -..+.++.+||-|+||||.|-+||..+|++|||||||+-|
T Consensus 123 ~l~~~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVL 171 (501)
T COG3845 123 ELSERYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171 (501)
T ss_pred HHHHHhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999999997 4568889999999999999999999999999999999987
No 318
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.2e-29 Score=205.12 Aligned_cols=163 Identities=24% Similarity=0.361 Sum_probs=120.1
Q ss_pred EEEeeeeEeeCC--------------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCch
Q psy2689 60 IKVENFSLSPCL--------------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD 125 (262)
Q Consensus 60 i~i~~v~~~~~~--------------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~ 125 (262)
++++|++++|.. .|||++++|+.+|+||.||||||||.|||+| ...|++|+|+++++.+...+-
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaG--mi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhc--ccCCCCceEEECCccccccch
Confidence 566777776532 6899999999999999999999999999998 789999999999998865332
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
.. ..+.+ ..+++.+.+..|+.+...+ + +..+...-..+....
T Consensus 83 ~~-------R~k~I---------RMiFQDpnts~NPRl~iGq-----i-----------------Ld~PL~l~T~~~~~~ 124 (267)
T COG4167 83 SF-------RSKRI---------RMIFQDPNTSLNPRLRIGQ-----I-----------------LDFPLRLNTDLEPEQ 124 (267)
T ss_pred Hh-------hhhhe---------eeeecCCccccChhhhhhh-----H-----------------hcchhhhcccCChHH
Confidence 11 11111 1122344455555443211 0 001111112334445
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+++.+-|..+|+-.+..+-+++.||.||||||+|||||+.+|+++|.||..++||
T Consensus 125 R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD 181 (267)
T COG4167 125 RRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181 (267)
T ss_pred HHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhcc
Confidence 667788899999998788888999999999999999999999999999999999998
No 319
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=2.2e-29 Score=212.24 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=86.0
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|++|++++|+||||||||||+++|+| +..|++|+|.++| .+.... +...++
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G--~~~~~~G~i~~~g-~i~~~~------------q~~~l~--------- 78 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLG--ELEKLSGSVSVPG-SIAYVS------------QEPWIQ--------- 78 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhC--cCCCCCCeEEEcC-EEEEEe------------cCchhc---------
Confidence 6778899999999999999999999999998 6789999999987 222111 110010
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhC--CCChhhhcCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL--GFTKEMQEKSTK 229 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~ 229 (262)
+.....|+.+.... ........ +.. ..+.+.+..+ |+.. ..++++.
T Consensus 79 --~~t~~enl~~~~~~-------------------~~~~~~~~---~~~-------~~l~~~~~~~~~~~~~-~~~~~~~ 126 (204)
T cd03250 79 --NGTIRENILFGKPF-------------------DEERYEKV---IKA-------CALEPDLEILPDGDLT-EIGEKGI 126 (204)
T ss_pred --cCcHHHHhccCCCc-------------------CHHHHHHH---HHH-------cCcHHHHHhccCcccc-eecCCCC
Confidence 01111122211000 00000000 000 0011222222 4432 2456688
Q ss_pred CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 230 ~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+||+|||||++|||||+.+|++|||||||++||
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 999999999999999999999999999999998
No 320
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.6e-30 Score=208.83 Aligned_cols=168 Identities=21% Similarity=0.330 Sum_probs=120.0
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec-cccccCchhHHHH-
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE-QEVEASDDSAVNI- 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~-~~i~~~~~~~~~~- 130 (262)
..+.+++++++|++ ++||++.+||.-+|||||||||||++.+|+| ...|+.|+|+|+| .++...+...+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItG--Ktrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG--KTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecc--cCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 45889999999998 8999999999999999999999999999998 6789999999998 7776654332211
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
-+...+|....+...+ ...|+-++.... ..++..+......+.+.++
T Consensus 82 GIGRKFQ~PtVfe~lt----------V~eNLelA~~~~-----------------------k~v~a~L~~r~~~~e~~ri 128 (249)
T COG4674 82 GIGRKFQKPTVFENLT----------VRENLELALNRD-----------------------KSVFASLFARLRAEERRRI 128 (249)
T ss_pred ccCccccCCeehhhcc----------HHHHHHHHhcCC-----------------------cchHHHhhhhcChhHHHHH
Confidence 1111111111111111 112222221110 0122223222233456689
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
.++|+..|+.+ ..++.+..||.|||||+.|+..++++|++|+||||++|+
T Consensus 129 de~La~igL~~-~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGM 178 (249)
T COG4674 129 DELLATIGLGD-ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178 (249)
T ss_pred HHHHHHcccch-hhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCC
Confidence 99999999984 578889999999999999999999999999999999986
No 321
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.2e-29 Score=218.31 Aligned_cols=126 Identities=27% Similarity=0.383 Sum_probs=89.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDD 156 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (262)
|.+|+++||+||||||||||+++|+| +..|++|+|.+++..+..... .... ....
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G--~~~p~~G~i~~~g~~i~~~~q------------~~~~-----------~~~~ 76 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAG--VLKPDEGDIEIELDTVSYKPQ------------YIKA-----------DYEG 76 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC--CCcCCCCeEEECCceEEEecc------------cccC-----------CCCC
Confidence 45899999999999999999999998 678999999998865432110 0000 0000
Q ss_pred hhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHH
Q psy2689 157 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWR 236 (262)
Q Consensus 157 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGer 236 (262)
++ .+++.... .... .....+.++++.+++. ...++++.+||||||
T Consensus 77 tv-----------------------------~e~l~~~~---~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~ 121 (246)
T cd03237 77 TV-----------------------------RDLLSSIT---KDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGEL 121 (246)
T ss_pred CH-----------------------------HHHHHHHh---hhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHH
Confidence 10 00110000 0000 0112356788899997 457888999999999
Q ss_pred HHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 237 MRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 237 qRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||+|||||+.+|++|||||||++||
T Consensus 122 qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 122 QRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999999999999999999999998
No 322
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=2.2e-29 Score=205.92 Aligned_cols=115 Identities=32% Similarity=0.387 Sum_probs=84.6
Q ss_pred EEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHHHh
Q psy2689 61 KVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIVLS 133 (262)
Q Consensus 61 ~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~~~ 133 (262)
+++|+++.|. + ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.+++.. +...
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~~~~~i~~~---------- 69 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGMPEGEDLLFL---------- 69 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCCceEEEE----------
Confidence 4677777773 2 7899999999999999999999999999998 678999999987531 1100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.+. ..+ ...+ +.+.
T Consensus 70 --~q~-------~~~-----~~~t----------------------------------------------------v~~n 83 (166)
T cd03223 70 --PQR-------PYL-----PLGT----------------------------------------------------LREQ 83 (166)
T ss_pred --CCC-------Ccc-----cccc----------------------------------------------------HHHH
Confidence 000 000 0000 0000
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.. + ++.+||||||||++|||||+.+|++|||||||++||
T Consensus 84 l~~-~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD 123 (166)
T cd03223 84 LIY-P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123 (166)
T ss_pred hhc-c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccC
Confidence 000 0 367899999999999999999999999999999998
No 323
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.2e-29 Score=208.84 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=51.6
Q ss_pred EEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 60 IKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 60 i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
|+++|+++.|+ . ++||+|.+|++++|+||||||||||+++|+|.....|++|+|.++++++
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 66777777774 2 7888999999999999999999999999998422358999999998876
No 324
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=9.8e-29 Score=241.99 Aligned_cols=145 Identities=29% Similarity=0.402 Sum_probs=106.4
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~ 130 (262)
..|+++|+++.|++ ++||+|.+|+++||+|||||||||||++|+| +..|++|+|.+.+.. +...
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G--ll~p~~G~I~~~~~~~igyv------- 577 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG--ELQPSSGTVFRSAKVRMAVF------- 577 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCceEEECCceeEEEE-------
Confidence 36899999999952 8999999999999999999999999999998 678999999875421 1100
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.+. . . .... ..+..+ . .... .. .....+
T Consensus 578 -----~Q~-------~-~-----~~l~~~~~~~~--------------------------~---~~~~---~~-~~~~~~ 606 (718)
T PLN03073 578 -----SQH-------H-V-----DGLDLSSNPLL--------------------------Y---MMRC---FP-GVPEQK 606 (718)
T ss_pred -----ecc-------c-c-----ccCCcchhHHH--------------------------H---HHHh---cC-CCCHHH
Confidence 000 0 0 0000 000000 0 0000 00 112356
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+|+.+|+.....++++.+|||||||||+|||||+.+|++|||||||||||
T Consensus 607 i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 607 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred HHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 78899999997556788999999999999999999999999999999999998
No 325
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=200.58 Aligned_cols=172 Identities=26% Similarity=0.373 Sum_probs=112.2
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.+++.++++.|++ ++||++.+||+.||||.+||||||||+||++ -..|++|+|.|...+-...+.-.+
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~--rl~p~~G~v~Y~~r~~~~~dl~~m----- 78 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISG--RLTPDAGTVTYRMRDGQPRDLYTM----- 78 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhc--ccCCCCCeEEEEcCCCCchhHhhh-----
Confidence 4789999999986 8999999999999999999999999999998 468999999996543211110000
Q ss_pred hhHHHHHHHH-HhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLK-ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~-~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...++..+.. +-..+.+ .+. ..+.+ ....-.+..+++..+-.++. ....+.+.+
T Consensus 79 sEaeRR~L~RTeWG~VhQ---nP~--DGLRm----------------~VSAG~NiGERlma~G~RHY----G~iR~~a~~ 133 (258)
T COG4107 79 SEAERRRLLRTEWGFVHQ---NPR--DGLRM----------------QVSAGGNIGERLMAIGARHY----GNIRAEAQD 133 (258)
T ss_pred chHHHHHHhhhccceeec---Ccc--cccee----------------eeccCCccchhHHhhhhhhh----hhHHHHHHH
Confidence 0011111110 0000000 000 00000 00000111122222111111 135667889
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||+.+.++....+..+.++|||||||+.|||-|+..|.++++||||.|||
T Consensus 134 WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLD 183 (258)
T COG4107 134 WLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183 (258)
T ss_pred HHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcc
Confidence 99999987666666788999999999999999999999999999999998
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=3.5e-29 Score=262.86 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=115.3
Q ss_pred eeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
-+|+++|+++.|++ ++||+|.+||++||+||||||||||+|+|+| +..|++|+|.++|.++... ...
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~G--ll~ptsG~I~i~G~~i~~~-~~~--- 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--DTTVTSGDATVAGKSILTN-ISD--- 2009 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEECCEECcch-HHH---
Confidence 35899999999963 8999999999999999999999999999998 6789999999999887321 000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
..+.+.+..|...+ ....+ ..+++. .+..+........+..+
T Consensus 2010 ----~r~~IGy~pQ~~~L----~~~LT-----------------------------v~E~L~-l~a~l~g~~~~~~~~~v 2051 (2272)
T TIGR01257 2010 ----VHQNMGYCPQFDAI----DDLLT-----------------------------GREHLY-LYARLRGVPAEEIEKVA 2051 (2272)
T ss_pred ----HhhhEEEEeccccC----CCCCC-----------------------------HHHHHH-HHHHhcCCCHHHHHHHH
Confidence 00111111110000 00011 111121 11222223333345567
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++++|||||||||+||+||+.+|+||||||||+|||
T Consensus 2052 ~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLD 2102 (2272)
T TIGR01257 2052 NWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102 (2272)
T ss_pred HHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 8899999997 46789999999999999999999999999999999999999
No 327
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=4.3e-29 Score=262.18 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=115.3
Q ss_pred eeEEEeeeeEeeC--C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 58 VDIKVENFSLSPC--L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~--~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
..|+++|+++.|+ + ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|.++... ....
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaG--Ll~PtsG~I~i~G~dI~~~-~~~~-- 1001 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTG--LLPPTSGTVLVGGKDIETN-LDAV-- 1001 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhc--CCCCCceEEEECCEECcch-HHHH--
Confidence 4689999999994 2 8999999999999999999999999999998 6789999999999887421 0000
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
++.+.+..|... +++..+ ..+++.. ...+........+.++
T Consensus 1002 -----r~~IG~~pQ~~~------------------------L~~~LT---------V~E~L~f-~~~lkg~~~~~~~~~v 1042 (2272)
T TIGR01257 1002 -----RQSLGMCPQHNI------------------------LFHHLT---------VAEHILF-YAQLKGRSWEEAQLEM 1042 (2272)
T ss_pred -----hhcEEEEecCCc------------------------CCCCCC---------HHHHHHH-HHHhcCCCHHHHHHHH
Confidence 000111100000 000111 1112211 1122222233445678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. +..++++++|||||||||+|||||+.+|+||||||||+|||
T Consensus 1043 ~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLD 1093 (2272)
T TIGR01257 1043 EAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093 (2272)
T ss_pred HHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 8999999997 46788899999999999999999999999999999999999
No 328
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=2.9e-29 Score=210.10 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=53.2
Q ss_pred EEEeeeeEeeC-------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc--cCCceeEEEeccccc
Q psy2689 60 IKVENFSLSPC-------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA--IPSSIDLLYCEQEVE 121 (262)
Q Consensus 60 i~i~~v~~~~~-------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~--~p~~g~i~~~~~~i~ 121 (262)
|+++|+++.|+ . ++||+|.+|++++|+||||||||||+++|+| +. .|.+|+|.++|+++.
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G--l~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG--RRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCCceEEEECCEeCc
Confidence 67788888874 2 7899999999999999999999999999998 56 899999999998763
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.2e-28 Score=237.09 Aligned_cols=143 Identities=26% Similarity=0.352 Sum_probs=105.6
Q ss_pred eeEEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 58 VDIKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 58 ~~i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
..++++|+++.|++ ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++ ..+..
T Consensus 339 ~~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~G--l~~p~~G~I~~~-~~i~y----------- 404 (590)
T PRK13409 339 TLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG--VLKPDEGEVDPE-LKISY----------- 404 (590)
T ss_pred eEEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEEe-eeEEE-----------
Confidence 46899999999975 7899999999999999999999999999998 678999999875 22211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..|.... ....++ .+++.... .... ....+.++
T Consensus 405 -~~Q~~~~-----------~~~~tv-----------------------------~e~l~~~~---~~~~---~~~~~~~~ 437 (590)
T PRK13409 405 -KPQYIKP-----------DYDGTV-----------------------------EDLLRSIT---DDLG---SSYYKSEI 437 (590)
T ss_pred -ecccccC-----------CCCCcH-----------------------------HHHHHHHh---hhcC---hHHHHHHH
Confidence 0010000 001110 01111000 0011 12246788
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 438 L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 438 IKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred HHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 9999997 56789999999999999999999999999999999999999
No 330
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=6.6e-29 Score=212.30 Aligned_cols=142 Identities=31% Similarity=0.359 Sum_probs=94.6
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhc
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEAS 154 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (262)
|+|.+|+++||+||||||||||+++|+| +..|++|+|.++|.++... ...+.+..+...+. ...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G--~~~~~~G~i~~~g~~~~~~------------~~~i~~v~q~~~~~--~~~ 64 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKG------------WRHIGYVPQRHEFA--WDF 64 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCccchHh------------hCcEEEeccccccc--CCC
Confidence 4688999999999999999999999998 6789999999999864210 00011111100000 000
Q ss_pred CchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH-hc--CChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 155 DDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-KS--IEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 155 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
..+ ..+++....... .. ........++.++++.+|+. ...++++.+|
T Consensus 65 ~~t-----------------------------v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 114 (223)
T TIGR03771 65 PIS-----------------------------VAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGEL 114 (223)
T ss_pred Ccc-----------------------------HHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhC
Confidence 000 001110000000 00 01112345688899999997 4567889999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|||||||++|||||+.+|++|||||||++||
T Consensus 115 S~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999999999999999999999999999998
No 331
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=8.3e-29 Score=259.86 Aligned_cols=161 Identities=25% Similarity=0.356 Sum_probs=111.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.+ |+||+|++||++|||||||||||||+++|.| ++.|++|+|.++|.++...+...++..
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r--l~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR--IVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC--cCCCCCceEEECCEecccCCHHHHHhc
Confidence 5999999999953 8999999999999999999999999999998 789999999999999987766555433
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+...|+....... . .++++.++ ...+.
T Consensus 1315 IsiVpQdp~LF-----------~GTIreNLd~~~~~t-------------------d---eei~~Al~-------~a~l~ 1354 (1622)
T PLN03130 1315 LGIIPQAPVLF-----------SGTVRFNLDPFNEHN-------------------D---ADLWESLE-------RAHLK 1354 (1622)
T ss_pred cEEECCCCccc-----------cccHHHHhCcCCCCC-------------------H---HHHHHHHH-------HcCcH
Confidence 33332222111 112222322110000 0 00111111 11123
Q ss_pred HHHHh--CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAG--LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~--lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+.. .|++....++ ...||||||||++|||||+++|+|||||||||+||
T Consensus 1355 ~~I~~lp~GLdt~Vge~-G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130 1355 DVIRRNSLGLDAEVSEA-GENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred HHHHhCccccCccccCC-CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 33333 2666544433 56799999999999999999999999999999998
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.2e-28 Score=214.59 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=92.3
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEE-----------EeccccccCchhHHHHHHhhhHHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------YCEQEVEASDDSAVNIVLSADKNRVK 140 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (262)
++++ +.+|++++|+||||||||||+++|+| +..|++|+|. ++|+++..... .
