RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2689
(262 letters)
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 188 bits (478), Expect = 5e-55
Identities = 102/261 (39%), Positives = 144/261 (55%), Gaps = 24/261 (9%)
Query: 8 KEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL 67
K K++ +++ +YQ ++ + + + + + DI +ENFS+
Sbjct: 134 KRKEERQREVQYQAHVAEMEAAKAGMPGVYVNHDGNGGGPAIK--------DIHMENFSI 185
Query: 68 SPC---LKVQKQI--ASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVE 121
S L V + A GR YGLVG NG GKTT LR++A A+ IP + +L+ EQEV
Sbjct: 186 SVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV 245
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLER 181
D +A+ VL+ D R +LL+E ++L + + N+ +++
Sbjct: 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK-------DGVDK 298
Query: 182 DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSL 241
D RL E+Y L+ I+A AE RA ILAGL FT EMQ K+TK FSGGWRMR++L
Sbjct: 299 DAVSQ---RLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIAL 355
Query: 242 ARALFLEPTLLLLDEPTNHLD 262
ARALF+EP LLLLDEPTNHLD
Sbjct: 356 ARALFIEPDLLLLDEPTNHLD 376
Score = 48.7 bits (116), Expect = 1e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 207 EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E + R L G T + + SGG + RV+ A+ F +P +LLLDEP+NHLD
Sbjct: 604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
Score = 29.8 bits (67), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 82 RYGLVGPNGHGKTTLLRHIA 101
R +VGPNG GK+T+L+ I+
Sbjct: 537 RIAMVGPNGIGKSTILKLIS 556
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 141 bits (358), Expect = 6e-39
Identities = 63/213 (29%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 59 DIKVENFSLS---------PCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 109
I +EN SL+ L + G R GLVG NG GK+TLL+ +A
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNP----GERIGLVGRNGAGKSTLLKILAGELEPDSG 58
Query: 110 SIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNR 169
+ + S + ++ + + ++ V+
Sbjct: 59 EVTRPKGLRVGYLSQEPPLD------------------------PEKTVLDYVIEGFGEL 94
Query: 170 VKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTK 229
+LL E + + + L E+ L+ ++ E RA L GLGF E ++
Sbjct: 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVS 152
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGGWR RV+LARAL EP LLLLDEPTNHLD
Sbjct: 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Score = 76.5 bits (189), Expect = 6e-16
Identities = 34/69 (49%), Positives = 38/69 (55%)
Query: 194 VYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
V +EL D E R L GFT E QEK SGG + R+ LA+ L P LLL
Sbjct: 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462
Query: 254 LDEPTNHLD 262
LDEPTNHLD
Sbjct: 463 LDEPTNHLD 471
Score = 35.7 bits (83), Expect = 0.018
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+++ S I G R +VGPNG GK+TLL+ +A
Sbjct: 338 LKDLSFR--------IDRGDRIAIVGPNGAGKSTLLKLLA 369
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 94.9 bits (236), Expect = 4e-22
Identities = 65/192 (33%), Positives = 89/192 (46%), Gaps = 40/192 (20%)
Query: 77 IASGRRYGLVGPNGHGKTTLL----RHIATRA--LAIPSSIDLLYCEQEVEASDDSAVNI 130
I G++ GLVG NG GK+TLL I+ P + L + QE A A+
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEY 83
Query: 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLR 190
V+ D+ + Q+EA A +E D
Sbjct: 84 VIDGDR----------EYRQLEAQLHDA-----------------------NERNDGHAI 110
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT 250
T ++ +L +I+A RA +L GLGF+ E E+ +FSGGWRMR++LA+AL
Sbjct: 111 AT-IHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSD 169
Query: 251 LLLLDEPTNHLD 262
LLLLDEPTNHLD
Sbjct: 170 LLLLDEPTNHLD 181
Score = 54.0 bits (130), Expect = 3e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 198 LKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEP 257
L + E + R L G GF + + T+ FSGG + R+ LA ++ P LLLLDEP
Sbjct: 398 LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457
Query: 258 TNHLD 262
TNHLD
Sbjct: 458 TNHLD 462
Score = 28.2 bits (63), Expect = 5.0
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIA 101
G R GL+G NG GK+TL++ +A
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLA 359
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 78.5 bits (194), Expect = 4e-17
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 45/186 (24%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
+ G +GL+GPNG GKTTLL+ +A L P+S ++L +V K
Sbjct: 28 VEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTSGEILVLGYDV--------------VK 71
Query: 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 196
K+ + + Q + L+ +N ++ L ++E
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPE-----LTVREN-LEFFARLYGLSKEE------------- 112
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
AE R +L G + +K + SGG + R+S+A AL +P LL+LDE
Sbjct: 113 ---------AEERIEELLELFGLEDKANKK-VRTLSGGMKQRLSIALALLHDPELLILDE 162
Query: 257 PTNHLD 262
PT+ LD
Sbjct: 163 PTSGLD 168
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 72.4 bits (178), Expect = 3e-16
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 194 VYDELK-SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
V + L + A+ RA L +G + + SGG + RV++ARAL +P LL
Sbjct: 53 VRENLFFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 253 LLDEPTN 259
LLDEPT
Sbjct: 113 LLDEPTA 119
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 70.6 bits (174), Expect = 2e-15
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG +MR++LA+ L P LLLLDEPTNHLD
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
Score = 51.3 bits (124), Expect = 2e-08
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
I++EN S + LK + I G R GLVG NG GK+TLL+ IA
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIA 47
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 74.5 bits (184), Expect = 3e-15
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 42/193 (21%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN-R 138
G RYGL+G NG GK+T ++ I L PS+ N+ S D N R
Sbjct: 27 GNRYGLIGANGCGKSTFMK-ILGGDLE-PSA-----------------GNV--SLDPNER 65
Query: 139 VKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDE-------SGDNQLRL 191
+ L++ +Q + + ++ V+ +L + K ERD S ++ +++
Sbjct: 66 LGKLRQ----DQFAFEEFTVLDTVIMGHT---ELWE--VKQERDRIYALPEMSEEDGMKV 116
Query: 192 TEVYDELKSIEAD--AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
++ E+K E D AE RA +L G+G +E E + GW++RV LA+ALF P
Sbjct: 117 ADL--EVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP 174
Query: 250 TLLLLDEPTNHLD 262
+LLLDEPTN+LD
Sbjct: 175 DILLLDEPTNNLD 187
Score = 42.6 bits (101), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 211 RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R L L F+++ +KS K SGG + R+ + + +P +L++DEPTNH+D
Sbjct: 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
Score = 32.2 bits (74), Expect = 0.30
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLR 98
+ +G R ++G NG GKTTLLR
Sbjct: 341 LLEAGERLAIIGENGVGKTTLLR 363
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 70.6 bits (174), Expect = 1e-14
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 62/215 (28%)
Query: 61 KVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 113
+++N S S P L + I G +VGPNG GK+TLLR + L P+S ++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN--GLLGPTSGEV 58
Query: 114 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLL 173
L +++ LKE + V +V
Sbjct: 59 LVDGKDLTKLS-----------------LKELRRK----------VGLVF---------- 81
Query: 174 KECSKLERDESGDNQLRLTEVYDELK------SIEADAAEPRARRILAGLGFTKEMQEKS 227
++ D+Q V +E+ + + E R L +G + ++++S
Sbjct: 82 ---------QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-EGLRDRS 131
Query: 228 TKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++A L ++P +LLLDEPT LD
Sbjct: 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 70.0 bits (172), Expect = 3e-14
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 54/193 (27%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+I G R L+GPNG GK+TLL+ + L P+S
Sbjct: 26 EIEKGERVLLIGPNGSGKSTLLKLLN--GLLKPTS------------------------- 58
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
V + + E+ V +V D+QL V
Sbjct: 59 -GEVLVDGLDTSSEKSLLELRQKVGLVFQN-------------------PDDQLFGPTVE 98
Query: 196 DEL------KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
DE+ + + E R L +G E+ ++ SGG + RV++A L + P
Sbjct: 99 DEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGP 157
Query: 250 TLLLLDEPTNHLD 262
+LLLDEPT LD
Sbjct: 158 EILLLDEPTAGLD 170
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 68.4 bits (168), Expect = 3e-13
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
V++ S + G GLVG +G GK+TL R +A L PSS +++ Q+++
Sbjct: 307 VDDVSFD--------LREGETLGLVGESGSGKSTLARILA--GLLPPSSGSIIFDGQDLD 356
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQ-VEASDDSAVNIVLSADKNRVKLLKECSKLE 180
+ +L + + Q +S + + +
Sbjct: 357 LTG-----------GELRRLRRRIQMVFQDPYSSLNPRMTV------------------- 386
Query: 181 RDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVS 240
GD L E R +L +G E ++ E SGG R RV+
Sbjct: 387 ----GDI---LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439
Query: 241 LARALFLEPTLLLLDEPTNHLD 262
+ARAL LEP LL+LDEP + LD
Sbjct: 440 IARALALEPKLLILDEPVSALD 461
Score = 57.2 bits (139), Expect = 2e-09
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 187 NQLRLTEVYDELKSIEADAAEPRARRILAGLGFT-KEMQEKSTKEFSGGWRMRVSLARAL 245
+Q+R E A RA +L +G E +++ + SGG R RV +A AL
Sbjct: 112 DQIR--EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL 169
Query: 246 FLEPTLLLLDEPTNHLD 262
L+P LL+ DEPT LD
Sbjct: 170 ALKPKLLIADEPTTALD 186
Score = 29.1 bits (66), Expect = 2.8
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 18/67 (26%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGK 93
E+EN TV D V V + S + G G+VG +G GK
Sbjct: 7 EVENLTVE---------FATDGGRVPA-VRDVSFE--------VEPGEILGIVGESGSGK 48
Query: 94 TTLLRHI 100
+TL +
Sbjct: 49 STLALAL 55
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 66.1 bits (162), Expect = 4e-13
Identities = 55/190 (28%), Positives = 69/190 (36%), Gaps = 65/190 (34%)
Query: 83 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLL 142
YGL+GPNG GKTTL+R +AT L PSS + Q+V K KL
Sbjct: 28 YGLLGPNGAGKTTLMRILAT--LTPPSSGTIRIDGQDVL--------------KQPQKLR 71
Query: 143 KECSKLEQ----------VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLT 192
+ L Q E D A LK E D L L
Sbjct: 72 RRIGYLPQEFGVYPNFTVREFLDYIAW-------------LKGIPSKEVKARVDEVLELV 118
Query: 193 EVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
+ D K K SGG R RV +A+AL +P++L
Sbjct: 119 NLGDRAK--------------------------KKIGSLSGGMRRRVGIAQALVGDPSIL 152
Query: 253 LLDEPTNHLD 262
++DEPT LD
Sbjct: 153 IVDEPTAGLD 162
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 66.8 bits (164), Expect = 5e-13
Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
++VEN S P L + I G G++GPNG GK+TLL+ +A L P S ++L
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA-GLLK-PKSGEVL 60
Query: 115 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV--EASDDSAVNIVLSADKNRVKL 172
+++ A + +L K+ + + Q + +VL + L
Sbjct: 61 LDGKDI-------------ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107
Query: 173 LKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFS 232
SK DE EA L LG + + ++ E S
Sbjct: 108 FGRPSK----------------EDEEIVEEA----------LELLG-LEHLADRPVDELS 140
Query: 233 GGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
GG R RV +ARAL E +LLLDEPT+HLD
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLD 170
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 65.6 bits (160), Expect = 1e-12
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 54/190 (28%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRV 139
G GL+GPNG GK+TLLR +A L D V
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAG----------------------------ALRPDAGTV 58
Query: 140 KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV----- 194
L + V++ + + R + + + +E+D L + +V
Sbjct: 59 DL---------------AGVDLHGLSRRARARRV---ALVEQDSDTAVPLTVRDVVALGR 100
Query: 195 --YDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
+ L + ++ R LA + + ++ SGG R RV +ARAL EP LL
Sbjct: 101 IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLL 159
Query: 253 LLDEPTNHLD 262
LLDEPTNHLD
Sbjct: 160 LLDEPTNHLD 169
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 66.9 bits (164), Expect = 1e-12
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 65 FSLSPCL-KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 123
FS +P L + I R LVG NG GK+TL++ + EV
Sbjct: 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN----------------GEV-LL 55
Query: 124 DDSAVNIVLSADKNRVKLLKECSKLEQ--VEASDDSAVNIVLSADKNRVKLLKE----CS 177
DD + +++ + ++L+Q + + + V + + + LK
Sbjct: 56 DDGRIIY----EQDLI-----VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISH 106
Query: 178 KLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRM 237
+E D S N L ++ ++L E R +LA LG + SGGW
Sbjct: 107 LVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAA---LSSLSGGWLR 163
Query: 238 RVSLARALFLEPTLLLLDEPTNHLD 262
+ +L RAL P +LLLDEPTNHLD
Sbjct: 164 KAALGRALVSNPDVLLLDEPTNHLD 188
Score = 43.4 bits (103), Expect = 8e-05
Identities = 23/35 (65%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 229 KEFSGGWRMRVSLARALFLEPT-LLLLDEPTNHLD 262
K SGG R R+ LAR LFL+P+ LL+LDEPTN LD
Sbjct: 439 KALSGGERNRLLLAR-LFLKPSNLLILDEPTNDLD 472
Score = 35.3 bits (82), Expect = 0.032
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLR 98
V++FS Q+ G + L+GPNG GKTTLL+
Sbjct: 335 VKDFS--------AQVQRGDKIALIGPNGCGKTTLLK 363
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 63.2 bits (154), Expect = 5e-12
Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 59/194 (30%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS-------IDLLYCEQEVEASDDSAV 128
+ G GL+GPNG GKTT LR +A L P + D++ E
Sbjct: 27 TVKPGEVTGLLGPNGAGKTTTLRMLAG--LLEPDAGFATVDGFDVVKEPAEA-------- 76
Query: 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQ 188
+ R+ + SD + + L+A +N ++ L+ DE
Sbjct: 77 -------RRRLGFV-----------SDSTGLYDRLTAREN-LEYFAGLYGLKGDELTA-- 115
Query: 189 LRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE 248
RL E+ D L E RR FS G R +V++ARAL +
Sbjct: 116 -RLEELADRL-----GMEELLDRR---------------VGGFSTGMRQKVAIARALVHD 154
Query: 249 PTLLLLDEPTNHLD 262
P +LLLDEPT LD
Sbjct: 155 PPVLLLDEPTTGLD 168
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 61.8 bits (151), Expect = 2e-11
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 45/190 (23%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+I +G +VGP+G GK+TLL + L P+S ++L +++ +
Sbjct: 27 EIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPTSGEVLINGKDLTKLS----------E 74
Query: 136 KNRVKL-LKECSKLEQVEASDDSAVNIV--LSADKNRVKLLKECSKLERDESGDNQLRLT 192
K KL K+ + Q N++ L+ +N V+L + L
Sbjct: 75 KELAKLRRKKIGFVFQ-------NFNLLPDLTVLEN-VELPLLIAGKSAGRRKRAAEELL 126
Query: 193 EVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
EV LG + +K E SGG + RV++ARAL P ++
Sbjct: 127 EV----------------------LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKII 164
Query: 253 LLDEPTNHLD 262
L DEPT +LD
Sbjct: 165 LADEPTGNLD 174
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 62.8 bits (153), Expect = 2e-11
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 56/233 (24%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGK 93
++E V+ + + TVD N V +K +F+L P G GLVG +G GK
Sbjct: 277 DVEQLQVAFPIRKGILKRTVDHNVV-VKNISFTLRP----------GETLGLVGESGSGK 325
Query: 94 TT----LLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLE 149
+T LLR I ++ E+ N+ NR +LL +++
Sbjct: 326 STTGLALLRLINSQG--------------EIWFDGQPLHNL------NRRQLLPVRHRIQ 365
Query: 150 QVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209
V +S++N L+ L+ E G LR+ + ++ A E +
Sbjct: 366 VVFQDPNSSLNPRLNV-------------LQIIEEG---LRVHQ-----PTLSAAQREQQ 404
Query: 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ +G E + + EFSGG R R+++ARAL L+P+L++LDEPT+ LD
Sbjct: 405 VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 40.1 bits (94), Expect = 7e-04
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV +A AL P LL+ DEPT LD
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 60.2 bits (147), Expect = 6e-11
Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 56/195 (28%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
I G +VGP+G GK+TLL + L P+S ++ ++ + L+A
Sbjct: 26 SIEKGEFVAIVGPSGSGKSTLLNILGG--LDRPTSGEVRVDGTDISKLSEKE----LAAF 79
Query: 136 KNR--------VKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN 187
+ R LL + + LE N+ L
Sbjct: 80 RRRHIGFVFQSFNLLPDLTALE----------NVELPL---------------------- 107
Query: 188 QLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL 247
L + RA +L +G + E SGG + RV++ARAL
Sbjct: 108 ---------LLAGVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRVAIARALAN 157
Query: 248 EPTLLLLDEPTNHLD 262
+P ++L DEPT +LD
Sbjct: 158 DPKIILADEPTGNLD 172
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 60.2 bits (147), Expect = 7e-11
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
+++ S S I G GLVG +G GK+TL R I L P+S +++ +++
Sbjct: 21 LDDVSFS--------IKKGETLGLVGESGSGKSTLARAIL--GLLKPTSGSIIFDGKDLL 70
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASD-DSAVNIVLSADKNRV-KLLKECSKL 179
+L K K Q+ D S++N + + + + E ++
Sbjct: 71 KLSR--------------RLRKIRRKEIQMVFQDPMSSLNPRM-----TIGEQIAEPLRI 111
Query: 180 ERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRV 239
S + +L G+G +E+ + E SGG R RV
Sbjct: 112 HGKLSKKEARKE-----------------AVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154
Query: 240 SLARALFLEPTLLLLDEPTNHLD 262
++ARAL L P LL+ DEPT+ LD
Sbjct: 155 AIARALALNPKLLIADEPTSALD 177
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 60.3 bits (147), Expect = 7e-11
Identities = 52/204 (25%), Positives = 75/204 (36%), Gaps = 53/204 (25%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
V + SL + G GL+GPNG GKTTL ++ T PSS +++ +++
Sbjct: 20 VNDVSLE--------VRPGEIVGLIGPNGAGKTTL-FNLITGFYK-PSSGTVIFRGRDIT 69
Query: 122 ASDDSAVN---IVLSADKNR----VKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLK 174
+ I R +L + LE V R+ L
Sbjct: 70 GLPPHRIARLGIA------RTFQITRLFPGLTVLENV-----------AVGAHARLGLS- 111
Query: 175 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGG 234
L E E +A E RAR +L +G + S G
Sbjct: 112 ------------GLLGRPRARKE----EREARE-RARELLEFVGLGELADRP-AGNLSYG 153
Query: 235 WRMRVSLARALFLEPTLLLLDEPT 258
+ R+ +ARAL +P LLLLDEP
Sbjct: 154 QQRRLEIARALATQPKLLLLDEPA 177
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 61.5 bits (150), Expect = 7e-11
Identities = 57/197 (28%), Positives = 78/197 (39%), Gaps = 48/197 (24%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIAT-------RALAIPSSIDLLYCEQEVEASDDSAV-NIV 131
G + G++G NG GK+TLLR +A A P I + Y QE + V V
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-IKVGYLPQEPQLDPTKTVRENV 89
Query: 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLER--DESG---- 185
L +++ A D AD + LL E ++L+ D +
Sbjct: 90 EEGVAEIKDALDRFNEISAKFAEPD--------ADMD--ALLAEQAELQEIIDAADAWDL 139
Query: 186 DNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL 245
D +L I DA R + + SGG R RV+L R L
Sbjct: 140 DRKL----------EIAMDAL-----RCPPW--------DADVTKLSGGERRRVALCRLL 176
Query: 246 FLEPTLLLLDEPTNHLD 262
+P +LLLDEPTNHLD
Sbjct: 177 LSKPDMLLLDEPTNHLD 193
Score = 49.9 bits (120), Expect = 6e-07
Identities = 30/82 (36%), Positives = 39/82 (47%)
Query: 181 RDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVS 240
RD N+ E+ L I+ E +R + F Q+K + SGG R RV
Sbjct: 394 RDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVH 453
Query: 241 LARALFLEPTLLLLDEPTNHLD 262
LA+ L +LLLDEPTN LD
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLD 475
Score = 38.0 bits (89), Expect = 0.004
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 84 GLVGPNGHGKTTLLRHIATR------ALAIPSSIDLLYCEQEVEASDDS 126
G++GPNG GK+TL R I + + I ++ L Y +Q +A D +
Sbjct: 352 GVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 58.0 bits (141), Expect = 1e-10
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV+LARAL L P LLLLDEPT+ LD
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112
Score = 45.3 bits (108), Expect = 4e-06
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128
+ +G LVGPNG GK+TLLR IA L P+S ++L +++ +
Sbjct: 21 TLKAGEIVALVGPNGSGKSTLLRAIA--GLLKPTSGEILIDGKDIAKLPLEEL 71
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 58.2 bits (142), Expect = 1e-10
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 199 KSIEADAAEPRARRI------LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
K + + + + AR+I L LG + ++ E SGG R RV LARAL EP +L
Sbjct: 61 KDLASLSPKELARKIAYVPQALELLG-LAHLADRPFNELSGGERQRVLLARALAQEPPIL 119
Query: 253 LLDEPTNHLD 262
LLDEPT+HLD
Sbjct: 120 LLDEPTSHLD 129
Score = 40.5 bits (96), Expect = 2e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
I +G G++GPNG GK+TLL+ +A
Sbjct: 21 SIEAGEIVGILGPNGAGKSTLLKTLA 46
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 59.1 bits (144), Expect = 2e-10
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 197 ELKSIEADAAEPRARRILA--GL-GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
EL+ A RA+ +L GL GF ++K + SGG R RV++ARAL P LLL
Sbjct: 98 ELRGKSKAEARERAKELLELVGLAGF----EDKYPHQLSGGMRQRVAIARALATRPKLLL 153
Query: 254 LDEPTNHLD 262
LDEP LD
Sbjct: 154 LDEPFGALD 162
Score = 33.3 bits (77), Expect = 0.080
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+E+ +LS + G ++GP+G GK+TLLR IA
Sbjct: 19 LEDINLS--------VEKGEFVAILGPSGCGKSTLLRLIA 50
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 59.0 bits (144), Expect = 2e-10
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 197 ELKSIEADAAEPRARRILA--GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLL 254
EL+ + A RA +L GL + + SGG R RV+LARAL ++P +LLL
Sbjct: 99 ELQGVPKAEARERAEELLELVGL---SGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155
Query: 255 DEPTNHLD 262
DEP + LD
Sbjct: 156 DEPFSALD 163
Score = 35.9 bits (84), Expect = 0.010
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+E+ SLS + G LVGP+G GK+TLLR IA
Sbjct: 20 LEDISLS--------VEEGEFVALVGPSGCGKSTLLRIIA 51
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 59.0 bits (143), Expect = 2e-10
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 37/188 (19%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
++ G ++GP+G GKTTLLR I L P + + + ++ + LS
Sbjct: 25 EVKPGEVVAIIGPSGSGKTTLLRCI--NLLEQPEAGTIRVGDITIDTA------RSLSQQ 76
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
K ++ L++ V V L + LE G +
Sbjct: 77 KGLIRQLRQ-------------HVGFVFQN----FNLFPHRTVLENIIEGPVIV------ 113
Query: 196 DELKSIEADAAEPRARRILAGLGFT-KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLL 254
K + A RAR +LA +G KE + SGG + RV++ARAL + P ++L
Sbjct: 114 ---KGEPKEEATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEVILF 168
Query: 255 DEPTNHLD 262
DEPT+ LD
Sbjct: 169 DEPTSALD 176
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 58.8 bits (143), Expect = 2e-10
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 194 VYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
