Query psy2689
Match_columns 262
No_of_seqs 240 out of 2370
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:41:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.8E-38 6.2E-43 272.2 14.1 163 60-262 2-177 (235)
2 2pcj_A ABC transporter, lipopr 100.0 4.9E-38 1.7E-42 267.7 12.3 163 59-262 4-172 (224)
3 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-37 6E-42 271.7 15.5 163 59-262 7-175 (275)
4 2olj_A Amino acid ABC transpor 100.0 6.8E-38 2.3E-42 272.8 12.3 163 59-262 24-191 (263)
5 3tui_C Methionine import ATP-b 100.0 4.6E-38 1.6E-42 284.3 11.3 164 58-262 23-195 (366)
6 1b0u_A Histidine permease; ABC 100.0 1.5E-37 5.1E-42 270.6 12.5 164 59-262 6-185 (262)
7 4g1u_C Hemin import ATP-bindin 100.0 8.2E-38 2.8E-42 272.8 10.9 157 58-262 10-179 (266)
8 3rlf_A Maltose/maltodextrin im 100.0 1.2E-37 4.2E-42 283.1 11.0 158 59-262 3-165 (381)
9 3fvq_A Fe(3+) IONS import ATP- 100.0 5.3E-38 1.8E-42 283.6 8.6 162 59-262 4-170 (359)
10 1vpl_A ABC transporter, ATP-bi 100.0 2E-37 6.7E-42 268.9 11.1 159 59-262 15-178 (256)
11 1g6h_A High-affinity branched- 100.0 1.6E-37 5.4E-42 269.7 10.0 167 59-262 7-185 (257)
12 2ihy_A ABC transporter, ATP-bi 100.0 8.8E-37 3E-41 267.9 13.8 166 58-262 20-193 (279)
13 1z47_A CYSA, putative ABC-tran 100.0 4.1E-37 1.4E-41 277.8 11.9 161 56-262 11-177 (355)
14 1ji0_A ABC transporter; ATP bi 100.0 4.8E-37 1.6E-41 264.1 10.1 160 59-262 6-171 (240)
15 2d2e_A SUFC protein; ABC-ATPas 100.0 1.7E-36 5.8E-41 262.2 12.9 163 59-262 3-175 (250)
16 2it1_A 362AA long hypothetical 100.0 2.6E-36 8.8E-41 273.3 14.4 158 59-262 3-165 (362)
17 1v43_A Sugar-binding transport 100.0 1.9E-36 6.5E-41 275.1 13.1 157 59-262 11-173 (372)
18 2zu0_C Probable ATP-dependent 100.0 2.9E-36 9.9E-41 263.2 13.1 165 59-262 20-196 (267)
19 1g29_1 MALK, maltose transport 100.0 4.5E-36 1.5E-40 272.9 14.5 158 59-262 3-171 (372)
20 2yyz_A Sugar ABC transporter, 100.0 7.6E-37 2.6E-41 276.5 8.7 158 59-262 3-165 (359)
21 1sgw_A Putative ABC transporte 100.0 2E-36 6.7E-41 256.0 9.0 152 59-262 10-165 (214)
22 3d31_A Sulfate/molybdate ABC t 100.0 1E-35 3.4E-40 268.3 13.7 154 60-262 2-159 (348)
23 2onk_A Molybdate/tungstate ABC 100.0 2.3E-36 7.7E-41 259.9 9.0 154 60-262 2-158 (240)
24 2ff7_A Alpha-hemolysin translo 100.0 8.9E-36 3E-40 257.3 12.4 152 59-262 7-177 (247)
25 1oxx_K GLCV, glucose, ABC tran 100.0 1.8E-36 6.3E-41 273.8 7.1 163 59-262 3-172 (353)
26 2yz2_A Putative ABC transporte 100.0 1.7E-35 5.7E-40 258.2 11.9 158 59-262 2-170 (266)
27 3nh6_A ATP-binding cassette SU 100.0 1.3E-35 4.6E-40 263.2 8.8 160 59-262 53-222 (306)
28 2ixe_A Antigen peptide transpo 100.0 2.2E-35 7.4E-40 258.1 9.4 161 59-262 16-188 (271)
29 1mv5_A LMRA, multidrug resista 100.0 1.1E-35 3.7E-40 256.1 6.7 154 60-262 2-171 (243)
30 2nq2_C Hypothetical ABC transp 100.0 6.6E-34 2.3E-38 246.4 16.2 150 59-262 4-160 (253)
31 2qi9_C Vitamin B12 import ATP- 100.0 7.9E-35 2.7E-39 251.5 10.1 153 59-262 4-165 (249)
32 2pjz_A Hypothetical protein ST 100.0 1.4E-34 4.7E-39 251.9 10.5 149 60-262 2-160 (263)
33 2ghi_A Transport protein; mult 100.0 3.8E-34 1.3E-38 248.8 10.5 153 59-262 17-187 (260)
34 3gd7_A Fusion complex of cysti 100.0 9.4E-35 3.2E-39 265.5 6.7 151 59-262 19-187 (390)
35 2pze_A Cystic fibrosis transme 100.0 2.4E-32 8.1E-37 233.3 15.5 149 59-262 6-162 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.2E-32 4.1E-37 236.3 13.0 142 59-262 3-159 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 1.9E-32 6.6E-37 262.8 12.3 154 59-262 341-512 (582)
38 4a82_A Cystic fibrosis transme 100.0 2.5E-32 8.4E-37 261.8 10.0 152 58-262 338-509 (578)
39 3b60_A Lipid A export ATP-bind 100.0 3.1E-32 1.1E-36 261.3 10.5 153 59-262 341-512 (582)
40 3qf4_B Uncharacterized ABC tra 100.0 2E-32 6.7E-37 263.5 9.0 155 58-262 353-523 (598)
41 2yl4_A ATP-binding cassette SU 100.0 3.5E-32 1.2E-36 261.6 10.2 154 60-262 342-515 (595)
42 3qf4_A ABC transporter, ATP-bi 100.0 5.4E-32 1.8E-36 259.9 10.1 162 59-262 341-511 (587)
43 2bbs_A Cystic fibrosis transme 100.0 8.1E-31 2.8E-35 231.1 12.2 148 59-262 40-191 (290)
44 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-30 4.2E-35 247.6 11.1 146 58-262 268-417 (538)
45 4f4c_A Multidrug resistance pr 100.0 8.9E-31 3E-35 270.7 7.2 164 59-262 1076-1249(1321)
46 4f4c_A Multidrug resistance pr 100.0 6.1E-30 2.1E-34 264.5 11.1 162 59-262 415-586 (1321)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 3.6E-29 1.2E-33 237.8 14.5 144 57-262 285-433 (538)
48 3bk7_A ABC transporter ATP-bin 100.0 2.7E-29 9.3E-34 241.3 13.6 143 58-262 356-503 (607)
49 3g5u_A MCG1178, multidrug resi 100.0 1.9E-29 6.6E-34 260.1 11.4 162 59-262 387-558 (1284)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 7.3E-29 2.5E-33 235.7 9.9 54 208-262 137-190 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 4.5E-29 1.5E-33 239.8 8.4 160 63-262 95-260 (607)
52 3g5u_A MCG1178, multidrug resi 100.0 3E-29 1E-33 258.7 7.6 165 58-262 1029-1203(1284)
53 2iw3_A Elongation factor 3A; a 99.9 4.4E-28 1.5E-32 241.4 13.2 57 206-262 876-933 (986)
54 2iw3_A Elongation factor 3A; a 99.9 2.7E-27 9.2E-32 235.8 17.1 139 58-262 434-580 (986)
55 3j16_B RLI1P; ribosome recycli 99.9 7.4E-28 2.5E-32 231.2 12.5 133 63-262 350-499 (608)
56 3j16_B RLI1P; ribosome recycli 99.9 2.9E-28 1E-32 234.0 9.1 55 207-262 199-253 (608)
57 3ux8_A Excinuclease ABC, A sub 99.9 3E-27 1E-31 230.1 10.0 51 212-262 184-236 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.2E-27 4.3E-32 227.0 6.5 53 209-262 118-170 (538)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.9E-25 9.8E-30 216.2 15.8 55 208-262 521-578 (670)
60 2vf7_A UVRA2, excinuclease ABC 99.9 7.9E-24 2.7E-28 208.9 9.8 56 207-262 707-765 (842)
61 4gp7_A Metallophosphoesterase; 99.9 2.2E-24 7.5E-29 175.6 3.4 44 217-262 72-115 (171)
62 4aby_A DNA repair protein RECN 99.9 2.7E-23 9.3E-28 190.9 7.1 32 231-262 296-329 (415)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 4E-27 1.4E-31 219.5 -18.8 147 59-262 118-274 (460)
64 2r6f_A Excinuclease ABC subuni 99.9 2.4E-22 8.1E-27 199.3 12.5 55 208-262 823-880 (972)
65 3pih_A Uvrabc system protein A 99.9 8E-22 2.8E-26 196.1 16.1 56 207-262 782-840 (916)
66 2ygr_A Uvrabc system protein A 99.9 3.4E-22 1.2E-26 198.7 12.4 55 208-262 841-898 (993)
67 3b85_A Phosphate starvation-in 99.8 2.6E-23 8.9E-28 174.8 -5.4 35 77-114 19-53 (208)
68 1e69_A Chromosome segregation 99.8 1.2E-21 4.2E-26 174.8 4.8 39 224-262 213-255 (322)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 6.4E-20 2.2E-24 166.4 11.6 38 225-262 274-317 (365)
70 3aez_A Pantothenate kinase; tr 99.8 4.5E-23 1.5E-27 183.4 -9.4 120 77-262 87-208 (312)
71 1tq4_A IIGP1, interferon-induc 99.8 5.4E-22 1.8E-26 182.3 -6.3 126 72-262 41-198 (413)
72 1ye8_A Protein THEP1, hypothet 99.8 1.1E-20 3.7E-25 155.0 0.4 40 223-262 69-115 (178)
73 2v9p_A Replication protein E1; 99.8 1.9E-21 6.4E-26 172.0 -9.4 52 60-116 102-157 (305)
74 3b9q_A Chloroplast SRP recepto 99.8 8.2E-20 2.8E-24 161.6 0.9 141 72-262 92-234 (302)
75 1z6g_A Guanylate kinase; struc 99.8 1.6E-21 5.3E-26 164.8 -10.1 44 72-121 15-58 (218)
76 3qkt_A DNA double-strand break 99.7 6.8E-18 2.3E-22 151.5 11.0 39 224-262 242-286 (339)
77 2og2_A Putative signal recogni 99.7 3.8E-19 1.3E-23 160.7 2.1 141 72-262 149-291 (359)
78 3sop_A Neuronal-specific septi 99.7 5.7E-20 1.9E-24 160.3 -6.2 38 82-121 4-41 (270)
79 2o5v_A DNA replication and rep 99.7 2E-16 6.7E-21 143.0 14.8 38 225-262 259-306 (359)
80 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.5E-18 8.4E-23 154.0 0.6 46 72-119 163-208 (330)
81 1pui_A ENGB, probable GTP-bind 99.6 1.2E-17 3.9E-22 138.7 -1.5 54 209-262 128-182 (210)
82 1w1w_A Structural maintenance 99.6 1.1E-15 3.9E-20 141.1 10.7 37 226-262 329-369 (430)
83 1tf7_A KAIC; homohexamer, hexa 99.6 3.6E-16 1.2E-20 148.1 7.1 44 217-262 341-384 (525)
84 3thx_B DNA mismatch repair pro 99.6 1.3E-16 4.4E-21 159.0 3.4 47 214-262 720-766 (918)
85 1cr0_A DNA primase/helicase; R 99.6 2.3E-15 7.8E-20 132.1 8.0 46 73-120 28-74 (296)
86 1nlf_A Regulatory protein REPA 99.6 6.5E-15 2.2E-19 128.3 8.6 49 210-262 99-149 (279)
87 2jeo_A Uridine-cytidine kinase 99.6 3.6E-16 1.2E-20 133.8 0.2 36 225-261 111-146 (245)
88 2eyu_A Twitching motility prot 99.6 2.1E-15 7.1E-20 130.7 4.9 43 77-121 22-65 (261)
89 3asz_A Uridine kinase; cytidin 99.5 1.6E-17 5.6E-22 138.5 -8.1 51 209-260 69-123 (211)
90 3thx_A DNA mismatch repair pro 99.5 5.7E-15 2E-19 147.5 8.4 31 72-102 654-684 (934)
91 2o8b_B DNA mismatch repair pro 99.5 1.3E-15 4.5E-20 153.7 2.2 44 58-102 749-810 (1022)
92 1znw_A Guanylate kinase, GMP k 99.5 2.6E-17 9E-22 137.4 -8.7 28 76-103 16-43 (207)
93 2obl_A ESCN; ATPase, hydrolase 99.5 3.3E-15 1.1E-19 134.5 2.4 58 59-119 45-108 (347)
94 2i3b_A HCR-ntpase, human cance 99.5 9.5E-17 3.2E-21 132.7 -7.2 37 80-120 1-37 (189)
95 4a74_A DNA repair and recombin 99.5 1.3E-14 4.5E-19 121.7 5.7 43 77-119 22-69 (231)
96 2ehv_A Hypothetical protein PH 99.5 3.2E-14 1.1E-18 120.8 6.1 43 77-119 27-69 (251)
97 2dpy_A FLII, flagellum-specifi 99.5 2.9E-15 9.8E-20 138.8 -2.2 57 59-118 131-193 (438)
98 1ewq_A DNA mismatch repair pro 99.4 8.1E-15 2.8E-19 143.9 0.4 34 229-262 634-672 (765)
99 1rj9_A FTSY, signal recognitio 99.4 4.1E-14 1.4E-18 125.1 4.4 42 79-122 101-142 (304)
100 2qnr_A Septin-2, protein NEDD5 99.4 3.7E-16 1.3E-20 138.1 -9.4 34 225-262 108-142 (301)
101 1lw7_A Transcriptional regulat 99.4 3E-14 1E-18 128.9 2.5 43 72-116 160-208 (365)
102 1pzn_A RAD51, DNA repair and r 99.4 1.4E-13 4.9E-18 123.9 6.4 47 74-120 125-176 (349)
103 2w0m_A SSO2452; RECA, SSPF, un 99.4 6E-13 2E-17 111.4 9.2 42 77-120 20-61 (235)
104 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 9.1E-14 3.1E-18 110.3 3.9 39 224-262 51-95 (148)
105 1htw_A HI0065; nucleotide-bind 99.4 6.7E-15 2.3E-19 118.2 -2.9 59 60-121 8-71 (158)
106 2f1r_A Molybdopterin-guanine d 99.4 6.1E-16 2.1E-20 125.9 -9.3 39 81-121 3-44 (171)
107 2bbw_A Adenylate kinase 4, AK4 99.4 5.5E-15 1.9E-19 126.4 -4.4 38 79-118 26-66 (246)
108 2cvh_A DNA repair and recombin 99.4 8.6E-13 2.9E-17 109.8 7.1 26 77-102 17-42 (220)
109 1tf7_A KAIC; homohexamer, hexa 99.3 2.3E-14 8E-19 135.6 -3.7 46 72-119 30-78 (525)
110 1wb9_A DNA mismatch repair pro 99.3 1.6E-12 5.5E-17 128.3 7.7 30 72-102 600-629 (800)
111 1vma_A Cell division protein F 99.3 1.1E-12 3.6E-17 116.1 5.6 46 73-120 97-142 (306)
112 2qag_C Septin-7; cell cycle, c 99.3 2.2E-14 7.6E-19 131.9 -5.6 40 59-104 11-55 (418)
113 1zp6_A Hypothetical protein AT 99.3 1.4E-13 4.6E-18 112.6 -1.0 41 76-120 5-45 (191)
114 3pih_A Uvrabc system protein A 99.3 1.8E-12 6.3E-17 129.1 5.9 54 209-262 443-498 (916)
115 3c8u_A Fructokinase; YP_612366 99.3 6.4E-14 2.2E-18 116.8 -4.7 41 78-120 20-63 (208)
116 3jvv_A Twitching mobility prot 99.3 1.5E-12 5.2E-17 117.4 3.5 43 76-120 119-162 (356)
117 2rcn_A Probable GTPase ENGC; Y 99.2 8.9E-13 3.1E-17 118.8 1.1 37 78-116 213-250 (358)
118 1odf_A YGR205W, hypothetical 3 99.2 3.5E-13 1.2E-17 118.3 -2.2 36 227-262 131-166 (290)
119 2vf7_A UVRA2, excinuclease ABC 99.2 7.1E-12 2.4E-16 123.9 5.9 56 206-262 356-413 (842)
120 2r6f_A Excinuclease ABC subuni 99.2 6.7E-12 2.3E-16 124.8 5.3 51 212-262 486-538 (972)
121 3kta_B Chromosome segregation 99.2 6.7E-12 2.3E-16 102.0 4.3 39 224-262 58-100 (173)
122 2ewv_A Twitching motility prot 99.2 1.2E-11 4.2E-16 112.1 5.9 42 77-120 133-175 (372)
123 2gza_A Type IV secretion syste 99.2 2.4E-12 8.4E-17 116.3 0.7 46 71-118 166-211 (361)
124 2ygr_A Uvrabc system protein A 99.2 8.9E-12 3E-16 124.3 4.7 51 212-262 503-555 (993)
125 1p9r_A General secretion pathw 99.2 1.4E-12 4.9E-17 119.9 -1.5 58 60-121 144-206 (418)
126 1udx_A The GTP-binding protein 99.2 2.1E-13 7.3E-18 125.3 -7.2 32 72-103 149-180 (416)
127 1ls1_A Signal recognition part 99.2 5.9E-11 2E-15 104.4 8.5 57 60-120 77-136 (295)
128 3szr_A Interferon-induced GTP- 99.1 1.1E-13 3.8E-18 133.1 -10.5 42 74-120 42-84 (608)
129 3euj_A Chromosome partition pr 99.1 2.1E-11 7.2E-16 113.7 4.9 47 72-121 22-68 (483)
130 1n0w_A DNA repair protein RAD5 99.1 1.2E-10 4.1E-15 98.2 8.9 43 77-119 21-68 (243)
131 1nij_A Hypothetical protein YJ 99.1 2.2E-13 7.5E-18 121.1 -10.6 42 81-122 5-52 (318)
132 2x8a_A Nuclear valosin-contain 99.1 2.9E-13 1E-17 117.9 -10.9 44 73-122 39-82 (274)
133 4ad8_A DNA repair protein RECN 99.0 1.5E-10 5.2E-15 109.2 4.0 37 226-262 392-431 (517)
134 2yv5_A YJEQ protein; hydrolase 99.0 6.7E-12 2.3E-16 110.8 -5.5 43 76-121 161-206 (302)
135 1qhl_A Protein (cell division 99.0 1.2E-11 4.1E-16 104.8 -3.9 58 59-121 9-66 (227)
136 1sq5_A Pantothenate kinase; P- 99.0 1.7E-11 5.8E-16 108.3 -3.6 58 60-119 38-122 (308)
137 3ec2_A DNA replication protein 99.0 3.6E-10 1.2E-14 91.5 4.5 27 76-102 34-60 (180)
138 2yhs_A FTSY, cell division pro 99.0 1.6E-10 5.4E-15 107.8 2.7 48 72-121 285-332 (503)
139 2qm8_A GTPase/ATPase; G protei 99.0 1.8E-11 6.1E-16 109.7 -3.6 59 61-121 31-94 (337)
140 3lnc_A Guanylate kinase, GMP k 99.0 3.1E-10 1E-14 95.7 3.8 33 71-103 18-51 (231)
141 3e70_C DPA, signal recognition 98.9 2.3E-09 7.9E-14 95.5 9.2 43 78-122 127-169 (328)
142 3lda_A DNA repair protein RAD5 98.9 1.7E-09 5.8E-14 98.9 6.9 43 77-119 175-222 (400)
143 2kjq_A DNAA-related protein; s 98.9 1.2E-09 4.1E-14 86.4 4.9 24 79-102 35-58 (149)
144 3auy_A DNA double-strand break 98.9 1.4E-09 4.8E-14 98.4 5.8 37 226-262 276-319 (371)
145 2px0_A Flagellar biosynthesis 98.9 4.2E-09 1.4E-13 92.6 8.3 41 78-120 103-144 (296)
146 3tr0_A Guanylate kinase, GMP k 98.8 1.5E-09 5E-14 89.3 3.8 30 74-103 1-30 (205)
147 1s96_A Guanylate kinase, GMP k 98.8 1.7E-09 5.7E-14 91.0 3.3 43 76-120 12-56 (219)
148 1lvg_A Guanylate kinase, GMP k 98.8 3E-09 1E-13 87.8 4.1 25 78-102 2-26 (198)
149 3kta_A Chromosome segregation 98.7 7.6E-09 2.6E-13 83.6 4.7 41 60-102 7-48 (182)
150 2qag_B Septin-6, protein NEDD5 98.7 9.8E-10 3.4E-14 100.9 -0.7 42 61-103 18-65 (427)
151 3a00_A Guanylate kinase, GMP k 98.7 7.9E-09 2.7E-13 84.2 4.3 23 80-102 1-23 (186)
152 1u0l_A Probable GTPase ENGC; p 98.7 3E-09 1E-13 93.6 1.8 45 75-121 164-211 (301)
153 1sxj_E Activator 1 40 kDa subu 98.7 1.5E-08 5.2E-13 90.2 5.2 37 83-120 39-75 (354)
154 2bdt_A BH3686; alpha-beta prot 98.6 1.8E-08 6E-13 82.0 3.4 36 80-120 2-37 (189)
155 2oap_1 GSPE-2, type II secreti 98.6 7.1E-09 2.4E-13 97.6 1.2 46 72-119 252-297 (511)
156 3nwj_A ATSK2; P loop, shikimat 98.6 4.4E-09 1.5E-13 90.2 -0.7 44 59-102 17-70 (250)
157 3uie_A Adenylyl-sulfate kinase 98.6 4.4E-09 1.5E-13 86.6 -0.9 45 74-121 19-65 (200)
158 2j41_A Guanylate kinase; GMP, 98.6 3.7E-08 1.3E-12 80.8 4.3 35 75-111 1-35 (207)
159 4eun_A Thermoresistant glucoki 98.6 3.9E-08 1.3E-12 80.9 4.4 39 77-121 26-64 (200)
160 1t9h_A YLOQ, probable GTPase E 98.5 7E-09 2.4E-13 91.5 -1.5 44 75-120 168-214 (307)
161 4e22_A Cytidylate kinase; P-lo 98.4 2.2E-08 7.6E-13 85.7 0.1 35 78-114 25-62 (252)
162 1kgd_A CASK, peripheral plasma 98.4 1.1E-07 3.7E-12 77.0 3.8 24 79-102 4-27 (180)
163 2vp4_A Deoxynucleoside kinase; 98.4 9E-08 3.1E-12 80.6 3.1 39 77-121 17-55 (230)
164 2ius_A DNA translocase FTSK; n 98.4 4.5E-09 1.5E-13 98.7 -5.9 48 72-119 159-206 (512)
165 1rz3_A Hypothetical protein rb 98.4 1.2E-07 4.1E-12 78.1 3.2 43 78-122 20-62 (201)
166 2dr3_A UPF0273 protein PH0284; 98.4 9.8E-07 3.3E-11 74.0 8.6 41 77-119 20-60 (247)
167 3vaa_A Shikimate kinase, SK; s 98.4 1.9E-07 6.4E-12 76.7 3.8 31 72-102 17-47 (199)
168 2qtf_A Protein HFLX, GTP-bindi 98.4 6.1E-07 2.1E-11 81.0 7.4 44 78-121 176-229 (364)
169 2r6a_A DNAB helicase, replicat 98.4 9E-07 3.1E-11 82.0 8.5 43 76-120 199-242 (454)
170 3ney_A 55 kDa erythrocyte memb 98.4 3.6E-07 1.2E-11 75.4 5.1 28 76-103 15-42 (197)
171 4a1f_A DNAB helicase, replicat 98.3 8.8E-07 3E-11 79.1 7.2 32 230-261 109-140 (338)
172 3k1j_A LON protease, ATP-depen 98.3 1.1E-08 3.8E-13 98.2 -5.8 49 72-121 52-100 (604)
173 1knq_A Gluconate kinase; ALFA/ 98.3 4.4E-07 1.5E-11 72.6 4.1 37 78-120 6-42 (175)
174 1zu4_A FTSY; GTPase, signal re 98.3 2E-07 6.9E-12 82.7 2.3 48 72-121 97-144 (320)
175 2zr9_A Protein RECA, recombina 98.3 1.2E-06 4.2E-11 78.5 7.1 40 77-118 58-97 (349)
176 1oix_A RAS-related protein RAB 98.3 5.3E-07 1.8E-11 73.3 4.1 39 82-120 31-78 (191)
177 3tau_A Guanylate kinase, GMP k 98.3 5E-07 1.7E-11 74.8 3.8 26 78-103 6-31 (208)
178 3tqc_A Pantothenate kinase; bi 98.2 1.1E-06 3.6E-11 78.0 5.4 42 82-123 94-135 (321)
179 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 8.8E-07 3E-11 80.6 4.5 41 77-117 17-67 (392)
180 2f9l_A RAB11B, member RAS onco 98.2 8.6E-07 2.9E-11 72.3 4.0 39 82-120 7-54 (199)
181 1in4_A RUVB, holliday junction 98.2 1.7E-08 5.8E-13 89.9 -7.1 31 72-102 36-73 (334)
182 3cr8_A Sulfate adenylyltranfer 98.2 4.3E-07 1.5E-11 86.2 1.6 43 76-120 365-409 (552)
183 1ixz_A ATP-dependent metallopr 98.2 1.1E-06 3.6E-11 74.7 3.8 53 62-120 28-85 (254)
184 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 3E-06 1E-10 66.6 6.1 30 72-102 16-45 (149)
185 2xau_A PRE-mRNA-splicing facto 98.1 6.4E-07 2.2E-11 88.3 2.5 37 226-262 186-223 (773)
186 3kl4_A SRP54, signal recogniti 98.1 7.6E-06 2.6E-10 75.3 9.4 40 79-120 96-135 (433)
187 1iy2_A ATP-dependent metallopr 98.1 1.3E-06 4.4E-11 75.4 3.9 53 62-120 52-109 (278)
188 1kag_A SKI, shikimate kinase I 98.1 1.1E-06 3.7E-11 70.0 3.1 24 79-102 3-26 (173)
189 1svm_A Large T antigen; AAA+ f 98.1 5.5E-07 1.9E-11 81.6 1.2 36 224-259 276-312 (377)
190 3bh0_A DNAB-like replicative h 98.0 3.4E-06 1.2E-10 74.4 4.5 26 77-102 65-90 (315)
191 2www_A Methylmalonic aciduria 98.0 2.5E-06 8.7E-11 76.4 3.5 41 79-121 73-113 (349)
192 2qt1_A Nicotinamide riboside k 98.0 2.6E-06 9E-11 70.0 2.7 28 76-103 17-44 (207)
193 2p67_A LAO/AO transport system 97.9 1.4E-06 4.7E-11 77.8 0.6 44 75-120 51-94 (341)
194 2e87_A Hypothetical protein PH 97.9 1.3E-05 4.3E-10 71.9 6.6 25 79-103 166-190 (357)
195 3qks_A DNA double-strand break 97.9 1.4E-05 4.7E-10 66.0 6.1 29 72-101 16-44 (203)
196 2ce7_A Cell division protein F 97.9 8.8E-06 3E-10 75.8 5.4 26 233-258 93-118 (476)
197 1cke_A CK, MSSA, protein (cyti 97.9 7.4E-06 2.5E-10 68.0 3.7 37 79-115 4-41 (227)
198 1jjv_A Dephospho-COA kinase; P 97.8 8.6E-06 2.9E-10 66.8 3.5 22 82-103 4-25 (206)
199 2pez_A Bifunctional 3'-phospho 97.8 1.1E-05 3.7E-10 64.7 3.7 40 78-120 3-44 (179)
200 2ffh_A Protein (FFH); SRP54, s 97.8 9.6E-06 3.3E-10 74.5 3.5 55 63-121 80-137 (425)
201 1y63_A LMAJ004144AAA protein; 97.8 1E-05 3.6E-10 65.3 3.3 31 72-102 2-32 (184)
202 2if2_A Dephospho-COA kinase; a 97.8 1.2E-05 4E-10 65.8 3.1 21 82-102 3-23 (204)
203 4eaq_A DTMP kinase, thymidylat 97.7 1.9E-05 6.6E-10 66.4 4.2 37 77-116 23-59 (229)
204 3ice_A Transcription terminati 97.7 6.2E-06 2.1E-10 74.6 1.0 31 72-102 166-196 (422)
205 1v5w_A DMC1, meiotic recombina 97.7 7.2E-05 2.4E-09 66.7 7.9 26 77-102 119-144 (343)
206 1j8m_F SRP54, signal recogniti 97.7 7.2E-06 2.5E-10 71.9 1.1 56 63-121 78-137 (297)
207 2qor_A Guanylate kinase; phosp 97.7 1.6E-05 5.4E-10 65.3 3.0 26 77-102 9-34 (204)
208 1m7g_A Adenylylsulfate kinase; 97.7 8.7E-06 3E-10 67.2 1.5 42 77-120 22-65 (211)
209 2gj8_A MNME, tRNA modification 97.7 1.9E-05 6.4E-10 62.9 3.2 26 78-103 2-27 (172)
210 1mky_A Probable GTP-binding pr 97.7 3.6E-05 1.2E-09 70.8 5.2 42 81-122 181-232 (439)
211 3hr8_A Protein RECA; alpha and 97.6 2.4E-05 8.1E-10 70.3 3.4 40 77-118 58-97 (356)
212 2yvu_A Probable adenylyl-sulfa 97.6 2.6E-05 8.9E-10 62.8 3.1 37 77-115 10-46 (186)
213 2z43_A DNA repair and recombin 97.6 0.00016 5.5E-09 63.8 8.3 26 77-102 104-129 (324)
214 3b9p_A CG5977-PA, isoform A; A 97.6 6.8E-05 2.3E-09 64.8 5.6 29 232-260 97-125 (297)
215 1ega_A Protein (GTP-binding pr 97.6 2.4E-05 8.1E-10 68.5 2.4 26 79-104 7-32 (301)
216 1fnn_A CDC6P, cell division co 97.6 0.00048 1.6E-08 61.2 11.1 24 79-102 41-66 (389)
217 2wji_A Ferrous iron transport 97.6 3.9E-05 1.4E-09 60.3 3.4 22 82-103 5-26 (165)
218 4ad8_A DNA repair protein RECN 97.6 1.6E-05 5.5E-10 74.7 1.2 40 60-102 43-82 (517)
219 3m6a_A ATP-dependent protease 97.5 3.6E-05 1.2E-09 72.9 3.1 43 72-117 101-143 (543)
220 3cm0_A Adenylate kinase; ATP-b 97.5 4.6E-05 1.6E-09 61.1 3.3 25 78-102 2-26 (186)
221 2dhr_A FTSH; AAA+ protein, hex 97.5 4.5E-05 1.5E-09 71.5 3.5 43 72-120 58-100 (499)
222 2ohf_A Protein OLA1, GTP-bindi 97.5 4.6E-05 1.6E-09 69.3 3.5 41 77-117 19-68 (396)
223 3t34_A Dynamin-related protein 97.5 4E-05 1.4E-09 68.6 2.9 32 82-113 36-67 (360)
224 3t61_A Gluconokinase; PSI-biol 97.5 4.3E-05 1.5E-09 62.4 2.8 23 80-102 18-40 (202)
225 3auy_A DNA double-strand break 97.5 0.00012 4E-09 65.9 5.9 29 72-101 18-46 (371)
226 1q3t_A Cytidylate kinase; nucl 97.5 6.4E-05 2.2E-09 63.1 3.7 25 78-102 14-38 (236)
227 2dy1_A Elongation factor G; tr 97.5 4.8E-05 1.6E-09 73.8 3.0 29 74-102 3-31 (665)
228 2wjg_A FEOB, ferrous iron tran 97.4 7.3E-05 2.5E-09 59.6 3.5 22 82-103 9-30 (188)
229 2zej_A Dardarin, leucine-rich 97.4 7.6E-05 2.6E-09 59.7 3.1 22 82-103 4-25 (184)
230 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.5E-09 58.0 3.3 21 82-102 3-23 (173)
231 1np6_A Molybdopterin-guanine d 97.3 0.00012 4.1E-09 59.0 3.5 22 81-102 7-28 (174)
232 2qag_A Septin-2, protein NEDD5 97.3 4.5E-05 1.5E-09 68.5 0.6 38 60-103 18-60 (361)
233 1qhx_A CPT, protein (chloramph 97.3 0.00016 5.6E-09 57.3 3.6 23 80-102 3-25 (178)
234 1kht_A Adenylate kinase; phosp 97.2 0.00018 6.1E-09 57.6 3.6 23 80-102 3-25 (192)
235 3lw7_A Adenylate kinase relate 97.2 0.00016 5.6E-09 56.6 3.3 20 82-101 3-22 (179)
236 1vht_A Dephospho-COA kinase; s 97.2 0.00019 6.4E-09 59.2 3.7 24 79-102 3-26 (218)
237 2q6t_A DNAB replication FORK h 97.2 0.00074 2.5E-08 62.1 7.9 42 77-119 197-238 (444)
238 3lxx_A GTPase IMAP family memb 97.2 0.00019 6.4E-09 60.1 3.5 23 82-104 31-53 (239)
239 3r20_A Cytidylate kinase; stru 97.2 0.00019 6.3E-09 60.6 3.5 23 80-102 9-31 (233)
240 2ga8_A Hypothetical 39.9 kDa p 97.2 6.2E-05 2.1E-09 67.4 0.5 27 76-102 18-46 (359)
241 2jaq_A Deoxyguanosine kinase; 97.2 0.00021 7.2E-09 57.8 3.4 21 82-102 2-22 (205)
242 1m2o_B GTP-binding protein SAR 97.2 0.00019 6.5E-09 57.8 3.2 30 73-103 17-46 (190)
243 1lv7_A FTSH; alpha/beta domain 97.2 0.00015 5.2E-09 61.3 2.6 20 83-102 48-67 (257)
244 2rhm_A Putative kinase; P-loop 97.2 0.00019 6.5E-09 57.6 3.1 25 78-102 3-27 (193)
245 1ypw_A Transitional endoplasmi 97.2 0.00041 1.4E-08 68.7 5.9 43 74-120 232-274 (806)
246 2ze6_A Isopentenyl transferase 97.1 0.00023 7.7E-09 60.6 3.4 21 82-102 3-23 (253)
247 1via_A Shikimate kinase; struc 97.1 0.0002 6.9E-09 56.9 2.9 21 82-102 6-26 (175)
