BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2690
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NUB|A Chain A, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
pdb|1NUB|B Chain B, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
Length = 229
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 50 WNFGTLDLDK-NKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNC 108
W FG LD + L E R + + C + CD +NDK I+L EW C
Sbjct: 159 WQFGQLDQHPIDGYLSHTELAPLR---APLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 215
Query: 109 LNV 111
+
Sbjct: 216 FGI 218
>pdb|2V53|A Chain A, Crystal Structure Of A Sparc-Collagen Complex
Length = 230
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 50 WNFGTLDLDK-NKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNC 108
W FG LD + L E R + + C + CD +NDK I+L EW C
Sbjct: 160 WQFGQLDQHPIDGYLSHTELAPLR---APLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 216
Query: 109 LNV 111
+
Sbjct: 217 FGI 219
>pdb|1BMO|A Chain A, Bm-40, FsEC DOMAIN PAIR
pdb|1BMO|B Chain B, Bm-40, FsEC DOMAIN PAIR
Length = 233
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 50 WNFGTLDLDK-NKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNC 108
W FG LD + L E R + + C + CD +NDK I+L EW C
Sbjct: 163 WQFGQLDQHPIDGYLSHTELAPLR---APLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 219
Query: 109 LNV 111
+
Sbjct: 220 FGI 222
>pdb|1SRA|A Chain A, Structure Of A Novel Extracellular Ca2+-Binding Module In
Bm-40(Slash)sparc(Slash)osteonectin
Length = 151
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 50 WNFGTLDLDK-NKVLEQEEWKNFRNLISQQKQLRRCGKKLPRHCDANNDKKISLSEWLNC 108
W FG LD + L E R + + C + CD +NDK I+L EW C
Sbjct: 81 WQFGQLDQHPIDGYLSHTELAPLR---APLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 137
Query: 109 LNV 111
+
Sbjct: 138 FGI 140
>pdb|3FS7|A Chain A, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|B Chain B, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|C Chain C, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|D Chain D, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|E Chain E, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|F Chain F, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|G Chain G, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|H Chain H, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
Length = 109
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 FGTLDLDKNKVLEQEEWKNF-RNLISQQKQLRRC-GKKLPRHCDANNDKKISLSEW 105
FG LD DK+ +E+EE + F +N S + L K D + D KI + E+
Sbjct: 48 FGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEF 103
>pdb|2KQY|A Chain A, Solution Structure Of Avian Thymic Hormone
Length = 108
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 FGTLDLDKNKVLEQEEWKNF-RNLISQQKQLRRC-GKKLPRHCDANNDKKISLSEW 105
FG LD DK+ +E+EE + F +N S + L K D + D KI + E+
Sbjct: 47 FGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEF 102
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 6 GHK-KREFLKGLMEYFMNTMLSQKNTTTSATEEGTFSTGDEQ 46
GH+ +FL G +E + ++ K +T + EG F+ GD Q
Sbjct: 274 GHEPATKFLNGQLELHADGYVATKPGSTHTSVEGVFAAGDVQ 315
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 45 EQVATWNFGTLDLDKNKVLEQEEW----KNFRNLISQQKQL-------RRCGKKLPRHCD 93
EQ W F DLD N + + E + ++S ++ + +K+ R D
Sbjct: 98 EQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMD 157
Query: 94 ANNDKKISLSEWL 106
N D K+SL E++
Sbjct: 158 TNRDGKLSLEEFI 170
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 80 QLRRCGKKLPRHCDANNDKKISLSEWLNCLNV 111
+ R C L HCD N D KI SE CL +
Sbjct: 240 KFREC---LLTHCDXNKDGKIQKSELALCLGL 268
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 50 WNFGTLDLDKNKVLEQEEWKNF-------RNLISQQKQLRRCGKKLPRHCDANNDKKISL 102
+ F DL + +E+EE K L+ + + K D ND KI +
Sbjct: 115 FAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDI 174
Query: 103 SEWLNCLNVN 112
EW + +++N
Sbjct: 175 DEWKDFVSLN 184
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 50 WNFGTLDLDKNKVLEQEEWKNF-------RNLISQQKQLRRCGKKLPRHCDANNDKKISL 102
+ F DL + +E+EE K L+ + + K D ND KI +
Sbjct: 115 FAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDI 174
Query: 103 SEWLNCLNVN 112
EW + +++N
Sbjct: 175 DEWKDFVSLN 184
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 41 STGDEQVATW--NFGTLDLDKNKVLEQEEW--KNFRNLISQQKQLRR 83
S+G+EQ+ TW + G L+ K + + EE+ + +N + K + R
Sbjct: 5 SSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINR 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,882,088
Number of Sequences: 62578
Number of extensions: 138554
Number of successful extensions: 263
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 24
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)