T Consensus 19 ~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~G--l~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~--------------~ 81 (255)
T cd03236 19 RLPV-PREGQVLGLVGPNGIGKSTALKILAG--KLKPNLGKFDDPPDWDEILDEFRGSELQNYFT--------------K 81 (255)
T ss_pred cCCC-CCCCCEEEEECCCCCCHHHHHHHHhC--CcCCCCceEeeccccchhhhhccCchhhhhhH--------------H
Confidence 4553 79999999999999999999999998 7899999997 44444311000 0
Q ss_pred HHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCC
Q psy2689 141 LLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT 220 (262)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~ 220 (262)
.......+..... ... ..+. + ...++. ..+ .....+..+.++++.+|+.
T Consensus 82 ~~~~~~~i~~~~~-~~~--------------~~~~-~---------~~~~i~---~~l---~~~~~~~~~~~~l~~~gl~ 130 (255)
T cd03236 82 LLEGDVKVIVKPQ-YVD--------------LIPK-A---------VKGKVG---ELL---KKKDERGKLDELVDQLELR 130 (255)
T ss_pred hhhcccceeeecc-hhc--------------cCch-H---------HHHHHH---HHh---chhHHHHHHHHHHHHcCCc
Confidence 0000000000000 000 0000 0 000111 011 1122345678899999997
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 221 ~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
. ..++.+.+||||||||++|||||+.+|+++||||||++||
T Consensus 131 ~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD 171 (255)
T cd03236 131 H-VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred h-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 4 5678899999999999999999999999999999999998
No 333
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=6.5e-29 Score=259.97 Aligned_cols=161 Identities=25% Similarity=0.351 Sum_probs=109.5
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.. |+||+|++||++|||||||||||||+++|.| ++.|++|+|.++|.++...+...++..
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r--l~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR--IVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 5999999999942 8999999999999999999999999999998 789999999999999977665544332
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+...|+.+..... .+ ++++.++ ...+.
T Consensus 1312 i~iVpQdp~LF-----------~gTIr~NL~~~~~~s-------------------de---ei~~al~-------~a~l~ 1351 (1495)
T PLN03232 1312 LSIIPQSPVLF-----------SGTVRFNIDPFSEHN-------------------DA---DLWEALE-------RAHIK 1351 (1495)
T ss_pred cEEECCCCeee-----------CccHHHHcCCCCCCC-------------------HH---HHHHHHH-------HcCCH
Confidence 22222211111 112222322110000 00 0111111 11122
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |++....+ ....||||||||++|||||+++|+|||||||||+||
T Consensus 1352 ~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD 1403 (1495)
T PLN03232 1352 DVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403 (1495)
T ss_pred HHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 333332 56544333 356799999999999999999999999999999999
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=239.52 Aligned_cols=164 Identities=26% Similarity=0.361 Sum_probs=113.7
Q ss_pred eEEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
+|+++|+++.|. . ++||+|.+||+++|+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G--l~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGC--LDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCeEEEECCEEcCcCCHHHHH
Confidence 588899998883 1 8999999999999999999999999999998 6789999999999987654322110
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
... .+.+.+..+... +++..+ ..+++.... ..........+.+
T Consensus 82 ~~~---~~~i~~v~q~~~------------------------l~~~~t---------v~enl~~~~-~~~~~~~~~~~~~ 124 (648)
T PRK10535 82 QLR---REHFGFIFQRYH------------------------LLSHLT---------AAQNVEVPA-VYAGLERKQRLLR 124 (648)
T ss_pred HHH---hccEEEEeCCcc------------------------cCCCCC---------HHHHHHHHH-HHcCCCHHHHHHH
Confidence 000 000000000000 000000 111111100 0111122334567
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+||+||+||++|||||+.+|++|||||||++||
T Consensus 125 ~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD 176 (648)
T PRK10535 125 AQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176 (648)
T ss_pred HHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 88999999997 45788899999999999999999999999999999999998
No 335
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-28 Score=203.60 Aligned_cols=165 Identities=21% Similarity=0.317 Sum_probs=118.2
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+++++|++.+..+ ++||+|.+||+.+|+||||||||||.++|+|..-+.+++|+|+++|++|...+...
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E----- 77 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE----- 77 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH-----
Confidence 5788999888763 89999999999999999999999999999997667899999999999997665432
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCC--hhcHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE--ADAAEPRA 210 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 210 (262)
+.+..++- .++.+.. + +-....+++.......+... ......++
T Consensus 78 ---RAr~GifL------afQ~P~e------i-------------------~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~ 123 (251)
T COG0396 78 ---RARAGIFL------AFQYPVE------I-------------------PGVTNSDFLRAAMNARRGARGILPEFIKEL 123 (251)
T ss_pred ---HHhcCCEE------eecCCcc------C-------------------CCeeHHHHHHHHHHhhhccccccHHHHHHH
Confidence 11111110 0000000 0 00001111111111111100 12345678
Q ss_pred HHHHHhCCCChhhhcCCCC-CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTK-EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~-~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++.++++...++|.+. .||||||+|..|+.+++.+|++.|||||-||||
T Consensus 124 ~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred HHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 8899999999888899875 799999999999999999999999999999998
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=2.1e-28 Score=195.55 Aligned_cols=96 Identities=44% Similarity=0.647 Sum_probs=81.5
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
+++|+++.|++ ++||++.+||+++|+||||||||||+++|+| +..|.+|+|.+++...
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G--~~~~~~G~i~~~~~~~--------------- 64 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG--ELEPDEGIVTWGSTVK--------------- 64 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC--CCCCCceEEEECCeEE---------------
Confidence 56777777764 7899999999999999999999999999998 6789999999875310
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
T Consensus 65 -------------------------------------------------------------------------------- 64 (144)
T cd03221 65 -------------------------------------------------------------------------------- 64 (144)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++. .+||+||+||++|||||+.+|+++||||||++||
T Consensus 65 -i~~~--------~~lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 65 -IGYF--------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred -EEEE--------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 0000 0099999999999999999999999999999998
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=2.4e-28 Score=254.37 Aligned_cols=190 Identities=21% Similarity=0.294 Sum_probs=110.9
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEe-ccccccCchhHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC-EQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~-~~~i~~~~~~~~~ 129 (262)
.|+++||+++|+. ++||+|++|+++||+||||||||||+++|+| ++.|++|+|+++ +.++...+...++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g--l~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER--LYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH--hccCCCCeEEEeCCcchhhCCHHHHH
Confidence 5899999999962 8999999999999999999999999999998 789999999995 5777544433322
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhh----H-HHHhhhh--hccccccch--------------hH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNR----V-KLLKECS--KLERDESGD--------------NQ 188 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~----~-~~~~~~~--~~~~~~~~~--------------~~ 188 (262)
..+ .+..|...+. ..+..+|+.+...... . .++.... ..+...... ..
T Consensus 460 ~~I-------g~V~Q~~~LF----~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 460 SKI-------GVVSQDPLLF----SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred Hhc-------cEecccccch----hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 222 2222221111 1223345444210000 0 0000000 000000000 00
Q ss_pred HHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChh----------hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCC
Q psy2689 189 LRLTEVYDELKSIEADAAEPRARRILAGLGFTKE----------MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258 (262)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT 258 (262)
....+..... .......+..+.++++.+++.+. .......+|||||||||+|||||+.+|+||||||||
T Consensus 529 ~~~~~~l~~~-~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMR-KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcc-cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0000000000 00011123345555555554321 123457789999999999999999999999999999
Q ss_pred CCCC
Q psy2689 259 NHLD 262 (262)
Q Consensus 259 ~~LD 262 (262)
++||
T Consensus 608 SaLD 611 (1466)
T PTZ00265 608 SSLD 611 (1466)
T ss_pred cccC
Confidence 9998
No 338
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=2.2e-28 Score=207.78 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=87.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEE-EeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQ 150 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (262)
|+||+|++|+++||+||||||||||+++|+| +..|++|+|. +++..+... ....+
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~~~sG~i~~~~~~~~~~~-------------~~~~l--------- 60 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCG--LDAPDEGDFIGLRGDALPLG-------------ANSFI--------- 60 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CccCCCCCEEEecCceeccc-------------ccccc---------
Confidence 5677899999999999999999999999998 6789999997 655432100 00000
Q ss_pred hhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCC
Q psy2689 151 VEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTK 229 (262)
Q Consensus 151 ~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 229 (262)
.+..+ ..|+.+ .. ....... ......++..++++. ..++++.
T Consensus 61 --~~~ltv~enl~~------------------------------~~-~~~~~~~---~~~~~~~~~~~~l~~-~~~~~~~ 103 (213)
T PRK15177 61 --LPGLTGEENARM------------------------------MA-SLYGLDG---DEFSHFCYQLTQLEQ-CYTDRVS 103 (213)
T ss_pred --CCcCcHHHHHHH------------------------------HH-HHcCCCH---HHHHHHHHHHhChhH-HhhchHh
Confidence 01111 111111 00 0111111 111122334567763 4678899
Q ss_pred CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 230 ~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.||+|||||++|||||+.+|++|||||||++||
T Consensus 104 ~lS~G~~qrv~la~al~~~p~llllDEP~~~lD 136 (213)
T PRK15177 104 EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD 136 (213)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 999999999999999999999999999999998
No 339
>KOG0056|consensus
Probab=99.95 E-value=7.6e-29 Score=225.30 Aligned_cols=162 Identities=27% Similarity=0.422 Sum_probs=112.0
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++||++.|.. ||||++.+|+.+|||||+|+||||++++|.+ +...++|.|.+|||||.......++..+
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR--ffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR--FFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH--HhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 4899999999964 9999999999999999999999999999998 8899999999999999755444443333
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
+...|...++ .++...|+-+...... + + +++ +.+..+.+++
T Consensus 615 GVVPQDtvLF-----------NdTI~yNIryak~~As-----------------n-e---evy-------aAAkAA~IHd 655 (790)
T KOG0056|consen 615 GVVPQDTVLF-----------NDTILYNIRYAKPSAS-----------------N-E---EVY-------AAAKAAQIHD 655 (790)
T ss_pred CcccCcceee-----------cceeeeheeecCCCCC-----------------h-H---HHH-------HHHHHhhHHH
Confidence 3332222221 2233334333221100 0 0 011 0111122333
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
-+-.| |+.+...+|..+ |||||||||+|||++++.|.+++|||.||+||
T Consensus 656 rIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 656 RILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred HHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 33333 444555666554 99999999999999999999999999999998
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.95 E-value=2.3e-28 Score=223.32 Aligned_cols=166 Identities=26% Similarity=0.419 Sum_probs=121.2
Q ss_pred CCceeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhH
Q psy2689 55 DNSVDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 127 (262)
Q Consensus 55 ~~~~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~ 127 (262)
+..-.+.++++++...+ ++||++.+|+.+|||||||||||||.|+|.| ...|.+|.|.+||-++..++.+.
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG--~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG--IWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHc--ccccCCCcEEecchhhhcCCHHH
Confidence 33446888999887654 8999999999999999999999999999998 78899999999999998887665
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
+-..+.+..|.+.++ +.+.++|+.-..++. +.+ . +...+.-
T Consensus 408 lG~hiGYLPQdVeLF-----------~GTIaeNIaRf~~~~---------------d~~---k----------IieAA~l 448 (580)
T COG4618 408 LGRHIGYLPQDVELF-----------DGTIAENIARFGEEA---------------DPE---K----------VIEAARL 448 (580)
T ss_pred hccccCcCcccceec-----------CCcHHHHHHhccccC---------------CHH---H----------HHHHHHH
Confidence 544333333333322 233444443322110 000 0 0011223
Q ss_pred HHHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+++++-.+ |+++...+. -..||||||||++|||||..+|.+++||||-++||
T Consensus 449 AgvHelIl~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD 504 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLD 504 (580)
T ss_pred cChHHHHHhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcc
Confidence 4577777766 888776655 45799999999999999999999999999999998
No 341
>PLN03211 ABC transporter G-25; Provisional
Probab=99.95 E-value=1.6e-28 Score=239.00 Aligned_cols=155 Identities=27% Similarity=0.362 Sum_probs=104.5
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC--CceeEEEeccccccCchhHHHHHHh
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP--SSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p--~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.++|++++|++ |+|+++++||++||+||||||||||+++|+|. ..| .+|+|.++|+++... .
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~--~~~~~~sG~I~inG~~~~~~----~----- 138 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR--IQGNNFTGTILANNRKPTKQ----I----- 138 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEEEECCEECchh----h-----
Confidence 35677778865 89999999999999999999999999999983 445 489999999876210 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCChhcHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEADAAEPRA 210 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 210 (262)
.+.+.+..|...+ .+..+ ..+++.. ...+. .....+...++
T Consensus 139 --~~~i~yv~Q~~~l----~~~lT-----------------------------V~E~l~~-~a~~~~~~~~~~~~~~~~v 182 (659)
T PLN03211 139 --LKRTGFVTQDDIL----YPHLT-----------------------------VRETLVF-CSLLRLPKSLTKQEKILVA 182 (659)
T ss_pred --ccceEEECccccc----CCcCC-----------------------------HHHHHHH-HHHhCCCCCCCHHHHHHHH
Confidence 0011111111000 00111 1111110 01111 11122334568
Q ss_pred HHHHHhCCCChhh----hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEM----QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~----~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+|+.+.. .++.+..|||||||||+|||||+.+|+||||||||+|||
T Consensus 183 ~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 8899999996421 245678899999999999999999999999999999999
No 342
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.4e-29 Score=212.49 Aligned_cols=145 Identities=26% Similarity=0.426 Sum_probs=101.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
+++|+++.-.++||.|+||||||||+|||+| +..|+.|.|.++|.-+....... .+.....++.+.+|...
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaG--L~rPdeG~I~lngr~L~Ds~k~i---~lp~~~RriGYVFQDAR---- 86 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAG--LTRPDEGRIELNGRVLVDAEKGI---FLPPEKRRIGYVFQDAR---- 86 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhc--cCCccccEEEECCEEeecccCCc---ccChhhheeeeEeeccc----
Confidence 6777887768999999999999999999998 78999999999998764332211 01111112222222211
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
+++.+++..+ ..+. + ..........+...+|+. +..+|+|..|
T Consensus 87 --------------------LFpH~tVrgN-------L~YG--------~-~~~~~~~fd~iv~lLGI~-hLL~R~P~~L 129 (352)
T COG4148 87 --------------------LFPHYTVRGN-------LRYG--------M-WKSMRAQFDQLVALLGIE-HLLDRYPGTL 129 (352)
T ss_pred --------------------cccceEEecc-------hhhh--------h-cccchHhHHHHHHHhCcH-HHHhhCCCcc
Confidence 1222221111 1110 0 001234567788899997 6889999999
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
||||||||+|+|||+..|++|+||||.++||
T Consensus 130 SGGEkQRVAIGRALLt~P~LLLmDEPLaSLD 160 (352)
T COG4148 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred CcchhhHHHHHHHHhcCCCeeeecCchhhcc
Confidence 9999999999999999999999999999998
No 343
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=3e-28 Score=255.32 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=110.5
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.. |+||+|++||++||||++|||||||+++|.| ++.|++|+|.++|.++...+...++..
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r--l~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR--INESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc--CccCCCCeEEECCEEccccCHHHHHhc
Confidence 5999999999953 8999999999999999999999999999998 789999999999999987766554433
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ ..+...|+....... .+ +++..++ ...+.
T Consensus 1362 i~iVpQdp~LF-----------~gTIr~NLdp~~~~s-------------------de---ei~~al~-------~a~l~ 1401 (1522)
T TIGR00957 1362 ITIIPQDPVLF-----------SGSLRMNLDPFSQYS-------------------DE---EVWWALE-------LAHLK 1401 (1522)
T ss_pred CeEECCCCccc-----------CccHHHHcCcccCCC-------------------HH---HHHHHHH-------HcCcH
Confidence 33222221111 112222221100000 00 0111111 11123
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |++....+ ....||||||||++|||||+++|+||||||||++||
T Consensus 1402 ~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD 1453 (1522)
T TIGR00957 1402 TFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453 (1522)
T ss_pred HHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 333333 66554433 346799999999999999999999999999999998
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=4.1e-28 Score=200.05 Aligned_cols=95 Identities=31% Similarity=0.392 Sum_probs=77.5
Q ss_pred eeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHH
Q psy2689 64 NFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRV 139 (262)
Q Consensus 64 ~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~ 139 (262)
|++++|++ +-+|+|++|++++|+||||||||||+++|+| +..|++|+|.+++.++....
T Consensus 5 ~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~--------------- 67 (177)
T cd03222 5 DCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAG--QLIPNGDNDEWDGITPVYKP--------------- 67 (177)
T ss_pred CeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHc--CCCCCCcEEEECCEEEEEEc---------------
Confidence 45555544 1246899999999999999999999999998 67899999999875431100
Q ss_pred HHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCC
Q psy2689 140 KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGF 219 (262)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl 219 (262)
..
T Consensus 68 -----------------------------------------------------------q~------------------- 69 (177)
T cd03222 68 -----------------------------------------------------------QY------------------- 69 (177)
T ss_pred -----------------------------------------------------------cc-------------------
Confidence 00
Q ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 220 TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 220 ~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+ .||||||||++|||||+.+|+++||||||++||
T Consensus 70 --------~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 70 --------I-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred --------C-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 0 099999999999999999999999999999998
No 345
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=5.8e-28 Score=253.06 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=107.1
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.. |+||+|++||++||||++|||||||+++|.| ++.|++|+|.++|.++...+...++..
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr--l~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR--MVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 5999999999953 8999999999999999999999999999998 789999999999999977665444332
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+...|+... ....++.+.
