Query psy269
Match_columns 345
No_of_seqs 205 out of 370
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:42:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yue_A Protein neuralized; str 100.0 1.2E-54 4.2E-59 384.3 16.1 161 30-190 4-164 (168)
2 2e63_A KIAA1787 protein; struc 100.0 4.9E-47 1.7E-51 336.2 16.4 147 33-186 5-170 (170)
3 2yue_A Protein neuralized; str 99.9 4.2E-23 1.4E-27 182.4 8.9 81 259-341 6-86 (168)
4 2e63_A KIAA1787 protein; struc 99.8 9.7E-22 3.3E-26 174.0 8.4 79 259-340 4-84 (170)
5 3toj_A SET1/ASH2 histone methy 97.9 0.00019 6.3E-09 64.9 14.2 137 35-186 13-173 (213)
6 2yyo_A SPRY domain-containing 97.9 0.00051 1.7E-08 60.0 15.4 132 42-186 8-160 (171)
7 3emw_A SPRY domain-containing 97.6 0.0017 6E-08 58.7 15.1 143 34-186 43-213 (217)
8 2jk9_A SPRY domain-containing 97.1 0.013 4.4E-07 52.4 15.3 145 34-186 32-204 (212)
9 2afj_A Gene rich cluster, C9 g 96.7 0.007 2.4E-07 54.8 9.7 143 34-186 40-210 (226)
10 2vok_A 52 kDa RO protein; poly 95.1 1.4 4.7E-05 38.7 16.7 132 34-178 10-171 (188)
11 3uv9_A TRIM5alpha, tripartite 95.1 0.29 9.9E-06 43.0 12.2 133 44-187 23-183 (186)
12 2fbe_A Predicted: similar to R 93.6 3.7 0.00013 36.3 16.4 141 34-187 11-185 (201)
13 2wl1_A Pyrin, marenostrin; amy 93.2 3.9 0.00013 35.8 15.6 131 34-177 14-174 (191)
14 4b3n_A Maltose-binding peripla 72.3 36 0.0012 34.4 12.5 134 44-185 421-601 (602)
15 3kb5_A Tripartite motif-contai 70.3 53 0.0018 28.4 16.3 132 34-177 13-179 (193)
16 2p9r_A Alpha-2-M, alpha-2-macr 35.8 25 0.00085 26.8 3.0 43 290-332 3-48 (102)
17 2p9r_A Alpha-2-M, alpha-2-macr 32.4 38 0.0013 25.7 3.5 25 62-86 3-28 (102)
18 3toj_A SET1/ASH2 histone methy 25.6 1.4E+02 0.0049 25.9 6.6 56 267-327 19-75 (213)
19 1n0w_B Breast cancer type 2 su 23.8 15 0.00053 23.3 -0.1 17 34-50 5-21 (35)
20 4fxk_A Complement C4 beta chai 23.7 62 0.0021 32.5 4.3 45 288-332 117-165 (656)
21 4fxk_A Complement C4 beta chai 21.4 72 0.0025 32.0 4.2 29 59-87 116-147 (656)
22 4doo_A Chalcone-flavanone isom 20.4 88 0.003 27.2 4.1 28 133-160 141-168 (205)
23 4a0t_A Tail fiber protein; vir 20.3 61 0.0021 28.0 2.8 28 28-55 75-103 (227)
No 1
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-54 Score=384.35 Aligned_cols=161 Identities=59% Similarity=1.166 Sum_probs=155.2
Q ss_pred CCCCCcccccCCCCceEEecCCeeEEecccCCCeEEEcCCcCCCCCEEEEEEEeEcCCcceeeEEeeeecCCCCcCcCCC
Q psy269 30 NNLPPLYFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP 109 (345)
Q Consensus 30 ~~~~~l~FH~~~G~nV~Ls~~~~~A~R~~sf~~giVFS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~LP 109 (345)
...++|+||+.||+||+|++++++|+|.++||||||||+|||++||+|+|||++++.+|+|+|+||||+|||++++.+||
T Consensus 4 ~~~~~l~FH~~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP 83 (168)
T 2yue_A 4 GSSGPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLP 83 (168)
T ss_dssp CCCSSCCEEEEECTTEEECCSSCCEEECSCSSCCEEEESSCCCSSCCEEEEEEECCSSSSSCCEEEEESSCGGGTTTCCC
T ss_pred CCCCCcccccccCCCeEECCCCcEEEecccCCceEEEECCCCcCCCEEEEEEEeecCCcceeEEEeeeecCHHHcCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999976789
Q ss_pred CCCCCCcccccceeEecccccccCCCcEEEEEEcCCceEEEEEcCCcceeeeecCCCCCceEEEEeccCCceEEEEecCc
Q psy269 110 RYVCPDLTNKPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAIQLIDSR 189 (345)
Q Consensus 110 ~~a~pdL~~~~~~W~~~~~~~~~~~g~~l~~~~~~~G~l~~~VNG~~~G~~~~~V~~~~pLwAvvDvYG~t~~V~ll~~~ 189 (345)
++|||||.++++||+++++++|+..|++|+||++++|+|||+|||+++|+++++||+++||||||||||+|+||+|++++
T Consensus 84 ~~a~~dL~~~~~~W~~~l~~~~~~~g~~l~f~v~~~G~l~~~iNg~~~g~~~~~V~~~~pLwavvDvyG~t~~V~il~~~ 163 (168)
T 2yue_A 84 KYACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCTGIEFLDSR 163 (168)
T ss_dssp SSSSSHHHHSTTBCCEECCSTTCCSSCEEEEEECTTSEEEEEESSCEEEEEEECCCCSSCCEEEEECCSSCSEEEEECHH
T ss_pred CcCchHHhcCCCEEEEEeccccccCCCEEEEEEcCCCEEEEEECCCccEEEEcCCCCCCceEEEEEccCCeEEEEEecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q psy269 190 A 190 (345)
Q Consensus 190 ~ 190 (345)
.
