RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2689
(262 letters)
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 78.3 bits (193), Expect = 8e-18
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 34/208 (16%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
+ V + LK V Q +G ++G +G GK+T LR I L PS ++
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAII 60
Query: 115 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLK 174
Q + D + ++ L + + Q + ++ +N ++
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ-----HFNLWSHMTVLENVMEAPI 115
Query: 175 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGG 234
+ L + + A RA + LA +G + Q K SGG
Sbjct: 116 QVLGLSKHD----------------------ARERALKYLAKVGIDERAQGKYPVHLSGG 153
Query: 235 WRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ RVS+ARAL +EP +LL DEPT+ LD
Sbjct: 154 QQQRVSIARALAMEPDVLLFDEPTSALD 181
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 74.1 bits (182), Expect = 1e-16
Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 36/187 (19%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
I G ++GP+G GK+T+L I L P+ ++ + L D
Sbjct: 27 NIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTEGEVYIDNIKTND---------LDDD 75
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+ + + Q + +L+A +N + L ++
Sbjct: 76 ELTKIRRDKIGFVFQ-----QFNLIPLLTALEN--------------------VELPLIF 110
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
++ + RA L + + SGG + RV++ARAL P ++L D
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 256 EPTNHLD 262
+PT LD
Sbjct: 171 QPTGALD 177
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 71.9 bits (176), Expect = 1e-15
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 48/201 (23%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
V SL + G L+GP+G GKTT LR IA L PS + ++ V
Sbjct: 19 VREMSLE--------VKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIYIGDKLVA 68
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLER 181
+ I + + ++ + L
Sbjct: 69 DPEK----------------------------------GIFVPPKDRDIAMVFQSYALYP 94
Query: 182 DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSL 241
+ + +L+ + + R R + LG T E+ + +E SGG R RV+L
Sbjct: 95 HMTVYDN---IAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVAL 150
Query: 242 ARALFLEPTLLLLDEPTNHLD 262
RA+ +P + L+DEP ++LD
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLD 171
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 68.6 bits (168), Expect = 2e-14
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 51/210 (24%)
Query: 58 VDIKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 112
V++K+EN + + + I G L+GP+G GKTT LR IA L P+
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGR 62
Query: 113 LLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKL 172
+ + +++ L + ++ AV ++ +N
Sbjct: 63 IYFGDRD---------VTYLPPKDRNISMV-----------FQSYAVWPHMTVYEN---- 98
Query: 173 LKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFS 232
++K D + R R L E+ + + S
Sbjct: 99 -------------------IAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLS 138
Query: 233 GGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
GG R RV++ARA+ +EP +LL+DEP ++LD
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 67.7 bits (165), Expect = 5e-14
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 30/187 (16%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+ G ++GPNG GK+TL+ I + + + D +
Sbjct: 26 SVNKGDVTLIIGPNGSGKSTLINVITG--FLKADEGRVYFENK-----DITNKEPAELYH 78
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
V+ + L+++ ++ + + + L + + +E
Sbjct: 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------------ 126
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+A +IL L + ++ E SGG V + RAL P ++++D
Sbjct: 127 ----------MVEKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 175
Query: 256 EPTNHLD 262
EP +
Sbjct: 176 EPIAGVA 182
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 65.7 bits (160), Expect = 2e-13
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 41/187 (21%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+ +G+ YG++G +G GK+TL+R + L P+ +L QE+ +
Sbjct: 27 HVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTEGSVLVDGQELTTLSE---------- 74
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
K ++ + Q LL + L L
Sbjct: 75 SELTKARRQIGMIFQHFN------------------LLSSRTVFGNVA-----LPL---- 107
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
EL + D + R +L+ +G + + SGG + RV++ARAL P +LL D
Sbjct: 108 -ELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 165
Query: 256 EPTNHLD 262
E T+ LD
Sbjct: 166 EATSALD 172
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 65.6 bits (160), Expect = 2e-13
Identities = 41/211 (19%), Positives = 77/211 (36%), Gaps = 46/211 (21%)
Query: 59 DIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
D++ N + + P L+ + +I +G+ LVG +G GK+T+ I
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEG 70
Query: 112 DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVK 171