+ + L+ ++ R +L +G ++ E SGG R R+++ARAL EP LL+
Sbjct: 105 LSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI 164
Query: 254 LDEPTNHLD 262
LDEPT+ LD
Sbjct: 165 LDEPTSALD 173
Score = 38.0 bits (89), Expect = 0.002
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 18/68 (26%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGK 93
+ N ++ + + + N SL I G G+VG +G GK
Sbjct: 5 SVRNLSIVYGGGKFAFHA----------LNNVSLE--------IERGETLGIVGESGSGK 46
Query: 94 TTLLRHIA 101
+TL R +A
Sbjct: 47 STLARLLA 54
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 57.4 bits (140), Expect = 3e-10
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + R++LA+AL +P LL+LDEPT+ LD
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLD 127
Score = 46.2 bits (111), Expect = 3e-06
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
+++ SL+ + G YGL+GPNG GKTTL++ I L P S
Sbjct: 16 LDDISLT--------VEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDS 54
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 58.5 bits (142), Expect = 3e-10
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A R +LA LG + +K +E +GG R RV +ARAL P LLLLDEPT LD
Sbjct: 109 ARARIAELLARLGLAERADDK-VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
Score = 30.0 bits (68), Expect = 0.93
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
+ GR L+GPNG GK+TL + TR
Sbjct: 23 TVRPGRFVALLGPNGAGKSTLFS-LLTRLYVAQEG 56
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 57.4 bits (139), Expect = 5e-10
Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 51/190 (26%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
++ G +GL+GPNG GKTT ++ + T
Sbjct: 22 RVRRGEIFGLLGPNGAGKTTTIKMLTT--------------------------------- 48
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTE-- 193
LLK S V D +V + R + + +D S D++L E
Sbjct: 49 -----LLKPTSGRATVAGHD-----VVREPREVR----RRIGIVFQDLSVDDELTGWENL 94
Query: 194 -VYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
++ L + R +L +G E ++ K +SGG R R+ +AR+L P +L
Sbjct: 95 YIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 253 LLDEPTNHLD 262
LDEPT LD
Sbjct: 154 FLDEPTIGLD 163
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 57.8 bits (141), Expect = 5e-10
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 53/193 (27%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+ G +GL+GPNG GKTTL ++ + L P+S +L+ +++ L
Sbjct: 22 SVRPGEIHGLIGPNGAGKTTLF-NLISGFLR-PTSGSVLFDGEDITG---------LPPH 70
Query: 136 K-NR---------VKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESG 185
+ R +L E + LE N++++A R SG
Sbjct: 71 EIARLGIGRTFQIPRLFPELTVLE----------NVMVAA-------------QARTGSG 107
Query: 186 DNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL 245
R E A RA +L +G E S G + R+ +ARAL
Sbjct: 108 LLLARARREERE--------ARERAEELLERVGLADLADRP-AGELSYGQQRRLEIARAL 158
Query: 246 FLEPTLLLLDEPT 258
+P LLLLDEP
Sbjct: 159 ATDPKLLLLDEPA 171
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 57.2 bits (139), Expect = 6e-10
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 51/195 (26%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI----V 131
I G L+GP+G GK+TLLR ++ L A D+ V + +
Sbjct: 22 DIPKGEITALIGPSGCGKSTLLR-----------LLNRLNDLIP-GAPDEGEVLLDGKDI 69
Query: 132 LSADKNRVKLLKECSKLEQ----VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN 187
D + ++L + + Q S N+ ++L K E DE +
Sbjct: 70 YDLDVDVLELRRRVGMVFQKPNPFPGS--IYDNVAYG-----LRLHGIKLKEELDERVEE 122
Query: 188 QLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL 247
LR ++DE+K D SGG + R+ LARAL
Sbjct: 123 ALRKAALWDEVK----DRLHAL--------------------GLSGGQQQRLCLARALAN 158
Query: 248 EPTLLLLDEPTNHLD 262
EP +LLLDEPT+ LD
Sbjct: 159 EPEVLLLDEPTSALD 173
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 57.4 bits (139), Expect = 1e-09
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRV 139
G +G +GPNG GKTT +R + T L P S V D
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTT--LLRP----------------TSGTARVAGYD---- 56
Query: 140 KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK 199
+++E K+ + + ++ + + ++ D +G L E+ L
Sbjct: 57 -VVREPRKVRR------------------SIGIVPQYASVDEDLTGRENL---EMMGRLY 94
Query: 200 SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTN 259
+ D AE RA +L E ++ +SGG R R+ +A +L +P +L LDEPT
Sbjct: 95 GLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 260 HLD 262
LD
Sbjct: 154 GLD 156
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 56.7 bits (137), Expect = 1e-09
Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 45/186 (24%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
G GL+G NG GKTTLLR IAT L IP S + V+ V
Sbjct: 25 AEEGEITGLLGENGAGKTTLLRMIAT--LLIPDSGKVTID----------GVDTVRDPSF 72
Query: 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 196
R ++ E R + +N +
Sbjct: 73 VR----------RKIGVLFG------------------ERGLYARLTARENLKYFARLNG 104
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
L E A R + L E ++ EFS G + +V++ARAL +P++L+LDE
Sbjct: 105 -LSRKEIKA---RIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159
Query: 257 PTNHLD 262
PT+ LD
Sbjct: 160 PTSGLD 165
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 57.7 bits (140), Expect = 1e-09
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 199 KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
+ A + R L +G + + EFSGG R R+++ARAL L+P L+LLDEPT
Sbjct: 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT 454
Query: 259 NHLD 262
+ LD
Sbjct: 455 SALD 458
Score = 44.2 bits (105), Expect = 3e-05
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 205 AAEPRARRIL--AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
AA RA +L G+ ++ + E SGG R RV +A AL EP LL+ DEPT LD
Sbjct: 130 AARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
Score = 29.9 bits (68), Expect = 1.3
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 53 VDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKT----TLLRHIATRALAIP 108
+ + SV E ++ + I +G LVG +G GK+ ++L + + A A P
Sbjct: 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHP 68
Query: 109 SSIDLLYCEQEVEASDDSAVNIVLSAD 135
S +L+ +++ A+ + + V
Sbjct: 69 SG-SILFDGEDLLAASERQLRGVRGNK 94
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 56.5 bits (137), Expect = 2e-09
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
++ + + R +L +G +E + E SGG R R+ +ARAL L P L++ D
Sbjct: 75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVAD 134
Query: 256 EPTNHLD 262
EP + LD
Sbjct: 135 EPVSALD 141
Score = 29.5 bits (67), Expect = 1.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I G GLVG +G GK+TL R I
Sbjct: 36 IKEGETLGLVGESGCGKSTLGRLIL 60
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 56.6 bits (137), Expect = 2e-09
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 44/204 (21%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 131
V +I G ++G G GKTT + H+ AL +P D + +
Sbjct: 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHL--NALLLP---------------DTGTIEWI 67
Query: 132 LSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRL 191
+KN+ K ++ LE++ K R K +K+ ++ R Q
Sbjct: 68 FKDEKNKKKTKEKEKVLEKLVIQ------------KTRFKKIKKIKEIRRRVGVVFQFAE 115
Query: 192 TEVYDELKSIEAD-------------AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMR 238
+++++ +IE D A+ RA + + +G + ++S E SGG + R
Sbjct: 116 YQLFEQ--TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR 173
Query: 239 VSLARALFLEPTLLLLDEPTNHLD 262
V+LA L +EP L+ DEPT LD
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLD 197
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 55.6 bits (135), Expect = 2e-09
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R R +L +G + E SGG + RV+LARAL EP+LLLLDEP + LD
Sbjct: 110 RVRELLELVGLEGLLNRYPH-ELSGGQQQRVALARALAREPSLLLLDEPLSALD 162
Score = 40.6 bits (96), Expect = 3e-04
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
+++ SL+ + G L+GP+G GKTTLLR IA L P S ++L ++V
Sbjct: 16 LDDLSLT--------VEPGEFLALLGPSGCGKTTLLRLIA--GLERPDSGEILIDGRDV 64
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 56.0 bits (135), Expect = 2e-09
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
RA +LA +G + + E SGG R RV++ARAL P L+L DEPT +LD
Sbjct: 122 INSRALEMLAAVGLEHRANHRPS-ELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 56.1 bits (135), Expect = 2e-09
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 29/190 (15%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132
V Q +G ++G +G GK+T LR I L PS ++ Q + D + +
Sbjct: 24 VSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81
Query: 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLT 192
ADKN+++LL+ ++L V L + LE +
Sbjct: 82 -ADKNQLRLLR--TRLTMV---------------FQHFNLWSHMTVLEN---------VM 114
Query: 193 EVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
E ++ + A RA + LA +G + Q K SGG + RVS+ARAL +EP +L
Sbjct: 115 EAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174
Query: 253 LLDEPTNHLD 262
L DEPT+ LD
Sbjct: 175 LFDEPTSALD 184
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 54.5 bits (132), Expect = 3e-09
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+ LARAL+ P +L+LDEP +HLD
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLD 128
Score = 31.4 bits (72), Expect = 0.28
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
I G ++GP+G GK+TL R I
Sbjct: 24 SIEPGESLAIIGPSGSGKSTLARLIL 49
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 54.8 bits (133), Expect = 4e-09
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTK---EFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
AE RA +L +G + +K+ + SGG + RV++ARAL + P ++L DEPT+
Sbjct: 110 AEAEERALELLEKVG----LADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165
Query: 261 LD 262
LD
Sbjct: 166 LD 167
Score = 27.5 bits (62), Expect = 5.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 85 LVGPNGHGKTTLLRHI 100
++GP+G GK+TLLR I
Sbjct: 31 IIGPSGSGKSTLLRCI 46
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 56.5 bits (137), Expect = 4e-09
Identities = 53/221 (23%), Positives = 78/221 (35%), Gaps = 47/221 (21%)
Query: 48 SKRSTVDDNSVDIKVENFSLS-----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
K ++ ++I +EN S P L + I +G+ LVG +G GK+TLL +
Sbjct: 309 EKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368
Query: 102 TRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNI 161
I VN + D + K+ S + Q N
Sbjct: 369 GFLAPTQGEIR---------------VNGIDLRDLSPEAWRKQISWVSQ---------NP 404
Query: 162 VLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTK 221
L A R +N + L + I A + +
Sbjct: 405 YLFAGTIR----------------EN-ILLARPDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ + SGG R++LARAL +LLLLDEPT HLD
Sbjct: 448 TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 55.2 bits (133), Expect = 7e-09
Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 49/189 (25%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+ G +GL+GPNG GKTT LR + L P + + C + V + A
Sbjct: 29 HVQRGECFGLLGPNGAGKTTTLRMLL--GLTHPDAGSISLCGEPVPSRARHA-------- 78
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+ RV ++ + L+ D + L + Y
Sbjct: 79 -------------------------------RQRVGVVPQFDNLDPDFTVRENLLVFGRY 107
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTK--EFSGGWRMRVSLARALFLEPTLLL 253
L + A A P L F K + K E SGG + R++LARAL +P +L+
Sbjct: 108 FGLSAAAARALVPPL------LEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161
Query: 254 LDEPTNHLD 262
LDEPT LD
Sbjct: 162 LDEPTTGLD 170
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 55.4 bits (134), Expect = 7e-09
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 44/192 (22%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132
V + G R ++GP+G GK+TLL L P ++ V + D V +
Sbjct: 354 VSLDLPPGERVAILGPSGSGKSTLL-ATLAGLLD-PLQGEVTLDGVPVSSLDQDEVRRRV 411
Query: 133 SADKNRVKLLKECSKLEQVEASDDSAV--NIVLSADKNRVKLLKECSKLERDESGDNQLR 190
S L D+ V N+ L+ + + DE
Sbjct: 412 SVCAQDAHLF-------------DTTVRENLRLAR--------PDAT----DE------- 439
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT 250
E++ L E R + GL + E + SGG R R++LARAL +
Sbjct: 440 --ELWAAL---ERVGLADWLRALPDGLD--TVLGEGGAR-LSGGERQRLALARALLADAP 491
Query: 251 LLLLDEPTNHLD 262
+LLLDEPT HLD
Sbjct: 492 ILLLDEPTEHLD 503
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 55.0 bits (133), Expect = 8e-09
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 199 KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
K ++ + R L +G + ++ + SGG + RV+LARAL EP +LLLDEP
Sbjct: 106 KKLKKAEIKARVEEALELVGL-EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164
Query: 259 NHLD 262
+ LD
Sbjct: 165 SALD 168
Score = 40.7 bits (96), Expect = 4e-04
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V++ SL I G L+GP+G GKTTLLR IA
Sbjct: 21 VDDISLD--------IKKGEFVTLLGPSGCGKTTLLRMIA 52
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 54.7 bits (133), Expect = 1e-08
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R RV+L R L +P +LLLDEPTNHLD
Sbjct: 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 48.2 bits (116), Expect = 2e-06
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 224 QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
Q+K SGG R R+ LA+ L +LLLDEPTN LD
Sbjct: 439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
Score = 33.2 bits (77), Expect = 0.12
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 84 GLVGPNGHGKTTLLRHIATR------ALAIPSSIDLLYCEQEVEASDDS 126
G++GPNG GK+TL + I + + I ++ L Y +Q +A D +
Sbjct: 354 GIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 402
Score = 32.8 bits (76), Expect = 0.19
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 84 GLVGPNGHGKTTLLRHIA 101
G++G NG GK+TLLR +A
Sbjct: 37 GVLGLNGAGKSTLLRIMA 54
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 53.6 bits (129), Expect = 1e-08
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A ++LA +G + + K + SGG R RV +ARAL +EP LLLLDEP LD
Sbjct: 112 IAHQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164
Score = 33.2 bits (76), Expect = 0.10
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+E+ SL IASG ++GP+G GKTTLL IA
Sbjct: 21 LEDVSL--------TIASGELVVVLGPSGCGKTTLLNLIA 52
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 53.1 bits (128), Expect = 2e-08
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+L LG + + + SGG + RV+LARAL +P LLLLDEP + LD
Sbjct: 111 SVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163
Score = 32.7 bits (75), Expect = 0.14
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
LK+ + + G+ G +G GK+TLLR IA
Sbjct: 15 LKIDFDL-NEEVTGIFGASGAGKSTLLRCIA 44
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 53.5 bits (129), Expect = 2e-08
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 40/189 (21%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ--EVEASDDSAVNIVLS 133
Q+ G + +VGPNG GKTTLL + T S L + + E + I L
Sbjct: 53 QVNPGEHWAIVGPNGAGKTTLLS-LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111
Query: 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTE 193
+ S+L + ++ ++VLS G Q LT
Sbjct: 112 S-----------SELHERFRVRETVRDVVLSG--------------FFASIGIYQEDLTA 146
Query: 194 VYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
+ AA+ L L K + ++ S G + RV +ARAL +P LL+
Sbjct: 147 E-------DLAAAQ-----WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLI 194
Query: 254 LDEPTNHLD 262
LDEP LD
Sbjct: 195 LDEPAQGLD 203
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 52.8 bits (127), Expect = 2e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 199 KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
+ + + A +A +L L + + + FSGG + RV++AR ++ +LLLDEPT
Sbjct: 121 RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180
Query: 259 NHLD 262
LD
Sbjct: 181 ASLD 184
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 52.0 bits (125), Expect = 3e-08
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 43/184 (23%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRV 139
G L+G NG GK+TLL H+ L P S +L + ++ S L + RV
Sbjct: 18 GEVLALLGANGAGKSTLLLHLN--GLLRPQSGAVLIDGEPLDYSRKG-----LLERRQRV 70
Query: 140 KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDES-GDNQLRLTEVYDEL 198
L+ + DD + +AD +++D + G L L+E E+
Sbjct: 71 GLV--------FQDPDDQ----LFAAD------------VDQDVAFGPLNLGLSE--AEV 104
Query: 199 KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
+ R R L +G + ++E+ T SGG + RV++A A+ + P +LLLDEPT
Sbjct: 105 ER--------RVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155
Query: 259 NHLD 262
LD
Sbjct: 156 AGLD 159
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 53.2 bits (128), Expect = 3e-08
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
AE AR LA +G ++ + EK+ E SGG RV++A L +EP +L+LDEPT LD
Sbjct: 121 AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 52.5 bits (127), Expect = 3e-08
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E SGG + RV+LARAL L+P LLL DEPT LD
Sbjct: 136 ELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
Score = 33.6 bits (78), Expect = 0.065
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G ++GP+G GK+TLLR I
Sbjct: 22 DVRRGEILAIIGPSGSGKSTLLRLIV 47
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 52.6 bits (127), Expect = 3e-08
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E SGG R RV+LARA+ L+P LL LDEPT+ LD
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177
Score = 31.8 bits (73), Expect = 0.31
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G ++G +G GK+TLLR I
Sbjct: 30 DVPRGEILAILGGSGSGKSTLLRLIL 55
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 51.4 bits (124), Expect = 4e-08
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV+LARAL ++P +LLLDEPT+ LD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALD 132
Score = 39.9 bits (94), Expect = 4e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
I +G L+GP+G GK+TLLR IA
Sbjct: 22 NIEAGEIVALLGPSGSGKSTLLRCIA 47
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 53.1 bits (128), Expect = 4e-08
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 202 EADAAEPRARRILAGL-GFTKEMQE-------KSTKEFSGGWRMRVSLARALFLEPTLLL 253
+A AE R AGL F + + + SGG R++LARA + LLL
Sbjct: 422 DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481
Query: 254 LDEPTNHLD 262
LDEPT HLD
Sbjct: 482 LDEPTAHLD 490
Score = 34.2 bits (79), Expect = 0.057
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLL 97
V + G R LVGP+G GK+TLL
Sbjct: 341 VSFTVPPGERVALVGPSGAGKSTLL 365
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 53.1 bits (128), Expect = 4e-08
Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 49/230 (21%)
Query: 41 SQSSKASSKRSTVDDNSVDIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGK 93
Q + + +++ N S + LK +A G + ++G +G GK
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377
Query: 94 TTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEA 153
+TLL + A P + E+ + D+ A+ +S RV L
Sbjct: 378 STLL-QLLAGAW-DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF----------- 424
Query: 154 SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE-ADAAEPRARR 212
+ + + A+ + DE E++ L+ + E
Sbjct: 425 -SGTLRDNLRLANPD-----------ASDE---------ELWAALQQVGLEKLLESAPDG 463
Query: 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ LG E + SGG R R++LARAL + L LLDEPT LD
Sbjct: 464 LNTWLG---EGGRR----LSGGERRRLALARALLHDAPLWLLDEPTEGLD 506
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 50.8 bits (123), Expect = 6e-08
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALD 128
Score = 35.4 bits (83), Expect = 0.010
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLR 98
+++ SL+ I G + +VGP+G GK+TLL+
Sbjct: 18 LKDVSLT--------IKPGEKVAIVGPSGSGKSTLLK 46
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 51.6 bits (124), Expect = 6e-08
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 194 VYDELK---SIEADAAEPRA-RRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
VYD L I +P L + K+ E SGG + R+SL R L P
Sbjct: 97 VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156
Query: 250 TLLLLDEPTNHLD 262
+LLLDE T+ LD
Sbjct: 157 KVLLLDEITSALD 169
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 51.4 bits (124), Expect = 7e-08
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 207 EPRARRILAGLGFTKEMQEKSTKE-FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ LG +E E+ E FSGG + R + + L LEP L +LDEP + LD
Sbjct: 120 IKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 51.2 bits (123), Expect = 8e-08
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
EL+ + + A+ +L +G K + + SGG + RV+LARA P +L DE
Sbjct: 114 ELRGESSADSRAGAKALLEAVGLGKRLTH-YPAQLSGGEQQRVALARAFAGRPDVLFADE 172
Query: 257 PTNHLD 262
PT +LD
Sbjct: 173 PTGNLD 178
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 77 IASGRRYGLVGPNGHGKTTLL 97
+ G +VGP+G GK+TLL
Sbjct: 33 VKRGETVAIVGPSGSGKSTLL 53
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 51.0 bits (123), Expect = 9e-08
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 211 RRILAGLGFT--KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ L E+ ++ E SGG + RV LARAL +P LLLLDEP +D
Sbjct: 111 AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Score = 38.3 bits (90), Expect = 0.002
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 22/68 (32%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGK 93
E+E+ TVS +E+ S + G +VGPNG GK
Sbjct: 1 EVEDLTVSYGGH--------------PVLEDVSFE--------VKPGEFLAIVGPNGAGK 38
Query: 94 TTLLRHIA 101
+TLL+ I
Sbjct: 39 STLLKAIL 46
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 51.5 bits (124), Expect = 1e-07
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 204 DAAEPRAR--RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
AAE R + ++A +G E ++ FSGG R R+++ARAL L+P +++ DEP + L
Sbjct: 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185
Query: 262 D 262
D
Sbjct: 186 D 186
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 50.7 bits (122), Expect = 1e-07
Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 50/187 (26%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
+ G +GL+GPNG GKTT +R I ++ DS +
Sbjct: 23 VEKGEIFGLLGPNGAGKTTTIRMIL----------GIIL--------PDSGEVLF----- 59
Query: 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY- 195
D ++I A +NR+ L E L +QL VY
Sbjct: 60 ------------------DGKPLDI---AARNRIGYLPEERGLYPKMKVIDQL----VYL 94
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+LK ++ + A R L L + E K +E S G + +V A+ +P LL+LD
Sbjct: 95 AQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
Query: 256 EPTNHLD 262
EP + LD
Sbjct: 154 EPFSGLD 160
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 51.2 bits (123), Expect = 1e-07
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A+ +AR ++ +G +E+ +S E SGG RV++A L +EP +L+LDEPT LD
Sbjct: 121 AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Score = 28.4 bits (64), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHI 100
I SG ++G G GK+TLL+H+
Sbjct: 30 IPSGSYVAIIGHTGSGKSTLLQHL 53
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 50.9 bits (122), Expect = 1e-07
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
AE +AR +LA +G + + E SGG + RV++ARAL ++P L+L DEPT+ LD
Sbjct: 112 EAEKQARELLAKVGLAERAHHYPS-ELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 51.8 bits (125), Expect = 1e-07
