RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2689
(262 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 104 bits (261), Expect = 1e-25
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 192 TEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTL 251
T V D + E + L GFT EM SGGW+M+++LARA+ +
Sbjct: 511 TSVLDFVFESGVGTKE-AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569
Query: 252 LLLDEPTNHLD 262
LLLDEPTNHLD
Sbjct: 570 LLLDEPTNHLD 580
Score = 102 bits (255), Expect = 8e-25
Identities = 40/239 (16%), Positives = 85/239 (35%), Gaps = 52/239 (21%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATR------ALAIPSSIDLLYCEQEVEASDDSAVN 129
Q + R ++GPNG GK+TL+ + + + + Y +Q A +S ++
Sbjct: 695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLD 754
Query: 130 I-------------------------VLSADKNRVKLLKECS----------------KL 148
+ D + + +
Sbjct: 755 KTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814
Query: 149 EQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEA----D 204
+ E S NI + +++ + + + + R E ++ ++ D +++ +
Sbjct: 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRP 874
Query: 205 AAEPRARRILAGLGFTKE-MQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ LG E + + SGG ++++ LA + P L++LDEPTN+LD
Sbjct: 875 LTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 62.7 bits (152), Expect = 2e-11
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATR---ALAIPSSIDLLYCEQEVEASDD--SAVNI 130
++ RRYG+ GPNG GK+TL+R IA +Y E +++ + S ++
Sbjct: 457 RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDF 516
Query: 131 VLSADKNRVKLLKECSKLEQVEASDD 156
V + + +K+ KL + +D+
Sbjct: 517 VFESGVGTKEAIKD--KLIEFGFTDE 540
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 76.9 bits (190), Expect = 8e-17
Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 56/197 (28%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS--IDLLYCEQEVEASDDSAVNIVLS 133
QIA G ++ L G NG GKTTLL + A +S ++L +
Sbjct: 43 QIAKGDKWILYGLNGAGKTTLLNILN--AYEPATSGTVNLF--------------GKMPG 86
Query: 134 ADKNRVKLLKEC-----SKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQ 188
+ +++ L + + +++V+S + + ++ R+
Sbjct: 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN------ 140
Query: 189 LRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF---SGGWRMRVSLARAL 245
A ++L +G M K+ + S G + RV +ARAL
Sbjct: 141 --------------------EAHQLLKLVG----MSAKAQQYIGYLSTGEKQRVMIARAL 176
Query: 246 FLEPTLLLLDEPTNHLD 262
+P +L+LDEP LD
Sbjct: 177 MGQPQVLILDEPAAGLD 193
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 67.9 bits (167), Expect = 6e-14
Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 60/201 (29%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
+E +++ I G GPNG GKTTLL+ I+T P +++Y +
Sbjct: 25 LERITMT--------IEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEIIYNGVPIT 74
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLER 181
K ++ L E + R
Sbjct: 75 KV-------------------------------------------KGKIFFLPEEIIVPR 91
Query: 182 DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSL 241
S ++ L + L ++ + + L + +K E S G RV L
Sbjct: 92 KISVEDYL---KAVASLYGVKVN--KNEIMDALESVEVLD--LKKKLGELSQGTIRRVQL 144
Query: 242 ARALFLEPTLLLLDEPTNHLD 262
A L + + +LD+P +D
Sbjct: 145 ASTLLVNAEIYVLDDPVVAID 165
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 63.9 bits (156), Expect = 8e-12
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 181 RDESGDNQLRLTEVYDELKSIEADAAEPRAR--RILAGLGFTKEMQEKSTKEFSGGWRMR 238
+ + + T VY+ L I++ +L LG ++ +++ ++ SGG R
Sbjct: 422 KPQYIKAEYEGT-VYELLSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQR 479
Query: 239 VSLARALFLEPTLLLLDEPTNHLD 262
V++A L + + LLDEP+ +LD
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLD 503
Score = 53.9 bits (130), Expect = 2e-08
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 201 IEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNH 260
++ + ++ L + ++ + SGG RV++A AL + DEP+++
Sbjct: 200 LKKVDEVGKFEEVVKELELENVL-DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY 258
Query: 261 LD 262
LD
Sbjct: 259 LD 260
Score = 40.0 bits (94), Expect = 6e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 59 DIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
K+E I G G+VGPNG GKTT ++ +A
Sbjct: 369 SFKLEVEPGE--------IRKGEVIGIVGPNGIGKTTFVKMLA 403
Score = 35.0 bits (81), Expect = 0.023
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G G+VGPNG GKTT ++ +A
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILA 138
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 63.5 bits (155), Expect = 9e-12
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 178 KLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRM 237
++ + G Q L + S + E + L + E + + SGG
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFFE----EVTKRLNLH-RLLESNVNDLSGGELQ 392
Query: 238 RVSLARALFLEPTLLLLDEPTNHLD 262
++ +A L E L +LD+P+++LD
Sbjct: 393 KLYIAATLAKEADLYVLDQPSSYLD 417
Score = 49.3 bits (118), Expect = 5e-07
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
+ + + + L + K SGG R+ +A +L E + + D+
Sbjct: 106 VNEILTKIDERGKKDEVKELLN-MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQ 164
Query: 257 PTNHLD 262
P+++LD
Sbjct: 165 PSSYLD 170
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGK 93
E+ + +S+ K K + + D ++ + G G++GPNG GK
Sbjct: 256 EVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGE--------AKEGEIIGILGPNGIGK 307
Query: 94 TTLLRHIA 101
TT R +
Sbjct: 308 TTFARILV 315
Score = 33.1 bits (76), Expect = 0.097
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G++G NG GKTT+L+ +A
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILA 46
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 62.2 bits (152), Expect = 1e-11
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
+ + E R G E + +S G ++ +ARAL + P L +LDE
Sbjct: 114 GFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172
Query: 257 PTNHLD 262
PT+ LD
Sbjct: 173 PTSGLD 178
Score = 39.1 bits (92), Expect = 7e-04
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