T Consensus 1386 I~iVpQdp~LF-----------~gTIreNIdp~--------------------------------------~~~sdeeI~ 1416 (1560)
T PTZ00243 1386 FSMIPQDPVLF-----------DGTVRQNVDPF--------------------------------------LEASSAEVW 1416 (1560)
T ss_pred ceEECCCCccc-----------cccHHHHhCcc--------------------------------------cCCCHHHHH
Confidence 22222211111 11111222110 001112233
Q ss_pred HHHHhC-----------CCChhhhcCCCCCCCHHHHHHHHHHHHHccC-CCEeEecCCCCCCC
Q psy2689 212 RILAGL-----------GFTKEMQEKSTKEFSGGWRMRVSLARALFLE-PTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l-----------gl~~~~~~~~~~~LSgGerqRv~LArAL~~~-P~lLlLDEPT~~LD 262 (262)
++++.. |++....+ ....||||||||++|||||+++ |+|||||||||+||
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD 1478 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCC
Confidence 333333 44443333 3467999999999999999996 89999999999998
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3e-28 Score=234.36 Aligned_cols=149 Identities=26% Similarity=0.378 Sum_probs=99.2
Q ss_pred eeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEE-----------EeccccccCchhH
Q psy2689 65 FSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------YCEQEVEASDDSA 127 (262)
Q Consensus 65 v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~-----------~~~~~i~~~~~~~ 127 (262)
++++|+. +++ .+.+|+++||+||||||||||+|+|+| +..|+.|+|. |+|.++...
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G--~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~---- 151 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSG--ELIPNLGDYEEEPSWDEVLKRFRGTELQNY---- 151 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhC--CccCCCccccCCCcHHHHHHHhCChHHHHH----
Confidence 7788864 678 899999999999999999999999998 6789999997 444443210
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
...... .... +.+... .....+.. . . ..+.+.+.. ....
T Consensus 152 --------------~~~~~~------~~~~---~~~~~q--~~~~~p~~---~-------~---~tv~e~l~~---~~~~ 190 (590)
T PRK13409 152 --------------FKKLYN------GEIK---VVHKPQ--YVDLIPKV---F-------K---GKVRELLKK---VDER 190 (590)
T ss_pred --------------HHHHhc------cCcc---eeeccc--chhhhhhh---h-------c---chHHHHHHh---hhHH
Confidence 000000 0000 000000 00000000 0 0 001111111 1233
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||
T Consensus 191 ~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 191 GKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred HHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 5688899999997 46789999999999999999999999999999999999998
No 347
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=1.1e-27 Score=211.46 Aligned_cols=149 Identities=25% Similarity=0.350 Sum_probs=93.1
Q ss_pred eEEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 59 DIKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 59 ~i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
.|+++|+++.... ++||+|.+|+++||+||||||||||+++|+| +..|.+|+|.++|. +....
T Consensus 39 ~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G--l~~p~~G~I~i~g~-i~yv~----------- 104 (282)
T cd03291 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG--ELEPSEGKIKHSGR-ISFSS----------- 104 (282)
T ss_pred eEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCE-EEEEe-----------
Confidence 4789999886222 8999999999999999999999999999998 67899999998762 22111
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
+...++ ......|+.+.... ........ +.. ..+.+.+.
T Consensus 105 -q~~~l~-----------~~tv~enl~~~~~~-------------------~~~~~~~~---l~~-------~~l~~~l~ 143 (282)
T cd03291 105 -QFSWIM-----------PGTIKENIIFGVSY-------------------DEYRYKSV---VKA-------CQLEEDIT 143 (282)
T ss_pred -Cccccc-----------ccCHHHHhhccccc-------------------CHHHHHHH---HHH-------hCCHHHHH
Confidence 000000 00011111110000 00000000 000 01122222
Q ss_pred hCCCC-hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFT-KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~-~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+... ....++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred hccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 22110 012334578999999999999999999999999999999998
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.7e-27 Score=196.23 Aligned_cols=108 Identities=26% Similarity=0.295 Sum_probs=82.0
Q ss_pred CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHH
Q psy2689 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQ 150 (262)
Q Consensus 71 ~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (262)
.++||+|.+|++++|+|||||||||||++|. +.+|+|.+++... ... .
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il------~~~G~v~~~~~~~-~~~-----------~-------------- 59 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL------YASGKARLISFLP-KFS-----------R-------------- 59 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh------hcCCcEEECCccc-ccc-----------c--------------
Confidence 3677789999999999999999999999985 2578887754311 000 0
Q ss_pred hhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 151 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 151 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
... .+ .. + .++++.+++.....++++.+
T Consensus 60 ---~~~-----~~-------------------------------------~~----q---~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 60 ---NKL-----IF-------------------------------------ID----Q---LQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred ---ccE-----EE-------------------------------------Eh----H---HHHHHHcCCCccccCCCcCc
Confidence 000 00 00 0 35677888864336778999
Q ss_pred CCHHHHHHHHHHHHHccC--CCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLE--PTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~--P~lLlLDEPT~~LD 262 (262)
||||||||++|||||+.+ |++|||||||++||
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 999999999999999999 99999999999998
No 349
>KOG0927|consensus
Probab=99.95 E-value=4.3e-27 Score=216.12 Aligned_cols=148 Identities=32% Similarity=0.357 Sum_probs=109.2
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
..|.++|++|.|.+ +++|-|..++++++|||||||||||||+|+| ...|..|.|.-.......
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~g--dl~p~~G~vs~~~H~~~~--------- 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG--DLQPTIGMVSRHSHNKLP--------- 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhh--ccccccccccccccccch---------
Confidence 34889999999975 7999999999999999999999999999998 568888877654332210
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.+.|..... -++. .+ ..+++ +.........+.++
T Consensus 457 ---------~y~Qh~~e~----ldl~------------------~s---------~le~~------~~~~~~~~~~e~~r 490 (614)
T KOG0927|consen 457 ---------RYNQHLAEQ----LDLD------------------KS---------SLEFM------MPKFPDEKELEEMR 490 (614)
T ss_pred ---------hhhhhhHhh----cCcc------------------hh---------HHHHH------HHhccccchHHHHH
Confidence 111111000 0000 00 00011 01111124456788
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|.++||+.+....++++||+|||.||.+|++++..|.+|||||||||||
T Consensus 491 ~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 491 SILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD 541 (614)
T ss_pred HHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC
Confidence 999999999888899999999999999999999999999999999999998
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=3.4e-27 Score=230.23 Aligned_cols=148 Identities=23% Similarity=0.338 Sum_probs=99.9
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc-cccCchhHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-VEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~-i~~~~~~~~~~~ 131 (262)
.|+++|+++.|+ + ++||+|++||+++|+||||||||||+++|+| +..|++|+|.+++.. +..
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G--l~~~~~G~i~~~~~~~i~~--------- 519 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE--LWPVYGGRLTKPAKGKLFY--------- 519 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCeEeecCCCcEEE---------
Confidence 489999999984 2 8999999999999999999999999999998 678889998775321 110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
..| ...+ . .....+|+.+.... .... .....+.++.
T Consensus 520 ---v~Q-------~~~l---~-~~tv~eni~~~~~~----------------------------~~~~--~~~~~~~~i~ 555 (659)
T TIGR00954 520 ---VPQ-------RPYM---T-LGTLRDQIIYPDSS----------------------------EDMK--RRGLSDKDLE 555 (659)
T ss_pred ---ECC-------CCCC---C-CcCHHHHHhcCCCh----------------------------hhhh--ccCCCHHHHH
Confidence 000 0000 0 01111222211000 0000 0001233456
Q ss_pred HHHHhCCCChhhhcCC---------CCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKS---------TKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~---------~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+++.+ ..+++ ..+||||||||++|||||+++|++|||||||++||
T Consensus 556 ~~l~~~~l~~-~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD 614 (659)
T TIGR00954 556 QILDNVQLTH-ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVS 614 (659)
T ss_pred HHHHHcCCHH-HHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 6777777753 23333 37899999999999999999999999999999998
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.1e-27 Score=188.24 Aligned_cols=157 Identities=31% Similarity=0.407 Sum_probs=112.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc--cCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA--IPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~--~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
++.++||+...++ ++||+|.+||++.|+||+|||||||+..+.|. +. ..-+|+++++++++...+..
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~-La~~F~~~G~~~l~~~~l~~lPa~----- 75 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA-LAGQFSCTGELWLNEQRLDMLPAA----- 75 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhh-cccCcceeeEEEECCeeccccchh-----
Confidence 4678899988776 89999999999999999999999999999983 22 23479999999988654432
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
...+.++.|...+. +.++ ..|+.+.. -..+........+
T Consensus 76 ----qRq~GiLFQD~lLF----phlsVg~Nl~fAl--------------------------------p~~~KG~aRr~~a 115 (213)
T COG4136 76 ----QRQIGILFQDALLF----PHLSVGQNLLFAL--------------------------------PATLKGNARRNAA 115 (213)
T ss_pred ----hhheeeeecccccc----cccccccceEEec--------------------------------CcccccHHHHhhH
Confidence 11222222222111 0011 11222211 0112233445567
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...|++.|++. ..++.+.+||||||-||+|-|+|+..|+.|+||||+|.||
T Consensus 116 ~aAL~~~gL~g-~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD 166 (213)
T COG4136 116 NAALERSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166 (213)
T ss_pred HHHHHHhccch-hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHH
Confidence 78899999984 5778899999999999999999999999999999999987
No 352
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=3.7e-27 Score=246.55 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=104.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++||+++|.. |+||+|++||++||||+||||||||+++|+| ++. .+|+|.++|.++...+...++..
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~r--l~~-~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLR--LLS-TEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhh--hcC-CCcEEEECCEEcccCCHHHHHhc
Confidence 5899999999953 8999999999999999999999999999998 444 78999999999976655443322
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....|...++ +.+...|+... ....++++.
T Consensus 1294 is~IpQdp~LF-----------~GTIR~NLdp~--------------------------------------~~~tdeei~ 1324 (1490)
T TIGR01271 1294 FGVIPQKVFIF-----------SGTFRKNLDPY--------------------------------------EQWSDEEIW 1324 (1490)
T ss_pred eEEEeCCCccC-----------ccCHHHHhCcc--------------------------------------cCCCHHHHH
Confidence 22221111111 11111222100 001122344
Q ss_pred HHHHhCC-----------CChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLG-----------FTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lg-----------l~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++|+.++ ++....+ ....||||||||++|||||+++|+||||||||++||
T Consensus 1325 ~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1325 KVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred HHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 4444444 3333222 234799999999999999999999999999999998
No 353
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.94 E-value=1.9e-27 Score=214.04 Aligned_cols=132 Identities=30% Similarity=0.480 Sum_probs=89.4
Q ss_pred EECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhh
Q psy2689 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLS 164 (262)
Q Consensus 85 LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~ 164 (262)
|+||||||||||+++|+| +..|++|+|.++|+++...... ...+.+..+...+ .+..+
T Consensus 1 l~G~nGsGKSTLl~~iaG--l~~p~~G~I~i~g~~i~~~~~~---------~~~i~~v~q~~~l----~~~~t------- 58 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG--FEQPDSGSIMLDGEDVTNVPPH---------LRHINMVFQSYAL----FPHMT------- 58 (325)
T ss_pred CcCCCCCCHHHHHHHHHC--CCCCCceEEEECCEECCCCCHH---------HCCEEEEecCccc----cCCCc-------
Confidence 689999999999999998 6789999999999887432110 0001111110000 00111
Q ss_pred hhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHH
Q psy2689 165 ADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARA 244 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArA 244 (262)
..+++.... ............++.++++.+|+. ...++++.+|||||||||+||||
T Consensus 59 ----------------------v~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalara 114 (325)
T TIGR01187 59 ----------------------VEENVAFGL-KMRKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARA 114 (325)
T ss_pred ----------------------HHHHHHHHH-hhcCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHH
Confidence 111111111 111122223345688899999997 46788899999999999999999
Q ss_pred HccCCCEeEecCCCCCCC
Q psy2689 245 LFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 245 L~~~P~lLlLDEPT~~LD 262 (262)
|+.+|++|||||||++||
T Consensus 115 L~~~p~lllLDEP~s~LD 132 (325)
T TIGR01187 115 LVFKPKILLLDEPLSALD 132 (325)
T ss_pred HHhCCCEEEEeCCCccCC
Confidence 999999999999999998
No 354
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-27 Score=213.03 Aligned_cols=162 Identities=26% Similarity=0.386 Sum_probs=117.3
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+.+.+|++.|.. ++||+++.|+.+++|||+|+||||++++|.+ ++.+++|.|.++||++.......++..+
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR--FyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR--FYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH--HhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 4889999999976 8999999999999999999999999999998 8999999999999998655444444444
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
+...|...++. ++...|+.+..... + . .++ ......+++..
T Consensus 340 g~VPQDtvLFN-----------Dti~yni~ygr~~a---------------t--~----eev-------~aaa~~aqi~~ 380 (497)
T COG5265 340 GIVPQDTVLFN-----------DTIAYNIKYGRPDA---------------T--A----EEV-------GAAAEAAQIHD 380 (497)
T ss_pred CcCcccceehh-----------hhHHHHHhccCccc---------------c--H----HHH-------HHHHHHhhhhH
Confidence 44433332221 22223333322110 0 0 000 01122334555
Q ss_pred HHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+ |++.....+..+ |||||||||+|||+++++|++|+|||.||+||
T Consensus 381 fi~~lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsald 431 (497)
T COG5265 381 FIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALD 431 (497)
T ss_pred HHHhCchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhh
Confidence 55554 777667777665 99999999999999999999999999999998
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=187.07 Aligned_cols=106 Identities=44% Similarity=0.661 Sum_probs=83.1
Q ss_pred EeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 62 VENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 62 i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
++++++.|.+ ++||+|.+|++++|+||||||||||+++|+| +..|..|+|.+++.++......
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g--~~~~~~G~i~~~~~~~~~~~~~---------- 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG--LLKPTSGEILIDGKDIAKLPLE---------- 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCccEEEECCEEcccCCHH----------
Confidence 4566776653 7888999999999999999999999999998 5678999999998765321000
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
. +...
T Consensus 70 ---~------------------------------------------------------------------------~~~~ 74 (157)
T cd00267 70 ---E------------------------------------------------------------------------LRRR 74 (157)
T ss_pred ---H------------------------------------------------------------------------HHhc
Confidence 0 0000
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++. .+||+||+||++|||||+.+|+++||||||++||
T Consensus 75 i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD 112 (157)
T cd00267 75 IGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112 (157)
T ss_pred eEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 1111 0199999999999999999999999999999998
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=1.8e-26 Score=239.91 Aligned_cols=158 Identities=21% Similarity=0.279 Sum_probs=109.5
Q ss_pred eeEEEeeeeEeeC----C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc--cCCceeEEEeccccccCchh
Q psy2689 58 VDIKVENFSLSPC----L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA--IPSSIDLLYCEQEVEASDDS 126 (262)
Q Consensus 58 ~~i~i~~v~~~~~----~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~--~p~~g~i~~~~~~i~~~~~~ 126 (262)
..++++||++.|+ . |+|+++.+|+++||+|||||||||||++|+|. .. .|++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~-~~~g~~~~G~I~i~G~~~~~---- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER-VTTGVITGGDRLVNGRPLDS---- 832 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC-CCCCCcceeEEEECCEECCh----
Confidence 3588999999884 1 89999999999999999999999999999994 22 2678999999987631
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCCh
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEA 203 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~ 203 (262)
.. ++.+.+..|...+ ....+ ..+++.. ...++ ....
T Consensus 833 ~~-------~~~i~yv~Q~~~~----~~~~T-----------------------------v~E~L~~-~a~l~~~~~~~~ 871 (1394)
T TIGR00956 833 SF-------QRSIGYVQQQDLH----LPTST-----------------------------VRESLRF-SAYLRQPKSVSK 871 (1394)
T ss_pred hh-------hcceeeecccccC----CCCCC-----------------------------HHHHHHH-HHHhCCCCCCCH
Confidence 00 0111111111000 01111 1111111 01111 1122
Q ss_pred hcHHHHHHHHHHhCCCChhhhcCCCC----CCCHHHHHHHHHHHHHccCCC-EeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEMQEKSTK----EFSGGWRMRVSLARALFLEPT-LLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~~~~~~~----~LSgGerqRv~LArAL~~~P~-lLlLDEPT~~LD 262 (262)
.+..+++.++++.+|+. +..++.++ .|||||||||+||+||+.+|+ ||||||||+|||
T Consensus 872 ~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 872 SEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 23445788999999997 45677776 799999999999999999997 999999999999
No 357
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.4e-26 Score=188.65 Aligned_cols=151 Identities=28% Similarity=0.362 Sum_probs=98.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
++||+|..|+++.|+|.||||||||+++|+| ...|++|+|.++|+++...+...-...+. .++ |.... -
T Consensus 24 ~~sL~I~~g~FvtViGsNGAGKSTlln~iaG--~l~~t~G~I~Idg~dVtk~~~~~RA~~la------rVf-Qdp~~--g 92 (263)
T COG1101 24 GLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG--DLKPTSGQILIDGVDVTKKSVAKRANLLA------RVF-QDPLA--G 92 (263)
T ss_pred cCceeecCCceEEEEcCCCccHHHHHHHhhC--ccccCCceEEECceecccCCHHHHhhHHH------HHh-cchhh--C
Confidence 7899999999999999999999999999998 57899999999999997654321111110 011 00000 0
Q ss_pred hhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh---hcHHHHHHHHHHhC--CCChhhhc
Q psy2689 152 EASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA---DAAEPRARRILAGL--GFTKEMQE 225 (262)
Q Consensus 152 ~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~l~~l--gl~~~~~~ 225 (262)
..+.++ .+|+.+...... -+.+.. ......-++.+..+ ||.. ..+
T Consensus 93 t~~~lTieENl~la~~Rg~----------------------------~rgl~~~ln~~~~~~f~~~l~~l~lgLen-rL~ 143 (263)
T COG1101 93 TAPELTIEENLALAESRGK----------------------------KRGLSSALNERRRSSFRERLARLGLGLEN-RLS 143 (263)
T ss_pred CcccccHHHHHHHHHhcCc----------------------------ccccchhhhHHHHHHHHHHHhhcccchhh-hhc
Confidence 011222 233333211000 000110 11122233344444 6664 566
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.-|||||||-|+|+.|-++.|+||+|||-|++||
T Consensus 144 ~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALD 180 (263)
T COG1101 144 DRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180 (263)
T ss_pred ChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCC
Confidence 7799999999999999999999999999999999998
No 358
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=4.8e-26 Score=220.88 Aligned_cols=143 Identities=25% Similarity=0.412 Sum_probs=97.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKL 148 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (262)
|+|+++++||+++|+|||||||||||++|+|. ..| .+|+|.++|.++.. ... .+.+.+..|...+
T Consensus 43 ~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~--~~~~~~~~G~i~~~g~~~~~---~~~-------~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFR--SPKGVKGSGSVLLNGMPIDA---KEM-------RAISAYVQQDDLF 110 (617)
T ss_pred CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEECCH---HHH-------hhhceeecccccc
Confidence 77788999999999999999999999999984 344 37999999987631 111 1111111111100
Q ss_pred HHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCChhcHHHHHHHHHHhCCCChhhh
Q psy2689 149 EQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEADAAEPRARRILAGLGFTKEMQ 224 (262)
Q Consensus 149 ~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~ 224 (262)
.+..+ .+|+.+. ..++ ....+....++.++++.+|+.+ ..