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R++LARAL +P +LLLDE T+ LD
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALD 641
Score = 36.4 bits (85), Expect = 0.012
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLR 98
+E+ SL I G + +VG +G GK+TLL+
Sbjct: 489 LEDLSLE--------IPPGEKVAIVGRSGSGKSTLLK 517
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 50.9 bits (122), Expect = 2e-07
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
+L +E A ++L +G + +++ + SGG R RV +ARAL P LLLLDE
Sbjct: 96 QLAGVEKMQRLEIAHQMLKKVGL-EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154
Query: 257 PTNHLD 262
P LD
Sbjct: 155 PFGALD 160
Score = 27.7 bits (62), Expect = 5.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ SG ++GP+G GKTTLL IA
Sbjct: 23 TLESGELLVVLGPSGCGKTTLLNLIA 48
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 50.4 bits (121), Expect = 2e-07
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A+ RA +L +G + + + E SGG R RV++ARAL +P+L+L DEPT +LD
Sbjct: 118 AKERAYEMLEKVGLEHRINHRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 50.1 bits (120), Expect = 2e-07
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
+ +AA RAR +LA L + + FSGG + RV++AR + +LLLDEPT
Sbjct: 120 VPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179
Query: 261 LD 262
LD
Sbjct: 180 LD 181
Score = 32.0 bits (73), Expect = 0.23
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 60 IKVENFS------------LSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
++VE+ S L V + +G L GP+G GK+TLL+ +
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL 54
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 49.8 bits (119), Expect = 2e-07
Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 46/187 (24%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
A G +VGP+G GK+TLL IA P S +L +V A+ + + +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIA--GFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+N + A N+ L L+LT
Sbjct: 78 EN------------NLFAHLTVEQNVGLGLSPG--------------------LKLTAE- 104
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+ ++IE A GL ++++ E SGG R RV+LAR L + +LLLD
Sbjct: 105 -DRQAIEVALAR-------VGLA---GLEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153
Query: 256 EPTNHLD 262
EP LD
Sbjct: 154 EPFAALD 160
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 49.8 bits (119), Expect = 2e-07
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E+ ++ E SGG R RV +ARAL P++LLLDEP LD
Sbjct: 105 ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Score = 34.8 bits (80), Expect = 0.025
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 80 GRRYGLVGPNGHGKTTLLRHI 100
G GL+GPNG GKTTLLR I
Sbjct: 6 GELLGLLGPNGAGKTTLLRAI 26
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.0 bits (119), Expect = 2e-07
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 44/196 (22%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLR-----HIATRALAIPSSIDLLYCEQEVEASDDSA 127
V + G L+GP+G GKTT LR H T + I L + D
Sbjct: 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL-------DGQDIYG 75
Query: 128 VNIVLSADKNRVKLL-KECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGD 186
+ A + RV ++ ++ + + D+ + L+ ++R L+ E +
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM---------EVAE 126
Query: 187 NQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF 246
LR ++DE+K R + GL SGG + R+ +ARAL
Sbjct: 127 RSLRGAALWDEVKD--------RLKTPATGL--------------SGGQQQRLCIARALA 164
Query: 247 LEPTLLLLDEPTNHLD 262
+EP +LL+DEPT+ LD
Sbjct: 165 VEPEILLMDEPTSALD 180
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 49.8 bits (119), Expect = 3e-07
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 214 LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
L+ +G KE + K SGG RVS+AR L P +LLLDEPT+ LD
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 50.4 bits (121), Expect = 3e-07
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R RV+LARAL +EP +LLLDEP LD
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALD 169
Score = 42.0 bits (99), Expect = 2e-04
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+ I SG L+GP+G GK+TLLR IA
Sbjct: 21 ISLDIKSGELVALLGPSGAGKSTLLRIIA 49
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 50.2 bits (120), Expect = 3e-07
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 46/214 (21%)
Query: 57 SVDIKVENFSLSPCLKVQKQ--------IASGRRYGLVGPNGHGKTTLLRHIATRALAIP 108
S+ + ++ SP ++K+ + G LVG G GK+TL++H AL P
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHF--NALLKP 59
Query: 109 SSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKN 168
SS + + + +KN KL K+ S + Q +
Sbjct: 60 SSGTITIAGYHITPE---------TGNKNLKKLRKKVSLVFQFPEAQ------------- 97
Query: 169 RVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKST 228
L E + L+ E G +E D A+ +A + L +G ++++ KS
Sbjct: 98 ----LFENTVLKDVEFGPKNFGFSE----------DEAKEKALKWLKKVGLSEDLISKSP 143
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E SGG RV++A + EP +L LDEP LD
Sbjct: 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 49.8 bits (120), Expect = 3e-07
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTK---EFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
A +A +L +G + +K+ + SGG + RV++ARAL ++P ++L DEPT+
Sbjct: 111 AEAREKALELLEKVG----LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
Query: 261 LD 262
LD
Sbjct: 167 LD 168
Score = 30.6 bits (70), Expect = 0.68
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLR 98
I+++N S S LK + + G ++GP+G GK+TLLR
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLR 46
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 50.7 bits (122), Expect = 3e-07
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R++LARAL+ +P L++LDEP ++LD
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLD 504
Score = 29.9 bits (68), Expect = 1.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 10/37 (27%)
Query: 64 NFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
+F+L G G++GP+G GK+TL R +
Sbjct: 356 SFALQA----------GEALGIIGPSGSGKSTLARLL 382
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 49.5 bits (119), Expect = 3e-07
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 211 RRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R+ L + + + SGG + RV++ARAL EP +LLLDEP LD
Sbjct: 109 ERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
Score = 33.7 bits (78), Expect = 0.052
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
I G + L+GP+G GKTTLLR IA
Sbjct: 22 DIKEGEFFTLLGPSGCGKTTLLRLIA 47
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 50.0 bits (119), Expect = 3e-07
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 50/233 (21%)
Query: 40 VSQSSKASSKRSTVDDNSVDIKVENFSLS-----PCLKVQKQIASGRRYGLVGPNGHGKT 94
++ SS++ S +T++ + +VE + + V +I + + +GP+G GK+
Sbjct: 1 MTYSSRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKS 60
Query: 95 TLLRHIATRALAIPSSI---DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQV 151
TLLR IP + LLY ++ + DS +N VKL ++ + Q
Sbjct: 61 TLLRCFNRMNDLIPGAKVEGRLLYRDRNIY---DSQIN--------SVKLRRQVGMVFQR 109
Query: 152 EASDDSAV--NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 209
++ NI + N K DE ++ LR +++E+K
Sbjct: 110 PNPFPKSIYENIAFAPRANGYKG-------NLDELVEDSLRRAAIWEEVKD--------- 153
Query: 210 ARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+++EK T SGG + R+ +ARA+ ++P +LL+DEP + LD
Sbjct: 154 ------------KLKEKGTA-LSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 49.2 bits (118), Expect = 3e-07
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 194 VYD------ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL 247
VYD +L+ + D + R R + L + K K+ SGG R RV+L RA+
Sbjct: 89 VYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-PKQLSGGQRQRVALGRAIVR 147
Query: 248 EPTLLLLDEPTNHLD 262
EP + L+DEP ++LD
Sbjct: 148 EPKVFLMDEPLSNLD 162
Score = 36.5 bits (85), Expect = 0.007
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+++ +L IA G L+GP+G GKTT LR IA
Sbjct: 16 LDDLNLD--------IADGEFVVLLGPSGCGKTTTLRMIA 47
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 49.4 bits (118), Expect = 3e-07
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 194 VYDELKSIEADAAEPRARRI------LAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL 247
+ + + D ++ R I L GL E +K + SGG + RV++ARAL +
Sbjct: 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLT---EAADKRPGQLSGGMKQRVAIARALSI 131
Query: 248 EPTLLLLDEPTNHLD 262
P +LLLDEP LD
Sbjct: 132 RPKVLLLDEPFGALD 146
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 50.1 bits (119), Expect = 3e-07
Identities = 28/62 (45%), Positives = 35/62 (56%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
I + AE A L +G E EKS E SGG RV++A L +EP +L+LDEPT
Sbjct: 115 IPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
Query: 261 LD 262
LD
Sbjct: 175 LD 176
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 49.7 bits (119), Expect = 4e-07
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 198 LKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEP 257
L +A+A E RA + LA +G E + SGG + RV++ARAL +EP ++L DEP
Sbjct: 122 LGVSKAEAIE-RAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP 179
Query: 258 TNHLD 262
T+ LD
Sbjct: 180 TSALD 184
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 49.2 bits (118), Expect = 4e-07
Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 52/190 (27%)
Query: 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEVEASDDSAVNIVLSADKN 137
SG+ ++G +G GKTTLL I+ R + S +L+ Q
Sbjct: 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR----------------K 75
Query: 138 RVKLLKECSKLEQVEASDDSAVNI-----VLSADKNRVKLLKECSKLERDESGDNQLRLT 192
+ K + + Q D + + R L S + + L
Sbjct: 76 PDQFQKCVAYVRQ---DDILLPGLTVRETLTYTAILR---LPRKSSDAIRKKRVEDVLLR 129
Query: 193 EVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
++ + I SGG R RVS+A L +P +L
Sbjct: 130 DLALT------RIGGNLVKGI------------------SGGERRRVSIAVQLLWDPKVL 165
Query: 253 LLDEPTNHLD 262
+LDEPT+ LD
Sbjct: 166 ILDEPTSGLD 175
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 49.2 bits (118), Expect = 5e-07
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
D A RA ++L L ++ SGG + RV++ARAL +EP +LL DEPT LD
Sbjct: 116 DQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 49.1 bits (118), Expect = 5e-07
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ L +G ++++++ E SGG + RV LARAL P LLLLDEP +D
Sbjct: 119 KVDEALERVG-MEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Score = 36.4 bits (85), Expect = 0.009
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
I+VEN ++S P L+ + + G L+GPNG GK+TLL+ I
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL 51
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 48.9 bits (117), Expect = 5e-07
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++ARAL + P +LLLDEP + LD
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALD 161
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 48.9 bits (117), Expect = 6e-07
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV+LARAL +EP +LLLDEP LD
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
Score = 37.3 bits (87), Expect = 0.004
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V I SG L+GP+G GKTTLLR IA
Sbjct: 21 VSLDIPSGELVALLGPSGSGKTTLLRLIA 49
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 49.0 bits (117), Expect = 6e-07
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 37/180 (20%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
L+GP+G GK+TLLR I P E + S + + S + V L KE
Sbjct: 36 LIGPSGSGKSTLLRSINRMNDLNP--------EVTITGSIVYNGHNIYSPRTDTVDLRKE 87
Query: 145 CSKLEQVEASDDSAV--NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE 202
+ Q ++ N+V R+K +K+ L DE+ + L+ ++DE+K
Sbjct: 88 IGMVFQQPNPFPMSIYENVVYGL---RLKGIKDKQVL--DEAVEKSLKGASIWDEVKDRL 142
Query: 203 ADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
D+A LG SGG + RV +AR L P ++LLDEPT+ LD
Sbjct: 143 HDSA----------LGL------------SGGQQQRVCIARVLATSPKIILLDEPTSALD 180
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 49.6 bits (119), Expect = 6e-07
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV++ARAL P +LL DE T+ LD
Sbjct: 141 QLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Score = 36.1 bits (84), Expect = 0.012
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 128
I G +G++G +G GK+TLLR I L P+S + Q++ A ++ +
Sbjct: 29 IPKGEIFGIIGYSGAGKSTLLRLI--NLLERPTSGSVFVDGQDLTALSEAEL 78
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 48.4 bits (116), Expect = 6e-07
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R +L +G ++K K FS G + R+ +A AL P LL+LDEPTN LD
Sbjct: 106 RIDEVLDVVGLKDSAKKK-VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G YG +GPNG GKTT ++ I
Sbjct: 23 VKKGEIYGFLGPNGAGKTTTMKIIL 47
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 48.9 bits (117), Expect = 6e-07
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A + LA +G E SGG + RV+LARAL P LLLLDEP LD
Sbjct: 112 DAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALD 165
Score = 28.9 bits (65), Expect = 2.4
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
+ I +G+ +VG +G GK+TLLR +A L PS+ +LL
Sbjct: 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLA--GLETPSAGELL 70
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 49.3 bits (118), Expect = 6e-07
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 198 LKSIEADAAEPRAR--RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
LK+ AE R +L +G + K + SGG + RV+LARAL P LLLLD
Sbjct: 101 LKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159
Query: 256 EPTNHLD 262
EP + LD
Sbjct: 160 EPLSALD 166
Score = 32.7 bits (75), Expect = 0.17
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G L+GP+G GKTTLLR IA
Sbjct: 26 SVKKGEFVCLLGPSGCGKTTLLRIIA 51
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 48.8 bits (117), Expect = 6e-07
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
E++ + E RA L +G + + K E SGG + RV LARAL ++P +LL+DE
Sbjct: 128 EVQGVPRAEREERAAEALELVGL-EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186
Query: 257 PTNHLD 262
+ LD
Sbjct: 187 AFSALD 192
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 49.2 bits (118), Expect = 8e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV+LARAL +P + LLDEP ++LD
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
Score = 42.2 bits (100), Expect = 1e-04
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
I G L+GP+G GK+TLLR IA L P+S ++L ++V
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIA--GLEEPTSGEILIDGRDV 67
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 49.3 bits (118), Expect = 8e-07
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R++LARAL+ +P L++LDEP ++LD
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Score = 28.5 bits (64), Expect = 3.7
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Query: 1 MSKKLSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDI 60
+ ++K +L + L +G +EN T+ K+ T+ S
Sbjct: 285 SGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVP---PGGKKPTLRGIS--- 338
Query: 61 KVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
FSL G ++GP+G GK+TL R I
Sbjct: 339 ----FSLQA----------GEALAIIGPSGSGKSTLARLI 364
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 48.7 bits (116), Expect = 8e-07
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 53/192 (27%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
I G ++G NG GK+TL +++ + PSS +L+ + ++ S K
Sbjct: 29 IKKGEVTAILGGNGAGKSTLFQNL--NGILKPSSGRILFDGKPIDYSR-----------K 75
Query: 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 196
+KL + +V +V + DNQL VY
Sbjct: 76 GLMKLRE--------------SVGMVF-------------------QDPDNQLFSASVYQ 102
Query: 197 ELK------SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT 250
++ + D R L G +++K T S G + RV++A L +EP
Sbjct: 103 DVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161
Query: 251 LLLLDEPTNHLD 262
+L+LDEPT LD
Sbjct: 162 VLVLDEPTAGLD 173
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 48.4 bits (116), Expect = 8e-07
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R V+LARAL +P +LLLDEPT+ +D
Sbjct: 142 SGGQRQAVALARALLNDPPILLLDEPTSAMD 172
Score = 34.1 bits (79), Expect = 0.038
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
I +G + ++G G GK+TLL+ +A L P+S
Sbjct: 26 TIRAGEKVAIIGRVGSGKSTLLKLLA--GLYKPTS 58
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 48.3 bits (115), Expect = 9e-07
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
E++ + R +L + + ++ + SGG R RV+LARAL +EP +LLLDE
Sbjct: 98 EIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156
Query: 257 PTNHLD 262
P LD
Sbjct: 157 PFGALD 162
Score = 34.4 bits (79), Expect = 0.042
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V ++ +G L+GP+G GK+TLLR IA
Sbjct: 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIA 47
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 49.1 bits (118), Expect = 1e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R V+LARAL +P +LLLDEPT+ +D
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
Score = 35.6 bits (83), Expect = 0.021
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 17 SKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSV--DIKVENFSLS------ 68
++YQQ +AL Q DEL + + + + +I+ N S +
Sbjct: 426 TRYQQAKTAL---QSLDEL----MQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET 478
Query: 69 PCLKVQK-QIASGRRYGLVGPNGHGKTTLLRHIA 101
P L I G + ++G G GK+TLL+ +
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 48.4 bits (115), Expect = 1e-06
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 49/188 (26%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
IA G +GL+GPNG GK+T+ R + + P D + ++
Sbjct: 27 IARGECFGLLGPNGAGKSTIARMLL--GMISP---------------DRGKITVLGEPVP 69
Query: 137 NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 196
+R +L + A+ +V D L+ + + L + Y
Sbjct: 70 SRARLAR-------------VAIGVVPQFDN-----------LDPEFTVRENLLVFGRYF 105
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTK--EFSGGWRMRVSLARALFLEPTLLLL 254
+ + E +A P L F + + + SGG + R++LARAL +P LL+L
Sbjct: 106 GMSTREIEAVIPSL------LEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159
Query: 255 DEPTNHLD 262
DEPT LD
Sbjct: 160 DEPTTGLD 167
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 47.7 bits (114), Expect = 1e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
+ A RAR +L +G + SGG + RV++ARAL P L+L DEPT
Sbjct: 113 LSYQEARERARAMLEAVGLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171
Query: 261 LD 262
LD
Sbjct: 172 LD 173
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 47.2 bits (113), Expect = 1e-06
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R RVS+A L P+LL LDEPT+ LD
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRA 104
G ++GP+G GK+TLL +A R
Sbjct: 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 47.9 bits (115), Expect = 1e-06
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
RA L +G + + + SGG + RV++ARAL +P L+L DEP LD
Sbjct: 123 QRALAALERVGL-LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Score = 38.3 bits (90), Expect = 0.002
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 60 IKVENFSLS-----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
I+VEN S + LK V I G L+GP+G GK+TLLR + L P+S
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTS 55
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 48.1 bits (115), Expect = 1e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
E++ + E RA L +G + +K E SGG + RV LARAL +P +LL+DE
Sbjct: 132 EVQGVPKAEREERALEALELVGL-EGYADKYPNELSGGMQQRVGLARALANDPDILLMDE 190
Query: 257 PTNHLD 262
+ LD
Sbjct: 191 AFSALD 196
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 48.2 bits (115), Expect = 2e-06
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV+LARAL +EP +LLLDEP LD
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I SG+ L+GP+G GKTTLLR IA
Sbjct: 25 IPSGQMVALLGPSGSGKTTLLRIIA 49
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 47.5 bits (113), Expect = 2e-06
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 83 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLL 142
+ L+GP+G GK+TLLR R L + + E EV + + S D + +++
Sbjct: 33 FALMGPSGCGKSTLLRTF-NRLLELNEEARV---EGEVRLFGRN----IYSPDVDPIEVR 84
Query: 143 KECSKLEQ-------VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+E + Q + D+ A+ + L+ L+K SK E DE + L+ ++
Sbjct: 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLN------GLVK--SKKELDERVEWALKKAALW 136
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
DE+K D SGG R R+ +ARAL ++P +LL+D
Sbjct: 137 DEVKDRLNDYP----------------------SNLSGGQRQRLVIARALAMKPKILLMD 174
Query: 256 EPTNHLD 262
EPT ++D
Sbjct: 175 EPTANID 181
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 47.4 bits (113), Expect = 2e-06
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
EFSGG R RV +A AL P LL+ DEPT LD
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 47.5 bits (113), Expect = 2e-06
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 206 AEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R+L L + E ++ + SGG + RV+LARAL +P +LLLDEP + LD
Sbjct: 74 RAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
Score = 29.4 bits (66), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
L+GP+G GKTTLLR +A P S ++ ++V
Sbjct: 1 LLGPSGCGKTTLLRLLA--GFEQPDSGSIMLDGEDV 34
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 47.1 bits (112), Expect = 3e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
++ + R ++ +G E Q K + S G+R RV LA+AL +P +L+LDEPT
Sbjct: 105 MKGQLLKQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTG 163
Query: 261 LD 262
LD
Sbjct: 164 LD 165
Score = 30.9 bits (70), Expect = 0.67
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
GR G +GPNG GK+T ++ I T L P S + C ++V
Sbjct: 28 GRIVGFLGPNGAGKSTTMK-IITGYLP-PDSGSVQVCGEDV 66
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 47.1 bits (112), Expect = 3e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT 250
+ E L S++ + R +L +G E +K ++ SGG R+++ARAL ++P
Sbjct: 111 IGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPK 170
Query: 251 LLLLDEPTNHLD 262
L++LDE ++LD
Sbjct: 171 LIVLDEAVSNLD 182
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.5 bits (110), Expect = 4e-06
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 44/211 (20%)
Query: 60 IKVENFSLSPCLK-----VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SI 111
I++ENFS K V +I + ++GP+G GKTTLLR I IP
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG 63
Query: 112 DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVK 171
+ + Q++ ++ + +V ++ + + D+ A + K++ K
Sbjct: 64 KIYFKGQDIYDPQLD-----VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 172 LLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231
L D + L+ ++DE+KS E+ + T
Sbjct: 119 L---------DRIVEESLKKAALWDEVKS---------------------ELNKPGT-RL 147
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARAL +EP ++LLDEPT+ LD
Sbjct: 148 SGGQQQRLCIARALAVEPEVILLDEPTSALD 178
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 46.6 bits (110), Expect = 4e-06