++ S I G +GL+GPNG GKTT LR I+T L PSS
Sbjct: 31 LKGISFE--------IEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSS 69
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 62.7 bits (153), Expect = 2e-11
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 194 VYDELKSIEADAAEPRAR--RILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTL 251
VY+ L I+A +L LG ++ ++ E SGG RV++A L + +
Sbjct: 364 VYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADI 422
Query: 252 LLLDEPTNHLD 262
LLDEP+ +LD
Sbjct: 423 YLLDEPSAYLD 433
Score = 47.3 bits (113), Expect = 2e-06
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
++ ++ + ++ L + + E+ + SGG RV++A AL T DE
Sbjct: 126 VIELLKKADETGKLEEVVKALEL-ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 257 PTNHLD 262
P+++LD
Sbjct: 185 PSSYLD 190
Score = 37.3 bits (87), Expect = 0.004
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHG 92
FT + + + V + +F L +I G G+VGPNG G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLE---VEPGEIKKGEVIGIVGPNGIG 324
Query: 93 KTTLLRHIA 101
KTT ++ +A
Sbjct: 325 KTTFVKMLA 333
Score = 31.9 bits (73), Expect = 0.19
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
+ G G+VGPNG GK+T ++ +A
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILA 68
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 60.8 bits (148), Expect = 3e-11
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+L L +E+ + + S G + V + AL +P ++ LDEP ++D
Sbjct: 107 LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 19/68 (27%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGK 93
+L+N ++ S K + S +++ ++++ G + ++GPNG GK
Sbjct: 3 QLKNVGITLSGKGYERFS-LENINLEVN------------------GEKVIILGPNGSGK 43
Query: 94 TTLLRHIA 101
TTLLR I+
Sbjct: 44 TTLLRAIS 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 57.6 bits (140), Expect = 4e-10
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 209 RARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
A + L L + ++ SGG R + +ARA+ E L+LLDEPT+ LD
Sbjct: 108 VAMQALDYLN-LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Score = 41.0 bits (97), Expect = 2e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
+ G ++G NG GK+TLL +
Sbjct: 27 DLNKGDILAVLGQNGCGKSTLLDLLL 52
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 57.6 bits (140), Expect = 4e-10
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 198 LKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEP 257
L+++E + R R + LG + ++ SGG R RV+LARAL ++P LLLLDEP
Sbjct: 95 LRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 258 TNHLD 262
+ +D
Sbjct: 154 LSAVD 158
Score = 33.7 bits (78), Expect = 0.035
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+GP G GK+ L IA
Sbjct: 29 LLGPTGAGKSVFLELIA 45
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 56.4 bits (137), Expect = 8e-10
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 194 VYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLL 253
++ ++ + RA L + + SGG + RV++ARAL P ++L
Sbjct: 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 254 LDEPTNHLD 262
D+PT LD
Sbjct: 169 ADQPTWALD 177
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 57.0 bits (138), Expect = 2e-09
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 186 DNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL 245
QL ++ + + ++ L ++ ++ + SGG RV++ AL
Sbjct: 430 VRQLFFKKIRGQFLN------PQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLAL 482
Query: 246 FLEPTLLLLDEPTNHLD 262
+ + L+DEP+ +LD
Sbjct: 483 GIPADIYLIDEPSAYLD 499
Score = 51.6 bits (124), Expect = 9e-08
Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 46/193 (23%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
G+ GLVG NG GK+T L+ +A P+ D ++ +
Sbjct: 100 PRPGQVLGLVGTNGIGKSTALKILA--GKQKPNLGRF---------DDPPEWQEIIKYFR 148
Query: 137 NRVKLLKECSKLEQVEASDDSAVNI-------VLSADKNRVKLLKECSKLERDESGDNQL 189
E DD I + A K V+ + E KL ++ +
Sbjct: 149 -----GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEK---SPE 200
Query: 190 RLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP 249
+ L+ +E +L ++ ++ SGG R ++ + E
Sbjct: 201 DVKRYIKILQ-LE---------NVL----------KRDIEKLSGGELQRFAIGMSCVQEA 240
Query: 250 TLLLLDEPTNHLD 262
+ + DEP+++LD
Sbjct: 241 DVYMFDEPSSYLD 253
Score = 39.6 bits (93), Expect = 8e-04
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 32 TDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGH 91
T++L+N + S++ S + T D ++ VE S ++G NG
Sbjct: 342 TEDLQNDSASRAFSYPSLKKTQGDFVLN--VEEGEFSD----------SEILVMMGENGT 389
Query: 92 GKTTLLRHIA 101
GKTTL++ +A
Sbjct: 390 GKTTLIKLLA 399
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 54.9 bits (133), Expect = 4e-09
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 205 AAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARAL-------FLEPTLLLLDEP 257
+ L + +ST + SGG RV LA + LLLLDEP
Sbjct: 102 TRTELLNDVAGALA-LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160
Query: 258 TNHLD 262
N LD
Sbjct: 161 MNSLD 165
Score = 42.9 bits (102), Expect = 4e-05
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIA 101
++ +G LVGPNG GK+TLL +A
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMA 47
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 53.7 bits (130), Expect = 1e-08
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 186 DNQLRLTEVYDEL------KSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRV 239
DNQL VY ++ + D R L G +++K T S G + RV
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRV 152
Query: 240 SLARALFLEPTLLLLDEPTNHLD 262
++A L +EP +L+LDEPT LD
Sbjct: 153 AIAGVLVMEPKVLILDEPTAGLD 175
Score = 41.8 bits (99), Expect = 9e-05
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 130
I G ++G NG GK+TL ++ + PSS +L+ + ++ S + +
Sbjct: 30 NIKRGEVTAILGGNGVGKSTLFQNFN--GILKPSSGRILFDNKPIDYSRKGIMKL 82
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 51.7 bits (125), Expect = 3e-08
Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 56/185 (30%)
Query: 86 VGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRV------ 139
+G +G GK+TLL + L P+ + +EV+ +++ LS +NR