T Consensus 164 ~ 164 (168)
T 2yue_A 164 I 164 (168)
T ss_dssp H
T ss_pred e
Confidence 3
No 2
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.9e-47 Score=336.24 Aligned_cols=147 Identities=30% Similarity=0.525 Sum_probs=136.8
Q ss_pred CCcccccCCCCceEEecCCeeEEec---ccCCCeEEEcCCcCCCCCEEEEEEEeEcCCcceeeEEeeeecCCCCcCcCCC
Q psy269 33 PPLYFHQVHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINEKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP 109 (345)
Q Consensus 33 ~~l~FH~~~G~nV~Ls~~~~~A~R~---~sf~~giVFS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~LP 109 (345)
.+++||+.||+||+|++++++|+|. ++||||||||+|||++||+|+|||++++.+|+|+|+||||+|||++++ ||
T Consensus 5 ~~l~FH~~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~--lP 82 (170)
T 2e63_A 5 SSGELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSVLD--FP 82 (170)
T ss_dssp CSSCCCSCCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTCEEEEEEEEECCSSCCCCEEEEESSCTTSCC--CC
T ss_pred cccccccccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCCEEEEEEEeecCCcceeEEEEEEccChhhcc--CC
Confidence 4689999999999999999999998 699999999999999999999999999999999999999999999997 69
Q ss_pred CCCCCCcccccceeEe----------cccccccC------CCcEEEEEEcCCceEEEEEcCCcceeeeecCCCCCceEEE
Q psy269 110 RYVCPDLTNKPGYWAK----------ALAERFAD------QETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAM 173 (345)
Q Consensus 110 ~~a~pdL~~~~~~W~~----------~~~~~~~~------~g~~l~~~~~~~G~l~~~VNG~~~G~~~~~V~~~~pLwAv 173 (345)
+++ ++| +++||+. .++|+|+. .||+|+||++++|+|||+|||+++|+++++|+ +|||||
T Consensus 83 ~~~-~~L--~~~~Wv~~~~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~G~l~~~iNg~~~g~~~~~ip--~~Lwav 157 (170)
T 2e63_A 83 SSA-TGL--KGGSWVVSGCSVLRDGRSVLEEYGQDLDQLGEGDRVGVERTVAGELRLWVNGRDCGVAATGLP--PRVWAV 157 (170)
T ss_dssp SSG-GGC--CSSEEEESSSEEEESSCEEEESCSSCGGGCCSSCCEEEEECTTSCEEEEESSCEEEEEECCCC--SCEEEE
T ss_pred CCh-hhC--CCCeEEEeccccccCCcccchhccccccccCCCCEEEEEEcCCcEEEEEECCccceeeEcCCC--CcEEEE
Confidence 986 788 4599983 45677874 89999999999999999999999999999887 699999
Q ss_pred EeccCCceEEEEe
Q psy269 174 FDIYGNSTAIQLI 186 (345)
Q Consensus 174 vDvYG~t~~V~ll 186 (345)
|||||+|+||+|+
T Consensus 158 vDvyG~t~~V~iv 170 (170)
T 2e63_A 158 VDLYGKCTQITVL 170 (170)
T ss_dssp EECCTTEEEEEEC
T ss_pred EEccCCEEEEEEC
Confidence 9999999999986
No 3
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=99.88 E-value=4.2e-23 Score=182.39 Aligned_cols=81 Identities=32% Similarity=0.601 Sum_probs=76.8
Q ss_pred CCCCccccCCCCcEEEcCCCeeEEeccCCCCCeEEEeCCCCCCCCeEEEEEeeeCCCcccceEEeeeeeCCCCCCCCCCC
Q psy269 259 LVPLPFHRTIGRNVRLSNDRTIASRRDTEFSQGYVFTGRPVQLGEKIVIQVLETESRYYGALALGLTSCNPASLKPSVFL 338 (345)
Q Consensus 259 ~~~l~FH~~~G~~V~Ls~~~~~A~R~~~~f~~glVfS~RPL~~~E~~~vrI~~~~~~w~GsL~~GvT~~~P~~L~~~~Lp 338 (345)
..+|+||+.||+||+|++++++|+|. ++|++|||||+|||+++|+|+|||++.+.+|+|+|+||||+|||++|+. +||
T Consensus 6 ~~~l~FH~~~G~nI~L~~~~~~A~R~-~sf~~givFS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~-~lP 83 (168)
T 2yue_A 6 SGPLQFHSVHGDNIRISRDGTLARRF-ESFCRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEG-TLP 83 (168)
T ss_dssp CSSCCEEEEECTTEEECCSSCCEEEC-SCSSCCEEEESSCCCSSCCEEEEEEECCSSSSSCCEEEEESSCGGGTTT-CCC
T ss_pred CCCcccccccCCCeEECCCCcEEEec-ccCCceEEEECCCCcCCCEEEEEEEeecCCcceeEEEeeeecCHHHcCC-CCC
Confidence 57899999999999999999999998 7999999999999999999999999999999999999999999999986 788
Q ss_pred ccc
Q psy269 339 LSS 341 (345)
Q Consensus 339 ~~~ 341 (345)
.+.
T Consensus 84 ~~a 86 (168)
T 2yue_A 84 KYA 86 (168)
T ss_dssp SSS
T ss_pred CcC
Confidence 743
No 4
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.7e-22 Score=173.95 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=74.2
Q ss_pred CCCCccccCCCCcEEEcCCCeeEEec--cCCCCCeEEEeCCCCCCCCeEEEEEeeeCCCcccceEEeeeeeCCCCCCCCC
Q psy269 259 LVPLPFHRTIGRNVRLSNDRTIASRR--DTEFSQGYVFTGRPVQLGEKIVIQVLETESRYYGALALGLTSCNPASLKPSV 336 (345)
Q Consensus 259 ~~~l~FH~~~G~~V~Ls~~~~~A~R~--~~~f~~glVfS~RPL~~~E~~~vrI~~~~~~w~GsL~~GvT~~~P~~L~~~~ 336 (345)
...++||+.||+||+|++++++|+|. ..+|++|||||+|||+++|+|+|||++.+..|+|+|+||||+|||++|+
T Consensus 4 ~~~l~FH~~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~--- 80 (170)
T 2e63_A 4 GSSGELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSVLD--- 80 (170)
T ss_dssp CCSSCCCSCCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTCEEEEEEEEECCSSCCCCEEEEESSCTTSCC---
T ss_pred ccccccccccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCCEEEEEEEeecCCcceeEEEEEEccChhhcc---
Confidence 35689999999999999999999998 5899999999999999999999999999999999999999999999997
Q ss_pred CCcc
Q psy269 337 FLLS 340 (345)
Q Consensus 337 Lp~~ 340 (345)
||.+
T Consensus 81 lP~~ 84 (170)
T 2e63_A 81 FPSS 84 (170)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6654