248 1sxj_C Activator 1 40 kDa subu 97.1 0.00016 5.3E-09 64.0 2.4 27 76-102 40-68 (340)
249 3k53_A Ferrous iron transport 97.1 0.00021 7.1E-09 61.2 3.1 22 82-103 5-26 (271)
250 1ex7_A Guanylate kinase; subst 97.1 0.00024 8.4E-09 57.8 3.2 20 83-102 4-23 (186)
251 2p5t_B PEZT; postsegregational 97.1 0.00016 5.4E-09 61.4 2.1 39 78-120 30-68 (253)
252 3trf_A Shikimate kinase, SK; a 97.1 0.00029 1E-08 56.3 3.6 24 79-102 4-27 (185)
253 3ihw_A Centg3; RAS, centaurin, 97.1 0.00061 2.1E-08 54.5 5.4 39 82-120 22-67 (184)
254 2v54_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 56.8 3.8 24 79-102 3-26 (204)
255 1ly1_A Polynucleotide kinase; 97.1 0.00031 1.1E-08 55.6 3.5 22 81-102 3-24 (181)
256 3iij_A Coilin-interacting nucl 97.1 0.00028 9.7E-09 56.2 3.1 25 78-102 9-33 (180)
257 1uf9_A TT1252 protein; P-loop, 97.0 0.00032 1.1E-08 56.7 3.3 23 80-102 8-30 (203)
258 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00033 1.1E-08 63.2 3.5 36 79-116 34-69 (392)
259 1gtv_A TMK, thymidylate kinase 97.0 0.00014 4.7E-09 59.5 0.9 21 82-102 2-22 (214)
260 2c95_A Adenylate kinase 1; tra 97.0 0.00036 1.2E-08 56.1 3.4 25 78-102 7-31 (196)
261 3dm5_A SRP54, signal recogniti 97.0 0.0034 1.2E-07 57.8 10.2 40 79-120 99-138 (443)
262 2plr_A DTMP kinase, probable t 97.0 0.0004 1.4E-08 56.4 3.7 24 79-102 3-26 (213)
263 1tev_A UMP-CMP kinase; ploop, 97.0 0.00042 1.4E-08 55.5 3.5 23 80-102 3-25 (196)
264 2wwf_A Thymidilate kinase, put 97.0 0.00041 1.4E-08 56.5 3.4 25 78-102 8-32 (212)
265 1jal_A YCHF protein; nucleotid 97.0 0.00072 2.5E-08 60.7 5.2 38 80-117 2-48 (363)
266 1nn5_A Similar to deoxythymidy 97.0 0.00043 1.5E-08 56.5 3.3 25 78-102 7-31 (215)
267 1xjc_A MOBB protein homolog; s 96.9 0.00049 1.7E-08 55.2 3.5 22 81-102 5-26 (169)
268 1gvn_B Zeta; postsegregational 96.9 0.0004 1.4E-08 60.3 3.1 25 78-102 31-55 (287)
269 2ged_A SR-beta, signal recogni 96.9 0.0005 1.7E-08 54.9 3.5 24 80-103 48-71 (193)
270 3ake_A Cytidylate kinase; CMP 96.9 0.00048 1.7E-08 55.8 3.4 21 82-102 4-24 (208)
271 2z0h_A DTMP kinase, thymidylat 96.9 0.0005 1.7E-08 55.3 3.4 21 82-102 2-22 (197)
272 3b1v_A Ferrous iron uptake tra 96.9 0.00049 1.7E-08 59.3 3.4 22 82-103 5-26 (272)
273 3llm_A ATP-dependent RNA helic 96.9 0.00035 1.2E-08 58.4 2.5 26 77-102 73-98 (235)
274 1nks_A Adenylate kinase; therm 96.9 0.00047 1.6E-08 55.0 3.1 21 82-102 3-23 (194)
275 3cf0_A Transitional endoplasmi 96.9 0.00058 2E-08 59.4 3.5 26 77-102 46-71 (301)
276 2bwj_A Adenylate kinase 5; pho 96.8 0.00061 2.1E-08 54.8 3.3 25 78-102 10-34 (199)
277 1z2a_A RAS-related protein RAB 96.8 0.00068 2.3E-08 52.4 3.4 23 82-104 7-29 (168)
278 2ce2_X GTPase HRAS; signaling 96.8 0.00064 2.2E-08 52.2 3.2 23 82-104 5-27 (166)
279 1kao_A RAP2A; GTP-binding prot 96.8 0.00075 2.6E-08 52.0 3.6 23 82-104 5-27 (167)
280 2vli_A Antibiotic resistance p 96.8 0.00046 1.6E-08 54.9 2.4 24 79-102 4-27 (183)
281 1u8z_A RAS-related protein RAL 96.8 0.00074 2.5E-08 52.1 3.5 23 82-104 6-28 (168)
282 1c1y_A RAS-related protein RAP 96.8 0.0011 3.6E-08 51.3 4.4 23 82-104 5-27 (167)
283 3fb4_A Adenylate kinase; psych 96.8 0.00068 2.3E-08 55.6 3.4 21 82-102 2-22 (216)
284 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00077 2.6E-08 53.3 3.6 23 82-104 6-28 (189)
285 1aky_A Adenylate kinase; ATP:A 96.8 0.00079 2.7E-08 55.5 3.8 24 79-102 3-26 (220)
286 2nzj_A GTP-binding protein REM 96.8 0.00074 2.5E-08 52.7 3.4 23 82-104 6-28 (175)
287 2erx_A GTP-binding protein DI- 96.8 0.0008 2.7E-08 52.2 3.5 23 82-104 5-27 (172)
288 1zd8_A GTP:AMP phosphotransfer 96.8 0.00068 2.3E-08 56.2 3.3 25 78-102 5-29 (227)
289 2dyk_A GTP-binding protein; GT 96.8 0.0008 2.7E-08 51.7 3.5 23 82-104 3-25 (161)
290 3q85_A GTP-binding protein REM 96.8 0.00081 2.8E-08 52.2 3.4 22 82-103 4-25 (169)
291 2pbr_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 53.8 3.4 21 82-102 2-22 (195)
292 3q72_A GTP-binding protein RAD 96.8 0.00058 2E-08 52.9 2.5 22 82-103 4-25 (166)
293 1fzq_A ADP-ribosylation factor 96.8 0.00057 2E-08 54.4 2.5 23 81-103 17-39 (181)
294 3dl0_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 55.2 3.4 21 82-102 2-22 (216)
295 1z0j_A RAB-22, RAS-related pro 96.7 0.00088 3E-08 51.9 3.5 23 82-104 8-30 (170)
296 1z08_A RAS-related protein RAB 96.7 0.00088 3E-08 52.0 3.5 23 82-104 8-30 (170)
297 3lxw_A GTPase IMAP family memb 96.7 0.00082 2.8E-08 56.8 3.5 23 82-104 23-45 (247)
298 2pt5_A Shikimate kinase, SK; a 96.7 0.00089 3E-08 52.5 3.5 21 82-102 2-22 (168)
299 1e6c_A Shikimate kinase; phosp 96.7 0.00072 2.5E-08 53.2 2.9 22 81-102 3-24 (173)
300 1ky3_A GTP-binding protein YPT 96.7 0.0009 3.1E-08 52.5 3.5 23 82-104 10-32 (182)
301 1zuh_A Shikimate kinase; alpha 96.7 0.00095 3.2E-08 52.5 3.5 23 80-102 7-29 (168)
302 2cdn_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 54.0 3.8 25 78-102 18-42 (201)
303 1ek0_A Protein (GTP-binding pr 96.7 0.00094 3.2E-08 51.7 3.4 23 82-104 5-27 (170)
304 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00097 3.3E-08 52.2 3.5 23 82-104 9-31 (177)
305 3tw8_B RAS-related protein RAB 96.7 0.00079 2.7E-08 52.8 2.9 23 82-104 11-33 (181)
306 2lkc_A Translation initiation 96.7 0.0012 4E-08 51.8 3.9 27 78-104 6-32 (178)
307 1f6b_A SAR1; gtpases, N-termin 96.7 0.00057 2E-08 55.4 2.1 44 77-121 23-72 (198)
308 1ukz_A Uridylate kinase; trans 96.7 0.00096 3.3E-08 54.1 3.4 24 79-102 14-37 (203)
309 1qf9_A UMP/CMP kinase, protein 96.7 0.00084 2.9E-08 53.6 3.0 23 80-102 6-28 (194)
310 1g16_A RAS-related protein SEC 96.7 0.00088 3E-08 51.9 3.1 23 82-104 5-27 (170)
311 1svi_A GTP-binding protein YSX 96.7 0.00081 2.8E-08 53.7 2.9 24 81-104 24-47 (195)
312 3clv_A RAB5 protein, putative; 96.7 0.0012 4.3E-08 52.5 4.0 23 82-104 9-31 (208)
313 3pqc_A Probable GTP-binding pr 96.7 0.00084 2.9E-08 53.4 2.9 22 82-103 25-46 (195)
314 1zak_A Adenylate kinase; ATP:A 96.7 0.00078 2.7E-08 55.6 2.8 24 79-102 4-27 (222)
315 2fn4_A P23, RAS-related protei 96.7 0.00093 3.2E-08 52.3 3.1 23 82-104 11-33 (181)
316 4fcw_A Chaperone protein CLPB; 96.7 0.001 3.6E-08 57.4 3.7 34 80-115 47-80 (311)
317 2grj_A Dephospho-COA kinase; T 96.7 0.001 3.5E-08 54.3 3.4 24 79-102 11-34 (192)
318 2iyv_A Shikimate kinase, SK; t 96.7 0.00082 2.8E-08 53.6 2.8 22 81-102 3-24 (184)
319 2oil_A CATX-8, RAS-related pro 96.7 0.0011 3.7E-08 53.0 3.4 23 82-104 27-49 (193)
320 1r2q_A RAS-related protein RAB 96.6 0.0011 3.9E-08 51.2 3.4 23 82-104 8-30 (170)
321 3bc1_A RAS-related protein RAB 96.6 0.0011 3.8E-08 52.4 3.4 23 82-104 13-35 (195)
322 3t1o_A Gliding protein MGLA; G 96.6 0.0011 3.8E-08 52.6 3.4 22 82-103 16-37 (198)
323 1upt_A ARL1, ADP-ribosylation 96.6 0.0012 4.1E-08 51.3 3.4 25 80-104 7-31 (171)
324 3con_A GTPase NRAS; structural 96.6 0.0012 4.2E-08 52.4 3.6 23 82-104 23-45 (190)
325 1uj2_A Uridine-cytidine kinase 96.6 0.0011 3.8E-08 56.0 3.4 22 81-102 23-44 (252)
326 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 56.2 3.7 24 79-102 3-26 (260)
327 2hxs_A RAB-26, RAS-related pro 96.6 0.0013 4.4E-08 51.5 3.6 22 82-103 8-29 (178)
328 1r8s_A ADP-ribosylation factor 96.6 0.0012 4.3E-08 50.9 3.4 23 82-104 2-24 (164)
329 2cxx_A Probable GTP-binding pr 96.6 0.00097 3.3E-08 52.8 2.8 23 82-104 3-25 (190)
330 2dby_A GTP-binding protein; GD 96.6 0.001 3.5E-08 59.9 3.2 22 82-103 3-24 (368)
331 2y8e_A RAB-protein 6, GH09086P 96.6 0.0012 4.3E-08 51.5 3.4 23 82-104 16-38 (179)
332 2bme_A RAB4A, RAS-related prot 96.6 0.0015 5.3E-08 51.5 3.9 23 82-104 12-34 (186)
333 3reg_A RHO-like small GTPase; 96.6 0.0018 6.1E-08 51.8 4.3 24 82-105 25-48 (194)
334 1moz_A ARL1, ADP-ribosylation 96.6 0.00061 2.1E-08 53.8 1.5 24 80-103 18-41 (183)
335 3bos_A Putative DNA replicatio 96.6 0.0014 4.7E-08 54.0 3.7 24 79-102 51-74 (242)
336 3iby_A Ferrous iron transport 96.6 0.0011 3.7E-08 56.5 3.1 22 82-103 3-24 (256)
337 2a9k_A RAS-related protein RAL 96.6 0.0014 4.6E-08 51.7 3.4 23 82-104 20-42 (187)
338 2g6b_A RAS-related protein RAB 96.6 0.0014 4.7E-08 51.5 3.4 24 82-105 12-35 (180)
339 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.5E-08 54.5 3.4 21 82-102 2-22 (223)
340 2bov_A RAla, RAS-related prote 96.6 0.0014 4.7E-08 52.7 3.5 23 82-104 16-38 (206)
341 1z0f_A RAB14, member RAS oncog 96.6 0.0014 4.7E-08 51.2 3.4 23 82-104 17-39 (179)
342 3bwd_D RAC-like GTP-binding pr 96.6 0.0016 5.6E-08 51.1 3.8 24 81-104 9-32 (182)
343 3kkq_A RAS-related protein M-R 96.6 0.0015 5E-08 51.6 3.5 23 82-104 20-42 (183)
344 1vg8_A RAS-related protein RAB 96.5 0.0016 5.6E-08 52.4 3.8 23 82-104 10-32 (207)
345 2qby_A CDC6 homolog 1, cell di 96.5 0.0011 3.7E-08 58.6 2.8 25 78-102 43-67 (386)
346 1wf3_A GTP-binding protein; GT 96.5 0.0014 4.7E-08 57.2 3.5 24 82-105 9-32 (301)
347 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0017 5.8E-08 51.1 3.7 23 82-104 7-29 (186)
348 1nrj_B SR-beta, signal recogni 96.5 0.0015 5E-08 53.3 3.4 24 81-104 13-36 (218)
349 2efe_B Small GTP-binding prote 96.5 0.0016 5.4E-08 51.2 3.5 23 82-104 14-36 (181)
350 3tlx_A Adenylate kinase 2; str 96.5 0.0016 5.3E-08 54.9 3.6 24 79-102 28-51 (243)
351 2f6r_A COA synthase, bifunctio 96.5 0.0013 4.4E-08 56.8 3.1 23 80-102 75-97 (281)
352 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0019 6.6E-08 51.2 4.0 24 82-105 9-32 (184)
353 3bgw_A DNAB-like replicative h 96.5 0.0028 9.7E-08 58.3 5.6 42 77-120 194-235 (444)
354 3tkl_A RAS-related protein RAB 96.5 0.0016 5.5E-08 51.9 3.4 23 82-104 18-40 (196)
355 3a1s_A Iron(II) transport prot 96.5 0.0016 5.4E-08 55.5 3.5 22 82-103 7-28 (258)
356 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0018 6.2E-08 59.9 4.1 28 75-102 146-173 (473)
357 3t5g_A GTP-binding protein RHE 96.5 0.0015 5.3E-08 51.3 3.2 23 82-104 8-30 (181)
358 2gf9_A RAS-related protein RAB 96.5 0.0017 5.8E-08 51.7 3.4 23 82-104 24-46 (189)
359 3cbq_A GTP-binding protein REM 96.5 0.0011 3.9E-08 53.5 2.3 21 82-102 25-45 (195)
360 3oes_A GTPase rhebl1; small GT 96.5 0.0021 7.1E-08 51.8 3.9 25 80-104 24-48 (201)
361 2cjw_A GTP-binding protein GEM 96.5 0.0017 5.9E-08 52.2 3.4 21 82-102 8-28 (192)
362 2xtp_A GTPase IMAP family memb 96.4 0.0016 5.3E-08 55.1 3.1 24 81-104 23-46 (260)
363 2fg5_A RAB-22B, RAS-related pr 96.4 0.0016 5.6E-08 52.1 3.1 23 82-104 25-47 (192)
364 1e4v_A Adenylate kinase; trans 96.4 0.0016 5.3E-08 53.5 3.0 21 82-102 2-22 (214)
365 1ksh_A ARF-like protein 2; sma 96.4 0.0017 5.8E-08 51.4 3.1 26 79-104 17-42 (186)
366 2gf0_A GTP-binding protein DI- 96.4 0.0017 5.7E-08 51.9 3.1 23 82-104 10-32 (199)
367 1a7j_A Phosphoribulokinase; tr 96.4 0.00086 2.9E-08 58.3 1.4 24 79-102 4-27 (290)
368 3i8s_A Ferrous iron transport 96.4 0.0016 5.5E-08 55.9 3.1 22 82-103 5-26 (274)
369 3iev_A GTP-binding protein ERA 96.4 0.0018 6.1E-08 56.6 3.5 24 81-104 11-34 (308)
370 2a5j_A RAS-related protein RAB 96.4 0.0019 6.7E-08 51.5 3.4 23 82-104 23-45 (191)
371 3t5d_A Septin-7; GTP-binding p 96.4 0.0014 4.8E-08 56.1 2.6 23 82-104 10-32 (274)
372 1zbd_A Rabphilin-3A; G protein 96.4 0.002 7E-08 51.8 3.5 23 82-104 10-32 (203)
373 1z06_A RAS-related protein RAB 96.4 0.0021 7.1E-08 51.2 3.5 23 82-104 22-44 (189)
374 2w58_A DNAI, primosome compone 96.4 0.0021 7.3E-08 51.9 3.6 22 81-102 55-76 (202)
375 2atv_A RERG, RAS-like estrogen 96.4 0.0022 7.4E-08 51.5 3.6 25 80-104 28-52 (196)
376 3dz8_A RAS-related protein RAB 96.4 0.0018 6.1E-08 51.7 3.1 22 82-103 25-46 (191)
377 3be4_A Adenylate kinase; malar 96.4 0.0019 6.5E-08 53.2 3.2 24 79-102 4-27 (217)
378 2ew1_A RAS-related protein RAB 96.4 0.0018 6.3E-08 52.6 3.1 23 82-104 28-50 (201)
379 3c5c_A RAS-like protein 12; GD 96.3 0.0023 8E-08 51.0 3.6 23 82-104 23-45 (187)
380 2wsm_A Hydrogenase expression/ 96.3 0.0019 6.5E-08 52.8 3.1 22 81-102 31-52 (221)
381 1zd9_A ADP-ribosylation factor 96.3 0.0022 7.6E-08 51.1 3.4 25 81-105 23-47 (188)
382 1x3s_A RAS-related protein RAB 96.3 0.0023 7.7E-08 50.9 3.4 23 82-104 17-39 (195)
383 1gwn_A RHO-related GTP-binding 96.3 0.0027 9.3E-08 51.7 4.0 24 82-105 30-53 (205)
384 1jbk_A CLPB protein; beta barr 96.3 0.0027 9.1E-08 49.9 3.7 24 79-102 42-65 (195)
385 1zj6_A ADP-ribosylation factor 96.3 0.0021 7.1E-08 51.1 3.1 23 81-103 17-39 (187)
386 2p5s_A RAS and EF-hand domain 96.3 0.0023 8E-08 51.4 3.4 25 80-104 28-52 (199)
387 2fv8_A H6, RHO-related GTP-bin 96.3 0.0024 8.3E-08 51.7 3.5 23 82-104 27-49 (207)
388 4edh_A DTMP kinase, thymidylat 96.3 0.0025 8.6E-08 52.8 3.6 24 79-102 5-28 (213)
389 2iwr_A Centaurin gamma 1; ANK 96.3 0.0018 6E-08 50.9 2.6 24 82-105 9-32 (178)
390 2il1_A RAB12; G-protein, GDP, 96.3 0.0019 6.6E-08 51.7 2.9 23 82-104 28-50 (192)
391 4bas_A ADP-ribosylation factor 96.3 0.002 6.9E-08 51.4 3.0 26 79-104 16-41 (199)
392 2f7s_A C25KG, RAS-related prot 96.3 0.0035 1.2E-07 51.0 4.4 23 82-104 27-49 (217)
393 2o52_A RAS-related protein RAB 96.3 0.0021 7.1E-08 51.9 3.0 22 82-103 27-48 (200)
394 3cph_A RAS-related protein SEC 96.3 0.0024 8.3E-08 51.6 3.4 26 79-104 19-44 (213)
395 2qu8_A Putative nucleolar GTP- 96.3 0.0022 7.4E-08 53.0 3.1 25 81-105 30-54 (228)
396 4dhe_A Probable GTP-binding pr 96.3 0.00099 3.4E-08 54.5 1.0 25 80-104 29-53 (223)
397 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0021 7.3E-08 51.8 3.1 23 82-104 10-32 (206)
398 3d3q_A TRNA delta(2)-isopenten 96.3 0.0023 7.9E-08 56.9 3.4 22 81-102 8-29 (340)
399 1ak2_A Adenylate kinase isoenz 96.3 0.0028 9.5E-08 52.8 3.8 25 78-102 14-38 (233)
400 2h57_A ADP-ribosylation factor 96.3 0.0015 5.3E-08 52.0 2.1 24 80-103 21-44 (190)
401 1ltq_A Polynucleotide kinase; 96.3 0.0024 8.3E-08 55.0 3.5 22 81-102 3-24 (301)
402 2h17_A ADP-ribosylation factor 96.3 0.002 6.7E-08 51.0 2.6 24 81-104 22-45 (181)
403 3v9p_A DTMP kinase, thymidylat 96.2 0.002 6.8E-08 54.0 2.7 25 78-102 23-47 (227)
404 2q3h_A RAS homolog gene family 96.2 0.0027 9.2E-08 51.0 3.4 26 79-104 19-44 (201)
405 2fh5_B SR-beta, signal recogni 96.2 0.0028 9.5E-08 51.5 3.4 24 81-104 8-31 (214)
406 1jwy_B Dynamin A GTPase domain 96.2 0.0023 8E-08 55.4 3.1 23 82-104 26-48 (315)
407 3llu_A RAS-related GTP-binding 96.2 0.0025 8.6E-08 51.2 3.0 23 81-103 21-43 (196)
408 2atx_A Small GTP binding prote 96.2 0.003 1E-07 50.4 3.3 23 82-104 20-42 (194)
409 3q3j_B RHO-related GTP-binding 96.2 0.0043 1.5E-07 50.8 4.3 25 81-105 28-52 (214)
410 2j1l_A RHO-related GTP-binding 96.2 0.0026 9.1E-08 51.9 3.1 23 82-104 36-58 (214)
411 3h4m_A Proteasome-activating n 96.2 0.0031 1E-07 53.8 3.6 25 78-102 49-73 (285)
412 3lv8_A DTMP kinase, thymidylat 96.2 0.0029 9.9E-08 53.3 3.3 25 78-102 25-49 (236)
413 2h92_A Cytidylate kinase; ross 96.2 0.0027 9.2E-08 52.0 3.1 23 80-102 3-25 (219)
414 2gco_A H9, RHO-related GTP-bin 96.1 0.0028 9.5E-08 51.1 3.1 23 82-104 27-49 (201)
415 2fu5_C RAS-related protein RAB 96.1 0.0019 6.5E-08 50.9 1.9 22 82-103 10-31 (183)
416 4tmk_A Protein (thymidylate ki 96.1 0.0033 1.1E-07 52.1 3.4 24 79-102 2-25 (213)
417 3def_A T7I23.11 protein; chlor 96.1 0.003 1E-07 53.7 3.1 23 82-104 38-60 (262)
418 3crm_A TRNA delta(2)-isopenten 96.1 0.0032 1.1E-07 55.5 3.4 22 81-102 6-27 (323)
419 2qmh_A HPR kinase/phosphorylas 96.1 0.0048 1.7E-07 50.7 4.2 26 78-103 32-57 (205)
420 1l8q_A Chromosomal replication 96.1 0.0027 9.1E-08 55.5 2.9 23 80-102 37-59 (324)
421 4gzl_A RAS-related C3 botulinu 96.1 0.0033 1.1E-07 51.0 3.2 25 80-104 30-54 (204)
422 3exa_A TRNA delta(2)-isopenten 96.1 0.0037 1.2E-07 55.0 3.7 23 80-102 3-25 (322)
423 3cnl_A YLQF, putative uncharac 96.1 0.0031 1E-07 53.9 3.1 23 81-103 100-122 (262)
424 3a8t_A Adenylate isopentenyltr 96.1 0.0036 1.2E-07 55.6 3.6 25 78-102 38-62 (339)
425 2g3y_A GTP-binding protein GEM 96.1 0.0037 1.3E-07 51.5 3.4 22 82-103 39-60 (211)
426 2ocp_A DGK, deoxyguanosine kin 96.1 0.0034 1.2E-07 52.5 3.3 23 80-102 2-24 (241)
427 3zvl_A Bifunctional polynucleo 96.1 0.0033 1.1E-07 57.3 3.4 26 77-102 255-280 (416)
428 1njg_A DNA polymerase III subu 96.0 0.004 1.4E-07 50.7 3.6 21 82-102 47-67 (250)
429 2b6h_A ADP-ribosylation factor 96.0 0.0027 9.3E-08 50.9 2.5 24 80-103 29-52 (192)
430 2aka_B Dynamin-1; fusion prote 96.0 0.003 1E-07 54.2 2.9 24 82-105 28-51 (299)
431 1ypw_A Transitional endoplasmi 96.0 0.0011 3.8E-08 65.6 0.1 30 73-102 504-533 (806)
432 1h65_A Chloroplast outer envel 96.0 0.0033 1.1E-07 53.5 3.1 23 82-104 41-63 (270)
433 2p65_A Hypothetical protein PF 96.0 0.0034 1.2E-07 49.3 2.9 24 79-102 42-65 (187)
434 2hf9_A Probable hydrogenase ni 96.0 0.0035 1.2E-07 51.4 3.1 22 81-102 39-60 (226)
435 3ld9_A DTMP kinase, thymidylat 96.0 0.0043 1.5E-07 51.8 3.6 25 78-102 19-43 (223)
436 2j0v_A RAC-like GTP-binding pr 96.0 0.0039 1.3E-07 50.5 3.3 23 82-104 11-33 (212)
437 2hup_A RAS-related protein RAB 96.0 0.0038 1.3E-07 50.4 3.1 23 82-104 31-53 (201)
438 4dcu_A GTP-binding protein ENG 96.0 0.003 1E-07 58.2 2.7 23 81-103 24-46 (456)
439 3tmk_A Thymidylate kinase; pho 95.9 0.0042 1.4E-07 51.6 3.3 25 78-102 3-27 (216)
440 3cpj_B GTP-binding protein YPT 95.9 0.0046 1.6E-07 50.7 3.5 23 82-104 15-37 (223)
441 2i1q_A DNA repair and recombin 95.9 0.0045 1.6E-07 54.1 3.6 26 77-102 95-120 (322)
442 4djt_A GTP-binding nuclear pro 95.9 0.0017 5.9E-08 52.9 0.8 22 82-103 13-34 (218)
443 3umf_A Adenylate kinase; rossm 95.9 0.0043 1.5E-07 51.6 3.1 26 77-102 26-51 (217)
444 2z4s_A Chromosomal replication 95.9 0.0038 1.3E-07 57.4 3.0 23 80-102 130-152 (440)
445 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0053 1.8E-07 51.4 3.7 24 79-102 38-61 (262)
446 1ko7_A HPR kinase/phosphatase; 95.9 0.0077 2.6E-07 52.9 4.7 26 79-104 143-168 (314)
447 2yc2_C IFT27, small RAB-relate 95.8 0.0019 6.6E-08 51.8 0.8 22 82-103 22-43 (208)
448 1p5z_B DCK, deoxycytidine kina 95.8 0.003 1E-07 53.5 1.9 25 78-102 22-46 (263)
449 2x77_A ADP-ribosylation factor 95.8 0.0027 9.4E-08 50.4 1.5 23 81-103 23-45 (189)
450 3foz_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 53.8 3.4 23 80-102 10-32 (316)
451 2v3c_C SRP54, signal recogniti 95.7 0.0017 5.9E-08 59.6 0.1 38 81-120 100-137 (432)
452 1sxj_D Activator 1 41 kDa subu 95.7 0.0053 1.8E-07 53.7 3.2 21 82-102 60-80 (353)
453 4hlc_A DTMP kinase, thymidylat 95.7 0.0066 2.3E-07 49.9 3.5 23 80-102 2-24 (205)
454 3sr0_A Adenylate kinase; phosp 95.7 0.0066 2.3E-07 50.0 3.4 21 82-102 2-22 (206)
455 2zts_A Putative uncharacterize 95.7 0.0088 3E-07 49.5 4.1 25 77-101 27-51 (251)
456 1u94_A RECA protein, recombina 95.6 0.0084 2.9E-07 53.6 4.1 40 77-118 60-99 (356)
457 3gmt_A Adenylate kinase; ssgci 95.6 0.0073 2.5E-07 50.7 3.4 24 79-102 7-30 (230)
458 1wxq_A GTP-binding protein; st 95.5 0.0064 2.2E-07 55.2 3.1 23 82-104 2-24 (397)
459 3l0o_A Transcription terminati 95.5 0.0076 2.6E-07 54.6 3.4 28 75-102 170-197 (427)
460 2orw_A Thymidine kinase; TMTK, 95.5 0.0084 2.9E-07 48.3 3.3 23 79-101 2-25 (184)
461 3tqf_A HPR(Ser) kinase; transf 95.5 0.011 3.8E-07 47.5 3.9 27 78-104 14-40 (181)
462 2chg_A Replication factor C sm 95.5 0.0081 2.8E-07 48.2 3.2 21 82-102 40-60 (226)
463 1puj_A YLQF, conserved hypothe 95.4 0.0076 2.6E-07 52.0 3.1 24 80-103 120-143 (282)
464 3p32_A Probable GTPase RV1496/ 95.4 0.0084 2.9E-07 53.3 3.5 24 79-102 78-101 (355)
465 3gj0_A GTP-binding nuclear pro 95.4 0.0055 1.9E-07 50.1 2.1 21 82-102 17-38 (221)
466 3n70_A Transport activator; si 95.4 0.0087 3E-07 45.9 3.0 24 79-102 23-46 (145)
467 2v1u_A Cell division control p 95.4 0.0069 2.4E-07 53.4 2.7 25 78-102 42-66 (387)
468 2r62_A Cell division protease 95.4 0.0041 1.4E-07 52.5 1.1 20 83-102 47-66 (268)
469 2hjg_A GTP-binding protein ENG 95.3 0.0071 2.4E-07 55.3 2.7 22 82-103 5-26 (436)
470 3r7w_A Gtpase1, GTP-binding pr 95.3 0.0097 3.3E-07 51.8 3.3 24 80-103 3-26 (307)
471 3eph_A TRNA isopentenyltransfe 95.3 0.0094 3.2E-07 54.1 3.2 22 81-102 3-24 (409)
472 2x2e_A Dynamin-1; nitration, h 95.2 0.0085 2.9E-07 53.2 2.8 24 82-105 33-56 (353)
473 3th5_A RAS-related C3 botulinu 94.2 0.0033 1.1E-07 50.7 0.0 24 80-103 30-53 (204)
474 3syl_A Protein CBBX; photosynt 95.2 0.011 3.8E-07 50.8 3.4 24 79-102 66-89 (309)
475 3ec1_A YQEH GTPase; atnos1, at 95.2 0.01 3.5E-07 53.2 3.2 25 79-103 161-185 (369)
476 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.013 4.6E-07 51.3 3.6 24 79-102 44-67 (322)
477 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.015 5E-07 51.4 3.6 27 76-102 119-145 (331)
478 3hws_A ATP-dependent CLP prote 95.0 0.012 4.2E-07 52.2 3.2 24 79-102 50-73 (363)
479 3l0i_B RAS-related protein RAB 95.0 0.002 6.8E-08 51.9 -1.9 22 82-103 35-56 (199)
480 1d2n_A N-ethylmaleimide-sensit 95.0 0.014 4.6E-07 49.6 3.3 24 79-102 63-86 (272)
481 2qgz_A Helicase loader, putati 95.0 0.016 5.5E-07 50.5 3.7 23 80-102 152-174 (308)
482 2ck3_D ATP synthase subunit be 94.9 0.012 4.2E-07 54.4 2.9 31 72-102 145-175 (482)
483 1ofh_A ATP-dependent HSL prote 94.9 0.014 4.9E-07 49.9 3.2 23 80-102 50-72 (310)
484 3sjy_A Translation initiation 94.9 0.015 5.2E-07 52.5 3.4 21 82-102 10-30 (403)
485 3geh_A MNME, tRNA modification 94.9 0.014 4.8E-07 54.0 3.2 26 78-103 222-247 (462)
486 3h2y_A GTPase family protein; 94.8 0.012 4E-07 52.8 2.6 25 79-103 159-183 (368)
487 2qpt_A EH domain-containing pr 94.8 0.013 4.4E-07 55.4 2.9 24 81-104 66-89 (550)
488 3t15_A Ribulose bisphosphate c 94.8 0.016 5.5E-07 50.0 3.3 22 81-102 37-58 (293)
489 3uk6_A RUVB-like 2; hexameric 94.8 0.016 5.5E-07 51.1 3.3 24 79-102 69-92 (368)
490 2qen_A Walker-type ATPase; unk 94.8 0.018 6.2E-07 49.9 3.6 24 79-102 30-53 (350)
491 2qby_B CDC6 homolog 3, cell di 94.8 0.016 5.6E-07 51.2 3.4 23 80-102 45-67 (384)
492 3d8b_A Fidgetin-like protein 1 94.8 0.019 6.5E-07 51.0 3.7 24 79-102 116-139 (357)
493 3eie_A Vacuolar protein sortin 94.7 0.02 6.9E-07 50.0 3.6 24 79-102 50-73 (322)
494 3pvs_A Replication-associated 94.7 0.017 5.8E-07 53.1 3.2 21 82-102 52-72 (447)
495 2hjg_A GTP-binding protein ENG 94.6 0.019 6.4E-07 52.5 3.5 23 82-104 177-199 (436)
496 1lnz_A SPO0B-associated GTP-bi 94.6 0.017 5.7E-07 51.3 3.0 27 77-103 155-181 (342)
497 2j69_A Bacterial dynamin-like 94.6 0.025 8.4E-07 55.0 4.4 27 78-104 67-93 (695)
498 1f5n_A Interferon-induced guan 94.6 0.014 4.8E-07 55.6 2.6 25 80-104 38-62 (592)
499 1x6v_B Bifunctional 3'-phospho 94.6 0.02 6.7E-07 54.9 3.6 24 79-102 51-74 (630)
500 3pfi_A Holliday junction ATP-d 94.6 0.019 6.4E-07 50.1 3.2 22 81-102 56-77 (338)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.8e-38 Score=272.23 Aligned_cols=163 Identities=25% Similarity=0.366 Sum_probs=115.2
Q ss_pred EEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|++ ++||+|.+||++||+||||||||||+++|+| +..|++|+|.++|+++...+.....