Sbjct: 36 IGASGSGKSTLLYILGL--LDAPTEGKVFLEGKEVDYTNEKE----LSLLRNRKLGFVFQ 89
Query: 140 --KLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE 197
L+ E + LE V + +
Sbjct: 90 FHYLIPELTALENVI--------------------------------------VPMLKMG 111
Query: 198 LKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEP 257
EA + R +L+ LG ++ K E SGG + RV++ARAL EP LL DEP
Sbjct: 112 KPKKEA---KERGEYLLSELGLGDKLSRKPY-ELSGGEQQRVAIARALANEPILLFADEP 167
Query: 258 TNHLD 262
T +LD
Sbjct: 168 TGNLD 172
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 52.2 bits (126), Expect = 3e-08
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 55/200 (27%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
Q +G ++G +G GK+T LR I L PS ++ Q + D + ++
Sbjct: 28 QARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 136 KNRVKLLKEC-------------SKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERD 182
L + LE N++ + +++L L +
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLE----------NVMEAP----IQVL----GLSKH 127
Query: 183 ESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLA 242
+ A RA + LA +G + Q K SGG + RVS+A
Sbjct: 128 D----------------------ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165
Query: 243 RALFLEPTLLLLDEPTNHLD 262
RAL +EP +LL DEPT+ LD
Sbjct: 166 RALAMEPDVLLFDEPTSALD 185
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 52.6 bits (127), Expect = 4e-08
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 198 LKSIEADAAEPRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
L + + A+ +RI A L T E+ + E SGG + R +LARAL +P L+LLD
Sbjct: 105 LGNGKGRTAQ-ERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163
Query: 256 EPTNHLD 262
EP + LD
Sbjct: 164 EPFSALD 170
Score = 37.5 bits (88), Expect = 0.002
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+ + SLS + G ++G +G GKTTLLR +A
Sbjct: 20 LNDISLS--------LDPGEILFIIGASGCGKTTLLRCLA 51
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 51.0 bits (123), Expect = 1e-07
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 208 PRARRILAGLGFTK--EMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+R+L K + +++ SGG + RV+LARAL P +LLLDEP + LD
Sbjct: 103 KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 36.0 bits (84), Expect = 0.009
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 59 DIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
+ ++N SL + SG + ++GP G GKT L IA
Sbjct: 13 NFSLDNLSLK--------VESGEYFVILGPTGAGKTLFLELIA 47
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 50.6 bits (122), Expect = 1e-07
Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 52/203 (25%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
++ S+S + G ++GPNG GK+TL+ I + + +++
Sbjct: 23 LDGVSIS--------VNKGDVTLIIGPNGSGKSTLINVIT--GFLKADEGRVYFENKDIT 72
Query: 122 ASDDSAVN---IVLSADKNR----VKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLK 174
+ + + IV R + LKE + LE N +L + +
Sbjct: 73 NKEPAELYHYGIV------RTFQTPQPLKEMTVLE----------N-LLIGEICPGE--- 112
Query: 175 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGG 234
S N L + + + + A + IL L + K+ E SGG
Sbjct: 113 ---------SPLNSLFYKKWIPKEEEMVEKAFK-----ILEFLKLSHLYDRKA-GELSGG 157
Query: 235 WRMRVSLARALFLEPTLLLLDEP 257
V + RAL P ++++DEP
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEP 180
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 50.3 bits (121), Expect = 1e-07
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 186 DNQLRLTEVYDEL------KSIEADAAEPRARRILAGLGFTKE-MQEKSTKEFSGGWRMR 238
++Q V+DE+ + D ++ + +G + +++ SGG + R
Sbjct: 88 EDQFFAERVFDEVAFAVKNFYPDRDPVP-LVKKAMEFVGLDFDSFKDRVPFFLSGGEKRR 146
Query: 239 VSLARALFLEPTLLLLDEPTNHLD 262
V++A + EP +L+LDEP LD
Sbjct: 147 VAIASVIVHEPDILILDEPLVGLD 170
Score = 38.7 bits (91), Expect = 9e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
I G + G G GK+TLL+ +A L P+S
Sbjct: 29 VINEGECLLVAGNTGSGKSTLLQIVA--GLIEPTS 61
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 50.3 bits (121), Expect = 2e-07
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 197 ELKSIEADAAEPRARRILA--GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLL 254
K + D + R R +L L + E SGG + RV+LARAL P +LL
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLE---SYANRFPHELSGGQQQRVALARALAPRPQVLLF 169
Query: 255 DEPTNHLD 262
DEP +D
Sbjct: 170 DEPFAAID 177
Score = 38.0 bits (89), Expect = 0.002
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
V S I G GL+GP+G GKTT+LR IA
Sbjct: 31 VRGVSFQ--------IREGEMVGLLGPSGSGKTTILRLIA 62
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 48.4 bits (116), Expect = 6e-07
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTK---EFSGGWRMRVSLARALFLEPTLLL 253
+++ + AE +A +L +G +++K+ SGG RV++ARAL +EP ++L
Sbjct: 127 KVRKWPREKAEAKAMELLDKVG----LKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182
Query: 254 LDEPTNHLD 262
DEPT+ LD
Sbjct: 183 FDEPTSALD 191
Score = 28.7 bits (65), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLR 98
I G ++GP+G GK+T LR
Sbjct: 46 HIREGEVVVVIGPSGSGKSTFLR 68
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 46.1 bits (110), Expect = 5e-06
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+E SG + RV+LARAL +P+LLLLDEP ++LD
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Score = 39.2 bits (92), Expect = 7e-04
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 8/40 (20%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIA 101
++N +++ I +G R+G++GP+G GKTT +R IA
Sbjct: 21 LDNVNIN--------IENGERFGILGPSGAGKTTFMRIIA 52
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 44.4 bits (106), Expect = 1e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL P +L+ DE T+ LD
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALD 177
Score = 31.7 bits (73), Expect = 0.19
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
+N +L I G G+VG +G GK+TL
Sbjct: 26 DNINL--------SIKQGEVIGIVGRSGSGKSTL 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 44.6 bits (106), Expect = 2e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+++ARAL +P +LLLDE T+ LD