No 5
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=97.92 E-value=0.00019 Score=64.92 Aligned_cols=137 Identities=14% Similarity=0.255 Sum_probs=94.3
Q ss_pred ccccc-CCCCceEEecCCeeEEecccCCCeEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecCCCCcCcCCCCCC
Q psy269 35 LYFHQ-VHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYV 112 (345)
Q Consensus 35 l~FH~-~~G~nV~Ls~~~~~A~R~~sf~~giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~LP~~a 112 (345)
+.+-+ .+..++.|++|+.++++...+ +-|.++.++..|- .|||+|.+.. -.|.++||+.+.+ ..+.. ++
T Consensus 13 v~ld~~d~~~~l~ls~d~l~v~~~~~~--~~vra~~~v~~G~~YfEV~v~~~~--~~~~~~iG~a~~~-~~~~~-~~--- 83 (213)
T 3toj_A 13 VLLALHDRAPQLKISDDRLTVVGEKGY--SMVRASHGVRKGAWYFEITVDEMP--PDTAARLGWSQPL-GNLQA-PL--- 83 (213)
T ss_dssp CCEEEEEECTTSEECTTSSEEECCSSC--EEEEESCCBSSEEEEEEEEEEECC--TTCEEEEEEECTT-SCTTS-CT---
T ss_pred EEechhhCCCCEEEcCCCcEEEeCCce--eEEEeCCCccCCeEEEEEEEeecC--CCceEEEEeccCC-ccccc-CC---
Confidence 44444 578899999999999985443 6788999998764 4578877542 3578999998753 11211 11
Q ss_pred CCCcccccceeEe----------ccccccc---CCCcEEEEEEcCC---------ceEEEEEcCCcceeeeecCCCCCce
Q psy269 113 CPDLTNKPGYWAK----------ALAERFA---DQETVLFYYVTAA---------GDVHFGINGEEKGVFFTGVETRGPL 170 (345)
Q Consensus 113 ~pdL~~~~~~W~~----------~~~~~~~---~~g~~l~~~~~~~---------G~l~~~VNG~~~G~~~~~V~~~~pL 170 (345)
-.....|+. ...+.|. ..||+||+.++-+ |+|.|+.||+..|+++.++.. ++|
T Consensus 84 ----G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~~-~~l 158 (213)
T 3toj_A 84 ----GYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFE-GVY 158 (213)
T ss_dssp ----TSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCCS-SCB
T ss_pred ----CCCCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEcCCC-CcE
Confidence 111234443 1122343 5789999999743 799999999999999998864 489
Q ss_pred EEEEeccCCceEEEEe
Q psy269 171 WAMFDIYGNSTAIQLI 186 (345)
Q Consensus 171 wAvvDvYG~t~~V~ll 186 (345)
|..|-++.. .+|++-
T Consensus 159 yPavsl~~~-~~v~~N 173 (213)
T 3toj_A 159 FPAISLYKS-CTVSIN 173 (213)
T ss_dssp EEEEEEESS-CEEEEE
T ss_pred EEEEEcCCC-CEEEEE
Confidence 999998753 346654
No 6
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=97.86 E-value=0.00051 Score=59.99 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCceEEecCCeeEEecccCCCeEEEcCCcCCCC-CEEEEEEEeEcCCcceeeEEeeeecCCCCcCcCCCCCCCCCccccc
Q psy269 42 GENVRVSRDGTVAKRYESFCKGVAFSSRPVKIN-EKVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKP 120 (345)
Q Consensus 42 G~nV~Ls~~~~~A~R~~sf~~giVFS~RPl~~~-E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~LP~~a~pdL~~~~ 120 (345)
..+|.++++..+.... +..-+.|.++.|+..+ -.|||+|.+... .|.++||+.+.+ ..+. .+|-. ..
T Consensus 8 ~~~l~~~~d~l~~~~~-~~~~~~vra~~p~~~g~~YfEv~i~~~~~--~~~~~IG~a~~~-~~~~-~~~G~-------d~ 75 (171)
T 2yyo_A 8 FKHILVDGDTLSYHGN-SGEVGCYVASRPLTKDSNYFEVSIVDSGV--RGTIAVGLVPQY-YSLD-HQPGW-------LP 75 (171)
T ss_dssp EESEEEETTEEEECCC-SSCCEEEECSSCCCSSSCEEEEEEEEETT--TCCCEEEEECTT-CCTT-SCTTS-------ST
T ss_pred cceEEEcCCEEEEeCC-CCceeEEEECCCCCCCCEEEEEEEEECCC--CcEEEEEecCCC-CCCc-cCCCc-------cC
Confidence 3467787775554432 3345889999999776 467898887643 689999998843 2222 12211 11
Q ss_pred ceeEec-----------cccccc---CCCcEEEEEEcCC------ceEEEEEcCCcceeeeecCCCCCceEEEEeccCCc
Q psy269 121 GYWAKA-----------LAERFA---DQETVLFYYVTAA------GDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNS 180 (345)
Q Consensus 121 ~~W~~~-----------~~~~~~---~~g~~l~~~~~~~------G~l~~~VNG~~~G~~~~~V~~~~pLwAvvDvYG~t 180 (345)
..|+.. ..+.|. ..||+|++.++.+ ++|+|..||+..|+++.++.. .+||..|-++..-
T Consensus 76 ~S~gy~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~~-~~lyPaV~l~~~g 154 (171)
T 2yyo_A 76 DSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSP-DGLFPAVGMHSLG 154 (171)
T ss_dssp TCEEEETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSCS-SSCEEEEEECSTT
T ss_pred CEEEEEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCcC-CCEEEEEEEecCC
Confidence 234321 123343 4799999999864 999999999999999988864 5899999998633
Q ss_pred eEEEEe
Q psy269 181 TAIQLI 186 (345)
Q Consensus 181 ~~V~ll 186 (345)
.+|++-
T Consensus 155 ~~v~vN 160 (171)
T 2yyo_A 155 EEVRLH 160 (171)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 456554
No 7
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=97.58 E-value=0.0017 Score=58.71 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=93.7
Q ss_pred Cccccc-CCCCceEEecCCeeEEec---ccCCCeEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecCCCCcCcCC
Q psy269 34 PLYFHQ-VHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYAL 108 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~~A~R~---~sf~~giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~L 108 (345)
++.+-+ ....++.|++|++++++. +.| ..|.+..++..|. .+||+|.+... .+...|||...+-..-...