T Consensus 111 ----~~~lTV~e~l~f~-------------------------------~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 154 (617)
T TIGR00955 111 ----IPTLTVREHLMFQ-------------------------------AHLRMPRRVTKKEKRERVDEVLQALGLRK-CA 154 (617)
T ss_pred ----CccCcHHHHHHHH-------------------------------HhcCCCCCCCHHHHHHHHHHHHHHcCchh-cC
Confidence 01111 1111111 1111 1122344567899999999974 45
Q ss_pred cCCCC------CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 225 EKSTK------EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~------~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..++ .|||||||||+|||||+.+|++|+|||||+|||
T Consensus 155 ~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD 198 (617)
T TIGR00955 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198 (617)
T ss_pred cCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence 66665 599999999999999999999999999999998
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=1.4e-25 Score=233.26 Aligned_cols=160 Identities=17% Similarity=0.208 Sum_probs=106.4
Q ss_pred eeEEEeeeeEeeC-------------C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 58 VDIKVENFSLSPC-------------L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 58 ~~i~i~~v~~~~~-------------~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
..+.++||++... . |+|+++.+|++++|+|||||||||||++|+|..-.-+.+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 4588899887742 1 899999999999999999999999999999942111468999999876
Q ss_pred cccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh
Q psy2689 120 VEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK 199 (262)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (262)
+.. ...+ ..+.+..|...+ .+..+ ..+++... ..++
T Consensus 946 ~~~---~~~~-------~~igyv~Q~d~~----~~~lT-----------------------------V~E~L~~~-a~lr 981 (1470)
T PLN03140 946 KKQ---ETFA-------RISGYCEQNDIH----SPQVT-----------------------------VRESLIYS-AFLR 981 (1470)
T ss_pred CCh---HHhh-------hheEEEcccccc----CCCCc-----------------------------HHHHHHHH-HHhC
Confidence 521 0000 001111110000 01111 11111110 1111
Q ss_pred ---cCChhcHHHHHHHHHHhCCCChhhhcCCC-----CCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 200 ---SIEADAAEPRARRILAGLGFTKEMQEKST-----KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 200 ---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.....+....+.++++.+|+.+ ..++.+ +.|||||||||+||++|+.+|+||||||||+|||
T Consensus 982 ~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 982 LPKEVSKEEKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 1112233456889999999974 566665 5899999999999999999999999999999999
No 360
>KOG0061|consensus
Probab=99.92 E-value=5.1e-25 Score=212.63 Aligned_cols=146 Identities=27% Similarity=0.429 Sum_probs=102.0
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc-cCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA-IPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQ 150 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~-~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (262)
+||..+++||++||+||+||||||||++|+|+... ...+|+|+++|+..... .. ++...+..|...+
T Consensus 48 ~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~---~~-------~~~s~yV~QdD~l-- 115 (613)
T KOG0061|consen 48 GVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR---SF-------RKISGYVQQDDVL-- 115 (613)
T ss_pred CcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh---hh-------hheeEEEcccccc--
Confidence 78889999999999999999999999999996322 36789999999653211 11 1111111111110
Q ss_pred hhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCChhcHHHHHHHHHHhCCCChhhhcCC
Q psy2689 151 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEADAAEPRARRILAGLGFTKEMQEKS 227 (262)
Q Consensus 151 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 227 (262)
.+..++ .+.+. +.+.++ .....+...+++++++.+|+. ...|..
T Consensus 116 --~~~LTV-----------------------------~EtL~-f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ 162 (613)
T KOG0061|consen 116 --LPTLTV-----------------------------RETLR-FSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTL 162 (613)
T ss_pred --cccccH-----------------------------HHHHH-HHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccce
Confidence 011111 11110 112222 123456778899999999998 567777
Q ss_pred CC-----CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 228 TK-----EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 228 ~~-----~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++ .+|||||+||+||.-|+++|.||+|||||+|||
T Consensus 163 ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 163 IGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred ecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 75 599999999999999999999999999999999
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=9.5e-25 Score=187.03 Aligned_cols=52 Identities=29% Similarity=0.348 Sum_probs=47.0
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
.++++.+++.....++++.+|||||||||+|||||+.+| ++|||||||++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD 171 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence 568999999743468889999999999999999999998 5999999999998
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=5.1e-25 Score=231.48 Aligned_cols=148 Identities=24% Similarity=0.311 Sum_probs=98.7
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc-eeEEEeccccccCchhHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS-IDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~-g~i~~~~~~i~~~~~~~~~ 129 (262)
.|.++|++++|.. |+||+|++|++++|+||+|||||||+++|.| ...|.+ |+|.+.+. +..
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG--~~~~~~GG~I~l~~~-Iay------- 683 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG--ELPPRSDASVVIRGT-VAY------- 683 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHH--hhccCCCceEEEcCe-EEE-------
Confidence 4899999999951 8999999999999999999999999999998 577888 78765331 111
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
..|... + ...+..+|+.+..... .+.+..+.+.+ .
T Consensus 684 -----v~Q~p~-------L----fngTIreNI~fg~~~d-------------------~e~y~~vl~a~----------~ 718 (1622)
T PLN03130 684 -----VPQVSW-------I----FNATVRDNILFGSPFD-------------------PERYERAIDVT----------A 718 (1622)
T ss_pred -----EcCccc-------c----CCCCHHHHHhCCCccc-------------------HHHHHHHHHHh----------C
Confidence 111111 1 0223334555432110 01111111111 1
Q ss_pred HHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+.++.+ |..+...++ ...|||||||||+||||+..+|+|||||||||+||
T Consensus 719 L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 719 LQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred cHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 12223333 555555555 45699999999999999999999999999999999
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=7e-25 Score=229.76 Aligned_cols=149 Identities=23% Similarity=0.282 Sum_probs=96.1
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++|++++|.. |+||+|++|+.++|+||+|||||||+++|.| ...|.+|.+......+..
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG--~~~~~~G~i~~~~~~Iay-------- 683 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG--ELSHAETSSVVIRGSVAY-------- 683 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCcccCCCEEEecCcEEE--------
Confidence 4889999999852 8999999999999999999999999999998 577877754322222211
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
..|...++ ..+..+|+.+..... .+.+..+.+.+ ..
T Consensus 684 ----v~Q~p~Lf-----------~gTIreNI~fg~~~~-------------------~e~~~~vl~~~----------~L 719 (1495)
T PLN03232 684 ----VPQVSWIF-----------NATVRENILFGSDFE-------------------SERYWRAIDVT----------AL 719 (1495)
T ss_pred ----EcCccccc-----------cccHHHHhhcCCccC-------------------HHHHHHHHHHh----------CC
Confidence 11111111 122334544431100 01111111111 01
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++.+ |+++...++ ...||||||||++||||+..+|+|||||||||+||
T Consensus 720 ~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 720 QHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred HHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 1112222 554445555 45699999999999999999999999999999999
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=1e-24 Score=228.83 Aligned_cols=148 Identities=24% Similarity=0.294 Sum_probs=97.4
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|.++|+++.|+. |+||+|++|++++|+||||||||||+++|+| ...|.+|+|.++|. +...
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g--~~~~~~G~i~~~g~-i~yv-------- 704 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA--EMDKVEGHVHMKGS-VAYV-------- 704 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCccCCcEEEECCE-EEEE--------
Confidence 5899999999952 8999999999999999999999999999998 67899999988762 2211
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.|...++ ..+..+|+.+..... .+.+..+...+ ...
T Consensus 705 ----~Q~~~l~-----------~~Ti~eNI~~g~~~~-------------------~~~~~~~~~~~----------~l~ 740 (1522)
T TIGR00957 705 ----PQQAWIQ-----------NDSLRENILFGKALN-------------------EKYYQQVLEAC----------ALL 740 (1522)
T ss_pred ----cCCcccc-----------CCcHHHHhhcCCccC-------------------HHHHHHHHHHh----------CCH
Confidence 1110000 112223333321000 00000000000 011
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+..+ |..+.. .....+||||||||++||||+..+|+++||||||++||
T Consensus 741 ~~l~~~~~g~~t~i-g~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 741 PDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred HHHHhcCCCCCcee-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 112222 333333 34467899999999999999999999999999999999
No 365
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=4.6e-24 Score=180.23 Aligned_cols=134 Identities=25% Similarity=0.349 Sum_probs=100.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
||||++.+||++||||+||||||||+|+|+| .+.|++|+|.+.|.-....... ..
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaG--i~~Pt~G~v~v~G~v~~li~lg------------~G----------- 99 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG--IYKPTSGKVKVTGKVAPLIELG------------AG----------- 99 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhC--ccCCCCceEEEcceEehhhhcc------------cC-----------
Confidence 8999999999999999999999999999998 7999999999987632111000 00
Q ss_pred hhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC
Q psy2689 152 EASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230 (262)
Q Consensus 152 ~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 230 (262)
.++..+ .+|+.+.+ .+..+...+.++++.++.+.-.|. +..+.|+++
T Consensus 100 f~pelTGreNi~l~~-------------------------------~~~G~~~~ei~~~~~eIieFaELG-~fi~~Pvkt 147 (249)
T COG1134 100 FDPELTGRENIYLRG-------------------------------LILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKT 147 (249)
T ss_pred CCcccchHHHHHHHH-------------------------------HHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhh
Confidence 011121 23333321 122333445667777877776765 568999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|-||+-|+++|-|...+|++||+||-.+.-|
T Consensus 148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 99999999999999999999999999988765
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=9.4e-25 Score=227.16 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=94.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCC--cccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRA--LAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLE 149 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~--~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (262)
|+|+.+++||+++|+||||||||||||+|+|.. ...|.+|+|.++|.++...... .++.+.+..|...+
T Consensus 79 ~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~--------~r~~i~yv~Q~d~~- 149 (1394)
T TIGR00956 79 PMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH--------YRGDVVYNAETDVH- 149 (1394)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhh--------cCceeEEecccccc-
Confidence 788899999999999999999999999999942 1357899999999875311000 00001111110000
Q ss_pred HhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-------cCChhcHH-HHHHHHHHhCCCCh
Q psy2689 150 QVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAE-PRARRILAGLGFTK 221 (262)
Q Consensus 150 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~-~~~~~~l~~lgl~~ 221 (262)
.+..++ .+++... ..++ .....+.. ..++.+++.+|+.+
T Consensus 150 ---~~~lTV-----------------------------~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 196 (1394)
T TIGR00956 150 ---FPHLTV-----------------------------GETLDFA-ARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH 196 (1394)
T ss_pred ---CCCCCH-----------------------------HHHHHHH-HHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc
Confidence 011111 1111110 0111 01111112 22456899999973
Q ss_pred hhhcC-----CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 222 EMQEK-----STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 222 ~~~~~-----~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++ .+..|||||||||+||+||+.+|+||+|||||+|||
T Consensus 197 -~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD 241 (1394)
T TIGR00956 197 -TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241 (1394)
T ss_pred -ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 3443 457899999999999999999999999999999999
No 367
>KOG0059|consensus
Probab=99.90 E-value=1.9e-23 Score=209.47 Aligned_cols=161 Identities=26% Similarity=0.412 Sum_probs=122.4
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchh-HHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~-~~~~ 130 (262)
..+.++++++.|+. +++|.|++||+.|+.|||||||||+++||+| ...|++|++++.|.++...... ...
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG--~~~~t~G~a~i~g~~i~~~~~~~~~~- 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTG--ETKPTSGEALIKGHDITVSTDFQQVR- 639 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhC--CccCCcceEEEecCccccccchhhhh-
Confidence 34778889998865 7999999999999999999999999999998 6899999999998887643211 111
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
+.+++-+|... +++.++ ..+ ...++.+++.+......+.+
T Consensus 640 ------~~iGyCPQ~d~------------------------l~~~lT---------~rE-hL~~~arlrG~~~~di~~~v 679 (885)
T KOG0059|consen 640 ------KQLGYCPQFDA------------------------LWEELT---------GRE-HLEFYARLRGLPRSDIGSAI 679 (885)
T ss_pred ------hhcccCCchhh------------------------hhhhcc---------HHH-HHHHHHHHcCCChhHHHHHH
Confidence 11111111111 111111 111 12355667777666677779
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+++.+++.+ ..+++++.+|||+|+|+++|.||+.+|++++|||||+|+|
T Consensus 680 ~~ll~~~~L~~-~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmD 730 (885)
T KOG0059|consen 680 EKLLRLVGLGP-YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD 730 (885)
T ss_pred HHHHHHcCChh-hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC
Confidence 99999999984 5788899999999999999999999999999999999998
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=5.1e-24 Score=223.13 Aligned_cols=148 Identities=26% Similarity=0.359 Sum_probs=94.7
Q ss_pred eEEEeeeeEeeC---CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 59 DIKVENFSLSPC---LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 59 ~i~i~~v~~~~~---~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
.+.++++++... .|+||+|++|++++|+|||||||||||++|+| +..|.+|+|.++|. +...
T Consensus 428 ~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G--~~~~~~G~i~~~g~-iayv------------ 492 (1490)
T TIGR01271 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG--ELEPSEGKIKHSGR-ISFS------------ 492 (1490)
T ss_pred cccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCE-EEEE------------
Confidence 356677776543 28999999999999999999999999999998 67899999998762 2211
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.|...++ ..+..+|+.+..... ...+..+.. ...+.+.++
T Consensus 493 ~Q~~~l~-----------~~Ti~eNI~~g~~~~-------------------~~~~~~~~~----------~~~L~~~l~ 532 (1490)
T TIGR01271 493 PQTSWIM-----------PGTIKDNIIFGLSYD-------------------EYRYTSVIK----------ACQLEEDIA 532 (1490)
T ss_pred eCCCccC-----------CccHHHHHHhccccc-------------------hHHHHHHHH----------HHhHHHHHH
Confidence 0100000 111223333221000 000000000 001223343
Q ss_pred hC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+ |..+.. ......|||||||||+||||++.+|++|||||||++||
T Consensus 533 ~l~~g~~t~v-g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 533 LFPEKDKTVL-GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred hccccccccc-cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 33 222223 33467899999999999999999999999999999999
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.4e-22 Score=176.56 Aligned_cols=55 Identities=33% Similarity=0.448 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccC---CCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE---PTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~---P~lLlLDEPT~~LD 262 (262)
.++.++|+.+|+.....++++.+|||||+||++|||+|+.+ |+++||||||++||
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD 204 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLH 204 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCC
Confidence 45778899999974346888999999999999999999996 79999999999998
No 370
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1.1e-23 Score=219.03 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=98.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC---ceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKL 148 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~---~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (262)
|+|+.|++|++++|+|||||||||||++|+| ...|+ +|+|.|+|.++..... .+.+.+..|...
T Consensus 183 ~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG--~l~~~~~~~G~I~~nG~~~~~~~~----------~~~i~yv~Q~d~- 249 (1470)
T PLN03140 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGEITYNGYRLNEFVP----------RKTSAYISQNDV- 249 (1470)
T ss_pred CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCCCCcceeEEEECCEechhhcc----------cceeEEeccccc-
Confidence 8999999999999999999999999999998 45666 8999999987632110 011111111100
Q ss_pred HHhhhcCchh-hhHHhhhhhhh----HHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChh-
Q psy2689 149 EQVEASDDSA-VNIVLSADKNR----VKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKE- 222 (262)
Q Consensus 149 ~~~~~~~~~~-~n~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~- 222 (262)
..+..++ +++.+...-.. .....+.+..+..........+..+.... ..........+..+|+.+|+...
T Consensus 250 ---~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~L~~lGL~~~~ 325 (1470)
T PLN03140 250 ---HVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKAT-AMEGVKSSLITDYTLKILGLDICK 325 (1470)
T ss_pred ---CCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHh-hhhcchhhHHHHHHHHHcCCcccc
Confidence 0112222 22222211000 00000000000000000000000000000 00000112346778999999632
Q ss_pred ---hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 223 ---MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 223 ---~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+..+..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 326 ~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLD 368 (1470)
T PLN03140 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368 (1470)
T ss_pred CceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCcc
Confidence 2356678999999999999999999999999999999999
No 371
>KOG0054|consensus
Probab=99.89 E-value=5.3e-23 Score=208.83 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=110.5
Q ss_pred eeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
-.|+++|++.+|.. ++||+|++||++||||+.|||||||+++|-+ +..|.+|+|.+||.|+...+...++.