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G--l~~p~~G~I~~~g~~~~~~~~~~~~- 78 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTEGEVYIDNIKTNDLDDDELT- 78 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEECTTCCHHHHH-
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCceEEEECCEEcccCCHHHHH-
Confidence 678899888851 7899999999999999999999999999998 7899999999999988654332110
Q ss_pred HHhhhHHHHHHHH-HhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHh---cCChhcH
Q psy2689 131 VLSADKNRVKLLK-ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---SIEADAA 206 (262)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 206 (262)
.+.. ....+.|. .. +++..+ ..+++..... .. .......
T Consensus 79 ---------~~~~~~i~~v~Q~--~~----------------l~~~~t---------v~enl~~~~~-~~~~~~~~~~~~ 121 (235)
T 3tif_A 79 ---------KIRRDKIGFVFQQ--FN----------------LIPLLT---------ALENVELPLI-FKYRGAMSGEER 121 (235)
T ss_dssp ---------HHHHHHEEEECTT--CC----------------CCTTSC---------HHHHHHHHHH-TCSSSCCCHHHH
T ss_pred ---------HHhhccEEEEecC--Cc----------------cCCCCc---------HHHHHHHHHH-hhhccCCCHHHH
Confidence 0110 11111110 00 000000 1112211110 11 1223344
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+|+.+...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp HHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 56788999999997544588999999999999999999999999999999999998
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-38 Score=267.70 Aligned_cols=163 Identities=26% Similarity=0.347 Sum_probs=116.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|++|+++||+||||||||||+|+|+| +..|++|+|.++|+++...+....
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~----- 76 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL--LDAPTEGKVFLEGKEVDYTNEKEL----- 76 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT--SSCCSEEEEEETTEECCSSCHHHH-----
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEECCCCCHHHH-----
Confidence 5899999999975 8999999999999999999999999999998 678999999999998754322110
Q ss_pred hhHHHHHHH-HHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLL-KECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~-~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
..+. .....+.+ ... +++..+ ..+++.... .+..........++.+
T Consensus 77 -----~~~~~~~i~~v~q---~~~---------------l~~~~t---------v~e~l~~~~-~~~~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 77 -----SLLRNRKLGFVFQ---FHY---------------LIPELT---------ALENVIVPM-LKMGKPKKEAKERGEY 123 (224)
T ss_dssp -----HHHHHHHEEEECS---SCC---------------CCTTSC---------HHHHHHHHH-HHTTCCHHHHHHHHHH
T ss_pred -----HHHHhCcEEEEec---Ccc---------------cCCCCC---------HHHHHHhHH-HHcCCCHHHHHHHHHH
Confidence 0010 11111110 000 000000 112221111 1112222334567889
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 172 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCC
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 99999997 46788899999999999999999999999999999999999
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-37 Score=271.74 Aligned_cols=163 Identities=27% Similarity=0.359 Sum_probs=116.6
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+|+++|++++|++ ++||+|.+||++||+||||||||||+|+|+| +..|++|+|.++|+++......
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G--l~~p~~G~I~~~G~~i~~~~~~------ 78 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG--ILKPSSGRILFDNKPIDYSRKG------ 78 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEETTEECCCSHHH------
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc--CCCCCCeEEEECCEECCccccc------
Confidence 5899999999964 8999999999999999999999999999998 6789999999999987421110
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...+......+.|.. .. .+.. ....+++.... ............++.+
T Consensus 79 -----~~~~~~~ig~v~Q~~--~~---------------------~~~~---~tv~e~l~~~~-~~~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 79 -----IMKLRESIGIVFQDP--DN---------------------QLFS---ASVYQDVSFGA-VNMKLPEDEIRKRVDN 126 (275)
T ss_dssp -----HHHHHHSEEEECSSG--GG---------------------TCCS---SBHHHHHHHHH-HTSCCCHHHHHHHHHH
T ss_pred -----HHHHhCcEEEEEcCc--cc---------------------cccc---CcHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 011111111111100 00 0000 00111221111 1122333445677999
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD 175 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 99999996 56789999999999999999999999999999999999998
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.8e-38 Score=272.77 Aligned_cols=163 Identities=26% Similarity=0.378 Sum_probs=115.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+|+|+| +..|++|+|.++|+++. .+....
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G--l~~p~~G~I~~~g~~i~-~~~~~~----- 95 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL--LEDFDEGEIIIDGINLK-AKDTNL----- 95 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEETTEESS-STTCCH-----
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc--CCCCCCcEEEECCEECC-CccccH-----
Confidence 5999999999976 8999999999999999999999999999998 67899999999998874 111000
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+......+.+ ... +++..+ ..+++......+..........++.++
T Consensus 96 -----~~~~~~i~~v~Q---~~~---------------l~~~~t---------v~e~l~~~~~~~~~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 96 -----NKVREEVGMVFQ---RFN---------------LFPHMT---------VLNNITLAPMKVRKWPREKAEAKAMEL 143 (263)
T ss_dssp -----HHHHHHEEEECS---SCC---------------CCTTSC---------HHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred -----HHHhCcEEEEeC---CCc---------------CCCCCC---------HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 001111111110 000 000000 112221111011122223345678899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD 191 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 9999997 46788999999999999999999999999999999999999
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.6e-38 Score=284.28 Aligned_cols=164 Identities=28% Similarity=0.404 Sum_probs=120.2
Q ss_pred eeEEEeeeeEeeCC---------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 58 VDIKVENFSLSPCL---------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 58 ~~i~i~~v~~~~~~---------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
.+|+++|++++|+. +|||+|.+||++||+||||||||||+|+|+| +..|++|+|.++|+++...+...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G--L~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT--SSCCSEEEEEETTEECSSCCHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc--CCCCCceEEEECCEECCcCCHHHH
Confidence 36999999999952 8999999999999999999999999999998 789999999999999865543211
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
. .+......+.| .. .+++..+ ..+++.... .+..........
T Consensus 101 ~----------~~r~~Ig~v~Q---~~---------------~l~~~~T---------V~env~~~~-~~~~~~~~~~~~ 142 (366)
T 3tui_C 101 T----------KARRQIGMIFQ---HF---------------NLLSSRT---------VFGNVALPL-ELDNTPKDEVKR 142 (366)
T ss_dssp H----------HHHTTEEEECS---SC---------------CCCTTSC---------HHHHHHHHH-HHSCCCHHHHHH
T ss_pred H----------HHhCcEEEEeC---CC---------------ccCCCCC---------HHHHHHHHH-HhcCCCHHHHHH
Confidence 1 11111111110 00 0000011 122222211 122334445667
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++|+.+|+. ...++++++|||||||||+|||||+.+|+||||||||++||
T Consensus 143 ~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD 195 (366)
T 3tui_C 143 RVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195 (366)
T ss_dssp HHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSC
T ss_pred HHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 899999999997 56789999999999999999999999999999999999998
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-37 Score=270.60 Aligned_cols=164 Identities=30% Similarity=0.376 Sum_probs=115.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc----------C
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA----------S 123 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~----------~ 123 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEEcccccccccccccc
Confidence 4899999999976 8999999999999999999999999999998 678999999999988741 1
Q ss_pred chhHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCCh
Q psy2689 124 DDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203 (262)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (262)
+... ...+......+.+ ... +++..+ ..+++......+.....
T Consensus 84 ~~~~----------~~~~~~~i~~v~Q---~~~---------------l~~~lt---------v~e~l~~~~~~~~~~~~ 126 (262)
T 1b0u_A 84 DKNQ----------LRLLRTRLTMVFQ---HFN---------------LWSHMT---------VLENVMEAPIQVLGLSK 126 (262)
T ss_dssp CHHH----------HHHHHHHEEEECS---SCC---------------CCTTSC---------HHHHHHHHHHHTTCCCH
T ss_pred Chhh----------HHHHhcceEEEec---Ccc---------------cCCCCc---------HHHHHHhhHHHhcCCCH
Confidence 1100 0011111111111 000 000000 11222111111112222
Q ss_pred hcHHHHHHHHHHhCCCChhh-hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 204 DAAEPRARRILAGLGFTKEM-QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 204 ~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.....++.++++.+|+. .. .++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 127 ~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD 185 (262)
T 1b0u_A 127 HDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185 (262)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSC
T ss_pred HHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 33456788999999997 45 788999999999999999999999999999999999999
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.2e-38 Score=272.75 Aligned_cols=157 Identities=26% Similarity=0.332 Sum_probs=116.3
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.+|+++|+++.|++ ++||+|.+||++||+||||||||||+|+|+| +..|++|+|.++|+++...+.....
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p~~G~I~~~g~~~~~~~~~~~~--- 84 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG--YLSPSHGECHLLGQNLNSWQPKALA--- 84 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS--SSCCSSCEEEETTEETTTSCHHHHH---
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCcEEEECCEECCcCCHHHHh---
Confidence 36899999999986 8999999999999999999999999999998 7889999999999998654322111
Q ss_pred hhhHHHHHHHHHhhHHHHhh--hcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVE--ASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.....+.+.. ....+ ..+++... ...........++
T Consensus 85 ----------~~i~~v~q~~~~~~~~t-----------------------------v~e~l~~~---~~~~~~~~~~~~~ 122 (266)
T 4g1u_C 85 ----------RTRAVMRQYSELAFPFS-----------------------------VSEVIQMG---RAPYGGSQDRQAL 122 (266)
T ss_dssp ----------HHEEEECSCCCCCSCCB-----------------------------HHHHHHGG---GTTSCSTTHHHHH
T ss_pred ----------heEEEEecCCccCCCCC-----------------------------HHHHHHhh---hhhcCcHHHHHHH
Confidence 0111111000 00111 11111100 0011223445678
Q ss_pred HHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHcc------CCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~------~P~lLlLDEPT~~LD 262 (262)
.++++.+|+. ...++++.+|||||||||+|||||++ +|++|||||||++||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD 179 (266)
T 4g1u_C 123 QQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179 (266)
T ss_dssp HHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCC
T ss_pred HHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCC
Confidence 8999999997 46788899999999999999999999 999999999999999
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-37 Score=283.05 Aligned_cols=158 Identities=29% Similarity=0.425 Sum_probs=118.7
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+||+++|+||||||||||||+|+| +..|++|+|.++|+++...+...
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG--l~~p~~G~I~i~G~~~~~~~~~~------ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAE------ 74 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT--SSCCSEEEEEETTEECTTCCGGG------
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc--CCCCCCeEEEECCEECCCCCHHH------
Confidence 3889999999987 8999999999999999999999999999998 78999999999999885433210
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
..+.+ +.| .. .+++.++ ..+++.... ............++.++
T Consensus 75 ---r~ig~------VfQ---~~---------------~l~p~lt---------V~eni~~~~-~~~~~~~~~~~~~v~~~ 117 (381)
T 3rlf_A 75 ---RGVGM------VFQ---SY---------------ALYPHLS---------VAENMSFGL-KLAGAKKEVINQRVNQV 117 (381)
T ss_dssp ---SCEEE------ECT---TC---------------CCCTTSC---------HHHHHTHHH-HHTTCCHHHHHHHHHHH
T ss_pred ---CCEEE------Eec---CC---------------cCCCCCC---------HHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 00000 000 00 0111111 112222111 12233444566789999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 118 l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD 165 (381)
T 3rlf_A 118 AEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (381)
T ss_dssp HHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 9999997 57889999999999999999999999999999999999998
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.3e-38 Score=283.57 Aligned_cols=162 Identities=25% Similarity=0.348 Sum_probs=116.4
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+||+++|+||||||||||||+|+| +..|++|+|.++|+++....... .
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG--l~~p~~G~I~i~G~~i~~~~~~~-----~ 76 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG--FEQPDSGEISLSGKTIFSKNTNL-----P 76 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT--SSCCSEEEEEETTEEEESSSCBC-----C
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc--CCCCCCcEEEECCEECccccccc-----c
Confidence 4899999999986 8999999999999999999999999999998 78999999999999883211100 0
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.....+.+..|.. .+++.++ ..+++.... ............++.++
T Consensus 77 ~~~r~ig~vfQ~~------------------------~l~p~lt---------V~eni~~~l-~~~~~~~~~~~~~v~~~ 122 (359)
T 3fvq_A 77 VRERRLGYLVQEG------------------------VLFPHLT---------VYRNIAYGL-GNGKGRTAQERQRIEAM 122 (359)
T ss_dssp GGGSCCEEECTTC------------------------CCCTTSC---------HHHHHHTTS-TTSSCCSHHHHHHHHHH
T ss_pred hhhCCEEEEeCCC------------------------cCCCCCC---------HHHHHHHHH-HHcCCChHHHHHHHHHH
Confidence 0000011100000 0111111 111111100 01112233456778999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD 170 (359)
T 3fvq_A 123 LELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170 (359)
T ss_dssp HHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9999997 57889999999999999999999999999999999999999
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-37 Score=268.90 Aligned_cols=159 Identities=29% Similarity=0.363 Sum_probs=114.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
.|+++|++++|++ ++||+|.+|+++||+||||||||||+|+|+| +..|++|+|.++|+++... ..
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G--l~~p~~G~I~~~g~~~~~~-~~------- 84 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVTVFGKNVVEE-PH------- 84 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEETTEETTTC-HH-------
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEECCEECCcc-HH-------
Confidence 4889999999975 8999999999999999999999999999998 6789999999999887421 10
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.+......+.+ ... +++..+ ..+++... ..+..........++.++
T Consensus 85 ------~~~~~i~~v~q---~~~---------------l~~~lt---------v~enl~~~-~~~~~~~~~~~~~~~~~~ 130 (256)
T 1vpl_A 85 ------EVRKLISYLPE---EAG---------------AYRNMQ---------GIEYLRFV-AGFYASSSSEIEEMVERA 130 (256)
T ss_dssp ------HHHTTEEEECT---TCC---------------CCTTSB---------HHHHHHHH-HHHHCCCHHHHHHHHHHH
T ss_pred ------HHhhcEEEEcC---CCC---------------CCCCCc---------HHHHHHHH-HHHcCCChHHHHHHHHHH
Confidence 00000111110 000 000000 11222111 111122222334578889
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 131 l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD 178 (256)
T 1vpl_A 131 TEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178 (256)
T ss_dssp HHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccC
Confidence 9999997 46788899999999999999999999999999999999999
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-37 Score=269.71 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=114.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|++|+++||+||||||||||+|+|+| +..|++|+|.++|+++.......
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~~~~~------ 78 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG--FLKADEGRVYFENKDITNKEPAE------ 78 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEECTTCCHHH------
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCEECCCCCHHH------
Confidence 5899999999976 8999999999999999999999999999998 67899999999999874322110
Q ss_pred hhHHHHHHHHHhhHHHHh--hhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHH-Hh---cCChhcH
Q psy2689 134 ADKNRVKLLKECSKLEQV--EASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE-LK---SIEADAA 206 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~--~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~---~~~~~~~ 206 (262)
.+......+.+- .....+ .+|+.+..... . . ..+.. +. .......
T Consensus 79 ------~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-------------------~--~-~~~~~~~~~~~~~~~~~~ 130 (257)
T 1g6h_A 79 ------LYHYGIVRTFQTPQPLKEMTVLENLLIGEICP-------------------G--E-SPLNSLFYKKWIPKEEEM 130 (257)
T ss_dssp ------HHHHTEEECCCCCGGGGGSBHHHHHHGGGTST-------------------T--S-CHHHHHHHCSSCCCCHHH
T ss_pred ------HHhCCEEEEccCCccCCCCcHHHHHHHHHhhh-------------------c--c-CcccccccccccCCHHHH
Confidence 000001111100 000011 11111110000 0 0 00000 00 0111233
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 131 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 185 (257)
T 1g6h_A 131 VEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185 (257)
T ss_dssp HHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred HHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 46788999999997 56788899999999999999999999999999999999999
No 12
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.8e-37 Score=267.91 Aligned_cols=166 Identities=23% Similarity=0.256 Sum_probs=113.9
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc--cCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE--ASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~--~~~~~~~~~ 130 (262)
.+|+++|++++|++ ++||+|.+|+++||+||||||||||+|+|+| +..|++|+|.++|+++. ..+.....
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~- 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA--YEPATSGTVNLFGKMPGKVGYSAETVR- 96 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEETTBCCC---CCHHHHH-
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCeEEEECCEEcccccCCHHHHc-
Confidence 46999999999976 8999999999999999999999999999998 67899999999998874 22211110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
..+.+..|...+. .....+ .+|+.+... ....+..........+
T Consensus 97 ------~~i~~v~Q~~~~~--~~~~ltv~enl~~~~~---------------------------~~~~~~~~~~~~~~~~ 141 (279)
T 2ihy_A 97 ------QHIGFVSHSLLEK--FQEGERVIDVVISGAF---------------------------KSIGVYQDIDDEIRNE 141 (279)
T ss_dssp ------TTEEEECHHHHTT--SCTTSBHHHHHHTTC------------------------------------CCHHHHHH
T ss_pred ------CcEEEEEcCcccc--cCCCCCHHHHHHhhhh---------------------------hccccccCCcHHHHHH
Confidence 0011111100000 000011 112111000 0000000111223457
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 142 ~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD 193 (279)
T 2ihy_A 142 AHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193 (279)
T ss_dssp HHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred HHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 88999999996 56788899999999999999999999999999999999999
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.1e-37 Score=277.76 Aligned_cols=161 Identities=31% Similarity=0.392 Sum_probs=118.7
Q ss_pred CceeEEEeeeeEee-CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 56 NSVDIKVENFSLSP-CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 56 ~~~~i~i~~v~~~~-~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
.+..|+++|++++| ++ ++||+|.+||+++|+||||||||||||+|+| +..|++|+|.++|+++...+..
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~--- 85 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG--LERPTKGDVWIGGKRVTDLPPQ--- 85 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT--SSCCSEEEEEETTEECTTCCGG---
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEECCEECCcCChh---
Confidence 45679999999999 64 8999999999999999999999999999998 7889999999999987432110
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
...+.+..|. ..+++.++ ..+++.... ............+
T Consensus 86 ------~r~ig~v~Q~------------------------~~l~~~lt---------v~eni~~~l-~~~~~~~~~~~~~ 125 (355)
T 1z47_A 86 ------KRNVGLVFQN------------------------YALFQHMT---------VYDNVSFGL-REKRVPKDEMDAR 125 (355)
T ss_dssp ------GSSEEEECGG------------------------GCCCTTSC---------HHHHHHHHH-HHTTCCHHHHHHH
T ss_pred ------hCcEEEEecC------------------------cccCCCCC---------HHHHHHHHH-HHcCCCHHHHHHH
Confidence 0000000000 00011111 122222111 1122333345667
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 126 v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 177 (355)
T 1z47_A 126 VRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177 (355)
T ss_dssp HHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSS
T ss_pred HHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 89999999997 56789999999999999999999999999999999999999
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-37 Score=264.14 Aligned_cols=160 Identities=20% Similarity=0.289 Sum_probs=112.3
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|++|+++||+||||||||||+|+|+| +..|++|+|.++|+++........
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~----- 78 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPAHVI----- 78 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEECTTCCHHHH-----
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEECCEECCCCCHHHH-----
Confidence 5899999999976 8999999999999999999999999999998 678999999999998753321100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.......+.+ ... +++..+ ..+++... .............+.++
T Consensus 79 -------~~~~i~~v~q---~~~---------------l~~~lt---------v~enl~~~--~~~~~~~~~~~~~~~~~ 122 (240)
T 1ji0_A 79 -------NRMGIALVPE---GRR---------------IFPELT---------VYENLMMG--AYNRKDKEGIKRDLEWI 122 (240)
T ss_dssp -------HHTTEEEECS---SCC---------------CCTTSB---------HHHHHHGG--GTTCCCSSHHHHHHHHH
T ss_pred -------HhCCEEEEec---CCc---------------cCCCCc---------HHHHHHHh--hhcCCCHHHHHHHHHHH
Confidence 0000111110 000 000000 11111100 00011122334567788
Q ss_pred HHhCC-CChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLG-FTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lg-l~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++ +. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 171 (240)
T 1ji0_A 123 FSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171 (240)
T ss_dssp HHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred HHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 99994 85 45678899999999999999999999999999999999998
No 15
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.7e-36 Score=262.24 Aligned_cols=163 Identities=22% Similarity=0.226 Sum_probs=109.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+++|+|.....|++|+|.++|+++...+....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~----- 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER----- 77 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH-----
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH-----
Confidence 4889999999976 899999999999999999999999999999831167899999999998754321110
Q ss_pred hhHHHHHHHHHhhHHHHh--hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhc--CChhcHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS--IEADAAEPR 209 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 209 (262)
. ......+.+. ..+.++ ..+++......... ........+
T Consensus 78 -----~--~~~i~~v~q~~~~~~~~t-----------------------------v~e~l~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 2d2e_A 78 -----A--RKGLFLAFQYPVEVPGVT-----------------------------IANFLRLALQAKLGREVGVAEFWTK 121 (250)
T ss_dssp -----H--HTTBCCCCCCCC-CCSCB-----------------------------HHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred -----H--hCcEEEeccCCccccCCC-----------------------------HHHHHHHHHHhhccccCCHHHHHHH
Confidence 0 0000000000 000011 11111111111111 111223456
Q ss_pred HHHHHHhCCCChhhhcCCCCC-CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKE-FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~-LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+.....++++.+ |||||||||+|||||+.+|++|||||||++||
T Consensus 122 ~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp HHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 888999999954567888998 99999999999999999999999999999999
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-36 Score=273.32 Aligned_cols=158 Identities=30% Similarity=0.432 Sum_probs=116.5
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||||+|+| +..|++|+|.++|+++...+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~------- 73 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG--IYKPTSGKIYFDEKDVTELPPK------- 73 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT--SSCCSEEEEEETTEECTTSCGG-------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc--CCCCCceEEEECCEECCcCCHh-------
Confidence 3889999999975 8999999999999999999999999999998 7889999999999987532211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+ +.| .. .+++.++ ..+++.... ............++.++
T Consensus 74 --~r~ig~------v~Q---~~---------------~l~~~lt---------v~eni~~~~-~~~~~~~~~~~~~v~~~ 117 (362)
T 2it1_A 74 --DRNVGL------VFQ---NW---------------ALYPHMT---------VYKNIAFPL-ELRKAPREEIDKKVREV 117 (362)
T ss_dssp --GTTEEE------ECT---TC---------------CCCTTSC---------HHHHHHHHH-HHTTCCHHHHHHHHHHH
T ss_pred --HCcEEE------Eec---Cc---------------ccCCCCC---------HHHHHHHHH-HhcCCCHHHHHHHHHHH
Confidence 000000 000 00 0011111 122222111 11223333455678999
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 118 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (362)
T 2it1_A 118 AKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165 (362)
T ss_dssp HHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSC
T ss_pred HHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 9999997 46789999999999999999999999999999999999999
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.9e-36 Score=275.10 Aligned_cols=157 Identities=31% Similarity=0.435 Sum_probs=114.9
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||||+|+| +..|++|+|.++|+++...+... ..+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~~--r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKD--RNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT--SSCCSEEEEEETTEECTTSCGGG--GTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc--CCCCCceEEEECCEECCCCChhh--CcEE
Confidence 4899999999976 8999999999999999999999999999998 78899999999999875332110 0001
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (262)
...|...++ +.++ ..|+.+.. ............++.+
T Consensus 87 ~v~Q~~~l~-----------~~ltv~eni~~~~-------------------------------~~~~~~~~~~~~~v~~ 124 (372)
T 1v43_A 87 MVFQSYAVW-----------PHMTVYENIAFPL-------------------------------KIKKFPKDEIDKRVRW 124 (372)
T ss_dssp EEEC-----------------CCCHHHHHHTTC-------------------------------C--CCCHHHHHHHHHH
T ss_pred EEecCcccC-----------CCCCHHHHHHHHH-------------------------------HhcCCCHHHHHHHHHH
Confidence 111110000 1111 11111100 0011222334567899
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++++|||||||||+|||||+.+|++|||||||++||
T Consensus 125 ~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 173 (372)
T 1v43_A 125 AAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173 (372)
T ss_dssp HHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99999997 56789999999999999999999999999999999999999
No 18
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.9e-36 Score=263.16 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=113.1
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|.+|+++||+||||||||||+|+|+|.....|++|+|.++|+++........