+L ++ + L + + + Q N+ L D
Sbjct: 71 HILMDGHDL-------------REYTLASLRNQVALVSQ---------NVHLFNDTVANN 108
Query: 172 LLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231
+ ++ E + R+ D + ++ G + E
Sbjct: 109 IAYARTEEYSREQIEEAARMAYAMDFINKMDN--------------GLDTIIGENGV-LL 153
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL + +L+LDE T+ LD
Sbjct: 154 SGGQRQRIAIARALLRDSPILILDEATSALD 184
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 65.4 bits (159), Expect = 2e-13
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 45/187 (24%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+I G +GL+GPNG GKTT LR I+T ++
Sbjct: 24 EIEEGEIFGLIGPNGAGKTTTLRIIST----------------------------LIKPS 55
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
V + + E E + + L E + R+ G LR
Sbjct: 56 SGIVTVFGKNVVEEPHEV-------------RKLISYLPEEAGAYRNMQGIEYLRF---V 99
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+ + E R G ++++++ +S G ++ +ARAL + P L +LD
Sbjct: 100 AGFYASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSKGMVRKLLIARALMVNPRLAILD 158
Query: 256 EPTNHLD 262
EPT+ LD
Sbjct: 159 EPTSGLD 165
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 64.2 bits (156), Expect = 7e-13
Identities = 47/208 (22%), Positives = 76/208 (36%), Gaps = 51/208 (24%)
Query: 60 IKVENFSLS----PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
++++N + + K + I G VGP+G GK+TLLR IA L +S DL
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLF 58
Query: 115 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLK 174
E+ + +D + L S E + + L
Sbjct: 59 IGEKRM--NDTPPAERGVGMVFQSYALYPHLSVAENM----------------SFGLKLA 100
Query: 175 ECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGG 234
K ++ R ++ L + ++ K SGG
Sbjct: 101 GAKKEVINQ-------------------------RVNQVAEVLQLA-HLLDRKPKALSGG 134
Query: 235 WRMRVSLARALFLEPTLLLLDEPTNHLD 262
R RV++ R L EP++ LLDEP ++LD
Sbjct: 135 QRQRVAIGRTLVAEPSVFLLDEPLSNLD 162
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 63.3 bits (154), Expect = 1e-12
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 47/211 (22%)
Query: 59 DIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
I +++ S P LK + I G VG +G GK+TL+ I +S
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSG 73
Query: 112 DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVK 171
+L ++ + + + +N++ L+++ + L + NI+L
Sbjct: 74 QILIDGHNIK-------DFLTGSLRNQIGLVQQDNILFSDTVKE----NILLG------- 115
Query: 172 LLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231
DE ++ +D + ++ G+ E+ E+ +
Sbjct: 116 -----RPTATDEEVVEAAKMANAHDFIMNLPQ--------------GYDTEVGERGV-KL 155
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG + R+S+AR P +L+LDE T+ LD
Sbjct: 156 SGGQKQRLSIARIFLNNPPILILDEATSALD 186
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 61.5 bits (149), Expect = 6e-12
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 43/187 (22%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
++ G+ L+G NG GKTT L IA L +++ Q++ +N
Sbjct: 28 KVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPAHVIN------ 79
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
+ + +N +
Sbjct: 80 ------------------------------RMGIALVPEGRRIFPELTVYENLMMGAYNR 109
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
+ + I+ D + L KE ++ SGG + +++ RAL P LL++D
Sbjct: 110 KDKEGIKRDLEW--IFSLFPRL---KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164
Query: 256 EPTNHLD 262
EP+ L
Sbjct: 165 EPSLGLA 171
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 60.3 bits (146), Expect = 2e-11
Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 39/187 (20%)
Query: 76 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+ GP+G GK+T+ + P++ ++ Q ++ NI L
Sbjct: 24 EAQPNSIIAFAGPSGGGKSTIFSLLE--RFYQPTAGEITIDGQPID-------NISLENW 74
Query: 136 KNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVY 195
++++ + + S + + N+ + +
Sbjct: 75 RSQIGFVSQDSAI----MAGTIRENLTYGLEGDYTDEDLWQ------------------- 111
Query: 196 DELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLD 255
D A R+ E+ E+ + SGG R R+++ARA P +L+LD
Sbjct: 112 ------VLDLAFARSFVENMPDQLNTEVGERGV-KISGGQRQRLAIARAFLRNPKILMLD 164
Query: 256 EPTNHLD 262
E T LD
Sbjct: 165 EATASLD 171
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 58.0 bits (140), Expect = 6e-11
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 56/207 (27%)
Query: 60 IKVENFSLS---PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 115
+++ + S+ P L+ + I G GPNG GKTTLL+ I+T P +++Y
Sbjct: 3 LEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEIIY 60
Query: 116 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKE 175
+ K ++ L E
Sbjct: 61 NGVPITKV-------------------------------------------KGKIFFLPE 77
Query: 176 CSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGW 235
+ R S ++ L+ +K + L + +K E S G
Sbjct: 78 EIIVPRKISVEDYLKAVASLYGVK-----VNKNEIMDALESVEVLD--LKKKLGELSQGT 130
Query: 236 RMRVSLARALFLEPTLLLLDEPTNHLD 262
RV LA L + + +LD+P +D
Sbjct: 131 IRRVQLASTLLVNAEIYVLDDPVVAID 157