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Score = 44.3 bits (105), Expect = 2e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+++ARAL P +LLLDE T+ LD
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALD 558
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 59 DIKV-ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLL 97
I V + SL + G+ LVG +G GK+T++
Sbjct: 1045 SIPVLQGLSLE--------VKKGQTLALVGSSGCGKSTVV 1076
Score = 28.1 bits (63), Expect = 3.7
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 59 DIKV-ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLL 97
++++ + +L + SG+ LVG +G GK+T +
Sbjct: 402 EVQILKGLNLK--------VKSGQTVALVGNSGCGKSTTV 433
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 43.9 bits (103), Expect = 2e-05
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 9/143 (6%)
Query: 129 NIVLSADKNRVKLLKECSKLEQVEASDDSAV---NIVLSADKNRVKLLKECSKLERDESG 185
+ +L +D+ R K+++E L++ E + ++ K+ K +
Sbjct: 144 DAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALS 203
Query: 186 DNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLA--- 242
+E++ E + RA L E +E+ SGG R+ + LA
Sbjct: 204 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRL 263
Query: 243 ---RALFLEPTLLLLDEPTNHLD 262
L E +LL+LDEPT +LD
Sbjct: 264 AMSLYLAGEISLLILDEPTPYLD 286
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-05
Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 84/298 (28%)
Query: 17 SKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQ 76
S + E Q + + + Q + + +V L L +
Sbjct: 96 SPIKTEQR-----QPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---E 146
Query: 77 IASGRRYGLVGPNGHGKTTL----LRH-------------IATRALAIPSSI-----DLL 114
+ + + G G GKT + + + P ++ LL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 115 Y-CEQEVEASDDSAVNIVLSAD--KNRVK-LLKE-------------CSKLEQVEASD-- 155
Y + + D + NI L + ++ LLK + + A +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLS 265
Query: 156 --------DSAVNIVLSADKNRVKLLKECSK-LERDESGDNQLRLTEV-YDELKSIEADA 205
V LSA L S L DE L+ + +L E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLT 324
Query: 206 AEPRARRILAGLGFTKEMQE-KSTKEFSGGWR----------MRVSLARALFLEPTLL 252
PR L+ + + +++ +T + W+ + SL LEP
Sbjct: 325 TNPRR---LSIIA--ESIRDGLATWDN---WKHVNCDKLTTIIESSLN---VLEPAEY 371
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 43.4 bits (103), Expect = 4e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+++ARAL P +LLLDE T+ LD
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALD 515
Score = 30.3 bits (69), Expect = 0.70
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 9/39 (23%)
Query: 59 DIKV-ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
++ + ++FSLS I SG LVGP+G GK+T+
Sbjct: 356 EVPIFQDFSLS--------IPSGSVTALVGPSGSGKSTV 386
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 5e-05
Identities = 62/365 (16%), Positives = 104/365 (28%), Gaps = 140/365 (38%)
Query: 22 ELSALSGGQGT-----DELEN-FTVSQS------SKASSK-----RSTVDDNSV-----D 59
+L A+ GGQG +EL + + ++ R+T+D V +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 60 IK--VENFSLSP---------------CLKVQKQIA--------SGRRYGLVGPNGHGKT 94
I +EN S +P + Q+A G G + G T
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGV---IQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 95 TLLRHIATRALAIPSS-------------IDLLY-----CEQ-------EVEASDDSAVN 129
+ + T A+AI + I +L+ C + +DS N
Sbjct: 272 GHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 130 IV------LS-ADKNRVKLLKECSKLEQVEASDDSAVNIVLS-ADKNRV------KLLKE 175
LS ++ + ++ +K V I L KN V L
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 176 CSKLERD--ESGDNQ----------------LRLTEVY------DELKSIEADAAEPRAR 211
L + SG +Q L + + I D +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK---- 445
Query: 212 RILAGLGFT-KEMQE--KSTKEFSGGWRMRV-------SLARALFLEP---TLLLLDEPT 258
+ F K++Q T + G +RV + + P + T
Sbjct: 446 ---NNVSFNAKDIQIPVYDTFD---GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 259 NH-LD 262
H LD
Sbjct: 500 -HILD 503
Score = 39.6 bits (92), Expect = 7e-04
Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 65/207 (31%)
Query: 85 LVGPNGHGKTTLLR-------HIATRALAI---PSS-IDLL-----YCEQEVEASDDSAV 128
LV + L+ T A P++ +L+ Y VE S
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 129 NIVLSADKNRVKLLKE---------------CSKLEQVEASDDSAVNIVLSADKNRVKLL 173
+ VL+ L E L++ + + ++ + R+
Sbjct: 81 DQVLNL------CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 174 KECSK------LERDESGDNQLRL-------TEVY-DELKSI---EADAAEP---RARRI 213
+ K G+ QL T+ Y +EL+ + +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 214 LAGLGFTKEMQEKSTKEFSGG-----W 235
L+ L T + K F+ G W
Sbjct: 195 LSELIRTT---LDAEKVFTQGLNILEW 218
Score = 37.3 bits (86), Expect = 0.004
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 42/104 (40%)
Query: 171 KLLKECSKLERD---ESGDNQLRLTE------------VYDELKS---IEADAAEPRARR 212
K+ KE ++ S L T+ +++LKS I ADA
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT------ 1758
Query: 213 ILAG--LGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLL 254
AG LG E++ SLA + +E + ++
Sbjct: 1759 -FAGHSLG-----------EYAA----LASLADVMSIESLVEVV 1786
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 42.5 bits (101), Expect = 5e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARA P +L+LDE T LD
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171
Score = 28.2 bits (64), Expect = 2.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 77 IASGRRYGLVGPNGHGKTTLLR 98
GP+G GK+T+
Sbjct: 25 AQPNSIIAFAGPSGGGKSTIFS 46
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 42.6 bits (101), Expect = 6e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV++ARAL EP +LLLDEP ++LD
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 34.5 bits (80), Expect = 0.025
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+GP+G GK+TLL IA
Sbjct: 34 LLGPSGSGKSTLLYTIA 50
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 41.7 bits (99), Expect = 1e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R V+LARAL +P LL+LD T+ LD