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~----- 94 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR----- 94 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH-----
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH-----
Confidence 5999999999976 899999999999999999999999999999841146889999999998753321110
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHH---hc---CChhcHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL---KS---IEADAAE 207 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~---~~~~~~~ 207 (262)
. ......+.+ ... +++..+ ..+++......+ .. .......
T Consensus 95 -----~--~~~i~~v~Q---~~~---------------l~~~~t---------v~e~~~~~~~~~~~~~~~~~~~~~~~~ 140 (267)
T 2zu0_C 95 -----A--GEGIFMAFQ---YPV---------------EIPGVS---------NQFFLQTALNAVRSYRGQETLDRFDFQ 140 (267)
T ss_dssp -----H--HHTEEEECS---SCC---------------CCTTCB---------HHHHHHHHHHHHHHGGGCCCCCHHHHH
T ss_pred -----h--hCCEEEEcc---Ccc---------------cccccc---------HHHHHHHHHHhhhhhhccccCCHHHHH
Confidence 0 000000100 000 000000 111111111001 01 1122334
Q ss_pred HHHHHHHHhCCCChhhhcCCCC-CCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTK-EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~-~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+.....++++. +|||||||||+|||||+.+|+||||||||++||
T Consensus 141 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD 196 (267)
T 2zu0_C 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196 (267)
T ss_dssp HHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 5788999999996445678886 599999999999999999999999999999999
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.5e-36 Score=272.89 Aligned_cols=158 Identities=27% Similarity=0.400 Sum_probs=116.4
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc------CchhH
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA------SDDSA 127 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~------~~~~~ 127 (262)
+|+++|++++|++ ++||+|.+||+++|+||||||||||||+|+| +..|++|+|.++|+++.. .+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT--SSCCSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc--CCCCCccEEEECCEECccccccccCCHh-
Confidence 4889999999976 8999999999999999999999999999998 788999999999998743 1110
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHH
Q psy2689 128 VNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE 207 (262)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (262)
...+ ..+. +.. .+++.++ ..+++.... ...........
T Consensus 80 --------~r~i------g~v~---Q~~---------------~l~~~lt---------v~eni~~~~-~~~~~~~~~~~ 117 (372)
T 1g29_1 80 --------DRDI------AMVF---QSY---------------ALYPHMT---------VYDNIAFPL-KLRKVPRQEID 117 (372)
T ss_dssp --------GSSE------EEEC---SCC---------------CCCTTSC---------HHHHHHHHH-HHTTCCHHHHH
T ss_pred --------HCCE------EEEe---CCC---------------ccCCCCC---------HHHHHHHHH-HHcCCCHHHHH
Confidence 0000 0000 000 0011111 122222111 12223333455
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++++.+|+. ...++++++|||||||||+|||||+.+|++|||||||++||
T Consensus 118 ~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 171 (372)
T 1g29_1 118 QRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171 (372)
T ss_dssp HHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSC
T ss_pred HHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 6789999999997 56789999999999999999999999999999999999999
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-37 Score=276.49 Aligned_cols=158 Identities=28% Similarity=0.375 Sum_probs=114.0
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
+|+++|++++|++ ++||+|++|++++|+||||||||||||+|+| +..|++|+|.++|+++...+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~------- 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG--IYKPTSGEIYFDDVLVNDIPPK------- 73 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT--SSCCSEEEEEETTEECTTSCGG-------
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC--CCCCCccEEEECCEECCCCChh-------
Confidence 3889999999975 8999999999999999999999999999998 7889999999999987533211
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
...+.+ +.| .. .+++.++ ..+++.... ............++.++
T Consensus 74 --~r~ig~------v~Q---~~---------------~l~~~lt---------v~eni~~~~-~~~~~~~~~~~~~v~~~ 117 (359)
T 2yyz_A 74 --YREVGM------VFQ---NY---------------ALYPHMT---------VFENIAFPL-RARRISKDEVEKRVVEI 117 (359)
T ss_dssp --GTTEEE------ECS---SC---------------CCCTTSC---------HHHHHHGGG-SSSCSHHHHTTHHHHHH
T ss_pred --hCcEEE------Eec---Cc---------------ccCCCCC---------HHHHHHHHH-HhcCCCHHHHHHHHHHH
Confidence 000100 000 00 0000111 111111000 00011112234578899
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+|+. ...++++++|||||||||+|||||+.+|++|||||||++||
T Consensus 118 l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (359)
T 2yyz_A 118 ARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165 (359)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 9999997 56789999999999999999999999999999999999999
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-36 Score=255.99 Aligned_cols=152 Identities=25% Similarity=0.360 Sum_probs=110.7
Q ss_pred eEEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhh
Q psy2689 59 DIKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134 (262)
Q Consensus 59 ~i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~ 134 (262)
.|+++|++++|++ ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++. . .
T Consensus 10 ~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~G--l~~p~~G~I~~~g~~~~--~---~------ 76 (214)
T 1sgw_A 10 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEIIYNGVPIT--K---V------ 76 (214)
T ss_dssp EEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEETTEEGG--G---G------
T ss_pred eEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCeEEEECCEEhh--h---h------
Confidence 5899999999974 8999999999999999999999999999998 67899999999998763 0 0
Q ss_pred hHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHH
Q psy2689 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRIL 214 (262)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (262)
...+ ..+.+ ... +++..+ ..+++.... .+... ... ..++.+++
T Consensus 77 -~~~i------~~v~q---~~~---------------~~~~~t---------v~enl~~~~-~~~~~-~~~-~~~~~~~l 119 (214)
T 1sgw_A 77 -KGKI------FFLPE---EII---------------VPRKIS---------VEDYLKAVA-SLYGV-KVN-KNEIMDAL 119 (214)
T ss_dssp -GGGE------EEECS---SCC---------------CCTTSB---------HHHHHHHHH-HHTTC-CCC-HHHHHHHH
T ss_pred -cCcE------EEEeC---CCc---------------CCCCCC---------HHHHHHHHH-HhcCC-chH-HHHHHHHH
Confidence 0000 00000 000 000000 112221111 11111 122 56788899
Q ss_pred HhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 215 ~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+|+.. . ++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 120 ~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 120 ESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp HHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred HHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 9999975 4 78899999999999999999999999999999999998
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1e-35 Score=268.25 Aligned_cols=154 Identities=29% Similarity=0.416 Sum_probs=113.0
Q ss_pred EEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 60 IKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 60 i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
|+++|++++|++ ++||+|++||+++|+||||||||||||+|+| +..|++|+|.++|+++......
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~~~g~~i~~~~~~--------- 70 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDGKDVTDLSPE--------- 70 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT--SSCCSEEEEEETTEECTTSCHH---------
T ss_pred EEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHc--CCCCCCcEEEECCEECCCCchh---------
Confidence 788999999975 8999999999999999999999999999998 7899999999999987432110
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
. .....+.| .. .+++.++ ..+++.... ....... . .++.++++
T Consensus 71 ~------r~ig~v~Q---~~---------------~l~~~lt---------v~enl~~~~-~~~~~~~--~-~~v~~~l~ 113 (348)
T 3d31_A 71 K------HDIAFVYQ---NY---------------SLFPHMN---------VKKNLEFGM-RMKKIKD--P-KRVLDTAR 113 (348)
T ss_dssp H------HTCEEECT---TC---------------CCCTTSC---------HHHHHHHHH-HHHCCCC--H-HHHHHHHH
T ss_pred h------CcEEEEec---Cc---------------ccCCCCC---------HHHHHHHHH-HHcCCCH--H-HHHHHHHH
Confidence 0 00111100 00 0011111 122222111 1111111 2 67889999
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+|+. ...++++++|||||||||+|||||+.+|++|||||||++||
T Consensus 114 ~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 114 DLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp HTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred HcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 99997 56789999999999999999999999999999999999999
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-36 Score=259.92 Aligned_cols=154 Identities=25% Similarity=0.370 Sum_probs=109.9
Q ss_pred EEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 60 IKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
|+++|++++|++ ++||+|++ +++||+||||||||||+|+|+| +..|++|+|.++|+++..... ..
T Consensus 2 l~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~---------~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADITPLPP---------ER 69 (240)
T ss_dssp CEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHT--SSCCSEEEEEETTEECTTSCT---------TT
T ss_pred EEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhC--CCCCCceEEEECCEECCcCch---------hh
Confidence 678999999975 89999999 9999999999999999999998 678999999999988742110 00
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
..+.+..+...+ ....+ ..+++... ...........++.++++.
T Consensus 70 ~~i~~v~q~~~l----~~~lt-----------------------------v~enl~~~---~~~~~~~~~~~~~~~~l~~ 113 (240)
T 2onk_A 70 RGIGFVPQDYAL----FPHLS-----------------------------VYRNIAYG---LRNVERVERDRRVREMAEK 113 (240)
T ss_dssp SCCBCCCSSCCC----CTTSC-----------------------------HHHHHHTT---CTTSCHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCcc----CCCCc-----------------------------HHHHHHHH---HHHcCCchHHHHHHHHHHH
Confidence 001000000000 00001 11111100 0000111224568899999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 114 ~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 114 LGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp TTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred cCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9997 46788999999999999999999999999999999999999
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=8.9e-36 Score=257.28 Aligned_cols=152 Identities=26% Similarity=0.363 Sum_probs=104.0
Q ss_pred eEEEeeeeEee--CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSP--CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~--~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|++++| ++ ++||+|++|+++||+||||||||||+++|+| +..|++|+|.++|+++...+...+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~I~i~g~~~~~~~~~~~--- 81 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR--FYIPENGQVLIDGHDLALADPNWL--- 81 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEETTTSCHHHH---
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEEhhhCCHHHH---
Confidence 58999999999 33 8999999999999999999999999999998 688999999999998754322111
Q ss_pred HhhhHHHHHHHHHhhHHHHhh--hcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVE--ASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
......+.+-. .......|+.+. .......+
T Consensus 82 ----------~~~i~~v~Q~~~l~~~tv~enl~~~-------------------------------------~~~~~~~~ 114 (247)
T 2ff7_A 82 ----------RRQVGVVLQDNVLLNRSIIDNISLA-------------------------------------NPGMSVEK 114 (247)
T ss_dssp ----------HHHEEEECSSCCCTTSBHHHHHTTT-------------------------------------CTTCCHHH
T ss_pred ----------HhcEEEEeCCCccccccHHHHHhcc-------------------------------------CCCCCHHH
Confidence 11111111100 000111111110 00011223
Q ss_pred HHHHHHhCCCCh----------hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTK----------EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~----------~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 115 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD 177 (247)
T 2ff7_A 115 VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177 (247)
T ss_dssp HHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCC
T ss_pred HHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 444444445432 12344578999999999999999999999999999999998
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.8e-36 Score=273.79 Aligned_cols=163 Identities=30% Similarity=0.448 Sum_probs=113.8
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|++++|++ ++||+|.+|++++|+||||||||||||+|+| +..|++|+|.++|+++........
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~~~--- 77 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPSTGELYFDDRLVASNGKLIV--- 77 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT--SSCCSEEEEEETTEEEEETTEESS---
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECcccccccC---
Confidence 4788999999864 6899999999999999999999999999998 789999999999998753100000
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
......+.+ +.| .. .+++.++ ..+++.... ............++.
T Consensus 78 -~~~~r~ig~------v~Q---~~---------------~l~~~lt---------v~eni~~~~-~~~~~~~~~~~~~v~ 122 (353)
T 1oxx_K 78 -PPEDRKIGM------VFQ---TW---------------ALYPNLT---------AFENIAFPL-TNMKMSKEEIRKRVE 122 (353)
T ss_dssp -CGGGSCEEE------EET---TS---------------CCCTTSC---------HHHHHHGGG-TTSSCCHHHHHHHHH
T ss_pred -ChhhCCEEE------EeC---CC---------------ccCCCCC---------HHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 000000000 000 00 0001111 111111100 011122334456789
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 123 ~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD 172 (353)
T 1oxx_K 123 EVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172 (353)
T ss_dssp HHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 999999997 56789999999999999999999999999999999999999
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-35 Score=258.23 Aligned_cols=158 Identities=25% Similarity=0.280 Sum_probs=110.2
Q ss_pred eEEEeeeeEeeC------C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHH
Q psy2689 59 DIKVENFSLSPC------L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128 (262)
Q Consensus 59 ~i~i~~v~~~~~------~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~ 128 (262)
+|+++|++++|+ . ++||+|.+|+++||+||||||||||+|+|+| +..|++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~----- 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEPTSGDVLYDGERKKGY----- 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEECCHH-----
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCcEEEECCEECchH-----
Confidence 478888888885 2 6899999999999999999999999999998 6789999999999876310
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
.+......+.+ .... .+...+ ..+++..... .. ........
T Consensus 75 -----------~~~~~i~~v~q---~~~~--------------~~~~~t---------v~enl~~~~~-~~-~~~~~~~~ 115 (266)
T 2yz2_A 75 -----------EIRRNIGIAFQ---YPED--------------QFFAER---------VFDEVAFAVK-NF-YPDRDPVP 115 (266)
T ss_dssp -----------HHGGGEEEECS---SGGG--------------GCCCSS---------HHHHHHHTTT-TT-CTTSCSHH
T ss_pred -----------HhhhhEEEEec---cchh--------------hcCCCc---------HHHHHHHHHH-hc-CCHHHHHH
Confidence 00000011100 0000 000000 1111111000 00 11223356
Q ss_pred HHHHHHHhCCCCh-hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTK-EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~-~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 116 ~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD 170 (266)
T 2yz2_A 116 LVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170 (266)
T ss_dssp HHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred HHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCC
Confidence 7889999999972 35788899999999999999999999999999999999999
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-35 Score=263.23 Aligned_cols=160 Identities=25% Similarity=0.319 Sum_probs=106.9
Q ss_pred eEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
.|+++||+++|++ ++||+|++|+++|||||||||||||+++|+| ++.|++|+|.++|+++...+...++.
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g--l~~p~~G~I~i~G~~i~~~~~~~~r~-- 128 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR--FYDISSGCIRIDGQDISQVTQASLRS-- 128 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT--SSCCSEEEEEETTEETTSBCHHHHHH--
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc--CCCCCCcEEEECCEEcccCCHHHHhc--
Confidence 5899999999953 8999999999999999999999999999998 78999999999999986554332211
Q ss_pred hhhHHHHHHHHHhhHHHHh--hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
....+.|- ....+...|+.+..... ....+ ...+ ....+
T Consensus 129 -----------~i~~v~Q~~~lf~~Tv~eNi~~~~~~~------------------~~~~~---~~~~-------~~~~l 169 (306)
T 3nh6_A 129 -----------HIGVVPQDTVLFNDTIADNIRYGRVTA------------------GNDEV---EAAA-------QAAGI 169 (306)
T ss_dssp -----------TEEEECSSCCCCSEEHHHHHHTTSTTC------------------CHHHH---HHHH-------HHHTC
T ss_pred -----------ceEEEecCCccCcccHHHHHHhhcccC------------------CHHHH---HHHH-------HHhCc
Confidence 11111110 00111223333221000 00000 0000 01112
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+++..+ |+.+ ...++..+|||||||||+|||||+.+|+||||||||++||
T Consensus 170 ~~~i~~lp~gl~t-~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD 222 (306)
T 3nh6_A 170 HDAIMAFPEGYRT-QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 222 (306)
T ss_dssp HHHHHHSTTGGGC-EESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCC
T ss_pred HHHHHhccchhhh-HhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 2333333 4443 2345678999999999999999999999999999999998
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.2e-35 Score=258.12 Aligned_cols=161 Identities=27% Similarity=0.380 Sum_probs=109.0
Q ss_pred eEEEeeeeEeeC----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPC----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++||+++|+ . ++||+|.+|++++|+||||||||||+++|+| +..|++|+|.++|+++...+...
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G--l~~p~~G~I~~~g~~i~~~~~~~--- 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN--LYQPTGGKVLLDGEPLVQYDHHY--- 90 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEEGGGBCHHH---
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCCEEEECCEEcccCCHHH---
Confidence 589999999995 2 7999999999999999999999999999998 67899999999999875332111
Q ss_pred HHhhhHHHHHHHHHhhHHHHh--hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
+......+.+- .......+|+.+.... .. ....+ . ......
T Consensus 91 ----------~~~~i~~v~Q~~~l~~~tv~enl~~~~~~----------------~~-~~~~~---~-------~~~~~~ 133 (271)
T 2ixe_A 91 ----------LHTQVAAVGQEPLLFGRSFRENIAYGLTR----------------TP-TMEEI---T-------AVAMES 133 (271)
T ss_dssp ----------HHHHEEEECSSCCCCSSBHHHHHHTTCSS----------------CC-CHHHH---H-------HHHHHH
T ss_pred ----------HhccEEEEecCCccccccHHHHHhhhccc----------------CC-hHHHH---H-------HHHHHH
Confidence 11111111110 0011111222211000 00 00000 0 001122
Q ss_pred HHHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++++.+ |+.. ..++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 134 ~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD 188 (271)
T 2ixe_A 134 GAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188 (271)
T ss_dssp TCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred hHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 355677777 6753 4567789999999999999999999999999999999999
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-35 Score=256.13 Aligned_cols=154 Identities=19% Similarity=0.303 Sum_probs=103.9
Q ss_pred EEEeeeeEee-CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 60 IKVENFSLSP-CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 60 i~i~~v~~~~-~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
|+++|++++| ++ ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|+++...+...+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~----- 74 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER--FYQPTAGEITIDGQPIDNISLENW----- 74 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT--SSCCSBSCEEETTEESTTTSCSCC-----
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCcEEEECCEEhhhCCHHHH-----
Confidence 7889999999 43 8999999999999999999999999999998 678999999999988743221100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
.+.+.+..+... +. ..+...|+.+. ........++.++
T Consensus 75 --~~~i~~v~q~~~---l~-~~tv~enl~~~------------------------------------~~~~~~~~~~~~~ 112 (243)
T 1mv5_A 75 --RSQIGFVSQDSA---IM-AGTIRENLTYG------------------------------------LEGDYTDEDLWQV 112 (243)
T ss_dssp --TTTCCEECCSSC---CC-CEEHHHHTTSC------------------------------------TTSCSCHHHHHHH
T ss_pred --HhhEEEEcCCCc---cc-cccHHHHHhhh------------------------------------ccCCCCHHHHHHH
Confidence 000100000000 00 00000111000 0001122345666
Q ss_pred HHhCCCChhh----------hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEM----------QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~----------~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++.+.. .++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 113 l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD 171 (243)
T 1mv5_A 113 LDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171 (243)
T ss_dssp HHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSC
T ss_pred HHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 7777765321 134567999999999999999999999999999999998
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.6e-34 Score=246.35 Aligned_cols=150 Identities=24% Similarity=0.259 Sum_probs=106.1
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
+|+++|++++|+ + ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.+. ..+....
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~I~~~-~~i~~v~-------- 72 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG--IHRPIQGKIEVY-QSIGFVP-------- 72 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTT--SSCCSEEEEEEC-SCEEEEC--------
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEEe-ccEEEEc--------
Confidence 589999999997 5 8999999999999999999999999999998 678999998731 1111100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+. ..+ ....+ ..|+.+.... ...+..........++.
T Consensus 73 ----q~-------~~~----~~~~tv~enl~~~~~~---------------------------~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 73 ----QF-------FSS----PFAYSVLDIVLMGRST---------------------------HINTFAKPKSHDYQVAM 110 (253)
T ss_dssp ----SC-------CCC----SSCCBHHHHHHGGGGG---------------------------GSCTTCCCCHHHHHHHH
T ss_pred ----CC-------Ccc----CCCCCHHHHHHHhhhh---------------------------hcccccCCCHHHHHHHH
Confidence 00 000 00111 1121111000 00000001122345688
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 111 ~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 111 QALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred HHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 899999997 46788899999999999999999999999999999999999
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.9e-35 Score=251.55 Aligned_cols=153 Identities=28% Similarity=0.355 Sum_probs=109.2
Q ss_pred eEEEeeeeEeeCC--CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 59 DIKVENFSLSPCL--KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 59 ~i~i~~v~~~~~~--~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
+|+++|++++ .- ++||+|.+|++++|+||||||||||+|+|+| +..|+ |+|.++|+++...+...
T Consensus 4 ~l~~~~l~~~-~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~G--l~~p~-G~i~~~g~~~~~~~~~~--------- 70 (249)
T 2qi9_C 4 VMQLQDVAES-TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSGK-GSIQFAGQPLEAWSATK--------- 70 (249)
T ss_dssp EEEEEEEEET-TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT--SSCCE-EEEEETTEEGGGSCHHH---------
T ss_pred EEEEEceEEE-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCC-eEEEECCEECCcCCHHH---------
Confidence 5889999987 32 8999999999999999999999999999998 67888 99999998875332111
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
+......+.+ ... +++..+ ..+++. +....... ..++.++++.
T Consensus 71 ----~~~~i~~v~q---~~~---------------~~~~~t---------v~e~l~-----~~~~~~~~-~~~~~~~l~~ 113 (249)
T 2qi9_C 71 ----LALHRAYLSQ---QQT---------------PPFATP---------VWHYLT-----LHQHDKTR-TELLNDVAGA 113 (249)
T ss_dssp ----HHHHEEEECS---CCC---------------CCTTCB---------HHHHHH-----TTCSSTTC-HHHHHHHHHH
T ss_pred ----HhceEEEECC---CCc---------------cCCCCc---------HHHHHH-----HhhccCCc-HHHHHHHHHH
Confidence 1111111110 000 000000 111111 00000001 4568889999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCC-------EeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT-------LLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~-------lLlLDEPT~~LD 262 (262)
+|+. ...++++.+|||||||||+|||||+.+|+ +|||||||++||
T Consensus 114 ~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD 165 (249)
T 2qi9_C 114 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165 (249)
T ss_dssp TTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCC
T ss_pred cCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCC
Confidence 9997 46788899999999999999999999999 999999999999
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-34 Score=251.91 Aligned_cols=149 Identities=27% Similarity=0.350 Sum_probs=106.6
Q ss_pred EEEeeeeEeeC-----C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 60 IKVENFSLSPC-----L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 60 i~i~~v~~~~~-----~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
|+++|++++|+ . ++||+|. |++++|+||||||||||+++|+| +. |++|+|.++|+++... ..
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G--l~-p~~G~I~~~g~~~~~~-~~---- 72 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG--LL-PYSGNIFINGMEVRKI-RN---- 72 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTT--SS-CCEEEEEETTEEGGGC-SC----
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhC--CC-CCCcEEEECCEECcch-HH----
Confidence 67788888874 2 6899999 99999999999999999999998 66 9999999999876421 00
Q ss_pred HHhhhHHHHH-HHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 131 VLSADKNRVK-LLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 131 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.+.+. +..|... . ..+ ..+++... ..+. .....+
T Consensus 73 -----~~~i~~~v~Q~~~-----l-~~t-----------------------------v~enl~~~-~~~~----~~~~~~ 107 (263)
T 2pjz_A 73 -----YIRYSTNLPEAYE-----I-GVT-----------------------------VNDIVYLY-EELK----GLDRDL 107 (263)
T ss_dssp -----CTTEEECCGGGSC-----T-TSB-----------------------------HHHHHHHH-HHHT----CCCHHH
T ss_pred -----hhheEEEeCCCCc-----c-CCc-----------------------------HHHHHHHh-hhhc----chHHHH
Confidence 00010 0000000 0 000 11122111 1111 123456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 160 (263)
T 2pjz_A 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160 (263)
T ss_dssp HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCC
T ss_pred HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccC
Confidence 88899999997235788899999999999999999999999999999999998
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.8e-34 Score=248.83 Aligned_cols=153 Identities=21% Similarity=0.308 Sum_probs=102.2
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
+|+++|++++|++ ++||+|++|+++||+||||||||||+++|+| +..| +|+|.++|+++...+...
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~~-~G~I~i~g~~i~~~~~~~--- 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR--FYDA-EGDIKIGGKNVNKYNRNS--- 90 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT--SSCC-EEEEEETTEEGGGBCHHH---
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc--cCCC-CeEEEECCEEhhhcCHHH---
Confidence 4899999999952 6899999999999999999999999999998 4455 899999998874322110
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
+......+.+ ... +... ...+++. +... .....++
T Consensus 91 ----------~~~~i~~v~Q---~~~----------------------l~~~---tv~enl~-----~~~~--~~~~~~~ 125 (260)
T 2ghi_A 91 ----------IRSIIGIVPQ---DTI----------------------LFNE---TIKYNIL-----YGKL--DATDEEV 125 (260)
T ss_dssp ----------HHTTEEEECS---SCC----------------------CCSE---EHHHHHH-----TTCT--TCCHHHH
T ss_pred ----------HhccEEEEcC---CCc----------------------cccc---CHHHHHh-----ccCC--CCCHHHH
Confidence 0000111110 000 0000 0111111 0000 0112345
Q ss_pred HHHHHhCCCChhh----------hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGLGFTKEM----------QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~lgl~~~~----------~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+++.... .++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 187 (260)
T 2ghi_A 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187 (260)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC
T ss_pred HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 5566666653211 235678999999999999999999999999999999998
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.4e-35 Score=265.46 Aligned_cols=151 Identities=22% Similarity=0.311 Sum_probs=110.3
Q ss_pred eEEEeeeeEee--CC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSP--CL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~--~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++| ++ ++||+|.+||+++|+|||||||||||++|+| +.. ++|+|.++|+++...+...++
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG--l~~-~~G~I~i~G~~i~~~~~~~~r-- 93 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR--LLN-TEGEIQIDGVSWDSITLEQWR-- 93 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT--CSE-EEEEEEESSCBTTSSCHHHHH--
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC--CCC-CCeEEEECCEECCcCChHHHh--
Confidence 48999999999 43 8999999999999999999999999999998 445 889999999998654322111
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.....+. +... +... ...+++ . ........++.
T Consensus 94 -----------r~ig~v~---Q~~~----------------------lf~~---tv~enl-------~-~~~~~~~~~v~ 126 (390)
T 3gd7_A 94 -----------KAFGVIP---QKVF----------------------IFSG---TFRKNL-------D-PNAAHSDQEIW 126 (390)
T ss_dssp -----------HTEEEES---CCCC----------------------CCSE---EHHHHH-------C-TTCCSCHHHHH
T ss_pred -----------CCEEEEc---CCcc----------------------cCcc---CHHHHh-------h-hccccCHHHHH
Confidence 1111111 0000 0000 011111 1 01112345678
Q ss_pred HHHHhCCCChhhhcCCCCC-----------CCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKE-----------FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~-----------LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+++. ...++++.+ |||||||||+|||||+.+|+||||||||++||
T Consensus 127 ~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD 187 (390)
T 3gd7_A 127 KVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187 (390)
T ss_dssp HHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSC
T ss_pred HHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 899999996 567788887 99999999999999999999999999999998
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-32 Score=233.29 Aligned_cols=149 Identities=24% Similarity=0.316 Sum_probs=95.8
Q ss_pred eEEEeeeeEeeC--C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPC--L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~--~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|++++|+ + ++||+|++|+++||+||||||||||+++|+| +..|++|+|.++|. +....
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~-i~~v~------- 75 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSGR-ISFCS------- 75 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT--SSCCSEEEEEECSC-EEEEC-------
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCcCCccEEEECCE-EEEEe-------
Confidence 589999999994 2 7999999999999999999999999999998 67899999999873 21110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+.. . + ......+|+.+.... ........ +.. ..+.
T Consensus 76 -----q~~-------~---~-~~~tv~enl~~~~~~-------------------~~~~~~~~---~~~-------~~l~ 110 (229)
T 2pze_A 76 -----QFS-------W---I-MPGTIKENIIFGVSY-------------------DEYRYRSV---IKA-------CQLE 110 (229)
T ss_dssp -----SSC-------C---C-CSBCHHHHHHTTSCC-------------------CHHHHHHH---HHH-------TTCH
T ss_pred -----cCC-------c---c-cCCCHHHHhhccCCc-------------------ChHHHHHH---HHH-------hCcH
Confidence 000 0 0 001111222211000 00000000 000 0112
Q ss_pred HHHHhCCCC-hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFT-KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~-~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++.+... ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD 162 (229)
T 2pze_A 111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162 (229)
T ss_dssp HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence 223333211 011234578999999999999999999999999999999998
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.98 E-value=1.2e-32 Score=236.26 Aligned_cols=142 Identities=24% Similarity=0.306 Sum_probs=95.6
Q ss_pred eEEEeeeeEeeC--C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPC--L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~--~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+|+++|++++|+ + ++||+|.+|+++||+||||||||||+++|+| +..|++|+|.++|. +....