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 58.4 bits (141), Expect = 6e-11
Identities = 45/211 (21%), Positives = 67/211 (31%), Gaps = 47/211 (22%)
Query: 59 DIKVENFSLS------PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
DI N L + I G G+VG +G GK+TL + I IP +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENG 58
Query: 112 DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVK 171
+L ++ A + L ++ + Q + VL
Sbjct: 59 QVLIDGHDL-------------ALADPNWLRRQVGVVLQ---------DNVLLNRSII-- 94
Query: 172 LLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEF 231
DN K I A I + +
Sbjct: 95 --------------DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 140
Query: 232 SGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R R+++ARAL P +L+ DE T+ LD
Sbjct: 141 SGGQRQRIAIARALVNNPKILIFDEATSALD 171
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 58.0 bits (140), Expect = 8e-11
Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 58/214 (27%)
Query: 57 SVDIKVENFSLSPCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 115
S+ +++++ + S L + ++ +G LVGPNG GK+TLL +A + +
Sbjct: 1 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQF 57
Query: 116 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKE 175
Q +E + KL + L Q +
Sbjct: 58 AGQPLE-------------AWSATKLALHRAYLSQQQ----------------------- 81
Query: 176 CSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGW 235
T V+ L + D +AG + +ST + SGG
Sbjct: 82 -----------TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGE 130
Query: 236 RMRVSLARAL-------FLEPTLLLLDEPTNHLD 262
RV LA + LLLLDEP N LD
Sbjct: 131 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 56.4 bits (136), Expect = 3e-10
Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 47/212 (22%)
Query: 59 DIKVENFSLS-------PCLK-VQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 110
++ ++ S + L+ + + G LVGPNG GK+T+ + L P+
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ--NLYQPTG 68
Query: 111 IDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRV 170
LL + + L ++ + + Q + +
Sbjct: 69 GQLLLDGKPL-------------PQYEHRYLHRQVAAVGQ---------EPQVFGRSLQE 106
Query: 171 KLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKE 230
+ LT+ + A I +++ +
Sbjct: 107 NI---------------AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ 151
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
SGG R V+LARAL +P +L+LD+ T+ LD
Sbjct: 152 LSGGQRQAVALARALIRKPCVLILDDATSALD 183
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 52.6 bits (126), Expect = 8e-09
Identities = 22/76 (28%), Positives = 32/76 (42%)
Query: 187 NQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALF 246
+ YDE + A + I + + SGG R R+SLARA++
Sbjct: 115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174
Query: 247 LEPTLLLLDEPTNHLD 262
+ L LLD P +LD
Sbjct: 175 KDADLYLLDSPFGYLD 190
Score = 43.4 bits (102), Expect = 9e-06
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 42 QSSKASSKRSTVDDNSVDIKVENFSLS--PCLK-VQKQIASGRRYGLVGPNGHGKTTLLR 98
+ + S+ + ++ + L P LK + I G + G G GKT+LL
Sbjct: 21 EKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLM 80
Query: 99 HIA 101
I
Sbjct: 81 LIL 83
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 52.0 bits (124), Expect = 1e-08
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 49/201 (24%)
Query: 62 VENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
++N +++ I +G R+G++GP+G GKTT +R IA L +PS+ +L + ++ V
Sbjct: 21 LDNVNIN--------IENGERFGILGPSGAGKTTFMRIIAG--LDVPSTGELYFDDRLVA 70
Query: 122 ASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSKLER 181
++ ++ + Q A+ L+A +N L
Sbjct: 71 SNG----------KLIVPPEDRKIGMVFQ-----TWALYPNLTAFENIAFPLT------- 108
Query: 182 DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSL 241
+ + R + L + +E SG + RV+L
Sbjct: 109 ----------------NMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVAL 151
Query: 242 ARALFLEPTLLLLDEPTNHLD 262
ARAL +P+LLLLDEP ++LD
Sbjct: 152 ARALVKDPSLLLLDEPFSNLD 172
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 50.0 bits (119), Expect = 5e-08
Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 57/210 (27%)
Query: 57 SVDIKVE----NFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 112
+ ++ E NF L+ ++ + L+GP G GK+ L IA + P +
Sbjct: 2 FLKVRAEKRLGNFRLNVDFEMGRDY-----CVLLGPTGAGKSVFLELIAG--IVKPDRGE 54
Query: 113 LLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKL 172
+ ++ L ++ + + +
Sbjct: 55 VRLNGADI---------TPLPPERRGIGFVPQ---------------------------- 77
Query: 173 LKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFS 232
+ + N ++ +E D R R + LG + ++ S
Sbjct: 78 --DYALFPHLSVYRNI---AYGLRNVERVERD---RRVREMAEKLGIA-HLLDRKPARLS 128
Query: 233 GGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
GG R RV+LARAL ++P LLLLDEP + +D
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVD 158
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 45.8 bits (108), Expect = 1e-06
Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 57/204 (27%)