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 42/210 (20%)
Query: 60 IKVENFSLSPCLK-----VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
IKV N S + V +I + ++GP+G GK+T L+ + R + S + +
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRV- 65
Query: 115 YCEQEVEASDDSAVN--IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKL 172
E VE + + + L+ + +V ++ L + D+ A VK+
Sbjct: 66 --EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG---------VKI 114
Query: 173 LKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFS 232
+ KLE D+ ++ L+ +++DE+K KS + S
Sbjct: 115 VGWRPKLEIDDIVESALKDADLWDEIKH----------------------KIHKSALDLS 152
Query: 233 GGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
GG + R+ +ARAL ++P +LL+DEP LD
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 46.1 bits (110), Expect = 4e-06
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
E++ + + R L +G + ++ SGG + RV++ARA+ P LLL DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFP-EQLSGGEQQRVAIARAIVNSPPLLLADE 163
Query: 257 PTNHLD 262
PT +LD
Sbjct: 164 PTGNLD 169
Score = 29.5 bits (67), Expect = 1.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 60 IKVENFSLS-----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHI 100
I+ N S + L V I G L GP+G GKTTLL+ +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLL 48
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 46.9 bits (112), Expect = 4e-06
Identities = 51/226 (22%), Positives = 83/226 (36%), Gaps = 67/226 (29%)
Query: 38 FTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQK-QIASGRRYGLVGPNGHGKTTL 96
F ++ + V+ + +F L +V++ +I G G++GPNG GKTT
Sbjct: 328 FEEKPPRDDKARDTLVEYPDLKKTYGDFKL----EVEEGEIYDGEVIGILGPNGIGKTTF 383
Query: 97 LRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDD 156
++ +A V+ D+ + LK K + + D
Sbjct: 384 VKLLAG----------------------------VIKPDEGSEEDLKVSYKPQYISPDYD 415
Query: 157 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAG 216
V +L R G + + TE+ L ++E +L
Sbjct: 416 GTVEDLLR-------------SAIRSAFGSSYFK-TEIVKPL-NLE---------DLL-- 449
Query: 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E+ E SGG RV++A AL E L LLDEP+ +LD
Sbjct: 450 --------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
Score = 31.1 bits (71), Expect = 0.62
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ E SGG RV++A AL + + DEP+++LD
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
Score = 30.3 bits (69), Expect = 1.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 79 SGRRYGLVGPNGHGKTTLLR 98
G+ G++GPNG GK+T L+
Sbjct: 99 PGKVVGILGPNGIGKSTALK 118
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 47.0 bits (112), Expect = 4e-06
Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 57/240 (23%)
Query: 38 FTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQI--------ASGRRYGLVGPN 89
T S + R D + + + +K + G ++G +
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSS 60
Query: 90 GHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN-IVLSADKNRVKLLKECSKL 148
G GKTTL+ +A R+ + V+ S +N + + A + R + +
Sbjct: 61 GAGKTTLMNALAFRS------------PKGVKGSGSVLLNGMPIDAKEMRAI----SAYV 104
Query: 149 EQVEASDDSAVNI-VLSADKN-----RVKLLKECSKLERDESGDNQLRLTEVYDELKSIE 202
+Q + + I L+ ++ +++ + +K E+ + R+ EV L
Sbjct: 105 QQDD------LFIPTLTVREHLMFQAHLRMPRRVTKKEK------RERVDEVLQALGLR- 151
Query: 203 ADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A T+ K SGG R R++ A L +P LL DEPT+ LD
Sbjct: 152 -KCAN------------TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 46.0 bits (109), Expect = 5e-06
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 209 RARRILAGLGFTK----EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
ARR A + + SGG R RV+L RAL +P LLLDEP + LD
Sbjct: 109 NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 46.6 bits (111), Expect = 5e-06
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 223 MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+++ + SGG + RV+LARAL L+P +LL DEP ++LD
Sbjct: 129 FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
I G L+GP+G GKTT+LR +A L P+
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVA--GLEKPTE 60
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 46.2 bits (110), Expect = 5e-06
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 53/215 (24%)
Query: 60 IKVENFSL-----SPCLK-----VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 109
IK+EN + +P K V +I G GL+G G GK+TL++H+ L P+
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHL--NGLLKPT 60
Query: 110 SIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNR 169
S ++ ++ V DK VKL + K V +V +
Sbjct: 61 SGKII-------------IDGVDITDKK-VKL-SDIRK----------KVGLVFQYPEY- 94
Query: 170 VKLLKECSKLERD-ESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKE-MQEKS 227
+L +E +E+D G L L+E +E+++ R +R + +G E ++KS
Sbjct: 95 -QLFEE--TIEKDIAFGPINLGLSE--EEIEN--------RVKRAMNIVGLDYEDYKDKS 141
Query: 228 TKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E SGG + RV++A + +EP +L+LDEPT LD
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 46.2 bits (110), Expect = 5e-06
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 198 LKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEP 257
L S++ RA +L + + +K + SGG RV LARAL +EP LL+LDE
Sbjct: 119 LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178
Query: 258 TNHLD 262
++LD
Sbjct: 179 VSNLD 183
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 45.9 bits (109), Expect = 5e-06
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E SGG + RV++ARA+ PT+L+ DEPT +LD
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
Score = 28.1 bits (63), Expect = 3.7
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSS 110
LVGP+G GK+TLL+ I L P+S
Sbjct: 32 LVGPSGAGKSTLLKLIYKEEL--PTS 55
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 46.0 bits (109), Expect = 5e-06
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 39/197 (19%)
Query: 70 CLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129
C V + G G+VG +G GK+TLL +A R P Y + +
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATY-----IMRSGAELE 71
Query: 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQL 189
+ ++ R +L++ D + + +SA N + L + G+ +
Sbjct: 72 LYQLSEAERRRLMRTEWGFVHQNPRD--GLRMRVSAGANIGERLMA---IGARHYGN--I 124
Query: 190 RLTEVYDELKSIEADAA----EPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL 245
R T D L+ +E D PRA FSGG + R+ +AR L
Sbjct: 125 RATAQ-DWLEEVEIDPTRIDDLPRA--------------------FSGGMQQRLQIARNL 163
Query: 246 FLEPTLLLLDEPTNHLD 262
P L+ +DEPT LD
Sbjct: 164 VTRPRLVFMDEPTGGLD 180
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 46.5 bits (111), Expect = 5e-06
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGF-TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+L + + + RA +L +G E ++ E SGG + RV +ARAL +P +LL+D
Sbjct: 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160
Query: 256 EPTNHLD 262
EP LD
Sbjct: 161 EPFGALD 167
Score = 31.1 bits (71), Expect = 0.49
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
V++ +L I G L+GP+G GKTT L+ I
Sbjct: 17 VDDVNL--------TIEEGEFLVLIGPSGSGKTTTLKMI 47
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 46.3 bits (110), Expect = 6e-06
Identities = 47/195 (24%), Positives = 70/195 (35%), Gaps = 46/195 (23%)
Query: 70 CLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129
L + + G +G GKTTL+R IA
Sbjct: 13 SLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAG--------------------------- 45
Query: 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQL 189
+ D+ + L DS I L +K R+ + + ++L S L
Sbjct: 46 -LTRPDEGEIVLNGRTLF--------DSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96
Query: 190 RLTEVYDELKSIEADAAEPRAR--RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL 247
R Y + A +E R R++ LG + + SGG + RV++ RAL
Sbjct: 97 R----YGMKR---ARPSERRISFERVIELLGI-GHLLGRLPGRLSGGEKQRVAIGRALLS 148
Query: 248 EPTLLLLDEPTNHLD 262
P LLL+DEP LD
Sbjct: 149 SPRLLLMDEPLAALD 163
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 46.0 bits (110), Expect = 6e-06
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARAL ++P +LL+DEPT+ LD
Sbjct: 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
Score = 30.2 bits (69), Expect = 1.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 54 DDNSVDIKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLR 98
I+V + +L LK + I + L+GP+G GK+TLLR
Sbjct: 2 TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLR 51
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 46.4 bits (110), Expect = 7e-06
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 192 TEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTL 251
T + EL + +A +L +G +E + + E SGG + RV LARAL EP +
Sbjct: 92 TSLGPELLGWPEQERKEKALELLKLVGL-EEYEHRYPDELSGGMQQRVGLARALAAEPDI 150
Query: 252 LLLDEPTNHLD 262
LL+DE + LD
Sbjct: 151 LLMDEAFSALD 161
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 45.6 bits (108), Expect = 7e-06
Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 58/196 (29%)
Query: 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130
L V+ G + GP+G GK+TLL+ +A+ L P+S LL+ ++V A
Sbjct: 24 LSVRA----GEFIAITGPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDVSTLKPEAY-- 75
Query: 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLR 190
+ +V + L D
Sbjct: 76 ------------------------------------RQQVSYCAQTPALFGDT------- 92
Query: 191 LTEVYDELK---SIEADAAEP-RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF 246
V D L I + A +LA + K+ E SGG + R++L R L
Sbjct: 93 ---VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149
Query: 247 LEPTLLLLDEPTNHLD 262
P +LLLDE T+ LD
Sbjct: 150 FMPKILLLDEITSALD 165
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 46.4 bits (110), Expect = 7e-06
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132
V + G ++GP+G GK+TLL +A R ++ +L
Sbjct: 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQG------------------NNFTGTIL 128
Query: 133 SADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECS--KLERDESGDNQLR 190
+ ++ K K+ K DD +L + L CS +L + + ++
Sbjct: 129 ANNR---KPTKQILKRTGFVTQDD-----ILYPHLTVRETLVFCSLLRLPKSLTKQEKIL 180
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF----SGGWRMRVSLARALF 246
+ E +++ LG TK F SGG R RVS+A +
Sbjct: 181 VAE------------------SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222
Query: 247 LEPTLLLLDEPTNHLD 262
+ P+LL+LDEPT+ LD
Sbjct: 223 INPSLLILDEPTSGLD 238
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 46.0 bits (109), Expect = 7e-06
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 223 MQE---KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
MQE + + SGG R RV+LAR+L P LLLLDEP LD
Sbjct: 139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
Score = 29.0 bits (65), Expect = 2.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V I G + L+G +G GK+TLLR +A
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLA 66
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 45.5 bits (109), Expect = 8e-06
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
KE + + SGG + +++ARAL P LLLLDEP+
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
Score = 33.6 bits (78), Expect = 0.064
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+G NG GKTTLL+ I
Sbjct: 34 LLGRNGAGKTTLLKTIM 50
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 45.6 bits (108), Expect = 8e-06
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
D A RA ++L L K ++ SGG + RV++ARAL +EP +LL DEPT LD
Sbjct: 116 DQALARAEKLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 45.4 bits (108), Expect = 9e-06
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
RA L +G + + + SGG + RV++ARAL +P L+L DEP LD
Sbjct: 125 RALSALERVGL-ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Score = 32.7 bits (75), Expect = 0.14
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHI 100
I G ++GP+G GK+TLLR I
Sbjct: 24 NINPGEFVAIIGPSGAGKSTLLRCI 48
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 46.0 bits (110), Expect = 1e-05
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A RAR +LA LG + + S R V +ARAL + +L+LDEPT L
Sbjct: 120 KAMRRRARELLARLGLDIDPDTL-VGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177
Score = 35.9 bits (84), Expect = 0.015
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPT 258
SGG + +V LAR L +P +L+LDEPT
Sbjct: 401 TLSGGNQQKVVLARWLATDPKVLILDEPT 429
Score = 27.9 bits (63), Expect = 6.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G + L+G NG GK+TL++ ++
Sbjct: 30 TVRPGEVHALLGENGAGKSTLMKILS 55
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 45.4 bits (108), Expect = 1e-05
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 209 RARRILAGLGF-TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
RA +LA +G E ++ E SGG + RV +ARAL +P LLL+DEP LD
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Score = 31.5 bits (72), Expect = 0.35
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
V N +L IA G L+GP+G GKTT ++ I
Sbjct: 17 VNNLNLE--------IAKGEFLVLIGPSGSGKTTTMKMI 47
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 45.9 bits (109), Expect = 1e-05
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 206 AEPRARRILAGLGFT----KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
A +A L +GF +E+ +K E S G R RV+LA+ L EP +++LDEPT +
Sbjct: 399 ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458
Query: 262 D 262
D
Sbjct: 459 D 459
Score = 41.3 bits (97), Expect = 3e-04
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ SGG + RV LAR L EP L L DEPT LD
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.4 bits (107), Expect = 1e-05
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 220 TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
TK+ +++ + FSGG + R+ +ARAL + P ++LLDEPT+ LD
Sbjct: 137 TKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 45.0 bits (107), Expect = 1e-05
Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 52/190 (27%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA--VNIVLS 133
+ +G ++GP+G GK+TLL IA P+S ++L + AS + V+++
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIA--GFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTE 193
+ N L A NI L L+L
Sbjct: 79 -ENNLFAHL-------------TVAQNIGLGLSPG--------------------LKLNA 104
Query: 194 VYDELKSIEADAAEPRARRILAGL-GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLL 252
+ + +EA AA+ GL GF K + E SGG R RV+LAR L E +L
Sbjct: 105 E--QREKVEAAAAQ-------VGLAGFLKRLPG----ELSGGQRQRVALARCLVREQPIL 151
Query: 253 LLDEPTNHLD 262
LLDEP + LD
Sbjct: 152 LLDEPFSALD 161
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 45.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 199 KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
+ AE RA +L +G + + SGG + RV++ARAL + P ++L DE T
Sbjct: 116 LGMARAEAEKRAMELLDMVGLADKADHMPA-QLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 259 NHLD 262
+ LD
Sbjct: 175 SALD 178
Score = 30.6 bits (69), Expect = 0.75
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIAT 102
+A+G + L+GP+G GK+T+LR + T
Sbjct: 23 VAAGEKVALIGPSGSGKSTILRILMT 48
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 45.0 bits (107), Expect = 1e-05
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPT 250
L +YD + + R + L + + + ++ S G RMR +A AL EP
Sbjct: 119 LAAIYD----LPPARFKKRLDELSELLDLEELL-DTPVRQLSLGQRMRAEIAAALLHEPE 173
Query: 251 LLLLDEPTNHLD 262
+L LDEPT LD
Sbjct: 174 ILFLDEPTIGLD 185
Score = 31.9 bits (73), Expect = 0.25
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLR 98
I G G +GPNG GKTT L+
Sbjct: 43 TIEKGEIVGFIGPNGAGKTTTLK 65
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.1 bits (107), Expect = 1e-05
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 39/181 (21%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEASDDSAVNIVLSADKNRVKL 141
L+GP+G GK+T LR + IPS ++L Q++ SD + + RV +
Sbjct: 34 LIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL-----RKRVGM 88
Query: 142 LKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201
+ + + D+ A K++ KL DE + L+ ++DE+K
Sbjct: 89 VFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL---------DEIVEKSLKGAALWDEVKD- 138
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
R+ +KS SGG + R+ +ARAL +EP +LL+DEPT+ L
Sbjct: 139 ----------RL-----------KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177
Query: 262 D 262
D
Sbjct: 178 D 178
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 44.9 bits (107), Expect = 1e-05
Identities = 48/217 (22%), Positives = 78/217 (35%), Gaps = 55/217 (25%)
Query: 60 IKVENFSLSPCLKVQK------QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 113
I+V+N S + Q +I G ++GP+G GK+TLL R+L +D
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLL-----RSLN--GLVDP 56
Query: 114 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQ----VEASDDSAVNIVLSADKNR 169
E + + K KL ++ + Q V S + VL
Sbjct: 57 TSGEILFNGVQITKLK-----GKELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGY 109
Query: 170 VKLLKEC----SKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQE 225
+ SK ++ +A L +G + +
Sbjct: 110 TSTWRSLFGLFSKEDKA--------------------------QALDALERVGILDKAYQ 143
Query: 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV++ARAL +P ++L DEP LD
Sbjct: 144 R-ASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 44.2 bits (105), Expect = 2e-05
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 186 DNQLRLTEVYDELK--SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLAR 243
D QL V +EL E DA +A +L L ++E+ SGG + R+++A
Sbjct: 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAA 139
Query: 244 ALFLEPTLLLLDEPTNHLD 262
AL LL+ DEPT+ LD
Sbjct: 140 ALLSGKDLLIFDEPTSGLD 158
Score = 32.2 bits (74), Expect = 0.19
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 83 YGLVGPNGHGKTTLLRHIA 101
L G NG GKTTL + +A
Sbjct: 29 IALTGKNGAGKTTLAKILA 47
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 43.7 bits (104), Expect = 2e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R++ AR L +P + LDE T+ LD
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
Score = 34.1 bits (79), Expect = 0.036
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 60 IKVENFSLSP---CLKVQK---QIASGRRYGLVGPNGHGKTTLLRHIA 101
I++EN SL+ + ++ +I G R + GP+G GK++L R +A
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+ +ARAL P++L+LDE T+ LD
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALD 647
Score = 34.2 bits (79), Expect = 0.066
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+ENFSL+ + G+R LVG +G GK+T+ + +A
Sbjct: 495 IENFSLT--------LQPGQRVALVGGSGSGKSTIAKLVA 526
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 45.6 bits (108), Expect = 2e-05
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
+ AA R +L +G E + EFSGG R R+ +ARAL L P +++ DE +
Sbjct: 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493
Query: 261 LD 262
LD
Sbjct: 494 LD 495
Score = 38.3 bits (89), Expect = 0.003
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 220 TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ + + + SGG R RV +A AL P +L+ DEPT LD
Sbjct: 158 AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 44.9 bits (107), Expect = 2e-05
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 191 LTEVYDELKSIEADA-AEPRARRILAGLGFTKEMQEKSTK----EFSGGWRMRVSLARAL 245
+ EV + A+ RA +L +G E+ K E SGG R RV +A AL
Sbjct: 111 IAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--ERRLKSYPHELSGGMRQRVMIAMAL 168
Query: 246 FLEPTLLLLDEPTNHLD 262
L P LL+ DEPT LD
Sbjct: 169 ALNPKLLIADEPTTALD 185
Score = 27.5 bits (62), Expect = 7.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
V+ S + G G+VG +G GK+ L + I
Sbjct: 21 VDGVSFE--------LKKGEILGIVGESGSGKSVLAKAI 51
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
EFSGG R+ +ARAL LEP L++ DEP + LD
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 44.1 bits (105), Expect = 2e-05
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 58/216 (26%)
Query: 59 DIKVENFSLS-----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 112
+I+ EN + S P LK + I G +VGP G GKTTL+ + R P
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL-MR-FYDPQKGQ 59
Query: 113 LLYCEQEV----EASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKN 168
+L ++ S S + +VL + S NI L
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQ---------------DTFLFSGTIMENIRLGRPNA 104
Query: 169 RVKLLKECSKLERDESGDNQL--RLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEK 226
+ + E +K E+G + +L YD + E
Sbjct: 105 TDEEVIEAAK----EAGAHDFIMKLPNGYDT------------------------VLGEN 136
Query: 227 STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R +++ARA+ +P +L+LDE T+++D
Sbjct: 137 G-GNLSQGERQLLAIARAMLRDPKILILDEATSNID 171
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 44.6 bits (105), Expect = 2e-05
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 198 LKSIEADAAEPRARRILAGLGFTKEMQEK---STKEFSGGWRMRVSLARALFLEPTLLLL 254
L + D + R + L G E+++K S SGG + R+ +ARA+ EP +LLL
Sbjct: 115 LNRYKGDLGD-RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLL 173
Query: 255 DEPTNHLD 262
DEP + LD
Sbjct: 174 DEPCSALD 181
Score = 27.3 bits (60), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHI 100
I G +GP+G GK+T+LR +
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSL 54
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 44.1 bits (105), Expect = 2e-05
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV++ARA+ +P +LL DEPT +LD
Sbjct: 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Score = 27.9 bits (63), Expect = 4.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 85 LVGPNGHGKTTLLRHI 100
L GP+G GK+TLL+ I
Sbjct: 33 LTGPSGAGKSTLLKLI 48
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARAL +EP +LLLDEPT+ LD
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Score = 30.0 bits (68), Expect = 1.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHI 100
I++EN +L LK + I + L+GP+G GK+TLLR +
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.2 bits (104), Expect = 2e-05
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 37/180 (20%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
L+GP+G GK+T LR + IP + + + + +++ V+L K+
Sbjct: 36 LIGPSGCGKSTYLRTLNRMNDLIPGVT--------ITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 145 CSKLEQVEASDDSAV--NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE 202
+ Q ++ N++ R+ +K+ + L DE+ + L+ ++DE+K
Sbjct: 88 VGMVFQQPNPFPFSIYENVIYGL---RLAGVKDKAVL--DEAVETSLKQAAIWDEVK--- 139
Query: 203 ADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ +S SGG + RV +AR L ++P ++LLDEPT+ LD
Sbjct: 140 -------------------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 44.1 bits (104), Expect = 2e-05
Identities = 52/201 (25%), Positives = 78/201 (38%), Gaps = 50/201 (24%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
VE+ SL + SG GL+GPNG GKTT +
Sbjct: 19 VEDVSL--------TVNSGEIVGLLGPNGAGKTTTFYMV--------------------- 49
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLER 181
V IV D + + E D S + + A + L +E S R
Sbjct: 50 ------VGIV-PRDAGNIIIDDE----------DISLLPLHARARRGIGYLPQEASIFRR 92
Query: 182 DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSL 241
DN + + ++ D+L + + E RA ++ +++ + SGG R RV +