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G--l~~p~~G~I~~~g~-i~~v~------- 72 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA--EMDKVEGHVAIKGS-VAYVP------- 72 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT--CSEEEEEEEEECSC-EEEEC-------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCE-EEEEc-------
Confidence 388999999996 2 7999999999999999999999999999998 67899999999873 21110
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCch-hhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
|.. . ....+ ..|+.+.. .... ....++
T Consensus 73 -----Q~~-------~-----~~~~tv~enl~~~~----------------------------------~~~~-~~~~~~ 100 (237)
T 2cbz_A 73 -----QQA-------W-----IQNDSLRENILFGC----------------------------------QLEE-PYYRSV 100 (237)
T ss_dssp -----SSC-------C-----CCSEEHHHHHHTTS----------------------------------CCCT-THHHHH
T ss_pred -----CCC-------c-----CCCcCHHHHhhCcc----------------------------------ccCH-HHHHHH
Confidence 000 0 00111 11221110 0000 000111
Q ss_pred HH---HHHhCCCCh----hhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RR---ILAGLGFTK----EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~---~l~~lgl~~----~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+ +++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp HHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 11 111222211 12357789999999999999999999999999999999998
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=1.9e-32 Score=262.79 Aligned_cols=154 Identities=24% Similarity=0.322 Sum_probs=105.6
Q ss_pred eEEEeeeeEeeC---C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPC---L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~---~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|+ . |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|+++...+...++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g--~~~p~~G~i~~~g~~~~~~~~~~~~~- 417 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR--FYDVDSGSICLDGHDVRDYKLTNLRR- 417 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCCEEEECCEEhhhCCHHHHhc-
Confidence 599999999996 2 8999999999999999999999999999998 78999999999999875433222111
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
.+.+..|...+ . ..+..+|+.+.. . ....++++.
T Consensus 418 ------~i~~v~Q~~~l---~-~~tv~eni~~~~-----------------------------------~-~~~~~~~~~ 451 (582)
T 3b5x_A 418 ------HFALVSQNVHL---F-NDTIANNIAYAA-----------------------------------E-GEYTREQIE 451 (582)
T ss_pred ------CeEEEcCCCcc---c-cccHHHHHhccC-----------------------------------C-CCCCHHHHH
Confidence 11111111110 0 111112222110 0 001122344
Q ss_pred HHHHhCC-----------CChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLG-----------FTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lg-----------l~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.++ +++. ..+...+||||||||++|||||+.+|++|||||||++||
T Consensus 452 ~~~~~~~l~~~~~~~p~g~~t~-~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD 512 (582)
T 3b5x_A 452 QAARQAHAMEFIENMPQGLDTV-IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512 (582)
T ss_pred HHHHHCCCHHHHHhCcccccch-hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 4444444 4332 234467899999999999999999999999999999999
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=2.5e-32 Score=261.83 Aligned_cols=152 Identities=25% Similarity=0.334 Sum_probs=105.2
Q ss_pred eeEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 58 VDIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
..|+++|++++|++ |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++.
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g--~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR--FYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT--SSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhc--CCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 35899999999953 8999999999999999999999999999998 78999999999999986554332211
Q ss_pred HHhhhHHHHHHHHHhhHHHHh--hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEP 208 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (262)
....+.|- ..+.+..+|+.+... ...+.
T Consensus 416 -------------~i~~v~Q~~~l~~~tv~eni~~~~~-------------------------------------~~~~~ 445 (578)
T 4a82_A 416 -------------QIGLVQQDNILFSDTVKENILLGRP-------------------------------------TATDE 445 (578)
T ss_dssp -------------TEEEECSSCCCCSSBHHHHHGGGCS-------------------------------------SCCHH
T ss_pred -------------heEEEeCCCccCcccHHHHHhcCCC-------------------------------------CCCHH
Confidence 11111110 001122233332110 00111
Q ss_pred HHHHHHHhC-----------CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGL-----------GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~l-----------gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+.++.. |+++. ..++..+|||||||||+|||||+.+|++|||||||++||
T Consensus 446 ~~~~~~~~~~~~~~~~~lp~g~~t~-~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD 509 (578)
T 4a82_A 446 EVVEAAKMANAHDFIMNLPQGYDTE-VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509 (578)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCB-CCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred HHHHHHHHhCcHHHHHhCcchhhhh-hccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 222233333 33322 233456899999999999999999999999999999999
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=3.1e-32 Score=261.31 Aligned_cols=153 Identities=22% Similarity=0.307 Sum_probs=106.5
Q ss_pred eEEEeeeeEeeC---C----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPC---L----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~---~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|+ . |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|+++...+...++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~p~~G~i~~~g~~~~~~~~~~~~-- 416 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FYDIDEGHILMDGHDLREYTLASLR-- 416 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT--TTCCSEEEEEETTEETTTBCHHHHH--
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhh--ccCCCCCeEEECCEEccccCHHHHH--
Confidence 599999999996 2 7999999999999999999999999999998 7899999999999988644322111
Q ss_pred HhhhHHHHHHHHHhhHHHHh--hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.....+.|- ....+..+|+.+.. . ....+++
T Consensus 417 -----------~~i~~v~Q~~~l~~~tv~eni~~~~-----------------------------------~-~~~~~~~ 449 (582)
T 3b60_A 417 -----------NQVALVSQNVHLFNDTVANNIAYAR-----------------------------------T-EEYSREQ 449 (582)
T ss_dssp -----------HTEEEECSSCCCCSSBHHHHHHTTT-----------------------------------T-SCCCHHH
T ss_pred -----------hhCeEEccCCcCCCCCHHHHHhccC-----------------------------------C-CCCCHHH
Confidence 111111110 00111112222110 0 0112234
Q ss_pred HHHHHHhCCCChh----------hhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKE----------MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~----------~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.+. ...++..+||||||||++|||||+++|++|||||||++||
T Consensus 450 ~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD 512 (582)
T 3b60_A 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_dssp HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCC
T ss_pred HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 5555555555321 1233467899999999999999999999999999999999
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2e-32 Score=263.46 Aligned_cols=155 Identities=20% Similarity=0.272 Sum_probs=105.5
Q ss_pred eeEEEeeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 58 VDIKVENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 58 ~~i~i~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
..|+++|++++|++ |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|+++...+...++..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g--~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR--FYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTT--SSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 35999999999963 8999999999999999999999999999998 789999999999999876544322211
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....| ... + .+.+..+|+.+.. ....+.++.
T Consensus 431 i~~v~Q-------~~~---l-f~~tv~eni~~~~-------------------------------------~~~~~~~~~ 462 (598)
T 3qf4_B 431 IGIVLQ-------DTI---L-FSTTVKENLKYGN-------------------------------------PGATDEEIK 462 (598)
T ss_dssp EEEECT-------TCC---C-CSSBHHHHHHSSS-------------------------------------TTCCTTHHH
T ss_pred eEEEeC-------CCc---c-ccccHHHHHhcCC-------------------------------------CCCCHHHHH
Confidence 111111 000 0 0111122322210 000112233
Q ss_pred HHHHhCCCChhh----------hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEM----------QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~----------~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++.+++.+.. ......+||||||||++|||||+.+|++|||||||++||
T Consensus 463 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD 523 (598)
T 3qf4_B 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523 (598)
T ss_dssp HHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCC
T ss_pred HHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 344444432111 112236899999999999999999999999999999999
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=3.5e-32 Score=261.56 Aligned_cols=154 Identities=26% Similarity=0.324 Sum_probs=106.3
Q ss_pred EEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 60 IKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 60 i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
|+++|++++|++ |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|+++...+...++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~p~~G~i~~~g~~i~~~~~~~~~-- 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR--LYDPASGTISLDGHDIRQLNPVWLR-- 417 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT--SSCCSEEEEEETTEETTTBCHHHHH--
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCcEEEECCEEhhhCCHHHHH--
Confidence 899999999952 7999999999999999999999999999998 7899999999999988644322111
Q ss_pred HhhhHHHHHHHHHhhHHHHh--hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
.....+.|- ..+.+..+|+.+.. .......+++
T Consensus 418 -----------~~i~~v~Q~~~l~~~tv~eni~~~~----------------------------------~~~~~~~~~~ 452 (595)
T 2yl4_A 418 -----------SKIGTVSQEPILFSCSIAENIAYGA----------------------------------DDPSSVTAEE 452 (595)
T ss_dssp -----------HSEEEECSSCCCCSSBHHHHHHTTS----------------------------------SSTTTSCHHH
T ss_pred -----------hceEEEccCCcccCCCHHHHHhhcC----------------------------------CCccccCHHH
Confidence 111111100 00111112222210 0000112344
Q ss_pred HHHHHHhCCCChhh----------hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEM----------QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~----------~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++++.+++.+.. ..++..+|||||||||+|||||+.+|++|||||||++||
T Consensus 453 ~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 453 IQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp HHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCC
T ss_pred HHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCC
Confidence 56666666653211 122348899999999999999999999999999999999
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=5.4e-32 Score=259.86 Aligned_cols=162 Identities=23% Similarity=0.331 Sum_probs=108.2
Q ss_pred eEEEeeeeEeeCC-------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 59 DIKVENFSLSPCL-------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 59 ~i~i~~v~~~~~~-------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
.|+++|++++|++ |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|+++...+...++..
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR--LIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT--SSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CccCCCcEEEECCEEcccCCHHHHHhh
Confidence 5999999999942 8999999999999999999999999999998 789999999999999876544322211
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
+....| ... + ...+..+|+.+..... ..+.+ ...+ ....+.
T Consensus 419 i~~v~Q-------~~~---l-f~~tv~eni~~~~~~~------------------~~~~~---~~~~-------~~~~~~ 459 (587)
T 3qf4_A 419 ISAVPQ-------ETV---L-FSGTIKENLKWGREDA------------------TDDEI---VEAA-------KIAQIH 459 (587)
T ss_dssp EEEECS-------SCC---C-CSEEHHHHHTTTCSSC------------------CHHHH---HHHH-------HHTTCH
T ss_pred eEEECC-------CCc---C-cCccHHHHHhccCCCC------------------CHHHH---HHHH-------HHhCcH
Confidence 111111 000 0 0111223332211000 00000 0000 011123
Q ss_pred HHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++.+ |+++ ..+++..+||||||||++|||||+.+|++|||||||++||
T Consensus 460 ~~i~~l~~g~~~-~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD 511 (587)
T 3qf4_A 460 DFIISLPEGYDS-RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511 (587)
T ss_dssp HHHHTSSSGGGC-EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSC
T ss_pred HHHHhcccchhh-HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 344444 5543 3456678999999999999999999999999999999999
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=8.1e-31 Score=231.08 Aligned_cols=148 Identities=26% Similarity=0.362 Sum_probs=83.1
Q ss_pred eEEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhh
Q psy2689 59 DIKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135 (262)
Q Consensus 59 ~i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~ 135 (262)
.|+++|+++.+.. ++||+|++|+++||+||||||||||+++|+| +..|++|+|.++|. +....
T Consensus 40 ~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G--l~~p~~G~I~~~g~-i~~v~----------- 105 (290)
T 2bbs_A 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSGR-ISFCS----------- 105 (290)
T ss_dssp ----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTT--SSCEEEEEEECCSC-EEEEC-----------
T ss_pred eEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCcEEEECCE-EEEEe-----------
Confidence 4788888886533 8999999999999999999999999999998 67899999998773 21100
Q ss_pred HHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
+... + .......|+. .... ........ +... .+.+.++
T Consensus 106 -Q~~~----------l-~~~tv~enl~-~~~~-------------------~~~~~~~~---~~~~-------~l~~~l~ 143 (290)
T 2bbs_A 106 -QNSW----------I-MPGTIKENII-GVSY-------------------DEYRYRSV---IKAC-------QLEEDIS 143 (290)
T ss_dssp -SSCC----------C-CSSBHHHHHH-TTCC-------------------CHHHHHHH---HHHT-------TCHHHHH
T ss_pred -CCCc----------c-CcccHHHHhh-Cccc-------------------chHHHHHH---HHHh-------ChHHHHH
Confidence 0000 0 0001111111 0000 00000000 0000 0112233
Q ss_pred hCCCC-hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 216 GLGFT-KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 216 ~lgl~-~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+... ....++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD 191 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCC
Confidence 33211 011234468999999999999999999999999999999998
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.2e-30 Score=247.59 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=107.3
Q ss_pred eeEEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 58 VDIKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 58 ~~i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
..++++++++.|++ .+||+|.+||++||+||||||||||+++|+| +..|++|+|.+++..+.......
T Consensus 268 ~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~~~~i~~~~q~~------ 339 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG--EITADEGSVTPEKQILSYKPQRI------ 339 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTT--SSCCSBCCEESSCCCEEEECSSC------
T ss_pred ceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCeeeEeechhc------
Confidence 46889999999986 4577899999999999999999999999998 78899999998776654221100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 213 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (262)
. .....++ .+++.. ............+.++
T Consensus 340 -~----------------~~~~~tv-----------------------------~~~l~~----~~~~~~~~~~~~~~~~ 369 (538)
T 3ozx_A 340 -F----------------PNYDGTV-----------------------------QQYLEN----ASKDALSTSSWFFEEV 369 (538)
T ss_dssp -C----------------CCCSSBH-----------------------------HHHHHH----HCSSTTCTTSHHHHHT
T ss_pred -c----------------cccCCCH-----------------------------HHHHHH----hhhhccchhHHHHHHH
Confidence 0 0000000 000100 0000000112346788
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.+++. ...++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 370 l~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 370 TKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp TTTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 8999997 56789999999999999999999999999999999999999
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=8.9e-31 Score=270.70 Aligned_cols=164 Identities=23% Similarity=0.370 Sum_probs=113.7
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++||+++|.. |+||+|++||++|||||||||||||+++|.| ++.|++|+|.++|.++...+...++.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER--FYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT--SSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc--CccCCCCEEEECCEEhhhCCHHHHHh
Confidence 5999999999952 8999999999999999999999999999998 89999999999999998776654433
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+....|. ..+ ...+..+|+.+..+... . ..+ ++++.++ ...+
T Consensus 1154 ~i~~V~Qd-------p~L----F~gTIreNI~~gld~~~-------------~---sd~---ei~~Al~-------~a~l 1196 (1321)
T 4f4c_A 1154 QIAIVSQE-------PTL----FDCSIAENIIYGLDPSS-------------V---TMA---QVEEAAR-------LANI 1196 (1321)
T ss_dssp TEEEECSS-------CCC----CSEEHHHHHSSSSCTTT-------------S---CHH---HHHHHHH-------HTTC
T ss_pred heEEECCC-------CEe----eCccHHHHHhccCCCCC-------------C---CHH---HHHHHHH-------HhCC
Confidence 22222111 110 12233345443211100 0 000 1111111 1123
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.+..+ |+++...++ ...||||||||++|||||+++|+|||||||||+||
T Consensus 1197 ~~~I~~Lp~GldT~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp HHHHHTSTTTTCSEETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred hHHHHcCcCCCCCEecCC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence 3444444 666555544 46799999999999999999999999999999999
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=6.1e-30 Score=264.45 Aligned_cols=162 Identities=24% Similarity=0.337 Sum_probs=115.5
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++||+|+|++ |+||+|++|+.+|||||+|||||||+++|.| ++.|.+|+|.++|.++...+...++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~--~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR--YYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT--SSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc--ccccccCcccCCCccchhccHHHHhh
Confidence 5999999999953 8999999999999999999999999999998 79999999999999998776655443
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+....|. ..+ ...+..+|+.+..... ..+. +.+.++ ...+
T Consensus 493 ~i~~v~Q~-------~~L----f~~TI~eNI~~g~~~~------------------~~~~---v~~a~~-------~a~l 533 (1321)
T 4f4c_A 493 NVAVVSQE-------PAL----FNCTIEENISLGKEGI------------------TREE---MVAACK-------MANA 533 (1321)
T ss_dssp HEEEECSS-------CCC----CSEEHHHHHHTTCTTC------------------CHHH---HHHHHH-------HTTC
T ss_pred cccccCCc-------cee----eCCchhHHHhhhcccc------------------hHHH---HHHHHH-------Hccc
Confidence 33322221 111 1233345655532110 0001 111111 1123
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.++.+ |+++...++ ...||||||||++||||++.+|+|||||||||+||
T Consensus 534 ~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD 586 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 586 (1321)
T ss_dssp HHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred hhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCC
Confidence 3444444 666666555 45799999999999999999999999999999999
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3.6e-29 Score=237.80 Aligned_cols=144 Identities=25% Similarity=0.379 Sum_probs=103.5
Q ss_pred ceeEEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHH
Q psy2689 57 SVDIKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132 (262)
Q Consensus 57 ~~~i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~ 132 (262)
...++++|+++.|++ .++|+|.+||++||+||||||||||+++|+| +..|++|+|.+ ...+....
T Consensus 285 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~G--l~~p~~G~i~~-~~~i~~v~-------- 353 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKIEW-DLTVAYKP-------- 353 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHT--SSCCSBCCCCC-CCCEEEEC--------
T ss_pred CeEEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEE-CceEEEEe--------
Confidence 346899999999976 5677789999999999999999999999998 67889998765 11111100
Q ss_pred hhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHH-HHHHhcCChhcHHHHHH
Q psy2689 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV-YDELKSIEADAAEPRAR 211 (262)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ 211 (262)
|. ... ....++ .+.+... .... .....+.
T Consensus 354 ----Q~-------~~~----~~~~tv-----------------------------~~~~~~~~~~~~------~~~~~~~ 383 (538)
T 1yqt_A 354 ----QY-------IKA----DYEGTV-----------------------------YELLSKIDASKL------NSNFYKT 383 (538)
T ss_dssp ----SS-------CCC----CCSSBH-----------------------------HHHHHHHHHHHH------TCHHHHH
T ss_pred ----cC-------CcC----CCCCcH-----------------------------HHHHHhhhccCC------CHHHHHH
Confidence 00 000 000110 0001000 0000 1134577
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 384 ~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD 433 (538)
T 1yqt_A 384 ELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433 (538)
T ss_dssp HTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred HHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 889999996 56789999999999999999999999999999999999999
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=2.7e-29 Score=241.32 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=103.2
Q ss_pred eeEEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHh
Q psy2689 58 VDIKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133 (262)
Q Consensus 58 ~~i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~ 133 (262)
..++++|+++.|++ .++|+|.+||++||+||||||||||+++|+| +..|++|+|.+. ..+....
T Consensus 356 ~~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~G--l~~p~~G~I~~~-~~i~~v~--------- 423 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD-LTVAYKP--------- 423 (607)
T ss_dssp EEEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHT--SSCCSBSCCCCC-CCEEEEC---------
T ss_pred eEEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEEe-eEEEEEe---------
Confidence 56899999999976 5677789999999999999999999999998 678999988651 1111100
Q ss_pred hhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHH-HHHHhcCChhcHHHHHHH
Q psy2689 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV-YDELKSIEADAAEPRARR 212 (262)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 212 (262)
|. ... ....++. +.+... .... .....+.+
T Consensus 424 ---Q~-------~~~----~~~~tv~-----------------------------e~~~~~~~~~~------~~~~~~~~ 454 (607)
T 3bk7_A 424 ---QY-------IKA----EYEGTVY-----------------------------ELLSKIDSSKL------NSNFYKTE 454 (607)
T ss_dssp ---SS-------CCC----CCSSBHH-----------------------------HHHHHHHHHHH------HCHHHHHH
T ss_pred ---cC-------ccC----CCCCcHH-----------------------------HHHHhhhccCC------CHHHHHHH
Confidence 00 000 0001110 001000 0000 11345778
Q ss_pred HHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 213 ~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 455 ~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 455 LLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp THHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 89999997 56789999999999999999999999999999999999999
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=1.9e-29 Score=260.14 Aligned_cols=162 Identities=25% Similarity=0.327 Sum_probs=109.4
Q ss_pred eEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHH
Q psy2689 59 DIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130 (262)
Q Consensus 59 ~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~ 130 (262)
.|+++|++++|++ |+||+|++||++|||||||||||||+++|+| ++.|++|+|.++|.++...+...++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g--~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR--LYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT--SSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 5899999999952 8999999999999999999999999999998 78999999999999987665443322
Q ss_pred HHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHH
Q psy2689 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRA 210 (262)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (262)
.+....| ... + ...+..+|+.+..... ..+ ++...+. ...+
T Consensus 465 ~i~~v~Q-------~~~---l-~~~ti~eNi~~g~~~~------------------~~~---~~~~~~~-------~~~~ 505 (1284)
T 3g5u_A 465 IIGVVSQ-------EPV---L-FATTIAENIRYGREDV------------------TMD---EIEKAVK-------EANA 505 (1284)
T ss_dssp HEEEECS-------SCC---C-CSSCHHHHHHHHCSSC------------------CHH---HHHHHHH-------HTTC
T ss_pred heEEEcC-------CCc---c-CCccHHHHHhcCCCCC------------------CHH---HHHHHHH-------HhCc
Confidence 2211111 100 0 1122234444321100 000 0111110 1112
Q ss_pred HHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 211 RRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 211 ~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+.+..+ |+++. ......+|||||||||+|||||+.+|+|||||||||+||
T Consensus 506 ~~~i~~l~~g~~t~-~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 506 YDFIMKLPHQFDTL-VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp HHHHHHSTTGGGCC-CSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred HHHHHhcccccccc-ccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 3344444 44332 234467899999999999999999999999999999999
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=7.3e-29 Score=235.69 Aligned_cols=54 Identities=30% Similarity=0.519 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++.++|+.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||
T Consensus 137 ~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD 190 (538)
T 1yqt_A 137 GKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190 (538)
T ss_dssp SCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 3577899999997 46789999999999999999999999999999999999998
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=4.5e-29 Score=239.80 Aligned_cols=160 Identities=23% Similarity=0.354 Sum_probs=97.0
Q ss_pred eeeeEeeCC------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhH
Q psy2689 63 ENFSLSPCL------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 63 ~~v~~~~~~------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
+|++++|++ ++| +|.+||++||+||||||||||+|+|+| +..|++|++......+ .........
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~G--ll~p~~G~~~~~~~~~-------~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAG--QLIPNLCEDNDSWDNV-------IRAFRGNEL 164 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTT--SSCCCTTTTCCCHHHH-------HHHTTTSTH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhC--CCCCCCCccccccchh-------hheeCCEeh
Confidence 899999975 567 899999999999999999999999998 6788888731100000 000000000
Q ss_pred HHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHh
Q psy2689 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (262)
+ .+..... . .... +.+.... ....+.. + . ....+++ .. .....++.++|+.
T Consensus 165 ~--~~~~~~~--~----~~~~---i~~~~q~--~~~~~~~--~-~---~tv~e~l-------~~---~~~~~~~~~~L~~ 215 (607)
T 3bk7_A 165 Q--NYFERLK--N----GEIR---PVVKPQY--VDLLPKA--V-K---GKVRELL-------KK---VDEVGKFEEVVKE 215 (607)
T ss_dssp H--HHHHHHH--H----TSCC---CEEECSC--GGGGGGT--C-C---SBHHHHH-------HH---TCCSSCHHHHHHH
T ss_pred h--hhhhhhh--h----hhcc---eEEeech--hhhchhh--c-c---ccHHHHh-------hh---hHHHHHHHHHHHH
Confidence 0 0000000 0 0000 0000000 0000000 0 0 0011111 10 0112357789999
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...++++.+|||||||||+|||||+.+|++||||||||+||
T Consensus 216 lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD 260 (607)
T 3bk7_A 216 LELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260 (607)
T ss_dssp TTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred cCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 9997 56789999999999999999999999999999999999999
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=3e-29 Score=258.68 Aligned_cols=165 Identities=21% Similarity=0.335 Sum_probs=107.2
Q ss_pred eeEEEeeeeEeeCC--------CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHH
Q psy2689 58 VDIKVENFSLSPCL--------KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 58 ~~i~i~~v~~~~~~--------~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
-.|+++||+++|++ |+||+|++||++||+||||||||||+++|+| ++.|++|+|.++|.++...+...++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g--~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER--FYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT--SSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc--CcCCCCCEEEECCEEcccCCHHHHH
Confidence 35899999999952 8999999999999999999999999999998 7899999999999998755433221
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
..+ .+..|...+ ...+..+|+.+..... .. ..+. +... .....
T Consensus 1107 ~~i-------~~v~Q~~~l----~~~ti~eNi~~~~~~~-------------~~---~~~~---i~~~-------~~~~~ 1149 (1284)
T 3g5u_A 1107 AQL-------GIVSQEPIL----FDCSIAENIAYGDNSR-------------VV---SYEE---IVRA-------AKEAN 1149 (1284)
T ss_dssp TSC-------EEEESSCCC----CSSBHHHHHTCCCSSC-------------CC---CHHH---HHHH-------HHHHT
T ss_pred hce-------EEECCCCcc----ccccHHHHHhccCCCC-------------CC---CHHH---HHHH-------HHHhC
Confidence 111 111110000 0112223332211000 00 0000 0000 01112
Q ss_pred HHHHHHhC--CCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~l--gl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.+.++.+ |+++... ....+|||||||||+|||||+.+|+||||||||++||
T Consensus 1150 ~~~~i~~l~~gldt~vg-e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD 1203 (1284)
T 3g5u_A 1150 IHQFIDSLPDKYNTRVG-DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203 (1284)
T ss_dssp CHHHHSSTTTGGGCBCS-TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCC
T ss_pred cHHHHHhCccccccccC-CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 33444443 4443332 3467899999999999999999999999999999999
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=4.4e-28 Score=241.44 Aligned_cols=57 Identities=32% Similarity=0.545 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCChhh-hcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEM-QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~-~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
...++.++|+.+|+.... .++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 876 ~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD 933 (986)
T 2iw3_A 876 TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933 (986)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCC
T ss_pred HHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCC
Confidence 356788999999997544 578899999999999999999999999999999999999
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=2.7e-27 Score=235.83 Aligned_cols=139 Identities=38% Similarity=0.601 Sum_probs=98.2
Q ss_pred eeEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcc---cCCceeEEEeccccccCchhHHH
Q psy2689 58 VDIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEASDDSAVN 129 (262)
Q Consensus 58 ~~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~---~p~~g~i~~~~~~i~~~~~~~~~ 129 (262)
..+...|++++|++ ++||+|.+|+++||+||||||||||+|+|+|..+. .+....+.|..++....
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~------ 507 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGT------ 507 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCC------
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccccccc------
Confidence 35777799999986 89999999999999999999999999999963210 01111122222211000
Q ss_pred HHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHH
Q psy2689 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209 (262)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (262)
....+ ..+++.. . ... . ..+
T Consensus 508 -----------------------~~~lt-----------------------------v~e~l~~-----~-~~~-~-~~~ 527 (986)
T 2iw3_A 508 -----------------------HSDTS-----------------------------VLDFVFE-----S-GVG-T-KEA 527 (986)
T ss_dssp -----------------------CTTSB-----------------------------HHHHHHT-----T-CSS-C-HHH
T ss_pred -----------------------ccCCc-----------------------------HHHHHHH-----h-hcC-H-HHH
Confidence 00000 0011100 0 001 1 456
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||||||
T Consensus 528 v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD 580 (986)
T 2iw3_A 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580 (986)
T ss_dssp HHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCC
T ss_pred HHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 88899999996556789999999999999999999999999999999999999
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.4e-28 Score=231.15 Aligned_cols=133 Identities=20% Similarity=0.289 Sum_probs=93.9
Q ss_pred eeeeEeeCC------CeeEEEeCC-----cEEEEECCCCCcHHHHHHHHHhCCcccCCcee------EEEeccccccCch
Q psy2689 63 ENFSLSPCL------KVQKQIASG-----RRYGLVGPNGHGKTTLLRHIATRALAIPSSID------LLYCEQEVEASDD 125 (262)
Q Consensus 63 ~~v~~~~~~------~isl~i~~G-----e~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~------i~~~~~~i~~~~~ 125 (262)
.+++++|.. +++|++.+| |++||+||||||||||+++|+| +..|++|+ |.|..|++....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G--l~~p~~G~~~~~~~i~~~~q~~~~~~- 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG--ALKPDEGQDIPKLNVSMKPQKIAPKF- 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT--SSCCSBCCCCCSCCEEEECSSCCCCC-
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhc--CCCCCCCcCccCCcEEEecccccccC-
Confidence 445555543 789999888 7899999999999999999998 67888885 333333221100
Q ss_pred hHHHHHHhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhc
Q psy2689 126 SAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 205 (262)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (262)
..++. +.+ ...+. ....
T Consensus 427 -----------------------------~~tv~-----------------------------e~~---~~~~~--~~~~ 443 (608)
T 3j16_B 427 -----------------------------PGTVR-----------------------------QLF---FKKIR--GQFL 443 (608)
T ss_dssp -----------------------------CSBHH-----------------------------HHH---HHHCS--STTT
T ss_pred -----------------------------CccHH-----------------------------HHH---HHHhh--cccc
Confidence 00000 000 00000 0011
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
....+.++++.+++. ...++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 444 ~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD 499 (608)
T 3j16_B 444 NPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499 (608)
T ss_dssp SHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCC
T ss_pred cHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 123466788899997 46789999999999999999999999999999999999999
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-28 Score=233.95 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
..++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 199 ~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD 253 (608)
T 3j16_B 199 PEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253 (608)
T ss_dssp HHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred HHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCC
Confidence 45788999999997 56889999999999999999999999999999999999998
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=3e-27 Score=230.08 Aligned_cols=51 Identities=31% Similarity=0.397 Sum_probs=46.6
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCC--EeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT--LLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~--lLlLDEPT~~LD 262 (262)
.+++.+|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD 236 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 236 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCC
Confidence 468889997544688999999999999999999999998 999999999998
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.2e-27 Score=226.96 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
++.++++.+|+. ...++++.+|||||||||+|||||+.+|++||||||||+||
T Consensus 118 ~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD 170 (538)
T 3ozx_A 118 KKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170 (538)
T ss_dssp CHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 467889999997 56789999999999999999999999999999999999998
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2.9e-25 Score=216.18 Aligned_cols=55 Identities=35% Similarity=0.427 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC---CEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P---~lLlLDEPT~~LD 262 (262)
.++.+.+..+|+.....++++.+|||||||||+|||||+.+| +||||||||++||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD 578 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 578 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCC
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCC
Confidence 456778888998654567889999999999999999999987 4999999999998
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=7.9e-24 Score=208.90 Aligned_cols=56 Identities=34% Similarity=0.367 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccC---CCEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE---PTLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~---P~lLlLDEPT~~LD 262 (262)
..++.++|+.+|+.....++++.+|||||||||+|||+|+.+ |+||||||||+|||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 765 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLH 765 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCC
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence 346789999999975345788999999999999999999996 79999999999998
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=2.2e-24 Score=175.64 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=36.6
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.|+.. ..+. ....|+|||||++||||++.+|++|+|||||++||
T Consensus 72 ~g~~~-~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld 115 (171)
T 4gp7_A 72 LGKLT-VVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQ 115 (171)
T ss_dssp TTCCE-EEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHH
T ss_pred CCCeE-EEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHH
Confidence 45542 3333 45679999999999999999999999999999987
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=2.7e-23 Score=190.86 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 231 FSGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 231 LSgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
|||||||||+||++|+.+| ++|||||||+|||
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD 329 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIG 329 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCC
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCC
Confidence 6999999999999999999 9999999999998
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4e-27 Score=219.50 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=97.6
Q ss_pred eEEEeeeeEeeCCCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-e-EEEeccccccCchhHHHHHHhhhH
Q psy2689 59 DIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-D-LLYCEQEVEASDDSAVNIVLSADK 136 (262)
Q Consensus 59 ~i~i~~v~~~~~~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-~-i~~~~~~i~~~~~~~~~~~~~~~~ 136 (262)
+++++|+++.|+ +++|++.+|++++|+||||||||||+|+|+| +..|++| + |++++. ...