Query: 59 DIKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118
+ ++N SL + SG + ++GP G GKT L IA +P S +L +
Sbjct: 13 NFSLDNLSLK--------VESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDGK 62
Query: 119 EVEASDDSAVNIVLSADKNRVKLLKECSKLEQVEASDDSAVNIVLSADKNRVKLLKECSK 178
+ + + + + Q + ++ ++ KN ++ K
Sbjct: 63 D---------------VTDLSPEKHDIAFVYQ-----NYSLFPHMNVKKNLEFGMRMK-K 101
Query: 179 LERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMR 238
++ + + R ++ L ++ SGG + R
Sbjct: 102 IKDPKRVLDTARDLKIEHLLD--------------------------RNPLTLSGGEQQR 135
Query: 239 VSLARALFLEPTLLLLDEPTNHLD 262
V+LARAL P +LLLDEP + LD
Sbjct: 136 VALARALVTNPKILLLDEPLSALD 159
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 42.4 bits (98), Expect = 3e-05
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 222 EMQEKSTKEFSGGWRMRVSLARALFL------EPTLLLLDEPTNHLD 262
E +E+ SGG R+ + LA L + E +LL+LDEPT +LD
Sbjct: 193 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 239
Score = 37.0 bits (84), Expect = 0.001
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSI 111
++G NG GK++LL I L P I
Sbjct: 27 LIIGQNGSGKSSLLDAI-LVGLYWPLRI 53
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 42.1 bits (97), Expect = 3e-05
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 231 FSGGWRMRVSLARALFLEPTLLLLDEPTNHLD 262
+ G R++++ L E +LL+LDEPT +LD
Sbjct: 285 IALGLAFRLAMSLYLAGEISLLILDEPTPYLD 316
Score = 32.9 bits (73), Expect = 0.034
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 84 GLVGPNGHGKTTLLRHI 100
++G NG GK++LL I
Sbjct: 27 LIIGQNGSGKSSLLDAI 43
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 38.8 bits (89), Expect = 2e-04
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 82 RYGLVGPNGHGKTTLLRHIA 101
+ + G G GKTTL++ I
Sbjct: 2 KIIITGEPGVGKTTLVKKIV 21
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 35.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 74 QKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 112
+ +I + +VG GK+TL I + A+ S I
Sbjct: 2 KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP 40
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 35.5 bits (80), Expect = 0.004
Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 1/186 (0%)
Query: 78 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN 137
++G GK+++++ +DL E+ S + +
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINK 86
Query: 138 RVKLLKECSK-LEQVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 196
VK L K L+ ++ I + ++ + S DN + + +
Sbjct: 87 LVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 146
Query: 197 ELKSIEADAAEPRARRILAGLGFTKEMQEKSTKEFSGGWRMRVSLARALFLEPTLLLLDE 256
EL + P L K + S + LF + +
Sbjct: 147 ELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK 206
Query: 257 PTNHLD 262
P + +
Sbjct: 207 PFSREE 212
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.006
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 117
R L GP G GKTTL+ + + +D Y E
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 32.5 bits (73), Expect = 0.024
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 83 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129
+ +VG GKTTL+ A+ + +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGV 50
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 32.6 bits (73), Expect = 0.024
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 84 GLVGPNGHGKTTLLRHIATR 103
+G GKTTLL+ +
Sbjct: 6 AFAAWSGTGKTTLLKKLIPA 25
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.8 bits (73), Expect = 0.028
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 72 KVQKQIASGR---RYGLVGPNGHGKTTLLRHIA 101
K+ +GR + G G L+ ++
Sbjct: 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALS 45
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 32.3 bits (72), Expect = 0.047
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 84 GLVGPNGHGKTTLLRHI 100
VG G GKTTL
Sbjct: 4 VFVGTAGSGKTTLTGEF 20
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 31.5 bits (70), Expect = 0.062
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
GR L GP+ GK+T++R + R + S+
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.3 bits (69), Expect = 0.098
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRA 104
I +G + G GKT + +A
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 30.5 bits (67), Expect = 0.11
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
G + + G GK++LL +A R AI + I
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDI 32
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.9 bits (68), Expect = 0.11
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 118
+VG GK+TLL ++ +A S ++
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR 43
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.8 bits (68), Expect = 0.12
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 72 KVQKQIASGR--RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 129
++K + S GP G GKT+ + + + L P + E+ ASD+ ++
Sbjct: 23 VLKKTLKSANLPHMLFYGPPGTGKTSTILALT-KELYGPDLMK--SRILELNASDERGIS 79