Sbjct: 93 LSVYDNLMAVLQIRDDLSA---EQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEI 148
Query: 242 ARALFLEPTLLLLDEPTNHLD 262
ARAL P +LLDEP +D
Sbjct: 149 ARALAANPKFILLDEPFAGVD 169
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ K SGG R RV++ R L EP++ LLDEP ++LD
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 31.9 bits (73), Expect = 0.30
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 86 VGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ---EVEASD 124
VGP+G GK+TLLR IA L +S DL E+ +V ++
Sbjct: 35 VGPSGCGKSTLLRMIA--GLEDITSGDLFIGEKRMNDVPPAE 74
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 44.7 bits (106), Expect = 3e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 201 IEADAAEPRARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
+EA A A ++ L G+ + E+ SGG R R+++ARA+ + +LLLDE T
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEAT 504
Query: 259 NHLD 262
+ LD
Sbjct: 505 SALD 508
Score = 29.3 bits (66), Expect = 2.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 77 IASGRRYGLVGPNGHGKTTLLR 98
+ G LVGP+G GK+TL +
Sbjct: 363 VRPGETVALVGPSGAGKSTLFQ 384
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 43.8 bits (104), Expect = 3e-05
Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 61/201 (30%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS---DDSAVNIVL 132
IA + +GP+G GK+TLLR R LY EQ E D NI+
Sbjct: 35 DIAKNQVTAFIGPSGCGKSTLLR-TFNRMYE-------LYPEQRAEGEILLDGE--NIL- 83
Query: 133 SADKNRVKLLKECSKLEQVEASDDSAVNIV--------LSADKN---RVKLLKECSKLER 181
K + LL+ + V +V +S N V+L ++ S+ E
Sbjct: 84 -TPKQDIALLR-------------AKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEM 129
Query: 182 DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSL 241
DE + L +++E K+ +S SGG + R+ +
Sbjct: 130 DERVEWALTKAALWNE----------------------VKDKLHQSGYSLSGGQQQRLCI 167
Query: 242 ARALFLEPTLLLLDEPTNHLD 262
AR + + P +LLLDEP + LD
Sbjct: 168 ARGIAIRPEVLLLDEPCSALD 188
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 44.4 bits (105), Expect = 3e-05
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ SGG R RV LARAL +LLLDEPT LD
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
Score = 36.4 bits (84), Expect = 0.010
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHI 100
V + G GLVGPNG GKTTLLR I
Sbjct: 22 VDLSVREGSLVGLVGPNGAGKTTLLRAI 49
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 44.2 bits (104), Expect = 3e-05
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + R+++ARA+ +EP +LLLDEP + LD
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169
Score = 32.3 bits (73), Expect = 0.26
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+I +G L+G +G GKTTLLR IA
Sbjct: 27 EIEAGELLALIGKSGCGKTTLLRAIA 52
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 44.1 bits (104), Expect = 3e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + R++LARAL +P LL+LDEPT LD
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
Score = 34.4 bits (79), Expect = 0.043
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHI 100
+ASG +GL+GPNG GK+T+ R I
Sbjct: 64 VASGECFGLLGPNGAGKSTIARMI 87
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 43.8 bits (104), Expect = 3e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALD 170
Score = 30.7 bits (70), Expect = 0.61
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 76 QIASGRRYGLVGPNGHGKTTLL 97
I +G LVGP+G GK+TL+
Sbjct: 24 DIPAGETVALVGPSGSGKSTLV 45
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 43.6 bits (103), Expect = 4e-05
Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 57/193 (29%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
I G + L+GPNG GK+TLL H+ N + +
Sbjct: 28 IPEGSKTALLGPNGAGKSTLLLHL----------------------------NGIYLPQR 59
Query: 137 NRVKLL-KECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
RVK++ +E + + +++V L+ + D+Q+ + V+
Sbjct: 60 GRVKVMGREVNAENEKWV-------------RSKVGLVFQ--------DPDDQVFSSTVW 98
Query: 196 DELK------SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
D++ ++ D E R L + + ++K S G + RV++A L ++P
Sbjct: 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157
Query: 250 TLLLLDEPTNHLD 262
+++LDEP +LD
Sbjct: 158 DVIVLDEPMAYLD 170
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 43.7 bits (103), Expect = 4e-05
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A+ A+ L +G E+S SGG + RV++A L ++P +L+ DEPT LD
Sbjct: 152 AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 42.7 bits (101), Expect = 4e-05
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ FSGG R R++LAR L + ++LLDEPT LD
Sbjct: 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 43.3 bits (103), Expect = 4e-05
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
KEM + + SGG + ++++ARAL P LLLLDEPT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
Score = 27.1 bits (61), Expect = 9.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 85 LVGPNGHGKTTLLRHI 100
++G NG GKTTLL+ +
Sbjct: 31 VLGRNGVGKTTLLKTL 46
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 44.0 bits (104), Expect = 5e-05
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 218 GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
G+ E+ EK SGG R R+++ARAL P +L+ DE T+ LD
Sbjct: 582 GYNTEVGEKGAN-LSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Score = 28.2 bits (63), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLR 98
I G G+VGP+G GK+TL +
Sbjct: 480 IKPGEFIGIVGPSGSGKSTLTK 501
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 43.2 bits (102), Expect = 5e-05
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 208 PRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
P +R+ AG MQ+ SGG RV LARAL P LL+LDEPT +D
Sbjct: 103 PALKRVQAGHLIDAPMQK-----LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
Score = 29.3 bits (66), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 80 GRRYGLVGPNGHGKTTLLR 98
G+ L+GPNG GK+TL+R
Sbjct: 30 GKILTLLGPNGAGKSTLVR 48
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 43.9 bits (103), Expect = 6e-05
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 49 KRSTVDDNSVDIKVENFSL--SPCLKVQKQIA----SGRRYGLVGPNGHGKTTLLRHIAT 102
K ++I NF P + + K + S + +VG G GK+T++ +
Sbjct: 1157 KNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM-SLLM 1215
Query: 103 RALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNR---VKLLKECSKLEQVEASDDSAV 159
R + + +++ + E ++D D+ + +K + E S ++ + +DS V
Sbjct: 1216 RFYDLKNDHHIVF---KNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272
Query: 160 -----NIVLSA----DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAE--- 207
I+L D N LK+ L S + L +Y+ +K + DA
Sbjct: 1273 FKNSGKILLDGVDICDYN----LKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDV 1328
Query: 208 PRARRILAGLGFTKEMQEKST-------KEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
RA + A F + + K K SGG + R+++ARAL EP +LLLDE T+
Sbjct: 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388
Query: 261 LD 262
LD
Sbjct: 1389 LD 1390
Score = 40.0 bits (93), Expect = 0.001
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 32/211 (15%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI------ 130
+ G+ Y VG +G GK+T+L+ I L P+ D++ + + + +N+
Sbjct: 408 LTEGKTYAFVGESGCGKSTILKLI--ERLYDPTEGDIIIND----SHNLKDINLKWWRSK 461
Query: 131 --VLSAD--------KNRVKL-LKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKL 179
V+S D KN +K L LE + + N R +C+
Sbjct: 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521
Query: 180 ERDESGD-NQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEK-------STKEF 231
D S + L E+ ++I+ ++++L F + +K + +
Sbjct: 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIH-DFVSALPDKYETLVGSNASKL 580
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+S+ARA+ P +L+LDE T+ LD
Sbjct: 581 SGGQKQRISIARAIIRNPKILILDEATSSLD 611
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 43.5 bits (103), Expect = 6e-05
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 70 CLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129
L + + L GP+G GKT+L+ IA
Sbjct: 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAG--------------------------- 46
Query: 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQL 189
+ D+ R++L +V D+ I L +K R+ + + ++L +
Sbjct: 47 -LTRPDEGRIELN------GRVLV--DAEKGIFLPPEKRRIGYVFQDARLFPHYT----- 92
Query: 190 RLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
V L+ + + +++A LG + SGG + RV++ RAL P
Sbjct: 93 ----VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-LSGGEKQRVAIGRALLTAP 147
Query: 250 TLLLLDEPTNHLD 262
LLL+DEP LD
Sbjct: 148 ELLLMDEPLASLD 160
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 42.9 bits (102), Expect = 6e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+++ARAL P +LLLDE T+ LD
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALD 171
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 43.0 bits (102), Expect = 6e-05
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV +ARAL P +LL DE T+ LD
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Score = 31.4 bits (72), Expect = 0.38
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHI 100
+ G +G++G +G GK+TL+R I
Sbjct: 28 VPKGEIFGIIGRSGAGKSTLIRCI 51
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 42.4 bits (101), Expect = 6e-05
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
KE +++ SGG + +++ARAL P LLLLDEP+
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
Score = 34.7 bits (81), Expect = 0.029
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 84 GLVGPNGHGKTTLLRHIA 101
L+G NG GKTTLL+ I
Sbjct: 30 ALLGRNGAGKTTLLKTIM 47
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 42.8 bits (101), Expect = 7e-05
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K K+FS G + R+ +A AL P LL+LDEPTN LD
Sbjct: 120 KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
Score = 35.8 bits (83), Expect = 0.013
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 17/57 (29%)
Query: 44 SKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
SK K++ V++ + + V S+ YGL+GPNG GK+TLL+ I
Sbjct: 7 SKRFGKQTAVNN--ISLTVPKNSV---------------YGLLGPNGAGKSTLLKMI 46
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 43.3 bits (102), Expect = 7e-05
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
EL + D + + +LA +G + + SGG + RV++ARAL P +LL DE
Sbjct: 108 ELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 257 PTNHLD 262
T+ LD
Sbjct: 167 ATSALD 172
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 43.3 bits (103), Expect = 7e-05
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 213 ILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
I+ L + + +K+ K+ SGG RV++A L + L LLDEP+ HLD
Sbjct: 437 IIKPLQLERLL-DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 34.0 bits (79), Expect = 0.082
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 38 FTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQK-QIASGRRYGLVGPNGHGKTTL 96
F S + + V+ + K+ +FSL +V+ +I G G+VGPNG GKTT
Sbjct: 326 FEERPPRDESERETLVEYPDLTKKLGDFSL----EVEGGEIYEGEVIGIVGPNGIGKTTF 381
Query: 97 LRHIA 101
+ +A
Sbjct: 382 AKLLA 386
Score = 32.9 bits (76), Expect = 0.19
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ E SGG RV++A AL + DEPT++LD
Sbjct: 207 DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
Score = 29.4 bits (67), Expect = 2.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 80 GRRYGLVGPNGHGKTTLLR 98
G+ G++GPNG GKTT ++
Sbjct: 99 GKVTGILGPNGIGKTTAVK 117
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 42.6 bits (101), Expect = 7e-05
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEP 257
SGG R RV +ARAL P +LLDEP
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEP 166
Score = 32.2 bits (74), Expect = 0.21
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 76 QIASGRRYGLVGPNGHGKTT 95
++ SG GL+GPNG GKTT
Sbjct: 26 EVNSGEIVGLLGPNGAGKTT 45
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 42.6 bits (100), Expect = 7e-05
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 39/181 (21%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASDDSAVNIVLSADKNRVKL 141
L+GP+G GK+T LR I IP S ++LY +NI L ++ N V L
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILY----------EGLNI-LDSNINVVNL 100
Query: 142 LKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201
+E + Q + + + + +K E K DE + L ++DE+K
Sbjct: 101 RREIGMVFQ---KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-- 155
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
+ S SGG + R+ +AR L ++P +LLLDEP + L
Sbjct: 156 --------------------DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 262 D 262
D
Sbjct: 196 D 196
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 42.5 bits (101), Expect = 7e-05
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEP 257
SGG R RV +ARAL P LLLDEP
Sbjct: 135 SGGERRRVEIARALATNPKFLLLDEP 160
Score = 31.0 bits (71), Expect = 0.44
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G GL+GPNG GKTT I
Sbjct: 22 SVKQGEIVGLLGPNGAGKTTTFYMIV 47
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 43.2 bits (102), Expect = 7e-05
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R L +G + ++ E SGG + RV LARA E +LL+DEP + LD
Sbjct: 144 RVDEQLELVGLA-QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 42.6 bits (100), Expect = 8e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+K+ SGG + R+ +AR L +EP +LLLDEPT+ LD
Sbjct: 177 DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 42.5 bits (100), Expect = 9e-05
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
D + A R+L LGF++++ +S + SGG ++++ L + P +++LDEPT LD
Sbjct: 119 DEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Score = 29.4 bits (66), Expect = 1.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHI 100
V + G+ Y +VG G GK+TL+++I
Sbjct: 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 42.1 bits (99), Expect = 1e-04
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
G+ E+ EK + + SGG + RV++ARAL P +L+LDE T+ LD
Sbjct: 138 SGYDTEVGEKGS-QLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 42.8 bits (101), Expect = 1e-04
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 218 GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
G+ E+ EK + + SGG + R+++ARAL +P +L+LDE T+ LD
Sbjct: 606 GYDTEVGEKGS-QLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Score = 28.2 bits (63), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 77 IASGRRYGLVGPNGHGKTT---LLRH 99
+ G LVGP+G GK+T LL++
Sbjct: 504 LHPGEVVALVGPSGSGKSTVAALLQN 529
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.9 bits (98), Expect = 1e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 207 EPRARRILAGLGFTKEMQEK---STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R L G E+++K S SGG + R+ +ARA+ + P++LL+DEP + LD
Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 42.3 bits (100), Expect = 1e-04
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 48/187 (25%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
++ G +GL+GPNG GKTT R I
Sbjct: 24 EVPPGEIFGLLGPNGAGKTTTFRMIL---------------------------------- 49
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
LL+ S KNR+ L E L + ++QL+
Sbjct: 50 ----GLLEPTEGEITWNGGPLSQ------EIKNRIGYLPEERGLYPKMTVEDQLKY---L 96
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
ELK + + + + L L + +K KE S G + ++ A+ EP LL+LD
Sbjct: 97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKK-IKELSKGNQQKIQFISAVIHEPELLILD 155
Query: 256 EPTNHLD 262
EP + LD
Sbjct: 156 EPFSGLD 162
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 42.7 bits (101), Expect = 1e-04
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 213 ILAGLG-FTKEMQEKS--TKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
GLG + + E+ + SGG + R++ AR L +P + LDE T+ LD
Sbjct: 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Score = 39.2 bits (92), Expect = 0.001
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNSVD--IKVENFSLSP---CLKVQK---QIASGRRYG 84
LE + A + R D++ D I +EN SL + + ++ G R
Sbjct: 364 QALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLL 423
Query: 85 LVGPNGHGKTTLLRHIA 101
+ G +G GKT+LLR +A
Sbjct: 424 ITGESGAGKTSLLRALA 440
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 42.0 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 214 LAGLGFTKEMQEK---STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
L +G KE+ ++ + SGG + R+++ARAL L+P +LL+DEPT+ +D
Sbjct: 134 LRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 41.9 bits (98), Expect = 1e-04
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKE---FSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
D E L +G +E+++K + SGG + R+ +ARAL ++P LLLLDEPT+
Sbjct: 113 DEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSA 172
Query: 261 LD 262
LD
Sbjct: 173 LD 174
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 189 LRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE 248
L EV + I D R + L ++ K S G RMR LA AL
Sbjct: 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK-LSLGQRMRAELAAALLHP 174
Query: 249 PTLLLLDEPTNHLD 262
P +L LDEPT LD
Sbjct: 175 PKVLFLDEPTVGLD 188
Score = 34.7 bits (80), Expect = 0.033
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLR 98
+I G G +G NG GK+T L+
Sbjct: 46 EIPKGEIVGFLGANGAGKSTTLK 68
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 41.7 bits (99), Expect = 1e-04
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G R GL+G NG GK+TLLR +A
Sbjct: 45 VPRGERIGLIGRNGAGKSTLLRLLA 69
Score = 30.2 bits (69), Expect = 0.74
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDE 256
K +S G + R++ A A LEP +LL+DE
Sbjct: 141 KTYSSGMKARLAFAIATALEPDILLIDE 168
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 41.4 bits (98), Expect = 2e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 224 QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ E SGG + RV+LARA+ P L+L DEPT LD
Sbjct: 128 LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLD 166
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I G+ Y ++G +G GK+TLL I
Sbjct: 21 IEKGKMYAIIGESGSGKSTLLNIIG 45
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 42.0 bits (99), Expect = 2e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL P +L+LDE T+ LD
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALD 497
Score = 27.4 bits (61), Expect = 9.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 59 DIKVEN--FSLSPCLKVQKQI----ASGRRYGLVGPNGHGKTTLLR 98
I+ EN FS V K I G + +VGP+G GK+TL++
Sbjct: 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIK 373
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 41.7 bits (98), Expect = 2e-04
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
++ + R L LG +E++++ SGG + RV++A + +EP +L+LDEPT
Sbjct: 109 LDEETVAHRVSSALHMLGL-EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
Query: 261 LD 262
LD
Sbjct: 168 LD 169
Score = 30.9 bits (70), Expect = 0.58
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 82 RYGLVGPNGHGKTTLLRH 99
R ++GPNG GK+TL RH
Sbjct: 32 RIAVIGPNGAGKSTLFRH 49
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 41.4 bits (98), Expect = 2e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
FSGG + R+ +AR L P L+ +DEPT LD
Sbjct: 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
Score = 29.9 bits (68), Expect = 0.99
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 84 GLVGPNGHGKTTLLRHIATR 103
G+VG +G GKTTLL ++ R
Sbjct: 36 GIVGESGSGKTTLLNALSAR 55
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 41.2 bits (97), Expect = 2e-04
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 191 LTEVYDELKSIEADAAEPRARRILA-GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
E L + A + A GL +E+ +K + SGG RV +A AL LEP
Sbjct: 85 AIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEP 144
Query: 250 TLLLLDEPTNHLD 262
L+ DEPT LD
Sbjct: 145 PFLIADEPTTDLD 157
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 41.3 bits (97), Expect = 2e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A+ +L LG K + + SGG + RV+LARA P +L DEPT +LD
Sbjct: 126 GAKALLEQLGLGKRLDHLPA-QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 40.9 bits (96), Expect = 2e-04
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 53/187 (28%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVNIVLSAD 135
+A+G + GPNG GKTTLLR +A L+ P + +L ++ DS A ++
Sbjct: 23 LAAGEALQVTGPNGSGKTTLLRILA--GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+K LS +N + + D Q V
Sbjct: 81 APGIK--------------------TTLSVLENL--------RFWHADHSDEQ-----VE 107
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+ L AR L G ++ + S G + RV+LAR L L +LD
Sbjct: 108 EAL-----------ARVGLNGFE------DRPVAQLSAGQQRRVALARLLLSGRPLWILD 150
Query: 256 EPTNHLD 262
EPT LD
Sbjct: 151 EPTTALD 157
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 41.3 bits (97), Expect = 2e-04
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 40/183 (21%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRV 139
G+ ++G NG GK+TL + +A + P+S ++L + + D S
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLA--GMIEPTSGEILINDHPLHFGDYSF------------ 84
Query: 140 KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK 199
++ + ++++N L ++L L + + + R ++++ L+
Sbjct: 85 ----RSKRIRMIFQDPNTSLNPRL----RIGQILDF--PLRLNTDLEPEQRRKQIFETLR 134
Query: 200 SIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTN 259
+ G + + G + RV+LARAL L P +++ DE
Sbjct: 135 MV----------------GLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALA 178
Query: 260 HLD 262
LD
Sbjct: 179 SLD 181
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 41.6 bits (97), Expect = 2e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ +K+ SGG + R+ +ARA+ LEP +LL+DEPT+ LD
Sbjct: 216 KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
LG+ E+ E+ + SGG + R++LARAL + +L+LDE T++LD
Sbjct: 599 LGYQTELSEEGSS-ISGGQKQRIALARALLTDSKVLILDESTSNLD 643
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 41.5 bits (98), Expect = 3e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E ++ + SGG + RV++ARA+ +P +LLLDE + LD
Sbjct: 136 EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Score = 31.1 bits (71), Expect = 0.52
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+GP+G GKTT+LR IA
Sbjct: 45 LLGPSGCGKTTVLRLIA 61
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 41.3 bits (98), Expect = 3e-04
Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 57/204 (27%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122
+ SL QI +G + L+G G GK+TLL+ + TRA P ++L Q +
Sbjct: 357 KGLSL--------QIKAGEKVALLGRTGCGKSTLLQLL-TRAWD-PQQGEILLNGQPIAD 406
Query: 123 SDDSAVNIVLSADKNRVKL----LKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSK 178
++A+ +S RV L L++ L ASD++ + ++ +V L K
Sbjct: 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVL-----QQVGL----EK 457
Query: 179 LERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMR 238
L D+ G N A LG + ++ SGG + R
Sbjct: 458 LLEDDKGLN---------------------------AWLG-------EGGRQLSGGEQRR 483
Query: 239 VSLARALFLEPTLLLLDEPTNHLD 262
+ +ARAL + LLLLDEPT LD
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLD 507
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 40.9 bits (96), Expect = 3e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ +S SGG + R+ +ARAL +EP +LL+DEP + LD