T Consensus 118 mi~~~nl~~~y~-~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G--l~~p~~G~~pI~vdg~-~~~-------------- 179 (460)
T 2npi_A 118 MKYIYNLHFMLE-KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCS--YALKFNAYQPLYINLD-PQQ-------------- 179 (460)
T ss_dssp HHHHHHHHHHHH-HHHHHSSSCCCEEEEESTTSSHHHHHHHHHH--TTHHHHCCCCEEEECC-TTS--------------
T ss_pred hhhhhhhhehhh-cCceEeCCCCEEEEECCCCCCHHHHHHHHhC--cccccCCceeEEEcCC-ccC--------------
Confidence 467888888886 7999999999999999999999999999998 6788999 8 998872 100
Q ss_pred HHHHHHHHhhHHHHhhhcCchh-hhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHH
Q psy2689 137 NRVKLLKECSKLEQVEASDDSA-VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215 (262)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 215 (262)
.+.+..+...+.. .....+. .|+ +.. ..........++.++++
T Consensus 180 -~i~~vpq~~~l~~-~~~~~tv~eni-~~~---------------------------------~~~~~~~~~~~~~~ll~ 223 (460)
T 2npi_A 180 -PIFTVPGCISATP-ISDILDAQLPT-WGQ---------------------------------SLTSGATLLHNKQPMVK 223 (460)
T ss_dssp -CSSSCSSCCEEEE-CCSCCCTTCTT-CSC---------------------------------BCBSSCCSSCCBCCEEC
T ss_pred -Ceeeeccchhhcc-cccccchhhhh-ccc---------------------------------ccccCcchHHHHHHHHH
Confidence 0000000000000 0000000 011 000 00000001123445677
Q ss_pred hCCCChhhhcCCCCCCCHHHHHHHHHHHH--HccCCCE----eEecC-CCCCCC
Q psy2689 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARA--LFLEPTL----LLLDE-PTNHLD 262 (262)
Q Consensus 216 ~lgl~~~~~~~~~~~LSgGerqRv~LArA--L~~~P~l----LlLDE-PT~~LD 262 (262)
.+|+.. ..+ +.+|||||||||+|||| |+.+|++ ||||| ||++||
T Consensus 224 ~~gl~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD 274 (460)
T 2npi_A 224 NFGLER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLD 274 (460)
T ss_dssp CCCSSS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSC
T ss_pred HhCCCc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccC
Confidence 889874 334 77899999999999999 9999999 99999 999998
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=2.4e-22 Score=199.26 Aligned_cols=55 Identities=35% Similarity=0.427 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC---CEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P---~lLlLDEPT~~LD 262 (262)
.++.++|+.+|+.....++++.+|||||||||+|||||+.+| +||||||||+|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 880 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 880 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCC
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCC
Confidence 345788999999753567889999999999999999999875 9999999999998
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=8e-22 Score=196.08 Aligned_cols=56 Identities=32% Similarity=0.407 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC---CEeEecCCCCCCC
Q psy2689 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPTNHLD 262 (262)
Q Consensus 207 ~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P---~lLlLDEPT~~LD 262 (262)
..++.++|+.+|+.....++++.+|||||||||+|||||+++| +||||||||+|||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD 840 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence 4567789999999754567889999999999999999999876 7999999999998
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=3.4e-22 Score=198.74 Aligned_cols=55 Identities=35% Similarity=0.422 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC---CEeEecCCCCCCC
Q psy2689 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPTNHLD 262 (262)
Q Consensus 208 ~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P---~lLlLDEPT~~LD 262 (262)
.++.++|+.+|+.....++++.+|||||||||+|||||+.+| +||||||||+|||
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 898 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLH 898 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCC
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence 345788999999643567889999999999999999999875 9999999999998
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=2.6e-23 Score=174.78 Aligned_cols=35 Identities=29% Similarity=0.208 Sum_probs=32.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEE
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~ 114 (262)
|.+|++++|+||||||||||+++|+| + .|++|+|.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~G--l-~p~~G~I~ 53 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAV--Q-ALQSKQVS 53 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHH--H-HHHTTSCS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhc--C-CCcCCeee
Confidence 47899999999999999999999998 6 88899884
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=1.2e-21 Score=174.76 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=35.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHc----cCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALF----LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~----~~P~lLlLDEPT~~LD 262 (262)
.++++.+||||||||++|||||+ .+|++|||||||++||
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 45678899999999999999997 5789999999999998
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.81 E-value=6.4e-20 Score=166.42 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=36.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc------cCCCEeEecCCCCCCC
Q psy2689 225 EKSTKEFSGGWRMRVSLARALF------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~~LSgGerqRv~LArAL~------~~P~lLlLDEPT~~LD 262 (262)
++++.+|||||||||+|||||+ .+|++|||||||++||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD 317 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLD 317 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCC
Confidence 5678899999999999999999 7999999999999998
No 70
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=4.5e-23 Score=183.42 Aligned_cols=120 Identities=14% Similarity=0.063 Sum_probs=79.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce--eEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHhhhc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI--DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEAS 154 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g--~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (262)
+.+|+++||+||||||||||+++|+| +..|..| .|.+..++....+. .. ..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g--ll~~~~G~~~v~~v~qd~~~~~~-t~-------------~e----------- 139 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA--LLARWDHHPRVDLVTTDGFLYPN-AE-------------LQ----------- 139 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH--HHHTSTTCCCEEEEEGGGGBCCH-HH-------------HH-----------
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh--hccccCCCCeEEEEecCccCCcc-cH-------------HH-----------
Confidence 78999999999999999999999998 5556554 46555555332211 00 00
Q ss_pred CchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCCCHH
Q psy2689 155 DDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGG 234 (262)
Q Consensus 155 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSgG 234 (262)
|+.+... ...........+.++|+.++ .. ..+.++..||||
T Consensus 140 -----~~~~~~~--------------------------------~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G 180 (312)
T 3aez_A 140 -----RRNLMHR--------------------------------KGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHL 180 (312)
T ss_dssp -----HTTCTTC--------------------------------TTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETT
T ss_pred -----HHHHHHh--------------------------------cCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChh
Confidence 0000000 00011122344556666666 32 234557789999
Q ss_pred HHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 235 WRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 235 erqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
|+||+++|||++.+|+|||||||+..+|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCC
Confidence 9999999999999999999999999875
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.79 E-value=5.4e-22 Score=182.31 Aligned_cols=126 Identities=11% Similarity=0.135 Sum_probs=85.1
Q ss_pred CeeEEEeCCc--------------------EEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHH
Q psy2689 72 KVQKQIASGR--------------------RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131 (262)
Q Consensus 72 ~isl~i~~Ge--------------------~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~ 131 (262)
+++|+|++|+ ++||+||||||||||+|+|+| +..|++|+|.+++.++...
T Consensus 41 ~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G--l~~p~~GsI~~~g~~~t~~-------- 110 (413)
T 1tq4_A 41 LIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG--IGNEEEGAAKTGVVEVTME-------- 110 (413)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT--CCTTSTTSCCCCC----CC--------
T ss_pred hccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC--CCCccCceEEECCeeccee--------
Confidence 5666789999 999999999999999999998 6789999998877654210
Q ss_pred HhhhHHHHHHHHHhhHHHHhhhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHH
Q psy2689 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRAR 211 (262)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (262)
..+.+ ... +++.+..+. . ... ....++.
T Consensus 111 --------------~~v~q---~~~----------------~~~ltv~D~---------~--------g~~--~~~~~~~ 138 (413)
T 1tq4_A 111 --------------RHPYK---HPN----------------IPNVVFWDL---------P--------GIG--STNFPPD 138 (413)
T ss_dssp --------------CEEEE---CSS----------------CTTEEEEEC---------C--------CGG--GSSCCHH
T ss_pred --------------EEecc---ccc----------------cCCeeehHh---------h--------ccc--chHHHHH
Confidence 00000 000 000000000 0 000 0012467
Q ss_pred HHHHhCCCChhhhcCCCCCCCHH--HHHHHHHHHHHcc----------CCCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGG--WRMRVSLARALFL----------EPTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgG--erqRv~LArAL~~----------~P~lLlLDEPT~~LD 262 (262)
++++.+++... +..+. ||+| |+||++||+||+. +|++|+|||||++||
T Consensus 139 ~~L~~~~L~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD 198 (413)
T 1tq4_A 139 TYLEKMKFYEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQ 198 (413)
T ss_dssp HHHHHTTGGGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCT
T ss_pred HHHHHcCCCcc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCC
Confidence 78888888632 23333 9999 9999999999999 999999999999998
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=1.1e-20 Score=154.97 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=36.6
Q ss_pred hhcCCCCCCCHHHHHHHHHHHH-----HccCCCEeEecC--CCCCCC
Q psy2689 223 MQEKSTKEFSGGWRMRVSLARA-----LFLEPTLLLLDE--PTNHLD 262 (262)
Q Consensus 223 ~~~~~~~~LSgGerqRv~LArA-----L~~~P~lLlLDE--PT~~LD 262 (262)
..++++.+||||||||++|||| |+.+|++||||| ||++||
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld 115 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS 115 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGC
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCC
Confidence 3456788999999999999996 999999999999 999998
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.75 E-value=1.9e-21 Score=172.03 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=44.8
Q ss_pred EEEeeeeEeeCC----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEe
Q psy2689 60 IKVENFSLSPCL----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 116 (262)
Q Consensus 60 i~i~~v~~~~~~----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~ 116 (262)
|+++||++.|+. ++||+|++|++++|+||||||||||+++|+| +. +|+|...
T Consensus 102 i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g--l~---~G~I~~~ 157 (305)
T 2v9p_A 102 FNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH--FL---GGSVLSF 157 (305)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH--HH---TCEEECG
T ss_pred EEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh--hc---CceEEEE
Confidence 677888888742 7899999999999999999999999999999 44 7888653
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=8.2e-20 Score=161.65 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=85.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
+++|++.+|++++|+||||||||||+++|+| +..|.+|+|.+.+.++.... .. .+...+.. ...+..+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag--~l~~~~g~V~l~g~d~~r~~--a~-------~ql~~~~~-~~~i~~v 159 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH--RLKNEGTKVLMAAGDTFRAA--AS-------DQLEIWAE-RTGCEIV 159 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHH--HHHHTTCCEEEECCCCSCHH--HH-------HHHHHHHH-HHTCEEE
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEEeecccchh--HH-------HHHHHHHH-hcCceEE
Confidence 4566789999999999999999999999998 66788999999998864211 00 01111100 0000000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
.+... . ..+..+ ..+++.... ... .+ ..+++.+|+.. ..++++.+|
T Consensus 160 ~q~~~-~-------------~~~~~~---------v~e~l~~~~--~~~--~d------~~lldt~gl~~-~~~~~~~eL 205 (302)
T 3b9q_A 160 VAEGD-K-------------AKAATV---------LSKAVKRGK--EEG--YD------VVLCDTSGRLH-TNYSLMEEL 205 (302)
T ss_dssp CCC---C-------------CCHHHH---------HHHHHHHHH--HTT--CS------EEEECCCCCSS-CCHHHHHHH
T ss_pred EecCC-c-------------cCHHHH---------HHHHHHHHH--HcC--Cc------chHHhcCCCCc-chhHHHHHH
Confidence 00000 0 000000 011111000 000 00 12456677763 445667889
Q ss_pred CHHHHHHHHHHHHHccCCC--EeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPT--LLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~--lLlLDEPT~~LD 262 (262)
| |||++|||||+.+|+ +|+|| ||++||
T Consensus 206 S---kqr~~iaral~~~P~e~lLvLD-ptsglD 234 (302)
T 3b9q_A 206 I---ACKKAVGKIVSGAPNEILLVLD-GNTGLN 234 (302)
T ss_dssp H---HHHHHHHTTSTTCCSEEEEEEE-GGGGGG
T ss_pred H---HHHHHHHHhhccCCCeeEEEEe-CCCCcC
Confidence 9 999999999999999 99999 999997
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=1.6e-21 Score=164.82 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=32.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
++||+|.+|++++|+||||||||||+++|+| +. | |+|.+ +.++.
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g--~~-p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLN--EF-P--NYFYF-SVSCT 58 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHH--HS-T--TTEEE-CCCEE
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHh--hC-C--CcEEE-eeccc
Confidence 7788899999999999999999999999998 44 5 88888 76653
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=6.8e-18 Score=151.53 Aligned_cols=39 Identities=44% Similarity=0.591 Sum_probs=35.6
Q ss_pred hcCCCCCCCHHHHH------HHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRM------RVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerq------Rv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+||||||| |+++||||+.+|++|||||||+|||
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD 286 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 286 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCC
Confidence 46788999999999 6788889999999999999999998
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=3.8e-19 Score=160.67 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=85.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccCchhHHHHHHhhhHHHHHHHHHhhHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (262)
+++|++.+|++++|+||||||||||+++|+| +..|.+|+|.+.+.++.... . ..+...+.. ...+..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag--~l~~~~G~V~l~g~D~~r~~--a-------~eql~~~~~-r~~i~~v 216 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH--RLKNEGTKVLMAAGDTFRAA--A-------SDQLEIWAE-RTGCEIV 216 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHH--HHHHTTCCEEEECCCCSCHH--H-------HHHHHHHHH-HHTCEEE
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHh--hccccCCEEEEecccccccc--h-------hHHHHHHHH-hcCeEEE
Confidence 4677789999999999999999999999998 56788999999998864211 0 001111100 0001000
Q ss_pred hhcCchhhhHHhhhhhhhHHHHhhhhhccccccchhHHHHHHHHHHHhcCChhcHHHHHHHHHHhCCCChhhhcCCCCCC
Q psy2689 152 EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231 (262)
Q Consensus 152 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 231 (262)
.+... ... +..+ ..+++.... ... .+ ..+++.+|+.. ..++++.+|
T Consensus 217 ~q~~~-~~~-------------p~~t---------v~e~l~~~~--~~~--~d------~~lldt~Gl~~-~~~~~~~eL 262 (359)
T 2og2_A 217 VAEGD-KAK-------------AATV---------LSKAVKRGK--EEG--YD------VVLCDTSGRLH-TNYSLMEEL 262 (359)
T ss_dssp CCSSS-SCC-------------HHHH---------HHHHHHHHH--HTT--CS------EEEEECCCCSS-CCHHHHHHH
T ss_pred Eeccc-ccC-------------hhhh---------HHHHHHHHH--hCC--CH------HHHHHhcCCCh-hhhhHHHHH
Confidence 00000 000 0000 011111000 000 00 12456677763 345667889
Q ss_pred CHHHHHHHHHHHHHccCCC--EeEecCCCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPT--LLLLDEPTNHLD 262 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~--lLlLDEPT~~LD 262 (262)
| +||++|||||+.+|+ +|+|| ||++||
T Consensus 263 S---kqr~~iaral~~~P~e~lLvLD-pttglD 291 (359)
T 2og2_A 263 I---ACKKAVGKIVSGAPNEILLVLD-GNTGLN 291 (359)
T ss_dssp H---HHHHHHHHHSTTCCSEEEEEEE-GGGGGG
T ss_pred H---HHHHHHHHHHhcCCCceEEEEc-CCCCCC
Confidence 9 999999999999999 99999 999997
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=5.7e-20 Score=160.25 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=23.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
.+||+||||||||||+|+|+| +..|++|+|.++|+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g--~~~~~~G~i~~~g~~i~ 41 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK--SQVSRKASSWNREEKIP 41 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHC------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhC--CCCCCCCccccCCcccC
Confidence 489999999999999999998 67899999999988763
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.70 E-value=2e-16 Score=142.99 Aligned_cols=38 Identities=34% Similarity=0.239 Sum_probs=35.7
Q ss_pred cCCCC-CCCHHHHHHHHHHHHHc---------cCCCEeEecCCCCCCC
Q psy2689 225 EKSTK-EFSGGWRMRVSLARALF---------LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 225 ~~~~~-~LSgGerqRv~LArAL~---------~~P~lLlLDEPT~~LD 262 (262)
++++. .||||||||++||++|+ .+|+||||||||++||
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD 306 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELD 306 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCC
Confidence 56677 89999999999999999 8999999999999998
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.69 E-value=2.5e-18 Score=153.97 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=41.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
+++|.+.+|++++|+||||||||||+++|+| +..|++|.|.+++.+
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g--~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIME--FIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGG--GSCTTSCEEEEESSC
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhC--CCcCCCcEEEECCee
Confidence 5788999999999999999999999999998 678899999998754
No 81
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-17 Score=138.67 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHH-HHHHHHHccCCCEeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMR-VSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqR-v~LArAL~~~P~lLlLDEPT~~LD 262 (262)
.+..++...++.......++..+|+||+|| +..+++++.+|.++++|||||++|
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK 182 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecC
Confidence 344556667776433344577899999999 899999999999999999999997
No 82
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.62 E-value=1.1e-15 Score=141.13 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHc----cCCCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALF----LEPTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~----~~P~lLlLDEPT~~LD 262 (262)
+++..||||||||++||++|+ .+|++|||||||++||
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD 369 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD 369 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCC
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCC
Confidence 445679999999999999999 5799999999999998
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.62 E-value=3.6e-16 Score=148.07 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=38.1
Q ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 217 lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||
T Consensus 341 ~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld 384 (525)
T 1tf7_A 341 QNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALA 384 (525)
T ss_dssp TTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHT
T ss_pred CCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHH
Confidence 4543 3445677899999999999999999999999999 999987
No 84
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=1.3e-16 Score=159.00 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.8
Q ss_pred HHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 214 l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+..+|..+ ...+..++||+||+|++.|+++ +.+|+||||||||+|||
T Consensus 720 ~~~ig~~d-~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 720 FTRMGAAD-NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp EEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHhCChHH-HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 34456543 3445678999999999999999 89999999999999998
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.58 E-value=2.3e-15 Score=132.09 Aligned_cols=46 Identities=17% Similarity=0.050 Sum_probs=38.0
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-eEEEecccc
Q psy2689 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-DLLYCEQEV 120 (262)
Q Consensus 73 isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-~i~~~~~~i 120 (262)
+++.|.+|++++|+||||||||||+++|++ ...|.+| .|.|.+.+.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQAL--QWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHH--HHHHTSCCCEEEEESSS
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHH--HHHHHcCCeEEEEeCcC
Confidence 344589999999999999999999999998 4566667 788776654
No 86
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.56 E-value=6.5e-15 Score=128.29 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=38.4
Q ss_pred HHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCC--CCC
Q psy2689 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTN--HLD 262 (262)
Q Consensus 210 ~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~--~LD 262 (262)
+.++++.+++.. ..++++..||+|+.+++ ++++.+|+++|+||||+ ++|
T Consensus 99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d 149 (279)
T 1nlf_A 99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEE 149 (279)
T ss_dssp HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSC
T ss_pred hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCC
Confidence 445566677653 35677899999997765 68889999999999999 775
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.55 E-value=3.6e-16 Score=133.83 Aligned_cols=36 Identities=6% Similarity=0.021 Sum_probs=31.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 225 ~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
+.++..||+||+||+++ ++++.+|+++|||||....
T Consensus 111 ~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 111 TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred CeecccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 45577899999999988 6889999999999998654
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.55 E-value=2.1e-15 Score=130.69 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC-ceeEEEeccccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEVE 121 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~-~g~i~~~~~~i~ 121 (262)
+.+|++++|+||||||||||+++|+| +..|+ +|+|.+++.++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIE 65 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcce
Confidence 68999999999999999999999998 66776 899999887753
No 89
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=1.6e-17 Score=138.47 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHH----HHHHHHHHHccCCCEeEecCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWR----MRVSLARALFLEPTLLLLDEPTNH 260 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGer----qRv~LArAL~~~P~lLlLDEPT~~ 260 (262)
++.++++.+++.. ..+.++..+|+|++ ||+++|++++.+|++|++||||++
T Consensus 69 ~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~ 123 (211)
T 3asz_A 69 LYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRD 123 (211)
T ss_dssp HHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHT
T ss_pred HHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHH
Confidence 3455566666553 34557889999974 788999999999999999999988
No 90
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.55 E-value=5.7e-15 Score=147.50 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=29.1
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|++|++.+|++++|+||||||||||||+|+.
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 7888999999999999999999999999964
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.53 E-value=1.3e-15 Score=153.66 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=34.6
Q ss_pred eeEEEee-----eeEee-CC-----CeeEEEeC-------CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 58 VDIKVEN-----FSLSP-CL-----KVQKQIAS-------GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 58 ~~i~i~~-----v~~~~-~~-----~isl~i~~-------Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..|.+++ |++.| ++ |++|++.+ |++++|+||||||||||||+| |
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence 3588999 88887 43 88999887 999999999999999999999 7
No 92
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.53 E-value=2.6e-17 Score=137.40 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=24.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+|.+|+++||+||||||||||+++|+|.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999999999993
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.50 E-value=3.3e-15 Score=134.47 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=51.3
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
.++++++++.|+ + ++ |+|.+|+++||+||||||||||+++|+| +..|+.|.|.+.|++
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g--~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICN--GASADIIVLALIGER 108 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHH--HSCCSEEEEEEESCC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhc--CCCCCEEEEEEeccc
Confidence 367788888886 4 67 9999999999999999999999999998 678899999888865
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=9.5e-17 Score=132.70 Aligned_cols=37 Identities=32% Similarity=0.289 Sum_probs=31.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
|++++|+||||||||||+++|+| +.. ++| |.++|.++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g--~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASE--VLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHH--HHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHh--hcc-cCC-EEEcCEec
Confidence 78999999999999999999998 445 778 88877654
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.50 E-value=1.3e-14 Score=121.69 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=32.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~ 119 (262)
|++|++++|+||||||||||+++|+|.....+ ..+.+++++.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 68999999999999999999999998433333 33356666543
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.47 E-value=3.2e-14 Score=120.82 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=34.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
|++|++++|+||||||||||+++|++.++..+..+.+++.+.+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 6899999999999999999999999532435566666665543
No 97
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.45 E-value=2.9e-15 Score=138.78 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=51.8
Q ss_pred eEEEeeeeEeeC-C-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 59 DIKVENFSLSPC-L-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 59 ~i~i~~v~~~~~-~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
.++++++++.|+ + ++ |+|.+|++++|+||||||||||+++|+| +..|+.|.|.++|+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag--~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMAR--YTRADVIVVGLIGE 193 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHH--HSCCSEEEEEEESC
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhc--ccCCCeEEEEEece
Confidence 467889999996 4 78 9999999999999999999999999998 67899999999987
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.45 E-value=8.1e-15 Score=143.91 Aligned_cols=34 Identities=35% Similarity=0.201 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHH--ccCCCEeEecCC---CCCCC
Q psy2689 229 KEFSGGWRMRVSLARAL--FLEPTLLLLDEP---TNHLD 262 (262)
Q Consensus 229 ~~LSgGerqRv~LArAL--~~~P~lLlLDEP---T~~LD 262 (262)
..+|+|+++++.+|+++ +.+|+++||||| |++||
T Consensus 634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 35899999999999999 999999999999 88876
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.44 E-value=4.1e-14 Score=125.13 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=38.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
+|++++|+||||||||||+++|+| +..|++|+|.+.+.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag--ll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR--YYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeecCCC
Confidence 699999999999999999999998 678999999999998753
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.43 E-value=3.7e-16 Score=138.06 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=30.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCC-CC
Q psy2689 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH-LD 262 (262)
Q Consensus 225 ~~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~-LD 262 (262)
++++.++|||+|||+.+|||++ +|++||||++ ||
T Consensus 108 ~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 108 ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 4567789999999999999986 9999999985 87
No 101
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=3e-14 Score=128.89 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=38.2
Q ss_pred CeeEEEeC--CcEEEEECCCCCcHHHHHHHHHhCCcccCCc----eeEEEe
Q psy2689 72 KVQKQIAS--GRRYGLVGPNGHGKTTLLRHIATRALAIPSS----IDLLYC 116 (262)
Q Consensus 72 ~isl~i~~--Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~----g~i~~~ 116 (262)
.++++|.+ |++++|+||||||||||+++|+| ++.|+. |+|+++
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~g--l~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAA--VFNTTSAWEYGREFVF 208 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHH--HTTCEEECCTTHHHHH
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHH--HhCCCcchhhHHHHHH
Confidence 58889999 99999999999999999999998 677877 777663
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.42 E-value=1.4e-13 Score=123.89 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=36.6
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCc----ee-EEEecccc
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS----ID-LLYCEQEV 120 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~----g~-i~~~~~~i 120 (262)
.+.|++|++++|+||||||||||+++|++.....|+. |. |++++.+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 3568999999999999999999999999842224554 67 67776653
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=6e-13 Score=111.41 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=35.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+.+|++++|+||||||||||+++|++ ...+..|.|.|.+.+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc
Confidence 68999999999999999999999997 3446678888876553
No 104
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.41 E-value=9.1e-14 Score=110.32 Aligned_cols=39 Identities=46% Similarity=0.561 Sum_probs=36.3
Q ss_pred hcCCCCCCCHHHHHHHHHH------HHHccCCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLA------RALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LA------rAL~~~P~lLlLDEPT~~LD 262 (262)
.++++.+||||||||++|| |||+.+|++|||||||++||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD 95 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 95 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCC
Confidence 4678999999999999876 89999999999999999998
No 105
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.40 E-value=6.7e-15 Score=118.16 Aligned_cols=59 Identities=20% Similarity=0.003 Sum_probs=50.0
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+..+++++.|+. ++||+|.+|++++|+||||||||||+|+|+| +. |.+|+|.+++.++.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g--~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ--GI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH--HT-TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH--hC-CCCCeEEECCEeee
Confidence 344556677764 7899999999999999999999999999998 45 89999999888763
No 106
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.40 E-value=6.1e-16 Score=125.86 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=30.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCcccCC---ceeEEEeccccc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVE 121 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~~~p~---~g~i~~~~~~i~ 121 (262)
++++|+|+||||||||+++|+| ++.|. .|.|.+++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~--~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP--ILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH--HHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HhhhcCCceEEEEEcCcccc
Confidence 5799999999999999999998 66776 799999988754
No 107
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.39 E-value=5.5e-15 Score=126.35 Aligned_cols=38 Identities=34% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---hCCcccCCceeEEEecc
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIA---TRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~---g~~~~~p~~g~i~~~~~ 118 (262)
++++++|+||||||||||+++|+ | +..|+.|+|.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg--~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG--LQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHH
Confidence 57999999999999999999999 7 55677777666543
No 108
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.36 E-value=8.6e-13 Score=109.84 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=24.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.+|++++|+||||||||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999999996
No 109
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.35 E-value=2.3e-14 Score=135.59 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=41.6
Q ss_pred CeeE-EEeCCcEEEEECCCCCcHHHHHHH--HHhCCcccCCceeEEEeccc
Q psy2689 72 KVQK-QIASGRRYGLVGPNGHGKTTLLRH--IATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl-~i~~Ge~~~LvGpNGsGKSTLlk~--i~g~~~~~p~~g~i~~~~~~ 119 (262)
+++| .|++|++++|+||||||||||+++ ++| +..|++|.|++.+++
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~G--l~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG--IIEFDEPGVFVTFEE 78 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHCCCEEEEESSS
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH--HHhCCCCEEEEEEeC
Confidence 6788 899999999999999999999999 677 667789999999876
No 110
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.32 E-value=1.6e-12 Score=128.26 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=28.4
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|++|+ .+|++++|+||||||||||||+|+|
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence 77888 8999999999999999999999997
No 111
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.32 E-value=1.1e-12 Score=116.10 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.5
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 73 isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
++|...+|++++|+|||||||||++..|++ ...+..++|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEcccc
Confidence 444567899999999999999999999998 4567788898877664
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=2.2e-14 Score=131.95 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=31.8
Q ss_pred eEEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 59 DIKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 59 ~i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.|.++|++++|++ +++|+| +||||||||||||+++|+|..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence 4778888888865 788887 999999999999999999853
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.30 E-value=1.4e-13 Score=112.60 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=35.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.+.+|++++|+||||||||||+++|++ . ++.|.|.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~--~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN--L--PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT--C--SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh--c--cCCCeEEEcccch
Confidence 468999999999999999999999998 2 6788999987764
No 114
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.29 E-value=1.8e-12 Score=129.08 Aligned_cols=54 Identities=30% Similarity=0.384 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCCC--EeEecCCCCCCC
Q psy2689 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT--LLLLDEPTNHLD 262 (262)
Q Consensus 209 ~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P~--lLlLDEPT~~LD 262 (262)
+..++|..+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD 498 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLH 498 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCC
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCC
Confidence 345678889997444688999999999999999999999887 999999999998
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.27 E-value=6.4e-14 Score=116.79 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=33.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccC---CceeEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p---~~g~i~~~~~~i 120 (262)
.+|+++||+||||||||||+++|+| +..| ..|.|.+++..+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~--~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA--ALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH--HHHHTTCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHhhcCCceEEEecCCCcC
Confidence 5899999999999999999999998 4443 467777766544
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.26 E-value=1.5e-12 Score=117.43 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC-ceeEEEecccc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEV 120 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~-~g~i~~~~~~i 120 (262)
.+.+|++++|+||||||||||+++|+| +..|+ .|.|...+.++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPI 162 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcH
Confidence 567899999999999999999999998 44554 56666554433
No 117
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.25 E-value=8.9e-13 Score=118.76 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=29.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCccc-CCceeEEEe
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAI-PSSIDLLYC 116 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~-p~~g~i~~~ 116 (262)
.+|++++|+||||||||||+|+|+| ... |..|+|.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g--~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLG--LQNEILTNDVSNV 250 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHC--CSSCCCCC-----
T ss_pred cCCCEEEEECCCCccHHHHHHHHhc--cccccccCCcccc
Confidence 4799999999999999999999998 456 889998875
No 118
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.23 E-value=3.5e-13 Score=118.34 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEeEecCCCCCCC
Q psy2689 227 STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262 (262)
Q Consensus 227 ~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~~LD 262 (262)
+...+||||+||+++|++...+|+|||+||||+++|
T Consensus 131 y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 131 YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFN 166 (290)
T ss_dssp EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCC
T ss_pred CccccCCccccccccccceEcCCCEEEEeCccccCC
Confidence 346799999999999843333999999999999987
No 119
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.22 E-value=7.1e-12 Score=123.93 Aligned_cols=56 Identities=30% Similarity=0.371 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 206 ~~~~~~~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
...++. .|..+|+.....++++.+|||||+|||+||+||+.+| .+|||||||++||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld 413 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLH 413 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCC
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCC
Confidence 344554 6888999743368999999999999999999999999 4999999999997
No 120
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.21 E-value=6.7e-12 Score=124.83 Aligned_cols=51 Identities=29% Similarity=0.381 Sum_probs=45.5
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
++|..+||.....++++.+|||||+|||+||++|..+| .+|||||||++||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLd 538 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 538 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCC
Confidence 45888899743468999999999999999999999985 9999999999998
No 121
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.21 E-value=6.7e-12 Score=102.03 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=34.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcc----CCCEeEecCCCCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALFL----EPTLLLLDEPTNHLD 262 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~~----~P~lLlLDEPT~~LD 262 (262)
..+++..||||||||++|||+|+. +|+++||||||++||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD 100 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD 100 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCC
Confidence 346688999999999999999975 469999999999998
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.20 E-value=1.2e-11 Score=112.11 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=36.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCC-ceeEEEecccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEV 120 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~-~g~i~~~~~~i 120 (262)
+.+|++++|+||||||||||+++|+| +..|+ +|+|.+.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPI 175 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccH
Confidence 68999999999999999999999998 56666 89998776554
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.19 E-value=2.4e-12 Score=116.31 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 71 ~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
.+++|.+.+|++++|+||||||||||+++|+| +..|+.|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~--~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQ--EIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHT--TSCTTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh--cCCCCceEEEECCc
Confidence 36899999999999999999999999999998 67889999999764
No 124
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.18 E-value=8.9e-12 Score=124.31 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=44.9
Q ss_pred HHHHhCCCChhhhcCCCCCCCHHHHHHHHHHHHHccC--CCEeEecCCCCCCC
Q psy2689 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE--PTLLLLDEPTNHLD 262 (262)
Q Consensus 212 ~~l~~lgl~~~~~~~~~~~LSgGerqRv~LArAL~~~--P~lLlLDEPT~~LD 262 (262)
+.|..+||.....++++.+|||||+|||+||++|..+ |.+|||||||++||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLd 555 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLH 555 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCC
Confidence 3578889863336899999999999999999999999 59999999999998
No 125
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.17 E-value=1.4e-12 Score=119.90 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=45.9
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+.++++.+.|+. ++ + ..+|++++|+|||||||||||++|+| +..|++|+|.+.+.++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg--~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQ--ELNSSERNILTVEDPIE 206 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHH--HHCCTTSCEEEEESSCC
T ss_pred CCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHh--hcCCCCCEEEEecccch
Confidence 445566655532 34 3 37899999999999999999999998 56778999999988764
No 126
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.17 E-value=2.1e-13 Score=125.33 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+++|++..|+.++|||+|||||||||++|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 68999999999999999999999999999984
No 127
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.17 E-value=5.9e-11 Score=104.38 Aligned_cols=57 Identities=19% Similarity=0.079 Sum_probs=45.7
Q ss_pred EEEeeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 60 IKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+.++++++.|+. +++|+ +|++++|+|+||+||||++..|++ ...+..|+|.+.+.++
T Consensus 77 ~~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCc
Confidence 345566666643 56777 899999999999999999999998 5567788999988775
No 128
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.15 E-value=1.1e-13 Score=133.09 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=31.0
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-CceeEEEecccc
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-SSIDLLYCEQEV 120 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-~~g~i~~~~~~i 120 (262)
+|+++. +||||||||||||||++|+| +..| ++|.|.++|.++
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~G--l~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSG--VALPRGSGIVTRCPLVL 84 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHS--CC-------CCCSCEEE
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhC--CCCCCCCCeEEEcCEEE
Confidence 455554 99999999999999999998 4667 799999999886
No 129
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.14 E-value=2.1e-11 Score=113.74 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=43.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
++||+|.+ +++||+|||||||||||++|+| +..|++|+|.++|+++.