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 59 DIKV-ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
+++V + + + + G+ LVGPNG GK+T+
Sbjct: 31 NVQVLQGLTFT--------LYPGKVTALVGPNGSGKSTV 61
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 230 EFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++ARAL P +LL D+ T+ LD
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Score = 31.5 bits (72), Expect = 0.25
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHI 100
+ +G+ YG++G +G GK+TL+R +
Sbjct: 50 HVPAGQIYGVIGASGAGKSTLIRCV 74
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG R RV++ARA+ +EP +LL+DEP ++LD
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Score = 34.1 bits (79), Expect = 0.031
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+GP+G GKTT LR IA
Sbjct: 42 LLGPSGCGKTTTLRMIA 58
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 41.0 bits (97), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ SGG + RV+LARAL +P +LL DEP ++LD
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Score = 34.5 bits (80), Expect = 0.027
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+GP+G GKTT L +A
Sbjct: 34 LLGPSGCGKTTTLLMLA 50
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 40.2 bits (95), Expect = 3e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++AR L +P +++ DE T+ LD
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Score = 31.0 bits (71), Expect = 0.29
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHI 100
I SG LVG G GK+T+ + +
Sbjct: 42 FIPSGTTCALVGHTGSGKSTIAKLL 66
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + RV++AR + P ++LLDE T+ LD
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALD 222
Score = 31.0 bits (71), Expect = 0.35
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHI 100
+ G+ LVGP+G GK+T+LR +
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLL 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 39.0 bits (91), Expect = 4e-04
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 191 LTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLA------RA 244
+E++ E + RA L E +E+ SGG R+ + LA
Sbjct: 18 ASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLY 77
Query: 245 LFLEPTLLLLDEPTNHLD 262
L E +LL+LDEPT +LD
Sbjct: 78 LAGEISLLILDEPTPYLD 95
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 40.6 bits (96), Expect = 4e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL + +L+LDE T+ LD
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
Score = 27.9 bits (63), Expect = 3.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
N +L I +G+ LVG +G GK+T+
Sbjct: 360 RNINLK--------IPAGKTVALVGRSGSGKSTI 385
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 39.9 bits (94), Expect = 5e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+E SGG R RV+L RA+ +P + L+DEP ++LD
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Score = 34.1 bits (79), Expect = 0.033
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+GP+G GKTT LR IA
Sbjct: 34 LLGPSGCGKTTTLRMIA 50
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 40.3 bits (95), Expect = 5e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R RV++ARAL + +L+LDE T+ LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512
Score = 29.1 bits (66), Expect = 1.5
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 22/77 (28%)
Query: 42 QSSKASSKR--------STVDDNSV-------DIKVENFSLS------PCLK-VQKQIAS 79
Q A+ + + D+ ++ V++ + + P L V I
Sbjct: 309 QRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQ 368
Query: 80 GRRYGLVGPNGHGKTTL 96
G+ LVG +G GK+T+
Sbjct: 369 GKTVALVGRSGSGKSTI 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 39.7 bits (93), Expect = 5e-04
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G + + LAR++ + +LLLDEP+ HLD
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
Score = 28.9 bits (65), Expect = 1.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 59 DIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLLR 98
+ V++ + L+ + I+ G+R GL+G G GK+TLL
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 38.7 bits (91), Expect = 0.001
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+S+AR P +L+LDE T+ LD
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALD 509
Score = 30.6 bits (70), Expect = 0.46
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
++ +LS I G VG +G GK+TL
Sbjct: 358 KDINLS--------IEKGETVAFVGMSGGGKSTL 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 36.8 bits (86), Expect = 0.005
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 229 KEFSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
K SGG R RV++ R L EP++ LLDEP ++LD
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 34.1 bits (79), Expect = 0.038
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 85 LVGPNGHGKTTLLRHIA 101
VGP+G GK+TLLR IA
Sbjct: 34 FVGPSGCGKSTLLRMIA 50
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 34.8 bits (81), Expect = 0.014
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+SLARA++ + L LLD P +LD
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLD 162
Score = 29.8 bits (68), Expect = 0.72
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 59 DIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLL 97
++ +EN + P LK + +I G+ + G G GKT+LL
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL 51
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 35.6 bits (83), Expect = 0.016
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
FSGG + R+S+ARAL +P +L+LD+ T+ +D
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 34.7 bits (81), Expect = 0.017
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPT 258
SGG + +++ RAL P LL++DEP+
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPS 167
Score = 33.6 bits (78), Expect = 0.046
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+G NG GKTT L IA
Sbjct: 37 LIGANGAGKTTTLSAIA 53
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 34.2 bits (79), Expect = 0.026
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+SLARA++ + L LLD P +LD
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Score = 31.9 bits (73), Expect = 0.14
