RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy269
(345 letters)
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 34.1 bits (77), Expect = 0.015
Identities = 24/159 (15%), Positives = 40/159 (25%), Gaps = 18/159 (11%)
Query: 41 HGENVRVSRDG-TVAKRYESFCKGVAFSSRP---------VKINEK-------VYVKLLE 83
EN+ V G +R + R + + V V
Sbjct: 42 CSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATAL 101
Query: 84 ISTNWSGVIRF-GFTANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQETVLFYYV 142
G + Y P Y A E+ E +L
Sbjct: 102 APLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLD 161
Query: 143 TAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNST 181
G + + I G G F G++ R ++ ++G
Sbjct: 162 MEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQ 200
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 31.5 bits (71), Expect = 0.048
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 174 FDIYGNSTAIQLIDSRAQLNNARRVSTHLSPEELSSPINNNSNIDLMNRYIVNSMAAMNV 233
DI G + ++ + +ST + E+L + ++ + + ++ A+N
Sbjct: 6 IDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQ 65
Query: 234 HPQS--TPAPLPEDTQVPLRALTSPQDLVPLPFHRTIGRNVRLSND 277
+ +P S + V L ND
Sbjct: 66 ETGVIDGFSAVPYIHGFSWYEALS-----------SYQLPVHLEND 100
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN
{Thermotoga maritima [TaxId: 2336]}
Length = 87
Score = 28.8 bits (65), Expect = 0.27
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 18/69 (26%)
Query: 246 TQVPLRALTS--PQDLVPLPFHRTIGRNVRLS-NDRTIASRRDTEFSQGYVFTGRPVQLG 302
T++ L+ + ++ L + G V + N + I G V +
Sbjct: 21 TRMTLKRVLEMIHGSIIELD--KLTGEPVDILVNGKLI-------------ARGEVVVID 65
Query: 303 EKIVIQVLE 311
E +++ E
Sbjct: 66 ENFGVRITE 74
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 27.8 bits (62), Expect = 1.7
Identities = 36/197 (18%), Positives = 56/197 (28%), Gaps = 67/197 (34%)
Query: 36 YFHQVHGENVRVSRDGTVAKRYESFCKGVAFSSRPVKINEKVYVKLLEISTN-------- 87
+ ++H E R +++F P I E+ Y L+++ T
Sbjct: 25 KYTEIHPEM----RHVDCQSVWDAFKGAFISKH-PCNITEEDYQPLMKLGTQTVPCNKIL 79
Query: 88 -WSGVIRF--GFTANDPAH--LKYALPRYVCPDLT-----NKPG---------------- 121
WS + FT L+ L Y+ DLT N
Sbjct: 80 LWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDCSNN 139
Query: 122 ----YWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVF-----FTGVE------- 165
+W + RFA+ A VH +NG +F F VE
Sbjct: 140 PVSVFWKTV-SRRFAEA---------ACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPE 189
Query: 166 --TRGPLWAMFDIYGNS 180
W + +S
Sbjct: 190 KVQTLEAWVIHGGREDS 206
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 26.7 bits (58), Expect = 2.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 189 RAQLNNARRVSTHLSPEELSSPINNNSNI 217
+AQ+ A+ LSP++ + N +I
Sbjct: 12 KAQVKAAKADMVMLSPKDAYKLLQENPDI 40
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF
{Pseudomonas fluorescens [TaxId: 294]}
Length = 128
Score = 26.1 bits (57), Expect = 3.5
Identities = 14/76 (18%), Positives = 20/76 (26%)
Query: 109 PRYVCPDLTNKPGYWAKALAERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRG 168
P V D + P + +A E+ GD I + F G G
Sbjct: 19 PVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGAPLLG 78
Query: 169 PLWAMFDIYGNSTAIQ 184
A+ N
Sbjct: 79 TAIALGAHTDNHRLYL 94
>d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli
[TaxId: 562]}
Length = 321
Score = 27.1 bits (59), Expect = 3.5
Identities = 15/140 (10%), Positives = 31/140 (22%), Gaps = 16/140 (11%)
Query: 27 SGTNNLPPLY------FHQVHGENVRVSRDGTVAKRYESFCKGV---AFSSRPVKINEKV 77
+G P+Y + + G V G+ + S P+ +
Sbjct: 7 AGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGV-KQIIANTVDFGASDAPLSDEKLA 65
Query: 78 YVKLLEISTNWSGVIRFGFTANDPAHLKYALPRYVCPDLTNK------PGYWAKALAERF 131
L + T GV+ + + + K +
Sbjct: 66 QEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKL 125
Query: 132 ADQETVLFYYVTAAGDVHFG 151
Q + +G
Sbjct: 126 PSQNIAVVRRADGSGTSFVF 145
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 26.2 bits (58), Expect = 5.7
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 14/48 (29%)
Query: 97 TANDPAHLKYALPRYVCPDLTNKPGYWAKALAERFADQET--VLFYYV 142
N+P + + +AE F DQE VL +
Sbjct: 140 QMNEPPGARARVALTGL------------TVAEYFRDQEGQDVLLFID 175
>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA
carboxylase subunit alpha Mpe_A3659 {Rubrivivax
gelatinosus [TaxId: 28068]}
Length = 144
Score = 25.7 bits (56), Expect = 6.1
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 140 YYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMFDIYGNSTAI 183
Y +A H F+ + GPL G+ A+
Sbjct: 92 YGYESANARHDKTEFPVASEFY--MSFLGPL-TFVKPDGSPIAV 132
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 25.9 bits (56), Expect = 6.6
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 129 ERFADQETVLFYYVTAAGDVHFGINGEEKGVFFTGVETRGPLWAMF-DIYGNS 180
E F + L G + F ++ + G+ F G+ L+ + ++G+
Sbjct: 139 EAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGL-RGKKLYPIVSAVWGHC 190
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 24.8 bits (54), Expect = 8.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 226 NSMAAMNVHPQSTPAPLPE 244
++ A+ + P S+P LP+
Sbjct: 82 DTFEALCIEPFSSPPELPD 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,272,899
Number of extensions: 58333
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 13
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)