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G--l~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT--ALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHH--HHCCCTTTCCCCCTTSC
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc--CCCCCCCEEEECCEEcc
Confidence 88999999 9999999999999999999998 77899999999998764
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.14 E-value=1.2e-10 Score=98.21 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=33.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~ 119 (262)
|++|++++|+||||||||||++.|++.....| ..+.+++++.+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 68999999999999999999999998322333 45667776554
No 131
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.09 E-value=2.2e-13 Score=121.10 Aligned_cols=42 Identities=31% Similarity=0.245 Sum_probs=35.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC------cccCCceeEEEecccccc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA------LAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~------~~~p~~g~i~~~~~~i~~ 122 (262)
++++|+|+||||||||+++|.|.. +..|+.|+|.+++..+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence 589999999999999999999831 026889999999988754
No 132
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.06 E-value=2.9e-13 Score=117.88 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=34.8
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 73 isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
++|.+++| ++|+||||||||||+++|+|. ..+ +.|.+.+.++..
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~--~~~--~~i~i~g~~l~~ 82 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANE--SGL--NFISVKGPELLN 82 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHH--TTC--EEEEEETTTTCS
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHH--cCC--CEEEEEcHHHHh
Confidence 34456788 999999999999999999983 233 688888877643
No 133
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.00 E-value=1.5e-10 Score=109.18 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCCCCC-CHHHHHHHHHHHHHccCC--CEeEecCCCCCCC
Q psy2689 226 KSTKEF-SGGWRMRVSLARALFLEP--TLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~L-SgGerqRv~LArAL~~~P--~lLlLDEPT~~LD 262 (262)
+++..| ||||||||+|||||+.+| ++|||||||+|||
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld 431 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIG 431 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCC
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCC
Confidence 467788 999999999999999999 9999999999998
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.98 E-value=6.7e-12 Score=110.77 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=32.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEE---eccccc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY---CEQEVE 121 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~---~~~~i~ 121 (262)
.+..|++++|+||||||||||+|+|+ . ..|..|+|.+ .|.++.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~--~~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-G--EELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-S--CCCCCSCC---------CC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-H--hhCcccccccccCCCCCce
Confidence 35689999999999999999999999 4 5788999998 777654
No 135
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.98 E-value=1.2e-11 Score=104.77 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=42.7
Q ss_pred eEEEeeeeEeeCCCeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 59 DIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 59 ~i~i~~v~~~~~~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
.|.++|++..++. +|+|.+ ++++|+|||||||||||++|+| +..|++|.|.+++.++.
T Consensus 9 ~l~l~~~~~~~~~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g--~~~~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFAR--TFDLDE-LVTTLSGGNGAGKSTTMAAFVT--ALIPDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEEE--EECHHH-HHHHHHSCCSHHHHHHHHHHHH--HHSCCTTTC--------
T ss_pred EEEEEeeecccCC--EEEEcC-cEEEEECCCCCCHHHHHHHHhc--ccccCCCeEEECCEEcc
Confidence 4778888766654 667777 8999999999999999999998 67899999999988763
No 136
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.96 E-value=1.7e-11 Score=108.35 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=46.0
Q ss_pred EEEeeeeEeeCC---CeeEEE-------------------eCCcEEEEECCCCCcHHHHHHHHHhCCccc--CCceeEEE
Q psy2689 60 IKVENFSLSPCL---KVQKQI-------------------ASGRRYGLVGPNGHGKTTLLRHIATRALAI--PSSIDLLY 115 (262)
Q Consensus 60 i~i~~v~~~~~~---~isl~i-------------------~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~--p~~g~i~~ 115 (262)
|++++|++.|.. +++|.+ .+|+++||+||||||||||+++|+| +.. |++|+|.+
T Consensus 38 i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~--~l~~~~~~G~i~v 115 (308)
T 1sq5_A 38 LSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA--LLSRWPEHRRVEL 115 (308)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH--HHTTSTTCCCEEE
T ss_pred cchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH--HHhhCCCCCeEEE
Confidence 555666666643 566655 8999999999999999999999998 445 89999998
Q ss_pred ---eccc
Q psy2689 116 ---CEQE 119 (262)
Q Consensus 116 ---~~~~ 119 (262)
++..
T Consensus 116 i~~d~~~ 122 (308)
T 1sq5_A 116 ITTDGFL 122 (308)
T ss_dssp EEGGGGB
T ss_pred EecCCcc
Confidence 5544
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=3.6e-10 Score=91.51 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=25.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.+|+.++|+||||+|||||+++|++
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999999997
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.96 E-value=1.6e-10 Score=107.81 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=43.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
++||++.+|++++|+||||||||||+++|+| +..+.+|+|.+.+.++.
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLAR--QFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEECCCTT
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHH--HhhhcCCeEEEecCccc
Confidence 7888899999999999999999999999998 66788999999887753
No 139
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.96 E-value=1.8e-11 Score=109.66 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=47.8
Q ss_pred EEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 61 KVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 61 ~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+++++++.|+. +++|++.+|++++|+||||||||||+++|+| +..|..|+|.+.+.++.
T Consensus 31 e~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g--~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 31 ESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS--LLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH--HHHHTTCCEEEEEECGG
T ss_pred eeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH--hhhhCCCEEEEEEEcCc
Confidence 34444444432 5666789999999999999999999999998 67788999999998764
No 140
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.95 E-value=3.1e-10 Score=95.72 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=22.7
Q ss_pred CCeeEEEeCCcEEEEECCCCCcHHHHHHHHH-hC
Q psy2689 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIA-TR 103 (262)
Q Consensus 71 ~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~-g~ 103 (262)
+++||++.+|+++||+||||||||||+++|+ |.
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3788899999999999999999999999999 83
No 141
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.94 E-value=2.3e-09 Score=95.53 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=39.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
.+|++++|+||||||||||+++|+| +..|..|+|.+.+.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag--~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN--WLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEeecccc
Confidence 6899999999999999999999998 678899999999998754
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.90 E-value=1.7e-09 Score=98.89 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=30.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccC-----CceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIP-----SSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p-----~~g~i~~~~~~ 119 (262)
|.+|++++|+||||||||||++.|+-.....+ ..+.+++++.+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 68999999999999999999996542123333 23356666554
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=1.2e-09 Score=86.42 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|+.++|+||||+|||||+++|++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999999998
No 144
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.88 E-value=1.4e-09 Score=98.41 Aligned_cols=37 Identities=38% Similarity=0.537 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHH------HHHHHHccC-CCEeEecCCCCCCC
Q psy2689 226 KSTKEFSGGWRMRV------SLARALFLE-PTLLLLDEPTNHLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv------~LArAL~~~-P~lLlLDEPT~~LD 262 (262)
+++..|||||+||+ ++||||+.+ |++|||||||++||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD 319 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLD 319 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCC
Confidence 56789999999988 567999999 99999999999998
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.87 E-value=4.2e-09 Score=92.55 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=34.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-eEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-DLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-~i~~~~~~i 120 (262)
.+|++++|+||||+||||++..|++ ...+..| +|.+.+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCc
Confidence 4799999999999999999999997 4556667 788877665
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.83 E-value=1.5e-09 Score=89.28 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=24.9
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
|+++.+|+++||+||||||||||+++|+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 456789999999999999999999999983
No 147
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.81 E-value=1.7e-09 Score=91.04 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=33.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccC--CceeEEEecccc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIP--SSIDLLYCEQEV 120 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p--~~g~i~~~~~~i 120 (262)
..++|++++|+||||||||||+++|+| +..| ..|.|.+.+.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g--~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLK--TQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH--HSCTTTEEECCCEECSCC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhc--cCCCCceEEEEEecCCCC
Confidence 368999999999999999999999998 3443 578888877554
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.78 E-value=3e-09 Score=87.81 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=21.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+|++++|+||||||||||+++|+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999999998
No 149
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.73 E-value=7.6e-09 Score=83.60 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=34.9
Q ss_pred EEEeeeeEeeC-CCeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 60 IKVENFSLSPC-LKVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 60 i~i~~v~~~~~-~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.++|+ ..|. .++++.+.+| +++|+||||||||||+++|.+
T Consensus 7 l~i~nf-~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 7 LELKGF-KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEESB-GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEeCe-EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 566666 3454 5889999999 999999999999999999987
No 150
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=9.8e-10 Score=100.95 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=32.5
Q ss_pred EEeeeeEeeCC----CeeEEEeCCcE--EEEECCCCCcHHHHHHHHHhC
Q psy2689 61 KVENFSLSPCL----KVQKQIASGRR--YGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 61 ~i~~v~~~~~~----~isl~i~~Ge~--~~LvGpNGsGKSTLlk~i~g~ 103 (262)
++.+ ++.|++ ++||+|.+|++ +|||||||||||||+++|+|.
T Consensus 18 ~~~~-~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 18 PLAG-HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCCC-CC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EEee-EEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3344 445543 67778999999 999999999999999999984
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.71 E-value=7.9e-09 Score=84.22 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|++++|+||||||||||+++|+|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999999998
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=3e-09 Score=93.59 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=31.0
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEE---eccccc
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY---CEQEVE 121 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~---~~~~i~ 121 (262)
|++..|++++|+||||||||||+|+|+| +..|+.|+|.+ .|+++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g--~~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINP--GLKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHST--TCCCC-------------CC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcc--cccccccceecccCCCCCce
Confidence 3467899999999999999999999998 67899999998 777664
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.5e-08 Score=90.18 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 83 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 83 ~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+.|.||||+|||||+++|++. +..|..|.+.+++.++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~-l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES-IFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH-HSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHH-HcCCCCCeEEecceee
Confidence 999999999999999999983 5678889988877654
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.60 E-value=1.8e-08 Score=81.98 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
|++++|+||||||||||+++|++ +..|.+.+++.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccch
Confidence 68999999999999999999986 5578888887665
No 155
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.60 E-value=7.1e-09 Score=97.62 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=41.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
+++|.+.+|+.++|+||||||||||+++|+| +..|+.|.|.+.+..
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~--~i~~~~giitied~~ 297 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMM--FIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGG--GSCTTCCEEEEESSC
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHh--hCCCCCCEEEEcCcc
Confidence 5788899999999999999999999999998 567889999998754
No 156
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.59 E-value=4.4e-09 Score=90.24 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=30.2
Q ss_pred eEEEeee-eEee-CC-----CeeEEEeC---CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 59 DIKVENF-SLSP-CL-----KVQKQIAS---GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 59 ~i~i~~v-~~~~-~~-----~isl~i~~---Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++++|+ +++| ++ ++||+|.+ |++++|+|++||||||+.++|++
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5889999 9999 44 89999999 99999999999999999999997
No 157
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.58 E-value=4.4e-09 Score=86.64 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=35.5
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeE--EEeccccc
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL--LYCEQEVE 121 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i--~~~~~~i~ 121 (262)
++...+|++++|+||||||||||+++|++. + . ..|.+ ++++.++.
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~-l-~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQM-L-Y-QKGKLCYILDGDNVR 65 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHH-H-H-HTTCCEEEEEHHHHT
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHH-H-H-hcCceEEEecCchhh
Confidence 344578999999999999999999999983 2 2 45665 88877663
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=3.7e-08 Score=80.76 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=27.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g 111 (262)
++|.+|++++|+||||||||||+++|++. ..|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~--~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED--PSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC--TTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh--hCCCeE
Confidence 35789999999999999999999999984 334444
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.56 E-value=3.9e-08 Score=80.90 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
..+|++++|+||||||||||+++|++. . |.+.+++.++.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~--~----g~~~i~~d~~~ 64 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADE--T----GLEFAEADAFH 64 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH--H----CCEEEEGGGGS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh--h----CCeEEcccccc
Confidence 468999999999999999999999983 2 78888887763
No 160
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=7e-09 Score=91.55 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEE---ecccc
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY---CEQEV 120 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~---~~~~i 120 (262)
+++.+|++++|+||||+|||||+|+|+| ...|..|+|.+ .|+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g--~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP--ELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc--cccccccceeeecCCCccc
Confidence 3567899999999999999999999998 56788899887 66554
No 161
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.45 E-value=2.2e-08 Score=85.67 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=31.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHH---hCCcccCCceeEE
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIA---TRALAIPSSIDLL 114 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~---g~~~~~p~~g~i~ 114 (262)
.+|++++|+|||||||||++++|+ | +..+++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence 579999999999999999999999 6 6777888877
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=1.1e-07 Score=77.00 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|++++|+||||||||||+++|++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999999998
No 163
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.42 E-value=9e-08 Score=80.60 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=33.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
..+|++++|+|+||||||||+++|++ + .|+|.+.+++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~--~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEK--Y----KNDICLLTEPVE 55 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG--G----TTTEEEECCTHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh--c----cCCeEEEecCHH
Confidence 36899999999999999999999997 3 678888887653
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.40 E-value=4.5e-09 Score=98.72 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=36.6
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
.+.+++.++..+.|.|++||||||+++.|....+..++.+++.+...|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 689999999999999999999999999987532344444555554444
No 165
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.39 E-value=1.2e-07 Score=78.13 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=36.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~ 122 (262)
.+|++++|+|+||||||||+++|++ ...+..|.|.+.+.+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~--~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ--TLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHhhcCCeEEEeccCccc
Confidence 6799999999999999999999998 455667888887776543
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.38 E-value=9.8e-07 Score=74.02 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=29.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
+.+|++++|+||||||||||+..++.. . .+..+.+.|.+.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~-~-~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN-G-LKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH-H-HHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-H-HhcCCeEEEEEcc
Confidence 689999999999999999996655531 2 2334566665544
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.9e-07 Score=76.71 Aligned_cols=31 Identities=35% Similarity=0.251 Sum_probs=23.5
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++||++.+|.+++|+||+||||||+.+.|+.
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 6777899999999999999999999999996
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.37 E-value=6.1e-07 Score=80.95 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=31.3
Q ss_pred eCCcE-EEEECCCCCcHHHHHHHHHhCCcc---------cCCceeEEEeccccc
Q psy2689 78 ASGRR-YGLVGPNGHGKTTLLRHIATRALA---------IPSSIDLLYCEQEVE 121 (262)
Q Consensus 78 ~~Ge~-~~LvGpNGsGKSTLlk~i~g~~~~---------~p~~g~i~~~~~~i~ 121 (262)
..|-. ++|+|++|||||||++.|+|.... .+..+.|.++|..+.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~ 229 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE
Confidence 34544 999999999999999999985431 156688888876653
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.36 E-value=9e-07 Score=81.99 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=34.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-eEEEecccc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-DLLYCEQEV 120 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-~i~~~~~~i 120 (262)
-+.+|+++.|.|++|+|||||+..|++. ..+..| .|.|.+.+.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM 242 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC
Confidence 4789999999999999999999999872 223234 688877654
No 170
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.35 E-value=3.6e-07 Score=75.45 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=24.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
...+|++++|+||||||||||++.|++.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4468999999999999999999999973
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.32 E-value=8.8e-07 Score=79.07 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHccCCCEeEecCCCCCC
Q psy2689 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261 (262)
Q Consensus 230 ~LSgGerqRv~LArAL~~~P~lLlLDEPT~~L 261 (262)
.||.++.+|+..|...+.+++++|.|+|...+
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 69999999999999999999999999997543
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.31 E-value=1.1e-08 Score=98.18 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=38.8
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
++++.+..|+.+.|+||||+|||||+++|++. +.....|.+.+.+....
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~-l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL-LPTETLEDILVFPNPED 100 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT-SCCSSCEEEEEECCTTC
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHHHhcc-CCcccCCeEEEeCCccc
Confidence 56778899999999999999999999999983 33333377777766543
No 173
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.29 E-value=4.4e-07 Score=72.60 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=30.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.+|++++|+|||||||||++++|++. + |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~-~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ-L-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH-H-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh-h-----CcEEEeCccc
Confidence 46999999999999999999999972 1 6677777665
No 174
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.29 E-value=2e-07 Score=82.66 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=41.1
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+++|++.+|++++|+||||+||||++..|++ ...+..++|.+.+.|+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCCS
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCc
Confidence 4556678999999999999999999999998 45677899999888764
No 175
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.27 E-value=1.2e-06 Score=78.51 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=30.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
+++|+++.|.||+|||||||+..++.. .....+.+.|.+.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDA 97 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEC
Confidence 689999999999999999998888752 2233455655443
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.26 E-value=5.3e-07 Score=73.31 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=30.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcc---cC------CceeEEEecccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALA---IP------SSIDLLYCEQEV 120 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~---~p------~~g~i~~~~~~i 120 (262)
+++|+|+||||||||++.++|.... .| ..|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999985332 12 367788887664
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.25 E-value=5e-07 Score=74.79 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.+|++++|+||||||||||+++|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999999983
No 178
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.22 E-value=1.1e-06 Score=77.99 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=32.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccccC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 123 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~~~ 123 (262)
++||+||||||||||+++|++..-..|..|.|.+.+.+-...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 899999999999999999998321236778887777765443
No 179
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.20 E-value=8.8e-07 Score=80.59 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=34.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCC----------cccCCceeEEEec
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRA----------LAIPSSIDLLYCE 117 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~----------~~~p~~g~i~~~~ 117 (262)
+..|.++||||+||+|||||+++|+|.. ...|+.|.|.+.+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 5789999999999999999999999942 2358889988876
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.20 E-value=8.6e-07 Score=72.30 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=29.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcc---cCC------ceeEEEecccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALA---IPS------SIDLLYCEQEV 120 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~---~p~------~g~i~~~~~~i 120 (262)
.++|+|+||||||||++.|+|..+. .|+ .|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 5899999999999999999995321 232 46788887654
No 181
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.18 E-value=1.7e-08 Score=89.87 Aligned_cols=31 Identities=39% Similarity=0.518 Sum_probs=26.5
Q ss_pred CeeEEEeCC-------cEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASG-------RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~G-------e~~~LvGpNGsGKSTLlk~i~g 102 (262)
++++.+..| +.++|+||||+|||||+++|++
T Consensus 36 ~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 36 KLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp HHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 445556665 8899999999999999999998
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.16 E-value=4.3e-07 Score=86.17 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=35.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce-eEE-Eecccc
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI-DLL-YCEQEV 120 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g-~i~-~~~~~i 120 (262)
.+.+|++++|+|+||||||||+++|++ ...|..| .|. +++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~--~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAA--RLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHH--HHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHH--hhcccCCceEEEECCcHH
Confidence 467999999999999999999999998 4566665 675 666544
No 183
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.15 E-value=1.1e-06 Score=74.72 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=40.0
Q ss_pred EeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 62 VENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 62 i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
++++.+.|.. ++++++++| ++|+||||||||||+++|++. . ..+.|.+++.++
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~--~--~~~~i~~~~~~~ 85 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH--h--CCCEEEeeHHHH
Confidence 4555555533 567778888 999999999999999999983 2 267788877665
No 184
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.15 E-value=3e-06 Score=66.59 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=24.3
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345555554 899999999999999999973
No 185
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.14 E-value=6.4e-07 Score=88.29 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEeEecCCCC-CCC
Q psy2689 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTN-HLD 262 (262)
Q Consensus 226 ~~~~~LSgGerqRv~LArAL~~~P~lLlLDEPT~-~LD 262 (262)
..+..+|+|+.+|..++++++.++++||+|||.. +||
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA 223 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccc
Confidence 3466789999999999999999999999999985 543
No 186
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.14 E-value=7.6e-06 Score=75.30 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=34.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
++.+++++||+||||||++..|+. ...+..++|.+.+.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEecCc
Confidence 588999999999999999999997 4456677888877765
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.13 E-value=1.3e-06 Score=75.38 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=40.8
Q ss_pred EeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 62 VENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 62 i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
++++.+.|.. +++|++++| ++|+||||||||||+++|++. . ..+.|.+++.++
T Consensus 52 l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~--~--~~~~i~~~~~~~ 109 (278)
T 1iy2_A 52 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH--c--CCCEEEecHHHH
Confidence 4455555543 678888889 999999999999999999983 2 267788877665
No 188
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.12 E-value=1.1e-06 Score=69.96 Aligned_cols=24 Identities=46% Similarity=0.649 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.|.+++|+||||||||||+++|++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999999998
No 189
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.11 E-value=5.5e-07 Score=81.56 Aligned_cols=36 Identities=8% Similarity=-0.067 Sum_probs=30.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEeE-ecCCCC
Q psy2689 224 QEKSTKEFSGGWRMRVSLARALFLEPTLLL-LDEPTN 259 (262)
Q Consensus 224 ~~~~~~~LSgGerqRv~LArAL~~~P~lLl-LDEPT~ 259 (262)
.+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 276 ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 276 VTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred cChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 345567799999999999988999999998 999974
No 190
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.02 E-value=3.4e-06 Score=74.41 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.+|+++.|.|++|+|||||+..++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999999988874
No 191
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.01 E-value=2.5e-06 Score=76.37 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
.+.+++|+|++|||||||++.|+| ...+..|+|.+.+.++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~--~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK--MLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH--HhhhcCCeEEEEeecCC
Confidence 478999999999999999999998 45667788888776653
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.97 E-value=2.6e-06 Score=70.01 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
++.+|.+++|+|++|||||||+++|++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999999973
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.95 E-value=1.4e-06 Score=77.81 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=34.5
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+.+.+|.+++|+|++|+|||||++.|++ ...+..++|.+.+.+.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~--~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGM--LLIREGLKVAVIAVDP 94 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHH--HHHHTTCCEEEEEECC
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEeecC
Confidence 3457899999999999999999999997 3445566666665544
No 194
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.93 E-value=1.3e-05 Score=71.88 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
..-.++|+|++|+|||||++.|++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999973
No 195
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.92 E-value=1.4e-05 Score=66.02 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=23.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~ 101 (262)
+.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34555555 499999999999999999985
No 196
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=8.8e-06 Score=75.83 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHccCCCEeEecCCC
Q psy2689 233 GGWRMRVSLARALFLEPTLLLLDEPT 258 (262)
Q Consensus 233 gGerqRv~LArAL~~~P~lLlLDEPT 258 (262)
+++++|..+++|....|.+|++||+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechh
Confidence 67888999999999999999999994
No 197
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.87 E-value=7.4e-06 Score=67.96 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhC-CcccCCceeEEE
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATR-ALAIPSSIDLLY 115 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~-~~~~p~~g~i~~ 115 (262)
.+.+++|+||+||||||++++|++. ++..++.|.+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3568999999999999999999973 333555555544
No 198
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.83 E-value=8.6e-06 Score=66.76 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
++||+|||||||||+.++|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999973
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.81 E-value=1.1e-05 Score=64.68 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=29.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce--eEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI--DLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g--~i~~~~~~i 120 (262)
.+|++++|+|++||||||++++|++. ..+ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~--l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY--LVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--Hhh-CCCcEEEECChHH
Confidence 46999999999999999999999972 222 33 455555443
No 200
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.80 E-value=9.6e-06 Score=74.50 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=44.1
Q ss_pred eeeeEeeCC---CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 63 ENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 63 ~~v~~~~~~---~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
+++++.|+. +++|+ +|++++++|+|||||||++..|++ ...+..++|.+.+.|+.
T Consensus 80 ~~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 80 EALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECCSS
T ss_pred HHHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeecccc
Confidence 445555553 56666 899999999999999999999998 55677889999887763
No 201
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.80 E-value=1e-05 Score=65.34 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=25.7
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++|++..+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4677788999999999999999999999986
No 202
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.76 E-value=1.2e-05 Score=65.76 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.74 E-value=1.9e-05 Score=66.35 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEe
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 116 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~ 116 (262)
+..|.+++|.|++||||||+++.|+. ...+ .+.+...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~--~l~~-~~~~~~~ 59 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYH--RLVK-DYDVIMT 59 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHH--HHTT-TSCEEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH--HHhc-CCCceee
Confidence 34899999999999999999999997 2333 5566544
No 204
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.73 E-value=6.2e-06 Score=74.64 Aligned_cols=31 Identities=39% Similarity=0.549 Sum_probs=28.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|+.+.+.+|++++|+||+|||||||+++|++
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 4678899999999999999999999999987
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.73 E-value=7.2e-05 Score=66.67 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=24.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+++.|.||+|+|||||+..++.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999999986
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.71 E-value=7.2e-06 Score=71.86 Aligned_cols=56 Identities=21% Similarity=0.089 Sum_probs=43.1
Q ss_pred eeeeEeeCC---C-eeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccccc
Q psy2689 63 ENFSLSPCL---K-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121 (262)
Q Consensus 63 ~~v~~~~~~---~-isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i~ 121 (262)
++++..|++ + ++|+.. |++++++|+||+||||++..|++ ...+..++|.+.+.++.