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 44 SKASSKRSTVDDNSVDIKVENFSLSPCLK-VQKQIASGRRYGLVGPNGHGKTTLL 97
++++++ D+S+ + +P LK + +I G+ + G G GKT+LL
Sbjct: 27 QNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 34.1 bits (79), Expect = 0.031
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEP 257
SGG + RVSLARA++ + L D+P
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDP 154
Score = 29.1 bits (66), Expect = 1.2
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 60 IKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLL 97
I V N + + P L + I G +VG G GK++LL
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL 48
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 33.3 bits (76), Expect = 0.075
Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 28/159 (17%)
Query: 112 DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVK 171
+ E S + + + + +K + KL K L++V +K
Sbjct: 181 RIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPL 240
Query: 172 LLKECSK-LERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230
+ K ++ + + + LT+ ++ +
Sbjct: 241 IQKYLNEAFSEFDLPYSFVELTKDFEVRVH--------------------APNGVLTIDN 280
Query: 231 FSGGWRMRVSLARALFL-------EPTLLLLDEPTNHLD 262
SGG ++ V+L+ L + ++LDEPT +LD
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLD 319
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.13
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 135 DKNRVKLLKECSKLEQVEASDDSAVNIVLSA 165
+K +K L+ KL +DDSA + + A
Sbjct: 18 EKQALKKLQASLKL----YADDSAPALAIKA 44
Score = 31.1 bits (69), Expect = 0.17
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 9 EKKQLKK-QSK---YQQELSA 25
EK+ LKK Q+ Y + SA
Sbjct: 18 EKQALKKLQASLKLYADD-SA 37
Score = 31.1 bits (69), Expect = 0.20
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 26/50 (52%)
Query: 166 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILA 215
+K +K KL+ L+L Y D+A P A LA
Sbjct: 18 EKQALK------KLQ------ASLKL---Y------ADDSA-P-A---LA 41
Score = 27.2 bits (59), Expect = 4.1
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 19/44 (43%)
Query: 74 QKQ-I----ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 112
+KQ + AS + Y + + ALAI ++++
Sbjct: 18 EKQALKKLQASLKLYA---DD-----------SAPALAIKATME 47
Score = 26.1 bits (56), Expect = 8.4
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 8/26 (30%)
Query: 117 EQEV---EAS-----DDSAVNIVLSA 134
+Q + +AS DDSA + + A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 32.6 bits (74), Expect = 0.15
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 75 KQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV-NIVLS 133
K + + GP G GKT I LA + +L C A + AV +
Sbjct: 366 KTVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQGNGPVLVC-----APSNIAVDQLTEK 419
Query: 134 ADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLE--RDESGDNQLRL 191
+ +K+++ C+ + EA D + L + + E KL+ +DE+G+
Sbjct: 420 IHQTGLKVVRLCA--KSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD 477
Query: 192 TEVYDELKS 200
+ Y LK
Sbjct: 478 EKRYRALKR 486
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.34
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 82 RYGLVGPNGHGKTTLLRHIATR 103
+ + G G GKTTL++ I R
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 29.9 bits (68), Expect = 0.53
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSI 111
L G G GKTTL R + + + ++
Sbjct: 38 LNGDLGAGKTTLTRGML-QGIGHQGNV 63
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.4 bits (68), Expect = 0.58
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
++G GK+++++ +DL E+ S + + VK L
Sbjct: 35 VLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPS 94
Query: 145 CSK-LEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL 198
K L+ ++ I + ++ L ++ + V DE
Sbjct: 95 LLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN---LLESFEQASKDNVIIVLDEA 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 29.9 bits (68), Expect = 0.60
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140
GP G GKT +A + + E+ ASD+ +++V ++++K
Sbjct: 43 FSGPPGTGKTATAIALARDLFGENWRDNFI----EMNASDERGIDVV----RHKIK 90
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 30.6 bits (70), Expect = 0.62
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 205 AAEPRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDE 256
A E R L GLG+ + Q E SGG R+ LA L T+ +LDE
Sbjct: 702 ADESAIFRALDTLREVGLGYLRLGQ--PATELSGGEAQRIKLATELRRSGRGGTVYVLDE 759
Query: 257 PT 258
PT
Sbjct: 760 PT 761
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 0.76
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 124
R L GP G GKTTL+ + + +D Y E+ +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGR 45
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 29.7 bits (66), Expect = 0.97
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAI 107
K+++ + + L+G GK++LLR I
Sbjct: 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGI 58
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 28.5 bits (64), Expect = 1.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 84 GLVGPNGHGKTTLL 97
++G NG GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 29.4 bits (67), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
S G R +++ RA P +L+LDE T+++D
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Score = 29.4 bits (67), Expect = 1.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 63 ENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
++ + I G++ LVGP G GKTT+
Sbjct: 372 KDITF--------HIKPGQKVALVGPTGSGKTTI 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 90 GHGKTTLLRHI 100
G GKTTLLRHI
Sbjct: 14 GAGKTTLLRHI 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.0 bits (65), Expect = 1.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
L GP G GKT + R +A
Sbjct: 243 LYGPPGTGKTLIARAVANET 262
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.8 bits (65), Expect = 1.7
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140
GP G GKT +A + + E+ ASD+ +++V ++++K