T Consensus 43 ~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~--~~Vl~~~~~~sGrhYWEV~v~~~~~--g~~~~vGv~~~~~~r~~~g- 117 (217)
T 3emw_A 43 RHGWNPKDCSENIEVKEGGLYFERRPVAQST--DGARGKRGYSRGLHAWEISWPLEQR--GTHAVVGVATALAPLQTDH- 117 (217)
T ss_dssp HTSEEEEEECTTEEEEGGGTEEEECCBSSCE--EEEEESCCBSSSEEEEEEECCGGGC--TTCCEEEEECTTSCCEESS-
T ss_pred ceEeCcccCCCCEEECCCCeEEEECccCCCC--CEEEeCCCccCccEEEEEEEcccCC--CCceeEEEEcCccccccCC-
Confidence 455555 578899999999999874 344 4788999998775 34776653211 1357899977543210000
Q ss_pred CCCCCCCcccccceeEecc--------c-----cccc--------CCCcEEEEEEc-CCceEEEEEcCCcceeeeecCCC
Q psy269 109 PRYVCPDLTNKPGYWAKAL--------A-----ERFA--------DQETVLFYYVT-AAGDVHFGINGEEKGVFFTGVET 166 (345)
Q Consensus 109 P~~a~pdL~~~~~~W~~~~--------~-----~~~~--------~~g~~l~~~~~-~~G~l~~~VNG~~~G~~~~~V~~ 166 (345)
.. ..+-...++|.... . ..|. ..+++|++++| +.|.|.|++||+..|++++++.
T Consensus 118 --~~-~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~- 193 (217)
T 3emw_A 118 --YA-ALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLK- 193 (217)
T ss_dssp --SC-CCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT-
T ss_pred --cc-ccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEECCC-
Confidence 00 01122235665321 0 1232 56789999998 7899999999999999999877
Q ss_pred CCceEEEEecc-CCceEEEEe
Q psy269 167 RGPLWAMFDIY-GNSTAIQLI 186 (345)
Q Consensus 167 ~~pLwAvvDvY-G~t~~V~ll 186 (345)
+++||..|-++ |.| +|+|+
T Consensus 194 ~~~LyP~~sl~~g~~-~v~l~ 213 (217)
T 3emw_A 194 GRTLYPAVSAVWGQC-QVRIR 213 (217)
T ss_dssp TCCBEEEEEECSTTC-EEEEE
T ss_pred CCEEEEEEEeccCCc-EEEEE
Confidence 46899999875 544 46664
No 8
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=97.14 E-value=0.013 Score=52.36 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=91.5
Q ss_pred Cccccc-CCCCceEEecCCe-eEEecc-cCCCeEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecCCCCcCcCCC
Q psy269 34 PLYFHQ-VHGENVRVSRDGT-VAKRYE-SFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALP 109 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~-~A~R~~-sf~~giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~LP 109 (345)
++.+.+ ....++.|++|++ +.++.. ...-..|..+.++..|. .+||+|..... ++..+|||....=..-..
T Consensus 32 ~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~--~~~w~vGV~~~~~~r~~~--- 106 (212)
T 2jk9_A 32 LHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQR--GTHAVVGVATADAPLHSV--- 106 (212)
T ss_dssp HTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGC--TTCCEEEEECTTSCCEEE---
T ss_pred ccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccC--CCcEEEEEEcCCcccccc---
Confidence 355665 5678999999986 444431 22235788999998775 45777753211 234469997644221000
Q ss_pred CCCCCCcccccceeEeccc--------c-----ccc---------CCCcEEEEEEc-CCceEEEEEcCCcceeeeecCCC
Q psy269 110 RYVCPDLTNKPGYWAKALA--------E-----RFA---------DQETVLFYYVT-AAGDVHFGINGEEKGVFFTGVET 166 (345)
Q Consensus 110 ~~a~pdL~~~~~~W~~~~~--------~-----~~~---------~~g~~l~~~~~-~~G~l~~~VNG~~~G~~~~~V~~ 166 (345)
.+ ...+-...++|+.... . .+. ..+++||+.+| +.|+|.|++||+..|.+++++.
T Consensus 107 g~-~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~~- 184 (212)
T 2jk9_A 107 GY-TTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK- 184 (212)
T ss_dssp SS-CCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT-
T ss_pred Cc-ccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccCC-
Confidence 00 0111223456754320 0 121 35799999998 7899999999999999999876
Q ss_pred CCceEEEEec-cCCceEEEEe
Q psy269 167 RGPLWAMFDI-YGNSTAIQLI 186 (345)
Q Consensus 167 ~~pLwAvvDv-YG~t~~V~ll 186 (345)
+++||..|-+ +|.+ .|+|.
T Consensus 185 ~~~l~P~f~l~~g~~-~v~l~ 204 (212)
T 2jk9_A 185 GKKLYPVVSAVWGHC-EIRMR 204 (212)
T ss_dssp TCCBEEEEEECCTTC-EEEEE
T ss_pred CCEEeeEEEEEcCCc-EEEEE
Confidence 5699999998 4755 36664
No 9
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=96.71 E-value=0.007 Score=54.82 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=92.2
Q ss_pred Cccccc-CCCCceEEecCCeeEEec---ccCCCeEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecCCCCcCcCC
Q psy269 34 PLYFHQ-VHGENVRVSRDGTVAKRY---ESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYAL 108 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~~A~R~---~sf~~giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~L 108 (345)
++.+.+ ....++.|++|++++++. +.|. .|.++.++..|. .+||+|.... -++...|||....-..-+.
T Consensus 40 ~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~--~Vlg~~~f~sGrhYWEV~V~~~~--~~~~w~vGV~~~s~~~~r~-- 113 (226)
T 2afj_A 40 HHGWNPKDCSENIDVKEGGLCFERRPVAQSTD--GVRGKRGYSRGLHAWEISWPLEQ--RGTHAVVGVATALAPLQAD-- 113 (226)
T ss_dssp HHSSCCSSSCCSSEEETTTTEEECSSCTTTSS--SEEECCCCCCSEEEEEEECCCCS--SSCCCEEEEEESSCCCSSC--
T ss_pred ccEEccccCCCCEEEeCCCEEEEECCCCCCcC--eEEECCCccCCEEEEEEEEeccC--CCCCEEEEecCCccccccc--
Confidence 355555 678899999999988863 3443 788999998885 4577765421 1345679997754320000
Q ss_pred CCCCCCCcccccceeEeccc-------------ccc--------cCCCcEEEEEEc-CCceEEEEEcCCcceeeeecCCC
Q psy269 109 PRYVCPDLTNKPGYWAKALA-------------ERF--------ADQETVLFYYVT-AAGDVHFGINGEEKGVFFTGVET 166 (345)
Q Consensus 109 P~~a~pdL~~~~~~W~~~~~-------------~~~--------~~~g~~l~~~~~-~~G~l~~~VNG~~~G~~~~~V~~ 166 (345)
... ..+-....+|+.... ..| -..+++||+.++ +.|+|.|+.||...|.+++++.