Query: 130 IVLSADKNRVKLLKECSKLEQVEASDDSAVNIVL 163
IV KN +L +E I++
Sbjct: 80 IVREKVKNFARLTVSKPSKHDLENYPCPPYKIII 113
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.12
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRA 104
+ +G L G GK+ L +A
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTC 58
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.1 bits (66), Expect = 0.17
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSI 111
+VG GK+TL + + AI
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDE 31
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 30.5 bits (69), Expect = 0.18
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRA 104
A G + GL G G GKT L+ +
Sbjct: 65 YAKGGKIGLFGGAGVGKTVLIMELINNV 92
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.9 bits (66), Expect = 0.18
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 79 SGRRYGLVGPNGHGKTTLLRHIATR 103
G L G G GK+T+ +A
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANL 27
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 30.5 bits (67), Expect = 0.19
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 60 IKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLL 97
+++ NF S + ++GPNG GK+ ++
Sbjct: 6 LELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMM 42
Score = 26.6 bits (57), Expect = 3.5
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 219 FTKEMQEKSTKEFSGGWRMRVSLARALFL--EPTLLLLDEPTNHLD 262
K ++ ++L A+ +LDE LD
Sbjct: 323 PLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD 368
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.7 bits (65), Expect = 0.22
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSI 111
+VG GK+TLL + + ++I S
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRK 36
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.3 bits (67), Expect = 0.22
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 121
G G GKT L+ A A L E+
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 67
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 29.7 bits (65), Expect = 0.23
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119
G+ G HGKTTL + + +A S+ D L Q+
Sbjct: 9 GIFGHIDHGKTTLSKVL--TEIASTSAHDKLPESQK 42
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.23
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
LVG G GKTT +A
Sbjct: 15 LVGLQGSGKTTTAAKLALY 33
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 30.1 bits (67), Expect = 0.28
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKE 144
++GP G GKT + R +A + P EV +I+ + +KL+++
Sbjct: 54 MIGPTGVGKTEIARRLA-KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQ 112
Query: 145 CSKLEQVEASDDSAVNIVLSADKNRVK 171
+ ++D A +L A K
Sbjct: 113 QEIAKNRARAEDVAEERILDALLPPAK 139
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.28
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
+VG NG GKTT + +
Sbjct: 11 VVGVNGVGKTTTIAKLGRYY 30
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 30.1 bits (67), Expect = 0.29
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 65 FSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 109
F++ + ++ + R ++ HGK+TL + RA I +
Sbjct: 2 FTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISA 46
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.9 bits (66), Expect = 0.30
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSID 112
L G G GKT+L I ID
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVID 64
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.7 bits (65), Expect = 0.30
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATR 103
+ ++G GK+ L+ +A
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAV 30
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 0.32
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
LVG GKTT + IA+
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.5 bits (65), Expect = 0.32
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+ GP+G GK+TLL+ +
Sbjct: 6 ISGPSGTGKSTLLKKLFAE 24
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.2 bits (64), Expect = 0.37
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALA 106
+ GR + G +G GKT +
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 52
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.3 bits (64), Expect = 0.39
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 83 YGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 133
YG +G G GKTTL + R + L + V A + + +LS
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILS 99
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.2 bits (64), Expect = 0.40
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+ G G G TT +
Sbjct: 6 VTGVPGVGSTTSSQLAMDN 24
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.1 bits (64), Expect = 0.41
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
L GP+G GK+TLL+ +
Sbjct: 5 LSGPSGAGKSTLLKKLFQE 23
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.1 bits (64), Expect = 0.42
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