Sbjct: 43 FSGPPGTGKTATAIALARDLFGENWRDNFI----EMNASDERGIDVV----RHKIK 90
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.0 bits (64), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRAL 105
K++ G R +VG + GKT+L R + + AL
Sbjct: 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 28.7 bits (65), Expect = 1.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 85 LVGPNGHGKTTLL 97
+ G NG GKT LL
Sbjct: 31 IYGENGAGKTNLL 43
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 28.0 bits (63), Expect = 2.2
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 87 GPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 132
G G GK+ LL+ +AL + + +
Sbjct: 43 GEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLA 88
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.0 bits (63), Expect = 2.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 83 YGLVGPNGHGKTTLL 97
++G NG GK++LL
Sbjct: 26 NLIIGQNGSGKSSLL 40
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.3 bits (63), Expect = 2.4
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA 106
G L G G GKTT +
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 28.3 bits (63), Expect = 2.9
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 224 QEKSTKEFSGGWRMRVSLARALFLEPTL------LLLDEPTNHLD 262
E+ + SGG R +S++ A+ L +DE + LD
Sbjct: 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLD 317
Score = 27.5 bits (61), Expect = 4.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 83 YGLVGPNGHGKTTLL 97
+ GPNG GK++L
Sbjct: 26 TVVEGPNGAGKSSLF 40
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.1 bits (62), Expect = 3.0
Identities = 13/144 (9%), Positives = 36/144 (25%), Gaps = 2/144 (1%)
Query: 1 MSKKLSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDI 60
++++L ++ + ++ ++ +
Sbjct: 40 IAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKD 99
Query: 61 KVENFSLSPCLKVQKQIASGRR-YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119
VE+ + P +K ++ +V G + + + D + Q
Sbjct: 100 HVEDVNFQP-VKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQI 158
Query: 120 VEASDDSAVNIVLSADKNRVKLLK 143
V L K+ K
Sbjct: 159 VPMDGFHLSRRCLDLFKDPQTAHK 182
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 28.2 bits (64), Expect = 3.1
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 208 PRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---TLLLLDEPT 258
P +R L GLG+ K Q +T SGG R+ LA L TL +LDEPT
Sbjct: 780 PSIKRTLQVLHDVGLGYVKLGQPATT--LSGGEAQRIKLASELRKRDTGRTLYILDEPT 836
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 28.2 bits (64), Expect = 3.4
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 85 LVGPNGHGKTTLLRHIATRAL 105
L GP G GKT+L + IA ++L
Sbjct: 113 LAGPPGVGKTSLAKSIA-KSL 132
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.8 bits (61), Expect = 3.4
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 87 GPNGHGKTTLLRHIATRALAIPSSIDLLY 115
G G GKTT P+ I L+
Sbjct: 19 GAYGIGKTTAAEEFLHHFAITPNRILLIG 47
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.0 bits (62), Expect = 3.9
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA 106
G G GKT L+ A A
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACA 307
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.9 bits (63), Expect = 4.1
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 204 DAAE-----PRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---T 250
DA + P+ +R L GLG+ K Q +T SGG RV LA L T
Sbjct: 509 DALDFFASIPKIKRKLETLYDVGLGYMKLGQPATT--LSGGEAQRVKLAAELHRRSNGRT 566
Query: 251 LLLLDEPT 258
L +LDEPT
Sbjct: 567 LYILDEPT 574
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 27.6 bits (62), Expect = 4.1
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 192 TEVYDELKSIEADAAEPRARR------ILAG 216
E+ S+ A A R R I AG
Sbjct: 235 PEILTARYSVGAVDAVRRTRELVHTEGIFAG 265
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 27.7 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140
GP G GKTT +A + L E+ ASD+ +N++ + +VK
Sbjct: 51 FAGPPGVGKTTAALALARELFGENWRHNFL----ELNASDERGINVI----REKVK 98
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 27.5 bits (62), Expect = 4.6
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 181 RDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE-FSGGWRMRV 239
R G L + D ++ +A L +++ +S FSGG + R
Sbjct: 126 RSYRGQETLDRFDFQDLMEEK------------IALLKMPEDLLTRSVNVGFSGGEKKRN 173
Query: 240 SLARALFLEPTLLLLDE 256
+ + LEP L +LDE
Sbjct: 174 DILQMAVLEPELCILDE 190
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.9 bits (59), Expect = 4.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 83 YGLVGPNGHGKTTLLRHI 100
+VG + GKTTL+ +
Sbjct: 5 LSIVGTSDSGKTTLITRM 22
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 5.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 83 YGLVGPNGHGKTTLLRHIATR 103
+ +VG GKTTL+
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAA 27
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.3 bits (60), Expect = 5.1
Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 20/194 (10%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE----VEASDDSAVNIVLSADKNRVK 140
++ G GK+ + + R S + ++ E+E V I + + ++
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLG--GVWINCTGGEGKIN 97
Query: 141 LL----KECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 196
L + + ++ A S + + + + L L E + L EVY
Sbjct: 98 PLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLYLR--DLTDTEKAALEDALVEVYK 155
Query: 197 ELKSIEADAAEPRARRILAGLG-FTKEMQEKSTKEFSGGWRMRVSLAR-------ALFLE 248
E + + +K+ + R+ V L R L+
Sbjct: 156 EAGITWDTDPRGVPNDKWPTVKELYEYCVKKAEENPETYGRLSVLLKRAAEGADSYLWAG 215
Query: 249 PTLLLLDEPTNHLD 262
PT + D D
Sbjct: 216 PTAVEADSDFIVFD 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 27.0 bits (60), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 85 LVGPNGHGKTTLLRHIATRAL 105
L G G GKTT L +A ++
Sbjct: 110 LFGSTGAGKTTTLAKLAAISM 130
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.7 bits (58), Expect = 6.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 83 YGLVGPNGHGKTTLLRHI 100
+G GKTTLL+ +