T Consensus 114 -~~~-~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~- 190 (226)
T 2afj_A 114 -HYA-ALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK- 190 (226)
T ss_dssp -SSS-CCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHH-
T ss_pred -ccc-ccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEcCC-
Confidence 000 011223456765421 012 135889999998 7899999999999988888765
Q ss_pred CCceEEEEecc-CCceEEEEe
Q psy269 167 RGPLWAMFDIY-GNSTAIQLI 186 (345)
Q Consensus 167 ~~pLwAvvDvY-G~t~~V~ll 186 (345)
+++||..|-+. |.+ .|+|.
T Consensus 191 ~~~L~P~f~l~~g~~-~v~l~ 210 (226)
T 2afj_A 191 GRTLYPSVSAVWGQC-QVRIR 210 (226)
T ss_dssp HHCCEEEEEECCTTS-CCEEE
T ss_pred CCEEEEEEEcccCCC-EEEEE
Confidence 45899999974 654 24443
No 10
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=95.08 E-value=1.4 Score=38.69 Aligned_cols=132 Identities=16% Similarity=0.258 Sum_probs=82.0
Q ss_pred Cccccc-CCCCceEEecCCeeEEecc----------cCCC-eEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecC
Q psy269 34 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAND 100 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~~A~R~~----------sf~~-giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~d 100 (345)
++.+.+ +...++.|++|++.+++.. .|.. ..|+..+.+..|. .+||++.. ++.-.|||+...
T Consensus 10 ~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~-----~~~w~vGV~~~s 84 (188)
T 2vok_A 10 HITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ-----KEAWDLGVCRDS 84 (188)
T ss_dssp CCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTT-----CSCEEEEEEETT
T ss_pred ceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecC-----CceEEEEEeeCC
Confidence 455665 5667999999999998732 3543 4788999998886 45887743 223578987643
Q ss_pred CCCcCcCCCCCCCCCcccccceeEecccc-cc------------cCCCcEEEEEEc-CCceEEEEEcCCcc-eeeee--c
Q psy269 101 PAHLKYALPRYVCPDLTNKPGYWAKALAE-RF------------ADQETVLFYYVT-AAGDVHFGINGEEK-GVFFT--G 163 (345)
Q Consensus 101 P~~l~~~LP~~a~pdL~~~~~~W~~~~~~-~~------------~~~g~~l~~~~~-~~G~l~~~VNG~~~-G~~~~--~ 163 (345)
-.. .... .|....++|+..+.. .| .....+||+.+| +.|.|-|+ |-.++ -.+.+ .
T Consensus 85 i~R-kg~~------~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~~~~~~rVGVfLDye~G~lSFY-~v~~~~~~I~tF~~ 156 (188)
T 2vok_A 85 VQR-KGQF------SLSPENGFWTIWLWQDSYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFY-NITDHGSLIYTFSE 156 (188)
T ss_dssp CCC-SSCC------CCSTTTTEEEEEEETTEEEECSSSCEEECCSSCCSEEEEEEETTTTEEEEE-ETTTTTEEEEEECS
T ss_pred cCC-CCcc------ccCCCCCEEEEEEECCEEEEEeCCccCEecCCCCCEEEEEEEcCCCEEEEE-ECCCCCeeeEEecC
Confidence 211 1111 133445778655421 11 124578999998 77999887 33444 33332 2
Q ss_pred CCCCCceEEEEeccC
Q psy269 164 VETRGPLWAMFDIYG 178 (345)
Q Consensus 164 V~~~~pLwAvvDvYG 178 (345)
+.-++||+.+|-++.
T Consensus 157 ~~Fs~pL~P~F~~~~ 171 (188)
T 2vok_A 157 CVFAGPLRPFFNVGF 171 (188)
T ss_dssp CCCCSCEEEEEECCC
T ss_pred CCCCCCEEeEEEecc
Confidence 234689999998874
No 11
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=95.05 E-value=0.29 Score=42.96 Aligned_cols=133 Identities=15% Similarity=0.212 Sum_probs=78.8
Q ss_pred ceEEecCCeeEEecccCCCeEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecCCCCcCcCCCCCCCCCcccccce
Q psy269 44 NVRVSRDGTVAKRYESFCKGVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNKPGY 122 (345)
Q Consensus 44 nV~Ls~~~~~A~R~~sf~~giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~LP~~a~pdL~~~~~~ 122 (345)
++.||+|++.++..... -|....-+..|. .+||+|.. ++.-.+||.......-....... -.+....+|
T Consensus 23 ~l~lSed~r~Vr~~~~~---~VLG~~~ftsGrHYWEVeV~~-----~~~W~vGV~~~~~~r~~~~~~~~--~~~~~~~g~ 92 (186)
T 3uv9_A 23 HAVIAEDKRQVSSRAGT---GVLGSQSITSGKHYWEVDVSK-----KSAWILGVCAGFQSDAMYNIEQN--ENYQPKYGY 92 (186)
T ss_dssp CCEECTTSSCEECCCSS---CEECSSCBCSSEEEEEEECTT-----CSCEEEEEESCSTTTTTTTHHHH--TCCCGGGTE
T ss_pred CceECCCCCEEeecCCC---cCcCCCCCCCCCEEEEEEEcC-----CCcEEEEEEEEEecccccccCCC--cccCCCCCE
Confidence 57899999988543332 388888888776 44887743 22345788543222110000000 113345578
Q ss_pred eEeccccc--c---------------------cCCCcEEEEEEc-CCceEEEEEcCCccee-eee--cCCCCCceEEEEe
Q psy269 123 WAKALAER--F---------------------ADQETVLFYYVT-AAGDVHFGINGEEKGV-FFT--GVETRGPLWAMFD 175 (345)
Q Consensus 123 W~~~~~~~--~---------------------~~~g~~l~~~~~-~~G~l~~~VNG~~~G~-~~~--~V~~~~pLwAvvD 175 (345)
|+..+.+. | ...-.+||+.+| +.|.|-|+ |-.+++. +.+ ...=++|||.+|.
T Consensus 93 W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFY-nv~d~~~lI~tF~~~~Fs~pL~P~F~ 171 (186)
T 3uv9_A 93 WVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFF-NITNHGFLIYKFSQCSFSKPVFPYLN 171 (186)
T ss_dssp EEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEE-ETTTTTEEEEEECSCCCSSCBEEEEE
T ss_pred EEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEE-eCCCCceEEEEeCCcCCCCCEEeEEE
Confidence 87643221 1 122467899998 77999887 6566653 333 3344689999999
Q ss_pred ccCCceEEEEec
Q psy269 176 IYGNSTAIQLID 187 (345)
Q Consensus 176 vYG~t~~V~ll~ 187 (345)
+......++|..