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR--l~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR--LVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH--hcCccCCeEEEcCeecccccHHHHHh
Confidence 35999999999964 8999999999999999999999999999998 67889999999999998877665543
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+....|...++ +.+...|+ .+++... -.++|+.++ ..+.
T Consensus 1215 rlsIIPQdPvLF-----------sGTvR~NL---------------DPf~e~s-------D~~IW~ALe-------~~~L 1254 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLF-----------SGTVRFNL---------------DPFDEYS-------DDEIWEALE-------RCQL 1254 (1381)
T ss_pred cCeeeCCCCcee-----------cCcccccc---------------CcccccC-------HHHHHHHHH-------HhCh
Confidence 333222211111 11111111 0010000 011222221 1122
Q ss_pred HHHHHh--CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAG--LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~--lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.... .||+....+ .-.+||-||||.++|||||+++++||+|||+|+++|
T Consensus 1255 k~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1255 KDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred HHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 333333 245544333 356799999999999999999999999999999998
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=2.4e-22 Score=211.02 Aligned_cols=135 Identities=26% Similarity=0.368 Sum_probs=88.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
|+||+|++|++++|+|||||||||||++|+| ...|++|+|.+.+ .+... .|. ..+
T Consensus 678 ~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G--~~~~~~G~i~~~~-~i~yv------------~Q~-------~~l--- 732 (1560)
T PTZ00243 678 DVSVSVPRGKLTVVLGATGSGKSTLLQSLLS--QFEISEGRVWAER-SIAYV------------PQQ-------AWI--- 732 (1560)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCcEEEECC-eEEEE------------eCC-------Ccc---
Confidence 8899999999999999999999999999998 6789999987632 22111 010 000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhC--CCChhhhcCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL--GFTKEMQEKSTK 229 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~ 229 (262)
......+|+.+.... ....+.... ....+.+.++.+ |+.+. .+++..
T Consensus 733 -~~~Tv~enI~~~~~~-------------------~~~~~~~~~----------~~~~l~~~l~~l~~g~~t~-i~~~g~ 781 (1560)
T PTZ00243 733 -MNATVRGNILFFDEE-------------------DAARLADAV----------RVSQLEADLAQLGGGLETE-IGEKGV 781 (1560)
T ss_pred -CCCcHHHHHHcCChh-------------------hHHHHHHHH----------HHhhhHHHHHHhhccchHH-hcCCCC
Confidence 011112233221100 000000000 011234455555 66543 455688
Q ss_pred CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 230 ~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|||||||||+|||||+.+|++|||||||++||
T Consensus 782 ~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 999999999999999999999999999999999
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.88 E-value=8e-24 Score=177.66 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHc----cCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF----LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~----~~P~lLlLDEPT~~LD 262 (262)
.++.++++. . ...++++.+||||||||++|||+|+ .+|++|||||||++||
T Consensus 95 ~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 95 GDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred hhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 356666766 2 3456778999999999999999997 4669999999999998
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=1.4e-22 Score=163.06 Aligned_cols=153 Identities=27% Similarity=0.365 Sum_probs=106.4
Q ss_pred eEEEeeeeEeeC-CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHH
Q psy2689 59 DIKVENFSLSPC-LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137 (262)
Q Consensus 59 ~i~i~~v~~~~~-~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~ 137 (262)
.+.+++|...-. +.+|..+..||++-+||||||||||||-.++| ..|.+|+|.+.|.++.......+.
T Consensus 3 l~qln~v~~~tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAG---m~~~sGsi~~~G~~l~~~~~~eLA-------- 71 (248)
T COG4138 3 LMQLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGSGSIQFAGQPLEAWSATELA-------- 71 (248)
T ss_pred eeeeccccccccccccccccccceEEEEECCCCccHHHHHHHHhC---CCCCCceEEECCcchhHHhHhHHH--------
Confidence 466677666532 37788899999999999999999999999998 379999999999988654333221
Q ss_pred HHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh-cCChhcHHHHHHHHHHh
Q psy2689 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-SIEADAAEPRARRILAG 216 (262)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~ 216 (262)
....++.+-..+.+ ...++.++. ..+.......+.++...
T Consensus 72 -----rhRAYLsQqq~p~f----------------------------------~mpV~~YL~L~qP~~~~a~~i~~i~~~ 112 (248)
T COG4138 72 -----RHRAYLSQQQTPPF----------------------------------AMPVWHYLTLHQPDKTRTELLNDVAGA 112 (248)
T ss_pred -----HHHHHHhhccCCcc----------------------------------hhhhhhhhhhcCchHHHHHHHHHHHhh
Confidence 11112211111110 001122221 11223344567778888
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHcc-----C--CCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFL-----E--PTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~-----~--P~lLlLDEPT~~LD 262 (262)
+++++ ...|.+++|||||-|||-||...++ | .++||+|||.|+||
T Consensus 113 L~l~D-KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LD 164 (248)
T COG4138 113 LALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164 (248)
T ss_pred hcccc-hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchh
Confidence 99984 6788899999999999999987765 3 37999999999998
No 375
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=177.66 Aligned_cols=138 Identities=30% Similarity=0.406 Sum_probs=96.0
Q ss_pred ceeEEEeeeeEeeCCCeeEE-----EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-----eEEEeccccccCchh
Q psy2689 57 SVDIKVENFSLSPCLKVQKQ-----IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-----DLLYCEQEVEASDDS 126 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~~isl~-----i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-----~i~~~~~~i~~~~~~ 126 (262)
...++..++++.|+ ++.|+ |..||++|++||||-|||||.++|+| ...|++| +|.|-.|-|...-..
T Consensus 340 ~~lv~y~~~~k~~g-~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG--~ikPdeg~~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDLKKTYG-DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSEEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchheeecC-ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhc--cccCCCCCCccceEeecceeecCCCCC
Confidence 34466667777776 45554 56789999999999999999999998 5778877 345544444322111
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcH
Q psy2689 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAA 206 (262)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (262)
.++.. +.... .. ....
T Consensus 417 tV~~~------------------------------l~~~~--------------------------------~~--~~~~ 432 (591)
T COG1245 417 TVEDL------------------------------LRSAI--------------------------------RS--AFGS 432 (591)
T ss_pred cHHHH------------------------------HHHhh--------------------------------hh--hccc
Confidence 11110 00000 00 0000
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..--.++++.|.+. ...++++..|||||.|||+||.||..++++++||||+++||
T Consensus 433 s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD 487 (591)
T COG1245 433 SYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487 (591)
T ss_pred chhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence 01133567788987 57899999999999999999999999999999999999998
No 376
>KOG0066|consensus
Probab=99.87 E-value=1.1e-22 Score=183.49 Aligned_cols=145 Identities=27% Similarity=0.377 Sum_probs=101.6
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+-+.+|+|.|.+ +++|-|.-..++|||||||.||||||++|.| -..|+.|+..-+-.
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~G--kl~P~~GE~RKnhr-------------- 649 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG--KLDPNDGELRKNHR-------------- 649 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhc--CCCCCcchhhccce--------------
Confidence 3678999999976 7899999999999999999999999999998 46788775433211
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
-++.+|.+...- .+....+ ..+++. +... .....++.
T Consensus 650 ----L~iG~FdQh~~E-~L~~Eet------------------------------p~EyLq----r~FN----lpyq~ARK 686 (807)
T KOG0066|consen 650 ----LRIGWFDQHANE-ALNGEET------------------------------PVEYLQ----RKFN----LPYQEARK 686 (807)
T ss_pred ----eeeechhhhhHH-hhccccC------------------------------HHHHHH----HhcC----CChHHHHH
Confidence 112223222110 0000000 011111 1111 22345778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.|-.||+..+-..-.+..|||||+-||+||-.-+..|+|||||||||+||
T Consensus 687 ~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 687 QLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred HhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 88899997654445688999999999999999999999999999999998
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=2.4e-21 Score=167.28 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=35.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
.++++.+||||||||++|||||+. +|++|||||||++||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld 194 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALD 194 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCC
Confidence 456789999999999999999973 589999999999998
No 378
>KOG0062|consensus
Probab=99.85 E-value=4.6e-21 Score=175.70 Aligned_cols=146 Identities=27% Similarity=0.381 Sum_probs=105.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.+++.+|++.|.. +++++++.-++++++|+||+||||+++++.+. ..|..|.+...+.
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~--l~~~rgi~~~~~r------------- 426 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD--LTPTRGIVGRHPR------------- 426 (582)
T ss_pred eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhcc--CCcccceeeeccc-------------
Confidence 4888999998865 68889999999999999999999999999983 4677776655432
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.++.++.|...- ++ +........+........++.++
T Consensus 427 -----~ri~~f~Qhhvd-~l-------------------------------------~~~v~~vd~~~~~~pG~~~ee~r 463 (582)
T KOG0062|consen 427 -----LRIKYFAQHHVD-FL-------------------------------------DKNVNAVDFMEKSFPGKTEEEIR 463 (582)
T ss_pred -----ceecchhHhhhh-HH-------------------------------------HHHhHHHHHHHHhCCCCCHHHHH
Confidence 112222221110 00 00000111111111112456688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.-|..||++.+...+++..||||||-||++|.+...+|.+|+|||||||||
T Consensus 464 ~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD 514 (582)
T KOG0062|consen 464 RHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD 514 (582)
T ss_pred HHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc
Confidence 889999999988888899999999999999999999999999999999998
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.85 E-value=9.6e-22 Score=185.87 Aligned_cols=145 Identities=26% Similarity=0.346 Sum_probs=95.2
Q ss_pred ceeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc-ccccCchhHHH
Q psy2689 57 SVDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ-EVEASDDSAVN 129 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~-~i~~~~~~~~~ 129 (262)
+..|+++|++..-+. +.+|.|++|+.+-|.||||||||||+|+|+| +-+-.+|+|.+-.. ++...
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG--LWP~g~G~I~~P~~~~~lfl------ 461 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPADSALLFL------ 461 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc--cCccCCCceecCCCCceEEe------
Confidence 356999999998754 8999999999999999999999999999998 44444677655411 11111
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
+|..+++ .+ + +.+....-... .+..++.
T Consensus 462 -------------pQ~PY~p---~G--t---------------------------------Lre~l~YP~~~-~~~~d~~ 489 (604)
T COG4178 462 -------------PQRPYLP---QG--T---------------------------------LREALCYPNAA-PDFSDAE 489 (604)
T ss_pred -------------cCCCCCC---Cc--c---------------------------------HHHHHhCCCCC-CCCChHH
Confidence 1111110 00 0 00000000000 0122344
Q ss_pred HHHHHHhCCCChhhh------cCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQ------EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~------~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++|..+||.+ .. ++--..||+||||||++||+|+++|++++|||.|++||
T Consensus 490 l~~vL~~vgL~~-L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 490 LVAVLHKVGLGD-LAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHHHHcCcHH-HHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 556666666642 11 11234799999999999999999999999999999998
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.84 E-value=4.8e-22 Score=168.79 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=39.8
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHcc----------CCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL----------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~----------~P~lLlLDEPT~~LD 262 (262)
...++. ...++++.+||+||+||++|||||+. +|++|||||||++||
T Consensus 109 ~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD 165 (213)
T cd03279 109 PQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLD 165 (213)
T ss_pred hhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCC
Confidence 334454 45678899999999999999999985 578999999999998
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=2e-20 Score=167.09 Aligned_cols=148 Identities=25% Similarity=0.290 Sum_probs=105.6
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++|+.+.|.. +||++|.+||++-|+|.||||||||+++++| ++.|++|+|+++|.++.....+..+..+
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG--L~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG--LYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc--ccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 5899999999975 7999999999999999999999999999998 8999999999999999766554443333
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
+.......++.+ +-........+.+..
T Consensus 400 SavFsDyhLF~~-----------------------------------------------------ll~~e~~as~q~i~~ 426 (546)
T COG4615 400 SAVFSDYHLFDQ-----------------------------------------------------LLGPEGKASPQLIEK 426 (546)
T ss_pred HHHhhhHhhhHh-----------------------------------------------------hhCCccCCChHHHHH
Confidence 322222211111 101111123344555
Q ss_pred HHHhCCCCh--hhhcC--CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 213 ILAGLGFTK--EMQEK--STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 213 ~l~~lgl~~--~~~~~--~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
+|+++.+.. ...+. ..-.||.|||+|+++--|++-+-+||++||=.+.-
T Consensus 427 ~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQ 479 (546)
T COG4615 427 WLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479 (546)
T ss_pred HHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccC
Confidence 555554431 12222 23469999999999999999999999999965543
No 382
>KOG0054|consensus
Probab=99.83 E-value=2.7e-20 Score=189.27 Aligned_cols=150 Identities=27% Similarity=0.351 Sum_probs=101.6
Q ss_pred ceeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 57 SVDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
...++++|.+++... ||||+|++|+.+|||||-|||||+||.+|.|+ ....+|+|.+.|. +..
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE--m~~~sG~v~v~gs-iaY------ 586 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE--MPKLSGSVAVNGS-VAY------ 586 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC--cccccceEEEcCe-EEE------
Confidence 345888999888643 89999999999999999999999999999994 4667788877665 211
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
..| ...+. ..+..+|+++..... .+++..+.+.|. +..
T Consensus 587 ------v~Q-------~pWI~----ngTvreNILFG~~~d-------------------~~rY~~Vi~aC~-L~~----- 624 (1381)
T KOG0054|consen 587 ------VPQ-------QPWIQ----NGTVRENILFGSPYD-------------------EERYDKVIKACA-LKK----- 624 (1381)
T ss_pred ------ecc-------ccHhh----CCcHHHhhhcCcccc-------------------HHHHHHHHHHcc-CHh-----
Confidence 111 11111 233446666653321 122222322221 000
Q ss_pred HHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
=++.| |=.+...+|.+ +||||||||++||||+-++++|+|||.|.|++|
T Consensus 625 ----Dle~Lp~GD~TeIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 625 ----DLEILPFGDLTEIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred ----HHhhcCCCCcceecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 02222 21235566755 599999999999999999999999999999998
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2.7e-20 Score=172.91 Aligned_cols=167 Identities=27% Similarity=0.335 Sum_probs=117.4
Q ss_pred eeEEEeeeeEee-CCCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchh-HHHHHHhhh
Q psy2689 58 VDIKVENFSLSP-CLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVNIVLSAD 135 (262)
Q Consensus 58 ~~i~i~~v~~~~-~~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~-~~~~~~~~~ 135 (262)
..+++++++..- -.|+||++.+||++||.|-=|||+|-|+++|.| ...+.+|+|.++|+++...+.. .+.
T Consensus 262 ~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG--~~~~~~G~i~l~G~~v~~~sp~~Ai~------ 333 (500)
T COG1129 262 PVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFG--ARPASSGEILLDGKPVRIRSPRDAIK------ 333 (500)
T ss_pred cEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhC--CCcCCCceEEECCEEccCCCHHHHHH------
Confidence 457788888764 349999999999999999999999999999998 6778899999999988755422 111
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCChhcHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEADAAEPRARR 212 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~ 212 (262)
..+.+.++.+.-..+........|+.+.. ...+. -+......+.+.+
T Consensus 334 -~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~-----------------------------l~~~~~~~~i~~~~e~~~~~~ 383 (500)
T COG1129 334 -AGIAYVPEDRKSEGLVLDMSIAENITLAS-----------------------------LRRFSRRGLIDRRKERALAER 383 (500)
T ss_pred -cCCEeCCcccccCcCcCCCcHHHheehHh-----------------------------hhhhccccccChHHHHHHHHH
Confidence 11222222211111100111122222210 11111 1233344567888
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+...+++.....+.++.+||||.||||.|||.|..+|++|||||||-|+|
T Consensus 384 ~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 384 YIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 99999997666778999999999999999999999999999999999998
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=6.4e-21 Score=161.79 Aligned_cols=51 Identities=27% Similarity=0.266 Sum_probs=42.6
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
.++++.+++.+ ..++++..||+|||||++||||++. +|++|||||||++||
T Consensus 109 ~~~~~~~~L~~-~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD 163 (212)
T cd03274 109 GEVEQIAQMPK-KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALD 163 (212)
T ss_pred CcEEEeecccc-ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCC
Confidence 34556677763 4567789999999999999999974 479999999999998
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=4.2e-21 Score=166.92 Aligned_cols=57 Identities=26% Similarity=0.379 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCCh-------------------hhhcCCCCCCCHHHHHHHHHHHHHc----cCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTK-------------------EMQEKSTKEFSGGWRMRVSLARALF----LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~-------------------~~~~~~~~~LSgGerqRv~LArAL~----~~P~lLlLDEPT~~LD 262 (262)
...++.++|+.+|+.. ...++++.+||+|||||++|||||+ .+|++|||||||++||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 3467778888888751 3456778999999999999999998 5789999999999998
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=7.1e-20 Score=158.86 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=34.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHccC----CCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLE----PTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~----P~lLlLDEPT~~LD 262 (262)
+++.+||+|||||++||||++.+ |+++||||||++||
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD 191 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALD 191 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCC
Confidence 44589999999999999999875 89999999999998
No 387
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.79 E-value=7e-20 Score=154.55 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=35.5
Q ss_pred cCCCCCCCHHHHHH------HHHHHHHccCCCEeEecCCCCCCC
Q psy2689 225 EKSTKEFSGGWRMR------VSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~~LSgGerqR------v~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+||+||+|| ++||||++.+|++|||||||++||
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD 153 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccC
Confidence 56788999999996 789999999999999999999998
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=1.2e-18 Score=146.32 Aligned_cols=52 Identities=27% Similarity=0.341 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHH----ccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL----FLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL----~~~P~lLlLDEPT~~LD 262 (262)
..++.++++. . ...++++.+||+|||||++||+|| +.+|++|||||||++||
T Consensus 90 ~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 90 QDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred HHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 3457777776 3 345778999999999999999999 68999999999999998
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.76 E-value=4.3e-18 Score=154.52 Aligned_cols=53 Identities=30% Similarity=0.572 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.+.++|. ...+|.+++|||||-||++||.|++++.+++++|||||.||
T Consensus 193 ~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLD 245 (591)
T COG1245 193 KFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245 (591)
T ss_pred cHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccccc
Confidence 577889999997 57889999999999999999999999999999999999998
No 390
>KOG0065|consensus
Probab=99.76 E-value=2.9e-19 Score=178.81 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=97.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
||+=-+.+|-.+||+|+|||||||||++|+|+.----.+|+|+++|.+.... ... ...++.+
T Consensus 809 ~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~---tF~-------R~~GYvq-------- 870 (1391)
T KOG0065|consen 809 NVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQE---TFA-------RVSGYVE-------- 870 (1391)
T ss_pred cCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchh---hhc-------cccceee--------
Confidence 7777899999999999999999999999999632234478999998875311 000 0111111
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCC-
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE- 230 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~- 230 (262)
+.+. .-.+.++.+...+......-..++..+..+-++++++.+++. +..+.-++.