Sbjct: 9 LAFAAWSGTGKTTLLKKL 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 26.9 bits (60), Expect = 6.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
LVGP G GKT L R +A A
Sbjct: 78 LVGPPGVGKTHLARAVAGEA 97
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.2 bits (60), Expect = 6.7
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140
L GP G GKTT A + + +L Y E ASD + ++ VK
Sbjct: 82 LYGPPGIGKTTA-------AHLV--AQELGYDILEQNASDVRSKTLL----NAGVK 124
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 74 QKQIASGRRY--GLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
+ R L G G GK+TL +A A +++
Sbjct: 14 RLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 26.9 bits (60), Expect = 6.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
LVGP G GKT L R +A A
Sbjct: 54 LVGPPGVGKTHLARAVAGEA 73
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 27.0 bits (60), Expect = 7.1
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
L+G G GK+ L + +A L +++ + E + + V + R+ E
Sbjct: 65 LIGEPGTGKSMLGQAMA--ELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRI---VE 119
Query: 145 CSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLE 180
+ + + N+ L + KLL +
Sbjct: 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT 155
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 27.1 bits (61), Expect = 7.1
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 204 DAAE-----PRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---T 250
DA + P+ +R L GLG+ K Q +T SGG RV LA L T
Sbjct: 811 DALDFFASIPKIKRKLETLYDVGLGYMKLGQPATT--LSGGEAQRVKLAAELHRRSNGRT 868
Query: 251 LLLLDEPT 258
L +LDEPT
Sbjct: 869 LYILDEPT 876
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.1 bits (61), Expect = 7.2
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 204 DAAE-----PRARRILA-----GLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEP---T 250
+AAE R L GLG+ + Q T SGG RV LA L T
Sbjct: 829 EAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPT--LSGGEAQRVKLASELQKRSTGRT 886
Query: 251 LLLLDEPT 258
+ +LDEPT
Sbjct: 887 VYILDEPT 894
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 26.6 bits (59), Expect = 7.2
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 37 NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTL 96
+ + S S D+ +K + + P L GR LVG G GKTT+
Sbjct: 12 KNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLN-------GRSMYLVGMMGSGKTTV 64
Query: 97 LRHIATR 103
+ +A
Sbjct: 65 GKIMARS 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 26.5 bits (59), Expect = 7.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
+VGP G GKT L + IA A
Sbjct: 50 MVGPPGTGKTLLAKAIAGEA 69
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 26.8 bits (60), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
G+R G+ +G GK+TLL I
Sbjct: 68 CGIGQRIGIFAGSGVGKSTLLGMIC 92
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 26.4 bits (59), Expect = 8.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
LVGP G GKT L + +A A
Sbjct: 49 LVGPPGTGKTLLAKAVAGEA 68
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 26.6 bits (58), Expect = 8.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 75 KQIASGRRYGLVGPNGHGKTTLLRHIATR 103
G L G G GK+T+ +A
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANL 32
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.4 bits (59), Expect = 8.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 82 RYGLVGPNGHGKTTLL 97
++G G GKT L+
Sbjct: 32 AVNIMGAIGSGKTLLI 47
>2fck_A Ribosomal-protein-serine acetyltransferase, putat;
ribosomal-protein structural genomics, PSI, protein
structure initiative; HET: MSE; 1.70A {Vibrio cholerae
o1 biovar eltor} SCOP: d.108.1.1
Length = 181
Score = 26.4 bits (59), Expect = 8.5
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 197 ELKSIEADAAE--PRARRILAGLGFTKEMQEKSTKEFSGGWR 236
EL +E ++ + G +E + ++G +
Sbjct: 131 ELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPK 172
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 26.4 bits (59), Expect = 8.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 82 RYGLVGPNGHGKTTLL 97
+ +G G GKT L+
Sbjct: 40 AFDFMGAIGSGKTLLI 55
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 8.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 85 LVGPNGHGKTTLLRHI 100
+ GP G G TTL + I
Sbjct: 50 INGPAGTGATTLTKFI 65
>1nsl_A Probable acetyltransferase; structural genomics, hexamer,
alpha-beta, PSI, protein struc initiative, midwest
center for structural genomics; 2.70A {Bacillus
subtilis} SCOP: d.108.1.1
Length = 184
Score = 26.1 bits (58), Expect = 9.1
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 201 IEADAAE--PRARRILAGLGFTKEMQEKSTKEFSGGWR 236
+ AA ++R + +GF +E + + +G
Sbjct: 131 VAICAAVGNEKSRAVPERIGFLEEGKARDGLYVNGMHH 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 26.2 bits (58), Expect = 9.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L GP GKT L IA
Sbjct: 69 LEGPPHSGKTALAAKIA 85
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 26.4 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
L+GP G GKT L + +AT A
Sbjct: 44 LLGPPGCGKTLLAKAVATEA 63
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 26.2 bits (57), Expect = 9.9
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
++G +G GK+++ IA
Sbjct: 23 VMGVSGSGKSSVGEAIAEA 41
>3pv9_D Putative uncharacterized protein PH1245; crispr, crispr-associated
CAS1, metallonuclease, DNAse, PROK system, immune
system, nuclease; 2.85A {Pyrococcus horikoshii}
Length = 322
Score = 26.3 bits (58), Expect = 9.9
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 148 LEQVEASDDS------AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSI 201
+ Q E + A + V KN + LK + ++L E+ ++
Sbjct: 89 IRQAEHYLNKEKRLFLAKSFVTGGTKNMERNLKNWGIKAKLSDYLDELNDARKITEIMNV 148
Query: 202 EADAA 206
EA
Sbjct: 149 EARIR 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.338
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,587,544
Number of extensions: 203699
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 217
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.7 bits)