L+G +G G+ + + T+
Sbjct: 8 LLGAHGVGRRHIKNTLITK 26
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 29.1 bits (64), Expect = 0.43
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 81 RRYGLVGPNGHGKTTLLRHI 100
R LVG G GKTTL +
Sbjct: 3 RTVALVGHAGSGKTTLTEAL 22
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.8 bits (63), Expect = 0.51
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+ G G GK+T+L +
Sbjct: 6 VTGIPGVGKSTVLAKVKEI 24
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 28.4 bits (62), Expect = 0.54
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
LVG G GK+T+ R +A
Sbjct: 6 LVGLPGSGKSTIGRRLAKA 24
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 28.9 bits (63), Expect = 0.57
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 85 LVGPNGHGKTTLL 97
+VGPNG GK+ ++
Sbjct: 29 IVGPNGSGKSNII 41
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.1 bits (61), Expect = 0.59
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 120
+G G GK+T R + + Y + +
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM 42
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.4 bits (62), Expect = 0.63
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 79 SGRRYGLVGPNGHGKTTLLRHIATR 103
+ R L G + GK+ ++R + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSV 26
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.3 bits (62), Expect = 0.71
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVK 140
VG G GK+T ++ A + + D L Q +S +A L K V
Sbjct: 19 AVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAA----LRQGKRVVI 70
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 0.76
Identities = 10/74 (13%), Positives = 19/74 (25%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADK 136
+ S G G GKT ++ + E + AV I
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 90
Query: 137 NRVKLLKECSKLEQ 150
++++
Sbjct: 91 RPERIMQMAEHAGI 104
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 28.5 bits (63), Expect = 0.77
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 81 RRYGLVGPNGHGKTTLLRHI 100
R G+ GKTT I
Sbjct: 7 RNIGIAAHIDAGKTTTTERI 26
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 0.82
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 79 SGRRYGLV-GPNGHGKTTLLRHIATRALAIPSSI 111
+ R+ LV G G GK+ LLR +A L +
Sbjct: 48 AEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRM 81
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.1 bits (62), Expect = 0.89
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+VG NG GKTT + +A +
Sbjct: 14 MVGVNGVGKTTTIGKLARQ 32
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.4 bits (63), Expect = 0.91
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I G+R +V P GKT LL++IA
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIA 64
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 28.0 bits (61), Expect = 0.92
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+VG G G TT+ R +A
Sbjct: 7 MVGARGCGMTTVGRELARA 25
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.9 bits (61), Expect = 0.97
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
L G G GKTTLLRHI
Sbjct: 8 LTGFLGAGKTTLLRHILN 25
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 1.00
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATR 103
G Y + P+G GK++L++ +
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKT 25
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.7 bits (60), Expect = 1.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 79 SGRRYGLVGPNGHGKTTLLRHIATR 103
Y L+G +G GK+ + +A +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 85 LVGPNGHGKTTLLRHIATRAL 105
+VG NG GKTT +A +
Sbjct: 16 VVGVNGTGKTTSCGKLAKMFV 36
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.6 bits (60), Expect = 1.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 82 RYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
R +VG GK+TLL + AI + I
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDI 31
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 1.1
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
LVG G GK T +A
Sbjct: 17 LVGVQGTGKATTAGKLAYF 35
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of
F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 27.8 bits (62), Expect = 1.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 77 IASGRRYGLVGPNGHGKTTLL 97
I G+R ++G GKT++
Sbjct: 65 IGRGQRELIIGDRQTGKTSIA 85
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 85 LVGPNGHGKTTLLRHIATRALAI 107
+G + GKTTLL + LA
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLAT 27
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.9 bits (61), Expect = 1.2
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
++++ + ++G G GK++ + I + S
Sbjct: 24 NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF 63
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 1.3
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLL 114
+VG GKT + + + I
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREF 36