T Consensus 871 -Q~Di----------------------H~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~ 926 (1391)
T KOG0065|consen 871 -QQDI----------------------HSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLP 926 (1391)
T ss_pred -cccc----------------------cCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCC
Confidence 0010 000111111111111111111233344456799999999997 345555555
Q ss_pred ---CCHHHHHHHHHHHHHccCC-CEeEecCCCCCCC
Q psy2689 231 ---FSGGWRMRVSLARALFLEP-TLLLLDEPTNHLD 262 (262)
Q Consensus 231 ---LSgGerqRv~LArAL~~~P-~lLlLDEPT~~LD 262 (262)
||..||+|+.||=-|+.+| .||+|||||||||
T Consensus 927 G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 927 GSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred CCCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 9999999999999999999 9999999999999
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=9e-18 Score=167.69 Aligned_cols=54 Identities=33% Similarity=0.445 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHcc---CCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL---EPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~---~P~lLlLDEPT~~LD 262 (262)
+..++|+.+||.....++++.+|||||+||+.||++|+. +|+++||||||++||
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD 863 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH 863 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence 456788899997434678899999999999999999997 599999999999998
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=7e-18 Score=175.78 Aligned_cols=56 Identities=34% Similarity=0.468 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHc---cCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF---LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~---~~P~lLlLDEPT~~LD 262 (262)
...++ ++|+.+|+.....++++.+|||||+|||+|||||+ .+|++|||||||++||
T Consensus 786 i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD 844 (1809)
T PRK00635 786 IHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLH 844 (1809)
T ss_pred HHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCC
Confidence 34455 58889999743368889999999999999999998 6999999999999998
No 393
>KOG0060|consensus
Probab=99.75 E-value=5.7e-18 Score=157.38 Aligned_cols=152 Identities=22% Similarity=0.290 Sum_probs=90.5
Q ss_pred eeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeE-----------EEeccc
Q psy2689 58 VDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-----------LYCEQE 119 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i-----------~~~~~~ 119 (262)
..|++++|++..+. +.||.|.+|+-+-|.||||||||+|+|+|+| +-+..+|++ +|..|.
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg--LWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG--LWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhc--ccccCCCeEEecccCCCCceEEecCC
Confidence 56889999987643 6899999999999999999999999999998 333244544 333332
Q ss_pred cccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh
Q psy2689 120 VEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK 199 (262)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (262)
...... ++ +.| +..+.....+..-+. .-+.+....+
T Consensus 510 PYmt~G-TL-------------RdQ------vIYP~~~~~~~~~~~---------------------~d~~i~r~Le--- 545 (659)
T KOG0060|consen 510 PYMTLG-TL-------------RDQ------VIYPLKAEDMDSKSA---------------------SDEDILRILE--- 545 (659)
T ss_pred CCcccc-ch-------------hhe------eeccCccccccccCC---------------------CHHHHHHHHH---
Confidence 211000 00 000 000000000000000 0001111110
Q ss_pred cCChhcHHHHHHHHHHhC-CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 200 SIEADAAEPRARRILAGL-GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 200 ~~~~~~~~~~~~~~l~~l-gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+...+++++ |+++.....-...||+||+||++.||.+.++|++-||||-||++|
T Consensus 546 -------~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~ 602 (659)
T KOG0060|consen 546 -------NVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT 602 (659)
T ss_pred -------HhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhcc
Confidence 11233444444 444222233467899999999999999999999999999999986
No 394
>KOG2355|consensus
Probab=99.75 E-value=1e-18 Score=144.20 Aligned_cols=156 Identities=25% Similarity=0.288 Sum_probs=100.3
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
..|++.++.++|.. |+|++++.|.+.-|||.||||||||||+|+|..+..+ |.|.+.|.+...+..-.
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~VlgrsaFhDt~l~---- 85 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGRSAFHDTSLE---- 85 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCcCcccccccc----
Confidence 45889999999975 8899999999999999999999999999999544333 77888887654321100
Q ss_pred HhhhHHHHHHHH-HhhHHH-----HhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 132 LSADKNRVKLLK-ECSKLE-----QVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 132 ~~~~~~~~~~~~-~~~~l~-----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
......++. +-.... ...+.+++++. .+.......
T Consensus 86 ---~Sgdl~YLGgeW~~~~~~agevplq~D~sae~------------------------------------mifgV~g~d 126 (291)
T KOG2355|consen 86 ---SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH------------------------------------MIFGVGGDD 126 (291)
T ss_pred ---ccCceeEecccccccccccccccccccccHHH------------------------------------HHhhccCCC
Confidence 000000000 000000 00001111111 112222222
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
- .+-+.++..+.++ ...| .+.+|-|||+||.||.-|++.=++|+|||-|-.||
T Consensus 127 p-~Rre~LI~iLDId--l~WR-mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLD 179 (291)
T KOG2355|consen 127 P-ERREKLIDILDID--LRWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLD 179 (291)
T ss_pred h-hHhhhhhhheecc--ceEE-EeeccccchhhhHHHHhcccceeEEEeeeeEeehH
Confidence 2 3445566666764 3344 78899999999999999999999999999998887
No 395
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=5.3e-18 Score=169.64 Aligned_cols=54 Identities=35% Similarity=0.460 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC---CEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P---~lLlLDEPT~~LD 262 (262)
+..++|+.+|+.....++++.+|||||+||+.|||+|+.+| +++||||||++||
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 45678999999743467889999999999999999999999 9999999999998
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=5.6e-18 Score=140.41 Aligned_cols=161 Identities=19% Similarity=0.281 Sum_probs=96.3
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCccc---CCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKL 148 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~---p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (262)
++|+++.+||+-||||.+|||||-..|.|+|. ... -+.-+..|++.++........+.++. .+.+.+
T Consensus 25 ~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v-~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig---------~~isMI 94 (330)
T COG4170 25 RVSMTLNEGEIRGLVGESGSGKSLIAKAICGV-NKDNWRVTADRMRFDDIDLLRLSPRERRKLVG---------HNVSMI 94 (330)
T ss_pred eeeeeeccceeeeeeccCCCchhHHHHHHhcc-cccceEEEhhhcccccchhhcCChHHhhhhhc---------cchhhh
Confidence 67888999999999999999999999999983 111 12223455555544443332222111 111111
Q ss_pred HHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCCh--hhhcC
Q psy2689 149 EQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTK--EMQEK 226 (262)
Q Consensus 149 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~--~~~~~ 226 (262)
++.+.+-.++.-.... .++++...+ . +-...+.++ .+...++.++|.++|+.+ +.+..
T Consensus 95 ---FQeP~sCLDPS~~iG~---QlIq~IP~w-T--------fkgrWWq~F-----~WrKrrAIeLLHrVGIKdHkDIM~S 154 (330)
T COG4170 95 ---FQEPQSCLDPSERVGR---QLIQNIPAW-T--------YKGRWWQRF-----GWRKRRAIELLHRVGIKDHKDIMRS 154 (330)
T ss_pred ---hcCchhhcChHHHHHH---HHHhhCccc-c--------ccchHhhhh-----chhHHHHHHHHHHhccccHHHHHHh
Confidence 1111111111000000 011111000 0 000111111 245678999999999974 34567
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 227 STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 227 ~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|-.||-|+|.||.|++.+|.+||.|||||+++
T Consensus 155 YP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e 190 (330)
T COG4170 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSME 190 (330)
T ss_pred CcchhccCcceeeeeehhhccCCceEeccCCCcccC
Confidence 899999999999999999999999999999999986
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.72 E-value=1.5e-17 Score=139.89 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=36.7
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.. ...+...+.||+||+|++.|++++ .+|+++|+||||++||
T Consensus 79 lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 79 IGDE-QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred cCch-hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 3443 234566789999999999999885 8999999999999998
No 398
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=146.48 Aligned_cols=173 Identities=23% Similarity=0.327 Sum_probs=117.7
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc-ccCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV-EASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i-~~~~~~~~~~ 130 (262)
..+++++++..-.. +|||+|..||++||.|-.|-|-+.|+.+|+| +..|.+|+|.++|.++ ...+....+
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisG--lr~~~~G~I~l~G~~v~~~~~~~~~r- 332 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG--LRKPASGRILLNGKDVLGRLSPRERR- 332 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhC--CCccCCceEEECCEeccccCCHHHHH-
Confidence 45899999987642 8999999999999999999999999999998 5567779999999997 222222110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.....+.++.+.-..+...-..++|+++...... .+....-+........+
T Consensus 333 -----~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~------------------------~~~~~g~l~~~~i~~~a 383 (501)
T COG3845 333 -----RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK------------------------PFSRGGFLDRRAIRKFA 383 (501)
T ss_pred -----hcCCccCChhhccCccccCccHHHHhhhhhcccc------------------------ccccccccCHHHHHHHH
Confidence 0011122211100000001112344444321100 00000112334566778
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.|+........++..||||.+||+-+||-|..+|++||+.+||-|||
T Consensus 384 ~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLD 435 (501)
T COG3845 384 RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435 (501)
T ss_pred HHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCcccc
Confidence 9999999987555567789999999999999999999999999999999998
No 399
>KOG0064|consensus
Probab=99.68 E-value=6e-17 Score=149.18 Aligned_cols=61 Identities=33% Similarity=0.519 Sum_probs=45.5
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhC------CcccCCceeEEEeccc
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATR------ALAIPSSIDLLYCEQE 119 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~------~~~~p~~g~i~~~~~~ 119 (262)
.|.++||-.--+. ..+|+|.+|-.+-|+||||||||+|+++|.|. .+..|..-.++|-.|.
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQR 553 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQR 553 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCC
Confidence 3777887665432 78999999999999999999999999999983 1233444445555444
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=143.05 Aligned_cols=132 Identities=29% Similarity=0.378 Sum_probs=92.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCC------cccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRA------LAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKEC 145 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~------~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (262)
|+||++++|++++|+|+|||||||||+||+|.. .+.|++|.|-+-...+... +...
T Consensus 401 ~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~--------iPge---------- 462 (593)
T COG2401 401 NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSAL--------IPGE---------- 462 (593)
T ss_pred ceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhc--------cCcc----------
Confidence 899999999999999999999999999999942 3678888876532211100 0000
Q ss_pred hHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhh-
Q psy2689 146 SKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQ- 224 (262)
Q Consensus 146 ~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~- 224 (262)
+ .+.+. -..+.+.+.+... +-..+.++|...|+.+...
T Consensus 463 --~----Ep~f~---------------------------------~~tilehl~s~tG--D~~~AveILnraGlsDAvly 501 (593)
T COG2401 463 --Y----EPEFG---------------------------------EVTILEHLRSKTG--DLNAAVEILNRAGLSDAVLY 501 (593)
T ss_pred --c----ccccC---------------------------------chhHHHHHhhccC--chhHHHHHHHhhccchhhhh
Confidence 0 00000 0001222222222 1234678899999976544
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++||.|||.|+.||+++...|.+++.||-.+|||
T Consensus 502 Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD 539 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539 (593)
T ss_pred hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcC
Confidence 46789999999999999999999999999999999998
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=1.8e-15 Score=128.43 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=33.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHHH----ccCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARAL----FLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL----~~~P~lLlLDEPT~~LD 262 (262)
.+..+.+||+|||||+.+|++| +.+|+++|+||||++||
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD 162 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMD 162 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCC
Confidence 4567889999999999877554 58999999999999998
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.59 E-value=4.9e-15 Score=120.51 Aligned_cols=33 Identities=39% Similarity=0.459 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 230 EFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 230 ~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
+||+||+||++||++|.. +|+++|+|||++++|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld 113 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLD 113 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCC
Confidence 399999999999999987 789999999999998
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=3.6e-15 Score=127.44 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=39.9
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHH--ccCCCEeEecCC---CCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL--FLEPTLLLLDEP---TNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL--~~~P~lLlLDEP---T~~LD 262 (262)
.+++..+++.+. ....+|.|+++++.+++++ +.+|+++||||| |++||
T Consensus 74 ~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 74 DCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 345666777533 2567999999999999999 899999999999 88887
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.55 E-value=9.9e-15 Score=122.85 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...+.+|.+++| +..+.+++.+|+++||||||+++|
T Consensus 87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld 122 (202)
T cd03243 87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTS 122 (202)
T ss_pred CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCC
Confidence 446778877776 666678889999999999999998
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.55 E-value=1.1e-14 Score=120.28 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHc----cCCCEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALF----LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~----~~P~lLlLDEPT~~LD 262 (262)
||+|||||++|||+|+ .+|+++|+||||++||
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD 130 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALD 130 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCC
Confidence 9999999999999996 6899999999999998
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=4.2e-14 Score=124.66 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 228 TKEFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 228 ~~~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
...|||||+||++||++++. +|+++||||||++||
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld 206 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGIS 206 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCC
Confidence 44599999999999997654 999999999999998
No 407
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=2.3e-14 Score=120.82 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++..++..+ ...+..+.||+|++|+ ..+.+++.+|+++|||||++|+|
T Consensus 75 I~~~~~~~d-~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 75 LLSRLSNDD-SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred eeEecCCcc-ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 344556543 3456688999999975 55566889999999999999886
No 408
>KOG0063|consensus
Probab=99.50 E-value=7.5e-14 Score=126.25 Aligned_cols=124 Identities=27% Similarity=0.391 Sum_probs=84.6
Q ss_pred CeeEEEeCC-----cEEEEECCCCCcHHHHHHHHHhCCcccCCce------eEEEeccccccCchhHHHHHHhhhHHHHH
Q psy2689 72 KVQKQIASG-----RRYGLVGPNGHGKTTLLRHIATRALAIPSSI------DLLYCEQEVEASDDSAVNIVLSADKNRVK 140 (262)
Q Consensus 72 ~isl~i~~G-----e~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g------~i~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (262)
+..|.|..| |++..+|.||.|||||+++++| ...|+.| .|.|..|.+..--...++ .
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag--~~~pd~~~e~p~lnVSykpqkispK~~~tvR----------~ 421 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAG--RLKPDEGGEIPVLNVSYKPQKISPKREGTVR----------Q 421 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhc--CCCCCccCcccccceeccccccCccccchHH----------H
Confidence 677777777 5689999999999999999998 4566665 455555544321100000 0
Q ss_pred HHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCC
Q psy2689 141 LLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT 220 (262)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~ 220 (262)
++. ..++ .......-+.++++.+.++
T Consensus 422 ll~----------------------------------------------------~kIr--~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 422 LLH----------------------------------------------------TKIR--DAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred HHH----------------------------------------------------HHhH--hhhcCHHHHHhhhhhhhHH
Confidence 000 0000 0111223345566667665
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 221 ~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.+..|||||.|||+||.+|-..+++.+.|||.+.||
T Consensus 448 -~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylD 488 (592)
T KOG0063|consen 448 -NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLD 488 (592)
T ss_pred -HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcC
Confidence 45677799999999999999999999999999999999998
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.7e-13 Score=120.37 Aligned_cols=35 Identities=34% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHc---------cCCCEeEecCCCCCCC
Q psy2689 228 TKEFSGGWRMRVSLARALF---------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 228 ~~~LSgGerqRv~LArAL~---------~~P~lLlLDEPT~~LD 262 (262)
...+|+||||+++|||+|+ .+|+++||||||++||
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD 224 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELD 224 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcC
Confidence 5668999999999999985 7999999999999998
No 410
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.39 E-value=1.6e-13 Score=115.41 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++..|++++|+||||||||||+|+|++
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 346789999999999999999999997
No 411
>KOG0065|consensus
Probab=99.39 E-value=9.7e-14 Score=139.71 Aligned_cols=154 Identities=25% Similarity=0.281 Sum_probs=94.0
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc-cCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA-IPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQ 150 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~-~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (262)
|++.-+++|+.+-++||.||||||||+.++|..-. ....|+|.|+|.+....... ....+..|..