T Consensus 172 ~~~~~~plticp 183 (186)
T 3uv9_A 172 PRKCTVPMTLCS 183 (186)
T ss_dssp CTTCCSCCEECC
T ss_pred CCCCCceEEEeC
Confidence 976555666654
No 12
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=93.58 E-value=3.7 Score=36.32 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=86.4
Q ss_pred Cccccc-CCCCceEEecCCeeEEecc----------cCCC-eEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecC
Q psy269 34 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTAND 100 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~~A~R~~----------sf~~-giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~d 100 (345)
.+.|.+ +...++.|++|++.+++.. .|.. ..|+..+-+..|. .+||++.. ++.-.|||....
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~-----~~~w~vGV~~~s 85 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT-----SQVWDVGVCKES 85 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT-----CSEEEEEEEETT
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCC-----CCEEEEEEeeCc
Confidence 456665 5678999999999998732 3443 4788998888776 45787643 133578997643
Q ss_pred CCCcCcCCCCCCCCCcccccceeEecccc--cc------------cCCCcEEEEEEc-CCceEEEEEcCCcceeeeec--
Q psy269 101 PAHLKYALPRYVCPDLTNKPGYWAKALAE--RF------------ADQETVLFYYVT-AAGDVHFGINGEEKGVFFTG-- 163 (345)
Q Consensus 101 P~~l~~~LP~~a~pdL~~~~~~W~~~~~~--~~------------~~~g~~l~~~~~-~~G~l~~~VNG~~~G~~~~~-- 163 (345)
-..- ... .+....+||+..+.. .| .....+||+.+| +.|.|-|+- -.++-.+.+-
T Consensus 86 i~Rk-g~~------~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~~~~~~~rVGVfLDye~G~lSFY~-v~~~~~i~tF~~ 157 (201)
T 2fbe_A 86 VNRQ-GKI------ELSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYN-VSDGCHIYTFIE 157 (201)
T ss_dssp SCCS-SCC------CCCTTTTEEEEEEETTTEEEECSSSCEEECCCTTCCEEEEEEETTTTEEEEEE-TTTTEEEEEECS
T ss_pred cCCC-Ccc------cccCCCCEEEEEEeCCCEEEEEcCCcccCccCCCCCEEEEEEEcCCCEEEEEe-CCCCceeEEEcC
Confidence 2111 111 123345788765421 11 123568999998 779998873 3444444432
Q ss_pred CCCCCceEEEEecc---C-CceEEEEec
Q psy269 164 VETRGPLWAMFDIY---G-NSTAIQLID 187 (345)
Q Consensus 164 V~~~~pLwAvvDvY---G-~t~~V~ll~ 187 (345)
+.-++||+.+|-+. | ....++|..
T Consensus 158 ~~Fs~pL~P~F~~~~~~~~~~~~l~ic~ 185 (201)
T 2fbe_A 158 IPVCEPWRPFFAHKRGSQDDQSILSICS 185 (201)
T ss_dssp CCCSSCEEEEEEEECSSSSCCCCEEECC
T ss_pred CCCCCCEEeEEEecccCCCCCCCEEEeC
Confidence 23468999999875 2 223466654
No 13
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=93.23 E-value=3.9 Score=35.77 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=81.9
Q ss_pred Cccccc-CCCCceEEecCCeeEEecc----------cCCC-eEEEcCCcCCCCCE-EEEEEEeEcCCcceeeEEeeeecC
Q psy269 34 PLYFHQ-VHGENVRVSRDGTVAKRYE----------SFCK-GVAFSSRPVKINEK-VYVKLLEISTNWSGVIRFGFTAND 100 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~~A~R~~----------sf~~-giVFS~RPl~~~E~-~~v~I~~~~~~wsG~l~~GvT~~d 100 (345)
.+.|.+ +...++.|++|++.+++.. .|.. ..|+..+.+..|.- +||++.. ++.-.|||....
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~-----~~~w~vGV~~~s 88 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGD-----KTAWILGACKTS 88 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTT-----CSCEEEEEEETT
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCC-----CCEEEEEEeeCC
Confidence 466665 5677999999999988732 2433 46888888877764 5777642 234578997643
Q ss_pred CCCcCcCCCCCCCCCcccccceeEeccc--ccc------------cCCCcEEEEEEc-CCceEEEEEcCCcceeeee--c
Q psy269 101 PAHLKYALPRYVCPDLTNKPGYWAKALA--ERF------------ADQETVLFYYVT-AAGDVHFGINGEEKGVFFT--G 163 (345)
Q Consensus 101 P~~l~~~LP~~a~pdL~~~~~~W~~~~~--~~~------------~~~g~~l~~~~~-~~G~l~~~VNG~~~G~~~~--~ 163 (345)
-.. .... .+....+||+..+. ..| .....+||+.+| +.|.|-|+ |-.+...+.+ .
T Consensus 89 ~~R-kg~~------~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~~~~~~~rVGVfLDye~G~lSFY-~v~~~~~i~tF~~ 160 (191)
T 2wl1_A 89 ISR-KGNM------TLSPENGYWVVIMMKENEYQASSVPPTRLLIKEPPKRVGIFVDYRVGSISFY-NVTARSHIYTFAS 160 (191)
T ss_dssp CCS-SSCC------CCCGGGTEEEEEEEETTEEEECCSSCEECCCSSCCSEEEEEEETTTTEEEEE-ETTTTEEEEEECC
T ss_pred cCC-CCcc------ccCCCCCEEEEEEeCCCEEEEEcCCCccCccccCCcEEEEEEEcCCCEEEEE-ECCCCcceEEeCC
Confidence 211 1111 13344578876532 111 123578999998 77999887 3344444443 2
Q ss_pred CCCCCceEEEEecc
Q psy269 164 VETRGPLWAMFDIY 177 (345)
Q Consensus 164 V~~~~pLwAvvDvY 177 (345)
+.-++||+.+|-+.
T Consensus 161 ~~Fs~pl~P~F~~~ 174 (191)
T 2wl1_A 161 CSFSGPLQPIFSPG 174 (191)
T ss_dssp CCCCSCEEEEEECC
T ss_pred CCCCCCEEeEEEcc
Confidence 23478999999886
No 14
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=72.31 E-value=36 Score=34.36 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=73.5
Q ss_pred ceEEecCCeeEEec------------------ccCCC-eEEEcCCcCCCCC-EEEEEEEeEcCCcceeeEEeeeecCCCC
Q psy269 44 NVRVSRDGTVAKRY------------------ESFCK-GVAFSSRPVKINE-KVYVKLLEISTNWSGVIRFGFTANDPAH 103 (345)
Q Consensus 44 nV~Ls~~~~~A~R~------------------~sf~~-giVFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~ 103 (345)
+..||+|++..++. +.|.. ..|+...-+..|. .+||+|.. ...| .+||.......