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.4 bits (59), Expect = 1.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
LVGP G GK+T+ R +A +
Sbjct: 7 LVGPMGAGKSTIGRQLAQQ 25
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.7 bits (60), Expect = 1.3
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIA 101
I + + G G GKT L +A
Sbjct: 33 IETQAITEVFGEFGSGKTQLAHTLA 57
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.4 bits (59), Expect = 1.3
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 119
L G GK + R + L
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 45
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 27.2 bits (59), Expect = 1.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+G G GK+TL R +A
Sbjct: 5 FIGFMGSGKSTLARALAKD 23
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.7 bits (60), Expect = 1.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 85 LVGPNGHGKTTLLRHIA 101
+ +G GK+T +R A
Sbjct: 40 VTSGSGMGKSTFVRQQA 56
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 1.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 85 LVGPNGHGKTTLLRHIA 101
LV P G GK+ L +A
Sbjct: 34 LVSPGGAGKSMLALQLA 50
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 27.8 bits (61), Expect = 1.5
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 84 GLVGPNGHGKTT---LLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 134
GLV G G L + +P +ID + D+A+N V+ A
Sbjct: 96 GLVVIGGDGSYQGAKKLTEHGFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDA 149
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 1.5
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 81 RRYGLVGPNGHGKTTLLRHIAT 102
R VG GKT L + T
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLT 22
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.2 bits (59), Expect = 1.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
L+G + GKTTLL+ +A+
Sbjct: 21 LLGLDNAGKTTLLKQLAS 38
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 27.3 bits (59), Expect = 1.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAIPS 109
GLVG GK++LL + I
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAHPKIAP 30
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 27.2 bits (60), Expect = 1.7
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 60 IKVENFSLSPCLKVQKQIASGRRYGLVGPNGHGKTTLLRHI 100
+ + + P + G+R ++G GKT +
Sbjct: 55 LIAIDAMI-PVGR-------GQRELIIGDRQTGKTAVATDT 87
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 27.2 bits (59), Expect = 1.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 85 LVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 135
+ G G GK+T +R +A LL + VE S+ N+ + D
Sbjct: 33 VFGDRGTGKSTAVRALA----------ALLPEIEAVEGCPVSSPNVEMIPD 73
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.0 bits (58), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAI 107
++G HGKTTLL HI A+A
Sbjct: 9 SVLGHVDHGKTTLLDHIRGSAVAS 32
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 27.4 bits (59), Expect = 2.0
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATRA 104
I S G GKT L + A
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTA 61
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.9 bits (58), Expect = 2.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+ GP G GK+T + +A +
Sbjct: 7 ITGPAGVGKSTTCKRLAAQ 25
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.0 bits (58), Expect = 2.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
++G +G GKTT+L +
Sbjct: 10 ILGLDGAGKTTILYRLQV 27
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.5 bits (57), Expect = 2.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
+VG + GKTT+L +
Sbjct: 5 MVGLDAAGKTTILYKLKL 22
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 27.1 bits (59), Expect = 2.1
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 74 QKQIASGRRYGLVGPNGHGKTTLLRHI 100
+K++ R+ G GK+TL+ +
Sbjct: 6 RKEM---LRFLTCGNVDDGKSTLIGRL 29
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 26.9 bits (58), Expect = 2.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
+ GP GKT+LL + T
Sbjct: 8 IAGPQNSGKTSLLTLLTTD 26
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.1 bits (58), Expect = 2.2
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 72 KVQKQIASGRR---YGLVGPNGHGKTTLLRHIA 101
++ R L GPNG GK T +
Sbjct: 22 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL 54
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 27.2 bits (59), Expect = 2.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 85 LVGPNGHGKTTLL 97
+VG NG GK+ +
Sbjct: 31 IVGANGSGKSNIG 43
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.8 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAI 107
GLVG GK+TLL +++ I
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKPKI 28
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.6 bits (57), Expect = 2.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 85 LVGPNGHGKTTLLRHIA 101
+G + GKTTLL +
Sbjct: 18 FLGLDNAGKTTLLHMLK 34