T Consensus 133 ~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~----------~~~aY~~e~D---- 198 (1391)
T KOG0065|consen 133 DISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPK----------KTVAYNSEQD---- 198 (1391)
T ss_pred CcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccC----------ceEEeccccc----
Confidence 88999999999999999999999999999995211 23345899999886533210 0000000000
Q ss_pred hhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH-HHHHHHHHhCCCCh----hhhc
Q psy2689 151 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE-PRARRILAGLGFTK----EMQE 225 (262)
Q Consensus 151 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~lgl~~----~~~~ 225 (262)
+..+.+++ .+. .+.......+..++......+.. +..+.+++.+|++. ...|
T Consensus 199 vH~p~lTV--------------------reT---ldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn 255 (1391)
T KOG0065|consen 199 VHFPELTV--------------------RET---LDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN 255 (1391)
T ss_pred cccceeEE--------------------eeh---hhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc
Confidence 00011111 100 00000000000001111111111 24567888899862 3445
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.-+.-.|||||+||++|-+++.+|.++++||+|+|||
T Consensus 256 d~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 256 DMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred cccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 5567899999999999999999999999999999998
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.37 E-value=7.3e-12 Score=131.44 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=47.2
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccC---CCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE---PTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~---P~lLlLDEPT~~LD 262 (262)
.+.-+.|..+||.--.+.++..+|||||.||+-||.-|..+ +.++||||||+||+
T Consensus 1677 ~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh 1734 (1809)
T PRK00635 1677 QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLD 1734 (1809)
T ss_pred HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCC
Confidence 34556778888865557789999999999999999999876 79999999999996
No 413
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.34 E-value=6.1e-13 Score=110.51 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..++..+ ..++..++||+|++|...+.+. +.+|+++|+|||++++|
T Consensus 46 l~~~~~~d-~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d 92 (185)
T smart00534 46 FTRIGASD-SLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTS 92 (185)
T ss_pred EEEeCCCC-chhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCC
Confidence 44566653 3566788999998874333332 34999999999999998
No 414
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.9e-11 Score=118.20 Aligned_cols=53 Identities=36% Similarity=0.466 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC---CEeEecCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPTNHL 261 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P---~lLlLDEPT~~L 261 (262)
+..+.|-.+||.--.+.++..+|||||.|||-||.-|.... .++||||||.||
T Consensus 801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 34455666787645567899999999999999999999988 999999999998
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.27 E-value=4.9e-12 Score=125.31 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++||+|+++++.|++++ .+|+++|||||++|+|
T Consensus 381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD 416 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTD 416 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCC
Confidence 44788999999999999887 7899999999999998
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=2.7e-11 Score=102.94 Aligned_cols=29 Identities=31% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 234 GWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 234 GerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
-+-||++++++++.+|+++|||||++|+|
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 56699999999999999999999999997
No 417
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=9.3e-11 Score=99.33 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCCCCHH--HHHHHHHHHHHccCCCEeEecCCC-----CCCC
Q psy2689 228 TKEFSGG--WRMRVSLARALFLEPTLLLLDEPT-----NHLD 262 (262)
Q Consensus 228 ~~~LSgG--erqRv~LArAL~~~P~lLlLDEPT-----~~LD 262 (262)
++..||+ +++++.|||+++.+|+++++|||| ++||
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld 189 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQID 189 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccC
Confidence 4455555 999999999999999999999999 9998
No 418
>KOG0063|consensus
Probab=99.16 E-value=6.1e-11 Score=107.63 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++++.+.|. ...+|-+.+||||+-||.+||.+.++..++.++|||.+.||
T Consensus 193 ~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLD 245 (592)
T KOG0063|consen 193 NKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLD 245 (592)
T ss_pred cHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccch
Confidence 455667777775 46778899999999999999999999999999999999998
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.15 E-value=1.9e-10 Score=100.88 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=35.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
..++|+||||||||||+++|+| +..|.+|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~--~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR--ILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC--ccCCCCceEEECCEEee
Confidence 5689999999999999999998 67899999999999875
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.14 E-value=6.4e-10 Score=101.72 Aligned_cols=36 Identities=33% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHc---------cCCCEeEecCCCCCCC
Q psy2689 227 STKEFSGGWRMRVSLARALF---------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 227 ~~~~LSgGerqRv~LArAL~---------~~P~lLlLDEPT~~LD 262 (262)
....+|.||+++++||++|+ .+|+|||||||+++||
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD 314 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELD 314 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhC
Confidence 45689999999999999986 7999999999999998
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.14 E-value=1.3e-10 Score=98.89 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=25.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+..+ ++++|+||||+|||||+++|++
T Consensus 23 ~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 23 DTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 44555555 9999999999999999999986
No 422
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.14 E-value=1.4e-10 Score=107.50 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=39.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
|..|.+.+|++++|+|+||+|||||+++|++ ...++.|.|.+.|+.
T Consensus 148 D~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~--~~~~~~gvI~~iGer 193 (432)
T PRK06793 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMIAK--NAKADINVISLVGER 193 (432)
T ss_pred eccceecCCcEEEEECCCCCChHHHHHHHhc--cCCCCeEEEEeCCCC
Confidence 5568999999999999999999999999998 457778877766654
No 423
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.10 E-value=7.3e-11 Score=118.75 Aligned_cols=50 Identities=30% Similarity=0.387 Sum_probs=45.1
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
+|+.+|+.....++++.+|||||+|||+||+||+.+| .+|||||||++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd 523 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 523 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCC
Confidence 6888898632368999999999999999999999997 9999999999998
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.10 E-value=3.6e-10 Score=96.09 Aligned_cols=49 Identities=33% Similarity=0.449 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHH----ccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL----FLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL----~~~P~lLlLDEPT~~LD 262 (262)
...+.+++..+++... .||||||.+++||-.| ...++++|||||.++||
T Consensus 120 ~~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD 172 (220)
T PF02463_consen 120 LKDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALD 172 (220)
T ss_dssp HHHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-
T ss_pred cccccccccccccccc-------ccccccccccccccccccccccccccccccccccccc
Confidence 3556677777777532 7999999999999655 34679999999999998
No 425
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=9.9e-11 Score=117.60 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=43.9
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
+|..+|+.....++++.+|||||+|||.||+||+.+| .+|||||||+|||
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD 521 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 521 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCC
Confidence 4677788632268899999999999999999999986 8999999999998
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.06 E-value=2.4e-10 Score=86.19 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=37.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
+++|++.+|++++|+||||||||||++++. +|++.+++.++..
T Consensus 7 ~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~ 49 (107)
T cd00820 7 GVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVE 49 (107)
T ss_pred eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHH
Confidence 466789999999999999999999999986 6789999888743
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.04 E-value=2.9e-09 Score=92.41 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCCHHH--------HHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 230 EFSGGW--------RMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 230 ~LSgGe--------rqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|||+ +||+++||++..+++|.+| ||+.+|
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d 167 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVD 167 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheec
Confidence 479999 9999999999999999999 999887
No 428
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.02 E-value=4e-10 Score=104.67 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-eEEEeccccccCchhHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-DLLYCEQEVEASDDSAV 128 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-~i~~~~~~i~~~~~~~~ 128 (262)
+|||++.+||+++|+|||||||||||+ +| +..|++| +|.++|.++.......+
T Consensus 24 ~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~--l~~~~sGg~I~ldg~~~~~~~~~ai 77 (504)
T TIGR03238 24 KFNKELPSSSLLFLCGSSGDGKSEILA--EN--KRKFSEGYEFFLDATHSFSPNKNAM 77 (504)
T ss_pred CCceeecCCCEEEEECCCCCCHHHHHh--cC--CCCCCCCCEEEECCEECCCCCHHHH
Confidence 677789999999999999999999999 44 4567776 79999999876554433
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.01 E-value=2.3e-10 Score=113.73 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=34.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+..++||+|+++++.|++++ .+|.++|||||++|+|
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtD 421 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTD 421 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCC
Confidence 3456789999999999999999 8999999999999998
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.93 E-value=6.7e-09 Score=89.25 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=32.7
Q ss_pred eEEEeeeeEeeCCCeeEEEeCCcEEEEECCCCCcHHHH-HHHHHh
Q psy2689 59 DIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL-LRHIAT 102 (262)
Q Consensus 59 ~i~i~~v~~~~~~~isl~i~~Ge~~~LvGpNGsGKSTL-lk~i~g 102 (262)
.+.++++++.+++. +++|+++.|+|+|||||||| ++++++
T Consensus 7 ~~~~~~ld~~l~gg----i~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 7 ELSRDELHKRLGGG----IPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred EEEEeeeehhhCCC----CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45667777766542 78999999999999999999 688886
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.88 E-value=1.9e-09 Score=92.05 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=28.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|++.+|++++|+||||+||||++++|++
T Consensus 23 ~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 23 DIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred eEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5677889999999999999999999999997
No 432
>PRK13695 putative NTPase; Provisional
Probab=98.82 E-value=1.4e-09 Score=89.27 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=31.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEeEecC--CCCCC
Q psy2689 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDE--PTNHL 261 (262)
Q Consensus 225 ~~~~~~LSgGerqRv~LArAL~~~P~lLlLDE--PT~~L 261 (262)
.+....+||+++-++.+++..+.+|++||+|| |+.++
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~ 111 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELK 111 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhh
Confidence 34466799999999999999999999999999 54443
No 433
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.73 E-value=7.5e-09 Score=86.62 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
+.|..+.... ..+.+..++|.|++++..+ .+..|+++|+|.|+...
T Consensus 66 ~~l~~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~ 111 (198)
T cd02023 66 SHLQDLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALY 111 (198)
T ss_pred HHHHHHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhcc
Confidence 3444444432 3456778899998876655 57889999999998765
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.69 E-value=2e-08 Score=85.55 Aligned_cols=31 Identities=42% Similarity=0.503 Sum_probs=28.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|++|++.+|++++|.||||+||||++++++.
T Consensus 22 di~l~~~~~~~~~itG~n~~gKs~~l~~i~~ 52 (218)
T cd03286 22 DVDLGATSPRILVLTGPNMGGKSTLLRTVCL 52 (218)
T ss_pred eeEEeecCCcEEEEECCCCCchHHHHHHHHH
Confidence 6777889999999999999999999999986
No 435
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.60 E-value=3.7e-08 Score=94.98 Aligned_cols=37 Identities=38% Similarity=0.477 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHc----------cCCCEeEecCCC-CCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALF----------LEPTLLLLDEPT-NHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~----------~~P~lLlLDEPT-~~LD 262 (262)
.++.+||||||||++||+||+ .+|++||||||| ++||
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 356899999999999999987 599999999998 7798
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.57 E-value=1.3e-07 Score=77.88 Aligned_cols=39 Identities=8% Similarity=-0.017 Sum_probs=31.2
Q ss_pred hcCCCCCCCHHHHH------HHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRM------RVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerq------Rv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..+..+|+|++| ....+.+...+|+++++||||+.+|
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 45667789999998 5555556678999999999998765
No 437
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.55 E-value=3.7e-08 Score=81.82 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 117 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~ 117 (262)
.+..|+.++|+||||||||||+++|++ +..|..|.|.+.+
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~--~i~~~~~~i~ied 60 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLA--FIPPDERIITIED 60 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHh--hcCCCCCEEEECC
Confidence 468999999999999999999999998 4567778777754
No 438
>PRK01156 chromosome segregation protein; Provisional
Probab=98.51 E-value=1.5e-07 Score=95.66 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCChh---------------hhcCCCCCCCHHHHHHHHH------HHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKE---------------MQEKSTKEFSGGWRMRVSL------ARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~---------------~~~~~~~~LSgGerqRv~L------ArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..++..+|++.. ....++..|||||++|++| ||+|+.+|++|+|||||+|||
T Consensus 765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD 839 (895)
T PRK01156 765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839 (895)
T ss_pred HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCC
Confidence 45567777776411 1224688999999999975 599999999999999999998
No 439
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.51 E-value=2.3e-07 Score=87.38 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=33.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce--eEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI--DLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g--~i~~~~~~ 119 (262)
+.++.+..|.+++||||||+||||++..|++ ......| +|.+...|
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~--~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAA--RCVMRHGASKVALLTTD 295 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHH--HHHHhcCCCeEEEEeCC
Confidence 3455577899999999999999999999997 3334433 46554433
No 440
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.50 E-value=1.7e-06 Score=66.29 Aligned_cols=34 Identities=44% Similarity=0.538 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 228 TKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 228 ~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
.....++...+..+++|--..|.++++||+....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLL 91 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3457888888888888888889999999998654
No 441
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.48 E-value=5.4e-07 Score=75.60 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
.+.|+||+||||||+++.|.+. +..+..+.|...+.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~-~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY-INKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hhhcCCcEEEEEcCC
Confidence 6889999999999999998873 333445666654443
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=1.1e-07 Score=100.04 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=33.8
Q ss_pred CCCCCCHHHHH------HHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 227 STKEFSGGWRM------RVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 227 ~~~~LSgGerq------Rv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..+.||||||| |++|||||+.+|++|||||||++||
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD 1237 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLD 1237 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 34689999999 9999999999999999999999998
No 443
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=3.1e-07 Score=85.54 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=47.5
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 117 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~ 117 (262)
.+..++++..|.. |.-+.|.+|++++|+||||||||||+++|++ +..|+.|.|.+.|
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~--l~~pd~gvv~liG 200 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLAR--ADAFDTVVIALVG 200 (450)
T ss_pred CeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhC--CCCCCeeeeeecc
Confidence 3677888888853 4445899999999999999999999999997 5678888887764
No 444
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.46 E-value=1.3e-07 Score=91.38 Aligned_cols=34 Identities=38% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEeEecCCCCCCC
Q psy2689 229 KEFSGGWRMRVSLARALFLE----PTLLLLDEPTNHLD 262 (262)
Q Consensus 229 ~~LSgGerqRv~LArAL~~~----P~lLlLDEPT~~LD 262 (262)
..|||||+||++||++++.. |++|||||||+|||
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld 476 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVS 476 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCC
Confidence 47899999999999999986 69999999999998
No 445
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.44 E-value=1.5e-07 Score=96.96 Aligned_cols=38 Identities=45% Similarity=0.489 Sum_probs=36.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcc--------CCCEeEecCCCCCCC
Q psy2689 225 EKSTKEFSGGWRMRVSLARALFL--------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~~LSgGerqRv~LArAL~~--------~P~lLlLDEPT~~LD 262 (262)
.+++.+|||||+++++||+||+. +|++||+||||++||
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD 989 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLD 989 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCC
Confidence 47899999999999999999996 899999999999998
No 446
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=1.5e-07 Score=96.96 Aligned_cols=40 Identities=33% Similarity=0.338 Sum_probs=36.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHcc----------CCCEeEecCCCCCCC
Q psy2689 223 MQEKSTKEFSGGWRMRVSLARALFL----------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 223 ~~~~~~~~LSgGerqRv~LArAL~~----------~P~lLlLDEPT~~LD 262 (262)
..++++.+|||||++||+||+||+. +|++|||||||++||
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD 992 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLD 992 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCC
Confidence 3467899999999999999999986 799999999999998
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.44 E-value=3.6e-07 Score=72.72 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
++.|.||+|+|||||++.+++. ..+..+.|.|.+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECC
Confidence 4789999999999999999973 34456777776554
No 448
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.43 E-value=3.7e-07 Score=61.87 Aligned_cols=30 Identities=40% Similarity=0.558 Sum_probs=25.0
Q ss_pred eeEEEeC-CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 73 VQKQIAS-GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 73 isl~i~~-Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.+.+ |.++.|.||||||||||+.+|.-
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455664 57999999999999999999974
No 449
>PRK10869 recombination and repair protein; Provisional
Probab=98.41 E-value=2.1e-07 Score=89.59 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 230 EFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 230 ~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
.|||||+|||+||++++. +|++||||||++|||
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld 466 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGIS 466 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCC
Confidence 479999999999999997 589999999999998
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.35 E-value=1.8e-06 Score=74.21 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHcc--CCCEeEecCCCCC
Q psy2689 229 KEFSGGWRMRVSLARALFL--EPTLLLLDEPTNH 260 (262)
Q Consensus 229 ~~LSgGerqRv~LArAL~~--~P~lLlLDEPT~~ 260 (262)
...|.++.+.+.+++.++. +|+++++||||+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~ 132 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIF 132 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence 3456788999999999987 8999999999954
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=98.34 E-value=3.4e-07 Score=92.85 Aligned_cols=38 Identities=45% Similarity=0.587 Sum_probs=33.4
Q ss_pred cCCCCCCCHHHHH------HHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 225 EKSTKEFSGGWRM------RVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~~LSgGerq------Rv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++..|||||++ |++||++++.+|+++||||||++||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD 826 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLD 826 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccC
Confidence 4678899999999 5566678889999999999999998
No 452
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=6.8e-07 Score=73.69 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+|++++|+|+||||||||+++|++. ..+ +.+++.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~--l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAAL--FSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh--cCC----EEECCccc
Confidence 5999999999999999999999983 333 46666654
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.30 E-value=1.2e-06 Score=72.54 Aligned_cols=37 Identities=32% Similarity=0.568 Sum_probs=28.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
|++++|+||||||||||+++|++. ..+ .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~--~~~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR--EQT---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc--CCC---eEEEcCEECC
Confidence 789999999999999999999973 222 3555554443
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=1.2e-06 Score=81.88 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=40.0
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
++ |.+.+|++++|+|+||+|||||+++|++ +..|+.|.|.+.|+.
T Consensus 151 ~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~--~~~~~~gvI~~~Ger 195 (438)
T PRK07721 151 SL-LTVGKGQRVGIFAGSGVGKSTLMGMIAR--NTSADLNVIALIGER 195 (438)
T ss_pred ee-eeecCCcEEEEECCCCCCHHHHHHHHhc--ccCCCeEEEEEEecC
Confidence 45 8899999999999999999999999998 567888998887654
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.27 E-value=1.3e-06 Score=73.35 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.+|++++|+||+|||||||+++|++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999999984
No 456
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.27 E-value=6.6e-07 Score=75.47 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++|+++||+||||||||||++.|++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999999998
No 457
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=2.9e-06 Score=82.78 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.+.|+||||+|||||+++|.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999987
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.26 E-value=5.6e-07 Score=93.34 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=35.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHc----cCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALF----LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~----~~P~lLlLDEPT~~LD 262 (262)
.+.++..|||||++|++||++++ .+|+++||||||++||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld 1125 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD 1125 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCcccccc
Confidence 45678899999999999999984 6779999999999998
No 459
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.25 E-value=1.1e-06 Score=81.45 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=40.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
|.+|++.+|++++|+|+||+|||||+++|++ ...|+.|.|.+.|+.