T Consensus 421 ~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~-~~~w----~~Gv~~~~~~~ 495 (602)
T 4b3n_A 421 HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSK-KSAW----ILGVCAGFQSD 495 (602)
T ss_dssp SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTT-CSCE----EEEEECCCCTT
T ss_pred ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECC-CeeE----EEEEeeccccc
Confidence 56799999888642 12332 3577888887775 45888753 3456 47885432221
Q ss_pred cCcCCCCCCCCCcccccceeEeccccc--cc---------------------CCCcEEEEEEc-CCceEEEEEcCCccee
Q psy269 104 LKYALPRYVCPDLTNKPGYWAKALAER--FA---------------------DQETVLFYYVT-AAGDVHFGINGEEKGV 159 (345)
Q Consensus 104 l~~~LP~~a~pdL~~~~~~W~~~~~~~--~~---------------------~~g~~l~~~~~-~~G~l~~~VNG~~~G~ 159 (345)
-.... +..+ .+....+||+..+.+. |. ..=.+||+.++ +.|+|-|+ |-.+++.
T Consensus 496 ~~~~~-~~~~-~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~sFy-~~~~~~~ 572 (602)
T 4b3n_A 496 AMYNI-EQNE-NYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFF-NITNHGF 572 (602)
T ss_dssp TSSTH-HHHC-CCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEEEEE-ETTTTTE
T ss_pred ccccc-CCCc-ccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEEEEE-eCCCCce
Confidence 11000 0000 1233457897654321 10 11257899998 77998876 4445543
Q ss_pred -eee--cCCCCCceEEEEeccCCceEEEE
Q psy269 160 -FFT--GVETRGPLWAMFDIYGNSTAIQL 185 (345)
Q Consensus 160 -~~~--~V~~~~pLwAvvDvYG~t~~V~l 185 (345)
+.+ ...-++|||.+|-+......++|
T Consensus 573 ~i~tf~~~~f~~~l~P~f~~~~~~~~l~i 601 (602)
T 4b3n_A 573 LIYKFSQCSFSKPVFPYLNPRKCTVPMTL 601 (602)
T ss_dssp EEEEECSCCCCSCBEEEEECTTCSSCEEE
T ss_pred eeEeCCCcCCCCCEeCeEECCCCCCceEe
Confidence 333 34446899999988433333443
No 15
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=70.28 E-value=53 Score=28.37 Aligned_cols=132 Identities=19% Similarity=0.263 Sum_probs=77.1
Q ss_pred Cccccc-CCCCceEEecCCeeEEecc-----------cCCC-eEEEcCCcCCCCCE-EEEEEEeEcCCcceeeEEeeeec
Q psy269 34 PLYFHQ-VHGENVRVSRDGTVAKRYE-----------SFCK-GVAFSSRPVKINEK-VYVKLLEISTNWSGVIRFGFTAN 99 (345)
Q Consensus 34 ~l~FH~-~~G~nV~Ls~~~~~A~R~~-----------sf~~-giVFS~RPl~~~E~-~~v~I~~~~~~wsG~l~~GvT~~ 99 (345)
.+.+-+ +-..++.|++|++.+++.. .|.. ..|+....+..|.- +||++... .. -.+||+..
T Consensus 13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~~-~~----W~lGV~~~ 87 (193)
T 3kb5_A 13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGDK-PR----WALGVIAA 87 (193)
T ss_dssp CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTTC-SS----EEEEEEET
T ss_pred cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCcC-ce----EEEEEeeC
Confidence 356665 5677899999999888732 2433 57889988887764 57876531 23 47898764
Q ss_pred CCCCcCcCCCCCCCCCcccccceeEeccccc--c---------------cCCCcEEEEEEc-CCceEEEE-EcCCc-cee
Q psy269 100 DPAHLKYALPRYVCPDLTNKPGYWAKALAER--F---------------ADQETVLFYYVT-AAGDVHFG-INGEE-KGV 159 (345)
Q Consensus 100 dP~~l~~~LP~~a~pdL~~~~~~W~~~~~~~--~---------------~~~g~~l~~~~~-~~G~l~~~-VNG~~-~G~ 159 (345)
.-..-. .. .+....++|+..+... | ...-.+||+++| +.|.|-|+ |...+ +-.
T Consensus 88 s~~Rkg-~~------~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~s~ 160 (193)
T 3kb5_A 88 EAPRRG-RL------HAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGDGVLSFYDASDADALVP 160 (193)
T ss_dssp TSCCSS-SC------CCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTTTEEEEEECCSTTCCEE
T ss_pred CcCcCC-Cc------CCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCCCEEEEEeCCCCCCceE
Confidence 322211 11 1222446786432210 1 122358899998 67898765 43311 223
Q ss_pred eeec-CCCCCceEEEEecc
Q psy269 160 FFTG-VETRGPLWAMFDIY 177 (345)
Q Consensus 160 ~~~~-V~~~~pLwAvvDvY 177 (345)
+.+- ..=++||+.+|-+.
T Consensus 161 I~tF~~~Ft~pl~P~F~~~ 179 (193)
T 3kb5_A 161 LFAFHERLPRPVYPFFDVC 179 (193)
T ss_dssp EEEECSCCCSCEEEEEECC
T ss_pred EEEeCCCCCCCeECEEEcc
Confidence 3221 13367999999873
No 16
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=35.79 E-value=25 Score=26.76 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=28.8
Q ss_pred CeEEEeCCCC-CCCCeEEEEEeeeCCCcc--cceEEeeeeeCCCCC
Q psy269 290 QGYVFTGRPV-QLGEKIVIQVLETESRYY--GALALGLTSCNPASL 332 (345)
Q Consensus 290 ~glVfS~RPL-~~~E~~~vrI~~~~~~w~--GsL~~GvT~~~P~~L 332 (345)
...++++||+ ++||++.+++--....+. ...-+=++-.||..-
T Consensus 3 ~~fi~tDr~iYrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~ 48 (102)
T 2p9r_A 3 LVFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGN 48 (102)
T ss_dssp EEEEEESCSEECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSC
T ss_pred eEEEECCCcccCCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCC
Confidence 3679999998 999999999875544332 112234555677653
No 17
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=32.42 E-value=38 Score=25.71 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=20.5
Q ss_pred CeEEEcCCcC-CCCCEEEEEEEeEcC
Q psy269 62 KGVAFSSRPV-KINEKVYVKLLEIST 86 (345)
Q Consensus 62 ~giVFS~RPl-~~~E~~~v~I~~~~~ 86 (345)
...+|++||+ ++||.|.+++.-...