Sbjct: 140 KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 40.6 bits (96), Expect = 3e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + RV+LAR L + +LDEPT LD
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159
Score = 38.3 bits (90), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 124
L GPNG GKTTLLR IA L P++ + +++ D
Sbjct: 33 LTGPNGSGKTTLLRLIA--GLLPPAAGTIKLDGGDIDDPD 70
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 40.7 bits (96), Expect = 3e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV+LAR L E +LLLDEP + LD
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Score = 31.1 bits (71), Expect = 0.50
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G R ++GP+G GK+TLL IA
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIA 46
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 40.5 bits (95), Expect = 3e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL P +L+ DE T+ LD
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALD 170
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 41.4 bits (97), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+SLARA++ + L LLD P HLD
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
Score = 32.6 bits (74), Expect = 0.27
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + + LAR++ + +LLLDEP+ HLD
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 40.8 bits (96), Expect = 3e-04
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARA+ +EP +LLLDEPT+ LD
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
Score = 30.4 bits (69), Expect = 0.88
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 53 VDDNSVDIKVENFSL----SPCLK-VQKQIASGRRYGLVGPNGHGKTTLLR 98
+ D ++V N +L L + +I R +GP+G GK+TLLR
Sbjct: 19 LSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLR 69
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.6 bits (95), Expect = 3e-04
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 214 LAGLGFTKEMQEK---STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
L +G +E+ ++ S E SGG + R+ +ARA+ ++PT+LL+DEP + LD
Sbjct: 130 LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 40.9 bits (96), Expect = 3e-04
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 38/180 (21%)
Query: 86 VGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKEC 145
+GP+G GK+T+LR + IP + E EV + + + V + +
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGA----RVEGEVLLDGED----LYGPGVDPVAVRRTI 87
Query: 146 SKLEQVEASDDSAVNI---VLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE 202
+ Q + ++I V++ +KL +K + DE + LR +++E+K
Sbjct: 88 GMVFQ-RPNPFPTMSIRDNVVAG----LKLNGVRNKKDLDELVEKSLRGANLWNEVKD-- 140
Query: 203 ADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R + GL SGG + R+ +ARA+ +EP +LL+DEP + LD
Sbjct: 141 ------RLDKPGGGL--------------SGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 40.8 bits (96), Expect = 4e-04
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL------FLEPTLLLLD 255
E + E A + LA + + + + SGG + RV LAR L L LD
Sbjct: 108 EPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166
Query: 256 EPTNHLD 262
EPT+ LD
Sbjct: 167 EPTSALD 173
Score = 36.2 bits (84), Expect = 0.011
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 60 IKVENFSLSPCLK-----VQKQIASGRRYGLVGPNGHGKTTLLRHI 100
I+ EN S S + V + G ++GPNG GK+TLL+ +
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL 47
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 40.5 bits (95), Expect = 4e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
FSGG + R+ +AR L P L+ +DEPT LD
Sbjct: 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 40.2 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV +ARA+ +P +LL DEPT +LD
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.5 bits (95), Expect = 4e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 226 KSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
KS SGG + R+ +ARA+ ++P +LL+DEP + LD
Sbjct: 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 40.4 bits (94), Expect = 4e-04
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 170 VKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTK 229
V++ + + + DE ++ L+ ++ E+K + KS
Sbjct: 112 VRISAKLPQADLDEIVESALKGAALWQEVK----------------------DKLNKSAL 149
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARAL ++P +LL+DEP + LD
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 40.4 bits (95), Expect = 4e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 220 TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ ++ + SGG R R LA L + ++LLDEPT +LD
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
Score = 31.5 bits (72), Expect = 0.32
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+ + SLS + +G+ L+GPNG GK+TLL+ A
Sbjct: 18 LNDLSLS--------LPTGKITALIGPNGCGKSTLLKCFA 49
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 41.2 bits (97), Expect = 4e-04
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 45/189 (23%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
I G LVG +G GK+TL+ I R P S +L + L++ +
Sbjct: 355 IEPGETVALVGRSGSGKSTLVNLI-PR-FYEPDSGQILL-------DGHDLADYTLASLR 405
Query: 137 NRVKLLKECSKLEQVEASDDS-AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+V L+ + V +D+ A NI +++ +
Sbjct: 406 RQVALVSQ-----DVVLFNDTIANNIAYGR---------------TEQADRAE------- 438
Query: 196 DELKSIEADAAEPRARRILAGL--GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
IE A A+ + L G + E SGG R R+++ARAL + +L+
Sbjct: 439 -----IERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILI 492
Query: 254 LDEPTNHLD 262
LDE T+ LD
Sbjct: 493 LDEATSALD 501
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 40.9 bits (96), Expect = 4e-04
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
+E RA+ +L LG ++ E + SGG + RVS+ARAL ++L DEPT
Sbjct: 116 LERKQRLLRAQELLQRLGL-EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA 174
Query: 261 LD 262
LD
Sbjct: 175 LD 176
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.3 bits (94), Expect = 4e-04
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 51/189 (26%)
Query: 83 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS----DDSAVNIVLSADKNR 138
L+GP+G GK+TLLR + R + LY E V + + + R
Sbjct: 32 TALMGPSGSGKSTLLR-VFNRLIE-------LYPEARVSGEVYLDGQDIFKMDVIELRRR 83
Query: 139 VKLLKECSK----LEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV 194
V+++ + L E N+ L NR L+K SK E E L ++
Sbjct: 84 VQMVFQIPNPIPNLSIFE-------NVALGLKLNR--LVK--SKKELQERVRWALEKAQL 132
Query: 195 YDELKS-IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
+DE+K ++A A + SGG + R+ +ARAL +P +LL
Sbjct: 133 WDEVKDRLDAPAGK-----------------------LSGGQQQRLCIARALAFQPEVLL 169
Query: 254 LDEPTNHLD 262
DEPT +LD
Sbjct: 170 ADEPTANLD 178
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 40.4 bits (94), Expect = 4e-04
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLK 143
L+GP+G GK+T LR P + + E E+ D+ NI LS + + +++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGN----HYEGEIILHPDNV-NI-LSPEVDPIEVRM 99
Query: 144 ECSKLEQVEASDDSAV--NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201
S + Q ++ N+ R++ +K S LE E +N LR ++DE+K
Sbjct: 100 RISMVFQKPNPFPKSIFENVAYGL---RIRGVKRRSILE--ERVENALRNAALWDEVKDR 154
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
L L F SGG + R+ +ARAL +P +LL DEPT+ L
Sbjct: 155 ------------LGDLAFN----------LSGGQQQRLCIARALATDPEILLFDEPTSAL 192
Query: 262 D 262
D
Sbjct: 193 D 193
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 40.7 bits (96), Expect = 5e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+ +ARAL +P +LL DE T+ LD
Sbjct: 590 SGGQRQRLLIARALVRKPRILLFDEATSALD 620
Score = 31.1 bits (71), Expect = 0.62
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLR 98
QI G +VGP+G GK+TLLR
Sbjct: 475 QIEPGEFVAIVGPSGSGKSTLLR 497
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 40.7 bits (96), Expect = 5e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALD 503
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 40.6 bits (96), Expect = 5e-04
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++ RAL P LLL+DEP LD
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 39.9 bits (94), Expect = 5e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++ARA+ P +LLLDE T+ LD
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALD 169
Score = 29.1 bits (66), Expect = 1.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 60 IKVEN--FSLSPCLKVQK----QIASGRRYGLVGPNGHGKTTLLR 98
I+ EN F+ P V K I +G++ +VGP+G GK+T+LR
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILR 45
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 40.2 bits (94), Expect = 5e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +AR L +EP ++L+DEPT+ LD
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 39.8 bits (94), Expect = 5e-04
Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 45/179 (25%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLK 143
GL+G NG GKTT L+ + P+S + +A + + L
Sbjct: 32 GLLGHNGAGKTTTLKMLTG--ELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA-LFD 88
Query: 144 ECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA 203
E + E ++ A LK K E E + LR+ + D+
Sbjct: 89 ELTVRE----------HLRFYA------RLKGLPKSEIKEEVELLLRVLGLTDKAN---- 128
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K + SGG + ++SLA AL P++LLLDEPT+ LD
Sbjct: 129 ----------------------KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.0 bits (93), Expect = 5e-04
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLK 143
++GP+G GK+TLLR + R I S L E V +++ + S + + V L K
Sbjct: 34 AIIGPSGCGKSTLLRAL-NRMNDIVSGARL---EGAVLLDNEN----IYSPNLDVVNLRK 85
Query: 144 ECSKLEQVEASDDSAV--NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201
+ Q ++ N+ ++L ++ DE + LR ++DE+K
Sbjct: 86 RVGMVFQQPNPFPKSIFDNVAFGP-----RMLGTTAQSRLDEVVEKSLRQAALWDEVK-- 138
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
+ KS SGG + R+ +AR L +EP ++L+DEP + L
Sbjct: 139 --------------------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178
Query: 262 D 262
D
Sbjct: 179 D 179
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 40.9 bits (96), Expect = 6e-04
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
+EAD A+ L G G E+ EK SGG + RVSLARA++ + LLD+P +
Sbjct: 761 LEADLAQ------LGG-GLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSA 812
Query: 261 LD 262
LD
Sbjct: 813 LD 814
Score = 30.1 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLL 97
V +IA + G+VG G GK+TLL
Sbjct: 1328 GVSFRIAPREKVGIVGRTGSGKSTLL 1353
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 39.4 bits (93), Expect = 6e-04
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 87 GPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS------------AVNIVLSA 134
GPNG GKT+LLR +A LA P + ++L+ + + D + L+A
Sbjct: 34 GPNGAGKTSLLRILA--GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91
Query: 135 DKN 137
+N
Sbjct: 92 LEN 94
Score = 31.7 bits (73), Expect = 0.25
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + RV+LAR L +LDEP +D
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 39.8 bits (93), Expect = 7e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ + S + SGG + R+ +ARA+ +P ++L+DEP + LD
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 40.2 bits (95), Expect = 7e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
IE AE A RIL L + ++ +E SGG R RV++ RA+ EP + L DEP ++
Sbjct: 111 IEERVAE--AARIL-ELE---PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164
Query: 261 LD 262
LD
Sbjct: 165 LD 166
Score = 34.0 bits (79), Expect = 0.054
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+A G LVGP+G GK+TLLR +A
Sbjct: 27 VADGEFIVLVGPSGCGKSTLLRMVA 51
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 39.5 bits (92), Expect = 7e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV+LAR L +LLLDEP + LD
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
Score = 29.1 bits (65), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+A G ++GP+G GK+TLL IA
Sbjct: 21 VADGEIVAIMGPSGAGKSTLLNLIA 45
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 39.0 bits (92), Expect = 8e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
FSGG + R + + L LEP L +LDEP + LD
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136
Score = 32.5 bits (75), Expect = 0.14
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I G + L+GPNG GK+TL + I
Sbjct: 23 IKKGEVHALMGPNGSGKSTLAKTIM 47
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 38.9 bits (92), Expect = 8e-04
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R V +ARAL LL+LDEPT L
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALT 114
Score = 28.5 bits (65), Expect = 1.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G + L+G NG GK+TL++ ++
Sbjct: 22 SVRRGEVHALLGENGAGKSTLMKILS 47
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 39.5 bits (93), Expect = 8e-04
Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 44/193 (22%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ---EVEASDDSAVNIVL 132
+ G + ++GPNG GK+TL + IA +S +L+ Q E+E + + + L
Sbjct: 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81
Query: 133 SADKNRVKLLKECSKLEQ--VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLR 190
+ Q E S + + SA R R G+ L
Sbjct: 82 AF---------------QYPEEIPGVSNLEFLRSALNAR-----------RSARGEEPLD 115
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE-FSGGWRMRVSLARALFLEP 249
L + LK+ LA LG +E +S E FSGG + R + + LEP
Sbjct: 116 LLDFLKLLKA------------KLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP 163
Query: 250 TLLLLDEPTNHLD 262
L +LDE + LD
Sbjct: 164 KLAILDEIDSGLD 176
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.7 bits (93), Expect = 8e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEP 257
E SGG R +LARA+ LEP L++ DEP
Sbjct: 143 ELSGGMARRAALARAIALEPDLIMFDEP 170
Score = 29.0 bits (65), Expect = 2.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 55 DNSVDIKVENFSLSPCL---KVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
N VD++ +F+ + + G+ ++GP+G GKTTLLR I
Sbjct: 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLI 53
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 39.8 bits (94), Expect = 0.001
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R++LARAL LLLLDEPT LD
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLD 517
Score = 36.0 bits (84), Expect = 0.016
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNS-VDIKVENFS-LSPCLKV-----QKQIASGRRYGL 85
+ L F + + + N V I+ E+ LSP K + +G+R L
Sbjct: 322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIAL 381
Query: 86 VGPNGHGKTTLL 97
VGP+G GKT+LL
Sbjct: 382 VGPSGAGKTSLL 393
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 39.6 bits (92), Expect = 0.001
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
EL I A+ +A L +G + E SGG R RV LARAL + P +LL+DE
Sbjct: 132 ELAGINAEERREKALDALRQVGL-ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190
Query: 257 PTNHLD 262
+ LD
Sbjct: 191 AFSALD 196
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 39.1 bits (91), Expect = 0.001
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+SLARA++ + L LLD P +LD
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 39.7 bits (93), Expect = 0.001
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 43/209 (20%)
Query: 57 SVDIKVENF--SLSPCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 113
V+I+ + + P L+ V + G+ G+ GP G GK+TLL +L I D+
Sbjct: 315 DVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL------SL-IQRHFDV 367
Query: 114 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLL 173
E ++ D + L + ++R+ ++ + L SD A NI L + +
Sbjct: 368 --SEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL----FSDTVANNIALGRPDATQQEI 421
Query: 174 KECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSG 233
+ ++L D+ LRL + YD E+ E+ SG
Sbjct: 422 EHVARLASVH--DDILRLPQGYD------------------------TEVGERGVM-LSG 454
Query: 234 GWRMRVSLARALFLEPTLLLLDEPTNHLD 262
G + R+S+ARAL L +L+LD+ + +D
Sbjct: 455 GQKQRISIARALLLNAEILILDDALSAVD 483
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 39.0 bits (92), Expect = 0.001
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 230 EFSGGWRMRVSLARAL------FLEPTLLLLDEPTNHLD 262
+ SGG + RV LAR L P LLLDEPT+ LD
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
Score = 37.8 bits (89), Expect = 0.003
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G ++GPNG GK+TLLR ++
Sbjct: 24 TLRPGEVVAILGPNGAGKSTLLRALS 49
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.2 bits (91), Expect = 0.001
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ +KS + SGG + R+ +AR + ++P ++L+DEPT+ LD
Sbjct: 138 KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 39.1 bits (91), Expect = 0.001
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARAL P +LL+DEPT+ LD
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 39.5 bits (93), Expect = 0.001
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
A R + + G + K + S G + RV + +AL+ LL+LDEPT L
Sbjct: 116 QARARIKELSERYGLPVDPDAK-VADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171
Score = 31.0 bits (71), Expect = 0.57
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 219 FTKEMQEK----------STKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
F +E+ E+ + SGG + ++ LAR L P LL+ +PT LD
Sbjct: 382 FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 38.8 bits (90), Expect = 0.002
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 34/193 (17%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132
V I G L+GP+G GK+TLLRH++ ++
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSG----------------------------LI 54
Query: 133 SADK---NRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQL 189
+ DK + ++LL + E A D + L+ S LE G L
Sbjct: 55 TGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG--AL 112
Query: 190 RLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
T + S + RA + L +G ++ + SGG + RV++ARAL +
Sbjct: 113 GSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST-LSGGQQQRVAIARALMQQA 171
Query: 250 TLLLLDEPTNHLD 262
++L DEP LD
Sbjct: 172 KVILADEPIASLD 184
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +AR + +EP ++L+DEPT+ LD
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 38.5 bits (89), Expect = 0.002
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ + SGG + R+ +AR L +EP ++L+DEPT+ LD
Sbjct: 141 KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 38.5 bits (90), Expect = 0.002
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
D + A++ L LG K + S G + + RAL PTLL+LDEP LD
Sbjct: 375 DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
Score = 31.9 bits (73), Expect = 0.28
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K S G + L +AL EP LL+LDEP + LD
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
Score = 30.0 bits (68), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 76 QIASGRRYGLVGPNGHGKTTLL 97
Q+ G + +VGPNG GK+TLL
Sbjct: 282 QVNPGEHWQIVGPNGAGKSTLL 303
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 38.1 bits (89), Expect = 0.003
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 204 DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ E R + L +G + + K SGG + RV++A L ++P +++LDEPT+ LD
Sbjct: 112 EEVEKRVKEALKAVGM-EGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Score = 27.3 bits (61), Expect = 9.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRH 99
K +K G L+GPNG GK+TL H
Sbjct: 23 FKAEK----GEMVALLGPNGAGKSTLFLH 47
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV++ARAL P +LL DE T+ LD
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Score = 27.8 bits (63), Expect = 5.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHI 100
I +G +G++G +G GK+TL+R I
Sbjct: 27 HIPAGEIFGVIGASGAGKSTLIRCI 51
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 37.7 bits (88), Expect = 0.003
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 215 AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
GLG + ++ SGG R +SL A P +LLLDE T LD
Sbjct: 134 LGLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.3 bits (86), Expect = 0.005
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 186 DNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL 245
DN + ++ + EAD + + +A K+ + + E SGG + R+ +AR +
Sbjct: 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163
Query: 246 FLEPTLLLLDEPTNHLD 262
++P ++L+DEP + LD
Sbjct: 164 AVKPEVILMDEPASALD 180
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 37.2 bits (86), Expect = 0.005
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ +KS SGG + R+ +AR + + P ++L+DEP + LD
Sbjct: 137 KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 36.6 bits (86), Expect = 0.005
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 202 EADAAEPRARRILAGLGFTKE-------MQEKSTKE-------FSGGWRMRVSLARALFL 247
+ I AG+ + E + + S E SGG + +V LAR L
Sbjct: 62 KPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLAR 121
Query: 248 EPTLLLLDEPTNHLD 262
+P +L+LDEPT +D
Sbjct: 122 DPRVLILDEPTRGVD 136
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 36.7 bits (86), Expect = 0.005
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEP 257
SGG + R+SLARA++ + + LLD+P
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDP 154
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 36.8 bits (86), Expect = 0.005
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+I G R G++G NG GK+TLL+ IA
Sbjct: 49 EIYKGERVGIIGHNGAGKSTLLKLIA 74
Score = 27.2 bits (61), Expect = 7.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDE 256
K +S G R++ + A +EP +LLLDE
Sbjct: 146 KTYSSGMYARLAFSVATHVEPDILLLDE 173
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 37.1 bits (86), Expect = 0.006
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 186 DNQLRLTEVYDELKSIEADAAEPR------ARRILAGLGFTKEMQEKSTKEFSGGWRMRV 239
DNQ V D++ + A PR R +LA +G + + SGG + RV
Sbjct: 94 DNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRV 152
Query: 240 SLARALFLEPTLLLLDEPTNHLD 262
++A L +EP +++LDE T+ LD
Sbjct: 153 AIAGILAVEPKIIILDESTSMLD 175
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 36.5 bits (85), Expect = 0.006
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R RVS+A AL ++L D T LD
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
Score = 27.2 bits (61), Expect = 7.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
++G G G +TLL+ +A R
Sbjct: 38 VLGRPGSGCSTLLKALANR 56
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 37.3 bits (87), Expect = 0.006
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL + +L+LDE T+ LD
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 37.0 bits (86), Expect = 0.008
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++AR + P +L+LDE T+ LD
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALD 431
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 36.4 bits (85), Expect = 0.009
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLE--PT------LLLLDEPTNHLD 262
+S + SGG RV LA A+ L+ P LLLLDEP N LD
Sbjct: 121 GRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Score = 33.0 bits (76), Expect = 0.11
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