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.4 bits (57), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
L G G GKTTL + +A++
Sbjct: 9 LTGTPGVGKTTLGKELASK 27
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 26.2 bits (56), Expect = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
L+G G GK+ L R
Sbjct: 6 LLGAPGVGKSALARIFGGV 24
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.2 bits (56), Expect = 2.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 85 LVGPNGHGKTTLLRHIA 101
++G + GKTT+L+
Sbjct: 7 MLGLDNAGKTTILKKFN 23
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.5 bits (57), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
++G + GKTT+L +
Sbjct: 17 MLGLDAAGKTTILYKLKL 34
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.3 bits (56), Expect = 3.3
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
G G + GK++ L + + +S
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSK 47
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.1 bits (56), Expect = 3.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 85 LVGPNGHGKTTLLRHIA 101
+VG + GKTT+L +
Sbjct: 20 IVGLDNAGKTTILYQFS 36
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.2 bits (56), Expect = 3.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 85 LVGPNGHGKTTLLRHIATR 103
L G +G GKTT+ +
Sbjct: 24 LTGLSGAGKTTVSMALEEY 42
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.1 bits (56), Expect = 3.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 80 GRRYGLVGPNGHGKTTLLRHIATR 103
G + G G GKT++ IA
Sbjct: 5 GINILITGTPGTGKTSMAEMIAAE 28
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 26.4 bits (57), Expect = 3.7
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 111
+ + R G+ G G GK+T L + +
Sbjct: 46 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 26.3 bits (58), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 81 RRYGLVGPNGHGKTTLLRHIATRA 104
+ LVGP G GKT L R +A A
Sbjct: 43 KGVLLVGPPGVGKTHLARAVAGEA 66
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.1 bits (56), Expect = 4.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 85 LVGPNGHGKTTLLRHI 100
++G +G GKTT+L +
Sbjct: 22 ILGLDGAGKTTILYRL 37
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 25.8 bits (55), Expect = 4.5
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 87 GPNGHGKTTLLRHIATR 103
G G GKTT L H
Sbjct: 16 GNIGSGKTTYLNHFEKY 32
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 25.9 bits (56), Expect = 4.6
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 84 GLVGPNGHGKTTLLRHI 100
++G HGK+TL+ +
Sbjct: 7 IVIGHVDHGKSTLVGRL 23
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.9 bits (55), Expect = 4.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 85 LVGPNGHGKTTLLRHIA 101
L+G G GKT LR +
Sbjct: 48 LLGRPGTGKTVTLRKLW 64
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 25.9 bits (57), Expect = 5.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 85 LVGPNGHGKTTLLRHIATRA 104
+VGP G GKT L + IA A
Sbjct: 50 MVGPPGTGKTLLAKAIAGEA 69
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 25.5 bits (55), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 85 LVGPNGHGKTTLLRHIAT 102
L+G G GKT L+R
Sbjct: 10 LIGNAGVGKTCLVRRFTQ 27
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 25.3 bits (54), Expect = 6.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 91 HGKTTLLRHI 100
HGKTTL + +
Sbjct: 16 HGKTTLTKAL 25
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.7 bits (56), Expect = 6.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 77 IASGRRYGLVGPNGHGKTTLLRHIATR 103
+ + R + GP+G GKTT + +
Sbjct: 1 MPTLLRVYIDGPHGMGKTTTTQLLVAL 27
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 25.6 bits (55), Expect = 6.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 72 KVQKQIASGRRYGLVGPNGHGKTTLL 97
V Q R G+ G G GK+T +
Sbjct: 43 AVLPQTGRAIRVGITGVPGVGKSTTI 68
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 25.4 bits (54), Expect = 7.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 85 LVGPNGHGKTTLLRHI 100
L G NG GK+T +
Sbjct: 29 LSGGNGAGKSTTMAAF 44
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.0 bits (53), Expect = 9.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 84 GLVGPNGHGKTTLLRHIATRALAI 107
G + GK+TL+ + + +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRR 27
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 25.0 bits (54), Expect = 9.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 84 GLVGPNGHGKTTLLRHI 100
G +G HGKTTL I
Sbjct: 7 GTIGHVDHGKTTLTAAI 23
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 24.9 bits (54), Expect = 10.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 84 GLVGPNGHGKTTLLRHI 100
G +G HGKTTL +
Sbjct: 7 GTIGHVDHGKTTLTAAL 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.338
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 842,524
Number of extensions: 36169
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 158
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)