T Consensus 3 ~~fi~tDr~iYrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 3 LVFVQTDKSIYKPGQTVKFRVVSMDE 28 (102)
T ss_dssp EEEEEESCSEECTTCEEEEEEEEECG
T ss_pred eEEEECCCcccCCCCEEEEEEEEECC
Confidence 3679999998 999999999865433
No 18
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=25.60 E-value=1.4e+02 Score=25.87 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=40.4
Q ss_pred CCCCcEEEcCCCeeEEeccCCCCCeEEEeCCCCCCCCe-EEEEEeeeCCCcccceEEeeeee
Q psy269 267 TIGRNVRLSNDRTIASRRDTEFSQGYVFTGRPVQLGEK-IVIQVLETESRYYGALALGLTSC 327 (345)
Q Consensus 267 ~~G~~V~Ls~~~~~A~R~~~~f~~glVfS~RPL~~~E~-~~vrI~~~~~~w~GsL~~GvT~~ 327 (345)
.++.++.|++++.++++. . .-..|.++.++..|-- |+|+|... .-.+.++||+++-
T Consensus 19 d~~~~l~ls~d~l~v~~~-~--~~~~vra~~~v~~G~~YfEV~v~~~--~~~~~~~iG~a~~ 75 (213)
T 3toj_A 19 DRAPQLKISDDRLTVVGE-K--GYSMVRASHGVRKGAWYFEITVDEM--PPDTAARLGWSQP 75 (213)
T ss_dssp EECTTSEECTTSSEEECC-S--SCEEEEESCCBSSEEEEEEEEEEEC--CTTCEEEEEEECT
T ss_pred hCCCCEEEcCCCcEEEeC-C--ceeEEEeCCCccCCeEEEEEEEeec--CCCceEEEEeccC
Confidence 478899999999998764 2 3367888999986532 36666543 2357899999864
No 19
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=23.79 E-value=15 Score=23.31 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=14.3
Q ss_pred CcccccCCCCceEEecC
Q psy269 34 PLYFHQVHGENVRVSRD 50 (345)
Q Consensus 34 ~l~FH~~~G~nV~Ls~~ 50 (345)
-+.||...|++|.|...
T Consensus 5 ~lgFhTASGKkv~Iake 21 (35)
T 1n0w_B 5 LLGFHTASGKKVKIAKE 21 (35)
T ss_dssp GGSCEETTSCBCCCCHH
T ss_pred eeeeeecCCcEEEehHH
Confidence 47899999999988643
No 20
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=23.74 E-value=62 Score=32.54 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=28.8
Q ss_pred CCCeEEE--eCCCC-CCCCeEEEEEeeeCCCcc-cceEEeeeeeCCCCC
Q psy269 288 FSQGYVF--TGRPV-QLGEKIVIQVLETESRYY-GALALGLTSCNPASL 332 (345)
Q Consensus 288 f~~glVf--S~RPL-~~~E~~~vrI~~~~~~w~-GsL~~GvT~~~P~~L 332 (345)
+..++|| |+||+ |+||++.+|+.-...... -.-.+-++-.||...
T Consensus 117 ~~~~~vFIqTDr~iYrPGqtV~~r~i~~d~~~~p~~~~~~v~i~dp~g~ 165 (656)
T 4fxk_A 117 SRRGHLFLQTDQPIYNPGQRVRYRVFALDQKMRPSTDTITVMVENSHGL 165 (656)
T ss_dssp CCCSEEEEEESCSEECTTCEEEEEEEEECSSSSBCCCCEEEEEECTTCC
T ss_pred ccCccEEEECCCCCcCCCCEEEEEEEEECCccCcCcccceEEEECCCCc
Confidence 4567777 99999 999999999874433221 111233555666653
No 21
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=21.37 E-value=72 Score=32.04 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=22.9
Q ss_pred cCCCeEEE--cCCcC-CCCCEEEEEEEeEcCC
Q psy269 59 SFCKGVAF--SSRPV-KINEKVYVKLLEISTN 87 (345)
Q Consensus 59 sf~~giVF--S~RPl-~~~E~~~v~I~~~~~~ 87 (345)
+...+.+| |+||| |+||.|.+|+.-....
T Consensus 116 ~~~~~~vFIqTDr~iYrPGqtV~~r~i~~d~~ 147 (656)
T 4fxk_A 116 SSRRGHLFLQTDQPIYNPGQRVRYRVFALDQK 147 (656)
T ss_dssp CCCCSEEEEEESCSEECTTCEEEEEEEEECSS
T ss_pred eccCccEEEECCCCCcCCCCEEEEEEEEECCc
Confidence 44567788 99999 9999999998755443
No 22
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=20.44 E-value=88 Score=27.18 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.5
Q ss_pred CCCcEEEEEEcCCceEEEEEcCCcceee
Q psy269 133 DQETVLFYYVTAAGDVHFGINGEEKGVF 160 (345)
Q Consensus 133 ~~g~~l~~~~~~~G~l~~~VNG~~~G~~ 160 (345)
..|+.+.|...++|.+.+++||+..|..
T Consensus 141 ~kGd~i~~~~~p~~~l~~~~~g~~~g~I 168 (205)
T 4doo_A 141 PRNSTIDLTKDPGHVLSVAIEGNHVGSV 168 (205)
T ss_dssp CTTCEEEEEEETTTEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEcCCCcEEEEECCeeeEEE
Confidence 4799999999999999999999877753
No 23
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae, beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria phage T7} PDB: 4a0u_A
Probab=20.32 E-value=61 Score=28.00 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=21.8
Q ss_pred CCCCCCCccccc-CCCCceEEecCCeeEE
Q psy269 28 GTNNLPPLYFHQ-VHGENVRVSRDGTVAK 55 (345)
Q Consensus 28 ~~~~~~~l~FH~-~~G~nV~Ls~~~~~A~ 55 (345)
++++-.+-.||. ++|.++.|..|-.+.-
T Consensus 75 gsdnnndctfhsyv~gt~ltlk~dyavvn 103 (227)
T 4a0t_A 75 GSDNNNDCTFHSYVHGTTLTLKQDYAVVN 103 (227)
T ss_dssp CSSSCCCEEEEETTTTEEEEECSSEEEES
T ss_pred cCCCCCcceEEEEEecceeeeccchheee
Confidence 456677889997 8999999988865543
Done!