++ +G LVGPNG GK+TLL +A
Sbjct: 18 EVRAGEILHLVGPNGAGKSTLLARMA 43
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 36.9 bits (85), Expect = 0.009
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 194 VYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
+Y L+ + A+ E A + LG + ++ +SGG + ++S A AL P L+L
Sbjct: 2035 LYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093
Query: 254 LDEPTNHLD 262
LDEPT +D
Sbjct: 2094 LDEPTTGMD 2102
Score = 34.2 bits (78), Expect = 0.080
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 195 YDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLL 254
Y +LK + A+ +L G + E++ ++ SGG + ++S+A A + +++L
Sbjct: 1027 YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA-QDLSGGMQRKLSVAIAFVGDAKVVVL 1085
Query: 255 DEPTNHLD 262
DEPT+ +D
Sbjct: 1086 DEPTSGVD 1093
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ ++S SGG + R+ +ARA+ ++P ++L+DEP + LD
Sbjct: 142 KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 36.1 bits (84), Expect = 0.010
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 186 DNQLRLTEVYD------ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE---FSGGWR 236
DNQ V D E + + R + L +G M++ +E SGG +
Sbjct: 91 DNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG----MEDFLNREPHRLSGGQK 146
Query: 237 MRVSLARALFLEPTLLLLDEPTNHLD 262
RV++A L L+P +++LDE T+ LD
Sbjct: 147 QRVAIAGVLALQPDIIILDEATSMLD 172
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 36.8 bits (85), Expect = 0.011
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E+ EK SGG + RVSLARA++ + L D+P + +D
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
Score = 29.1 bits (65), Expect = 2.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R V LARAL + +L+LDE T +D
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 36.2 bits (84), Expect = 0.012
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 186 DNQLRLTEVYD------ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE---FSGGWR 236
DNQ V D E K I + + R L +G MQ+ +E SGG +
Sbjct: 91 DNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG----MQDFKEREPARLSGGQK 146
Query: 237 MRVSLARALFLEPTLLLLDEPTNHLD 262
RV++A A+ + P +++LDE T+ LD
Sbjct: 147 QRVAIAGAVAMRPKIIILDEATSMLD 172
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 36.1 bits (83), Expect = 0.012
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
E + A +A + G T + ++S SGG R R +A L E ++LLDEPT L
Sbjct: 119 EDEEAVTKAMQ---ATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174
Query: 262 D 262
D
Sbjct: 175 D 175
Score = 29.2 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+I G ++GPNG GK+TLLR ++
Sbjct: 29 EIPDGHFTAIIGPNGCGKSTLLRTLS 54
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.4 bits (84), Expect = 0.013
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 46/193 (23%)
Query: 73 VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI-- 130
V + +G+ +VGP G GKTTL I+LL Q V + I
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTL--------------INLL---QRVYDPTVGQILIDG 396
Query: 131 VLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLR 190
+ R L K + + Q D N + ++E +L R+ + D
Sbjct: 397 IDINTVTRESLRKSIATVFQ----DAGLFN----------RSIRENIRLGREGATDE--- 439
Query: 191 LTEVYDELKSIEA-DAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
EVY+ K+ A D R+ G+ + E+ + SGG R R+++ARA+
Sbjct: 440 --EVYEAAKAAAAHDFILKRSN------GYDTLVGERGNR-LSGGERQRLAIARAILKNA 490
Query: 250 TLLLLDEPTNHLD 262
+L+LDE T+ LD
Sbjct: 491 PILVLDEATSALD 503
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 35.8 bits (83), Expect = 0.013
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ E SGG RV++A L + + LLDEP+ +LD
Sbjct: 110 DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
Score = 29.7 bits (67), Expect = 1.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 84 GLVGPNGHGKTTLLRHIATR----ALAIPSSIDLL-YCEQEVEASDDSAVNIVLS 133
G++GPNG GKTT ++ +A I +D + Y Q ++A + V +LS
Sbjct: 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 35.0 bits (80), Expect = 0.013
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 79 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 116
G +VGP G GKTTL R +A P ++Y
Sbjct: 1 PGEVILIVGPPGSGKTTLARALA--RELGPPGGGVIYI 36
Score = 30.0 bits (67), Expect = 0.65
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 212 RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SG R+R++LA A L+P +L+LDE T+ LD
Sbjct: 42 LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLD 92
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 36.0 bits (83), Expect = 0.013
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ S SGG + R+ +AR L + P ++L+DEP + LD
Sbjct: 140 KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 36.1 bits (84), Expect = 0.013
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + + LA+ L L P +L+LDEPT +D
Sbjct: 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
Score = 28.4 bits (64), Expect = 4.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
RA+++LA L G + V +A+AL + LL+LDEPT L
Sbjct: 123 RAQKLLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 35.8 bits (82), Expect = 0.014
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ S SGG + + LAR L + P +LLLDEPT+ LD
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 35.9 bits (83), Expect = 0.014
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +ARA+ + P ++L+DEP + LD
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 35.8 bits (82), Expect = 0.015
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +AR L ++P ++L DEPT+ LD
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Score = 27.7 bits (61), Expect = 6.2
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 60 IKVENFSL----SPCLK-VQKQIASGRRYGLVGPNGHGKTTLLR 98
IKVEN +L LK V QI L+GP+G GK+T +R
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIR 56
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 36.2 bits (84), Expect = 0.015
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R RR L + F Q T SGG + +V +A+ L P LL++DEPT +D
Sbjct: 385 RYRRAL-NIKFNHAEQAART--LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 35.0 bits (81), Expect = 0.018
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + R++LAR L +LDEPT LD
Sbjct: 129 SAGQQRRLALARLWLSRAPLWILDEPTTALD 159
Score = 35.0 bits (81), Expect = 0.021
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ +G + GPNG GKTTLLR +A
Sbjct: 23 LNAGEALQVTGPNGIGKTTLLRILA 47
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 35.5 bits (82), Expect = 0.018
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 222 EMQEKSTKE---FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+M E++ E SGG + RV++A L L P++++LDE T+ LD
Sbjct: 131 DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 34.6 bits (80), Expect = 0.021
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 216 GLGFTKEMQEKSTKEFSGGWRMRVSLARALF--LEPTLLLLDEPTNHLD 262
GLG+ Q+ ST SGG RV LA LF TL +LDEP+ L
Sbjct: 75 GLGYLTLGQKLST--LSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 35.2 bits (81), Expect = 0.022
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+ +AR L ++P ++L+DEP + LD
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALD 232
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.5 bits (82), Expect = 0.022
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG RV +A A+ P LL+ DEPT LD
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 35.0 bits (80), Expect = 0.023
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+ +ARAL+ ++ LD+P + LD
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 34.9 bits (80), Expect = 0.026
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E + + E SGG + RV LARA+ + ++LLDEP +D
Sbjct: 134 EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 34.8 bits (81), Expect = 0.029
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R + LARAL + +L+LDE T +D
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVD 171
Score = 30.5 bits (70), Expect = 0.64
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 59 DIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLL 97
DI+ +N SL P LK + I G + G+VG G GK++LL
Sbjct: 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL 47
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 34.8 bits (80), Expect = 0.030
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K+ +S SGG + R+ +AR + +EP ++L+DEP + LD
Sbjct: 145 KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
Score = 29.0 bits (65), Expect = 2.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 47 SSKRSTVDDNSVDIKVENFSLS-----PCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
S K + ++ I ++N ++S V I G+ L+GP+G GK+T+LR +
Sbjct: 1 SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 35.0 bits (81), Expect = 0.034
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 224 QEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E++ SGG + +V++AR L P +L+LDEPT +D
Sbjct: 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 34.5 bits (80), Expect = 0.035
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 205 AAEPRARRIL-----AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE---PTLLLLDE 256
P+ R L GLG+ K Q +T SGG R+ LA+ L TL +LDE
Sbjct: 141 ENIPKIARKLQTLCDVGLGYIKLGQPATT--LSGGEAQRIKLAKELSKRSTGKTLYILDE 198
Query: 257 PTNHL 261
PT L
Sbjct: 199 PTTGL 203
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 34.6 bits (79), Expect = 0.042
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R R LA +G K + +S K SGG V+LA L +EP L+ DE T+ LD
Sbjct: 116 RVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168
Score = 27.3 bits (60), Expect = 7.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 60 IKVENFSLS-----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHI 100
I++EN S S P L+ + I G G++G NG GK+TL H+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHL 48
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 33.8 bits (78), Expect = 0.045
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ +G + GPNG GKTTLLR +A
Sbjct: 25 LNAGEALQITGPNGAGKTTLLRILA 49
Score = 33.0 bits (76), Expect = 0.095
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + RV+LAR L +LDEP LD
Sbjct: 132 SAGQQRRVALARLWLSPAPLWILDEPFTALD 162
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 34.2 bits (78), Expect = 0.051
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 205 AAEPRARRILAGLGF--TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
RR+ L + + + + S G + RV++A AL L+ LLLDEPT LD
Sbjct: 109 PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 34.5 bits (80), Expect = 0.051
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 205 AAEPRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE-----PTLLLL 254
A P+ R L GLG+ K Q +T SGG RV LA+ L TL +L
Sbjct: 794 EAIPKIARKLQTLVDVGLGYIKLGQPATT--LSGGEAQRVKLAK--ELSKRSTGKTLYIL 849
Query: 255 DEPT 258
DEPT
Sbjct: 850 DEPT 853
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 34.4 bits (79), Expect = 0.057
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + + LA+ L P +L+LDEPT +D
Sbjct: 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
Score = 32.5 bits (74), Expect = 0.19
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 46/195 (23%)
Query: 70 CLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS---DDS 126
L+V+ G GL G NG GK+TL++ ++ ++ + ++AS D
Sbjct: 21 DLEVR----PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 127 AVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGD 186
IV+ + L+ E S E + ++ + A + L R
Sbjct: 77 RAGIVII--HQELTLVPELSVAENIFLGNEITLPGGRMAYN---AMYLRAKNLLR----- 126
Query: 187 NQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF 246
+L+L A+ R + ++ GG + V +A+AL
Sbjct: 127 -ELQLD-------------ADNVTRPVG---------------DYGGGQQQLVEIAKALN 157
Query: 247 LEPTLLLLDEPTNHL 261
+ LL+LDEP++ L
Sbjct: 158 KQARLLILDEPSSSL 172
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 33.8 bits (77), Expect = 0.063
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 221 KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ ++S E SGG + RV+LA + ++ L+LDEPT LD
Sbjct: 141 EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 33.3 bits (76), Expect = 0.071
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG RV++A AL T L DEP+ +LD
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
Score = 30.2 bits (68), Expect = 0.67
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G G+VGPNG GKTT ++ +A
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILA 46
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 33.0 bits (76), Expect = 0.096
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 236 RMRVSLARALFLEPTLLLLDEPTNHLD 262
R R+++ L +P++L LDEPT+ LD
Sbjct: 114 RKRLTIGVELAAKPSILFLDEPTSGLD 140
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
L+G +G GKTTLL +A R
Sbjct: 38 LMGESGAGKTTLLDVLAGR 56
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 33.3 bits (76), Expect = 0.098
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPT 258
SGG + +++ RAL +P LLLLDEP+
Sbjct: 139 SGGEQQMLAIGRALMSQPRLLLLDEPS 165
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 33.0 bits (76), Expect = 0.10
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ ++ E SGG R R +A L + +LLDEP N+LD
Sbjct: 127 DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Score = 31.1 bits (71), Expect = 0.40
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 18/71 (25%)
Query: 39 TVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLR 98
T+ SK+ + +DD S+DI + I S ++GPNG GK+TLL
Sbjct: 3 TIENVSKSYGTKVVLDDVSLDIP------------KGGITS-----IIGPNGAGKSTLLS 45
Query: 99 HIATRALAIPS 109
+ +R L S
Sbjct: 46 -MMSRLLKKDS 55
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 32.7 bits (75), Expect = 0.14
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 220 TKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ +K + SGG + RV++A L L P +++ DE T+ LD
Sbjct: 132 MEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Score = 27.3 bits (61), Expect = 7.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 54 DDNSVDIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTL 96
+ SV IKVEN S S LK V +I G ++G NG GK+T+
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTI 51
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 32.1 bits (73), Expect = 0.14
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
L GP G GKTTL R IA + L +E + + + L E
Sbjct: 24 LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA--ELFGHFLVRLLFELAE 81
Query: 145 CSKL 148
+K
Sbjct: 82 KAKP 85
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 32.5 bits (74), Expect = 0.14
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 229 KEFSGGWRMRVSLARALFLEPT-LLLLDEPTNHLD 262
++ S G + R++LAR L+L P L LLDEP +LD
Sbjct: 136 RQLSAGQKKRLALAR-LWLSPAPLWLLDEPYANLD 169
Score = 29.0 bits (65), Expect = 1.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 87 GPNGHGKTTLLRHIA 101
G NG GKTTLLR +A
Sbjct: 44 GDNGAGKTTLLRVLA 58
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.2 bits (76), Expect = 0.14
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RVS+ARA++ + + D+P + LD
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Score = 33.2 bits (76), Expect = 0.17
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 217 LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
LG E+ E + + FS G R +SLARAL +L+LDE T +D
Sbjct: 1362 LGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 31.9 bits (73), Expect = 0.16
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
L G G GKTTLL+ IA
Sbjct: 5 LQGEAGSGKTTLLQKIAL 22
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 32.4 bits (74), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R + LARAL P +L+LDE T +D
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASID 157
Score = 28.9 bits (65), Expect = 2.1
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 59 DIKVENFS------LSPCLK-VQKQIASGRRYGLVGPNGHGKTTL 96
+I+VEN S L P LK V ++ +G + G+VG G GK+TL
Sbjct: 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL 50
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 32.5 bits (74), Expect = 0.18
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 80 GRRYGLVGPNGHGKTTLL----RHIATRALAIPSSIDLLYCEQEVEASDDSA 127
G+ GL+G NG GK+TLL RH PS ++L Q +E+ A
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQP------PSEGEILLDAQPLESWSSKA 82
Score = 30.9 bits (70), Expect = 0.48
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R +A + + LLLDEPT+ LD
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 32.4 bits (73), Expect = 0.18
Identities = 40/222 (18%), Positives = 68/222 (30%), Gaps = 43/222 (19%)
Query: 84 GLVGPNGHGKTTLL----------RHIATRALAIPSSIDLLYC-----------EQEVEA 122
++GPNG GK+ LL T + I LL E E+E
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIEE 62
Query: 123 SDDSAVNIVLSADKNRVKLLKEC-----------SKLEQVEASDDSAVNIVLSADKNRVK 171
+ + ++ +L+E + E+ + S + + R
Sbjct: 63 FLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRGLREV 122
Query: 172 LLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT--------KEM 223
LL L + L + I + R + +
Sbjct: 123 LLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRL 182
Query: 224 QEKSTKEFSGGWRMRVSLARALFL---EPTLLLLDEPTNHLD 262
+ K S G + ++L AL + +LLL+DEP N L
Sbjct: 183 LKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLH 224
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 32.4 bits (74), Expect = 0.19
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E SGG R+ +A AL E ++ DEPT LD
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 32.8 bits (75), Expect = 0.19
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + +V + R L +P +L+LDEPT +D
Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 32.5 bits (74), Expect = 0.20
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 205 AAEPRARRILAGL---GFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
E R ++I+ L G + + G + R+ LARAL L P +++ DE L
Sbjct: 121 EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL 180
Query: 262 D 262
D
Sbjct: 181 D 181
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 32.6 bits (74), Expect = 0.22
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ FS G R +SLARAL +L+LDE T +D
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
Score = 31.9 bits (72), Expect = 0.35
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RVS+ARA++ + + D+P + LD
Sbjct: 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 32.0 bits (73), Expect = 0.23
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++A L + P ++ DEPT LD
Sbjct: 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Score = 29.3 bits (66), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
V ++ G ++G NG GK+T+ +H+ AL IPS
Sbjct: 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHM--NALLIPSE 64
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 32.3 bits (74), Expect = 0.24
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 205 AAEPRARRIL-----AGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLE---PTLLLLDE 256
A P R L GLG+ + Q +T SGG R+ LA+ L TL +LDE
Sbjct: 801 EAVPSISRKLQTLCDVGLGYIRLGQPATT--LSGGEAQRIKLAKELSKRSTGRTLYILDE 858
Query: 257 PTN--HLD 262
PT H D
Sbjct: 859 PTTGLHFD 866
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 32.5 bits (74), Expect = 0.27
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFL--- 247
+ E + LK I+ P I GLG+ Q S+ S ++ + +A+ L+L
Sbjct: 1666 VAETFPFLKKIQK----PLQALIDNGLGYLPLGQNLSS--LSLSEKIAIKIAKFLYLPPK 1719
Query: 248 EPTLLLLDEPTNHLD 262
PTL LLDE LD
Sbjct: 1720 HPTLFLLDEIATSLD 1734
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 31.7 bits (72), Expect = 0.28
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 9/45 (20%)
Query: 226 KSTKEFSGGWRMRVSLARALFLEPT--------LLLLDEPTNHLD 262
+ST + SGG RV LA A+ L+ T LLLLDEP N LD
Sbjct: 121 RSTNQLSGGEWQRVRLA-AVVLQITPDANPAGQLLLLDEPMNSLD 164
Score = 31.7 bits (72), Expect = 0.29
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 53 VDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
++D + ++ S ++ +G LVGPNG GK+TLL +A
Sbjct: 6 LNDVAESTRLGPLSG--------EVRAGEILHLVGPNGAGKSTLLARMA 46
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 31.8 bits (72), Expect = 0.36
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 10/136 (7%)
Query: 85 LVGPNGHGKTTLLRHIATRALA--IPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLL 142
+VGPNG GKTT+L AL I I L + ++E DD + I+ ++ +
Sbjct: 29 IVGPNGSGKTTVLD-AIRNALNKFIDFFIYLRFKSLKIE-LDDIELCIMSQSNPTVAVAV 86
Query: 143 KECSKLEQVEASDDSAVNIVLSADKNRVKL--LKECSKLERDE--SGDNQLRLTEVY--D 196
E ++ N L DK L L ++ D N L L Y
Sbjct: 87 VEYENDKKRTWVLTKNKNKELDVDKVDEILNKLGILMNIDSDPILKSYNHLPLLAYYGTK 146
Query: 197 ELKSIEADAAEPRARR 212
L + A+ R
Sbjct: 147 RLWLHKRKHAKSDFLR 162
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 31.3 bits (71), Expect = 0.40
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I GR L+G NG GK+TLL+ +A
Sbjct: 24 IEPGRVTALLGRNGAGKSTLLKALA 48
Score = 30.6 bits (69), Expect = 0.66
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 232 SGGWRMRVSLARAL---------FLEPTLLLLDEPTNHLD 262
SGG RV AR L P LLLDEPT LD
Sbjct: 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 31.2 bits (70), Expect = 0.41
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ + + SGG + RV++A + L P +++LDE T+ LD
Sbjct: 132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 31.6 bits (72), Expect = 0.44
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 21/113 (18%)
Query: 18 KYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL---SPCLKVQ 74
K + SG +G ++S R V+ IK EN L + + ++
Sbjct: 419 KRPRVEEIESGREG---------GRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIE 469
Query: 75 K---QIASGRRYGLVGPNGHGKTTLLRHIA----TRA--LAIPSSIDLLYCEQ 118
++ SG + GPNG GK++L R + L P+ L Y Q
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQ 522
Score = 29.7 bits (67), Expect = 1.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTN 259
SGG + R+++AR + +P +LDE T+
Sbjct: 582 VLSGGEKQRIAMARLFYHKPQFAILDECTS 611
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 30.7 bits (70), Expect = 0.51
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAI 107
G++G HGKTTL + + AI
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAI 26
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 31.3 bits (71), Expect = 0.52
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
++ E SGG + +V +++ L P +++ DEPT +D
Sbjct: 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 31.0 bits (70), Expect = 0.58
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + + LAR++ + +LLLDEP+ HLD
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
Score = 27.9 bits (62), Expect = 5.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 8/36 (22%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLL 97
+EN S S I+ G+R GL+G G GK+TLL
Sbjct: 20 LENISFS--------ISPGQRVGLLGRTGSGKSTLL 47
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 30.3 bits (69), Expect = 0.63
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 82 RYGLVGPNGHGKTTLLRHI 100
L G G GKTTLL H+
Sbjct: 2 VTVLTGFLGSGKTTLLEHL 20
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728) [Cellular processes,
Other].