T Consensus 132 D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~--~~~~~~gvi~~iGer 177 (418)
T TIGR03498 132 DTFLPLCRGQRLGIFAGSGVGKSTLLSMLAR--NTDADVVVIALVGER 177 (418)
T ss_pred eeeccccCCcEEEEECCCCCChHHHHHHHhC--CCCCCEEEEEEEeee
Confidence 6788999999999999999999999999997 567888888877764
No 460
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.22 E-value=2e-06 Score=77.32 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=36.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
|.+.+|++++|+|+||+|||||+++|++ ...|+.|.+...|+
T Consensus 64 ~~i~~Gqri~I~G~sG~GKTtLl~~Ia~--~~~~~~~vi~~iGe 105 (326)
T cd01136 64 LTVGKGQRLGIFAGSGVGKSTLLGMIAR--GTTADVNVIALIGE 105 (326)
T ss_pred eEEcCCcEEEEECCCCCChHHHHHHHhC--CCCCCEEEEEEEec
Confidence 7899999999999999999999999998 45677777766654
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=1.6e-06 Score=80.74 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=31.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~ 110 (262)
++ |++.+|++++|+|+||||||||+++|+| +..++.
T Consensus 148 ~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g--~~~~dv 183 (434)
T PRK07196 148 GL-LTIGKGQRVGLMAGSGVGKSVLLGMITR--YTQADV 183 (434)
T ss_pred ce-EeEecceEEEEECCCCCCccHHHHHHhc--ccCCCe
Confidence 56 8999999999999999999999999998 445554
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.21 E-value=1.6e-06 Score=74.75 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHH
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIA 101 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~ 101 (262)
|.+..|+||.|+|||||+-.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6778999999999999988886
No 463
>PRK08149 ATP synthase SpaL; Validated
Probab=98.21 E-value=1.9e-06 Score=80.10 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc---eeEEEeccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS---IDLLYCEQEVE 121 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~---g~i~~~~~~i~ 121 (262)
++ |++.+|++++|+|+||+|||||+++|++ ...++. |.|...+.++.
T Consensus 144 ~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~--~~~~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 144 GL-LTCGVGQRMGIFASAGCGKTSLMNMLIE--HSEADVFVIGLIGERGREVT 193 (428)
T ss_pred ee-eeEecCCEEEEECCCCCChhHHHHHHhc--CCCCCeEEEEEEeeCCccHH
Confidence 44 7899999999999999999999999997 445554 66666666653
No 464
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.20 E-value=1.1e-06 Score=77.85 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=33.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 123 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~ 123 (262)
.++||.||||||||||+++|.+..-..|.+|.|.+.+.|-...
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 5899999999999999999998322237778887777665433
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=2.6e-06 Score=78.25 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=39.0
Q ss_pred eEEEeeeeEeeCC-----------------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 59 DIKVENFSLSPCL-----------------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----------------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.+.|+|+++.|.. |+.+.|.+|++++|+||.|||||||++.|+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHh
Confidence 4778888888742 57788999999999999999999999999973
No 466
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.17 E-value=3.2e-06 Score=78.86 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 117 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~ 117 (262)
|..|.+.+|++++|+|+||||||||+++|++. ......+.|.+.|
T Consensus 156 D~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~-~~~~~~~vi~liG 200 (442)
T PRK06315 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARN-AEEADVNVIALIG 200 (442)
T ss_pred eccccccCCcEEEEECCCCCCcchHHHHhhcc-cccCCceEEEEEC
Confidence 44478999999999999999999999999983 2223345566555
No 467
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.16 E-value=6.9e-06 Score=74.73 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=32.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
..++..+.|.||+||||||+++.|.+. +..+..+.|...+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~-i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDY-INKNAAGHIITIEDP 160 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHh-hCcCCCCEEEEEcCC
Confidence 356889999999999999999999873 344455666665443
No 468
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.14 E-value=4.8e-06 Score=68.61 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+--++.|+|.||+||||||-.|+-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 356899999999999999999975
No 469
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.14 E-value=3.8e-06 Score=78.38 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=39.1
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
++ |.+.+|++++|+|+||+|||||+++|++ ...++.|.|.+.|+.
T Consensus 156 ~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~--~~~~d~~vi~~iGer 200 (441)
T PRK09099 156 GL-MTLGEGQRMGIFAPAGVGKSTLMGMFAR--GTQCDVNVIALIGER 200 (441)
T ss_pred ce-eeecCCCEEEEECCCCCCHHHHHHHHhC--CCCCCeEEEEEEccC
Confidence 55 7899999999999999999999999998 466778888877753
No 470
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.13 E-value=3.8e-06 Score=79.77 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=48.4
Q ss_pred EeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 62 VENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 62 i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+.|++..++. ++++.+..|+.++|+||||||||||+++|.| +..|.+|++.+....+
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~g--llpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRING--LLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhc--cCCCCCCcEEEecchh
Confidence 3477777775 7899999999999999999999999999998 5678888877766554
No 471
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.13 E-value=2.9e-06 Score=78.92 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=44.1
Q ss_pred EEEeeeeEeeC-C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 60 IKVENFSLSPC-L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 60 i~i~~v~~~~~-~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
++.++++..+. + |.-|++.+|++++|+|+||+|||||+++|++ ...++.+.+.+.|+.
T Consensus 130 ~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~--~~~~d~~vi~~iGeR 192 (433)
T PRK07594 130 MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN--APDADSNVLVLIGER 192 (433)
T ss_pred eeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHHhcC--CCCCCEEEEEEECCC
Confidence 44455555552 2 3338999999999999999999999999998 567777777666653
No 472
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=2.1e-06 Score=79.98 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=39.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc---eeEEEecccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS---IDLLYCEQEV 120 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~---g~i~~~~~~i 120 (262)
|.-|++.+|++++|+|+||+|||||+++|++ +..|+. |.|...+.++
T Consensus 167 D~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~--~~~~d~iv~g~Igerg~ev 216 (455)
T PRK07960 167 NALLTVGRGQRMGLFAGSGVGKSVLLGMMAR--YTQADVIVVGLIGERGREV 216 (455)
T ss_pred eecccccCCcEEEEECCCCCCccHHHHHHhC--CCCCCEEEEEEEEECCeEH
Confidence 5568999999999999999999999999998 455654 6777777765
No 473
>PRK05922 type III secretion system ATPase; Validated
Probab=98.12 E-value=4.2e-06 Score=77.83 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=37.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
|.-|.+.+|++++|+|+||+|||||+++|++ ...++.|.+...|+
T Consensus 149 D~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~--~~~~d~gvi~liGe 193 (434)
T PRK05922 149 DAFLTLGKGQRIGVFSEPGSGKSSLLSTIAK--GSKSTINVIALIGE 193 (434)
T ss_pred cceEEEcCCcEEEEECCCCCChHHHHHHHhc--cCCCCceEEEEeCC
Confidence 5568999999999999999999999999998 34667776655554
No 474
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.11 E-value=2.2e-06 Score=73.52 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeE
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 113 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i 113 (262)
.+..++||+||||||||||+++|++ ...+..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~--~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA--LLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HhhhccCCc
Confidence 3567999999999999999999998 456666763
No 475
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.09 E-value=2.7e-06 Score=70.29 Aligned_cols=30 Identities=33% Similarity=0.587 Sum_probs=23.8
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++++++.+| +.+|+||||+||||++.+|.-
T Consensus 12 ~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 12 DLEIDFSPG-LNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp EEEEE--SE-EEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 345566666 999999999999999999864
No 476
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.09 E-value=3.9e-06 Score=78.23 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=38.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
++ |.+.+|++++|+|+||+|||||+++|++ ...|+.|.+.+.|++
T Consensus 138 ~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~--~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 138 GL-LTCGEGQRIGIFAGAGVGKSTLLGMIAR--GASADVNVIALIGER 182 (422)
T ss_pred hh-ccccCCCEEEEECCCCCChHHHHHHHhC--CCCCCEEEEEEEccC
Confidence 45 8899999999999999999999999998 567888877775543
No 477
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.08 E-value=1.9e-06 Score=89.57 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=35.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
..+++..||||||++++||++|+. +|+++|||||+++||
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld 1110 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLD 1110 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccC
Confidence 345678999999999999999985 789999999999998
No 478
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=1.5e-05 Score=72.92 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=27.3
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 73 isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.+.+|.+++|+||||+||||++..|++
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455688999999999999999999999997
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.06 E-value=2.7e-06 Score=76.30 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=32.9
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEE
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 115 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~ 115 (262)
++.+..|+.++|+||+|||||||+++|++ +..+..+.+.+
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~--~~~~~~~iv~i 177 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVD--EIPKDERIITI 177 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHc--cCCccccEEEE
Confidence 35677899999999999999999999997 44566665555
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.06 E-value=3.5e-06 Score=75.76 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=35.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.+|++++|+||||+||||++..|++ ...+..++|.+.+.|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~--~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAH--KYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCeEEEEecCc
Confidence 5789999999999999999999998 4556778999988776
No 481
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.05 E-value=6.7e-06 Score=83.04 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~ 101 (262)
|++|. ..+.++.|.|||.+||||+||.++
T Consensus 600 d~~l~-~~~~~~iiTGpN~~GKSt~lr~v~ 628 (854)
T PRK05399 600 DCDLD-EERRLLLITGPNMAGKSTYMRQVA 628 (854)
T ss_pred ceeeC-CCCcEEEEECCCCCCcHHHHHHHH
Confidence 56666 667899999999999999999987
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.05 E-value=2.9e-06 Score=72.40 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCccc-CCceeEEEeccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALAI-PSSIDLLYCEQE 119 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~~-p~~g~i~~~~~~ 119 (262)
++||.||||||||||+++|.+. +.. +..+.|.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~-l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL-LSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH-HhhcCCCCcEEEEecC
Confidence 4899999999999999999983 221 345666654333
No 483
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=3.4e-06 Score=77.32 Aligned_cols=34 Identities=35% Similarity=0.318 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCCEeEecCCCCCCC
Q psy2689 229 KEFSGGWRMRVSLARALFL---------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 229 ~~LSgGerqRv~LArAL~~---------~P~lLlLDEPT~~LD 262 (262)
..+|.||++++.||.+|+. +|+|||||||+++||
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD 316 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELD 316 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccC
Confidence 5799999999999999999 999999999999998
No 484
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.03 E-value=8.3e-06 Score=75.74 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=38.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
|.+.+|++++|+|+||+|||||+++|++ ...++.|.|.+.|+..
T Consensus 132 ~~i~~Gqri~I~G~sG~GKTtLl~~i~~--~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 132 LTIGKGQRVGIFAGSGVGKSTLLGMIAR--NAKADINVIALIGERG 175 (413)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCeEEEEEEccch
Confidence 7899999999999999999999999997 5677888887777643
No 485
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.02 E-value=6.3e-06 Score=77.14 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=36.8
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
-|.+.+|++++|+|+||+|||||+++|++ ...++.+.+...|+.
T Consensus 157 l~~i~~Gq~~~I~G~sG~GKStLl~~I~~--~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 157 LLTVGKGQRIGIFAGSGVGKSTLLGMIAR--NTEADVNVIALIGER 200 (440)
T ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhC--CCCCCEEEEEEEeec
Confidence 37899999999999999999999999998 456777766665543
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.02 E-value=4.2e-06 Score=68.65 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
|++++|+||||||||||++.|++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 789999999999999999999973
No 487
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.02 E-value=9.4e-06 Score=75.34 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=37.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
|.-|.+.+|++++|+|+||+|||||+++|++ ...|+.+.+...|+.
T Consensus 129 d~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~--~~~~~~~vi~~iGer 174 (411)
T TIGR03496 129 NGLLTVGRGQRMGIFAGSGVGKSTLLGMMAR--YTEADVVVVGLIGER 174 (411)
T ss_pred cceEEEecCcEEEEECCCCCCHHHHHHHHhc--CCCCCEEEEEEEecC
Confidence 4458999999999999999999999999997 456666655555543
No 488
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.01 E-value=2e-05 Score=65.11 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999999984
No 489
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=6.7e-06 Score=86.78 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=30.8
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHH----hCCcccCC-ceeEEEeccc
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIA----TRALAIPS-SIDLLYCEQE 119 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~----g~~~~~p~-~g~i~~~~~~ 119 (262)
.+.|.+ .+++|+|||||||||++.+|. | ..+|. .|.+++.+..
T Consensus 23 ~I~F~~-~~~~I~G~NGaGKTTil~ai~~al~G--~~~~~~~g~~~i~~~~ 70 (1311)
T TIGR00606 23 IIDFFS-PLTILVGPNGAGKTTIIECLKYICTG--DFPPGTKGNTFVHDPK 70 (1311)
T ss_pred eeeccc-ceEEEECCCCCCHHHHHHHHHHHhcC--CCCCCCCCceEecCCC
Confidence 334444 499999999999999999994 5 33443 5776665543
No 490
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.01 E-value=8.9e-06 Score=75.66 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=29.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|..|.+.+|++++|+|+||+|||||+++|++
T Consensus 154 D~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 154 NAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 5568999999999999999999999999997
No 491
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=5.1e-06 Score=77.15 Aligned_cols=26 Identities=46% Similarity=0.776 Sum_probs=24.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..|++++||||||+||||+++.|++
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999999997
No 492
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.98 E-value=7.2e-06 Score=68.70 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=34.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.+|.+++|+|+||||||||.+.|.+. +.....|.+.+++.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~-l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA-LHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-HHhCCCCEEEEcCEeH
Confidence 67999999999999999999999983 3334456788877665
No 493
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.97 E-value=1e-05 Score=65.48 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=32.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCCc--ccCCce----eEEEeccccc
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRAL--AIPSSI----DLLYCEQEVE 121 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~~--~~p~~g----~i~~~~~~i~ 121 (262)
.-.++|+||+|||||||++.|.+... ..|+.| .+.+.+.++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~ 61 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLN 61 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEE
Confidence 34599999999999999999998532 456777 6666665553
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.96 E-value=6.3e-06 Score=67.65 Aligned_cols=23 Identities=48% Similarity=0.689 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|++++|+||||||||||+++|++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999997
No 495
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.95 E-value=1.2e-05 Score=83.00 Aligned_cols=44 Identities=32% Similarity=0.505 Sum_probs=36.6
Q ss_pred eEEEeeeeEeeCC-CeeEE---EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-KVQKQ---IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 59 ~i~i~~v~~~~~~-~isl~---i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.|.++||.-..+. .|+|+ +..+.+++|+|||||||||+|.+|+.
T Consensus 5 ~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~ 52 (1047)
T PRK10246 5 SLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred EEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4777888765554 78888 45689999999999999999999985
No 496
>PRK14079 recF recombination protein F; Provisional
Probab=97.94 E-value=6.9e-06 Score=74.90 Aligned_cols=34 Identities=38% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEeEecCCCCCCC
Q psy2689 229 KEFSGGWRMRVSLARALF---------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 229 ~~LSgGerqRv~LArAL~---------~~P~lLlLDEPT~~LD 262 (262)
..+|+||+++++||+.|+ .+|++||||||+++||
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD 304 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELD 304 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcC
Confidence 478999999999999999 8999999999999998
No 497
>PRK01889 GTPase RsgA; Reviewed
Probab=97.92 E-value=1e-05 Score=74.00 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=35.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
.+.+|++++|+|+||+|||||+++|+| ...+..|.|.+++.
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g--~~~~~~G~i~~~~~ 231 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLG--EEVQKTGAVREDDS 231 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHH--hcccceeeEEECCC
Confidence 467899999999999999999999998 56688899988654
No 498
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.92 E-value=1.4e-05 Score=74.44 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=36.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
++ +++.+|++++|+|+||+|||||+++|++ ...++.+.|...|+.
T Consensus 150 ~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~--~~~~~v~vi~~iGer 194 (434)
T PRK08472 150 GL-LTCGKGQKLGIFAGSGVGKSTLMGMIVK--GCLAPIKVVALIGER 194 (434)
T ss_pred hc-ceecCCCEEEEECCCCCCHHHHHHHHhh--ccCCCEEEEEeeCcc
Confidence 45 8899999999999999999999999997 344566666666654
No 499
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.92 E-value=1.5e-05 Score=78.45 Aligned_cols=44 Identities=32% Similarity=0.321 Sum_probs=36.7
Q ss_pred eEEEeeeeEeeCC-CeeEEEeCCc-EEEEECCCCCcHHHHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-KVQKQIASGR-RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 59 ~i~i~~v~~~~~~-~isl~i~~Ge-~~~LvGpNGsGKSTLlk~i~g 102 (262)
.|.++|+...++. .++|...+|+ +++|+||||+|||||+++|.-
T Consensus 5 ~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~ 50 (650)
T TIGR03185 5 QLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQL 50 (650)
T ss_pred EEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3778888776665 7888888776 899999999999999999843
No 500
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.91 E-value=1.1e-05 Score=67.90 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=29.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.++.++||.|+||||||||.+.|++. + ..+.+.+.+++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~-l---~~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE-L---GDESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-h---CCCceEEEeCCc
Confidence 46789999999999999999999983 3 234555555543
Done!