T Consensus 78 ~~l~~~~~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 78 DELSNLFGGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHTTCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCS
T ss_pred HHHHHHhccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 344444543 4 666665 99999999999999999999997 45566788999887764
No 207
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.70 E-value=1.6e-05 Score=65.30 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=24.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+|.+++|+||+|||||||.+.|+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999999986
No 208
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.70 E-value=8.7e-06 Score=67.23 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=32.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCce--eEEEecccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI--DLLYCEQEV 120 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g--~i~~~~~~i 120 (262)
+.+|.+++|+|++||||||+.+.|++ ...|..| .+.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~--~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH--QLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH--HHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH--HhccccCCcEEEECChHH
Confidence 47899999999999999999999997 3334556 666665443
No 209
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.69 E-value=1.9e-05 Score=62.88 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.+|..++|+|++|+|||||++.|++.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999999985
No 210
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.66 E-value=3.6e-05 Score=70.82 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=32.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCc----------ccCCceeEEEecccccc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRAL----------AIPSSIDLLYCEQEVEA 122 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~----------~~p~~g~i~~~~~~i~~ 122 (262)
-.++|||+||+|||||++.|+|... ..+..|.+.++|+++..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l 232 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 232 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEE
Confidence 3799999999999999999998532 12567888888876643
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.64 E-value=2.4e-05 Score=70.26 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
+++|+++.|.||+|||||||+..++. ...+..|.|.|.+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDA 97 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEES
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEec
Confidence 68999999999999999999999997 33455677766443
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.62 E-value=2.6e-05 Score=62.84 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=28.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEE
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 115 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~ 115 (262)
..+|.+++|+|++||||||+.+.|+. ...+..+.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~--~l~~~~~~~~~ 46 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD--LLQKEGYRVEV 46 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEE
Confidence 35799999999999999999999997 23344555543
No 213
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.61 E-value=0.00016 Score=63.78 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=24.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+++.|.||+|+|||||+..++.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 78999999999999999999999886
No 214
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.59 E-value=6.8e-05 Score=64.78 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHccCCCEeEecCCCCC
Q psy2689 232 SGGWRMRVSLARALFLEPTLLLLDEPTNH 260 (262)
Q Consensus 232 SgGerqRv~LArAL~~~P~lLlLDEPT~~ 260 (262)
+++++.|..+++|...+|.+|++||+.+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 46777888888888889999999998653
No 215
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.57 E-value=2.4e-05 Score=68.52 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
++.+++|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999854
No 216
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.57 E-value=0.00048 Score=61.23 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCc--EEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGR--RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge--~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+. .+.|.||+|+|||||++.+++
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 446 899999999999999999997
No 217
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.56 E-value=3.9e-05 Score=60.31 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|++|+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 218
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.56 E-value=1.6e-05 Score=74.74 Aligned_cols=40 Identities=15% Similarity=0.443 Sum_probs=32.4
Q ss_pred EEEeeeeEeeCCCeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 60 IKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 60 i~i~~v~~~~~~~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.++|+.. -.+++|++.+| +.+|+|+||||||||+.+|..
T Consensus 43 L~i~nf~~--~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 43 LEIRNLAT--ITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp EEEESBTT--BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred eecccccc--eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 55666531 13788899999 999999999999999999964
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=3.6e-05 Score=72.90 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=34.3
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEec
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 117 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~ 117 (262)
++++++ +|+.++|+||||+|||||+++|++ ...++.|.|.+.+
T Consensus 101 ~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 101 KLTKSL-KGPILCLAGPPGVGKTSLAKSIAK--SLGRKFVRISLGG 143 (543)
T ss_dssp HHSSSC-CSCEEEEESSSSSSHHHHHHHHHH--HHTCEEEEECCCC
T ss_pred HhcccC-CCCEEEEECCCCCCHHHHHHHHHH--hcCCCeEEEEecc
Confidence 445555 899999999999999999999998 4456667776655
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=4.6e-05 Score=61.08 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999984
No 221
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=4.5e-05 Score=71.46 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=33.9
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
++++.+++| +.|+||||+|||||+++|++. . ..+.+.+++.++
T Consensus 58 ~lg~~ip~G--vLL~GppGtGKTtLaraIa~~-~---~~~~i~i~g~~~ 100 (499)
T 2dhr_A 58 EMGARIPKG--VLLVGPPGVGKTHLARAVAGE-A---RVPFITASGSDF 100 (499)
T ss_dssp TTSCCCCSE--EEEECSSSSSHHHHHHHHHHH-T---TCCEEEEEGGGG
T ss_pred hccCCCCce--EEEECCCCCCHHHHHHHHHHH-h---CCCEEEEehhHH
Confidence 667788888 999999999999999999983 1 245566666554
No 222
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.51 E-value=4.6e-05 Score=69.25 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=31.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCc---------ccCCceeEEEec
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRAL---------AIPSSIDLLYCE 117 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~---------~~p~~g~i~~~~ 117 (262)
+..|..++|||+||+|||||++.|+|... ..|..|.|.+.+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 46788999999999999999999998522 346667776654
No 223
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.50 E-value=4e-05 Score=68.60 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCcccCCceeE
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 113 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i 113 (262)
.++|||++|||||||++.|+|..+.++..|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 89999999999999999999955544555544
No 224
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.49 E-value=4.3e-05 Score=62.35 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+++|+|++||||||+.+.|++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.49 E-value=0.00012 Score=65.92 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=24.2
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHH
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~ 101 (262)
+..+++.+ .+.+|+|||||||||+|-.|.
T Consensus 18 ~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 45556666 599999999999999999986
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.47 E-value=6.4e-05 Score=63.06 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+|.+++|+|++||||||+.++|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999999996
No 227
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.45 E-value=4.8e-05 Score=73.75 Aligned_cols=29 Identities=38% Similarity=0.368 Sum_probs=24.8
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++.+.+|..++|+|++|+|||||++.|++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHH
Confidence 34578899999999999999999999996
No 228
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=7.3e-05 Score=59.58 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 229
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.40 E-value=7.6e-05 Score=59.74 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999983
No 230
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.36 E-value=0.0001 Score=58.01 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+|++||||||+.+.|+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.33 E-value=0.00012 Score=59.02 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+++|+|++|||||||++.|.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999997
No 232
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.29 E-value=4.5e-05 Score=68.54 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.4
Q ss_pred EEEeeeeEeeCC-----CeeEEEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 60 IKVENFSLSPCL-----KVQKQIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 60 i~i~~v~~~~~~-----~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+.+.+++..++. +++|+| +|+|++|+|||||++.|.+.
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred EEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 666777766654 566655 99999999999999999874
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00016 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999996
No 234
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.24 E-value=0.00018 Score=57.56 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999985
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.24 E-value=0.00016 Score=56.60 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy2689 82 RYGLVGPNGHGKTTLLRHIA 101 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~ 101 (262)
+++|+||+||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999993
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.23 E-value=0.00019 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+-+++|+|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 237
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.21 E-value=0.00074 Score=62.11 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=31.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEeccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~ 119 (262)
+.+|+++.|.|++|+|||||+..++.. ........|.|..-+
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~-~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQN-AALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHH-HHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH-HHHhCCCeEEEEECC
Confidence 789999999999999999999888852 222223356665554
No 238
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.21 E-value=0.00019 Score=60.15 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999853
No 239
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.20 E-value=0.00019 Score=60.65 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.-+++|+||+||||||+.++|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 240
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.20 E-value=6.2e-05 Score=67.37 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.3
Q ss_pred EEeCCcE--EEEECCCCCcHHHHHHHHHh
Q psy2689 76 QIASGRR--YGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 76 ~i~~Ge~--~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.+|++ ++|+|++||||||+.++|++
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3567887 99999999999999999997
No 241
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.18 E-value=0.00021 Score=57.76 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999997
No 242
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.18 E-value=0.00019 Score=57.78 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 73 isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+++..+.. .++|+|++|+|||||++.+.+.
T Consensus 17 ~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 17 LGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred hhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 33344444 7899999999999999999984
No 243
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00015 Score=61.30 Aligned_cols=20 Identities=50% Similarity=0.688 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy2689 83 YGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 83 ~~LvGpNGsGKSTLlk~i~g 102 (262)
+.|+||+|+|||||+++|++
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 88999999999999999997
No 244
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.17 E-value=0.00019 Score=57.59 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999985
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.00041 Score=68.67 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=32.6
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 74 sl~i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+|.+.+|+.+.|+||+|||||||+++|++. +. .--+.+++.++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~-l~---~~~i~v~~~~l 274 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANE-TG---AFFFLINGPEI 274 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHT-TT---CEEEEEEHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHH-cC---CcEEEEEchHh
Confidence 346889999999999999999999999984 21 11255555544
No 246
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00023 Score=60.60 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+||+|||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999986
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.14 E-value=0.0002 Score=56.92 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
++.|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 248
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00016 Score=64.01 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.5
Q ss_pred EEeCCcE--EEEECCCCCcHHHHHHHHHh
Q psy2689 76 QIASGRR--YGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 76 ~i~~Ge~--~~LvGpNGsGKSTLlk~i~g 102 (262)
.+..|++ +.|.||+|+||||+++++++
T Consensus 40 ~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 40 FVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4677877 99999999999999999998
No 249
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.13 E-value=0.00021 Score=61.21 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|++|||||||++.|+|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.12 E-value=0.00024 Score=57.81 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy2689 83 YGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 83 ~~LvGpNGsGKSTLlk~i~g 102 (262)
+.|+||+|||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.00016 Score=61.41 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=29.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
..+.++.|+|++||||||+.+.|+.. +. .+.+.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~-l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE-FQ---GNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH-TT---TCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh-cC---CCcEEEecHHH
Confidence 56889999999999999999999972 21 23455665544
No 252
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00029 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999999985
No 253
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.09 E-value=0.00061 Score=54.49 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc---ccCCce----eEEEecccc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL---AIPSSI----DLLYCEQEV 120 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~---~~p~~g----~i~~~~~~i 120 (262)
.++|+|++|+|||||++.+.+..+ +.|+.+ .+.+++..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 589999999999999987776433 346655 455555443
No 254
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.09 E-value=0.00033 Score=56.75 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999997
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.08 E-value=0.00031 Score=55.58 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 256
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.07 E-value=0.00028 Score=56.24 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00032 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+++|+|++||||||+.+.|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999996
No 258
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.02 E-value=0.00033 Score=63.23 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEe
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 116 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~ 116 (262)
.+..++|+||+|||||||++.|+.. ..+..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~--~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR--EYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH--HHHCCCEEEEE
Confidence 5678999999999999999999873 23444555443
No 259
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.02 E-value=0.00014 Score=59.51 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+|++||||||+++.|+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00036 Score=56.06 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999985
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.02 E-value=0.0034 Score=57.77 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
++.+++++|++|+||||++..|+. .......+|.+...|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~--~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR--YFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 468999999999999999999986 2333344666655554
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.02 E-value=0.0004 Score=56.41 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 263
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.00 E-value=0.00042 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 264
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.98 E-value=0.00041 Score=56.51 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..|.+++|.|+.||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 265
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.97 E-value=0.00072 Score=60.72 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=28.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCCc---------ccCCceeEEEec
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRAL---------AIPSSIDLLYCE 117 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~~---------~~p~~g~i~~~~ 117 (262)
|-.++|||.+|+|||||++.|++... ..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45789999999999999999998431 235667666654
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.95 E-value=0.00043 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+|-+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999985
No 267
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.95 E-value=0.00049 Score=55.15 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+++|+|++|||||||+..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.94 E-value=0.0004 Score=60.27 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+..+.|+||+||||||+.+.|+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999985
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0005 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.-.++|+|+.|+|||||++.+.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999985
No 270
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.93 E-value=0.00048 Score=55.85 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|.|++||||||+.++|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 271
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.92 E-value=0.0005 Score=55.26 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 272
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.91 E-value=0.00049 Score=59.30 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|++|||||||++.++|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 273
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.91 E-value=0.00035 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..|+.+.++||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 46799999999999999999887763
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.90 E-value=0.00047 Score=55.04 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
++.|.|+.||||||+.+.|+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 275
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.86 E-value=0.00058 Score=59.39 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=24.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.++..+.|.||+|+|||||+++|++
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHH
Confidence 46788999999999999999999997
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.84 E-value=0.00061 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.+++|+|+.||||||+.+.|+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999985
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.83 E-value=0.00068 Score=52.44 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999853
No 278
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.83 E-value=0.00064 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
No 279
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.82 E-value=0.00075 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 280
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.82 E-value=0.00046 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++.++.|.|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.82 E-value=0.00074 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999854
No 282
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.81 E-value=0.0011 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999853
No 283
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.81 E-value=0.00068 Score=55.56 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 284
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.81 E-value=0.00077 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999854
No 285
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.80 E-value=0.00079 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|-++.|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 286
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.80 E-value=0.00074 Score=52.68 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999853
No 287
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.0008 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999843
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.00068 Score=56.24 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.79 E-value=0.0008 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 290
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.77 E-value=0.00081 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999863
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.76 E-value=0.0008 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 292
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.76 E-value=0.00058 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999999874
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.76 E-value=0.00057 Score=54.40 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHhC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999974
No 294
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.75 E-value=0.0008 Score=55.19 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999975
No 295
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.75 E-value=0.00088 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 296
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.75 E-value=0.00088 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 297
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.75 E-value=0.00082 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|||++|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999853
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.74 E-value=0.00089 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 299
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.74 E-value=0.00072 Score=53.21 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 300
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.73 E-value=0.0009 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 301
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.73 E-value=0.00095 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
=++++|+|+.||||||+.+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.72 E-value=0.001 Score=53.97 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+-+++|+|+.||||||+.+.|+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 303
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.72 E-value=0.00094 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.71 E-value=0.00097 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
No 305
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.70 E-value=0.00079 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.70 E-value=0.0012 Score=51.78 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.+.-.++|+|+.|+|||||++.+.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345679999999999999999998743
No 307
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.70 E-value=0.00057 Score=55.35 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=29.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcc------cCCceeEEEeccccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA------IPSSIDLLYCEQEVE 121 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~------~p~~g~i~~~~~~i~ 121 (262)
.+++ .++|+|++|+|||||++.+.+..+. .+..+.+.+++..+.
T Consensus 23 ~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 23 KKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp TCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 3444 5899999999999999999874321 123456666664443
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.69 E-value=0.00096 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
...+++|+|+.||||||+.+.|+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 309
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.69 E-value=0.00084 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+++|+|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 310
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.69 E-value=0.00088 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999999854
No 311
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.68 E-value=0.00081 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 312
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.68 E-value=0.0012 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999853
No 313
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.67 E-value=0.00084 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
No 314
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.67 E-value=0.00078 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999985
No 315
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.67 E-value=0.00093 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999853
No 316
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.67 E-value=0.001 Score=57.41 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEE
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 115 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~ 115 (262)
...+.|+||+|+||||++++|++ ...+..+.+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~ 80 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIR 80 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEE
Confidence 45799999999999999999997 33344444433
No 317
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.67 E-value=0.001 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..-++||+|+.||||||+.++|+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999985
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.67 E-value=0.00082 Score=53.63 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 319
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.64 E-value=0.0011 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
No 321
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.64 E-value=0.0011 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 322
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.64 E-value=0.0011 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999984
No 323
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.63 E-value=0.0012 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.=.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 324
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.62 E-value=0.0012 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999853
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.62 E-value=0.0011 Score=56.00 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
-+++|.|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.0012 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999999985
No 327
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.61 E-value=0.0013 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 328
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.61 E-value=0.0012 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 329
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.60 E-value=0.00097 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999853
No 330
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.60 E-value=0.001 Score=59.87 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.+||||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999984
No 331
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.60 E-value=0.0012 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 332
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.59 E-value=0.0015 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 333
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.59 E-value=0.0018 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.+.+..+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998543
No 334
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.00061 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.-.++|+|++|+|||||++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999863
No 335
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0014 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+..+.|.||+|+|||||++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999986
No 336
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.58 E-value=0.0011 Score=56.49 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|||||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 337
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.57 E-value=0.0014 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999999754
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0014 Score=51.47 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.+.+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998543
No 339
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0013 Score=54.52 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 340
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.56 E-value=0.0014 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 341
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.56 E-value=0.0014 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 342
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.55 E-value=0.0016 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
=.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999743
No 343
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.55 E-value=0.0015 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 344
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.53 E-value=0.0016 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999853
No 345
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0011 Score=58.65 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+..+.|.||+|+|||||++.+++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999997
No 346
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.52 E-value=0.0014 Score=57.25 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
+++|+|++|+|||||++.|.|..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCce
Confidence 699999999999999999998543
No 347
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.52 E-value=0.0017 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 348
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.52 E-value=0.0015 Score=53.35 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 349
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.51 E-value=0.0016 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999853
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.51 E-value=0.0016 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++-+++|+||.||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999984
No 351
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.50 E-value=0.0013 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.-+++|+|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 352
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.50 E-value=0.0019 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.+.+..+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998543
No 353
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.50 E-value=0.0028 Score=58.34 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=31.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
+.+|+.+.|.|+.|+|||||+--++.. .... ...|.|..-+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~-~a~~-g~~vl~fSlEm 235 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKN-MSDN-DDVVNLHSLEM 235 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHH-HHHT-TCEEEEECSSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHH-HHHc-CCEEEEEECCC
Confidence 789999999999999999998877752 2122 34677766554
No 354
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999853
No 355
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.48 E-value=0.0016 Score=55.47 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|||||||++.++|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 356
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.48 E-value=0.0018 Score=59.94 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=25.6
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.+-+|++.+|+||+|+|||||++.|+.
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 3567999999999999999999999986
No 357
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.47 E-value=0.0015 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999643
No 358
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.46 E-value=0.0017 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 359
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.45 E-value=0.0011 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++|+|++|+|||||++.+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 360
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.45 E-value=0.0021 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.=.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3468999999999999999999854
No 361
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.45 E-value=0.0017 Score=52.22 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 362
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.43 E-value=0.0016 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-.++|+|+.|+|||||++.|.+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999843
No 363
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0016 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 364
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.42 E-value=0.0016 Score=53.50 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 365
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.42 E-value=0.0017 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
+.=.++|+|+.|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999743
No 366
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0017 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999843
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.41 E-value=0.00086 Score=58.28 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++-++||.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 368
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.41 E-value=0.0016 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|||||||++.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 369
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.41 E-value=0.0018 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-+++|+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999854
No 370
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.40 E-value=0.0019 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999853
No 371
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.38 E-value=0.0014 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|++|+|||||++.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988743
No 372
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.38 E-value=0.002 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 373
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.38 E-value=0.0021 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 374
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.38 E-value=0.0021 Score=51.93 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.|.||+|+|||||++.|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999997
No 375
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0022 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.=.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999999853
No 376
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0018 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999999974
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.36 E-value=0.0019 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|-++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999985
No 378
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.0018 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 379
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.35 E-value=0.0023 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999998754
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.34 E-value=0.0019 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
-+++|+|+.|+|||||++.|++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 381
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.34 E-value=0.0022 Score=51.10 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
=.++|+|+.|+|||||++.+.+..+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3589999999999999999997543
No 382
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0023 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999853
No 383
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.33 E-value=0.0027 Score=51.71 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.+.+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998543
No 384
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.31 E-value=0.0027 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999986
No 385
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0021 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHhC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
=.++|+|+.|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999964
No 386
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.0023 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-=.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999999854
No 387
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0024 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 388
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.30 E-value=0.0025 Score=52.79 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|-++.|.|+.||||||+++.|+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999975
No 389
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.30 E-value=0.0018 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.+.+..+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998543
No 390
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0019 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 391
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.29 E-value=0.002 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
..-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999853
No 392
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.29 E-value=0.0035 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 393
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.29 E-value=0.0021 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 394
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.0024 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
..=.++|+|+.|+|||||++.+.+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999999753
No 395
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.28 E-value=0.0022 Score=53.00 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
-.++|+|+.|+|||||++.+.+..+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~ 54 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANV 54 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999998543
No 396
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.28 E-value=0.00099 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.-.++|+|+.|+|||||++.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999853
No 397
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.28 E-value=0.0021 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.27 E-value=0.0023 Score=56.87 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+++|+||+|||||||.+.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3799999999999999999986
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.26 E-value=0.0028 Score=52.78 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.++.|+|+.||||||+.+.|+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 400
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.26 E-value=0.0015 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.=.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 401
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.26 E-value=0.0024 Score=55.03 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 402
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.25 E-value=0.002 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
=.++|+|+.|+|||||++.+.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999753
No 403
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.23 E-value=0.002 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=20.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+|-++.|.|+.||||||+++.|+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999999985
No 404
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.23 E-value=0.0027 Score=50.95 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
+.=.++|+|+.|+|||||++.+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998743
No 405
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.22 E-value=0.0028 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999753
No 406
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.21 E-value=0.0023 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999854
No 407
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.20 E-value=0.0025 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHhC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
=.++|+|+.|+|||||++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999884
No 408
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.003 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 409
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.16 E-value=0.0043 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
=.++|+|+.|+|||||++.+.+..+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3589999999999999999987543
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.16 E-value=0.0026 Score=51.92 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999743
No 411
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.16 E-value=0.0031 Score=53.81 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+..+.|.||.|+|||||++.|+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4567799999999999999999997
No 412
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.16 E-value=0.0029 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
-+|.++.|.|++||||||+++.|+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999999975
No 413
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.15 E-value=0.0027 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 414
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.14 E-value=0.0028 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999853
No 415
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.12 E-value=0.0019 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 416
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.11 E-value=0.0033 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|-++.|-|+.||||||+++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999985
No 417
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.10 E-value=0.003 Score=53.68 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.|.+..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
No 418
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.10 E-value=0.0032 Score=55.54 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.|+||+|||||||.+.|+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999996
No 419
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.10 E-value=0.0048 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
..|..+.|+||+|+|||||...|+..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999864
No 420
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.09 E-value=0.0027 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..+.|.||+|+|||||++.|++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999997
No 421
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.08 E-value=0.0033 Score=50.96 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.=.++|+|+.|+|||||++.+.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998743
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.08 E-value=0.0037 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.+++|+||+|||||||...|+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45789999999999999999986
No 423
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.07 E-value=0.0031 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHhC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
-.++++|.+|+|||||++.|.|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 48999999999999999999984
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.07 E-value=0.0036 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.++.|+||+|||||||...|+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999996
No 425
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0037 Score=51.53 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|||++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999863
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0034 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.+++|.|+.||||||+.+.|+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 66899999999999999999986
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.05 E-value=0.0033 Score=57.30 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
-....++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999985
No 428
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.04 E-value=0.004 Score=50.68 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.|.||.|+|||||++.++.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999986
No 429
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.04 E-value=0.0027 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.=.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 430
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.04 E-value=0.003 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.|.|..+
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999998543
No 431
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.02 E-value=0.0011 Score=65.58 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.2
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 73 isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++.+.++..+.|+||+|+|||||.++|++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 356678999999999999999999999997
No 432
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.02 E-value=0.0033 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++++|+.|+|||||++.|.+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.00 E-value=0.0034 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 355678999999999999999986
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.00 E-value=0.0035 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
-+++|+|+.|+|||||++-++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.00 E-value=0.0043 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+|-++.|.|+.||||||+.+.|+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999985
No 436
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0039 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 437
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.97 E-value=0.0038 Score=50.43 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
No 438
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.96 E-value=0.003 Score=58.22 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHhC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
-+++|||++|+|||||++.|+|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999984
No 439
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.95 E-value=0.0042 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+|.++.|.|+.||||||+++.|..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999999986
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0046 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 441
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.0045 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+++|+++.|.||+|+|||||+..++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999988874
No 442
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.93 E-value=0.0017 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 443
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.90 E-value=0.0043 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.+..++.|+||.||||+|..+.|+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999985
No 444
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.88 E-value=0.0038 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..+.|.||+|+|||||+++|++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999997
No 445
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.87 E-value=0.0053 Score=51.42 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
...-+.|.||.|+|||||++.|+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445588999999999999999987
No 446
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.85 E-value=0.0077 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.|.-+.|+|++|+||||+...+.+.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 78899999999999999999888743
No 447
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.84 E-value=0.0019 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.81 E-value=0.003 Score=53.54 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++-+++|.|+.||||||+.+.|+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999985
No 449
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.80 E-value=0.0027 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHhC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
=.++|+|+.|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.78 E-value=0.0055 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..++.|+||+|||||||...|+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 45789999999999999999985
No 451
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.74 E-value=0.0017 Score=59.59 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=28.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecccc
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~~i 120 (262)
.+++|+|++|+||||++..|++. ......+|.+...+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~--l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY--IQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH--HHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeccc
Confidence 58999999999999999999972 222234566655543
No 452
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.0053 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.|.||+|+||||+++++++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999987
No 453
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.71 E-value=0.0066 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.+++|=|+-||||||+++.|+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 56899999999999999999986
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.68 E-value=0.0066 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
++.|+||.||||+|..+.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.65 E-value=0.0088 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHH
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIA 101 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~ 101 (262)
+++|+++.|.|+.|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 5899999999999999999976554
No 456
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.62 E-value=0.0084 Score=53.57 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=29.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhCCcccCCceeEEEecc
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~~~~~p~~g~i~~~~~ 118 (262)
+++|+++.|.||+|+|||||...++.. .. ...+.+.|...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~-~~-~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA-AQ-REGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH-HH-HTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH-HH-HCCCeEEEEeC
Confidence 689999999999999999999888752 12 22345555443
No 457
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.61 E-value=0.0073 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..-++||+|+.||||||+.+.|+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 458
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.54 E-value=0.0064 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|||+.++|||||++.|++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 459
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.52 E-value=0.0076 Score=54.56 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 75 KQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 75 l~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.|-+|++.+|+|+.|+|||||+..|+.
T Consensus 170 ~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 170 APIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp SCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred ccccCCceEEEecCCCCChhHHHHHHHH
Confidence 4688999999999999999999998886
No 460
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.49 E-value=0.0084 Score=48.28 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHH
Q psy2689 79 SGRRYGLVGPNGHGKTTLL-RHIA 101 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLl-k~i~ 101 (262)
+|.++.+.||.|+||||++ +++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999997 5553
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.47 E-value=0.011 Score=47.45 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-.|.-+.|.|++|+|||||.-.+...+
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 478889999999999999988876543
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.0081 Score=48.25 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.|.||.|+|||||++.++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999986
No 463
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.45 E-value=0.0076 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+-.++|+|.+|+|||||+|.|.|.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CceEEEEecCCCchHHHHHHHhcC
Confidence 347999999999999999999984
No 464
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.45 E-value=0.0084 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..-+++|+|+.|+|||||++.|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999985
No 465
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.43 E-value=0.0055 Score=50.05 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHH-HHh
Q psy2689 82 RYGLVGPNGHGKTTLLRH-IAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~-i~g 102 (262)
.++|+|+.|+|||||++. +.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 489999999999999998 544
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.39 E-value=0.0087 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.-+-|.||.|+|||++.+.|..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 455688999999999999999986
No 467
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.37 E-value=0.0069 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3566799999999999999999986
No 468
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.36 E-value=0.0041 Score=52.53 Aligned_cols=20 Identities=50% Similarity=0.693 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy2689 83 YGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 83 ~~LvGpNGsGKSTLlk~i~g 102 (262)
+.|.||+|+|||||++.|+.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 77999999999999999987
No 469
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.34 E-value=0.0071 Score=55.32 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|||+.|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 470
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.29 E-value=0.0097 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+-.++|+|+.|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998874
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.28 E-value=0.0094 Score=54.13 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+++|+||+|||||||...|+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 3689999999999999999985
No 472
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.22 E-value=0.0085 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCc
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRAL 105 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~~ 105 (262)
.++|+|+.|+|||||++.|.|..+
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999998543
No 473
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.21 E-value=0.0033 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.=.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999998864
No 474
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.20 E-value=0.011 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+..+.|.||.|+|||||.+.++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998876
No 475
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.19 E-value=0.01 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.+..++++|++|+|||||+|.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999983
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.08 E-value=0.013 Score=51.29 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..-+.|.||.|+|||||++.++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 456688999999999999999997
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.04 E-value=0.015 Score=51.36 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 76 QIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 76 ~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
-+.+|..+.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467888899999999999999999884
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.02 E-value=0.012 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
++..+.|.||+|+||||+.+.|+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999999996
No 479
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.01 E-value=0.002 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
.++|+|+.|+|||||++.+.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 480
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.99 E-value=0.014 Score=49.55 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
....+-|.||.|+|||||.+.|+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 445688999999999999999986
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.97 E-value=0.016 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+.-+.|.||.|+|||+|+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999986
No 482
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.89 E-value=0.012 Score=54.39 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=27.3
Q ss_pred CeeEEEeCCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 72 ~isl~i~~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
|.=+.+-+|++.+|+|+.|+|||||+..|+.
T Consensus 145 D~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~ 175 (482)
T 2ck3_D 145 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 175 (482)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ecccccccCCeeeeecCCCCChHHHHHHHHH
Confidence 3445789999999999999999999998875
No 483
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.89 E-value=0.014 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..+.|.||.|+|||||++.|+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999986
No 484
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.87 E-value=0.015 Score=52.54 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.++++|+.|+|||||++.|++
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999997
No 485
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.86 E-value=0.014 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
..|=.++|+|+.|+|||||++.|++.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999984
No 486
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.85 E-value=0.012 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
++..++++|.+|+|||||+|.|.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5778999999999999999999983
No 487
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.82 E-value=0.013 Score=55.40 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
-+++|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 469999999999999999999854
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.81 E-value=0.016 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.|.||.|+|||+|.+.|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4577889999999999999996
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.80 E-value=0.016 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|..+.|.||.|+|||||++.++.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999996
No 490
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.80 E-value=0.018 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
.|..+.|.||.|+|||||++.++.
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHH
Confidence 468999999999999999999986
No 491
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.016 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHh
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..+.|.||.|+|||||++.++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999999986
No 492
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.76 E-value=0.019 Score=51.00 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
....+.|.||.|+|||||++.|+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999987
No 493
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.69 E-value=0.02 Score=49.96 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+..-+.|.||.|+|||||++.|+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345689999999999999999986
No 494
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.65 E-value=0.017 Score=53.14 Aligned_cols=21 Identities=52% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q psy2689 82 RYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g 102 (262)
.+.|.||+|+|||||+++|+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999997
No 495
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.65 E-value=0.019 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q psy2689 82 RYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 82 ~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
.++|+|+.|+|||||++.+.|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 496
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.64 E-value=0.017 Score=51.34 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=22.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHhC
Q psy2689 77 IASGRRYGLVGPNGHGKTTLLRHIATR 103 (262)
Q Consensus 77 i~~Ge~~~LvGpNGsGKSTLlk~i~g~ 103 (262)
+.---.++|||..++|||||++.|++.
T Consensus 155 Lk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 155 LKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 333335899999999999999999873
No 497
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.64 E-value=0.025 Score=54.98 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 78 ASGRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 78 ~~Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
..+=.++|+|+.|+|||||++.|.|..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356679999999999999999999854
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.62 E-value=0.014 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHhCC
Q psy2689 80 GRRYGLVGPNGHGKTTLLRHIATRA 104 (262)
Q Consensus 80 Ge~~~LvGpNGsGKSTLlk~i~g~~ 104 (262)
--+++|+|+.|+|||||+|.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3568999999999999999999853
No 499
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.62 E-value=0.02 Score=54.95 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHh
Q psy2689 79 SGRRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 79 ~Ge~~~LvGpNGsGKSTLlk~i~g 102 (262)
+|.++.|+|.+||||||+.+.|+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 577899999999999999999985
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.58 E-value=0.019 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHh
Q psy2689 81 RRYGLVGPNGHGKTTLLRHIAT 102 (262)
Q Consensus 81 e~~~LvGpNGsGKSTLlk~i~g 102 (262)
..+.|.||.|+|||||++.|+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3588999999999999999986
Done!