Length = 262
Score = 30.5 bits (69), Expect = 0.68
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 79 SGRRYGLVGPNGHGKTTLLRHIA 101
SG L GP G GKTTL H+A
Sbjct: 20 SGYPVHLRGPAGTGKTTLAMHVA 42
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 30.9 bits (70), Expect = 0.77
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 78 ASGRRYGLVGPNGHGKTTLLRHIATRALA 106
A G LVGP G GKTT +A R +A
Sbjct: 183 AQGGVLALVGPTGVGKTTTTAKLAARCVA 211
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 30.1 bits (69), Expect = 0.83
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I G+R G+ G +G GKT LL IA
Sbjct: 12 IGKGQRIGIFGGSGTGKTVLLGMIA 36
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 29.9 bits (68), Expect = 0.87
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 232 SGGWRM------RVSLARALFLEPTLLLLDEPTNHLD 262
SGG ++ R++LA +L LDEPT +LD
Sbjct: 117 SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153
Score = 27.6 bits (62), Expect = 6.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 85 LVGPNGHGKTTLL 97
+VG NG GKTT++
Sbjct: 27 IVGQNGAGKTTII 39
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 30.6 bits (69), Expect = 0.89
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 166 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKE-MQ 224
D +V++ K + + + + L+S D A IL G + +
Sbjct: 444 DSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNA--AVEILNRAGLSDAVLY 501
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ E S G + R LA+ L P +LL+DE HLD
Sbjct: 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539
Score = 28.3 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIP 108
I G +VG +G GKTTLLR I
Sbjct: 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 30.6 bits (70), Expect = 0.91
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
AR L LG + K S G R V +A+AL ++ DEPT+ L
Sbjct: 120 EAREQLEHLGVDIDPDTP-LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL 171
Score = 28.7 bits (65), Expect = 3.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 80 GRRYGLVGPNGHGKTTLLR 98
G+ + L+G NG GK+TLL+
Sbjct: 30 GQVHALMGENGAGKSTLLK 48
Score = 28.0 bits (63), Expect = 5.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + + L R L + ++LLDEPT +D
Sbjct: 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 30.0 bits (68), Expect = 0.95
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 78 ASGRRYGLVGPNGHGKTTLLRHIA 101
G+ GLVGPNG GK+T L+ +A
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILA 47
Score = 28.9 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 225 EKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+++ + SGG RV++A AL + DEP+++LD
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate
synthase; Provisional.
Length = 488
Score = 30.3 bits (68), Expect = 0.99
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
LVG G GK+T+ + + + L + ID+ ++E+E + +V + D LKE
Sbjct: 5 LVGMMGSGKSTIGKRV-SEVLDLQ-FIDM---DEEIERREGRSVRRIFEEDGEEYFRLKE 59
Query: 145 CSKLEQVEASDDSAV----NIVLSADKNRVKLLKE 175
L ++ D+ V +V+ +NR L KE
Sbjct: 60 KELLRELVERDNVVVATGGGVVIDP-ENRELLKKE 93
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 30.2 bits (68), Expect = 1.1
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 28/95 (29%)
Query: 4 KLSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVE 63
KL K + + + L EL N + DN
Sbjct: 301 KLELAPYKADFPRPQAFPDWKTL-------ELRNVRFAY-----------QDN------- 335
Query: 64 NFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLR 98
F + P + I G L+G NG GK+TL
Sbjct: 336 AFHVGP---INLTIKRGELVFLIGGNGSGKSTLAM 367
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 29.3 bits (66), Expect = 1.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRALA 106
+VGP GKTTL+R +
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYLKR 26
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 30.3 bits (68), Expect = 1.1
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122
E F+L P + +IA G +VG NG GK+TL + L IP ++L V
Sbjct: 354 EGFALGP---IDLRIAQGDIVFIVGENGCGKSTLAKLFC--GLYIPQEGEILLDGAAV-- 406
Query: 123 SDDS 126
S DS
Sbjct: 407 SADS 410
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 30.0 bits (68), Expect = 1.2
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 206 AEPRAR--RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPT 258
AE R R +LA +G E S G + + + L +P LLLLDEP
Sbjct: 122 AEERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 29.3 bits (66), Expect = 1.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 85 LVGPNGHGKTTLLRHIA 101
+ GPNG GK+T+L I
Sbjct: 26 ITGPNGSGKSTILDAIG 42
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.9 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 83 YGLVGPNGHGKTTLLRHIATRALAI 107
LVG +G GKTTL + AI
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI 26
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 30.0 bits (69), Expect = 1.2
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 200 SIEADAAE-----PRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
++E +A E P+ R L GLG+ K Q +T SGG RV LA+ L
Sbjct: 793 TVE-EALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATT--LSGGEAQRVKLAKELSKRS 849
Query: 250 T---LLLLDEPT 258
T L +LDEPT
Sbjct: 850 TGKTLYILDEPT 861
>gnl|CDD|223873 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 29.1 bits (66), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSI 111
L G G GKTTL+R IA + L + ++
Sbjct: 30 LSGDLGAGKTTLVRGIA-KGLGVDGNV 55
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
E + G +V +A AL +P LL+ DEPTN ++
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSME 190
>gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain.
Length = 73
Score = 27.7 bits (62), Expect = 1.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSI 111
+ G G GKT I R LA S+
Sbjct: 15 VDGGPGTGKTATAAAIIARLLAAGRSV 41
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.4 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 85 LVGPNGHGKTTLLRHIATRAL 105
L GP G GK+TL +++A L
Sbjct: 3 LYGPPGCGKSTLAKYLARALL 23
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 29.7 bits (68), Expect = 1.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 85 LVGPNGHGKTTLL 97
LVG NG GKT LL
Sbjct: 28 LVGENGQGKTNLL 40
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 29.8 bits (67), Expect = 1.6
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 23/94 (24%)
Query: 170 VKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGL-GFTKEMQEKST 228
++L KE SK E+ D + L E+ D LK DA + GL G T E+
Sbjct: 980 LRLPKEVSKEEKMMFVDEVMELVEL-DNLK----DA--------IVGLPGVTGLSTEQ-- 1024
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
R R+++A L P+++ +DEPT+ LD
Sbjct: 1025 -------RKRLTIAVELVANPSIIFMDEPTSGLD 1051
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 29.1 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 116
L GP+G GKT+LLR + L D
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCDQAER 60
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 29.4 bits (67), Expect = 1.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 85 LVGPNGHGKTTLL 97
++GPNG GKTT++
Sbjct: 33 IIGPNGAGKTTMM 45
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic
MutS6 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 218
Score = 29.3 bits (66), Expect = 1.8
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 68 SPCLKVQKQIAS-------GRRYG----LVGPNGHGKTTLLRHIA 101
PCL + G L GPN GK+TLLR +
Sbjct: 7 HPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVC 51
>gnl|CDD|185755 cd09216, GH64-LPHase-like, glycoside hydrolase family 64:
laminaripentaose-producing, beta-1,3-glucanase
(LPHase)-like. This subfamily is represented by the
laminaripentaose-producing, beta-1,3-glucanase (LPHase)
of Streptomyces matensis and related bacterial and
ascomycete proteins. LPHase is a member of glycoside
hydrolase family 64 (GH64), it is an inverting enzyme
involved in the cleavage of long-chain polysaccharide
beta-1,3-glucans, into specific pentasaccharide
oligomers. LPHase is a two-domain crescent fold
structure: one domain is composed of 10 beta-strands,
eight coming from the N-terminus of the protein and two
from the C-terminal region, and the protein has a second
inserted domain; this cd includes both domains. This
protein has an electronegative, substrate-binding cleft,
and conserved Glu and Asp residues involved in the
cleavage of the beta-1,3-glucan, laminarin, a plant and
fungal cell wall component. Among bacteria, many
beta-1,3-glucanases are implicated in fungal cell wall
degradation. Also included in this family is GluB , the
beta-1,3-glucanase B from Lysobacter enzymogenes Strain
N4-7. Recombinant GluB demonstrated higher relative
activity toward the branched-chain beta-1,3 glucan
substrate zymosan A than toward linear beta-1,3 glucan
substrates. Sometimes these two domains are found
associated with other domains such as in the
Catenulispora acidiphila DSM 44928 carbohydrate binding
family 6 protein in which they are positioned N-terminal
of a carbohydrate binding module, family 6 (CBM_6)
domain. In the Cellulosimicrobium cellulans, glucan
endo-1,3-beta-glucosidase, they are positioned
N-terminal of a RICIN, carbohydrate-binding domain.
Length = 353
Score = 29.3 bits (66), Expect = 1.9
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS---A 127
L V G G V G A A PS+ D+L+C+ + A +D
Sbjct: 220 LTVTTFSDGGTFTGRV----SGDWLRFTGGNVAAFAKPSTRDVLFCDGALAAPNDGVTGP 275
Query: 128 VNIVLSADKNRVKLL 142
+ L A NR LL
Sbjct: 276 IAATLGAAFNRTTLL 290
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 29.3 bits (66), Expect = 2.0
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 85 LVGPNGHGKTTLLRHIATRALA 106
+VGP+G GK+TLL+ +A R LA
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLA 27
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with
the signal sequence when it emerges from the ribosome.
SRP54 of the signal recognition particle has a
three-domain structure: an N-terminal helical bundle
domain, a GTPase domain, and the M-domain that binds
the 7s RNA and also binds the signal sequence. The
extreme C-terminal region is glycine-rich and lower in
complexity and poorly conserved between species. The
GTPase domain is evolutionary related to P-loop NTPase
domains found in a variety of other proteins.
Length = 197
Score = 28.9 bits (66), Expect = 2.0
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 85 LVGPNGHGKTT 95
LVGPNG GKTT
Sbjct: 6 LVGPNGVGKTT 16
>gnl|CDD|220642 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein
3. This is a family of conserved proteins which were
originally described as death-associated-protein-3
(DAP-3). The proteins carry a P-loop DNA-binding motif,
and induce apoptosis. DAP3 has been shown to be a
pro-apoptotic factor in the mitochondrial matrix and to
be crucial for mitochondrial biogenesis and so has also
been designated as MRP-S29 (mitochondrial ribosomal
protein subunit 29).
Length = 274
Score = 29.1 bits (66), Expect = 2.1
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 71 LKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL 105
LK R+ L G G GK+ LL A
Sbjct: 14 LKEADASKKVVRFVLTGERGSGKSVLLAQAMAYAF 48
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 29.2 bits (66), Expect = 2.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 202 EADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEP 257
E++A + RA L +G E + + G + R+ +AR + +P +L+LDEP
Sbjct: 127 ESEALD-RAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180
>gnl|CDD|235878 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 29.2 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 12/46 (26%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRALA------------IPSSIDLL 114
RY L G G GK+T+L+ IA A P S+D++
Sbjct: 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMV 260
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 76 QIASGRRYG----LVGPNGHGKTTLLRHIA 101
++ G R G L G GKTT LR A
Sbjct: 22 KLTKGLRKGELIILTAGTGVGKTTFLREYA 51
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRAL 105
I G Y L+GP G GKTT +A RA+
Sbjct: 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV 216
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRALA 106
+R+ L G G GKTTLL +A A
Sbjct: 10 KRFILTGGPGAGKTTLLAALARAGFA 35
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 29.3 bits (66), Expect = 2.4
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 236 RMRVSLARALFLEPTLLL-LDEPTNHLD 262
R R+++ L +P LLL LDEPT+ LD
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLD 934
Score = 29.3 bits (66), Expect = 2.4
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 206 AEPRARRILAGLGFTKEMQEKSTKEF----SGGWRMRVSLARALFLEPTLLLLDEPTNHL 261
A+ A +A G + K +F SGG R RVS+A A + D T L
Sbjct: 181 AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGL 240
Query: 262 D 262
D
Sbjct: 241 D 241
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 85 LVGPNGHGKTTLLRHIA 101
+ GPN GK+T LR I
Sbjct: 34 ITGPNMGGKSTYLRSIG 50
>gnl|CDD|220422 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 29.1 bits (66), Expect = 2.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 86 VGPNGHGKTTLLRHIA 101
VG HGK+TLL +
Sbjct: 249 VGGGYHGKSTLLEALE 264
>gnl|CDD|233051 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 365
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 85 LVGPNGHGKTTLLRHIATRALA 106
+VGPNG GKT LL I AL
Sbjct: 28 IVGPNGQGKTNLLEAIYYLALG 49
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 26.8 bits (60), Expect = 2.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
L GP+G GK+TL+ I T
Sbjct: 26 LTGPSGSGKSTLIDAIQT 43
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L G +G GKTTLLR +A
Sbjct: 9 LTGESGSGKTTLLRRLA 25
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 29.0 bits (65), Expect = 2.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 209 RARRILAGLGFT--KEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
RA +L +G K+ E + G +V +A AL +P LL+ DEPTN ++
Sbjct: 135 RAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAME 190
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 28.9 bits (65), Expect = 2.8
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALA 106
+E + + + +VGP GK+TL ++A + LA
Sbjct: 56 LEEIADTWE-SKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLA 99
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 28.6 bits (64), Expect = 3.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
FSGG + R + + LEP L +LDE + LD
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
Score = 27.8 bits (62), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATR 103
++ G + ++GPNG GK+TL +A R
Sbjct: 23 EVRPGEVHAIMGPNGSGKSTLSATLAGR 50
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.
Length = 318
Score = 28.5 bits (64), Expect = 3.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 85 LVGPNGHGKTTLLRHI 100
L G G GKTTLLRHI
Sbjct: 9 LTGFLGAGKTTLLRHI 24
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 27.9 bits (63), Expect = 3.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 82 RYGLVGPNGHGKTTLLRHIATR 103
R + G GKTTLL +A R
Sbjct: 1 RIVITGGPSTGKTTLLEALAAR 22
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 28.3 bits (64), Expect = 3.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 73 VQKQIASGRRY-GLVGPNGHGKTTLLRHIA 101
V+ + SG R + GP G GKTT L+
Sbjct: 10 VRHVLTSGDRVAVVQGPAGTGKTTSLKAAR 39
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 28.3 bits (64), Expect = 3.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 85 LVGPNGHGKTTLLRHIA 101
+ GPN GK+T LR +A
Sbjct: 4 ITGPNMGGKSTYLRQVA 20
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 28.6 bits (64), Expect = 3.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 85 LVGPNGHGKTTLLRHIA 101
++GP GKTTLLR IA
Sbjct: 142 IIGPPQVGKTTLLRDIA 158
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 28.8 bits (65), Expect = 3.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 83 YGLVGPNGHGKTTLLRH 99
Y ++GP G GKTTLL++
Sbjct: 114 YLVIGPPGSGKTTLLQN 130
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 28.5 bits (64), Expect = 3.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
I G + ++GPNG GK+TL + IA
Sbjct: 29 SINKGEIHAIMGPNGSGKSTLSKVIA 54
>gnl|CDD|224584 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis].
Length = 187
Score = 28.0 bits (62), Expect = 4.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 187 NQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWR 236
+L L + D + R+ LGF E + + + G WR
Sbjct: 126 EELGLHRIE-----ATVDPENEASIRVYEKLGFRLEGELRQHEFIKGRWR 170
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 27.3 bits (61), Expect = 4.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
LVGP G GK+ L +A
Sbjct: 4 LVGPPGTGKSELAERLAAA 22
>gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is unkown.
The amino acid sequence of YjiA protein in E. coli
contains several conserved motifs that characterizes it
as a P-loop GTPase. YijA gene is among the genes
significantly induced in response to DNA-damage caused
by mitomycin. YijA gene is a homologue of the CobW gene
which encodes the cobalamin synthesis protein/P47K.
Length = 158
Score = 27.6 bits (62), Expect = 4.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
L G G GKTTLL HI T
Sbjct: 5 LTGFLGAGKTTLLNHILT 22
>gnl|CDD|222960 PHA03001, PHA03001, putative virion core protein; Provisional.
Length = 132
Score = 27.3 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 127 AVNIVLSADKNRVKLL-KECSKLEQVEASDDSAVNIVLS 164
VNI L D RVKL + K+ +A A+N L
Sbjct: 3 LVNIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLE 41
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 27.2 bits (61), Expect = 5.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
L GP G GKTTL + +A
Sbjct: 3 LYGPPGTGKTTLAKAVAKEL 22
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 28.1 bits (63), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I G+R +V P GKT LL+ IA
Sbjct: 130 IGKGQRGLIVAPPRAGKTVLLQQIA 154
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 26.9 bits (59), Expect = 5.5
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 82 RYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140
+ GP G GK+TL + +A L IP S+D L E+ + DD ++ + + +
Sbjct: 1 IILITGPPGSGKSTLAKKLA-EKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEE 59
Query: 141 LLKECSKLEQV------------EASDDSAVNIVLSADKNRVKLLKECSKLERDE 183
+L E +K E V D V + L R +LLK + R E
Sbjct: 60 ILDELAKQEWVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRLQRGRGE 114
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 28.0 bits (63), Expect = 6.3
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 122
FS+ P + I G L+G NG GK+TL + L P S ++L + V A
Sbjct: 335 NGFSVGP---INLTIKRGELLFLIGGNGSGKSTLAMLLT--GLYQPQSGEILLDGKPVTA 389
Query: 123 SDDSAVNIVLSA 134
+ SA
Sbjct: 390 EQPEDYRKLFSA 401
>gnl|CDD|235335 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 27.0 bits (60), Expect = 6.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+A R LVGP G GK+T+ R +A
Sbjct: 1 MAEKRNIFLVGPMGAGKSTIGRQLA 25
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 27.7 bits (62), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 84 GLVGPNGHGKTTLLRHIA 101
G+ G +G GKTT LR +A
Sbjct: 12 GVAGDSGCGKTTFLRGLA 29
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 27.8 bits (62), Expect = 7.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + ++LAR L P +L+LDE T ++D
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.6 bits (61), Expect = 7.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 232 SGGWRM------RVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++A+ L + +LL++DEPT LD
Sbjct: 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 27.7 bits (62), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA 106
G+R G+ G GK+TLL IA A A
Sbjct: 142 CGEGQRIGIFAGAGVGKSTLLGMIARGASA 171
>gnl|CDD|220704 pfam10343, DUF2419, Protein of unknown function (DUF2419). This is
a family of conserved proteins found from plants to
humans. The function is not known. A few members are
annotated as being cobyrinic acid a,c-diamide synthetase
but this could not be confirmed.
Length = 282
Score = 27.2 bits (61), Expect = 8.0
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 138 RVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLK 174
R++ L+E + +E D S VN + SA+K+ L+
Sbjct: 95 RLRCLREAGR-VLLEKFDGSFVNCIKSANKSAAALVN 130
>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. This
domain contains a P-loop motif, also found in several
other families such as pfam00071, pfam00025 and
pfam00063. Elongation factor Tu consists of three
structural domains, this plus two C-terminal beta barrel
domains.
Length = 184
Score = 27.1 bits (61), Expect = 8.1
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC-----EQEVE 121
R G++G HGKTTL + AI ++E E
Sbjct: 4 RNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERE 49
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional.
Length = 319
Score = 27.4 bits (61), Expect = 8.1
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKL 141
L GP G GKTT + +A L P+ + + E+ ASDD +++V +N++K+
Sbjct: 39 LSGPPGTGKTTSILALA-HELLGPNYKEAVL---ELNASDDRGIDVV----RNKIKM 87
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 27.3 bits (61), Expect = 8.2
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 69 PCLKVQKQIASGRR-YGLVGPNGHGKTTLLRHIATRAL 105
P + I LVGP G GKTT L +A R +
Sbjct: 183 PVKPEEDPILERGGVIALVGPTGVGKTTTLAKLAARFV 220
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 27.4 bits (61), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATR 103
+ +G L GP G GKT L R +A
Sbjct: 40 LLAGGHVLLEGPPGVGKTLLARALARA 66
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 27.6 bits (61), Expect = 8.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 85 LVGPNGHGKTTLLRHIATRALA 106
LVGP G GKTT + +A R A
Sbjct: 355 LVGPTGAGKTTTIAKLAQRFAA 376
>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 27.3 bits (61), Expect = 9.0
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 85 LVGPNGHGKTTLLRHIA--TRA 104
L GP G GKTTL R IA TRA
Sbjct: 57 LYGPPGVGKTTLARIIANHTRA 78
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 26.7 bits (59), Expect = 9.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSI 111
+VG G GK++LL + + S +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDV 28
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 27.2 bits (60), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
FS G R LARA + ++L++DE T +D
Sbjct: 157 FSVGQRQLFCLARAFVRKSSILIMDEATASID 188
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 26.9 bits (60), Expect = 9.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 84 GLVGPNGHGKTTLLRHIA 101
G+ G +G GK+T LR +
Sbjct: 3 GVAGDSGCGKSTFLRRLT 20
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 27.2 bits (61), Expect = 9.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 66 SLSPCLKVQKQ--IASGRRYGLVGPNGHGKTTLLRHIATRA 104
L+ + V+ + + G LVGP G GKTT L +A R
Sbjct: 205 LLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARY 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.338
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,520,927
Number of extensions: 1154620
Number of successful extensions: 2139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 750
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (25.8 bits)